Citrus Sinensis ID: 016366
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 390 | 2.2.26 [Sep-21-2011] | |||||||
| A9X7L0 | 364 | Anthranilate N-methyltran | N/A | no | 0.923 | 0.989 | 0.751 | 1e-166 | |
| Q8W013 | 363 | Caffeic acid 3-O-methyltr | N/A | no | 0.894 | 0.961 | 0.485 | 1e-104 | |
| Q9XGW0 | 361 | Caffeic acid 3-O-methyltr | N/A | no | 0.874 | 0.944 | 0.488 | 1e-103 | |
| Q9XGV9 | 361 | Caffeic acid 3-O-methyltr | N/A | no | 0.874 | 0.944 | 0.488 | 1e-103 | |
| Q8LL87 | 350 | Caffeic acid 3-O-methyltr | N/A | no | 0.871 | 0.971 | 0.489 | 1e-102 | |
| O23760 | 370 | Caffeic acid 3-O-methyltr | N/A | no | 0.915 | 0.964 | 0.476 | 1e-102 | |
| Q6T1F5 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.876 | 0.936 | 0.476 | 1e-101 | |
| Q43609 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.910 | 0.972 | 0.477 | 1e-101 | |
| P28002 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.871 | 0.931 | 0.486 | 1e-101 | |
| Q9FQY8 | 359 | Caffeic acid 3-O-methyltr | N/A | no | 0.876 | 0.952 | 0.465 | 1e-101 |
| >sp|A9X7L0|ANMT_RUTGR Anthranilate N-methyltransferase OS=Ruta graveolens PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 584 bits (1506), Expect = e-166, Method: Compositional matrix adjust.
Identities = 296/394 (75%), Positives = 324/394 (82%), Gaps = 34/394 (8%)
Query: 1 MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA--GE 58
MGSLSE + E EE+EEESYS AMQL+M +VLPMATQ+AIQLGVFEIIAKA G
Sbjct: 1 MGSLSESHTQYKHGVEVEEDEEESYSRAMQLSMAIVLPMATQSAIQLGVFEIIAKAPGGR 60
Query: 59 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG--GERLYALNPVSKYFVSNK 116
LSA EIA LQAQN KAP+MLDRMLRLLVSHRVL+CSVSG GERLY L VSKYFV ++
Sbjct: 61 LSASEIATILQAQNPKAPVMLDRMLRLLVSHRVLDCSVSGPAGERLYGLTSVSKYFVPDQ 120
Query: 117 DGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVME 176
DGASLG+FMALPLDKVFMESW +G+K AVME
Sbjct: 121 DGASLGNFMALPLDKVFMESW------------------------------MGVKGAVME 150
Query: 177 GGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGG 236
GGIPFNRVHGMHIFEYAS N +F++TYH AMFNHSTIA++RILEHY+GF+NV +LVDVGG
Sbjct: 151 GGIPFNRVHGMHIFEYASSNSKFSDTYHRAMFNHSTIALKRILEHYKGFENVTKLVDVGG 210
Query: 237 GFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILH 296
G GVTLSMI SKYP I+A+NFDLPHVVQDA SY GVEHVGGNMFESVPEGDAILMKWILH
Sbjct: 211 GLGVTLSMIASKYPHIQAINFDLPHVVQDAASYPGVEHVGGNMFESVPEGDAILMKWILH 270
Query: 297 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE 356
CWDD+ CLRILKNCYKA P NGKVIVMNS+VPE PEVSS+ARETSLLDVLLMTRDGGGRE
Sbjct: 271 CWDDEQCLRILKNCYKATPENGKVIVMNSVVPETPEVSSSARETSLLDVLLMTRDGGGRE 330
Query: 357 RTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390
RT+KE+TELAI AGFKGINFA CVCNL+IMEFFK
Sbjct: 331 RTQKEFTELAIGAGFKGINFACCVCNLHIMEFFK 364
|
Involved in the biosynthesis of acridine alkaloids. N-methyltransferase with a strict substrate specificity for anthranilate. No activity with anthranilic acid methyl ester, anthraniloyl CoA, 3- or 4-amino-benzoic acid, salicylic acid, catechol, eugenol, caffeic acid, quercetin, theobromin, theophyllin, putrescine and nicotinic acid among others. Ruta graveolens (taxid: 37565) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1EC: 1 |
| >sp|Q8W013|COMT1_CATRO Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/387 (48%), Positives = 253/387 (65%), Gaps = 38/387 (9%)
Query: 12 QKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQL 68
K+ +EEEE+ AM+LA VLPM ++AI+L + E+I K+G +S E+AAQL
Sbjct: 7 DNKNSMTKEEEEACLSAMRLASASVLPMVLKSAIELDLLELIKKSGPGAYVSPSELAAQL 66
Query: 69 QAQNVKAPMMLDRMLRLLVSHRVLECSVS-----GGERLYALNPVSKYFVSNKDGASLGH 123
QN AP+MLDR+LRLL S+ VL C++ G ERLY+L PV K+ N+DG S+
Sbjct: 67 PTQNPDAPVMLDRILRLLASYSVLNCTLKDLPDGGIERLYSLAPVCKFLTKNEDGVSMAA 126
Query: 124 FMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNR 183
+ + DKV MESWY LKDAV+EGGIPFN+
Sbjct: 127 LLLMNQDKVLMESWY------------------------------HLKDAVLEGGIPFNK 156
Query: 184 VHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLS 243
+GM FEY +PRFN+ +++ M NHSTI M++ILE Y+GFQ ++ +VDVGGG G TL+
Sbjct: 157 AYGMTAFEYHGKDPRFNKVFNQGMSNHSTIIMKKILEIYQGFQGLKTVVDVGGGTGATLN 216
Query: 244 MITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHC 303
MI SKYP IK +NFDLPHV++DAPSY GV+HVGG+MF SVP+GDAI MKWI H W D HC
Sbjct: 217 MIVSKYPSIKGINFDLPHVIEDAPSYPGVDHVGGDMFVSVPKGDAIFMKWICHDWSDAHC 276
Query: 304 LRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT 363
L+ LKNC++A+P NGKVI+ ++PE P+ + + + T +DV+++ + GG+ERT+KE+
Sbjct: 277 LKFLKNCHEALPENGKVILAECLLPEAPDSTLSTQNTVHVDVIMLAHNPGGKERTEKEFE 336
Query: 364 ELAIAAGFKGINFASCVCNLYIMEFFK 390
LA AGF+G C N +IME K
Sbjct: 337 ALAKGAGFRGFIKVCCAYNSWIMELLK 363
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Catharanthus roseus (taxid: 4058) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/379 (48%), Positives = 244/379 (64%), Gaps = 38/379 (10%)
Query: 20 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKAP 76
+EEE++ AMQLA VLPM ++AI+L + E+I K+G +S ++AAQL N A
Sbjct: 13 DEEENFLFAMQLASASVLPMVLKSAIELDLLELIKKSGAGAFVSPVDLAAQLPTTNPDAH 72
Query: 77 MMLDRMLRLLVSHRVLECSVS-----GGERLYALNPVSKYFVSNKDGASLGHFMALPLDK 131
+MLDR+LRLL S+ +LEC + G ERLY L PV K+ N+DG S+ + DK
Sbjct: 73 VMLDRILRLLTSYAILECRLKTLPDGGVERLYGLAPVCKFLTKNEDGVSMAPLTLMNQDK 132
Query: 132 VFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFE 191
V MESWY L DAV++GGIPFN+ +GM FE
Sbjct: 133 VLMESWY------------------------------HLSDAVVDGGIPFNKAYGMTAFE 162
Query: 192 YASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ 251
Y +PRFN+ +++ M NHSTI M++ILE Y GF ++ +VDVGGG G TL+MI SKYP
Sbjct: 163 YHGTDPRFNKVFNQGMSNHSTITMKKILETYTGFDGLKTVVDVGGGTGATLNMIVSKYPS 222
Query: 252 IKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCY 311
IK +NFDLPHV++DAPSY GVEHVGG+MF SVP+GDAI MKWI H W D+HC++ LKNCY
Sbjct: 223 IKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCY 282
Query: 312 KAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGF 371
A+P NGKVI+ ++PE P+ A + +DV+++ + GG+ERT+KE+ LA AAGF
Sbjct: 283 DALPQNGKVILAECVLPEAPDTGLATKNVVHIDVIMLAHNPGGKERTEKEFQGLAKAAGF 342
Query: 372 KGINFASCVCNLYIMEFFK 390
K N A C N +IME K
Sbjct: 343 KQFNKACCAYNTWIMELLK 361
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9XGV9|COMT2_OCIBA Caffeic acid 3-O-methyltransferase 2 OS=Ocimum basilicum GN=COMT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (959), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/379 (48%), Positives = 244/379 (64%), Gaps = 38/379 (10%)
Query: 20 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKAP 76
+EEE++ AMQLA VLPM ++AI+L + E+I KAG +S E+AAQL N +A
Sbjct: 13 DEEENFLFAMQLASASVLPMVLKSAIELDLLELIKKAGAGAFVSPAELAAQLLTTNAEAH 72
Query: 77 MMLDRMLRLLVSHRVLECSVS-----GGERLYALNPVSKYFVSNKDGASLGHFMALPLDK 131
+MLDR+LRLL S+ +LEC + G +RLY L PV K+ N+DG S+ + DK
Sbjct: 73 VMLDRILRLLTSYAILECRLKTLPDGGVQRLYGLAPVCKFLTKNEDGVSMAPLALMNQDK 132
Query: 132 VFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFE 191
V MESWY LKDAV++GGIPFN+ +GM FE
Sbjct: 133 VLMESWY------------------------------HLKDAVLDGGIPFNKAYGMTAFE 162
Query: 192 YASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ 251
Y +PRFN+ +++ M NHSTI M++ILE Y GF ++ +VDVGGG G TL+MI SKYP
Sbjct: 163 YHGTDPRFNKVFNQGMSNHSTITMKKILETYTGFDGLKTVVDVGGGTGATLNMIISKYPS 222
Query: 252 IKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCY 311
IK +NFDLPHVV+DAPSY GVEHVGG+MF SVP+GDAI MKWI H W D HC++ LK CY
Sbjct: 223 IKGINFDLPHVVEDAPSYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDAHCVKFLKKCY 282
Query: 312 KAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGF 371
+A+P NGKVI+ ++PE P+ A + +DV+++ + GG+ERT+KE+ LA A+GF
Sbjct: 283 EALPENGKVILAECVLPEAPDTGLATKNVVHIDVIMLAHNPGGKERTEKEFQVLAKASGF 342
Query: 372 KGINFASCVCNLYIMEFFK 390
K N C N +IME K
Sbjct: 343 KQFNKVCCAYNSWIMELLK 361
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1 | Back alignment and function description |
|---|
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/378 (48%), Positives = 246/378 (65%), Gaps = 38/378 (10%)
Query: 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKAPM 77
EEE+ AM LA VLPM ++AI+L + E+IAKAG +S E+AAQL N +AP+
Sbjct: 3 EEEACLFAMSLASASVLPMVLKSAIELDLLELIAKAGPGAYVSPSELAAQLPTHNPEAPI 62
Query: 78 MLDRMLRLLVSHRVLECSVS-----GGERLYALNPVSKYFVSNKDGASLGHFMALPLDKV 132
MLDR+LRLL ++ VL+C ++ G ERLY L PV K+ N DG S+ + + DKV
Sbjct: 63 MLDRILRLLATYSVLDCKLNNLADGGVERLYGLAPVCKFLTKNADGVSMAPLLLMNQDKV 122
Query: 133 FMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEY 192
MESWY LKDAV++GGIPFN+ +GM FEY
Sbjct: 123 LMESWY------------------------------HLKDAVLDGGIPFNKAYGMTAFEY 152
Query: 193 ASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI 252
+PRFN+ +++ M NHSTI M++ILE Y GF+ ++ +VDVGGG G TL+MI SKYP I
Sbjct: 153 HGTDPRFNKVFNQGMSNHSTITMKKILEVYRGFEGLKTVVDVGGGTGATLNMIISKYPTI 212
Query: 253 KAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYK 312
K +NF+LPHVV+DAPS++GVEHVGG+MF SVP+GDAI MKWI H W DDHC ++LKNCY+
Sbjct: 213 KGINFELPHVVEDAPSHSGVEHVGGDMFVSVPKGDAIFMKWICHDWSDDHCRKLLKNCYQ 272
Query: 313 AVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372
A+P NGKVI+ ++PE P+ S A + +DV+++ + GG+ERT+KE+ LA AGFK
Sbjct: 273 ALPDNGKVILAECVLPEAPDTSLATQNVVHVDVVMLAHNPGGKERTEKEFEALAKGAGFK 332
Query: 373 GINFASCVCNLYIMEFFK 390
N +IME K
Sbjct: 333 EFRKVCSAVNTWIMELCK 350
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Coffea canephora (taxid: 49390) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|O23760|COMT1_CLABR Caffeic acid 3-O-methyltransferase OS=Clarkia breweri GN=COMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 370 bits (950), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/401 (47%), Positives = 244/401 (60%), Gaps = 44/401 (10%)
Query: 1 MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA---- 56
MGS + H +EE + AMQLA VLPM +AAI+L V EI+AK+
Sbjct: 1 MGSTGNAETQLTPTHVSDEE---ANLFAMQLASASVLPMVLKAAIELDVLEIMAKSIPHG 57
Query: 57 --GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV-----SGGERLYALNPVS 109
+S EIAAQL N AP+MLDR+LRLL S+ V+ CS+ ERLY L PV
Sbjct: 58 SGAYISPAEIAAQLPTTNPDAPVMLDRVLRLLASYSVVTCSLRELPDGKVERLYGLAPVC 117
Query: 110 KYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLG 169
K+ N+DG SL + DKV MESWY
Sbjct: 118 KFLTKNEDGVSLAPLCLMNQDKVLMESWYY------------------------------ 147
Query: 170 LKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVE 229
LKDA+++GGIPFN+ +GM FEY +PRFN+ ++ M +HSTI M++I E Y GF+ +
Sbjct: 148 LKDAILDGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMSDHSTITMKKIFEMYTGFEALN 207
Query: 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAI 289
+VDVGGG G LSMI +KYP IK +NFDLPHV++DAP Y GVEHVGG+MF SVP+GDAI
Sbjct: 208 TIVDVGGGTGAVLSMIVAKYPSIKGINFDLPHVIEDAPIYPGVEHVGGDMFVSVPKGDAI 267
Query: 290 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT 349
MKWI H W D+HCL+ LKNCY A+P +GKVIV I+P P+ S A + +D +++
Sbjct: 268 FMKWICHDWSDEHCLKFLKNCYAALPEHGKVIVAECILPLSPDPSLATKGVIHIDAIMLA 327
Query: 350 RDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390
+ GG+ERT+KE+ LAI AGFKG A C N Y+MEF K
Sbjct: 328 HNPGGKERTEKEFEALAIGAGFKGFKVACCAFNTYVMEFLK 368
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Clarkia breweri (taxid: 36903) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q6T1F5|COMT1_AMMMJ Caffeic acid 3-O-methyltransferase OS=Ammi majus GN=COMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/380 (47%), Positives = 243/380 (63%), Gaps = 38/380 (10%)
Query: 19 EEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKA 75
++EEE+ AMQLA VLPM ++AI+L + E IAKAG +S ++AA L +
Sbjct: 16 DDEEEACMFAMQLASASVLPMVLKSAIELNLLESIAKAGPGAYVSPSQLAAALPSSQPDT 75
Query: 76 PMMLDRMLRLLVSHRVLECSV-----SGGERLYALNPVSKYFVSNKDGASLGHFMALPLD 130
P+MLDR+LRLL S+ VL C + + ERLY L PV K+ N DG S+ + + D
Sbjct: 76 PVMLDRILRLLASYSVLNCKLRDLPDARVERLYGLAPVCKFLTKNSDGVSMAPLLLMNQD 135
Query: 131 KVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIF 190
K+ MESWY LKDAV++GGIPFN+ +GM F
Sbjct: 136 KILMESWY------------------------------HLKDAVLDGGIPFNKAYGMTAF 165
Query: 191 EYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP 250
EY +PRFN+ +++ M NHSTI M++IL+ Y+GF ++ +VDVGGG G TL+MI SKYP
Sbjct: 166 EYHGKDPRFNKVFNQGMSNHSTITMKKILQTYDGFGGLKTVVDVGGGTGATLNMIISKYP 225
Query: 251 QIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNC 310
+K +NFDLPHVV+DAPSYAGVEHVGG+MF SVP+GDAI MKWI H W D HCL LKNC
Sbjct: 226 NLKGINFDLPHVVEDAPSYAGVEHVGGDMFVSVPKGDAIFMKWICHDWSDAHCLAFLKNC 285
Query: 311 YKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370
YKA+P +GKVI+ I+PE P+ + L+DV+++ + GG+ERT+KE+ AG
Sbjct: 286 YKALPKDGKVILAECILPEAPDSKLTTKNVILIDVIMLAHNPGGKERTEKEFEAFGKQAG 345
Query: 371 FKGINFASCVCNLYIMEFFK 390
FK N A C N +++E++K
Sbjct: 346 FKSFNKACCAYNTWVIEYYK 365
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ammi majus (taxid: 48026) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/398 (47%), Positives = 250/398 (62%), Gaps = 43/398 (10%)
Query: 1 MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-- 58
MGS E Q + +EE+ AMQLA VLPM +AAI+L + EI+AKAG
Sbjct: 1 MGSTGETQMTPT-----QVSDEEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGV 55
Query: 59 -LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV---SGG--ERLYALNPVSKYF 112
LS +IA+QL +N AP+MLDRMLRLL S+ +L S+ + G ERLY L PV K+
Sbjct: 56 FLSPTDIASQLPTKNPDAPVMLDRMLRLLASYSILTYSLRTLADGKVERLYGLGPVCKFL 115
Query: 113 VSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKD 172
N++G S+ + DKV +ESWY LKD
Sbjct: 116 TKNEEGVSIAPLCLMNQDKVLLESWY------------------------------HLKD 145
Query: 173 AVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLV 232
AV+EGGIPFN+ +GM FEY +PRFN+ ++ M +HSTI M++ILE Y+GF+ + +V
Sbjct: 146 AVLEGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMADHSTITMKKILETYKGFEGLTSVV 205
Query: 233 DVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMK 292
DVGGG G L+MI SKYP IK +NFDLPHV++DAP Y GVEHVGG+MF SVP+GDAI MK
Sbjct: 206 DVGGGTGAVLNMIVSKYPSIKGINFDLPHVIEDAPQYPGVEHVGGDMFVSVPKGDAIFMK 265
Query: 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDG 352
WI H W D+HCL+ LKNCY A+P NGKVI+ I+P P+ S A + +DV+++ +
Sbjct: 266 WICHDWSDEHCLKFLKNCYAALPDNGKVILGECILPVAPDSSLATKGVVHIDVIMLAHNP 325
Query: 353 GGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390
GG+ERT++E+ LA AGF+G N A N Y++EF K
Sbjct: 326 GGKERTEQEFQALAKGAGFQGFNVACSAFNTYVIEFLK 363
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Prunus dulcis (taxid: 3755) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|P28002|COMT1_MEDSA Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1 | Back alignment and function description |
|---|
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/378 (48%), Positives = 243/378 (64%), Gaps = 38/378 (10%)
Query: 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPM 77
+EE+ AMQLA VLPM ++A++L + EIIAKAG ++S EIA+QL N AP+
Sbjct: 16 DEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPV 75
Query: 78 MLDRMLRLLVSHRVLECSVSGGE-----RLYALNPVSKYFVSNKDGASLGHFMALPLDKV 132
MLDRMLRLL + +L CSV + RLY L V+KY V N+DG S+ + DKV
Sbjct: 76 MLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKV 135
Query: 133 FMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEY 192
MESWY LKDAV++GGIPFN+ +GM FEY
Sbjct: 136 LMESWY------------------------------HLKDAVLDGGIPFNKAYGMTAFEY 165
Query: 193 ASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI 252
+PRFN+ +++ M +HSTI M++ILE Y GF+ ++ LVDVGGG G ++ I SKYP I
Sbjct: 166 HGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTI 225
Query: 253 KAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYK 312
K +NFDLPHV++DAPSY GVEHVGG+MF S+P+ DA+ MKWI H W D+HCL+ LKNCY+
Sbjct: 226 KGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYE 285
Query: 313 AVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372
A+P NGKVIV I+P P+ S A + +DV+++ + GG+ERT+KE+ +LA AGF+
Sbjct: 286 ALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQ 345
Query: 373 GINFASCVCNLYIMEFFK 390
G N YIMEF K
Sbjct: 346 GFKVHCNAFNTYIMEFLK 363
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9FQY8|COMT1_CAPAN Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2 | Back alignment and function description |
|---|
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/380 (46%), Positives = 245/380 (64%), Gaps = 38/380 (10%)
Query: 19 EEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKA 75
+ E+E++ AMQLA VLPM ++A++L + EI+AKAG +S E+AAQL +N +A
Sbjct: 10 QTEDEAFLFAMQLASASVLPMVLKSALELDLLEIMAKAGPGAAISPSELAAQLPTKNPEA 69
Query: 76 PMMLDRMLRLLVSHRVLECSVSG-----GERLYALNPVSKYFVSNKDGASLGHFMALPLD 130
P+MLDRMLRLL ++ VL C++ ERLY+L PV K N DG S+ + + D
Sbjct: 70 PVMLDRMLRLLATYSVLNCTLRTLPDGRVERLYSLAPVCKLLTKNADGVSVAPLLLMNQD 129
Query: 131 KVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIF 190
KV MESWY L DAV++GG+PFN+ +GM F
Sbjct: 130 KVLMESWY------------------------------HLTDAVLDGGVPFNKAYGMTAF 159
Query: 191 EYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP 250
EY +PRFN+ ++ M +HST+ M++ILE Y+GF+ + +VDVGGG G T++MI SKYP
Sbjct: 160 EYHGTDPRFNKVFNRGMSDHSTMTMKKILEDYKGFEGLNSIVDVGGGTGATVNMIVSKYP 219
Query: 251 QIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNC 310
IK +NFDL HV++DAP+Y GVEHVG +MF SVP+ DAI MKWI H W D+HCL+ LKNC
Sbjct: 220 SIKGINFDLSHVIEDAPAYPGVEHVGRDMFVSVPKADAIFMKWICHDWSDEHCLKFLKNC 279
Query: 311 YKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370
Y+A+P NGKV+V I+PE P+ S+A + +D++++ + GG+ERT+KE+ LA AG
Sbjct: 280 YEALPANGKVLVAECILPETPDTSAATKNAVHVDIVMLAHNPGGKERTEKEFEALAKGAG 339
Query: 371 FKGINFASCVCNLYIMEFFK 390
F G A C ++MEF K
Sbjct: 340 FTGFRRACCAYQTWVMEFHK 359
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Capsicum annuum (taxid: 4072) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 390 | ||||||
| 342161927 | 364 | RecName: Full=Anthranilate N-methyltrans | 0.923 | 0.989 | 0.751 | 1e-164 | |
| 224128073 | 358 | catechol o-methyltransferase related [Po | 0.879 | 0.958 | 0.558 | 1e-120 | |
| 225453640 | 359 | PREDICTED: quercetin 3-O-methyltransfera | 0.915 | 0.994 | 0.525 | 1e-116 | |
| 224068173 | 359 | catechol o-methyltransferase [Populus tr | 0.879 | 0.955 | 0.535 | 1e-115 | |
| 284437809 | 377 | O-methyltransferase-like protein [Prunus | 0.864 | 0.893 | 0.542 | 1e-114 | |
| 255548061 | 359 | o-methyltransferase, putative [Ricinus c | 0.887 | 0.963 | 0.534 | 1e-114 | |
| 224068181 | 336 | catechol o-methyltransferase [Populus tr | 0.851 | 0.988 | 0.546 | 1e-112 | |
| 147785075 | 382 | hypothetical protein VITISV_028012 [Viti | 0.876 | 0.895 | 0.521 | 1e-111 | |
| 225453636 | 358 | PREDICTED: quercetin 3-O-methyltransfera | 0.876 | 0.955 | 0.521 | 1e-111 | |
| 268528131 | 356 | caffeic acid O-methyltransferase 3 [Goss | 0.869 | 0.952 | 0.506 | 1e-108 |
| >gi|342161927|sp|A9X7L0.1|ANMT_RUTGR RecName: Full=Anthranilate N-methyltransferase; Short=RgANMT gi|115315700|gb|ABI93949.1| anthranilate N-methyltransferase [Ruta graveolens] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 296/394 (75%), Positives = 324/394 (82%), Gaps = 34/394 (8%)
Query: 1 MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA--GE 58
MGSLSE + E EE+EEESYS AMQL+M +VLPMATQ+AIQLGVFEIIAKA G
Sbjct: 1 MGSLSESHTQYKHGVEVEEDEEESYSRAMQLSMAIVLPMATQSAIQLGVFEIIAKAPGGR 60
Query: 59 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG--GERLYALNPVSKYFVSNK 116
LSA EIA LQAQN KAP+MLDRMLRLLVSHRVL+CSVSG GERLY L VSKYFV ++
Sbjct: 61 LSASEIATILQAQNPKAPVMLDRMLRLLVSHRVLDCSVSGPAGERLYGLTSVSKYFVPDQ 120
Query: 117 DGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVME 176
DGASLG+FMALPLDKVFMESW +G+K AVME
Sbjct: 121 DGASLGNFMALPLDKVFMESW------------------------------MGVKGAVME 150
Query: 177 GGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGG 236
GGIPFNRVHGMHIFEYAS N +F++TYH AMFNHSTIA++RILEHY+GF+NV +LVDVGG
Sbjct: 151 GGIPFNRVHGMHIFEYASSNSKFSDTYHRAMFNHSTIALKRILEHYKGFENVTKLVDVGG 210
Query: 237 GFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILH 296
G GVTLSMI SKYP I+A+NFDLPHVVQDA SY GVEHVGGNMFESVPEGDAILMKWILH
Sbjct: 211 GLGVTLSMIASKYPHIQAINFDLPHVVQDAASYPGVEHVGGNMFESVPEGDAILMKWILH 270
Query: 297 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE 356
CWDD+ CLRILKNCYKA P NGKVIVMNS+VPE PEVSS+ARETSLLDVLLMTRDGGGRE
Sbjct: 271 CWDDEQCLRILKNCYKATPENGKVIVMNSVVPETPEVSSSARETSLLDVLLMTRDGGGRE 330
Query: 357 RTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390
RT+KE+TELAI AGFKGINFA CVCNL+IMEFFK
Sbjct: 331 RTQKEFTELAIGAGFKGINFACCVCNLHIMEFFK 364
|
Source: Ruta graveolens Species: Ruta graveolens Genus: Ruta Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128073|ref|XP_002320237.1| catechol o-methyltransferase related [Populus trichocarpa] gi|118481911|gb|ABK92890.1| unknown [Populus trichocarpa] gi|222861010|gb|EEE98552.1| catechol o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 210/376 (55%), Positives = 271/376 (72%), Gaps = 33/376 (8%)
Query: 18 EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVK 74
+E ++E++ +AMQLA+ VLPM +AIQLG+FEIIAKAG +LSA ++AAQL +N
Sbjct: 13 DEAKDENFGYAMQLALSSVLPMTMYSAIQLGIFEIIAKAGPDAKLSASDVAAQLPTKNPD 72
Query: 75 APMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFM 134
APMMLDR+LRLL SH VL CSV G ERLY+L PVSK++V NKDG SLG FMAL D VF+
Sbjct: 73 APMMLDRILRLLASHDVLGCSVDGSERLYSLAPVSKHYVRNKDGVSLGPFMALIQDNVFL 132
Query: 135 ESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYAS 194
+SW LKDAV+EGG+ F+RVHG H FEY
Sbjct: 133 QSWS------------------------------QLKDAVLEGGVAFDRVHGAHAFEYPG 162
Query: 195 GNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKA 254
+PRFN+ ++ AM+N +T+ +E +LE Y GF+N+++LV++GGG G T+ I SKYPQIK
Sbjct: 163 LDPRFNQVFNTAMYNQTTVVLENMLEAYTGFKNLKQLVEIGGGMGHTIKAIISKYPQIKG 222
Query: 255 VNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAV 314
+NFDLPHV++ APS GVEHVGG+MFESVP+GDAI +KWILH W DDHCL++LKNCYKA+
Sbjct: 223 INFDLPHVIEHAPSCPGVEHVGGDMFESVPKGDAIFLKWILHDWSDDHCLKLLKNCYKAI 282
Query: 315 PGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 374
P NGKVIVM S++ + S AAR S LDVL+MT++ GG+ERT+ E+ LA AGF+GI
Sbjct: 283 PDNGKVIVMESVLSITAKTSPAARAISQLDVLMMTQNPGGKERTEHEFMALATGAGFRGI 342
Query: 375 NFASCVCNLYIMEFFK 390
+ + VCN ++MEFFK
Sbjct: 343 KYEAFVCNFWVMEFFK 358
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453640|ref|XP_002267179.1| PREDICTED: quercetin 3-O-methyltransferase 1 isoform 1 [Vitis vinifera] gi|147785074|emb|CAN75449.1| hypothetical protein VITISV_028011 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/390 (52%), Positives = 275/390 (70%), Gaps = 33/390 (8%)
Query: 1 MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELS 60
MGS +E ++ ++ HE+ + E SY AMQL VLPM Q +I+LG+F+IIAK G+ S
Sbjct: 1 MGSSAEEKQSSRLCHEDGDVEPCSY--AMQLVTSSVLPMVMQTSIELGLFDIIAKLGQAS 58
Query: 61 APEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS-VSGGERLYALNPVSKYFVSNKDGA 119
A EIA++L +N +AP+MLDRML LL +H VL CS + G ER+YAL PVSKYF SN+DG
Sbjct: 59 ASEIASRLPTKNPEAPIMLDRMLYLLTTHSVLSCSAIDGDERVYALTPVSKYFASNQDGV 118
Query: 120 SLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGI 179
S G +AL DKVFM+SW LK+A++EGGI
Sbjct: 119 SFGPLLALIQDKVFMDSWS------------------------------QLKNAIIEGGI 148
Query: 180 PFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFG 239
PFNRVHG H FEY +PRFN+ ++ AMFNH+TI + +ILE Y+GF+++ R+VDVGGG G
Sbjct: 149 PFNRVHGSHAFEYPGKDPRFNQVFNTAMFNHTTIIVNKILESYKGFEHLTRVVDVGGGLG 208
Query: 240 VTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWD 299
TLS+ITSKYP I+A+NFDLPHV++ A ++ GVEH+GG+MFESVP+GDAI MKWILH W
Sbjct: 209 TTLSIITSKYPHIEAINFDLPHVIEHAVAFPGVEHIGGDMFESVPKGDAIFMKWILHDWS 268
Query: 300 DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTK 359
DDHCL++LKNCYKA+P +GKVI++ ++PEIPE S + D++++T++ GG+ERT+
Sbjct: 269 DDHCLKLLKNCYKALPEHGKVIIVEGVLPEIPEKGSTVKAICQTDLIMLTQNPGGKERTR 328
Query: 360 KEYTELAIAAGFKGINFASCVCNLYIMEFF 389
KE+ +LAI AGF GI + V ++ME F
Sbjct: 329 KEFLDLAIGAGFAGIRYECYVSCYWVMEIF 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068173|ref|XP_002302676.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844402|gb|EEE81949.1| catechol o-methyltransferase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/377 (53%), Positives = 266/377 (70%), Gaps = 34/377 (9%)
Query: 18 EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVK 74
+E ++E++ +AMQLA+ VLPM AIQLG+FEIIAKAG +LSA +IAA+L N
Sbjct: 13 DEAKDENFGYAMQLALSSVLPMTLHTAIQLGIFEIIAKAGPDVKLSAADIAAKLPTDNPD 72
Query: 75 APMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFM 134
P MLDR+LRLL SH+VL C V G ER Y+L PVS YFV N++G SL FMAL + V +
Sbjct: 73 TPKMLDRILRLLASHQVLCCFVDGSERFYSLAPVSMYFVRNQNGVSLAPFMALIHENVIL 132
Query: 135 ESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYAS 194
+SW LKDAV+EGG+ F+RVHG+H FEY
Sbjct: 133 QSWS------------------------------QLKDAVLEGGVAFHRVHGVHAFEYNG 162
Query: 195 GNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKA 254
+PRFN+ ++ AM+N +T+ +LE Y GF+N+++LVD+GGG G T+ +TSKYPQIK
Sbjct: 163 LDPRFNQVFNTAMYNQTTVVNGNMLEKYNGFKNLKQLVDIGGGLGHTMKAVTSKYPQIKG 222
Query: 255 VNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAV 314
+NFDLPHV++ AP+Y GVEHVGG+MFESVP+GDAI +KWILH W DDHCL++LKNCYKA+
Sbjct: 223 INFDLPHVIEHAPAYPGVEHVGGDMFESVPKGDAIFLKWILHNWSDDHCLKLLKNCYKAI 282
Query: 315 PGNGKVIVMNSIVPEIPEVSSAARETSLLDVL-LMTRDGGGRERTKKEYTELAIAAGFKG 373
P +GKVIVM S++P + S AA+ S LDVL +M+++ GG+ERT+ E+ LA AAGF+G
Sbjct: 283 PEDGKVIVMESVLPITAKTSPAAKAISQLDVLMMMSQNPGGKERTEDEFMALATAAGFRG 342
Query: 374 INFASCVCNLYIMEFFK 390
I F + VCN ++MEFFK
Sbjct: 343 IKFETFVCNFWVMEFFK 359
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|284437809|gb|ADB85561.1| O-methyltransferase-like protein [Prunus mume] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/378 (54%), Positives = 269/378 (71%), Gaps = 41/378 (10%)
Query: 24 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLD 80
S+ +AMQL L M+ Q+AI+LGVF+IIA+ G +LS+ IAA++ +N +APMM+D
Sbjct: 30 SFCYAMQLVGSSALSMSLQSAIKLGVFDIIAREGPDAKLSSSGIAAKIGTKNPEAPMMVD 89
Query: 81 RMLRLLVSHRVLECSV---SGG---ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFM 134
R+LRLL SH VL CS +GG +R+Y+L PVSKYFVS+++G SLG M L DKVFM
Sbjct: 90 RILRLLTSHSVLNCSAVAANGGSDFQRVYSLGPVSKYFVSDEEGGSLGPSMTLIQDKVFM 149
Query: 135 ESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYAS 194
ESW LKDAV+EGGIPFNRVHGMH FEY
Sbjct: 150 ESWS------------------------------QLKDAVVEGGIPFNRVHGMHAFEYPG 179
Query: 195 GNPRFNETYHEAMFNHSTIAMERILEHYEGFQ--NVERLVDVGGGFGVTLSMITSKYPQI 252
+PRFN+ ++ AMFNH+TI ++++L Y+G + N+ +LVDVGGG GVTL++ITS+Y I
Sbjct: 180 LDPRFNQVFNTAMFNHTTIVIKKLLHIYKGLEDKNLTQLVDVGGGLGVTLNLITSRYQHI 239
Query: 253 KAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYK 312
K +NFDLPHVV APSY GVEHVGG+MF SVP GDAI MKWILH W D+HCL++LKNCYK
Sbjct: 240 KGINFDLPHVVNHAPSYPGVEHVGGDMFASVPSGDAIFMKWILHDWSDEHCLKLLKNCYK 299
Query: 313 AVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372
A+P NGKVIV+ +++P +PE S+A + TS LDV++MT++ GG+ER+++E+ LA AGF
Sbjct: 300 AIPDNGKVIVVEALLPAMPETSTATKTTSQLDVVMMTQNPGGKERSEQEFMALATGAGFS 359
Query: 373 GINFASCVCNLYIMEFFK 390
GI + VCN ++MEFFK
Sbjct: 360 GIRYECFVCNFWVMEFFK 377
|
Source: Prunus mume Species: Prunus mume Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548061|ref|XP_002515087.1| o-methyltransferase, putative [Ricinus communis] gi|223545567|gb|EEF47071.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/380 (53%), Positives = 266/380 (70%), Gaps = 34/380 (8%)
Query: 15 HEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQL-QA 70
H +EE +E++ +AMQLA+G LPM+ AAI+LGVFEIIAKAG +LSA EI A++
Sbjct: 10 HPIDEEHDENFGYAMQLALGSALPMSLHAAIELGVFEIIAKAGPESKLSASEITAEIPDV 69
Query: 71 QNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLD 130
QN A + LDR+LRLL SH VL CS++G ERLY+LNPVSKYFV N+DG SLG FMAL D
Sbjct: 70 QNPDAAITLDRVLRLLASHNVLGCSLNGLERLYSLNPVSKYFVPNQDGISLGPFMALIQD 129
Query: 131 KVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIF 190
KVF++SW LKDAV+EGG PFN+ HG H F
Sbjct: 130 KVFLDSW------------------------------TKLKDAVLEGGSPFNKFHGTHCF 159
Query: 191 EYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP 250
Y+ + RFN ++ AMF+H+ + + +ILE Y+GF+ +++L+DVGGG G TL I SKYP
Sbjct: 160 GYSGLDSRFNHVFNTAMFHHTNLVITKILETYKGFKQLKQLIDVGGGLGHTLKAIISKYP 219
Query: 251 QIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNC 310
+K +NFDLPHVV+ AP+ GVEHV G+MFESVP+G+AI MKWILH W D+HCLR+LKNC
Sbjct: 220 HLKGINFDLPHVVKYAPAIPGVEHVAGDMFESVPKGEAIFMKWILHDWSDEHCLRLLKNC 279
Query: 311 YKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370
Y+A+P +GKVIVM++++P +PE AA+ D+++MT GG ERT+ E+ +A AAG
Sbjct: 280 YEALPDDGKVIVMDAVLPVMPETGKAAKANFQTDLVVMTVYEGGTERTEHEFLAMATAAG 339
Query: 371 FKGINFASCVCNLYIMEFFK 390
F+GI + C CN +IMEFFK
Sbjct: 340 FRGIRYVCCACNFWIMEFFK 359
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068181|ref|XP_002302677.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844403|gb|EEE81950.1| catechol o-methyltransferase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/366 (54%), Positives = 257/366 (70%), Gaps = 34/366 (9%)
Query: 29 MQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRL 85
MQLA+ VLPM AIQLG+FEIIAKAG +LSA +IAA+L N P MLDR+LRL
Sbjct: 1 MQLALSSVLPMTLHTAIQLGIFEIIAKAGPDVKLSAADIAAKLPTDNPDTPKMLDRILRL 60
Query: 86 LVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFF 145
L SH+VL C V G ER Y+L PVS YFV N++G SL FMAL + V ++SW
Sbjct: 61 LASHQVLCCFVDGSERFYSLAPVSMYFVRNQNGVSLAPFMALIQENVVLQSWS------- 113
Query: 146 FFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHE 205
LKDAV+EGG+ F+RVHG+H FEY +P+FN+ ++
Sbjct: 114 -----------------------QLKDAVLEGGVAFHRVHGVHGFEYNGLDPKFNQVFNT 150
Query: 206 AMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQD 265
AM+N +T+ +LE Y GF+N+++LVD+GGG G T+ ITSKYP IK +NFDLPHV++
Sbjct: 151 AMYNQTTVVNGFMLEKYNGFKNLKQLVDIGGGLGHTMKAITSKYPHIKGINFDLPHVIEH 210
Query: 266 APSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325
AP+Y GVEHVGG+MFESVP+GDAI +KWILH W DDHCL++LKNCYKA+PG+GKVIVM S
Sbjct: 211 APAYPGVEHVGGDMFESVPKGDAIFLKWILHNWSDDHCLKLLKNCYKAIPGDGKVIVMES 270
Query: 326 IVPEIPEVSSAARETSLLDVLLM-TRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLY 384
++P + S AA+ S LDVL+M T++ GG+ERT+ E+ LA AAGF+GI F + VCN +
Sbjct: 271 VLPITAKTSPAAKAISQLDVLMMITQNPGGKERTEDEFMALATAAGFRGIKFETFVCNFW 330
Query: 385 IMEFFK 390
+MEFFK
Sbjct: 331 VMEFFK 336
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147785075|emb|CAN75450.1| hypothetical protein VITISV_028012 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/374 (52%), Positives = 262/374 (70%), Gaps = 32/374 (8%)
Query: 18 EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPM 77
E+ + E S+AMQL VLPM Q +I+LG+F+IIA G+ SA EIA++L +N +AP+
Sbjct: 16 EDGDVEPCSYAMQLVTSSVLPMVMQTSIELGLFDIIANLGQASASEIASRLPTKNQEAPI 75
Query: 78 MLDRMLRLLVSHRVLECS-VSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMES 136
+LDRML LL +H VL CS + G ER+YAL PVSKYF SN+ G S G +AL DKVFM+S
Sbjct: 76 ILDRMLYLLTTHSVLSCSAIDGDERVYALTPVSKYFASNQ-GVSFGPLLALIQDKVFMDS 134
Query: 137 WYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYASGN 196
W LK+A++EGGIPFNRVHG H FEY +
Sbjct: 135 WS------------------------------QLKNAIIEGGIPFNRVHGSHAFEYPGKD 164
Query: 197 PRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVN 256
PRFN+ ++ AMFNH+T+ + +ILE Y+GF+++ R+VDVGGG G TLS+ITSKYP I+A+N
Sbjct: 165 PRFNQVFNTAMFNHTTVIVNKILESYKGFEHLTRVVDVGGGLGTTLSIITSKYPHIEAIN 224
Query: 257 FDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPG 316
FDLPHV++ A +Y GV+H+GG+MF SVP+GDAI MKWILH W DDHCL++LKNCYKA+P
Sbjct: 225 FDLPHVIEHAVAYPGVKHIGGDMFVSVPKGDAIFMKWILHDWSDDHCLKLLKNCYKALPE 284
Query: 317 NGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINF 376
+GKVIV+ ++PEIPE S + D++++T++ GG+ERT+KE+ +L I AGF GI +
Sbjct: 285 HGKVIVVEGVLPEIPEKGSTVKAICQTDLIMLTQNPGGKERTRKEFLDLTIGAGFAGIRY 344
Query: 377 ASCVCNLYIMEFFK 390
V ++ME FK
Sbjct: 345 ECYVSCYWVMEIFK 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453636|ref|XP_002266899.1| PREDICTED: quercetin 3-O-methyltransferase 1 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/374 (52%), Positives = 262/374 (70%), Gaps = 32/374 (8%)
Query: 18 EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPM 77
E+ + E S+AMQL VLPM Q +I+LG+F+IIA G+ SA EIA++L +N +AP+
Sbjct: 16 EDGDVEPCSYAMQLVTSSVLPMVMQTSIELGLFDIIANLGQASASEIASRLPTKNQEAPI 75
Query: 78 MLDRMLRLLVSHRVLECS-VSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMES 136
+LDRML LL +H VL CS + G ER+YAL PVSKYF SN+ G S G +AL DKVFM+S
Sbjct: 76 ILDRMLYLLTTHSVLSCSAIDGDERVYALTPVSKYFASNQ-GVSFGPLLALIQDKVFMDS 134
Query: 137 WYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYASGN 196
W LK+A++EGGIPFNRVHG H FEY +
Sbjct: 135 WS------------------------------QLKNAIIEGGIPFNRVHGSHAFEYPGKD 164
Query: 197 PRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVN 256
PRFN+ ++ AMFNH+T+ + +ILE Y+GF+++ R+VDVGGG G TLS+ITSKYP I+A+N
Sbjct: 165 PRFNQVFNTAMFNHTTVIVNKILESYKGFEHLTRVVDVGGGLGTTLSIITSKYPHIEAIN 224
Query: 257 FDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPG 316
FDLPHV++ A +Y GV+H+GG+MF SVP+GDAI MKWILH W DDHCL++LKNCYKA+P
Sbjct: 225 FDLPHVIEHAVAYPGVKHIGGDMFVSVPKGDAIFMKWILHDWSDDHCLKLLKNCYKALPE 284
Query: 317 NGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINF 376
+GKVIV+ ++PEIPE S + D++++T++ GG+ERT+KE+ +L I AGF GI +
Sbjct: 285 HGKVIVVEGVLPEIPEKGSTVKAICQTDLIMLTQNPGGKERTRKEFLDLTIGAGFAGIRY 344
Query: 377 ASCVCNLYIMEFFK 390
V ++ME FK
Sbjct: 345 ECYVSCYWVMEIFK 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|268528131|gb|ACZ06242.1| caffeic acid O-methyltransferase 3 [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/377 (50%), Positives = 259/377 (68%), Gaps = 38/377 (10%)
Query: 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMM 78
EES+S+A+Q+ VLPM+ AA+QL +F I+AK G +LSA EIAAQL N +A M
Sbjct: 10 EESFSYALQIVTSSVLPMSMHAAVQLDIFGIMAKCGPDAKLSAKEIAAQLATNNSEAASM 69
Query: 79 LDRMLRLLVSHRVLECSVSGGER-----LYALNPVSKYFVSNKDGASLGHFMALPLDKVF 133
LDR+L LL SH ++ CSV E+ LY+L PVSK+FV N+DG SLG MAL DKVF
Sbjct: 70 LDRILLLLASHGIVGCSVVDEEKGNPRKLYSLTPVSKFFVRNEDGVSLGPLMALLQDKVF 129
Query: 134 MESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYA 193
++SW LKDA++EGG+PF+RVHG + FEY
Sbjct: 130 IDSWS------------------------------QLKDAIIEGGVPFDRVHGSNTFEYP 159
Query: 194 SGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIK 253
+PRFN+ ++ AM NH+++ ++ IL +Y+GFQ + LVDVGGG G+TL++ITSKYP IK
Sbjct: 160 GKDPRFNQIFNTAMINHTSLVLKEILHNYKGFQQLSSLVDVGGGLGITLNLITSKYPSIK 219
Query: 254 AVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKA 313
+NFDLPHV+Q AP+Y GV+HVG +MFESVP+G AI MKWILH W DHCL++LKNCY A
Sbjct: 220 GINFDLPHVIQHAPAYPGVQHVGRDMFESVPKGAAIFMKWILHDWSGDHCLKLLKNCYNA 279
Query: 314 VPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKG 373
+P +GKVIV+ ++VP++PE ++ R + +D++++ +D GG+ERTK E+ LA AGF G
Sbjct: 280 IPKDGKVIVVEAVVPDVPEANAYLRSITQVDMVMLAQDPGGKERTKSEFEALATKAGFSG 339
Query: 374 INFASCVCNLYIMEFFK 390
I + C+ +IMEFFK
Sbjct: 340 IRYECFACSYWIMEFFK 356
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 390 | ||||||
| TAIR|locus:2153423 | 363 | OMT1 "AT5G54160" [Arabidopsis | 0.566 | 0.608 | 0.529 | 3e-93 | |
| UNIPROTKB|Q84N28 | 360 | OMT1 "Flavone O-methyltransfer | 0.566 | 0.613 | 0.502 | 4.5e-82 | |
| UNIPROTKB|Q6ZD89 | 368 | ROMT-9 "Flavone 3'-O-methyltra | 0.566 | 0.600 | 0.481 | 3.6e-78 | |
| TAIR|locus:2204695 | 381 | AT1G77530 [Arabidopsis thalian | 0.564 | 0.577 | 0.475 | 4.1e-73 | |
| TAIR|locus:2204680 | 381 | AT1G77520 [Arabidopsis thalian | 0.564 | 0.577 | 0.461 | 2e-71 | |
| TAIR|locus:2038026 | 352 | AT1G33030 [Arabidopsis thalian | 0.610 | 0.676 | 0.436 | 5.3e-71 | |
| TAIR|locus:2199607 | 373 | IGMT1 "indole glucosinolate O- | 0.594 | 0.621 | 0.45 | 1.4e-68 | |
| TAIR|locus:2199587 | 373 | IGMT2 "indole glucosinolate O- | 0.594 | 0.621 | 0.441 | 1.6e-67 | |
| TAIR|locus:2199582 | 373 | IGMT4 "indole glucosinolate O- | 0.594 | 0.621 | 0.437 | 3.3e-67 | |
| TAIR|locus:2164087 | 378 | AT5G53810 [Arabidopsis thalian | 0.566 | 0.584 | 0.432 | 5.4e-67 |
| TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 3.0e-93, Sum P(2) = 3.0e-93
Identities = 117/221 (52%), Positives = 164/221 (74%)
Query: 170 LKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVE 229
LKDA+++GGIPFN+ +GM FEY +PRFN+ ++ M NHSTI M++ILE Y+GF+ +
Sbjct: 141 LKDAILDGGIPFNKAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYKGFEGLT 200
Query: 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAI 289
LVDVGGG G TL MI SKYP +K +NFDLPHV++DAPS+ G+EHVGG+MF SVP+GDAI
Sbjct: 201 SLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHPGIEHVGGDMFVSVPKGDAI 260
Query: 290 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT 349
MKWI H W D+HC++ LKNCY+++P +GKVI+ I+PE P+ S + ++ +D +++
Sbjct: 261 FMKWICHDWSDEHCVKFLKNCYESLPEDGKVILAECILPETPDSSLSTKQVVHVDCIMLA 320
Query: 350 RDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390
+ GG+ERT+KE+ LA A+GFKGI + ++E K
Sbjct: 321 HNPGGKERTEKEFEALAKASGFKGIKVVCDAFGVNLIELLK 361
|
|
| UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)] | Back alignment and assigned GO terms |
|---|
Score = 626 (225.4 bits), Expect = 4.5e-82, Sum P(2) = 4.5e-82
Identities = 111/221 (50%), Positives = 154/221 (69%)
Query: 170 LKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVE 229
LKDAV++GGIPFN+ +GM FEY +PRFN ++E M NHS I +++LE Y+GF+ +
Sbjct: 140 LKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLEVYKGFEGLG 199
Query: 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAI 289
+VDVGGG G T+ IT+ YP IK +NFDLPHV+ +A + GV HVGG+MF+ VP GDAI
Sbjct: 200 TIVDVGGGVGATVGAITAAYPAIKGINFDLPHVISEAQPFPGVTHVGGDMFQKVPSGDAI 259
Query: 290 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT 349
LMKWILH W D+HC +LKNCY A+P +GKV+++ I+P PE + A+ +D++++
Sbjct: 260 LMKWILHDWSDEHCATLLKNCYDALPAHGKVVLVECILPVNPEATPKAQGVFHVDMIMLA 319
Query: 350 RDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390
+ GGRER ++E+ LA AGFK I N + +EF K
Sbjct: 320 HNPGGRERYEREFEALAKGAGFKAIKTTYIYANAFAIEFTK 360
|
|
| UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 608 (219.1 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
Identities = 107/222 (48%), Positives = 155/222 (69%)
Query: 170 LKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVE 229
LKDAV++GGIPFN+ +GM FEY + RFN ++E M NHS I +++L+ Y GF
Sbjct: 147 LKDAVLDGGIPFNKAYGMTAFEYHGTDARFNRVFNEGMKNHSVIITKKLLDLYTGFDAAS 206
Query: 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEG-DA 288
+VDVGGG G T++ + S++P I+ +N+DLPHV+ +AP + GVEHVGG+MF SVP G DA
Sbjct: 207 TVVDVGGGVGATVAAVVSRHPHIRGINYDLPHVISEAPPFPGVEHVGGDMFASVPRGGDA 266
Query: 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM 348
ILMKWILH W D+HC R+LKNCY A+P +GKV+V+ ++PE + ++ + +D++++
Sbjct: 267 ILMKWILHDWSDEHCARLLKNCYDALPEHGKVVVVECVLPESSDATAREQGVFHVDMIML 326
Query: 349 TRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390
+ GG+ER ++E+ ELA AAGF G N + +EF K
Sbjct: 327 AHNPGGKERYEREFRELARAAGFTGFKATYIYANAWAIEFTK 368
|
|
| TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 560 (202.2 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 106/223 (47%), Positives = 150/223 (67%)
Query: 170 LKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVE 229
LKD ++EG F+ H M +FEY S + +F++ +H AM ST+ M+++LE Y GF++V
Sbjct: 160 LKDVILEGKDAFSSAHDMRLFEYISSDDQFSKLFHRAMSESSTMVMKKVLEEYRGFEDVN 219
Query: 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAI 289
LVDVGGG G L +ITSKYP IK VNFDL V+ AP Y GV+HV G+MF VP+GDAI
Sbjct: 220 TLVDVGGGIGTILGLITSKYPHIKGVNFDLAQVLTQAPFYPGVKHVSGDMFIEVPKGDAI 279
Query: 290 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL-LDVLLM 348
MKWILH W D+ C++ILKNC+K++P GKVI++ I P P+ + + T L +D+L++
Sbjct: 280 FMKWILHDWGDEDCIKILKNCWKSLPEKGKVIIVEMITPMEPKPNDFSCNTVLGMDLLML 339
Query: 349 TRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLY-IMEFFK 390
T+ GG+ER+ ++ LA A+GF C+ Y ++EF K
Sbjct: 340 TQCSGGKERSLSQFENLAFASGFLLCEII-CLSYSYSVIEFHK 381
|
|
| TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 554 (200.1 bits), Expect = 2.0e-71, Sum P(2) = 2.0e-71
Identities = 103/223 (46%), Positives = 148/223 (66%)
Query: 170 LKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVE 229
LKD ++EG FN HGM IFEY + + F E ++ AM ST+ M+++L+ Y GF++V
Sbjct: 160 LKDVILEGRDAFNSAHGMKIFEYINSDQPFAELFNRAMSEPSTMIMKKVLDVYRGFEDVN 219
Query: 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAI 289
LVDVGGG G L ++TSKYP IK VNFDL V+ AP Y GVEHV G+MF VP+GDA+
Sbjct: 220 TLVDVGGGNGTVLGLVTSKYPHIKGVNFDLAQVLTQAPFYPGVEHVSGDMFVEVPKGDAV 279
Query: 290 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL-LDVLLM 348
MKWILH W D+ C++ILKNC+K++P GK+I++ + P+ P+ + T +D+L++
Sbjct: 280 FMKWILHDWGDEDCIKILKNCWKSLPEKGKIIIVEFVTPKEPKGGDLSSNTVFAMDLLML 339
Query: 349 TRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLY-IMEFFK 390
T+ GG+ER+ ++ LA A+GF C+ Y ++EF K
Sbjct: 340 TQCSGGKERSLSQFENLAFASGFLRCEII-CLAYSYSVIEFHK 381
|
|
| TAIR|locus:2038026 AT1G33030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
Identities = 107/245 (43%), Positives = 152/245 (62%)
Query: 151 GQIYIVVNLSNFKNACRL--GLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMF 208
G + +VNL K + LKD+V+EGG+PFN HG E + RF E + +M
Sbjct: 108 GSLAPMVNLFQDKVVTDMWYNLKDSVLEGGLPFNNTHGSSAVELVGSDSRFREVFQSSMK 167
Query: 209 NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDLPHVVQDAP 267
+ + +E L++Y GF V+ LVDVGGG G LS I SK+ I KA+NFDLP V+ +
Sbjct: 168 GFNEVFIEEFLKNYNGFDGVKSLVDVGGGDGSLLSRIISKHTHIIKAINFDLPTVINTSL 227
Query: 268 SYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327
G+EHV G+MF + P+G+AI MKW+LH WDDDHC++IL NCY+++P NGKVIV++ ++
Sbjct: 228 PSPGIEHVAGDMFTNTPKGEAIFMKWMLHSWDDDHCVKILSNCYQSLPSNGKVIVVDMVI 287
Query: 328 PEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN--FASCVCNLYI 385
PE P + R ++ +M + G+ERTKKE+ LA AGF + F S +C +
Sbjct: 288 PEFPGDTLLDRSLFQFELFMMNMNPSGKERTKKEFEILARLAGFSNVQVPFTS-LC-FSV 345
Query: 386 MEFFK 390
+EF K
Sbjct: 346 LEFHK 350
|
|
| TAIR|locus:2199607 IGMT1 "indole glucosinolate O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
Identities = 108/240 (45%), Positives = 156/240 (65%)
Query: 155 IVVNLSN-FKNACRLGLKDAVMEGGIPFNRVHG-MHIFEYASGNPRFNETYHEAMFNHST 212
++VN + F N LKD V+EGG F R HG M +F+Y + RF++ +++ F T
Sbjct: 138 VIVNFDSVFLNTWAQ-LKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQTGF---T 193
Query: 213 IAM-ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAG 271
IA+ ++ LE YEGF+ V+ LVDVGGG G TL ++TSKYP IK +NFDL + APSY G
Sbjct: 194 IAVVKKALEVYEGFKGVKVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPSYPG 253
Query: 272 VEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP 331
VEHV G+MF VP GDA+++K ILH W D+ C++ILKNC+K++P NGKV+V+ + P+
Sbjct: 254 VEHVAGDMFVDVPTGDAMILKRILHDWTDEDCVKILKNCWKSLPENGKVVVIELVTPDEA 313
Query: 332 EVSSAARETSL-LDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390
E + +D+L+ T+ GG+ER++ E+ LA A+GF F + +I+EF K
Sbjct: 314 ENGDINANIAFDMDMLMFTQCSGGKERSRAEFEALAAASGFTHCKFVCQAYHCWIIEFCK 373
|
|
| TAIR|locus:2199587 IGMT2 "indole glucosinolate O-methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 512 (185.3 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
Identities = 106/240 (44%), Positives = 154/240 (64%)
Query: 155 IVVNLSN-FKNACRLGLKDAVMEGGIPFNRVHG-MHIFEYASGNPRFNETYHEAMFNHST 212
++VN + F N LKD V+EGG F R HG M +F+Y + RF++ +++ F T
Sbjct: 138 VIVNFDSVFLNTWAQ-LKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQTGF---T 193
Query: 213 IAM-ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAG 271
IA+ ++ LE Y+GF+ V LVDVGGG G TL ++TSKYP IK +NFDL + APSY G
Sbjct: 194 IAVVKKALEVYQGFKGVNVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPSYPG 253
Query: 272 VEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP 331
VEHV G+MF VP GDA+++K ILH W D+ C++ILKNC+K++P NGKV+V+ + P+
Sbjct: 254 VEHVAGDMFVDVPTGDAMILKRILHDWTDEDCVKILKNCWKSLPENGKVVVIELVTPDEA 313
Query: 332 EVSSAARETSL-LDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390
E + +D+L+ T+ GG+ER++ E+ LA A+ F F + +I+EF K
Sbjct: 314 ENGDINANIAFDMDMLMFTQCSGGKERSRAEFEALAAASCFTHCKFVCQAYHCWIIEFCK 373
|
|
| TAIR|locus:2199582 IGMT4 "indole glucosinolate O-methyltransferase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 511 (184.9 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
Identities = 105/240 (43%), Positives = 154/240 (64%)
Query: 155 IVVNLSN-FKNACRLGLKDAVMEGGIPFNRVHG-MHIFEYASGNPRFNETYHEAMFNHST 212
++VN + F N LKD V+EGG F R HG M +F+Y + RF++ +++ F T
Sbjct: 138 VIVNFDSVFLNTWAQ-LKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQTGF---T 193
Query: 213 IAM-ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAG 271
IA+ ++ LE Y+GF+ V LVDVGGG G TL ++ SKYP IK +NFDL + APSY G
Sbjct: 194 IAVVKKALEVYQGFKGVNVLVDVGGGVGNTLGVVASKYPNIKGINFDLTCALAQAPSYPG 253
Query: 272 VEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP 331
VEHV G+MF VP GDA+++K ILH W D+ C++ILKNC+K++P +GKV+V+ + P+
Sbjct: 254 VEHVAGDMFVDVPTGDAMILKRILHDWTDEDCVKILKNCWKSLPESGKVVVIELVTPDEA 313
Query: 332 EVSSAARETSL-LDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390
E + +D+L+ T+ GG+ER++ E+ LA A+GF F + +I+EF K
Sbjct: 314 ENGDINANIAFDMDMLMFTQCSGGKERSRAEFEALAAASGFTHCKFVCQAYHCWIIEFCK 373
|
|
| TAIR|locus:2164087 AT5G53810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 514 (186.0 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 96/222 (43%), Positives = 141/222 (63%)
Query: 170 LKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVE 229
L+D ++EG F+ HGM +FEY + RF + ++ AM ST+ E++L+ YEGF++V+
Sbjct: 157 LEDVILEGRDAFSSAHGMKLFEYIQADERFGKVFNRAMLESSTMVTEKVLKFYEGFKDVK 216
Query: 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAI 289
LVDVGGG G TL +ITSKYP + +NFDL V+ +A SY GV HV G+MF +P+GDAI
Sbjct: 217 TLVDVGGGLGNTLGLITSKYPHLIGINFDLAPVLANAHSYPGVNHVAGDMFIKIPKGDAI 276
Query: 290 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP-EIPEVSSAARETSLLDVLLM 348
MKWILH W D+ C+ ILKNC+K++ NGK+I++ + P E + +D+ ++
Sbjct: 277 FMKWILHDWTDEQCVAILKNCWKSLEENGKLIIVEMVTPVEAKSGDICSNIVFGMDMTML 336
Query: 349 TRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390
T+ GG+ER E+ LA A+GF V ++E +K
Sbjct: 337 TQCSGGKERDLYEFENLAYASGFSRCAIVCAVYPFSVIEIYK 378
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6ZD89 | OMT1_ORYSJ | 2, ., 1, ., 1, ., 7, 6 | 0.4105 | 0.8564 | 0.9076 | yes | no |
| A9X7L0 | ANMT_RUTGR | 2, ., 1, ., 1, ., 1, 1, 1 | 0.7512 | 0.9230 | 0.9890 | N/A | no |
| Q9FK25 | OMT1_ARATH | 2, ., 1, ., 1, ., 7, 6 | 0.4595 | 0.9102 | 0.9779 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | COMT4 | SubName- Full=Putative uncharacterized protein; (358 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 390 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 1e-101 | |
| pfam08100 | 50 | pfam08100, Dimerisation, Dimerisation domain | 4e-15 | |
| TIGR02716 | 306 | TIGR02716, C20_methyl_CrtF, C-20 methyltransferase | 2e-10 | |
| PRK00137 | 147 | PRK00137, rplI, 50S ribosomal protein L9; Reviewed | 4e-04 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 300 bits (770), Expect = e-101
Identities = 115/269 (42%), Positives = 147/269 (54%), Gaps = 34/269 (12%)
Query: 99 GERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVN 158
G Y L P SK V +D SL + + D +ESW
Sbjct: 3 GGEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWA-------------------- 42
Query: 159 LSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERI 218
LKDAV EGG PF R GM FEY +P FN ++ AM HS + M++I
Sbjct: 43 ----------HLKDAVREGGPPFERAFGMPFFEYLGADPEFNRVFNRAMAAHSRLVMKKI 92
Query: 219 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGN 278
LE F + LVDVGGG G + I YP IK + FDLPHV+ DAPS VE VGG+
Sbjct: 93 LETAFDFSGLSSLVDVGGGTGALAAAIVRAYPHIKGIVFDLPHVIADAPSADRVEFVGGD 152
Query: 279 MFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR 338
FESVPE DAIL+KW+LH W D+ C++ILK CY+A+P GKVIV+ ++PE P+
Sbjct: 153 FFESVPEADAILLKWVLHDWSDEDCVKILKRCYEALPPGGKVIVVEMVLPEDPD-DDLET 211
Query: 339 ETSLLDVL-LMTRDGGGRERTKKEYTELA 366
E LLD+ L+ GG+ERT+KE+ +L
Sbjct: 212 EVLLLDLNMLVLN--GGKERTEKEWRKLL 238
|
This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 4e-15
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 39 MATQAAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87
M + AI+LG+ +IIAK G+ LS E+A++L N +AP+MLDR+LRLL
Sbjct: 1 MVLKCAIELGIPDIIAKHGKPLSPSELASKLPTVNPEAPVMLDRLLRLLA 50
|
This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50 |
| >gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 2e-10
Identities = 26/142 (18%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 199 FNETYHEA---MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAV 255
+ E H + + ++ V++++DVGGG G + + +P++ +
Sbjct: 125 YFEEIHRSNAKFAIQLLLEEAKL-------DGVKKMIDVGGGIGDISAAMLKHFPELDST 177
Query: 256 NFDLPH---VVQDAPSYAG----VEHVGGNMF-ESVPEGDAILMKWILHCWDDDHCLRIL 307
+LP +V + + G + + +++ ES PE DA+L IL+ ++ +
Sbjct: 178 ILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMC 237
Query: 308 KNCYKAVPGNGKVIVMNSIVPE 329
K + A+ G++++++ ++ +
Sbjct: 238 KKAFDAMRSGGRLLILDMVIDD 259
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306 |
| >gnl|CDD|234659 PRK00137, rplI, 50S ribosomal protein L9; Reviewed | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 4e-04
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 17/73 (23%)
Query: 9 KLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-------LSA 61
+L ++ E E + E + A LA ++ I AKAGE ++
Sbjct: 46 QLEARRAELEAKAAEELAEAEALA----------EKLEGLTVTIKAKAGEDGKLFGSVTT 95
Query: 62 PEIAAQLQAQNVK 74
+IA L+ Q ++
Sbjct: 96 KDIAEALKKQGIE 108
|
Length = 147 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 390 | |||
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 100.0 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 100.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.8 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.77 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.77 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.76 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.74 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.74 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.74 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.73 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.71 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.69 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.67 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.67 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.66 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.66 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.64 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.63 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.63 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.63 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.63 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.62 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.62 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.62 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.62 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.61 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.6 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.6 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.6 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.6 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.59 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.55 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.55 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.55 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.54 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.53 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.53 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.53 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.52 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.51 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.47 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.47 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.47 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.46 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.46 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.46 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.46 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.45 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.45 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.44 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.44 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.43 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.43 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.43 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.4 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.37 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.36 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.35 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.35 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.34 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.33 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.33 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.32 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.31 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.3 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.29 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.29 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.27 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.25 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.24 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.23 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.23 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.23 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.22 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.22 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.22 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.21 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.2 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.18 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.17 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.16 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.15 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.14 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.14 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.13 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.12 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.1 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.09 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.09 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.06 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.06 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.06 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.05 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.03 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.03 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.02 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.02 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.01 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.01 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.01 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.99 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.95 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.95 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.94 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.93 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.93 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.92 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.91 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.89 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.88 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.87 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.86 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.84 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.83 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.83 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.83 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.82 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.82 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.82 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.76 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.74 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.74 | |
| PLN02366 | 308 | spermidine synthase | 98.73 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.72 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.71 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.7 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.69 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.67 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.67 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.65 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.64 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.63 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.63 | |
| PF08100 | 51 | Dimerisation: Dimerisation domain; InterPro: IPR01 | 98.62 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.6 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.6 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.58 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.58 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.57 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.56 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.55 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.54 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.52 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.51 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.51 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.48 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.48 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.46 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.42 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.39 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.36 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.35 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.35 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.31 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.29 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.27 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.25 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.23 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.22 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.22 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.22 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.21 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.2 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.19 | |
| PLN02476 | 278 | O-methyltransferase | 98.19 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.18 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.18 | |
| PLN02823 | 336 | spermine synthase | 98.17 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.14 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.14 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.11 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.1 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.04 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.03 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.03 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.01 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.0 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.0 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.0 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.97 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.96 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.96 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.94 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 97.94 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.93 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.89 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.87 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.85 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.84 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.8 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.8 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.77 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.73 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.69 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.65 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.64 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.63 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.63 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.59 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 97.58 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.58 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.57 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.55 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.55 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.53 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.53 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.47 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.36 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.34 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.32 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.25 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.24 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.23 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.22 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.2 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.19 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.17 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.17 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.15 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.13 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.13 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.09 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 97.07 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.92 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.92 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.91 | |
| smart00346 | 91 | HTH_ICLR helix_turn_helix isocitrate lyase regulat | 96.89 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 96.88 | |
| smart00550 | 68 | Zalpha Z-DNA-binding domain in adenosine deaminase | 96.87 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.83 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.77 | |
| PF09339 | 52 | HTH_IclR: IclR helix-turn-helix domain; InterPro: | 96.68 | |
| PRK10141 | 117 | DNA-binding transcriptional repressor ArsR; Provis | 96.67 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.64 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.64 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 96.62 | |
| PF12840 | 61 | HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ | 96.62 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.62 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.57 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 96.56 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.52 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.51 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.51 | |
| PF13412 | 48 | HTH_24: Winged helix-turn-helix DNA-binding; PDB: | 96.5 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.48 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.46 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.46 | |
| PF01978 | 68 | TrmB: Sugar-specific transcriptional regulator Trm | 96.43 | |
| PHA00738 | 108 | putative HTH transcription regulator | 96.4 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.22 | |
| PF13463 | 68 | HTH_27: Winged helix DNA-binding domain; PDB: 3GFL | 96.17 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.16 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.14 | |
| PF01022 | 47 | HTH_5: Bacterial regulatory protein, arsR family; | 96.12 | |
| PRK15090 | 257 | DNA-binding transcriptional regulator KdgR; Provis | 96.09 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.05 | |
| TIGR02337 | 118 | HpaR homoprotocatechuate degradation operon regula | 96.01 | |
| PF01047 | 59 | MarR: MarR family; InterPro: IPR000835 The MarR-ty | 96.0 | |
| PF12802 | 62 | MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP | 95.98 | |
| COG1414 | 246 | IclR Transcriptional regulator [Transcription] | 95.95 | |
| PRK11512 | 144 | DNA-binding transcriptional repressor MarR; Provis | 95.89 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 95.75 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.75 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 95.73 | |
| PF13601 | 80 | HTH_34: Winged helix DNA-binding domain; PDB: 1UB9 | 95.72 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 95.68 | |
| PRK11569 | 274 | transcriptional repressor IclR; Provisional | 95.64 | |
| PRK10163 | 271 | DNA-binding transcriptional repressor AllR; Provis | 95.63 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.63 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.55 | |
| TIGR02431 | 248 | pcaR_pcaU beta-ketoadipate pathway transcriptional | 95.5 | |
| PF02082 | 83 | Rrf2: Transcriptional regulator; InterPro: IPR0009 | 95.48 | |
| PF14947 | 77 | HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_ | 95.48 | |
| PRK09834 | 263 | DNA-binding transcriptional activator MhpR; Provis | 95.42 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 95.4 | |
| cd00092 | 67 | HTH_CRP helix_turn_helix, cAMP Regulatory protein | 95.34 | |
| PRK10857 | 164 | DNA-binding transcriptional regulator IscR; Provis | 95.32 | |
| smart00347 | 101 | HTH_MARR helix_turn_helix multiple antibiotic resi | 95.29 | |
| COG3355 | 126 | Predicted transcriptional regulator [Transcription | 95.28 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.27 | |
| PF09012 | 69 | FeoC: FeoC like transcriptional regulator; InterPr | 95.25 | |
| smart00419 | 48 | HTH_CRP helix_turn_helix, cAMP Regulatory protein. | 95.23 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 95.17 | |
| PF08220 | 57 | HTH_DeoR: DeoR-like helix-turn-helix domain; Inter | 95.1 | |
| COG2345 | 218 | Predicted transcriptional regulator [Transcription | 95.06 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 95.03 | |
| TIGR02010 | 135 | IscR iron-sulfur cluster assembly transcription fa | 95.0 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 95.0 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 94.95 | |
| PRK11050 | 152 | manganese transport regulator MntR; Provisional | 94.93 | |
| PF04703 | 62 | FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. | 94.91 | |
| TIGR01889 | 109 | Staph_reg_Sar staphylococcal accessory regulator f | 94.87 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 94.86 | |
| PRK03902 | 142 | manganese transport transcriptional regulator; Pro | 94.85 | |
| smart00418 | 66 | HTH_ARSR helix_turn_helix, Arsenical Resistance Op | 94.58 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 94.57 | |
| TIGR02702 | 203 | SufR_cyano iron-sulfur cluster biosynthesis transc | 94.5 | |
| smart00420 | 53 | HTH_DEOR helix_turn_helix, Deoxyribose operon repr | 94.32 | |
| TIGR00738 | 132 | rrf2_super rrf2 family protein (putative transcrip | 94.3 | |
| TIGR01884 | 203 | cas_HTH CRISPR locus-related DNA-binding protein. | 94.2 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 94.18 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 94.09 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 94.04 | |
| COG1959 | 150 | Predicted transcriptional regulator [Transcription | 93.98 | |
| cd00090 | 78 | HTH_ARSR Arsenical Resistance Operon Repressor and | 93.91 | |
| PF04967 | 53 | HTH_10: HTH DNA binding domain; InterPro: IPR00705 | 93.66 | |
| PRK06266 | 178 | transcription initiation factor E subunit alpha; V | 93.61 | |
| PRK11920 | 153 | rirA iron-responsive transcriptional regulator; Re | 93.6 | |
| COG4190 | 144 | Predicted transcriptional regulator [Transcription | 93.56 | |
| PF01726 | 65 | LexA_DNA_bind: LexA DNA binding domain; InterPro: | 93.51 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 93.5 | |
| COG4742 | 260 | Predicted transcriptional regulator [Transcription | 93.42 | |
| PRK03573 | 144 | transcriptional regulator SlyA; Provisional | 93.38 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 93.36 | |
| COG1321 | 154 | TroR Mn-dependent transcriptional regulator [Trans | 93.33 | |
| TIGR02944 | 130 | suf_reg_Xantho FeS assembly SUF system regulator, | 93.29 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 93.25 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 93.2 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 93.19 | |
| PRK11014 | 141 | transcriptional repressor NsrR; Provisional | 93.19 | |
| TIGR00122 | 69 | birA_repr_reg BirA biotin operon repressor domain. | 93.14 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 93.11 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 93.08 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 93.01 | |
| smart00344 | 108 | HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto | 92.82 | |
| PRK13777 | 185 | transcriptional regulator Hpr; Provisional | 92.65 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 92.55 | |
| PRK14165 | 217 | winged helix-turn-helix domain-containing protein/ | 92.47 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 92.47 | |
| PF01325 | 60 | Fe_dep_repress: Iron dependent repressor, N-termin | 92.43 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 92.36 | |
| COG4189 | 308 | Predicted transcriptional regulator [Transcription | 92.3 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 92.28 | |
| PF01638 | 90 | HxlR: HxlR-like helix-turn-helix; InterPro: IPR002 | 92.26 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 92.2 | |
| COG1846 | 126 | MarR Transcriptional regulators [Transcription] | 92.16 | |
| PF08279 | 55 | HTH_11: HTH domain; InterPro: IPR013196 Winged hel | 91.91 | |
| PRK15431 | 78 | ferrous iron transport protein FeoC; Provisional | 91.79 | |
| PF08461 | 66 | HTH_12: Ribonuclease R winged-helix domain; InterP | 91.52 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 91.2 | |
| PF07381 | 90 | DUF1495: Winged helix DNA-binding domain (DUF1495) | 91.19 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 91.11 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 91.03 | |
| PRK06474 | 178 | hypothetical protein; Provisional | 90.81 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 90.69 | |
| PRK10870 | 176 | transcriptional repressor MprA; Provisional | 90.52 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 90.44 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 90.42 | |
| smart00345 | 60 | HTH_GNTR helix_turn_helix gluconate operon transcr | 90.39 | |
| PF06163 | 127 | DUF977: Bacterial protein of unknown function (DUF | 90.32 | |
| PF00325 | 32 | Crp: Bacterial regulatory proteins, crp family; In | 90.16 | |
| cd07377 | 66 | WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi | 90.08 | |
| COG3432 | 95 | Predicted transcriptional regulator [Transcription | 90.06 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 89.89 | |
| TIGR00373 | 158 | conserved hypothetical protein TIGR00373. This fam | 89.84 | |
| smart00529 | 96 | HTH_DTXR Helix-turn-helix diphteria tox regulatory | 89.75 | |
| PF07789 | 155 | DUF1627: Protein of unknown function (DUF1627); In | 89.72 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 89.7 | |
| PHA02943 | 165 | hypothetical protein; Provisional | 89.62 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 89.48 | |
| TIGR01610 | 95 | phage_O_Nterm phage replication protein O, N-termi | 88.94 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 88.5 | |
| cd07153 | 116 | Fur_like Ferric uptake regulator(Fur) and related | 88.31 | |
| PRK11169 | 164 | leucine-responsive transcriptional regulator; Prov | 87.9 | |
| PRK11179 | 153 | DNA-binding transcriptional regulator AsnC; Provis | 87.63 | |
| COG1522 | 154 | Lrp Transcriptional regulators [Transcription] | 87.06 | |
| COG1378 | 247 | Predicted transcriptional regulators [Transcriptio | 86.84 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 86.72 | |
| PRK13509 | 251 | transcriptional repressor UlaR; Provisional | 86.38 | |
| PF02002 | 105 | TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024 | 86.01 | |
| COG2512 | 258 | Predicted membrane-associated trancriptional regul | 85.92 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 85.89 | |
| PF08221 | 62 | HTH_9: RNA polymerase III subunit RPC82 helix-turn | 85.57 | |
| PF03444 | 78 | HrcA_DNA-bdg: Winged helix-turn-helix transcriptio | 85.35 | |
| COG1733 | 120 | Predicted transcriptional regulators [Transcriptio | 85.3 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 85.29 | |
| PF10007 | 92 | DUF2250: Uncharacterized protein conserved in arch | 85.26 | |
| PF07109 | 97 | Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl | 85.24 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 84.81 | |
| PRK10906 | 252 | DNA-binding transcriptional repressor GlpR; Provis | 84.7 | |
| TIGR01321 | 94 | TrpR trp operon repressor, proteobacterial. This m | 84.27 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 84.2 | |
| PRK10411 | 240 | DNA-binding transcriptional activator FucR; Provis | 83.44 | |
| TIGR00498 | 199 | lexA SOS regulatory protein LexA. LexA acts as a h | 83.22 | |
| PF04182 | 75 | B-block_TFIIIC: B-block binding subunit of TFIIIC; | 82.95 | |
| PF13404 | 42 | HTH_AsnC-type: AsnC-type helix-turn-helix domain; | 82.78 | |
| PF14394 | 171 | DUF4423: Domain of unknown function (DUF4423) | 82.45 | |
| PF13545 | 76 | HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: | 82.41 | |
| TIGR02698 | 130 | CopY_TcrY copper transport repressor, CopY/TcrY fa | 82.35 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 82.09 | |
| PRK13699 | 227 | putative methylase; Provisional | 81.91 | |
| COG4565 | 224 | CitB Response regulator of citrate/malate metaboli | 81.87 | |
| PRK10434 | 256 | srlR DNA-bindng transcriptional repressor SrlR; Pr | 81.56 | |
| PF13730 | 55 | HTH_36: Helix-turn-helix domain | 81.16 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 81.02 | |
| PRK05638 | 442 | threonine synthase; Validated | 81.0 | |
| PRK04214 | 412 | rbn ribonuclease BN/unknown domain fusion protein; | 80.88 | |
| PRK11886 | 319 | bifunctional biotin--[acetyl-CoA-carboxylase] synt | 80.86 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 80.78 | |
| PF05584 | 72 | Sulfolobus_pRN: Sulfolobus plasmid regulatory prot | 80.73 | |
| PRK09802 | 269 | DNA-binding transcriptional regulator AgaR; Provis | 80.59 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 80.23 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 80.09 |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-44 Score=327.86 Aligned_cols=338 Identities=46% Similarity=0.801 Sum_probs=300.9
Q ss_pred HhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhcc-CCCCCCCcHHHHHHHHhcCcceeecccC
Q 016366 20 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQA-QNVKAPMMLDRMLRLLVSHRVLECSVSG 98 (390)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~-~~~~~~~~l~r~L~~L~~~gll~~~~~~ 98 (390)
++.+..-+++++++++..++++.+|+|||+||+|++.++ +.|+|..+.. .++.++..+.|+||.|++.+++++...+
T Consensus 2 ~e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~ 79 (342)
T KOG3178|consen 2 EENEASLRAMRLANGFALPMVLKAACELGVFDILANAGS--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVG 79 (342)
T ss_pred chhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCCC--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeec
Confidence 345667789999999999999999999999999999643 8888888773 2445888999999999999999875333
Q ss_pred CCcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCC
Q 016366 99 GERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGG 178 (390)
Q Consensus 99 ~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~ 178 (390)
.+ .|++++.++.+....+..++..++...+++..++.|. .|.++++.+.
T Consensus 80 ~~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~------------------------------~l~dai~eg~ 128 (342)
T KOG3178|consen 80 GE-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQ------------------------------FLKDAILEGG 128 (342)
T ss_pred ce-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHH------------------------------HHHHHHHhcc
Confidence 23 8999999998887766667889998888899999998 8999999999
Q ss_pred chhhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEec
Q 016366 179 IPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFD 258 (390)
Q Consensus 179 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D 258 (390)
.++...+|...++|...+......|+++|...+..+.+.+++.+.+++.....+|+|+|.|..+..++..||+++++.+|
T Consensus 129 ~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infd 208 (342)
T KOG3178|consen 129 DAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFD 208 (342)
T ss_pred cCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecC
Confidence 99999999889999999988889999999999998888888888878889999999999999999999999999999999
Q ss_pred chHHHhhCCCC-CCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCC-CcchH
Q 016366 259 LPHVVQDAPSY-AGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP-EVSSA 336 (390)
Q Consensus 259 l~~~~~~a~~~-~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~-~~~~~ 336 (390)
+|.+++.+... +.|+.+.||++++.|.+|+||+.++||||+|++|.++|+||++.|+|||++++.|.+.++.. .....
T Consensus 209 lp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~ 288 (342)
T KOG3178|consen 209 LPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDID 288 (342)
T ss_pred HHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccc
Confidence 99999999988 89999999999999999999999999999999999999999999999999999999888632 22222
Q ss_pred HhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 337 ARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 337 ~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
......+|+.|+.++.+|++|+..|++.++.++||.+.++...+..+++|+.+|
T Consensus 289 s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 289 SSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred cceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 345668899999988789999999999999999999999999999999999887
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=291.62 Aligned_cols=237 Identities=30% Similarity=0.631 Sum_probs=206.5
Q ss_pred CCcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCC
Q 016366 99 GERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGG 178 (390)
Q Consensus 99 ~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~ 178 (390)
++++|++|+.|..|+.+++..++..++.+...+.++..|. +|.+++++|.
T Consensus 2 ~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~L~~~v~~g~ 51 (241)
T PF00891_consen 2 EGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWF------------------------------RLTEAVRTGK 51 (241)
T ss_dssp STEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGG------------------------------GHHHHHHHSS
T ss_pred CCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHH------------------------------HHHhhhccCC
Confidence 5789999999999998887567777777766777777776 9999999999
Q ss_pred chhhhhcCCChhhhcccCchHHHHHHHHHhhccHHHH-HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEe
Q 016366 179 IPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAM-ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNF 257 (390)
Q Consensus 179 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~-~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~ 257 (390)
++|...+|.++|+++.++|+..+.|+.+|...+.... ..+...++ +++..+|||||||+|.++.++++++|+++++++
T Consensus 52 ~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~ 130 (241)
T PF00891_consen 52 PPFEKAFGTPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVF 130 (241)
T ss_dssp -HHHHHHSS-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEE
T ss_pred CHHHHhcCCcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceee
Confidence 9999999988999999999999999999999998777 77778777 899999999999999999999999999999999
Q ss_pred cchHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCC--cEEEEEecccCCCCCcch
Q 016366 258 DLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGN--GKVIVMNSIVPEIPEVSS 335 (390)
Q Consensus 258 Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pg--G~lli~e~~~~~~~~~~~ 335 (390)
|+|.+++.+++.+||+++.||+++++|.+|+|+++++||+|+|+++.++|++++++|+|| |+|+|.|.+.++......
T Consensus 131 Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~ 210 (241)
T PF00891_consen 131 DLPEVIEQAKEADRVEFVPGDFFDPLPVADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPP 210 (241)
T ss_dssp E-HHHHCCHHHTTTEEEEES-TTTCCSSESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHH
T ss_pred ccHhhhhccccccccccccccHHhhhccccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCch
Confidence 999999999988999999999999888899999999999999999999999999999999 999999999988765543
Q ss_pred HHhhhhhhhhhhhhhcCCCcccCHHHHHHHHH
Q 016366 336 AARETSLLDVLLMTRDGGGRERTKKEYTELAI 367 (390)
Q Consensus 336 ~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~ 367 (390)
.......+|+.|++.+ +|++||.+||++||+
T Consensus 211 ~~~~~~~~dl~ml~~~-~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 211 SAEMDALFDLNMLVLT-GGKERTEEEWEALLK 241 (241)
T ss_dssp HHHHHHHHHHHHHHHH-SSS-EEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CCCCcCHHHHHHHhC
Confidence 3323468999999988 699999999999985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=294.44 Aligned_cols=290 Identities=19% Similarity=0.325 Sum_probs=210.3
Q ss_pred HHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccccCC
Q 016366 37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNK 116 (390)
Q Consensus 37 ~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~~ 116 (390)
..++|++|+++||||.|.+ ||.|++|||+++|+ +++.++|+|++|+++|++++ ++++|++|+.+..++.+.
T Consensus 3 ~~~~l~aa~~Lglfd~L~~-gp~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~----~~~~y~~t~~~~~~l~~~ 73 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAE-GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINL----EDGKWSLTEFADYMFSPT 73 (306)
T ss_pred hHHHHHHHHHcCcHHHHhc-CCCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEe----cCCcEecchhHHhhccCC
Confidence 4679999999999999987 69999999999999 99999999999999999995 568999999998777665
Q ss_pred CCCC---hHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCCchhhhhcCCChhhhc
Q 016366 117 DGAS---LGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYA 193 (390)
Q Consensus 117 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~ 193 (390)
++.+ +..+..+.. ......| .+|.+++++ ++++...++ +.
T Consensus 74 ~~~~~~~~~~~~~~~~-~~~~~~~------------------------------~~l~~~~r~-~~~~~~~~~-----~~ 116 (306)
T TIGR02716 74 PKEPNLHQTPVAKAMA-FLADDFY------------------------------MGLSQAVRG-QKNFKGQVP-----YP 116 (306)
T ss_pred ccchhhhcCchHHHHH-HHHHHHH------------------------------HhHHHHhcC-CcccccccC-----CC
Confidence 5321 111211110 0011223 388888874 344432222 11
Q ss_pred ccCchHHHHHHHHHh-hccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC---
Q 016366 194 SGNPRFNETYHEAMF-NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY--- 269 (390)
Q Consensus 194 ~~~~~~~~~~~~~m~-~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~--- 269 (390)
...+.. ..|...|. .......+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++++
T Consensus 117 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~ 194 (306)
T TIGR02716 117 PVTRED-NLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAE 194 (306)
T ss_pred CCCHHH-HHhHHHHHHhcchhHHHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHh
Confidence 112222 23333343 333444556667666 778899999999999999999999999999999999998877642
Q ss_pred ----CCceEEECCCCC-CCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhh-h
Q 016366 270 ----AGVEHVGGNMFE-SVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL-L 343 (390)
Q Consensus 270 ----~rv~~~~gd~~~-~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~-~ 343 (390)
+||+++.+|+++ ++|.+|+|++++++|+|+++.+.++|++++++|+|||+++|.|.+.++...+ ........ .
T Consensus 195 ~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~-~~~~~~~~~~ 273 (306)
T TIGR02716 195 KGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENP-NFDYLSHYIL 273 (306)
T ss_pred CCccceEEEEecCccCCCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc-hhhHHHHHHH
Confidence 689999999997 6776799999999999999988999999999999999999999887654322 11111111 1
Q ss_pred hhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 344 DVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 344 d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
...|... -...++.++|.++|+++||+.+++.
T Consensus 274 ~~~~~~~--~~~~~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 274 GAGMPFS--VLGFKEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred Hcccccc--cccCCCHHHHHHHHHHcCCCeeEec
Confidence 1111111 1123458999999999999988753
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-18 Score=153.46 Aligned_cols=160 Identities=18% Similarity=0.299 Sum_probs=123.7
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~- 286 (390)
+.+.+... ..++.+|||||||||..+..+++..+..+++++|+ +.|++.+++. .+|+|+.+|+++ |+|++
T Consensus 41 ~~~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~s 119 (238)
T COG2226 41 RALISLLG-IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNS 119 (238)
T ss_pred HHHHHhhC-CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCc
Confidence 34444443 34678999999999999999999999999999999 8899999874 239999999999 99976
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhh-hhhhc----C--------
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL-LMTRD----G-------- 352 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~----~-------- 352 (390)
|+|.+++.|++++|.+ ++|++++|+|||||++++.|...+..+... .....+... .+... .
T Consensus 120 FD~vt~~fglrnv~d~~--~aL~E~~RVlKpgG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~y 194 (238)
T COG2226 120 FDAVTISFGLRNVTDID--KALKEMYRVLKPGGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAEAYEY 194 (238)
T ss_pred cCEEEeeehhhcCCCHH--HHHHHHHHhhcCCeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChHHHHH
Confidence 9999999999999866 899999999999999999999887653221 111111111 11111 0
Q ss_pred ----CCcccCHHHHHHHHHHCCCCeeEEEecCC
Q 016366 353 ----GGRERTKKEYTELAIAAGFKGINFASCVC 381 (390)
Q Consensus 353 ----~g~~~t~~e~~~ll~~aGf~~~~~~~~~~ 381 (390)
.-..++.+++.++++++||+.+.......
T Consensus 195 L~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~ 227 (238)
T COG2226 195 LAESIRRFPDQEELKQMIEKAGFEEVRYENLTF 227 (238)
T ss_pred HHHHHHhCCCHHHHHHHHHhcCceEEeeEeeee
Confidence 11346899999999999999888665553
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-17 Score=151.41 Aligned_cols=159 Identities=19% Similarity=0.249 Sum_probs=118.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC---------CCceEEECCCCC-CCCCC--cEEE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFE-SVPEG--DAIL 290 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~---------~rv~~~~gd~~~-~~p~~--D~i~ 290 (390)
..+..+|||||||+|.++..+++.+ |+.+++++|+ +.|++.|+++ ++++++++|+.+ |++.+ |+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 5567899999999999999999875 6778999998 8899887642 479999999988 77764 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhh-hhhhh--h-hhcCC-----------Cc
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL-LDVLL--M-TRDGG-----------GR 355 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~-~d~~~--~-~~~~~-----------g~ 355 (390)
+.+++|++++.. ++|++++++|||||++++.|...++.+... ....+ +...+ . ..... ..
T Consensus 151 ~~~~l~~~~d~~--~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 151 MGYGLRNVVDRL--KAMQEMYRVLKPGSRVSILDFNKSTQPFTT---SMQEWMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EecccccCCCHH--HHHHHHHHHcCcCcEEEEEECCCCCcHHHH---HHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 999999998765 899999999999999999998765532111 11000 00000 0 00000 23
Q ss_pred ccCHHHHHHHHHHCCCCeeEEEecCCcee-EEEE
Q 016366 356 ERTKKEYTELAIAAGFKGINFASCVCNLY-IMEF 388 (390)
Q Consensus 356 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~-vi~~ 388 (390)
.++.+++.++++++||+.++......+.. +..+
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 259 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEISGGLMGNLVA 259 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEE
Confidence 56999999999999999999888764443 4433
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-19 Score=160.57 Aligned_cols=167 Identities=22% Similarity=0.368 Sum_probs=84.9
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC--
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG-- 286 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~-- 286 (390)
+++... ..++.+|||+|||+|..+..++++. |+.+++++|+ +.|++.+++. .+|+++++|+++ |++++
T Consensus 39 ~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sf 117 (233)
T PF01209_consen 39 LIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSF 117 (233)
T ss_dssp HHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-E
T ss_pred HHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCce
Confidence 344343 5667899999999999999999875 6789999998 8999998852 589999999998 88875
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhh-hhhhhhh--hh--hcCC--------
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET-SLLDVLL--MT--RDGG-------- 353 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~-~~~d~~~--~~--~~~~-------- 353 (390)
|+|++++.+|+++|.. +.|++++|+|||||+++|.|...+..+. ..... ..+...+ .. ...+
T Consensus 118 D~v~~~fglrn~~d~~--~~l~E~~RVLkPGG~l~ile~~~p~~~~---~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~ 192 (233)
T PF01209_consen 118 DAVTCSFGLRNFPDRE--RALREMYRVLKPGGRLVILEFSKPRNPL---LRALYKFYFKYILPLIGRLLSGDREAYRYLP 192 (233)
T ss_dssp EEEEEES-GGG-SSHH--HHHHHHHHHEEEEEEEEEEEEEB-SSHH---HHHHHHH------------------------
T ss_pred eEEEHHhhHHhhCCHH--HHHHHHHHHcCCCeEEEEeeccCCCCch---hhceeeeeecccccccccccccccccccccc
Confidence 9999999999999866 7899999999999999999998776421 11100 1111000 00 0000
Q ss_pred ---CcccCHHHHHHHHHHCCCCeeEEEecCCc-eeEEEEeC
Q 016366 354 ---GRERTKKEYTELAIAAGFKGINFASCVCN-LYIMEFFK 390 (390)
Q Consensus 354 ---g~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~k 390 (390)
...++.+++.++++++||+.++..+...+ ..+..++|
T Consensus 193 ~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 193 ESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp -----------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccCC
Confidence 13457899999999999999988777643 34444443
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-18 Score=157.38 Aligned_cols=159 Identities=13% Similarity=0.198 Sum_probs=120.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhC--CCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCCcEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~D~i~~~~v 294 (390)
.+..+|||||||+|.++..+++++ |+.+++++|+ +.|++.++++ .+++++++|+.+ +++..|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 456799999999999999999874 7899999999 8899888652 368999999988 6666699999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhh-----------------hhhcCCCccc
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLL-----------------MTRDGGGRER 357 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-----------------~~~~~~g~~~ 357 (390)
+|++++++...+|++++++|+|||.+++.|.+.++++..... ...+.+ ..........
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL-----LIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 999998888899999999999999999999876554321100 011100 0000022457
Q ss_pred CHHHHHHHHHHCCCCeeEEEecCCceeEEEEe
Q 016366 358 TKKEYTELAIAAGFKGINFASCVCNLYIMEFF 389 (390)
Q Consensus 358 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 389 (390)
|.+++.++++++||+.+++......+.+..++
T Consensus 207 s~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred CHHHHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence 99999999999999988766555555544444
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.3e-17 Score=146.51 Aligned_cols=168 Identities=20% Similarity=0.251 Sum_probs=124.3
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCC------CCCceEEECCCCC-CCCCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-SVPEG 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~~p~~ 286 (390)
..++..+. ..+..+|||+|||+|..+..+++.. |+.+++++|+ +.+++.+++ .++++++.+|+.+ +++.+
T Consensus 35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 34555565 6677899999999999999999885 6789999998 788877664 2579999999987 66654
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhh-hhhh----------------hh
Q 016366 287 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETS-LLDV----------------LL 347 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~-~~d~----------------~~ 347 (390)
|+|++..++|++++.. ++|+++.+.|+|||++++.+...++.+. ...... .+.. ..
T Consensus 114 ~fD~V~~~~~l~~~~~~~--~~l~~~~~~Lk~gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 188 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDYM--QVLREMYRVVKPGGKVVCLETSQPTIPG---FKQLYFFYFKYIMPLFGKLFAKSYKEYSW 188 (231)
T ss_pred CccEEEEecccccCCCHH--HHHHHHHHHcCcCeEEEEEECCCCCChH---HHHHHHHHHcChhHHhhHHhcCCHHHHHH
Confidence 9999999999998765 8999999999999999998876544211 100000 0000 00
Q ss_pred hhhcCCCcccCHHHHHHHHHHCCCCeeEEEecC-CceeEEEEeC
Q 016366 348 MTRDGGGRERTKKEYTELAIAAGFKGINFASCV-CNLYIMEFFK 390 (390)
Q Consensus 348 ~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 390 (390)
+... ....++.++++++|+++||+++++.... +..+++.++|
T Consensus 189 ~~~~-~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 189 LQES-TRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHH-HHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0000 1234688999999999999999998887 6666777776
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=153.45 Aligned_cols=153 Identities=12% Similarity=0.174 Sum_probs=114.1
Q ss_pred CCcceEEEEcCCccHHHHHHHh--hCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCCcEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITS--KYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~--~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~D~i~~~~v 294 (390)
.+..+|||||||+|..+..+++ .+|+.+++++|+ +.|++.++++ .+++++++|+.+ +.+..|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 4668999999999999999888 468999999998 8899988753 379999999987 6666699999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhh-----------h-h-hhcCCCcccCHHH
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL-----------L-M-TRDGGGRERTKKE 361 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-----------~-~-~~~~~g~~~t~~e 361 (390)
+|++++++...++++++++|+|||.+++.|.+..++...... ....+.+.. - . .....-...|.++
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 999998888899999999999999999999776554322110 000010000 0 0 0000122348999
Q ss_pred HHHHHHHCCCCeeEEEec
Q 016366 362 YTELAIAAGFKGINFASC 379 (390)
Q Consensus 362 ~~~ll~~aGf~~~~~~~~ 379 (390)
..++|+++||+.+..+..
T Consensus 214 ~~~~L~~aGF~~v~~~~~ 231 (247)
T PRK15451 214 HKARLHKAGFEHSELWFQ 231 (247)
T ss_pred HHHHHHHcCchhHHHHHH
Confidence 999999999998765443
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.3e-17 Score=148.69 Aligned_cols=155 Identities=18% Similarity=0.307 Sum_probs=119.6
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCC-CCCCC--c
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEG--D 287 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~-~~p~~--D 287 (390)
..+++.+. +.+..+|||||||+|..+..+++.+ ..+++++|+ +.+++.+++ .++++++++|+.+ ++|.+ |
T Consensus 42 ~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD 119 (263)
T PTZ00098 42 TKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFD 119 (263)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence 46667666 6788899999999999999998775 578999998 778877765 2579999999987 77754 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHH
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 367 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~ 367 (390)
+|++..+++|++.++...+|++++++|+|||++++.+........ +...... .... ......+.+++.++|+
T Consensus 120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~--~~~~~~~-----~~~~-~~~~~~~~~~~~~~l~ 191 (263)
T PTZ00098 120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN--WDEEFKA-----YIKK-RKYTLIPIQEYGDLIK 191 (263)
T ss_pred EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC--cHHHHHH-----HHHh-cCCCCCCHHHHHHHHH
Confidence 999999998888666779999999999999999999987654211 1111111 1110 1223468999999999
Q ss_pred HCCCCeeEEEecC
Q 016366 368 AAGFKGINFASCV 380 (390)
Q Consensus 368 ~aGf~~~~~~~~~ 380 (390)
++||++++...+.
T Consensus 192 ~aGF~~v~~~d~~ 204 (263)
T PTZ00098 192 SCNFQNVVAKDIS 204 (263)
T ss_pred HCCCCeeeEEeCc
Confidence 9999999988765
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=147.10 Aligned_cols=157 Identities=19% Similarity=0.236 Sum_probs=112.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCCC-C-cEEEec
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPE-G-DAILMK 292 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p~-~-D~i~~~ 292 (390)
..+++.++ .....+|||||||+|.++..+++++|+.+++++|+ +.+++.+++. +++++++|+.+..+. . |+|+++
T Consensus 19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-GVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-CCcEEEcChhhCCCCCCceEEEEe
Confidence 46677776 56778999999999999999999999999999999 8899988763 699999999763333 3 999999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhh---hhhhhh-hhhhcCCCcccCHHHHHHHHHH
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET---SLLDVL-LMTRDGGGRERTKKEYTELAIA 368 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~---~~~d~~-~~~~~~~g~~~t~~e~~~ll~~ 368 (390)
.++|++++.. +++++++++|+|||++++........+......... .+.... ...........+.+++.++|++
T Consensus 97 ~~l~~~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (255)
T PRK14103 97 AALQWVPEHA--DLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTD 174 (255)
T ss_pred hhhhhCCCHH--HHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHh
Confidence 9999998765 899999999999999998643211111000000000 010000 0000012335689999999999
Q ss_pred CCCCeeEE
Q 016366 369 AGFKGINF 376 (390)
Q Consensus 369 aGf~~~~~ 376 (390)
+||++...
T Consensus 175 aGf~v~~~ 182 (255)
T PRK14103 175 AGCKVDAW 182 (255)
T ss_pred CCCeEEEE
Confidence 99985443
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-16 Score=149.59 Aligned_cols=151 Identities=19% Similarity=0.261 Sum_probs=111.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCC--cEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG--DAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~--D~i~~~~v 294 (390)
.++.+|||||||+|.++..+++++ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 566899999999999999999987 678999998 7777766542 579999999988 77754 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCC-cchH-HhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPE-VSSA-ARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~-~~~~-~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
+||+++.. +++++++++|||||+++|.+........ .... ......++....... .....+.++|.++++++||.
T Consensus 196 ~~h~~d~~--~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 196 GEHMPDKR--KFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hhccCCHH--HHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHCCCC
Confidence 99998865 8999999999999999998876433211 1000 000111111111100 11235899999999999999
Q ss_pred eeEEEecC
Q 016366 373 GINFASCV 380 (390)
Q Consensus 373 ~~~~~~~~ 380 (390)
.+++....
T Consensus 273 ~v~~~d~s 280 (340)
T PLN02244 273 DIKTEDWS 280 (340)
T ss_pred eeEeeeCc
Confidence 99887664
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-16 Score=136.90 Aligned_cols=168 Identities=18% Similarity=0.238 Sum_probs=123.7
Q ss_pred HHHHHHHh-hccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC------CeEEEecc-hHHHhhCCCC---
Q 016366 201 ETYHEAMF-NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ------IKAVNFDL-PHVVQDAPSY--- 269 (390)
Q Consensus 201 ~~~~~~m~-~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~------~~~~~~Dl-~~~~~~a~~~--- 269 (390)
...+++|+ ...+.+-.-....+. .....++||++||||..+..+.+.-+. .+++++|+ |+|++.++++
T Consensus 74 D~mND~mSlGiHRlWKd~~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~ 152 (296)
T KOG1540|consen 74 DIMNDAMSLGIHRLWKDMFVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK 152 (296)
T ss_pred HHHHHHhhcchhHHHHHHhhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh
Confidence 45566666 334444333444444 455689999999999999999998776 78999999 9998877653
Q ss_pred ------CCceEEECCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhh
Q 016366 270 ------AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET 340 (390)
Q Consensus 270 ------~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~ 340 (390)
.+++++++|+++ |+|.+ |.+++.+-+.++++.+ +.|++++|+|||||++.+.|+-.-+++. ..++.
T Consensus 153 ~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKpGGrf~cLeFskv~~~~---l~~fy 227 (296)
T KOG1540|consen 153 RPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKPGGRFSCLEFSKVENEP---LKWFY 227 (296)
T ss_pred cCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCCCcEEEEEEccccccHH---HHHHH
Confidence 459999999999 99976 9999999999999977 8999999999999999999986544211 11111
Q ss_pred --hhhhh---------------hhhhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 341 --SLLDV---------------LLMTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 341 --~~~d~---------------~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
.+++. ..++.. -.+.++.+++..+.+++||+.+.
T Consensus 228 ~~ysf~VlpvlG~~iagd~~sYqYLveS-I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 228 DQYSFDVLPVLGEIIAGDRKSYQYLVES-IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhhhhchhhHhhhhhHhhhhhHHhh-hhcCCCHHHHHHHHHHcCCcccc
Confidence 11111 001110 12456889999999999999887
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=143.35 Aligned_cols=140 Identities=24% Similarity=0.379 Sum_probs=111.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCC-CCCCC--cEEEeccccccC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAILMKWILHCW 298 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~ 298 (390)
.+..+|||||||+|.++..+++..+..+++++|. +.+++.+++. .+++++.+|+.+ +++.+ |+|++..++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 3567999999999999999999888889999998 7888887763 579999999987 66653 999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEe
Q 016366 299 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 378 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 378 (390)
++.+ ++|++++++|+|||++++.+...++. +... ...+..+ ..++.+++.++++++||+.+++..
T Consensus 192 ~d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~----~~~r--~~~~~~~-------~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 192 PDPQ--RGIKEAYRVLKIGGKACLIGPVHPTF----WLSR--FFADVWM-------LFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CCHH--HHHHHHHHhcCCCcEEEEEEecCcch----hHHH--Hhhhhhc-------cCCCHHHHHHHHHHCCCeEEEEEE
Confidence 9876 78999999999999999887654331 1111 0111111 135799999999999999999887
Q ss_pred cC
Q 016366 379 CV 380 (390)
Q Consensus 379 ~~ 380 (390)
+.
T Consensus 257 i~ 258 (340)
T PLN02490 257 IG 258 (340)
T ss_pred cC
Confidence 65
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-15 Score=135.46 Aligned_cols=169 Identities=14% Similarity=0.241 Sum_probs=122.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE 285 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~ 285 (390)
..++..+. ..+..+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.
T Consensus 41 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 41 RKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence 34455554 44568999999999999999999987 789999998 6777766652 468999999987 5443
Q ss_pred C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhh----hhcCC------
Q 016366 286 G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM----TRDGG------ 353 (390)
Q Consensus 286 ~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~------ 353 (390)
+ |+|++.+++|++++.. .+|+++.+.|+|||++++.+...+.... ...........++ ....+
T Consensus 120 ~~~D~I~~~~~l~~~~~~~--~~l~~~~~~L~~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPDID--KALREMYRVLKPGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEAYS 194 (239)
T ss_pred CCccEEEEecccccCCCHH--HHHHHHHHhccCCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHHHH
Confidence 3 9999999999998755 8899999999999999999887654321 0000000000000 00001
Q ss_pred ------CcccCHHHHHHHHHHCCCCeeEEEecC-CceeEEEEeC
Q 016366 354 ------GRERTKKEYTELAIAAGFKGINFASCV-CNLYIMEFFK 390 (390)
Q Consensus 354 ------g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 390 (390)
...++.++|.++|+++||+.+++.... +...++.++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 195 YLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 124578999999999999999998876 5667777765
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=139.10 Aligned_cols=157 Identities=20% Similarity=0.208 Sum_probs=128.9
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~ 286 (390)
...+++.+. +.++.+|||||||.|.+++.++++| +++++++++ ++..+.++++ .+|++.-.|..+..+..
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 356777777 8999999999999999999999999 899999998 6666665541 47999999887643336
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
|-|++...++|+..+.-..+++++++.|+|||++++.....++.+.. ...++..-..+|+|..++.+++.+..
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i~~~~ 211 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEILELA 211 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHHHHHH
Confidence 99999999999999888999999999999999999999887664321 12233334446899999999999999
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
+++||.+.......
T Consensus 212 ~~~~~~v~~~~~~~ 225 (283)
T COG2230 212 SEAGFVVLDVESLR 225 (283)
T ss_pred HhcCcEEehHhhhc
Confidence 99999998876654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-15 Score=151.60 Aligned_cols=152 Identities=16% Similarity=0.281 Sum_probs=117.6
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC--
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-- 286 (390)
..+++.+. .++..+|||||||+|..+..+++.+ +.+++++|+ +.+++.|+++ .++++..+|+.+ ++|..
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 44666665 5667899999999999999998876 678999998 7788877542 479999999988 66654
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
|+|++..+++|+++.. ++|++++++|+|||++++.+........... .... ... .+...++.+++.+++
T Consensus 334 D~I~s~~~l~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~------~~~~--~~~-~g~~~~~~~~~~~~l 402 (475)
T PLN02336 334 DVIYSRDTILHIQDKP--ALFRSFFKWLKPGGKVLISDYCRSPGTPSPE------FAEY--IKQ-RGYDLHDVQAYGQML 402 (475)
T ss_pred EEEEECCcccccCCHH--HHHHHHHHHcCCCeEEEEEEeccCCCCCcHH------HHHH--HHh-cCCCCCCHHHHHHHH
Confidence 9999999999998865 8999999999999999999887644221111 1111 111 144577899999999
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
+++||+++++....
T Consensus 403 ~~aGF~~i~~~d~~ 416 (475)
T PLN02336 403 KDAGFDDVIAEDRT 416 (475)
T ss_pred HHCCCeeeeeecch
Confidence 99999998776543
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=131.56 Aligned_cols=168 Identities=15% Similarity=0.197 Sum_probs=120.5
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCC----CCceEEECCCCC-CCCCC--c
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--D 287 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~-~~p~~--D 287 (390)
.+++.+. ..+..+|||+|||+|.++..+++.+|. .+++++|+ +.+++.+++. ++++++.+|+.+ +.+.+ |
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 3444444 446789999999999999999999987 78999998 6777766542 579999999987 55543 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhc-------CC-------
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD-------GG------- 353 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~------- 353 (390)
+|++.+++|+.++.. .+|+++++.|+|||++++.+...+.... ...........++... .+
T Consensus 109 ~i~~~~~~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (223)
T TIGR01934 109 AVTIAFGLRNVTDIQ--KALREMYRVLKPGGRLVILEFSKPANAL---LKKFYKFYLKNVLPSIGGLISKNAEAYTYLPE 183 (223)
T ss_pred EEEEeeeeCCcccHH--HHHHHHHHHcCCCcEEEEEEecCCCchh---hHHHHHHHHHHhhhhhhhhhcCCchhhHHHHH
Confidence 999999999988755 8999999999999999998876543210 1000000000010000 00
Q ss_pred --CcccCHHHHHHHHHHCCCCeeEEEecCCc-eeEEEEeC
Q 016366 354 --GRERTKKEYTELAIAAGFKGINFASCVCN-LYIMEFFK 390 (390)
Q Consensus 354 --g~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~k 390 (390)
....+.++|.++|+++||+.+++.++.+. ..+++++|
T Consensus 184 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 184 SIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 12347899999999999999999998866 44666554
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.5e-15 Score=140.01 Aligned_cols=154 Identities=12% Similarity=0.088 Sum_probs=109.5
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCC-------CCCCceEEECCCCC-CCCCC-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP-------SYAGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~-------~~~rv~~~~gd~~~-~~p~~- 286 (390)
.++..++ ...+.+|||||||+|.++..+++..+. +++++|. +.++..++ ...+|+++.+|+.+ +.+..
T Consensus 113 ~l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 113 RVLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 3444554 234589999999999999999998765 5899997 44443321 13579999999987 65444
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
|+|++..++||..+.. .+|+++++.|+|||.+++.+.+.+........ ..... ..|.. .-..++.+++.+++
T Consensus 191 D~V~s~~vl~H~~dp~--~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~-p~~~y--~~~~~---~~~lps~~~l~~~L 262 (322)
T PRK15068 191 DTVFSMGVLYHRRSPL--DHLKQLKDQLVPGGELVLETLVIDGDENTVLV-PGDRY--AKMRN---VYFIPSVPALKNWL 262 (322)
T ss_pred CEEEECChhhccCCHH--HHHHHHHHhcCCCcEEEEEEEEecCCCccccC-chhHH--hcCcc---ceeCCCHHHHHHHH
Confidence 9999999999988765 89999999999999999877665543221100 00000 00100 11246899999999
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
+++||+.+++....
T Consensus 263 ~~aGF~~i~~~~~~ 276 (322)
T PRK15068 263 ERAGFKDVRIVDVS 276 (322)
T ss_pred HHcCCceEEEEeCC
Confidence 99999999887653
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.4e-15 Score=138.24 Aligned_cols=154 Identities=11% Similarity=0.034 Sum_probs=109.0
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCC-------CCCCceEEECCCCC-CCCCC-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP-------SYAGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~-------~~~rv~~~~gd~~~-~~p~~- 286 (390)
.++..+. ...+.+|||||||+|.++..++...+. .++++|. +.++..++ ...++.+..+++.+ +....
T Consensus 112 ~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 112 RVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 4455554 345689999999999999999988764 6899997 55554321 23578888888876 43334
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
|+|++..++||++++. .+|++++++|+|||.|++.+...+......... ......|.. .-..++.+++.++|
T Consensus 190 D~V~s~gvL~H~~dp~--~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p---~~ry~k~~n---v~flpS~~~L~~~L 261 (314)
T TIGR00452 190 DTVFSMGVLYHRKSPL--EHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP---KDRYAKMKN---VYFIPSVSALKNWL 261 (314)
T ss_pred CEEEEcchhhccCCHH--HHHHHHHHhcCCCCEEEEEEEEecCccccccCc---hHHHHhccc---cccCCCHHHHHHHH
Confidence 9999999999998875 899999999999999999887665432110000 000001110 11246899999999
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
+++||+.+++....
T Consensus 262 ~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 262 EKVGFENFRILDVL 275 (314)
T ss_pred HHCCCeEEEEEecc
Confidence 99999999887553
|
Known examples to date are restricted to the proteobacteria. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-15 Score=138.33 Aligned_cols=161 Identities=15% Similarity=0.136 Sum_probs=111.5
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPEG 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~p~~ 286 (390)
...+++.+. ++++.+|||||||.|.++..+++++ +++++++.+ +...+.+++ .+++++...|+.+.-+..
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 346677776 8889999999999999999999998 789999998 555555442 257999999987522244
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
|.|++...+.|+.......+++++.+.|+|||++++...+..+.+.. .......++.....+|+|..++.+++...+
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~---~~~~~~~~~i~kyiFPgg~lps~~~~~~~~ 205 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYH---AERRSSSDFIRKYIFPGGYLPSLSEILRAA 205 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHH---HCTTCCCHHHHHHTSTTS---BHHHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccch---hhcCCCceEEEEeeCCCCCCCCHHHHHHHH
Confidence 99999999999998888899999999999999999988776553110 000001123333345799999999999999
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
+++||++..+...+
T Consensus 206 ~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 206 EDAGLEVEDVENLG 219 (273)
T ss_dssp HHTT-EEEEEEE-H
T ss_pred hcCCEEEEEEEEcC
Confidence 99999999887664
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-15 Score=127.04 Aligned_cols=136 Identities=19% Similarity=0.286 Sum_probs=97.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCC--cEEEeccccccCCh
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDD 300 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d 300 (390)
.....+|||||||+|.++..+.+... +++++|+ +.+++. ..+.....+... +.+.. |+|++.++|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 45678999999999999999977644 8889998 777776 223333333223 23333 99999999999997
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhh-cCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR-DGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
.. .+|+++++.|+|||++++.++..... .... .....+... ......++.++|+++++++||++++
T Consensus 94 ~~--~~l~~l~~~LkpgG~l~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 PE--EFLKELSRLLKPGGYLVISDPNRDDP----SPRS---FLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HH--HHHHHHHHCEEEEEEEEEEEEBTTSH----HHHH---HHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HH--HHHHHHHHhcCCCCEEEEEEcCCcch----hhhH---HHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 55 99999999999999999999875431 0111 111111110 0244678999999999999999875
|
... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-15 Score=143.66 Aligned_cols=146 Identities=14% Similarity=0.038 Sum_probs=105.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCC--cEEEecccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG--DAILMKWIL 295 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~--D~i~~~~vl 295 (390)
...+|||||||+|.++..+++. +.+++++|. +.+++.++++ .+|+++++|+.+ +.+.+ |+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4569999999999999988863 578999998 7888887642 378999999876 54443 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhc---CCCcccCHHHHHHHHHHCCCC
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD---GGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~g~~~t~~e~~~ll~~aGf~ 372 (390)
||+++.. .+|++++++|+|||.+++.+...... ...........+..+... ...+.++.+++.++|+++||+
T Consensus 209 eHv~d~~--~~L~~l~r~LkPGG~liist~nr~~~---~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~ 283 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIPNGATVLSTINRTMR---AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVD 283 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCCCcEEEEEECCcCHH---HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCe
Confidence 9999876 89999999999999999887542210 000000000001111100 012467999999999999999
Q ss_pred eeEEEec
Q 016366 373 GINFASC 379 (390)
Q Consensus 373 ~~~~~~~ 379 (390)
++++..+
T Consensus 284 i~~~~G~ 290 (322)
T PLN02396 284 VKEMAGF 290 (322)
T ss_pred EEEEeee
Confidence 9988544
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-15 Score=128.19 Aligned_cols=180 Identities=16% Similarity=0.203 Sum_probs=130.5
Q ss_pred HHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCceEEECCCC
Q 016366 203 YHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMF 280 (390)
Q Consensus 203 ~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~ 280 (390)
|.+.-...++. +.+++..++ .....+|+|+|||+|..+..+++++|+..++++|- ++|++.|+++ ++++|..+|+.
T Consensus 8 Yl~F~~eRtRP-a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~ 85 (257)
T COG4106 8 YLQFEDERTRP-ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLR 85 (257)
T ss_pred HHHHHHhccCc-HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHh
Confidence 33333333433 357888888 88899999999999999999999999999999998 9999999864 89999999998
Q ss_pred CCCCC--CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhh---hhhhhhc---C
Q 016366 281 ESVPE--GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLD---VLLMTRD---G 352 (390)
Q Consensus 281 ~~~p~--~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d---~~~~~~~---~ 352 (390)
+..|+ .|+++.+-+||+++|.- ++|.++...|.|||.|.+. +|++........+....+ +-..... .
T Consensus 86 ~w~p~~~~dllfaNAvlqWlpdH~--~ll~rL~~~L~Pgg~LAVQ---mPdN~depsH~~mr~~A~~~p~~~~l~~~~~~ 160 (257)
T COG4106 86 TWKPEQPTDLLFANAVLQWLPDHP--ELLPRLVSQLAPGGVLAVQ---MPDNLDEPSHRLMRETADEAPFAQELGGRGLT 160 (257)
T ss_pred hcCCCCccchhhhhhhhhhccccH--HHHHHHHHhhCCCceEEEE---CCCccCchhHHHHHHHHhcCchhhhhCccccc
Confidence 85554 39999999999999976 8999999999999998873 333322211100000000 1010000 1
Q ss_pred CCcccCHHHHHHHHHHCCCCeeEEEe------cCCceeEEEEeC
Q 016366 353 GGRERTKKEYTELAIAAGFKGINFAS------CVCNLYIMEFFK 390 (390)
Q Consensus 353 ~g~~~t~~e~~~ll~~aGf~~~~~~~------~~~~~~vi~~~k 390 (390)
.....+.+.|-++|...+-++ .+++ +++...|++|+|
T Consensus 161 r~~v~s~a~Yy~lLa~~~~rv-DiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 161 RAPLPSPAAYYELLAPLACRV-DIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred cCCCCCHHHHHHHhCccccee-eeeeeeccccCCCccchhhhee
Confidence 334568999999998887554 4433 347778888876
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-14 Score=132.68 Aligned_cols=156 Identities=16% Similarity=0.214 Sum_probs=110.0
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCceEEECCCCCCCC-CC-cEEE
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVP-EG-DAIL 290 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~~~p-~~-D~i~ 290 (390)
...++..++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+..+ .. |+|+
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 346677766 66778999999999999999999999999999998 8899988764 679999999976333 33 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhh--hhhhhhhhc-CCCcccCHHHHHHHHH
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL--LDVLLMTRD-GGGRERTKKEYTELAI 367 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~--~d~~~~~~~-~~g~~~t~~e~~~ll~ 367 (390)
++.++|+.++.. ++|++++++|+|||++++..+.....+........... ....+.... ......+.+++.+++.
T Consensus 99 ~~~~l~~~~d~~--~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (258)
T PRK01683 99 ANASLQWLPDHL--ELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALA 176 (258)
T ss_pred EccChhhCCCHH--HHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHH
Confidence 999999998765 89999999999999988853211110100000000000 000000000 0123467889999999
Q ss_pred HCCCCe
Q 016366 368 AAGFKG 373 (390)
Q Consensus 368 ~aGf~~ 373 (390)
++|+.+
T Consensus 177 ~~g~~v 182 (258)
T PRK01683 177 PAACRV 182 (258)
T ss_pred hCCCce
Confidence 999875
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.6e-15 Score=133.81 Aligned_cols=136 Identities=14% Similarity=0.298 Sum_probs=107.4
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCC-CCCCC-cEEEeccccccC
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE-SVPEG-DAILMKWILHCW 298 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~ 298 (390)
.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+.. |+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999998 777776664 2578999999976 55554 999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEe
Q 016366 299 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 378 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 378 (390)
++.. .+|++++++|+|||++++.+...+...... . + .. .....+.++|.++++++||++++...
T Consensus 81 ~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~-------~-----~~-~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KDKM--DLFSNISRHLKDGGHLVLADFIANLLSAIE-H-------E-----ET-TSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CCHH--HHHHHHHHHcCCCCEEEEEEcccccCcccc-c-------c-----cc-ccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 8754 899999999999999999987543211000 0 0 00 12246899999999999999998877
Q ss_pred cC
Q 016366 379 CV 380 (390)
Q Consensus 379 ~~ 380 (390)
+.
T Consensus 145 ~~ 146 (224)
T smart00828 145 AS 146 (224)
T ss_pred Cc
Confidence 65
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=134.70 Aligned_cols=145 Identities=19% Similarity=0.324 Sum_probs=110.8
Q ss_pred cCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC--cEEEecc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~--D~i~~~~ 293 (390)
+....+|||||||+|..+..+++. .++.+++++|+ +.+++.++++ ++++++.+|+.+ +++.+ |+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 557789999999999988877775 46678999998 8888888752 589999999987 66653 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCe
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKG 373 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 373 (390)
++|++++.. ++|++++++|+|||++++.+....... +. . ...+..++... .+...+.++|.++|+++||..
T Consensus 155 v~~~~~d~~--~~l~~~~r~LkpGG~l~i~~~~~~~~~-~~---~--~~~~~~~~~~~-~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPDKE--RVFKEAFRVLKPGGRFAISDVVLRGEL-PE---E--IRNDAELYAGC-VAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCCHH--HHHHHHHHHcCCCcEEEEEEeeccCCC-CH---H--HHHhHHHHhcc-ccCCCCHHHHHHHHHHCCCCc
Confidence 999988755 899999999999999999988754321 11 1 11122222211 344568999999999999999
Q ss_pred eEEEe
Q 016366 374 INFAS 378 (390)
Q Consensus 374 ~~~~~ 378 (390)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87744
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-15 Score=120.28 Aligned_cols=97 Identities=22% Similarity=0.385 Sum_probs=82.3
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCC-CC-CCCCC-cEEEecc-cc
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNM-FE-SVPEG-DAILMKW-IL 295 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~-~~-~~p~~-D~i~~~~-vl 295 (390)
+.+|||||||+|.++..+++.+|+.+++++|. |.+++.+++ .++|+++++|+ .. +.+.. |+|++.. .+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 57899999999999999999999999999998 888887765 27899999999 43 34444 9999999 66
Q ss_pred ccCCh-hHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 296 HCWDD-DHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 296 h~~~d-~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
|++.+ ++..++|+++++.|+|||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 65443 577899999999999999999865
|
... |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-14 Score=129.70 Aligned_cols=157 Identities=22% Similarity=0.305 Sum_probs=112.5
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC--
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-- 286 (390)
.++..+. ..+..+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++. .++++..+|+.+ +++.+
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 3445555 6677899999999999999999988 7889999998 6777766543 578999999887 66543
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCC-CcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP-EVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
|+|++.++++++++.. .+++++++.|+|||++++.+....... ............... ... .....+..+|.++
T Consensus 89 D~v~~~~~~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~ 163 (241)
T PRK08317 89 DAVRSDRVLQHLEDPA--RALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFW--SDH-FADPWLGRRLPGL 163 (241)
T ss_pred eEEEEechhhccCCHH--HHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHH--Hhc-CCCCcHHHHHHHH
Confidence 9999999999998865 889999999999999999886432210 000000111111111 101 2233456789999
Q ss_pred HHHCCCCeeEEEec
Q 016366 366 AIAAGFKGINFASC 379 (390)
Q Consensus 366 l~~aGf~~~~~~~~ 379 (390)
++++||+.+++...
T Consensus 164 l~~aGf~~~~~~~~ 177 (241)
T PRK08317 164 FREAGLTDIEVEPY 177 (241)
T ss_pred HHHcCCCceeEEEE
Confidence 99999998876543
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-15 Score=127.75 Aligned_cols=139 Identities=20% Similarity=0.317 Sum_probs=101.9
Q ss_pred CCcceEEEEcCCccHHHHHHH-hhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCC-C--CCCC-cEEEecc
Q 016366 226 QNVERLVDVGGGFGVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-S--VPEG-DAILMKW 293 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~-~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~--~p~~-D~i~~~~ 293 (390)
++..+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.+++ .++++|+++|+++ + ++.. |+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 356899999999999999999 5688999999998 889998886 2689999999998 5 4434 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCC
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aG 370 (390)
++|++++.. .+|+++.+.|++||.+++.+........ ........ .....+.....+. +.++|..+|++||
T Consensus 82 ~l~~~~~~~--~~l~~~~~~lk~~G~~i~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPDPE--KVLKNIIRLLKPGGILIISDPNHNDELP-EQLEELMN-LYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSHHH--HHHHHHHHHEEEEEEEEEEEEEHSHHHH-HHHHHHHH-HHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred chhhccCHH--HHHHHHHHHcCCCcEEEEEECChHHHHH-HHHHHHHH-HHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 999999876 8899999999999999998887322100 01111111 1111111111122 7889999999998
|
... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-14 Score=127.26 Aligned_cols=141 Identities=12% Similarity=0.173 Sum_probs=105.9
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~- 286 (390)
+.+++.++ .....+|||+|||+|..+..++++ ..+++++|+ +.+++.+++. .++++..+|+.+ +++..
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 34555555 445689999999999999999986 457899998 7788876642 458899999987 55554
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
|+|++..++|++++++...++++++++|+|||++++.+....++... . . +-...++.+++.+++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~-~-----~----------~~~~~~~~~el~~~~ 160 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC-T-----V----------GFPFAFKEGELRRYY 160 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC-C-----C----------CCCCccCHHHHHHHh
Confidence 99999999999988888899999999999999987766553332100 0 0 001235788999999
Q ss_pred HHCCCCeeEEE
Q 016366 367 IAAGFKGINFA 377 (390)
Q Consensus 367 ~~aGf~~~~~~ 377 (390)
+ ||+++...
T Consensus 161 ~--~~~~~~~~ 169 (197)
T PRK11207 161 E--GWEMVKYN 169 (197)
T ss_pred C--CCeEEEee
Confidence 6 89987763
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-14 Score=133.08 Aligned_cols=157 Identities=16% Similarity=0.139 Sum_probs=107.6
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC--CCCC-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE--SVPE- 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~--~~p~- 285 (390)
.+++.++ .++.+|||||||+|.++..+++.. .+++++|+ +.+++.++++ ++++++++|+.+ +.+.
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 4555554 456799999999999999999874 57888898 8898887752 578999999866 2333
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcch----HHhhhhhhhhh-hhhhcCCCcccCH
Q 016366 286 G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSS----AARETSLLDVL-LMTRDGGGRERTK 359 (390)
Q Consensus 286 ~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~----~~~~~~~~d~~-~~~~~~~g~~~t~ 359 (390)
. |+|++..++|+++++. .+|++++++|+|||++++............. .......+... -.... -....+.
T Consensus 112 ~fD~V~~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~ 188 (255)
T PRK11036 112 PVDLILFHAVLEWVADPK--SVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLS-PDYPLDP 188 (255)
T ss_pred CCCEEEehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCC-CCCCCCH
Confidence 3 9999999999998876 8999999999999999886544221000000 00000000000 00000 0123578
Q ss_pred HHHHHHHHHCCCCeeEEEecC
Q 016366 360 KEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 360 ~e~~~ll~~aGf~~~~~~~~~ 380 (390)
+++.++++++||++++..-+.
T Consensus 189 ~~l~~~l~~aGf~~~~~~gi~ 209 (255)
T PRK11036 189 EQVYQWLEEAGWQIMGKTGVR 209 (255)
T ss_pred HHHHHHHHHCCCeEeeeeeEE
Confidence 999999999999998766553
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-14 Score=143.18 Aligned_cols=141 Identities=19% Similarity=0.345 Sum_probs=105.9
Q ss_pred ChhhhcccCchHHHHHHHHHhhccHH--HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHh
Q 016366 188 HIFEYASGNPRFNETYHEAMFNHSTI--AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ 264 (390)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~m~~~~~~--~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~ 264 (390)
.+|+++..+++..+.|...|...... ........++ +.++.+|||||||+|.++..+++.+|+.+++++|+ +.|++
T Consensus 378 ~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe 456 (677)
T PRK06922 378 LLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVID 456 (677)
T ss_pred HHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 46777777776666666555432211 1111122233 45678999999999999999999999999999999 77888
Q ss_pred hCCCC-----CCceEEECCCCC-C--CCCC--cEEEeccccccC-----------ChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 265 DAPSY-----AGVEHVGGNMFE-S--VPEG--DAILMKWILHCW-----------DDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 265 ~a~~~-----~rv~~~~gd~~~-~--~p~~--D~i~~~~vlh~~-----------~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.+++. .+++++++|+.+ + ++.+ |+|+++.++|++ ++.+..++|++++++|||||++++.
T Consensus 457 ~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 457 TLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 87652 467889999876 4 4443 999999999976 2456789999999999999999999
Q ss_pred ecccCC
Q 016366 324 NSIVPE 329 (390)
Q Consensus 324 e~~~~~ 329 (390)
|.+.++
T Consensus 537 D~v~~E 542 (677)
T PRK06922 537 DGIMTE 542 (677)
T ss_pred eCccCC
Confidence 986654
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-13 Score=122.42 Aligned_cols=156 Identities=12% Similarity=0.077 Sum_probs=107.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCC--cEEEeccccccCChhH
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH 302 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~ 302 (390)
...+|||||||+|.++..+++.+ +.+++++|+ ++|++.+++. ..++++|+.+ |++++ |+|++..++|+++|.+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~ 127 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIE 127 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCHH
Confidence 46799999999999999999887 568999998 8999998864 3568899988 77765 9999999999998866
Q ss_pred HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhh--hhhhhhhhhhcCC-----------CcccCHHHHHHHHHHC
Q 016366 303 CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET--SLLDVLLMTRDGG-----------GRERTKKEYTELAIAA 369 (390)
Q Consensus 303 ~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~-----------g~~~t~~e~~~ll~~a 369 (390)
++|++++|+|||. +++.+...++.........+. ..+...-.....+ ...++.+++.++++++
T Consensus 128 --~~l~e~~RvLkp~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~ 203 (226)
T PRK05785 128 --KVIAEFTRVSRKQ--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKY 203 (226)
T ss_pred --HHHHHHHHHhcCc--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999999993 445555444321100000000 0000010111101 1345889999999998
Q ss_pred CCCeeEEEecCC-ceeEEEEeC
Q 016366 370 GFKGINFASCVC-NLYIMEFFK 390 (390)
Q Consensus 370 Gf~~~~~~~~~~-~~~vi~~~k 390 (390)
| ..++...... -..+..++|
T Consensus 204 ~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 204 A-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred h-CceEEEEccccEEEEEEEee
Confidence 4 6677777764 444655554
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-13 Score=125.71 Aligned_cols=149 Identities=13% Similarity=0.162 Sum_probs=108.2
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCceEEECCCCC-CCCCC--c
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--D 287 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~-~~p~~--D 287 (390)
.....+++.++ ..+..+|||+|||+|.++..+.+. ..+++++|+ +.+++.+++. ..+.++++|+.+ +++.. |
T Consensus 29 ~~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD 105 (251)
T PRK10258 29 QSADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFD 105 (251)
T ss_pred HHHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEE
Confidence 34445666665 445689999999999999888765 467899998 8899988864 446889999988 66654 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHH
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 367 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~ 367 (390)
+|+++.++|+.++.. .+|++++++|+|||.+++..+....-+ .....+..+... .......+.+++.+++.
T Consensus 106 ~V~s~~~l~~~~d~~--~~l~~~~~~Lk~gG~l~~~~~~~~~~~-----el~~~~~~~~~~--~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 106 LAWSNLAVQWCGNLS--TALRELYRVVRPGGVVAFTTLVQGSLP-----ELHQAWQAVDER--PHANRFLPPDAIEQALN 176 (251)
T ss_pred EEEECchhhhcCCHH--HHHHHHHHHcCCCeEEEEEeCCCCchH-----HHHHHHHHhccC--CccccCCCHHHHHHHHH
Confidence 999999999888765 899999999999999999877643311 000111100000 11234568999999999
Q ss_pred HCCCCe
Q 016366 368 AAGFKG 373 (390)
Q Consensus 368 ~aGf~~ 373 (390)
..|+..
T Consensus 177 ~~~~~~ 182 (251)
T PRK10258 177 GWRYQH 182 (251)
T ss_pred hCCcee
Confidence 888764
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=125.36 Aligned_cols=136 Identities=17% Similarity=0.257 Sum_probs=104.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--CCceEEECCCCC-CCCCC--cEEEeccccccCCh
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDD 300 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d 300 (390)
.+.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. ++++++.+|+.+ +++.. |+|++.+++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 447899999999999999999999999999998 7777766653 478999999987 65543 99999999999877
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
.. ++|++++++|+|||++++.++..... .. ..... .. .....++.++|.+++.++ |+.+.+.
T Consensus 114 ~~--~~l~~~~~~L~~~G~l~~~~~~~~~~------~~---~~~~~--~~-~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 LS--QALSELARVLKPGGLLAFSTFGPGTL------HE---LRQSF--GQ-HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred HH--HHHHHHHHHcCCCcEEEEEeCCccCH------HH---HHHHH--HH-hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 65 89999999999999999886543321 00 00000 00 134556889999999988 8876553
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-13 Score=122.77 Aligned_cols=146 Identities=20% Similarity=0.140 Sum_probs=102.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhh----CCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCC-CCCC-C-cEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPE-G-DAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~----~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~-~~p~-~-D~i~~~~v 294 (390)
.+..+|||||||+|.++..+++. .|+.+++++|+ +.+++.+++. .++++..++... +.+. . |+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 46679999999999998888763 46679999998 8899888764 457777765544 3333 3 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhh-h-h-cCC-----CcccCHHHHHHHH
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM-T-R-DGG-----GRERTKKEYTELA 366 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-~-~-~~~-----g~~~t~~e~~~ll 366 (390)
+||+++++...+|+++++.++ |.+++.+...+.. .. ........... . . ..+ .+.++.+++.+++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~----~~-~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll 211 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL----AY-ALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALA 211 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH----HH-HHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHh
Confidence 999999888899999999998 5666666554321 00 00000000000 0 0 001 2357899999999
Q ss_pred HHCCCCeeEEEec
Q 016366 367 IAAGFKGINFASC 379 (390)
Q Consensus 367 ~~aGf~~~~~~~~ 379 (390)
++ ||++...++.
T Consensus 212 ~~-Gf~~~~~~~~ 223 (232)
T PRK06202 212 PQ-GWRVERQWPF 223 (232)
T ss_pred hC-CCeEEeccce
Confidence 99 9998777665
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-14 Score=111.62 Aligned_cols=88 Identities=19% Similarity=0.435 Sum_probs=75.8
Q ss_pred EEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCC-CCCCC--cEEEeccccccCChhHHH
Q 016366 232 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCL 304 (390)
Q Consensus 232 LDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~ 304 (390)
||+|||+|.++..++++ +..+++++|. +.+++.+++. .+++++.+|+.+ ++++. |+|++.+++|++++ ..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~--~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED--PE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH--HH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC--HH
Confidence 89999999999999999 8889999998 7788887763 557799999998 88865 99999999999955 45
Q ss_pred HHHHHHHHhCCCCcEEEE
Q 016366 305 RILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 305 ~~L~~~~~~L~pgG~lli 322 (390)
+++++++|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999886
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-13 Score=122.95 Aligned_cols=182 Identities=12% Similarity=0.081 Sum_probs=117.2
Q ss_pred hhcccCchHHHHHHHHHhhccHHHHHHHHHHhhc-cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC
Q 016366 191 EYASGNPRFNETYHEAMFNHSTIAMERILEHYEG-FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS 268 (390)
Q Consensus 191 ~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~-~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~ 268 (390)
+....++.....+...+..........+++.++. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~ 95 (219)
T TIGR02021 18 ARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARN 95 (219)
T ss_pred HHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 3333333333444444433333334445554442 345789999999999999999886 357888887 888888765
Q ss_pred C-------CCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhh
Q 016366 269 Y-------AGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETS 341 (390)
Q Consensus 269 ~-------~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~ 341 (390)
+ .++++..+|+.+.....|+|++..++++++++....+++++++.+++++.+.+. +.. .......
T Consensus 96 ~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~----~~~----~~~~~~~ 167 (219)
T TIGR02021 96 RAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA----PKT----AWLAFLK 167 (219)
T ss_pred HHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC----CCc----hHHHHHH
Confidence 2 378999999877333349999999999998877889999999999876554432 111 0101111
Q ss_pred hhhhhhhh--hcCCCcccCHHHHHHHHHHCCCCeeEEEecCCc
Q 016366 342 LLDVLLMT--RDGGGRERTKKEYTELAIAAGFKGINFASCVCN 382 (390)
Q Consensus 342 ~~d~~~~~--~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 382 (390)
.+...... ....-..++.+++.++++++||+++.......+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~ 210 (219)
T TIGR02021 168 MIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVSTG 210 (219)
T ss_pred HHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccccc
Confidence 11111000 001123458999999999999999988766543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.52 E-value=7e-13 Score=115.52 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=119.9
Q ss_pred eEEEEcCCccHHHHHHHhhCCCCeEEEecch-HH----HhhCCC--CCCce-EEECCCCCC-CC---------CC-cEEE
Q 016366 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLP-HV----VQDAPS--YAGVE-HVGGNMFES-VP---------EG-DAIL 290 (390)
Q Consensus 230 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~-~~----~~~a~~--~~rv~-~~~gd~~~~-~p---------~~-D~i~ 290 (390)
+|||||+|+|..+..+++++|++++.-.|.. .. .+.+.+ .+++. -+..|+.++ .+ .. |+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 5999999999999999999999999777752 22 111111 23332 234455442 22 13 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCC
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aG 370 (390)
+.|++|..+.+.+..+++.+.++|+|||.|++.-++..+..- +..-...+|.......+....|+.+++.++.+++|
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~---ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKF---TSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEe---CCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 999999999999999999999999999999999988765421 11223355555544445567899999999999999
Q ss_pred CCeeEEEecCCceeEEEEeC
Q 016366 371 FKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 371 f~~~~~~~~~~~~~vi~~~k 390 (390)
++..+.+.++.++.+++++|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 99999999999999988886
|
The function of this family is unknown. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.2e-13 Score=119.59 Aligned_cols=140 Identities=10% Similarity=0.099 Sum_probs=102.6
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC-cE
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA 288 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-D~ 288 (390)
.+++.++ ...+.+|||+|||+|..+..++++ ..+++++|+ +.+++.+++. -++++...|+.. +++.. |+
T Consensus 21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence 4555555 445689999999999999999986 357888898 7788876542 136777788765 44444 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHH
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 368 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~ 368 (390)
|++..++|+++++....++++++++|+|||++++.+....+. .+.. . +.....+.+++.++|+
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~-~~~~-------~--------~~~~~~~~~el~~~f~- 160 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTAD-YPCH-------M--------PFSFTFKEDELRQYYA- 160 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCC-CCCC-------C--------CcCccCCHHHHHHHhC-
Confidence 999999999988888899999999999999988776543221 0100 0 0122457899999985
Q ss_pred CCCCeeEEE
Q 016366 369 AGFKGINFA 377 (390)
Q Consensus 369 aGf~~~~~~ 377 (390)
+|+++...
T Consensus 161 -~~~~~~~~ 168 (195)
T TIGR00477 161 -DWELLKYN 168 (195)
T ss_pred -CCeEEEee
Confidence 58887765
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-14 Score=113.19 Aligned_cols=87 Identities=23% Similarity=0.428 Sum_probs=59.7
Q ss_pred EEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------C---CceEEECCCCCCCC-CC-cEEEeccccccCC
Q 016366 232 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A---GVEHVGGNMFESVP-EG-DAILMKWILHCWD 299 (390)
Q Consensus 232 LDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~---rv~~~~gd~~~~~p-~~-D~i~~~~vlh~~~ 299 (390)
||||||+|.++..+++++|..+++++|+ +.+++.++++ . ++++...|..+..+ .. |+|++.+++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999998 8899888874 2 23444445444322 23 9999999999995
Q ss_pred hhHHHHHHHHHHHhCCCCcEE
Q 016366 300 DDHCLRILKNCYKAVPGNGKV 320 (390)
Q Consensus 300 d~~~~~~L~~~~~~L~pgG~l 320 (390)
+. ..+|+++++.|+|||+|
T Consensus 81 ~~--~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DI--EAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -H--HHHHHHHTTT-TSS-EE
T ss_pred hH--HHHHHHHHHHcCCCCCC
Confidence 54 49999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.1e-13 Score=116.27 Aligned_cols=137 Identities=13% Similarity=0.217 Sum_probs=101.4
Q ss_pred hhccHHHHHH-HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCC
Q 016366 208 FNHSTIAMER-ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNM 279 (390)
Q Consensus 208 ~~~~~~~~~~-l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~ 279 (390)
...+...+.. ++..+. ..+..+|||||||+|.++..+++++|+.+++++|+ +.+++.++++ ++++++.+|.
T Consensus 12 ~~~~~~~~r~~~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~ 90 (187)
T PRK08287 12 VPMTKEEVRALALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA 90 (187)
T ss_pred CCCchHHHHHHHHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc
Confidence 3344433333 334444 56778999999999999999999999999999998 7788777642 5789999998
Q ss_pred CCCCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccC
Q 016366 280 FESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERT 358 (390)
Q Consensus 280 ~~~~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t 358 (390)
..+++.. |+|++....++ ...+++.+++.|+|||++++..... .+
T Consensus 91 ~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~-----------------------------~~ 136 (187)
T PRK08287 91 PIELPGKADAIFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILL-----------------------------EN 136 (187)
T ss_pred hhhcCcCCCEEEECCCccC-----HHHHHHHHHHhcCCCeEEEEEEecH-----------------------------hh
Confidence 6555544 99998876543 2468999999999999998744321 12
Q ss_pred HHHHHHHHHHCCCCeeEEEec
Q 016366 359 KKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 359 ~~e~~~ll~~aGf~~~~~~~~ 379 (390)
.+++.+++++.||+.+++...
T Consensus 137 ~~~~~~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 137 LHSALAHLEKCGVSELDCVQL 157 (187)
T ss_pred HHHHHHHHHHCCCCcceEEEE
Confidence 456678999999987776443
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.4e-14 Score=123.73 Aligned_cols=143 Identities=15% Similarity=0.140 Sum_probs=104.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CC--ceEEECCCCC-CCC--CCcEEEecccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AG--VEHVGGNMFE-SVP--EGDAILMKWILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~r--v~~~~gd~~~-~~p--~~D~i~~~~vlh~ 297 (390)
...+|||||||.|.++..+++.. .+++++|+ +..++.|+.+ .. +++.+...++ ... ..|+|+|..+++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 46899999999999999999986 78899998 8899988864 22 4466666655 222 2399999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhh-hhhhhcCCC-----cccCHHHHHHHHHHCCC
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDV-LLMTRDGGG-----RERTKKEYTELAIAAGF 371 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~g-----~~~t~~e~~~ll~~aGf 371 (390)
.++++ .+++.|.+.+||||.+++++....... .....+.. ..+-..+.| +...++|...++.++|+
T Consensus 137 v~dp~--~~~~~c~~lvkP~G~lf~STinrt~ka------~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~ 208 (243)
T COG2227 137 VPDPE--SFLRACAKLVKPGGILFLSTINRTLKA------YLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANL 208 (243)
T ss_pred cCCHH--HHHHHHHHHcCCCcEEEEeccccCHHH------HHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence 99988 799999999999999999887643211 11111110 011111232 45678999999999999
Q ss_pred CeeEEEec
Q 016366 372 KGINFASC 379 (390)
Q Consensus 372 ~~~~~~~~ 379 (390)
.+.....+
T Consensus 209 ~~~~~~g~ 216 (243)
T COG2227 209 KIIDRKGL 216 (243)
T ss_pred eEEeecce
Confidence 88876554
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-13 Score=127.04 Aligned_cols=105 Identities=10% Similarity=0.209 Sum_probs=83.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-----CC--ceEEECCCCCC--CC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-----AG--VEHVGGNMFES--VP 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-----~r--v~~~~gd~~~~--~p 284 (390)
+.++..++ ++.+|||+|||+|..+..++++.+ ..+++++|+ ++|++.+++. ++ |.++++|+.+. ++
T Consensus 55 ~~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 55 DEIAAATG---AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP 131 (301)
T ss_pred HHHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh
Confidence 34444443 457899999999999999999987 588999999 7788777642 33 56789999762 33
Q ss_pred C-----C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 285 E-----G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 285 ~-----~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
. . .++++.++++++++++...+|++++++|+|||.++|.
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 2 2 3557778999999999999999999999999999873
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=6e-13 Score=133.95 Aligned_cols=144 Identities=16% Similarity=0.274 Sum_probs=110.2
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCC---CCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE---SVPEG 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~---~~p~~ 286 (390)
...+++.++ ..+..+|||||||+|.++..+++.+. +++++|. +.+++.+++ .++++++++|+.+ ++|..
T Consensus 26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 345666665 44567999999999999999998864 6788887 778876653 2579999999964 44543
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHH
Q 016366 287 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 364 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ 364 (390)
|+|++..++|++++++..++|+++++.|+|||++++.|.+........ . . ......++...|.+
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~------~------~--~~~~~~~~~~~~~~ 168 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK------R------K--NNPTHYREPRFYTK 168 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc------c------c--CCCCeecChHHHHH
Confidence 999999999999998888999999999999999999998754421100 0 0 01233466889999
Q ss_pred HHHHCCCCeeE
Q 016366 365 LAIAAGFKGIN 375 (390)
Q Consensus 365 ll~~aGf~~~~ 375 (390)
++.++||....
T Consensus 169 ~f~~~~~~~~~ 179 (475)
T PLN02336 169 VFKECHTRDED 179 (475)
T ss_pred HHHHheeccCC
Confidence 99999998764
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-13 Score=123.61 Aligned_cols=108 Identities=18% Similarity=0.280 Sum_probs=85.7
Q ss_pred HHHHHHhhccCCcceEEEEcCCccH----HHHHHHhhCC-----CCeEEEecc-hHHHhhCCCC----------------
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGV----TLSMITSKYP-----QIKAVNFDL-PHVVQDAPSY---------------- 269 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~----~~~~l~~~~p-----~~~~~~~Dl-~~~~~~a~~~---------------- 269 (390)
+.+.+..+ ..+..+|+|+|||+|. ++..+++.++ +.+++++|+ +.+++.|++.
T Consensus 89 p~l~~~~~-~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~ 167 (264)
T smart00138 89 PLLIASRR-HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLA 167 (264)
T ss_pred HHHHHhcC-CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHh
Confidence 44444332 3456799999999996 4556666554 578999998 8899988762
Q ss_pred -----------------CCceEEECCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 270 -----------------AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 270 -----------------~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.+|+|.++|+.+ +.+.+ |+|+|.++||+++++...+++++++++|+|||++++..
T Consensus 168 ~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 168 RYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred hhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 268999999998 44443 99999999999998888899999999999999999854
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.3e-13 Score=128.05 Aligned_cols=153 Identities=10% Similarity=0.073 Sum_probs=115.1
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCCCCCC-CcEEE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFESVPE-GDAIL 290 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~~~p~-~D~i~ 290 (390)
..+++.+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.++++ .++++...|+.+. +. .|+|+
T Consensus 157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l-~~~fD~Iv 233 (383)
T PRK11705 157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL-NGQFDRIV 233 (383)
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc-CCCCCEEE
Confidence 34556665 6777899999999999999998876 578999998 8888877753 2478888887643 33 39999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCC
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aG 370 (390)
+..+++|.++.....++++++++|+|||++++.+...+...... ..+++.. .+++|..++.+++.+.++ .|
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~y---ifp~g~lps~~~i~~~~~-~~ 304 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINKY---IFPNGCLPSVRQIAQASE-GL 304 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCceee---ecCCCcCCCHHHHHHHHH-CC
Confidence 99999999877777999999999999999999877654321110 1122211 236788889999988866 58
Q ss_pred CCeeEEEecC
Q 016366 371 FKGINFASCV 380 (390)
Q Consensus 371 f~~~~~~~~~ 380 (390)
|.+.++...+
T Consensus 305 ~~v~d~~~~~ 314 (383)
T PRK11705 305 FVMEDWHNFG 314 (383)
T ss_pred cEEEEEecCh
Confidence 9988877654
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.9e-12 Score=114.69 Aligned_cols=143 Identities=12% Similarity=0.065 Sum_probs=98.5
Q ss_pred HhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHh----hCCCCCCceEEECCCCCC-----CCCC-cEE
Q 016366 221 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ----DAPSYAGVEHVGGNMFES-----VPEG-DAI 289 (390)
Q Consensus 221 ~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~----~a~~~~rv~~~~gd~~~~-----~p~~-D~i 289 (390)
.++ ..+..+|||+|||+|.++..+++..+..+++++|+ +.|++ .+++.++|.++.+|+.++ ++.. |+|
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 345 66788999999999999999999887668899998 66655 445557899999998753 2233 887
Q ss_pred EeccccccCChh-HHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHH
Q 016366 290 LMKWILHCWDDD-HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 368 (390)
Q Consensus 290 ~~~~vlh~~~d~-~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~ 368 (390)
++ +.+++ ....+|+++++.|||||+++|.-...+-+ ... ... +..++..+++++
T Consensus 146 ~~-----d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d--------------~~~-----~~~-~~~~~~~~~l~~ 200 (226)
T PRK04266 146 YQ-----DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSID--------------VTK-----DPK-EIFKEEIRKLEE 200 (226)
T ss_pred EE-----CCCChhHHHHHHHHHHHhcCCCcEEEEEEeccccc--------------CcC-----CHH-HHHHHHHHHHHH
Confidence 73 34433 23457899999999999999952211110 000 000 112445699999
Q ss_pred CCCCeeEEEecCCc---eeEEEEe
Q 016366 369 AGFKGINFASCVCN---LYIMEFF 389 (390)
Q Consensus 369 aGf~~~~~~~~~~~---~~vi~~~ 389 (390)
+||++++......+ +..+.++
T Consensus 201 aGF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 201 GGFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred cCCeEEEEEcCCCCcCCeEEEEEE
Confidence 99999999887533 5555544
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=116.61 Aligned_cols=103 Identities=16% Similarity=0.378 Sum_probs=88.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-CCCceEEECCCCCCCCCC--cEEEeccccccCCh
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFESVPEG--DAILMKWILHCWDD 300 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~~~p~~--D~i~~~~vlh~~~d 300 (390)
..+..+|||||||+|..+..+++..|..+++++|+ +.+++.|++ .+++++..+|+.++++.+ |+|++..+|||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34667899999999999999999888899999998 889999987 477999999998866554 99999999999988
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
++..++++++++++ ++.++|.+...+.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 88889999999997 5688888876443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-12 Score=112.37 Aligned_cols=134 Identities=19% Similarity=0.206 Sum_probs=104.8
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCC-CcEEEeccccccC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE-GDAILMKWILHCW 298 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~-~D~i~~~~vlh~~ 298 (390)
.+..+|||+|||+|.++..+++..+ +++++|+ +.+++.++++ .+++++.+|..+..+. .|+|+++..+|+.
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 3457899999999999999999876 7888887 8888877652 3588899998774333 4999999888766
Q ss_pred ChhH-------------------HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCH
Q 016366 299 DDDH-------------------CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTK 359 (390)
Q Consensus 299 ~d~~-------------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~ 359 (390)
++.. ..++|+++.+.|+|||++++++.... ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~ 146 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GE 146 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------Ch
Confidence 5421 35789999999999999998765321 14
Q ss_pred HHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 360 KEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 360 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
.++.+++++.||....+...+.++-.+.++|
T Consensus 147 ~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 147 PDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred HHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 6678899999999988888877777666664
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-13 Score=120.70 Aligned_cols=141 Identities=17% Similarity=0.137 Sum_probs=104.3
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------C----CceEEECCCCCCCCCCcEEEeccc
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------A----GVEHVGGNMFESVPEGDAILMKWI 294 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~----rv~~~~gd~~~~~p~~D~i~~~~v 294 (390)
+.+|||+|||+|.++..|++.. ..++++|+ +.+++.|+++ . |+++.+.|.+...+..|+|+|..+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 3679999999999999999986 66788898 8899988863 2 367777777665555799999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhh-hhhhhhhc----CCCcccCHHHHHHHHHHC
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL-DVLLMTRD----GGGRERTKKEYTELAIAA 369 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~-d~~~~~~~----~~g~~~t~~e~~~ll~~a 369 (390)
++|..|+. .+++.+.+.|+|||+++|.+....-.. +. ....+ +....... ...+..++++...+++.+
T Consensus 168 leHV~dp~--~~l~~l~~~lkP~G~lfittinrt~lS---~~--~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~ 240 (282)
T KOG1270|consen 168 LEHVKDPQ--EFLNCLSALLKPNGRLFITTINRTILS---FA--GTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNAN 240 (282)
T ss_pred HHHHhCHH--HHHHHHHHHhCCCCceEeeehhhhHHH---hh--ccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhc
Confidence 99998876 999999999999999999877533210 00 00011 11111111 134567999999999999
Q ss_pred CCCeeEEE
Q 016366 370 GFKGINFA 377 (390)
Q Consensus 370 Gf~~~~~~ 377 (390)
|+++..+.
T Consensus 241 ~~~v~~v~ 248 (282)
T KOG1270|consen 241 GAQVNDVV 248 (282)
T ss_pred Ccchhhhh
Confidence 99887664
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-13 Score=108.56 Aligned_cols=88 Identities=18% Similarity=0.399 Sum_probs=73.6
Q ss_pred EEEEcCCccHHHHHHHhhC---CCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC--cEEEec-ccccc
Q 016366 231 LVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMK-WILHC 297 (390)
Q Consensus 231 iLDiG~G~G~~~~~l~~~~---p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~--D~i~~~-~vlh~ 297 (390)
|||+|||+|..+..+++.+ |+.+++++|+ +.+++.++++ .+++++++|+.+ +...+ |+|++. .++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5688999998 8898888763 489999999988 54443 999995 55999
Q ss_pred CChhHHHHHHHHHHHhCCCCc
Q 016366 298 WDDDHCLRILKNCYKAVPGNG 318 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG 318 (390)
+++++..++|+++.+.|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-12 Score=116.05 Aligned_cols=146 Identities=18% Similarity=0.192 Sum_probs=99.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCCcEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEGDAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~D~i~~~~vlh~ 297 (390)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. +++.+..+|+.......|+|++..++||
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 4567999999999999999998764 5888887 7888877652 4789999995333222399999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhh--hhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLL--MTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
++++....+++++.+.+++++. +.... ..+ .. .....+.-.+ ..........+.++|.++++++||++.+
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~-i~~~~---~~~---~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 211 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSLI-FTFAP---YTP---LL-ALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVR 211 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeEE-EEECC---ccH---HH-HHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEe
Confidence 9998888999999998754443 32211 110 00 0000000000 0000122345789999999999999999
Q ss_pred EEecCC
Q 016366 376 FASCVC 381 (390)
Q Consensus 376 ~~~~~~ 381 (390)
+.+...
T Consensus 212 ~~~~~~ 217 (230)
T PRK07580 212 TERISS 217 (230)
T ss_pred eeeccc
Confidence 887763
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=111.02 Aligned_cols=176 Identities=15% Similarity=0.114 Sum_probs=118.0
Q ss_pred HHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCce
Q 016366 201 ETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVE 273 (390)
Q Consensus 201 ~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~ 273 (390)
..|++.|+.+.+..+..+-..+. .+....+|+||||+|..-...- --|..++|.+|- +.|.+.+.+ ...++
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~g-k~~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~ 128 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLG-KSGKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVE 128 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhc-ccCccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccCcceE
Confidence 35666666665544444332222 3455678999999998764432 236788999996 667666553 25576
Q ss_pred -EEECCCCC-C-CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhh
Q 016366 274 -HVGGNMFE-S-VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM 348 (390)
Q Consensus 274 -~~~gd~~~-~-~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 348 (390)
|+.++.++ + ++++ |+|++..+|+-..++. +.|+++++.|+|||++++.|....+.. .+........+-...
T Consensus 129 ~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~--k~L~e~~rlLRpgG~iifiEHva~~y~--~~n~i~q~v~ep~~~ 204 (252)
T KOG4300|consen 129 RFVVADGENLPQLADGSYDTVVCTLVLCSVEDPV--KQLNEVRRLLRPGGRIIFIEHVAGEYG--FWNRILQQVAEPLWH 204 (252)
T ss_pred EEEeechhcCcccccCCeeeEEEEEEEeccCCHH--HHHHHHHHhcCCCcEEEEEecccccch--HHHHHHHHHhchhhh
Confidence 89999988 4 5665 9999999998776654 999999999999999999999876542 111112222222111
Q ss_pred hhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCcee
Q 016366 349 TRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLY 384 (390)
Q Consensus 349 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 384 (390)
.. ..|-..|.+.|+. |+++-|+..+......+..
T Consensus 205 ~~-~dGC~ltrd~~e~-Leda~f~~~~~kr~~~~tt 238 (252)
T KOG4300|consen 205 LE-SDGCVLTRDTGEL-LEDAEFSIDSCKRFNFGTT 238 (252)
T ss_pred ee-ccceEEehhHHHH-hhhcccccchhhcccCCce
Confidence 11 2676777777764 5778899988776664444
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-12 Score=119.36 Aligned_cols=139 Identities=14% Similarity=0.135 Sum_probs=102.5
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC-cEE
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAI 289 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-D~i 289 (390)
++..++ ...+.+|||||||+|..+..+++. +.+++++|. +.+++.+++. -++++...|+.+ +++.. |+|
T Consensus 112 ~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I 188 (287)
T PRK12335 112 VLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFI 188 (287)
T ss_pred HHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEE
Confidence 333333 334569999999999999999886 468899998 7777766542 368888889876 45444 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHC
Q 016366 290 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA 369 (390)
Q Consensus 290 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~a 369 (390)
++..++|+++++....++++++++|+|||+++++.....+.... . .+....++.++++++++
T Consensus 189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~--------~--------~p~~~~~~~~el~~~~~-- 250 (287)
T PRK12335 189 LSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPC--------P--------MPFSFTFKEGELKDYYQ-- 250 (287)
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCC--------C--------CCCCcccCHHHHHHHhC--
Confidence 99999999988888899999999999999988766543322100 0 01123457899999995
Q ss_pred CCCeeEEE
Q 016366 370 GFKGINFA 377 (390)
Q Consensus 370 Gf~~~~~~ 377 (390)
+|++++..
T Consensus 251 ~~~i~~~~ 258 (287)
T PRK12335 251 DWEIVKYN 258 (287)
T ss_pred CCEEEEEe
Confidence 49888764
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.6e-12 Score=114.21 Aligned_cols=155 Identities=12% Similarity=0.106 Sum_probs=104.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hH------HHhhCCC-CCCceEEECCCCC-CCCCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PH------VVQDAPS-YAGVEHVGGNMFE-SVPEG 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~------~~~~a~~-~~rv~~~~gd~~~-~~p~~ 286 (390)
..+..+++.+ .+++|||||||+|.++..++++.+. .++++|- +. .+++... ..++.+....+++ +....
T Consensus 105 ~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315)
T PF08003_consen 105 DRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315)
T ss_pred HHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence 4455666423 4689999999999999999999764 5888883 11 1222221 1233344334443 33233
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
|+|+|..||+|..++- ..|+.+++.|+|||.+++-+.+.+.+........ ...-.|-. --..+|...+..|
T Consensus 183 FDtVF~MGVLYHrr~Pl--~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~---~rYa~m~n---v~FiPs~~~L~~w 254 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRSPL--DHLKQLKDSLRPGGELVLETLVIDGDENTVLVPE---DRYAKMRN---VWFIPSVAALKNW 254 (315)
T ss_pred cCEEEEeeehhccCCHH--HHHHHHHHhhCCCCEEEEEEeeecCCCceEEccC---CcccCCCc---eEEeCCHHHHHHH
Confidence 9999999999999876 8899999999999999987777766432110000 00001110 1235799999999
Q ss_pred HHHCCCCeeEEEecC
Q 016366 366 AIAAGFKGINFASCV 380 (390)
Q Consensus 366 l~~aGf~~~~~~~~~ 380 (390)
++++||+.+++..+.
T Consensus 255 l~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 255 LERAGFKDVRCVDVS 269 (315)
T ss_pred HHHcCCceEEEecCc
Confidence 999999999987663
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9e-12 Score=113.51 Aligned_cols=146 Identities=14% Similarity=0.080 Sum_probs=99.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-C-CC-CC-cEEEecccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-S-VP-EG-DAILMKWIL 295 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~-~p-~~-D~i~~~~vl 295 (390)
.+..+|||||||+|.++..+++. ..+++++|+ +.+++.++++ .+++++.+|+.+ + .+ .. |+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 45679999999999999988876 356888887 6677666542 357788888765 2 12 23 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhh-hhhhhhhhhhc--CCCcccCHHHHHHHHHHCCCC
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET-SLLDVLLMTRD--GGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~-~~~d~~~~~~~--~~g~~~t~~e~~~ll~~aGf~ 372 (390)
++.++.. .+|+++.+.|+|||++++....... .. ...... ...-....... ......+.++|.++++++||+
T Consensus 125 ~~~~~~~--~~l~~~~~~L~~gG~l~v~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 199 (233)
T PRK05134 125 EHVPDPA--SFVRACAKLVKPGGLVFFSTLNRNL--KS-YLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLE 199 (233)
T ss_pred hccCCHH--HHHHHHHHHcCCCcEEEEEecCCCh--HH-HHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCe
Confidence 9988765 8899999999999999887543111 00 000000 00000000000 013356889999999999999
Q ss_pred eeEEEe
Q 016366 373 GINFAS 378 (390)
Q Consensus 373 ~~~~~~ 378 (390)
+++...
T Consensus 200 ~v~~~~ 205 (233)
T PRK05134 200 VQDITG 205 (233)
T ss_pred Eeeeee
Confidence 987754
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=115.48 Aligned_cols=142 Identities=11% Similarity=0.045 Sum_probs=96.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----------CCceEEECCCCCCCCC-CcEEEecc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFESVPE-GDAILMKW 293 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----------~rv~~~~gd~~~~~p~-~D~i~~~~ 293 (390)
+..+|||||||+|.++..++++ +.+++++|+ +.|++.++++ .++++..+|+.+. +. .|+|+|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-SGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-CCCcCEEEEcC
Confidence 4579999999999999999986 467899998 7888877653 2468888887542 33 39999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCC------CcccCHHHHHHHHH
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG------GRERTKKEYTELAI 367 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------g~~~t~~e~~~ll~ 367 (390)
++||++++....+++++.+ +.+|+. +|.. .+.. ........... .+++ ....+.++++++|+
T Consensus 221 vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~--~p~~---~~~~~l~~~g~-----~~~g~~~~~r~y~~s~eel~~lL~ 288 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLAS-LAEKRL-IISF--APKT---LYYDILKRIGE-----LFPGPSKATRAYLHAEADVERALK 288 (315)
T ss_pred EEEecCHHHHHHHHHHHHh-hcCCEE-EEEe--CCcc---hHHHHHHHHHh-----hcCCCCcCceeeeCCHHHHHHHHH
Confidence 9999998877788888876 455554 4422 1111 00000000000 0111 12347999999999
Q ss_pred HCCCCeeEEEecCCce
Q 016366 368 AAGFKGINFASCVCNL 383 (390)
Q Consensus 368 ~aGf~~~~~~~~~~~~ 383 (390)
++||++.+..-..+.+
T Consensus 289 ~AGf~v~~~~~~~~~~ 304 (315)
T PLN02585 289 KAGWKVARREMTATQF 304 (315)
T ss_pred HCCCEEEEEEEeecce
Confidence 9999988765554433
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-11 Score=105.12 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=90.7
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC-cEEEecccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG-DAILMKWILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~ 297 (390)
++.+|||||||+|..+..++++.|+.+++++|. +.+++.+++. ++++++.+|+.+ +.... |+|++..+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc---
Confidence 478999999999999999999999999999998 7788777652 459999999987 33323 99998752
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
.+ ...+++.+++.|+|||++++.+... ...++.++.++.|+++.+++
T Consensus 122 -~~--~~~~l~~~~~~LkpGG~lv~~~~~~------------------------------~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 122 -AS--LSDLVELCLPLLKPGGRFLALKGRD------------------------------PEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred -cC--HHHHHHHHHHhcCCCeEEEEEeCCC------------------------------hHHHHHHHHHhcCceEeeeE
Confidence 22 3478999999999999999864321 13335666677799988776
Q ss_pred ec
Q 016366 378 SC 379 (390)
Q Consensus 378 ~~ 379 (390)
..
T Consensus 169 ~~ 170 (187)
T PRK00107 169 EL 170 (187)
T ss_pred EE
Confidence 54
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-12 Score=111.41 Aligned_cols=136 Identities=18% Similarity=0.289 Sum_probs=98.8
Q ss_pred HhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCCCCCCC--cEEEecc
Q 016366 221 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFESVPEG--DAILMKW 293 (390)
Q Consensus 221 ~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~~~p~~--D~i~~~~ 293 (390)
.++ -....+++|+|||.|.++..|+.++. +.+++|+ +..++.|++ .++|+++++|+-+..|.+ |+|+++.
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 466 56678999999999999999999974 5677787 888888875 378999999998866765 9999999
Q ss_pred ccccCCh-hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 294 ILHCWDD-DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 294 vlh~~~d-~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
++|++.+ ++...+++++.++|+|||.+++.... + .... ..|.....+.+.++|.+. |.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r--d----------~~c~--------~wgh~~ga~tv~~~~~~~-~~ 173 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR--D----------ANCR--------RWGHAAGAETVLEMLQEH-LT 173 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE---H----------HHHH--------HTT-S--HHHHHHHHHHH-SE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec--C----------Cccc--------ccCcccchHHHHHHHHHH-hh
Confidence 9999986 67889999999999999999986652 1 0011 134445688889999886 66
Q ss_pred eeEEEecC
Q 016366 373 GINFASCV 380 (390)
Q Consensus 373 ~~~~~~~~ 380 (390)
.++...+.
T Consensus 174 ~~~~~~~~ 181 (201)
T PF05401_consen 174 EVERVECR 181 (201)
T ss_dssp EEEEEEEE
T ss_pred heeEEEEc
Confidence 66665553
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-11 Score=116.45 Aligned_cols=108 Identities=22% Similarity=0.285 Sum_probs=86.9
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---------CCceEEECCCCCCCCC-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFESVPE- 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---------~rv~~~~gd~~~~~p~- 285 (390)
-+++.++ .....+|||+|||+|..+..+++++|+.+++++|. +.+++.++++ .+++++.+|.++.++.
T Consensus 219 llL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 219 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence 4566666 33446999999999999999999999999999998 6777777642 3689999999875543
Q ss_pred C-cEEEecccccc---CChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 286 G-DAILMKWILHC---WDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 286 ~-D~i~~~~vlh~---~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
. |+|+++-.+|. .++....++++.+++.|+|||.++++..
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 3 99999866654 4556677999999999999999998753
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=107.62 Aligned_cols=90 Identities=19% Similarity=0.197 Sum_probs=72.4
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCC-CCCC-CcEEEeccccccC
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-SVPE-GDAILMKWILHCW 298 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~~p~-~D~i~~~~vlh~~ 298 (390)
+.+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++++|+.+ +... .|+|++.. ++++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 67999999999999999999999999999998 666665543 2579999999987 3223 39998876 5442
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 299 DDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
..+++.+++.|+|||++++.
T Consensus 122 -----~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 122 -----NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred -----HHHHHHHHHhcCCCCEEEEE
Confidence 36788999999999999875
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.3e-11 Score=106.02 Aligned_cols=132 Identities=12% Similarity=0.093 Sum_probs=98.8
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------------------CCCceEEECCCCC-CCC-
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFE-SVP- 284 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------------------~~rv~~~~gd~~~-~~p- 284 (390)
....++||+|||.|..+..++++ ...++++|+ +.+++.+.+ ..+|+++++|+++ +..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999986 457899998 777776311 2468999999998 421
Q ss_pred -C-CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHH
Q 016366 285 -E-GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 362 (390)
Q Consensus 285 -~-~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~ 362 (390)
. .|.|+-..++|+++.+...++++++.++|+|||++++.....+..... . -....+.+++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-----------------g-pp~~~~~~eL 172 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-----------------G-PPFSVSPAEV 172 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-----------------C-cCCCCCHHHH
Confidence 2 399999999999999999999999999999999988776654331100 0 0123578999
Q ss_pred HHHHHHCCCCeeEEEe
Q 016366 363 TELAIAAGFKGINFAS 378 (390)
Q Consensus 363 ~~ll~~aGf~~~~~~~ 378 (390)
+++|.. +|.+..+..
T Consensus 173 ~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 173 EALYGG-HYEIELLES 187 (213)
T ss_pred HHHhcC-CceEEEEee
Confidence 999864 566665544
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=114.41 Aligned_cols=98 Identities=14% Similarity=0.208 Sum_probs=78.7
Q ss_pred CCcceEEEEcCCccHHHH--HHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCCCCC--CC-cEEEe
Q 016366 226 QNVERLVDVGGGFGVTLS--MITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESVP--EG-DAILM 291 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~--~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~~~p--~~-D~i~~ 291 (390)
.++.+|+|||||.|.++. .+++.+|+.+++++|. +++++.|++. ++|+|..+|..+..+ .. |+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 477899999999884433 3335689999999998 7788777652 579999999987432 23 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 292 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 292 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
. ++|+|..++..++|+++++.|+|||.+++--
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 9999976666799999999999999988743
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.7e-11 Score=112.80 Aligned_cols=108 Identities=17% Similarity=0.285 Sum_probs=85.4
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCCC-cEEE
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEG-DAIL 290 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~~-D~i~ 290 (390)
+++.++ .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.++++ -..+++.+|.+++.+.. |+|+
T Consensus 188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIv 266 (342)
T PRK09489 188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMII 266 (342)
T ss_pred HHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEE
Confidence 444454 23346899999999999999999999999999998 7788877642 23567888887755544 9999
Q ss_pred eccccccC---ChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 291 MKWILHCW---DDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 291 ~~~vlh~~---~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
++-.+|+. ......++++++.+.|+|||.++|+...
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 99999863 2345679999999999999999987654
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-11 Score=108.31 Aligned_cols=146 Identities=20% Similarity=0.317 Sum_probs=108.0
Q ss_pred ceEEEEcCCccHHHHHHHhhCCC--CeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-----CCCCC--cEEEecc
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-----SVPEG--DAILMKW 293 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~--~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-----~~p~~--D~i~~~~ 293 (390)
.+||+||||.|...--+++.+|+ +++...|. |.+++..+++ .++..-.-|+.. +.+.+ |+|++.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 38999999999999999999888 89999997 8888887764 345544455543 23334 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCc---ccCHHHHHHHHHHCC
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGR---ERTKKEYTELAIAAG 370 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~---~~t~~e~~~ll~~aG 370 (390)
+|...+.+.-..+++++++.|||||.|++-|....+-.... . .....++-...+.. +|. .++.+++++++.++|
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR-F-~~~~~i~~nfYVRg-DGT~~YfF~~eeL~~~f~~ag 229 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR-F-KKGQCISENFYVRG-DGTRAYFFTEEELDELFTKAG 229 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh-c-cCCceeecceEEcc-CCceeeeccHHHHHHHHHhcc
Confidence 99999999999999999999999999999988755421100 0 01122333333322 332 468999999999999
Q ss_pred CCeeEEE
Q 016366 371 FKGINFA 377 (390)
Q Consensus 371 f~~~~~~ 377 (390)
|..++..
T Consensus 230 f~~~~~~ 236 (264)
T KOG2361|consen 230 FEEVQLE 236 (264)
T ss_pred cchhccc
Confidence 9887653
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-11 Score=110.39 Aligned_cols=143 Identities=13% Similarity=0.080 Sum_probs=99.7
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCC--CC-cEEEecccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVP--EG-DAILMKWIL 295 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p--~~-D~i~~~~vl 295 (390)
...+|||+|||+|.++..+++..+ +++++|+ +.+++.+++. .++++..+|+.+ +.+ .. |+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 467999999999999999888654 4788887 6777766542 258888888876 322 23 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhh-hhcC-----CCcccCHHHHHHHHHHC
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM-TRDG-----GGRERTKKEYTELAIAA 369 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-~~~~-----~g~~~t~~e~~~ll~~a 369 (390)
|+.++.. .+|+++++.|+|||.+++.+...+.. .. ........+. ...+ .....+..++.++++++
T Consensus 123 ~~~~~~~--~~l~~~~~~L~~gG~l~i~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPDPQ--AFIRACAQLLKPGGILFFSTINRTPK---SY---LLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCCHH--HHHHHHHHhcCCCcEEEEEecCCCch---HH---HHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 9998776 89999999999999998876532110 00 0000000000 0000 12345789999999999
Q ss_pred CCCeeEEEec
Q 016366 370 GFKGINFASC 379 (390)
Q Consensus 370 Gf~~~~~~~~ 379 (390)
||+++++...
T Consensus 195 G~~i~~~~~~ 204 (224)
T TIGR01983 195 GLRVKDVKGL 204 (224)
T ss_pred CCeeeeeeeE
Confidence 9999887643
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-11 Score=107.86 Aligned_cols=139 Identities=19% Similarity=0.284 Sum_probs=96.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-----CCC-ceEEECCCCCCCCC--C-cEEEeccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAG-VEHVGGNMFESVPE--G-DAILMKWILH 296 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~r-v~~~~gd~~~~~p~--~-D~i~~~~vlh 296 (390)
...+.||.|+|.|+.+..++...- -++-.+|. +..++.|++ .++ .++.+..+.+-.|. . |+||+.+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 467999999999999998876442 23444554 677777763 234 45666655553332 2 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEE
Q 016366 297 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINF 376 (390)
Q Consensus 297 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 376 (390)
|++|++..++|++|+++|+|+|.|+|-|++...... .+| ...+.-.|+.+.|+++|++||+++++.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~---------~~D-----~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD---------EFD-----EEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE---------EEE-----TTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc---------ccC-----CccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 999999999999999999999999999998765310 111 113567799999999999999999987
Q ss_pred EecC
Q 016366 377 ASCV 380 (390)
Q Consensus 377 ~~~~ 380 (390)
..-.
T Consensus 200 ~~Q~ 203 (218)
T PF05891_consen 200 EKQK 203 (218)
T ss_dssp EE-T
T ss_pred cccc
Confidence 5543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=102.04 Aligned_cols=142 Identities=17% Similarity=0.200 Sum_probs=94.9
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC---CCCCC--cEEEeccccccCCh
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPEG--DAILMKWILHCWDD 300 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~---~~p~~--D~i~~~~vlh~~~d 300 (390)
+..+|||||||+|.++..+++.. ...++++|+ +++++.+++ .+++++.+|+.+ +++.. |+|++.+++||+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 55799999999999998887653 567788898 778877764 468899999865 24332 99999999999988
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhh---------hhhcCCCcccCHHHHHHHHHHCCC
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLL---------MTRDGGGRERTKKEYTELAIAAGF 371 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~---------~~~~~~g~~~t~~e~~~ll~~aGf 371 (390)
.. ++|+++.+.+++ +++.-+.... +.........-.+ +...+..+.++.+++.++++++||
T Consensus 91 ~~--~~l~e~~r~~~~---~ii~~p~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf 160 (194)
T TIGR02081 91 PE--EILDEMLRVGRH---AIVSFPNFGY-----WRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNL 160 (194)
T ss_pred HH--HHHHHHHHhCCe---EEEEcCChhH-----HHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCC
Confidence 65 789998887653 3332211100 0000000000000 000012346789999999999999
Q ss_pred CeeEEEecC
Q 016366 372 KGINFASCV 380 (390)
Q Consensus 372 ~~~~~~~~~ 380 (390)
++++.....
T Consensus 161 ~v~~~~~~~ 169 (194)
T TIGR02081 161 RILDRAAFD 169 (194)
T ss_pred EEEEEEEec
Confidence 999877664
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.7e-11 Score=96.00 Aligned_cols=100 Identities=15% Similarity=0.214 Sum_probs=78.1
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCCC---CCCC-
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFES---VPEG- 286 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~~---~p~~- 286 (390)
+++.+. .....+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++.+|+... .+..
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP 89 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence 444454 45567999999999999999999999999999998 777776654 25789999987641 2233
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
|+|++....+. ..++++++++.|+|||++++.
T Consensus 90 D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 90 DRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CEEEECCcchh-----HHHHHHHHHHHcCCCCEEEEE
Confidence 99998765432 348999999999999998874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-11 Score=103.81 Aligned_cols=139 Identities=14% Similarity=0.152 Sum_probs=94.9
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-----CCCceEEECCCCC-CCCCC-cE
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFE-SVPEG-DA 288 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~rv~~~~gd~~~-~~p~~-D~ 288 (390)
.+++.++ .-.+.++||+|||.|+.+..++++. ..++.+|. +..++.+++ .-.|+....|+.+ .++.. |+
T Consensus 21 ~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 21 EVLEAVP-LLKPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHHCT-TS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCE
Confidence 4555566 4567899999999999999999985 56777776 445554332 2348889999988 66665 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHH
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 368 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~ 368 (390)
|++..++++++.+...++++++.+.++|||++++...+..++. +. ... ....+.+.|+++.+
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~-p~-------~~~--------~~f~~~~~EL~~~y-- 159 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDY-PC-------PSP--------FPFLLKPGELREYY-- 159 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS----------SS----------S--B-TTHHHHHT--
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCC-CC-------CCC--------CCcccCHHHHHHHh--
Confidence 9999999999999999999999999999999888766532211 10 000 12234577888888
Q ss_pred CCCCeeEE
Q 016366 369 AGFKGINF 376 (390)
Q Consensus 369 aGf~~~~~ 376 (390)
+||.+++.
T Consensus 160 ~dW~il~y 167 (192)
T PF03848_consen 160 ADWEILKY 167 (192)
T ss_dssp TTSEEEEE
T ss_pred CCCeEEEE
Confidence 47888764
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-10 Score=99.58 Aligned_cols=145 Identities=18% Similarity=0.218 Sum_probs=101.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCC---CCCC--cEEEeccccccCC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES---VPEG--DAILMKWILHCWD 299 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~---~p~~--D~i~~~~vlh~~~ 299 (390)
+++.||||+|||.|.++..+.+. .++++.++++ ++.+..+.+ ..+.++++|+.+. +|+. |.|+++.+|.+..
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 46799999999999999888875 5888888887 554444443 3588999999873 5554 9999999999998
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhh---------hhhhcCCCcccCHHHHHHHHHHCC
Q 016366 300 DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL---------LMTRDGGGRERTKKEYTELAIAAG 370 (390)
Q Consensus 300 d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~---------~~~~~~~g~~~t~~e~~~ll~~aG 370 (390)
.++ ++|+++.|+ |...+|.-+-+.. +..+....+.-. .+..+|+=+..|..+++++.++.|
T Consensus 90 ~P~--~vL~EmlRV---gr~~IVsFPNFg~-----W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~ 159 (193)
T PF07021_consen 90 RPD--EVLEEMLRV---GRRAIVSFPNFGH-----WRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELG 159 (193)
T ss_pred HHH--HHHHHHHHh---cCeEEEEecChHH-----HHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCC
Confidence 876 889998776 4455553332211 111111110000 122235566779999999999999
Q ss_pred CCeeEEEecCCc
Q 016366 371 FKGINFASCVCN 382 (390)
Q Consensus 371 f~~~~~~~~~~~ 382 (390)
+++++...+.+.
T Consensus 160 i~I~~~~~~~~~ 171 (193)
T PF07021_consen 160 IRIEERVFLDGG 171 (193)
T ss_pred CEEEEEEEEcCC
Confidence 999998887643
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-10 Score=106.46 Aligned_cols=132 Identities=20% Similarity=0.302 Sum_probs=97.2
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCCC--c
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG--D 287 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~~--D 287 (390)
.+++.++ ....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|++++++.. |
T Consensus 79 ~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD 156 (251)
T TIGR03534 79 AALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFD 156 (251)
T ss_pred HHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCcee
Confidence 3444443 3446899999999999999999999999999998 7788777642 46999999998865543 9
Q ss_pred EEEecccccc------CChhH------------------HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhh
Q 016366 288 AILMKWILHC------WDDDH------------------CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL 343 (390)
Q Consensus 288 ~i~~~~vlh~------~~d~~------------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~ 343 (390)
+|+++-.++. +.... ...+++++.+.|+|||++++....
T Consensus 157 ~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~----------------- 219 (251)
T TIGR03534 157 LIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY----------------- 219 (251)
T ss_pred EEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-----------------
Confidence 9998543332 22111 237899999999999998873210
Q ss_pred hhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 344 DVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 344 d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
...+++.++++++||+.+++....
T Consensus 220 -------------~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 220 -------------DQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred -------------cHHHHHHHHHHhCCCCceEEEeCC
Confidence 124667889999999988876544
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.7e-11 Score=102.81 Aligned_cols=99 Identities=23% Similarity=0.393 Sum_probs=80.2
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC-C-cEEEecccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G-DAILMKWILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~-~-D~i~~~~vlh~ 297 (390)
...+|||+|||+|..+..+++++|+.+++.+|+ +.+++.++++ ++++++..|.++..+. . |+|+++=-+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 568999999999999999999999988999998 7788877652 3389999999986663 3 99999988876
Q ss_pred CCh---hHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 298 WDD---DHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 298 ~~d---~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
-.+ .-..++++.+.+.|+|||.++++-.
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 654 3467899999999999999976444
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.2e-11 Score=101.08 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=85.9
Q ss_pred EEecc-hHHHhhCCCC---------CCceEEECCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEE
Q 016366 255 VNFDL-PHVVQDAPSY---------AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 255 ~~~Dl-~~~~~~a~~~---------~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ll 321 (390)
+++|. +.|++.|+++ .+|+++++|+.+ +++.. |+|++..++|+++|.. ++|++++++|||||+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~--~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRL--RAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHH--HHHHHHHHHcCcCeEEE
Confidence 36777 8898887532 369999999988 77664 9999999999998765 89999999999999999
Q ss_pred EEecccCCCCCcchHHhhhhh-hhhhhhhhcCC-----------CcccCHHHHHHHHHHCCCCeeEEEecCC
Q 016366 322 VMNSIVPEIPEVSSAARETSL-LDVLLMTRDGG-----------GRERTKKEYTELAIAAGFKGINFASCVC 381 (390)
Q Consensus 322 i~e~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~-----------g~~~t~~e~~~ll~~aGf~~~~~~~~~~ 381 (390)
|.|...++............. .-......... ...++.+++.++|+++||+.++......
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~ 150 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISG 150 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcc
Confidence 999876542111000000000 00000000000 1345899999999999999998877763
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-10 Score=100.89 Aligned_cols=133 Identities=11% Similarity=0.088 Sum_probs=98.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------------------CCCceEEECCCCCCCC--
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFESVP-- 284 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------------------~~rv~~~~gd~~~~~p-- 284 (390)
.+..+|||+|||.|..+..++++ +.+++++|+ +..++.+.+ ..+|++.++|+++..+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45679999999999999999986 567899998 666665421 2468999999998322
Q ss_pred -CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHH
Q 016366 285 -EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 362 (390)
Q Consensus 285 -~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~ 362 (390)
.. |+|+-..++|+++.+...++++++.++|+|||.++++....++.... . -....+.+++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~-----------------g-Pp~~~~~~el 175 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA-----------------G-PPFSVSDEEV 175 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC-----------------C-CCCCCCHHHH
Confidence 12 99999999999999999999999999999999866665554332100 0 0113579999
Q ss_pred HHHHHHCCCCeeEEEec
Q 016366 363 TELAIAAGFKGINFASC 379 (390)
Q Consensus 363 ~~ll~~aGf~~~~~~~~ 379 (390)
++++.. +|.+..+...
T Consensus 176 ~~~~~~-~~~i~~~~~~ 191 (218)
T PRK13255 176 EALYAG-CFEIELLERQ 191 (218)
T ss_pred HHHhcC-CceEEEeeec
Confidence 999953 3777665543
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-11 Score=107.11 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=80.8
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCC-CC-C--CCCC
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNM-FE-S--VPEG 286 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~-~~-~--~p~~ 286 (390)
+.+.+. .+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++++|+ .. + ++.+
T Consensus 33 ~~~~~~--~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~ 110 (202)
T PRK00121 33 WAELFG--NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDG 110 (202)
T ss_pred HHHHcC--CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCcc
Confidence 344444 2567999999999999999999999999999998 778887764 26799999999 43 3 4443
Q ss_pred --cEEEeccccccCCh------hHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 287 --DAILMKWILHCWDD------DHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 287 --D~i~~~~vlh~~~d------~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|+|++.....+... .....+|+++++.|+|||.+++...
T Consensus 111 ~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 111 SLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 99988765432221 1135789999999999999998643
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.4e-10 Score=101.59 Aligned_cols=132 Identities=11% Similarity=0.033 Sum_probs=92.1
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hH----HHhhCCCCCCceEEECCCCCCC-----CC-CcEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH----VVQDAPSYAGVEHVGGNMFESV-----PE-GDAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~----~~~~a~~~~rv~~~~gd~~~~~-----p~-~D~i~~~ 292 (390)
+.+..+|||+|||+|.++..++... +.-+++.+|+ +. +++.++.+++|.++.+|+..+. .. .|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5677899999999999999999976 4557888887 43 6677776789999999987532 22 3999887
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
.. .+| +...++.++++.|||||+++|.-.....+..+ ....+-.+|. ++|+++||+
T Consensus 210 va---~pd-q~~il~~na~r~LKpGG~~vI~ika~~id~g~-------------------~pe~~f~~ev-~~L~~~GF~ 265 (293)
T PTZ00146 210 VA---QPD-QARIVALNAQYFLKNGGHFIISIKANCIDSTA-------------------KPEVVFASEV-QKLKKEGLK 265 (293)
T ss_pred CC---Ccc-hHHHHHHHHHHhccCCCEEEEEEeccccccCC-------------------CHHHHHHHHH-HHHHHcCCc
Confidence 64 233 34466778999999999999842211111000 0000001334 889999999
Q ss_pred eeEEEecC
Q 016366 373 GINFASCV 380 (390)
Q Consensus 373 ~~~~~~~~ 380 (390)
+++...++
T Consensus 266 ~~e~v~L~ 273 (293)
T PTZ00146 266 PKEQLTLE 273 (293)
T ss_pred eEEEEecC
Confidence 99988876
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.4e-10 Score=96.53 Aligned_cols=134 Identities=22% Similarity=0.316 Sum_probs=95.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CC-ceEEECCCCCCCCC-C-cEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AG-VEHVGGNMFESVPE-G-DAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~r-v~~~~gd~~~~~p~-~-D~i~~~~v 294 (390)
.+..+|||+|||+|.++..++++ ..+++++|+ +.+++.+++. ++ +.++.+|+.+++++ . |+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45678999999999999999988 577888888 7787777542 22 88999999886554 3 99998765
Q ss_pred cccCC-------------------hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCc
Q 016366 295 LHCWD-------------------DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGR 355 (390)
Q Consensus 295 lh~~~-------------------d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~ 355 (390)
+.... ......+++++.++|+|||.+++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~---------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL---------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------------------
Confidence 43311 1224578999999999999988753211
Q ss_pred ccCHHHHHHHHHHCCCCeeEEEecC---CceeEEEEeC
Q 016366 356 ERTKKEYTELAIAAGFKGINFASCV---CNLYIMEFFK 390 (390)
Q Consensus 356 ~~t~~e~~~ll~~aGf~~~~~~~~~---~~~~vi~~~k 390 (390)
...+++.++++++||++..+.... ....+++.+|
T Consensus 152 -~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T PRK14968 152 -TGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188 (188)
T ss_pred -CCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence 124567889999999988765443 2333444443
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.3e-10 Score=102.79 Aligned_cols=135 Identities=20% Similarity=0.254 Sum_probs=97.7
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC-C-cEEEecccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G-DAILMKWIL 295 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~-~-D~i~~~~vl 295 (390)
..+..+|||+|||+|.++..++...|+.+++++|+ +.+++.++++ .+++++.+|++++.+. . |+|+++-..
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34567999999999999999999999999999998 7777776642 5799999999886553 3 999885322
Q ss_pred cc------CCh------------------hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhc
Q 016366 296 HC------WDD------------------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD 351 (390)
Q Consensus 296 h~------~~d------------------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 351 (390)
.. ..+ +...++++++.+.|+|||++++. . ..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e-~--g~---------------------- 240 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE-I--GY---------------------- 240 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE-E--Cc----------------------
Confidence 11 111 12357899999999999998871 1 00
Q ss_pred CCCcccCHHHHHHHHHHCCCCeeEEE-ecCCceeEEEEe
Q 016366 352 GGGRERTKKEYTELAIAAGFKGINFA-SCVCNLYIMEFF 389 (390)
Q Consensus 352 ~~g~~~t~~e~~~ll~~aGf~~~~~~-~~~~~~~vi~~~ 389 (390)
...+++++++++.||+.+++. ...+...++.++
T Consensus 241 -----~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 -----DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred -----hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 013458889999999876664 334555565554
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-09 Score=98.24 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=111.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCC--CeEEEecc-hHHHhhCCC------CCCc-eEEECCCCCC--C----CCCcEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPS------YAGV-EHVGGNMFES--V----PEGDAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~--~~~~~~Dl-~~~~~~a~~------~~rv-~~~~gd~~~~--~----p~~D~i 289 (390)
..+.+||||.||+|.+....+..+|. .++...|. +..++..++ ...+ +|.++|.++. + |..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999997 67888887 666666554 2444 9999999983 2 233999
Q ss_pred EeccccccCChhH-HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCC-----cccCHHHHH
Q 016366 290 LMKWILHCWDDDH-CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGG-----RERTKKEYT 363 (390)
Q Consensus 290 ~~~~vlh~~~d~~-~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g-----~~~t~~e~~ 363 (390)
+.+.++..|+|.+ +...|+.+++++.|||+++....-..+. . ..+......+ .+| +.||..|+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ-----l----e~IAr~LtsH-r~g~~WvMRrRsq~EmD 283 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ-----L----EMIARVLTSH-RDGKAWVMRRRSQAEMD 283 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc-----h----HHHHHHHhcc-cCCCceEEEecCHHHHH
Confidence 9999999999977 5557999999999999987644222111 1 0111111111 122 468999999
Q ss_pred HHHHHCCCCeeEEEec-CCceeEEEEeC
Q 016366 364 ELAIAAGFKGINFASC-VCNLYIMEFFK 390 (390)
Q Consensus 364 ~ll~~aGf~~~~~~~~-~~~~~vi~~~k 390 (390)
+++++|||+-++..-- -+-+.|..++|
T Consensus 284 ~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHcCCchhhheeccCCceEEEeecC
Confidence 9999999986654332 36666766654
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.6e-11 Score=103.65 Aligned_cols=99 Identities=15% Similarity=0.252 Sum_probs=76.3
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCC-C---CCCC--cEEEecc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-S---VPEG--DAILMKW 293 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~---~p~~--D~i~~~~ 293 (390)
...++||||||+|.++..+++++|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++.+ |.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999998 778777654 2589999999975 2 4443 8887765
Q ss_pred ccccCChhH------HHHHHHHHHHhCCCCcEEEEEec
Q 016366 294 ILHCWDDDH------CLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 294 vlh~~~d~~------~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
..++..... ...+++.++++|+|||.+++...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 443222110 14689999999999999988653
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.5e-10 Score=98.97 Aligned_cols=107 Identities=14% Similarity=0.189 Sum_probs=79.9
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecchHHHhhCCCCCCceEEECCCCCC---------CCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES---------VPE 285 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~---------~p~ 285 (390)
.++.+.+..+.+..+|||||||+|.++..++++. +..+++++|+..+. ..++++++++|+.++ ++.
T Consensus 40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 3455555534667899999999999999999986 45689999985532 236799999999873 333
Q ss_pred C--cEEEeccccccCChhH---------HHHHHHHHHHhCCCCcEEEEEecc
Q 016366 286 G--DAILMKWILHCWDDDH---------CLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 286 ~--D~i~~~~vlh~~~d~~---------~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
. |+|++....+...+.. ...+|+.+++.|+|||.+++....
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 2 9999977666544321 246899999999999999986543
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.4e-10 Score=94.11 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=81.8
Q ss_pred HHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCCC---CCCCcE
Q 016366 219 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFES---VPEGDA 288 (390)
Q Consensus 219 ~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~~---~p~~D~ 288 (390)
+..+. +.+..+++|||||+|+.+.+++...|..+++.+|. +++++..++ .++++++.||.-+- .+..|.
T Consensus 27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 45555 67889999999999999999999999999999997 667666554 38999999998763 333499
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|+....- . ...+|+.+...|+|||++++.-..
T Consensus 106 iFIGGg~-~-----i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 106 IFIGGGG-N-----IEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred EEECCCC-C-----HHHHHHHHHHHcCcCCeEEEEeec
Confidence 9988862 2 348999999999999998874443
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-10 Score=106.64 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=74.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCC---eEEEecc-hHHHhhCCCC-CCceEEECCCCC-CCCCC--cEEEeccccccC
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQI---KAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILMKWILHCW 298 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~---~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~ 298 (390)
...+|||||||+|.++..+++..|.. .++++|+ +.+++.|++. +++++..+|..+ |++.+ |+|++...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 45789999999999999999887753 6799998 8888888754 789999999988 77654 99987543
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 299 DDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+ ..+++++++|+|||+++++.+.
T Consensus 161 ~-----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 161 P-----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred C-----CCHHHHHhhccCCCEEEEEeCC
Confidence 1 2468899999999999987643
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-09 Score=98.24 Aligned_cols=109 Identities=21% Similarity=0.305 Sum_probs=87.4
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCCC-c
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG-D 287 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~~-D 287 (390)
+-+++.++ .....+|||+|||.|.++..+++.+|+.+++.+|. ...++-++++ .+..+...|.+++...- |
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd 226 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD 226 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence 35677777 44455999999999999999999999999999998 6677777763 23367788888866654 9
Q ss_pred EEEeccccccCC---hhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 288 AILMKWILHCWD---DDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 288 ~i~~~~vlh~~~---d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
.|+++=-+|.-- ..-..++++..++.|++||.|.|+-.
T Consensus 227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred EEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 999999998632 33355899999999999999998766
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6e-10 Score=99.43 Aligned_cols=99 Identities=15% Similarity=0.167 Sum_probs=76.1
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE- 285 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~- 285 (390)
..+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|+ +.+++.++++ .+++++.+|+.+.++.
T Consensus 62 ~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 62 AMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 34555555 55678999999999999999998764 557899998 7787776642 3589999999874432
Q ss_pred -C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 286 -G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 286 -~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
. |+|++...+++++ +++.+.|+|||++++.
T Consensus 141 ~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 141 APFDAIIVTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred CCccEEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 2 9999999887665 3567899999999874
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=101.44 Aligned_cols=96 Identities=23% Similarity=0.345 Sum_probs=75.6
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC-C-cEEEecc---
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMKW--- 293 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~-~-D~i~~~~--- 293 (390)
+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.++++ ++|+++.+|++++++. . |+|+++=
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457899999999999999999999999999998 7888877752 4799999999876654 3 9999851
Q ss_pred ---c-------cccCCh----------hHHHHHHHHHHHhCCCCcEEEE
Q 016366 294 ---I-------LHCWDD----------DHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 294 ---v-------lh~~~d----------~~~~~~L~~~~~~L~pgG~lli 322 (390)
. +++-|. ....++++.+.+.|+|||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1 121111 1236789999999999998775
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=100.05 Aligned_cols=121 Identities=18% Similarity=0.212 Sum_probs=85.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---C----CceEEECCCCCCCCCCcEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---A----GVEHVGGNMFESVPEGDAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~----rv~~~~gd~~~~~p~~D~i~~~~vlh~ 297 (390)
.+..+|||||||+|.++..+++..+ .+++++|+ +.+++.++++ . ++.+..+|. ..|+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~-- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA-- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH--
Confidence 4568999999999999988776544 36888888 7888877753 2 233333321 24999876432
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
+....+++++.+.|+|||++++...... ..+++.+.+++.||++.+..
T Consensus 190 ---~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 190 ---NPLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred ---HHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHHHHHCCCEEEEEE
Confidence 3345789999999999999998654311 24567889999999998887
Q ss_pred ecCCceeEE
Q 016366 378 SCVCNLYIM 386 (390)
Q Consensus 378 ~~~~~~~vi 386 (390)
....-.+++
T Consensus 238 ~~~~W~~~~ 246 (250)
T PRK00517 238 ERGEWVALV 246 (250)
T ss_pred EeCCEEEEE
Confidence 765544443
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.4e-10 Score=105.69 Aligned_cols=108 Identities=12% Similarity=0.251 Sum_probs=80.4
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCC---CCCCC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE---SVPEG 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~---~~p~~ 286 (390)
.+++.+. ......+||||||+|.++..+++++|+..++++|+ +.+++.+.+ .++|.++.+|+.. .++.+
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 3455554 33456899999999999999999999999999998 666665543 3689999999853 45554
Q ss_pred --cEEEeccccccCChhH-----HHHHHHHHHHhCCCCcEEEEEecc
Q 016366 287 --DAILMKWILHCWDDDH-----CLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~-----~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|.|++.+... |+... ...+|+.++++|+|||.+.+.+-.
T Consensus 192 s~D~I~lnFPdP-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 192 SVEKIFVHFPVP-WDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred ceeEEEEeCCCC-ccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 9988765432 22111 147899999999999999885543
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.5e-09 Score=101.68 Aligned_cols=133 Identities=17% Similarity=0.183 Sum_probs=94.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCC-C-C-cEEEeccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVP-E-G-DAILMKWILH 296 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p-~-~-D~i~~~~vlh 296 (390)
+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.++++ .+++++++|+++ ..+ . . |+|+++=-..
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 456999999999999999999999999999998 8888887753 479999999987 343 2 3 9999864321
Q ss_pred cCCh-----------------------hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCC
Q 016366 297 CWDD-----------------------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG 353 (390)
Q Consensus 297 ~~~d-----------------------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 353 (390)
.-.+ +-.+++++.+.+.|+|||.+++ |.-.+
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~~------------------------- 384 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGFD------------------------- 384 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECcc-------------------------
Confidence 1100 1134677788889999998664 22110
Q ss_pred CcccCHHHHHHHHHHCCCCeeEEEecC-CceeEEEEe
Q 016366 354 GRERTKKEYTELAIAAGFKGINFASCV-CNLYIMEFF 389 (390)
Q Consensus 354 g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~ 389 (390)
..+.+.+++++.||+.+++...- +...++.++
T Consensus 385 ----Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 385 ----QGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred ----HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 14567888899999887775543 545555443
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-09 Score=97.50 Aligned_cols=99 Identities=15% Similarity=0.201 Sum_probs=76.6
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCC-CCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV-PEG 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~-p~~ 286 (390)
..+++.+. ..+..+|||||||+|.++..+++.. ++.+++++|. +.+++.++++ .+++++.+|..+.. +.+
T Consensus 66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 45556665 6778899999999999999988875 4568899998 8888877652 57999999998733 333
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 287 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
|+|++....+..+ ..+.+.|+|||++++.
T Consensus 145 ~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 145 PYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcCEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence 9999887765443 3556789999998885
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=94.82 Aligned_cols=97 Identities=13% Similarity=0.211 Sum_probs=74.6
Q ss_pred HHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---CCC-C
Q 016366 220 EHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VPE-G 286 (390)
Q Consensus 220 ~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~p~-~ 286 (390)
..++ ..+..+|||+|||+|.++..+++.. +..+++++|+ +.+++.++++ ++++++.+|+.+. .+. .
T Consensus 34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 4444 6677899999999999999998764 6678999998 7788866532 5789999998762 222 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli 322 (390)
|+|++... ......+|+.+.+.|+|||++++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99987542 22345889999999999999886
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-09 Score=97.20 Aligned_cols=125 Identities=13% Similarity=0.153 Sum_probs=93.4
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCceEEECCCCC-CCCCC-cEEEeccccccCChhH
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAILMKWILHCWDDDH 302 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d~~ 302 (390)
...+|||+|||+|.++..++.+.+..+++++|+ +.+++.+++. ++++++.+|+++ ..+.. |+|+++-.+++.+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 346899999999999999999887789999998 8899888764 689999999988 33333 9999998888765432
Q ss_pred ------------------HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHH
Q 016366 303 ------------------CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 364 (390)
Q Consensus 303 ------------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ 364 (390)
..++++.....|+|+|.+++. .+..+ .+ ....+.++|++
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~---yss~~----------~y----------~~sl~~~~y~~ 200 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA---YSGRP----------YY----------DGTMKSNKYLK 200 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE---Eeccc----------cc----------cccCCHHHHHH
Confidence 135667778888888876665 22210 00 11236899999
Q ss_pred HHHHCCCCee
Q 016366 365 LAIAAGFKGI 374 (390)
Q Consensus 365 ll~~aGf~~~ 374 (390)
+++++||...
T Consensus 201 ~l~~~g~~~~ 210 (279)
T PHA03411 201 WSKQTGLVTY 210 (279)
T ss_pred HHHhcCcEec
Confidence 9999999653
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.8e-09 Score=90.22 Aligned_cols=149 Identities=13% Similarity=0.153 Sum_probs=95.2
Q ss_pred HHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCC
Q 016366 201 ETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMF 280 (390)
Q Consensus 201 ~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~ 280 (390)
..|.+.+..+.......+++.+...+....|.|+|||.+.++..+.. ..++.-+|+-+. +-.++..|+.
T Consensus 46 ~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~--------n~~Vtacdia 114 (219)
T PF05148_consen 46 EGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP--------NPRVTACDIA 114 (219)
T ss_dssp HHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S--------STTEEES-TT
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC--------CCCEEEecCc
Confidence 34555566666666777887776444567999999999999966542 346788886321 1235678987
Q ss_pred C-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCccc
Q 016366 281 E-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRER 357 (390)
Q Consensus 281 ~-~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~ 357 (390)
. |++.. |+++++-.|..- +...+|+++.|.|||||.|.|.|.... .-
T Consensus 115 ~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAEV~SR---------------------------f~ 164 (219)
T PF05148_consen 115 NVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIAEVKSR---------------------------FE 164 (219)
T ss_dssp S-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGGG----------------------------S
T ss_pred cCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEEEeccc---------------------------Cc
Confidence 7 88875 999888777542 245899999999999999999887521 11
Q ss_pred CHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 358 TKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 358 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
+.+++.+.+++.||+..........+.+.+.+|
T Consensus 165 ~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 165 NVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp -HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred CHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 467788899999999988766667777777654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-09 Score=100.02 Aligned_cols=94 Identities=19% Similarity=0.326 Sum_probs=75.7
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC-C-cEEEec------
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMK------ 292 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~-~-D~i~~~------ 292 (390)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.++++ .+++++.+|++++++. . |+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999998 7788777752 3599999999887664 3 999885
Q ss_pred -------cccccCCh----------hHHHHHHHHHHHhCCCCcEEEE
Q 016366 293 -------WILHCWDD----------DHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 293 -------~vlh~~~d----------~~~~~~L~~~~~~L~pgG~lli 322 (390)
.++++-|. ....++++++.+.|+|||++++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 23333221 1456899999999999998764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-09 Score=96.20 Aligned_cols=99 Identities=13% Similarity=0.135 Sum_probs=75.9
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCC--C
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP--E 285 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p--~ 285 (390)
..+++.+. ..+..+|||||||+|.++..+++..+ +.+++++|+ +.+++.++++ ++++++.+|+.+..+ .
T Consensus 67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 34555555 66788999999999999999999864 467888887 8888877652 579999999987333 2
Q ss_pred -CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 286 -GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 286 -~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.|+|++.....+. ...+.+.|+|||++++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 3999987765443 44567899999998874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.6e-09 Score=94.61 Aligned_cols=131 Identities=13% Similarity=0.164 Sum_probs=98.1
Q ss_pred HHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-C--CCCC-
Q 016366 219 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S--VPEG- 286 (390)
Q Consensus 219 ~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~--~p~~- 286 (390)
+..+.......+|||+|||+|..+..++++.++++++++++ +.+.+.|++. +||+++++|+.+ . .+..
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~ 115 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFAS 115 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccc
Confidence 33333245588999999999999999999999999999998 7788877763 789999999976 2 2222
Q ss_pred -cEEEeccccccCChh----------------HHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhh
Q 016366 287 -DAILMKWILHCWDDD----------------HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT 349 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~----------------~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 349 (390)
|+|+|+=-++.-.+. ...++++.+.+.|||||.+.++-...
T Consensus 116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---------------------- 173 (248)
T COG4123 116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---------------------- 173 (248)
T ss_pred cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH----------------------
Confidence 999998666543322 15678999999999999998854420
Q ss_pred hcCCCcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 350 RDGGGRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 350 ~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
...++.+++.+.+|...++..+
T Consensus 174 --------rl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 174 --------RLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred --------HHHHHHHHHHhcCCCceEEEEe
Confidence 1445677778878877766555
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.1e-09 Score=93.10 Aligned_cols=102 Identities=14% Similarity=0.089 Sum_probs=74.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCC-C-cEEEeccccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE-G-DAILMKWILH 296 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~-~-D~i~~~~vlh 296 (390)
..+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++ .+++++.+|+.+.++. . |+|+++--++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 4556799999999999999988763 347888998 7777766542 3578899999775543 3 9999874333
Q ss_pred cCCh-------------------hHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 297 CWDD-------------------DHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 297 ~~~d-------------------~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
..++ .....+++++.+.|+|||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 2111 113568899999999999999865543
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.8e-09 Score=94.45 Aligned_cols=101 Identities=17% Similarity=0.251 Sum_probs=77.2
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCC---CCC-C
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VPE-G 286 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~---~p~-~ 286 (390)
+++.++ ..+..+|||+|||+|.++..+++..|+.+++++|+ +.+++.++++ ++++++.+|+.+. +.. .
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 455554 56778999999999999999998888899999998 8888877642 5799999998652 222 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|.+++.. . ....++++++++.|+|||++++...
T Consensus 111 d~v~~~~-----~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG-----G-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CEEEEEC-----C-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 6654422 1 2245889999999999999998764
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-09 Score=100.15 Aligned_cols=94 Identities=20% Similarity=0.311 Sum_probs=75.1
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC-C-cEEEecc-----
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMKW----- 293 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~-~-D~i~~~~----- 293 (390)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.++++ ++|+++++|+++.++. . |+|+++=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999998 8888877652 4699999999876654 3 9999861
Q ss_pred --------ccccCCh----------hHHHHHHHHHHHhCCCCcEEEE
Q 016366 294 --------ILHCWDD----------DHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 294 --------vlh~~~d----------~~~~~~L~~~~~~L~pgG~lli 322 (390)
.+++.|. +....+++++.+.|+|||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122221 2246889999999999999876
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-09 Score=98.26 Aligned_cols=97 Identities=19% Similarity=0.296 Sum_probs=76.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC---CCCCC-cEEEecc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVPEG-DAILMKW 293 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~---~~p~~-D~i~~~~ 293 (390)
+++.+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++. ++++++.+|+.+ ..+.. |+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3567999999999999999999999999999999 8899887752 679999999865 23333 9998753
Q ss_pred cccc--CChh-HHHHHHHHHHHhCCCCcEEEEE
Q 016366 294 ILHC--WDDD-HCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 294 vlh~--~~d~-~~~~~L~~~~~~L~pgG~lli~ 323 (390)
++. .+.. ....+++++++.|+|||++++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 221 1211 1258999999999999998874
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-08 Score=96.26 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=69.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCC-cEEEecccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG-DAILMKWILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~-D~i~~~~vlh~ 297 (390)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ .++.+..++.....+.. |+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 4589999999999999887765 4457888898 7788877753 34666666643322333 999986543
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+....++.++++.|+|||+++++...
T Consensus 236 ---~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 236 ---EVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred ---HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 23458899999999999999987654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=102.67 Aligned_cols=130 Identities=15% Similarity=0.225 Sum_probs=93.2
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC-C-cEEEeccc---
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMKWI--- 294 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~-~-D~i~~~~v--- 294 (390)
..+|||+|||+|.++..++.++|+.+++++|+ +.+++.++++ ++++++.+|+++.++. . |+|+++--
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999998 7788877752 4799999999875554 3 99998421
Q ss_pred -----------cccCCh----------hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCC
Q 016366 295 -----------LHCWDD----------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG 353 (390)
Q Consensus 295 -----------lh~~~d----------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 353 (390)
..+-|. +...++++++.+.|+|||.+++ +.-. +
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~-~------------------------ 272 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF-K------------------------ 272 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC-c------------------------
Confidence 111111 1245678899999999999875 3210 0
Q ss_pred CcccCHHHHHHHHHHCCCCeeEEEec-CCceeEEE
Q 016366 354 GRERTKKEYTELAIAAGFKGINFASC-VCNLYIME 387 (390)
Q Consensus 354 g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~ 387 (390)
..+.+.+++++.||+.+++..- .+...++.
T Consensus 273 ----q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~ 303 (506)
T PRK01544 273 ----QEEAVTQIFLDHGYNIESVYKDLQGHSRVIL 303 (506)
T ss_pred ----hHHHHHHHHHhcCCCceEEEecCCCCceEEE
Confidence 1445677888889987776544 34444443
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.7e-09 Score=80.28 Aligned_cols=92 Identities=24% Similarity=0.329 Sum_probs=74.2
Q ss_pred eEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCC------CCCCceEEECCCCCCC---CCC-cEEEeccccccC
Q 016366 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP------SYAGVEHVGGNMFESV---PEG-DAILMKWILHCW 298 (390)
Q Consensus 230 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~------~~~rv~~~~gd~~~~~---p~~-D~i~~~~vlh~~ 298 (390)
+++|+|||.|.++..+++ .+..+++++|+ +..++.++ ...+++++.+|+.+.. +.. |+|++...++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999998 66788999997 55555444 1367899999998832 233 999999999885
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 299 DDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.+....+++++.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 445669999999999999998875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.93 E-value=9e-09 Score=90.59 Aligned_cols=103 Identities=15% Similarity=0.252 Sum_probs=74.7
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecchHHHhhCCCCCCceEEECCCCC-C--------CCC-C
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-S--------VPE-G 286 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~-~--------~p~-~ 286 (390)
+.+.+....++.+|||+|||+|.++..+++++ +..+++++|+..+. ..++++++++|+.+ + .+. .
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 44445445678899999999999999999887 56789999984432 34678999999876 2 233 3
Q ss_pred -cEEEeccccc---cCC------hhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 287 -DAILMKWILH---CWD------DDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 287 -D~i~~~~vlh---~~~------d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
|+|++....| .|. .+...++|+++++.|+|||++++..
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9999854322 111 1123589999999999999999853
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-08 Score=96.02 Aligned_cols=127 Identities=15% Similarity=0.033 Sum_probs=89.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC--
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG-- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~-- 286 (390)
.++.... ++++.+|||+|||+|.++.+.+.. ..+++++|+ +.+++.++.+ +++++..+|+.+ +.+..
T Consensus 173 ~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 173 AMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHHhC-CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCC
Confidence 3343333 567789999999999999887654 567888888 7787766542 448899999988 66543
Q ss_pred cEEEecccccc-------CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCH
Q 016366 287 DAILMKWILHC-------WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTK 359 (390)
Q Consensus 287 D~i~~~~vlh~-------~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~ 359 (390)
|+|++.--+.. ...+...++|+.+++.|+|||++++..+..
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~-------------------------------- 297 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR-------------------------------- 297 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--------------------------------
Confidence 99998632211 112335689999999999999998754321
Q ss_pred HHHHHHHHHCCCCeeEEEec
Q 016366 360 KEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 360 ~e~~~ll~~aGf~~~~~~~~ 379 (390)
.+|.++++++|| ++..+..
T Consensus 298 ~~~~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 298 IDLESLAEDAFR-VVKRFEV 316 (329)
T ss_pred CCHHHHHhhcCc-chheeee
Confidence 124567888999 7776665
|
This family is found exclusively in the Archaea. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-09 Score=87.48 Aligned_cols=95 Identities=21% Similarity=0.305 Sum_probs=75.2
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCC-C--CCCC--cEEEecccc
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE-S--VPEG--DAILMKWIL 295 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~-~--~p~~--D~i~~~~vl 295 (390)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. .++++++++|+.+ . .+.. |+|+++-.+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 788888888 777777664 2679999999987 3 4443 999998777
Q ss_pred ccCC------hhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 296 HCWD------DDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 296 h~~~------d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+... .+....+++++.+.|+|||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 6432 1234688999999999999998864
|
... |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.2e-08 Score=90.20 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=73.9
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCCCCC----CC-cEEEeccccc-
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFESVP----EG-DAILMKWILH- 296 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~~~p----~~-D~i~~~~vlh- 296 (390)
...++||+|||+|.++..+++..|..+++++|+ +.+++.++++ .+++++++|+++.++ .. |+|+++=-..
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 345899999999999999999999889999998 8888887753 347899999987443 23 9998874321
Q ss_pred -----cCChh------------------HHHHHHHHHHHhCCCCcEEEEE
Q 016366 297 -----CWDDD------------------HCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 297 -----~~~d~------------------~~~~~L~~~~~~L~pgG~lli~ 323 (390)
..+++ -..++++.+.+.|+|||++++.
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11111 1347888899999999998864
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5e-08 Score=86.73 Aligned_cols=156 Identities=16% Similarity=0.179 Sum_probs=106.3
Q ss_pred hcccCchHHHHHHHHHhhccH----HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCC
Q 016366 192 YASGNPRFNETYHEAMFNHST----IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAP 267 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~m~~~~~----~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~ 267 (390)
....+|+....|.+....... ..+..+++.+..-+....|.|+|||.+.++. . ..-.+..+|+-.
T Consensus 141 lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~--~~~kV~SfDL~a------ 209 (325)
T KOG3045|consen 141 LFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---S--ERHKVHSFDLVA------ 209 (325)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh---c--cccceeeeeeec------
Confidence 344677777777666544333 3455666666534566789999999998876 1 123467777632
Q ss_pred CCCCceEEECCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhh
Q 016366 268 SYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLD 344 (390)
Q Consensus 268 ~~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d 344 (390)
.+-+++..|+.+ |+++. |+++++-.|.. . +...++++++|.|+|||.+.|.|...
T Consensus 210 --~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-t--n~~df~kEa~RiLk~gG~l~IAEv~S----------------- 267 (325)
T KOG3045|consen 210 --VNERVIACDMRNVPLEDESVDVAVFCLSLMG-T--NLADFIKEANRILKPGGLLYIAEVKS----------------- 267 (325)
T ss_pred --CCCceeeccccCCcCccCcccEEEeeHhhhc-c--cHHHHHHHHHHHhccCceEEEEehhh-----------------
Confidence 233566788888 77764 99888776643 2 35589999999999999999987641
Q ss_pred hhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 345 VLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 345 ~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
+..+...+.+.|.+.||.+........++.+.+..|
T Consensus 268 ----------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 268 ----------RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred ----------hcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 111344478888999999877766666766666543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4e-09 Score=92.10 Aligned_cols=162 Identities=13% Similarity=0.172 Sum_probs=107.2
Q ss_pred HHHHHHHHhhccHHH----HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCce-
Q 016366 200 NETYHEAMFNHSTIA----MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVE- 273 (390)
Q Consensus 200 ~~~~~~~m~~~~~~~----~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~- 273 (390)
...|.......-.+. ..+.+...+ ..+..++||+|||||.+...+...-.+ .+++|+ ..|++.|.+.+-..
T Consensus 95 Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~--ltGvDiS~nMl~kA~eKg~YD~ 171 (287)
T COG4976 95 AERFDHILVDKLGYSVPELLAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADR--LTGVDISENMLAKAHEKGLYDT 171 (287)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHhcc-CCccceeeecccCcCcccHhHHHHHhh--ccCCchhHHHHHHHHhccchHH
Confidence 445555544322222 233444444 445889999999999999998877554 467777 88999998753221
Q ss_pred EEECC---CCCCCC-C-CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhh
Q 016366 274 HVGGN---MFESVP-E-GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM 348 (390)
Q Consensus 274 ~~~gd---~~~~~p-~-~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 348 (390)
+.++| |..+.. + .|+|+...||-++.+-+ .++.-+...|+|||.+.++-...+++..- .....
T Consensus 172 L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le--~~~~~aa~~L~~gGlfaFSvE~l~~~~~f-------~l~ps--- 239 (287)
T COG4976 172 LYVAEAVLFLEDLTQERFDLIVAADVLPYLGALE--GLFAGAAGLLAPGGLFAFSVETLPDDGGF-------VLGPS--- 239 (287)
T ss_pred HHHHHHHHHhhhccCCcccchhhhhHHHhhcchh--hHHHHHHHhcCCCceEEEEecccCCCCCe-------ecchh---
Confidence 11221 332222 2 39999999999998766 88999999999999999977766553110 00000
Q ss_pred hhcCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 349 TRDGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 349 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
.....+..-++.+++..||+++++.++.
T Consensus 240 ----~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 240 ----QRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred ----hhhccchHHHHHHHHhcCceEEEeeccc
Confidence 0112346667899999999999987764
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=4e-08 Score=88.09 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=82.8
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------------------CCCceEEECCCCC-CCCC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFE-SVPE 285 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------------------~~rv~~~~gd~~~-~~p~ 285 (390)
.+..+||+.|||.|.-+..|++.. .+++++|+ +..++.+.+ ..+|++.++|+++ +.+.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 455799999999999999999874 46888898 666666421 2479999999998 4221
Q ss_pred ----C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 286 ----G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 286 ----~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
. |+|+=..+|+.++++...+..+++.+.|+|||.++++....
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 2 99999999999999999999999999999999999887643
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=89.99 Aligned_cols=131 Identities=19% Similarity=0.229 Sum_probs=97.7
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------------------CCCceEEECCCCC-CCC
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFE-SVP 284 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------------------~~rv~~~~gd~~~-~~p 284 (390)
.....+||..|||.|.-+..|+++. .+++++|+ +..++.+.+ ..+|++.++|+++ +..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 4567899999999999999999874 57899998 667766511 1468999999998 332
Q ss_pred C--C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCc--ccCH
Q 016366 285 E--G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGR--ERTK 359 (390)
Q Consensus 285 ~--~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~--~~t~ 359 (390)
. . |+|+=...|+.++++...+..+++.+.|+|||.++++....+.... .|. ..+.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~--------------------~GPPf~v~~ 172 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM--------------------EGPPFSVTE 172 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS--------------------SSSS----H
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC--------------------CCcCCCCCH
Confidence 2 2 9999999999999999999999999999999996665554433210 111 2368
Q ss_pred HHHHHHHHHCCCCeeEEEe
Q 016366 360 KEYTELAIAAGFKGINFAS 378 (390)
Q Consensus 360 ~e~~~ll~~aGf~~~~~~~ 378 (390)
+++++++. .+|++..+..
T Consensus 173 ~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 173 EEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHhc-CCcEEEEEec
Confidence 99999998 7898877654
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=89.53 Aligned_cols=98 Identities=16% Similarity=0.235 Sum_probs=69.3
Q ss_pred CcceEEEEcCCccH--HHHH--HHhh----CC-CCeEEEecc-hHHHhhCCCC---------------------------
Q 016366 227 NVERLVDVGGGFGV--TLSM--ITSK----YP-QIKAVNFDL-PHVVQDAPSY--------------------------- 269 (390)
Q Consensus 227 ~~~~iLDiG~G~G~--~~~~--l~~~----~p-~~~~~~~Dl-~~~~~~a~~~--------------------------- 269 (390)
+..+|...||++|. ++.+ +.+. .+ ++++++.|+ +.+++.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56799999999993 3333 3331 12 467888888 8888887750
Q ss_pred -------CCceEEECCCCC-CCCC-C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 270 -------AGVEHVGGNMFE-SVPE-G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 270 -------~rv~~~~gd~~~-~~p~-~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.+|+|...|..+ +.+. . |+|+|.|||-+++++...+++++++++|+|||.|++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 469999999998 3333 3 99999999999999999999999999999999999844
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=95.34 Aligned_cols=98 Identities=23% Similarity=0.277 Sum_probs=74.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-----------CCCceEEECCCCCCC--CC-C-cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESV--PE-G-DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------~~rv~~~~gd~~~~~--p~-~-D~i 289 (390)
+++.+||+||||+|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|..+-+ +. . |+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4568999999999999999997655567888888 888887765 268999999987622 22 3 999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 016366 290 LMKWILHCWDDDH--CLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 290 ~~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~ 323 (390)
++...-+..+... ...+++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9865433322221 257899999999999998863
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.8e-08 Score=87.85 Aligned_cols=144 Identities=20% Similarity=0.265 Sum_probs=95.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCCCCCCC-cEEEeccccccCChhHHHH
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEG-DAILMKWILHCWDDDHCLR 305 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~~~~ 305 (390)
...++||||+|.|..+..++..+.++.+|... +.|..+.+++ +++++..|-...-+.. |+|.|.|+|-...++. .
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S-~~Mr~rL~~k-g~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~--~ 169 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEAS-PPMRWRLSKK-GFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPL--T 169 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCC-HHHHHHHHhC-CCeEEehhhhhccCCceEEEeehhhhhccCCHH--H
Confidence 45789999999999999999999887777666 7787776653 3555544333322323 9999999998888776 8
Q ss_pred HHHHHHHhCCCCcEEEEEecccCCCCCcch----HHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 306 ILKNCYKAVPGNGKVIVMNSIVPEIPEVSS----AARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 306 ~L~~~~~~L~pgG~lli~e~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
+|+.++++|+|+|++++.--. |-.+-... ..+....+++ .+...+-....+.+.|+.+||++++....|
T Consensus 170 LL~~i~~~l~p~G~lilAvVl-P~~pyVE~~~g~~~~P~e~l~~-----~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAVVL-PFRPYVEFGGGKSNRPSELLPV-----KGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHhCCCCEEEEEEEe-cccccEEcCCCCCCCchhhcCC-----CCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 999999999999998864322 21110000 0000011111 111111123444588999999999998876
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-08 Score=88.79 Aligned_cols=98 Identities=15% Similarity=0.214 Sum_probs=73.0
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC---C
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE---G 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~---~ 286 (390)
.++..+. ..+..+|||||||+|.++..+++... +++++|. +.+++.++++ .+++++.+|+.+.++. .
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 4444455 56778999999999999987777653 6777776 7777766642 4699999998774442 2
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|+|++...++++ .+.+.+.|+|||++++.-.
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 999998766544 3456789999999887543
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-08 Score=85.19 Aligned_cols=124 Identities=19% Similarity=0.186 Sum_probs=88.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CC-CceEEECCCCCC-CC-CC-cEEEecccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YA-GVEHVGGNMFES-VP-EG-DAILMKWIL 295 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~-rv~~~~gd~~~~-~p-~~-D~i~~~~vl 295 (390)
...+|||+|||+|.++..|++..-.-..+++|- +..++.|+. .+ .|+|.+.|+.+| +- .. |+|+=..++
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 344999999999999999999653334566664 666655443 23 499999999984 33 33 887655554
Q ss_pred ccC------ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHC
Q 016366 296 HCW------DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA 369 (390)
Q Consensus 296 h~~------~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~a 369 (390)
... ++......+..+.+.|+|||+++|.. + -+|.+|+.+.++.-
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS-C-----------------------------N~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS-C-----------------------------NFTKDELVEEFENF 196 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEe-c-----------------------------CccHHHHHHHHhcC
Confidence 332 23333467889999999999988721 1 13688899999999
Q ss_pred CCCeeEEEecC
Q 016366 370 GFKGINFASCV 380 (390)
Q Consensus 370 Gf~~~~~~~~~ 380 (390)
||......|.+
T Consensus 197 ~f~~~~tvp~p 207 (227)
T KOG1271|consen 197 NFEYLSTVPTP 207 (227)
T ss_pred CeEEEEeeccc
Confidence 99988877776
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.82 E-value=4e-08 Score=89.33 Aligned_cols=151 Identities=20% Similarity=0.289 Sum_probs=87.2
Q ss_pred HHHHHhhccCCcceEEEEcCCcc--HHHHHHHh-hCCCCeEEEecc-hHHHhhCCC----CCC--ceEEECCCCCC---C
Q 016366 217 RILEHYEGFQNVERLVDVGGGFG--VTLSMITS-KYPQIKAVNFDL-PHVVQDAPS----YAG--VEHVGGNMFES---V 283 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G--~~~~~l~~-~~p~~~~~~~Dl-~~~~~~a~~----~~r--v~~~~gd~~~~---~ 283 (390)
..+..+-.-.+...+||||||-= ...-++++ ..|+.+++.+|. |-++.+++. .++ ..++.+|+.++ +
T Consensus 58 RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL 137 (267)
T PF04672_consen 58 RAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAIL 137 (267)
T ss_dssp HHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHH
T ss_pred HHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHh
Confidence 33444431226789999999933 34445554 679999999998 888888875 245 88999999873 2
Q ss_pred C--C--C-------cEEEeccccccCCh-hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhc
Q 016366 284 P--E--G-------DAILMKWILHCWDD-DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD 351 (390)
Q Consensus 284 p--~--~-------D~i~~~~vlh~~~d-~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 351 (390)
. . + =.+++..+||+.+| ++...+++.++++|.||++|+|+..+.+..+ ..... ....... ..
T Consensus 138 ~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p--~~~~~---~~~~~~~-~~ 211 (267)
T PF04672_consen 138 AHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP--ERAEA---LEAVYAQ-AG 211 (267)
T ss_dssp CSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH--HHHHH---HHHHHHH-CC
T ss_pred cCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH--HHHHH---HHHHHHc-CC
Confidence 2 1 1 37899999999987 7788999999999999999999888754432 11111 1111111 12
Q ss_pred CCCcccCHHHHHHHHHHCCCCeeE
Q 016366 352 GGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 352 ~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
.....||.+|+.++|. ||.+++
T Consensus 212 ~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 212 SPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp S----B-HHHHHHCCT--TSEE-T
T ss_pred CCceecCHHHHHHHcC--CCccCC
Confidence 2567899999999995 888764
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.2e-07 Score=86.62 Aligned_cols=127 Identities=19% Similarity=0.254 Sum_probs=90.5
Q ss_pred eEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCCC-cEEEec--ccccc--
Q 016366 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG-DAILMK--WILHC-- 297 (390)
Q Consensus 230 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~~-D~i~~~--~vlh~-- 297 (390)
+|||+|||+|..+..++.++|+.+++++|+ +.+++.|+++ .++.++.+|.+++++.. |+|+++ ++=..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999998 8888877753 45667777988876655 999876 22111
Q ss_pred -C-C-----------------hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccC
Q 016366 298 -W-D-----------------DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERT 358 (390)
Q Consensus 298 -~-~-----------------d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t 358 (390)
. + -+...+++..+.+.|+|||.+++ +.-.. .
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~~-----------------------------q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGLT-----------------------------Q 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECCC-----------------------------c
Confidence 0 0 11356788889999999887665 22110 1
Q ss_pred HHHHHHHHHHCC-CCeeEEEecC-CceeEE
Q 016366 359 KKEYTELAIAAG-FKGINFASCV-CNLYIM 386 (390)
Q Consensus 359 ~~e~~~ll~~aG-f~~~~~~~~~-~~~~vi 386 (390)
.+.+.+++.+.| |..+...... +...++
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~ 272 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDLFGRDRVV 272 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecCCCceEEE
Confidence 566788999999 6655555444 333333
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1e-07 Score=85.28 Aligned_cols=106 Identities=19% Similarity=0.281 Sum_probs=86.9
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHh-hCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC-CC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITS-KYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES-VP 284 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~-~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~-~p 284 (390)
+..|+.... ..++.+|+|.|.|+|.++..|+. ..|.-+++.+|. ++..+.|+++ ++|++..+|+.+. .+
T Consensus 83 ~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 83 AGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 345666666 88999999999999999999997 668789999997 7777777763 5699999999883 44
Q ss_pred CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 285 EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 285 ~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
.. |+|++ ++|+++ .+|.++.++|+|||.+++..++.+
T Consensus 162 ~~vDav~L-----Dmp~PW--~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 162 EDVDAVFL-----DLPDPW--NVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred cccCEEEE-----cCCChH--HHHHHHHHHhCCCcEEEEEcCCHH
Confidence 44 88765 678888 889999999999999999877753
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.9e-08 Score=93.40 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=74.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------------CCCceEEECCCCCCC---CCC-c
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------------YAGVEHVGGNMFESV---PEG-D 287 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------------~~rv~~~~gd~~~~~---p~~-D 287 (390)
.++.+||+||||.|..+.++++..+..+++.+|+ +.|++.|++ .+|++++.+|..+-+ +.. |
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4678999999999999999987655567888888 888888874 268999999998622 222 9
Q ss_pred EEEeccccc---cCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 288 AILMKWILH---CWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 288 ~i~~~~vlh---~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
+|++...-. .........+++.+++.|+|||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999874211 111222357899999999999998775
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.8e-08 Score=91.04 Aligned_cols=98 Identities=20% Similarity=0.204 Sum_probs=72.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----------CCceEEECCCCC---CCCC--CcEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFE---SVPE--GDAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----------~rv~~~~gd~~~---~~p~--~D~i 289 (390)
+++.+||+||||.|..+.++++..+..+++.+|+ +.+++.++++ +|++++.+|..+ ..+. .|+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4678999999999999999986533356788887 7788877652 589999999854 2333 3999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhCCCCcEEEEE
Q 016366 290 LMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 290 ~~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~ 323 (390)
++...-+..+.. -...+++.+++.|+|||.+++.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 886543332221 1357899999999999998753
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.4e-08 Score=85.79 Aligned_cols=142 Identities=15% Similarity=0.221 Sum_probs=91.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----------C----------------------
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------A---------------------- 270 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----------~---------------------- 270 (390)
+-.+..+|||||.+|.++..+++.+....++++|+ +..++.|++. .
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 55678899999999999999999998888999998 7777777752 0
Q ss_pred --------CceE-------EECCCCC-CCCCCcEEEeccccc----cCChhHHHHHHHHHHHhCCCCcEEEEEecccCCC
Q 016366 271 --------GVEH-------VGGNMFE-SVPEGDAILMKWILH----CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI 330 (390)
Q Consensus 271 --------rv~~-------~~gd~~~-~~p~~D~i~~~~vlh----~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 330 (390)
++.| ...||.+ ..+..|+|+|-++-- +|.|+-..++|+++++.|.|||+|+ +|+..
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv-vEPQp--- 211 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV-VEPQP--- 211 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE-EcCCc---
Confidence 1112 2223332 233348997765532 4678899999999999999999866 45431
Q ss_pred CCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHC--CCCee
Q 016366 331 PEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA--GFKGI 374 (390)
Q Consensus 331 ~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~a--Gf~~~ 374 (390)
..... ........ +....-.-...++.+..++.+. ||+-+
T Consensus 212 -WksY~-kaar~~e~--~~~ny~~i~lkp~~f~~~l~q~~vgle~~ 253 (288)
T KOG2899|consen 212 -WKSYK-KAARRSEK--LAANYFKIFLKPEDFEDWLNQIVVGLESV 253 (288)
T ss_pred -hHHHH-HHHHHHHH--hhcCccceecCHHHHHhhhhhhhhheeee
Confidence 11110 11111111 1111122345688899999887 55443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=96.49 Aligned_cols=98 Identities=20% Similarity=0.304 Sum_probs=74.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCC-------------CCceEEECCCCCC---CCCC-
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-------------AGVEHVGGNMFES---VPEG- 286 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~-------------~rv~~~~gd~~~~---~p~~- 286 (390)
+++.+|||||||+|..+.++++ +|. .+++.+|+ +++++.++++ +|++++.+|.++. .++.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4678999999999999999987 455 68888888 8899988761 6899999998762 2333
Q ss_pred cEEEeccccccCChh---HHHHHHHHHHHhCCCCcEEEEEe
Q 016366 287 DAILMKWILHCWDDD---HCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 287 D~i~~~~vlh~~~d~---~~~~~L~~~~~~L~pgG~lli~e 324 (390)
|+|++...-...+.. -..++++++++.|+|||.+++..
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999987543322211 12368999999999999988743
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.5e-07 Score=85.68 Aligned_cols=127 Identities=21% Similarity=0.263 Sum_probs=86.4
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCce----EEECCCCCCCC--CCc
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVE----HVGGNMFESVP--EGD 287 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~----~~~gd~~~~~p--~~D 287 (390)
+++.+. .++.++||+|||+|.++++.++-.. .+++++|+ |..++.++++ ++|. ....+..+... ..|
T Consensus 155 ~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~D 231 (300)
T COG2264 155 ALEKLL--KKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFD 231 (300)
T ss_pred HHHHhh--cCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCccc
Confidence 344443 4778999999999999999888653 45677776 7777777753 3444 22223222112 239
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHH
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 367 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~ 367 (390)
+|+++= | .+ -...+...+++.++|||+++++-.+. + ..+.+.+.++
T Consensus 232 vIVANI-L---A~-vl~~La~~~~~~lkpgg~lIlSGIl~-~----------------------------q~~~V~~a~~ 277 (300)
T COG2264 232 VIVANI-L---AE-VLVELAPDIKRLLKPGGRLILSGILE-D----------------------------QAESVAEAYE 277 (300)
T ss_pred EEEehh-h---HH-HHHHHHHHHHHHcCCCceEEEEeehH-h----------------------------HHHHHHHHHH
Confidence 988654 3 22 24589999999999999998865431 1 1455678888
Q ss_pred HCCCCeeEEEecCC
Q 016366 368 AAGFKGINFASCVC 381 (390)
Q Consensus 368 ~aGf~~~~~~~~~~ 381 (390)
++||.++++.....
T Consensus 278 ~~gf~v~~~~~~~e 291 (300)
T COG2264 278 QAGFEVVEVLEREE 291 (300)
T ss_pred hCCCeEeEEEecCC
Confidence 99999988876643
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=7e-08 Score=85.26 Aligned_cols=90 Identities=23% Similarity=0.350 Sum_probs=66.5
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEEC-------CCCCCC--CCC-cEEEecccccc
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGG-------NMFESV--PEG-DAILMKWILHC 297 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~g-------d~~~~~--p~~-D~i~~~~vlh~ 297 (390)
..++|||||+|..++.++..+.+ +++.|. +.|++.+++.++++.... ++.+-. ++. |+|++..++|+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 38999999999888888887765 466676 899999998776554332 222211 223 99999999998
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
|+-+ ++.+.++++||++|.++.+
T Consensus 113 Fdle---~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 113 FDLE---RFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred hchH---HHHHHHHHHcCCCCCEEEE
Confidence 8643 7899999999987744433
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-07 Score=90.30 Aligned_cols=99 Identities=20% Similarity=0.290 Sum_probs=73.5
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCC------CCCceEEECCCCCCCCC---
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFESVPE--- 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~~~p~--- 285 (390)
.+++.++ .++..+|||||||+|.++..+++..+. .+++++|. +.+++.+++ .+++.++.+|..+..+.
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 4455554 566789999999999999999998764 46788887 778777664 25799999998763332
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 286 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 286 ~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.|+|++...+++. ...+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 3999988665543 234567899999988854
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.1e-08 Score=89.01 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=76.5
Q ss_pred CcceEEEEcCCccH--HHHH--HHhhCC----CCeEEEecc-hHHHhhCCCC----------------------------
Q 016366 227 NVERLVDVGGGFGV--TLSM--ITSKYP----QIKAVNFDL-PHVVQDAPSY---------------------------- 269 (390)
Q Consensus 227 ~~~~iLDiG~G~G~--~~~~--l~~~~p----~~~~~~~Dl-~~~~~~a~~~---------------------------- 269 (390)
+..+|...||++|. ++.+ +.+..+ ++++++.|+ +.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34799999999993 4444 334332 467888888 7777776640
Q ss_pred ---------CCceEEECCCCC-CCC--CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 270 ---------AGVEHVGGNMFE-SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 270 ---------~rv~~~~gd~~~-~~p--~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.+|+|...|..+ ++| .. |+|+|.+++.+++++...+++++++++|+|||+|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 347899999988 554 33 99999999999999999999999999999999988743
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.3e-07 Score=84.22 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=80.3
Q ss_pred CcceEEEEcCCcc----HHHHHHHhhCC-----CCeEEEecc-hHHHhhCCCC---------------------------
Q 016366 227 NVERLVDVGGGFG----VTLSMITSKYP-----QIKAVNFDL-PHVVQDAPSY--------------------------- 269 (390)
Q Consensus 227 ~~~~iLDiG~G~G----~~~~~l~~~~p-----~~~~~~~Dl-~~~~~~a~~~--------------------------- 269 (390)
+.-+|.-.||++| +++..+.+..| ++++++.|+ ..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4789999999999 45555666665 477888887 7788887740
Q ss_pred --------CCceEEECCCCC-C-CCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 270 --------AGVEHVGGNMFE-S-VPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 270 --------~rv~~~~gd~~~-~-~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
..|.|...|..+ + .+.. |+|+|.|||-+++.+...+++++.+..|+|||.|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 248899999988 4 4444 99999999999999999999999999999999999843
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-07 Score=86.72 Aligned_cols=121 Identities=21% Similarity=0.223 Sum_probs=82.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCC--cEEEecccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG--DAILMKWIL 295 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~--D~i~~~~vl 295 (390)
.++.+|||||||+|.+++..++... -+++++|+ |..++.++++ +++.+. . ..+.+.. |+|+.+-..
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFDLVVANILA 235 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EEEEEEES-H
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCCEEEECCCH
Confidence 4567999999999999999888653 46778887 7777777753 344432 1 1233333 998855432
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
+-...+...+.+.|+|||+++++-.... ..+++.+.+++ ||++.+
T Consensus 236 -----~vL~~l~~~~~~~l~~~G~lIlSGIl~~-----------------------------~~~~v~~a~~~-g~~~~~ 280 (295)
T PF06325_consen 236 -----DVLLELAPDIASLLKPGGYLILSGILEE-----------------------------QEDEVIEAYKQ-GFELVE 280 (295)
T ss_dssp -----HHHHHHHHHCHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHT-TEEEEE
T ss_pred -----HHHHHHHHHHHHhhCCCCEEEEccccHH-----------------------------HHHHHHHHHHC-CCEEEE
Confidence 3356788889999999999998665521 14556777876 999988
Q ss_pred EEecCCceeE
Q 016366 376 FASCVCNLYI 385 (390)
Q Consensus 376 ~~~~~~~~~v 385 (390)
......=.++
T Consensus 281 ~~~~~~W~~l 290 (295)
T PF06325_consen 281 EREEGEWVAL 290 (295)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCEEEE
Confidence 8766543333
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-07 Score=88.45 Aligned_cols=98 Identities=17% Similarity=0.165 Sum_probs=73.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCC---CCCC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~---~p~~-D~i~ 290 (390)
+++.+||+||||+|.++..+++..+..+++.+|+ +.+++.+++ .++++++.+|..+- .+.. |+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3556999999999999999988765667888887 777776664 25788999888652 2233 9999
Q ss_pred eccccccCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 016366 291 MKWILHCWDDDH--CLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 291 ~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~ 323 (390)
+...-...+... ...+++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 876533322222 358899999999999998875
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.9e-07 Score=83.77 Aligned_cols=97 Identities=12% Similarity=0.211 Sum_probs=74.1
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCC--------CCC-
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV--------PEG- 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~--------p~~- 286 (390)
..++++|||||||+|..+..+++..+ +.+++.+|. +++++.|+++ ++|+++.+|+.+.+ ...
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45688999999999999999998764 678999998 7777777652 57999999997621 122
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|+|++.. ..+.-..++..+.+.|+|||.+++-+..
T Consensus 146 D~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 146 DFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 9987743 2344558899999999999986654443
|
|
| >PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-08 Score=67.02 Aligned_cols=49 Identities=55% Similarity=0.792 Sum_probs=40.8
Q ss_pred HHHHHHHHhChhHHHhhcC--CCCHHHHHHHhccCCCCCCCcHHHHHHHHh
Q 016366 39 MATQAAIQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g--~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~ 87 (390)
++|++|++|||||.|+++| +.|++||+.++...++.++..|+|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 4799999999999999875 999999999999324446778999999985
|
It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A .... |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.1e-08 Score=84.79 Aligned_cols=93 Identities=19% Similarity=0.356 Sum_probs=67.0
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCCC----CCCC--cEEEecccc
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFES----VPEG--DAILMKWIL 295 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~~----~p~~--D~i~~~~vl 295 (390)
..+||||||.|.++..+++.+|+..++++|+ ...+..+.+ .+|+.++++|+..- ++.+ |-|++.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~--- 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN--- 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE---
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe---
Confidence 3899999999999999999999999999998 444444332 48999999999762 3333 655443
Q ss_pred ccCChhH-----------HHHHHHHHHHhCCCCcEEEEEecc
Q 016366 296 HCWDDDH-----------CLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 296 h~~~d~~-----------~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+||+. ...+|..+.+.|+|||.|.+.+-.
T Consensus 96 --FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 96 --FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp --S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred --CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 34443 347999999999999998875543
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-07 Score=80.86 Aligned_cols=102 Identities=10% Similarity=0.233 Sum_probs=70.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCC-CCCCC--c
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEG--D 287 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~-~~p~~--D 287 (390)
..+++.++ ..+..++||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+.. |
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 34556665 5667899999999999999999983 56777777 677776654 3589999999988 66653 8
Q ss_pred EEEeccccccCChhHHHHHHHHHHHh--CCCCcEEEEEec
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKA--VPGNGKVIVMNS 325 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~--L~pgG~lli~e~ 325 (390)
.|+++--+| ...+ ++.++.+. +.++|.+++-..
T Consensus 80 ~vi~n~Py~-~~~~----~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 80 KVVGNLPYN-ISTP----ILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred EEEECCCcc-cHHH----HHHHHHhcCCCcceEEEEEEHH
Confidence 887665444 4433 34444433 346676665433
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-07 Score=91.71 Aligned_cols=112 Identities=20% Similarity=0.193 Sum_probs=80.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------C-CceEEECCCCC-CC--CC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFE-SV--PE 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~-rv~~~~gd~~~-~~--p~ 285 (390)
.+...++ ..++.+|||+|||+|..+..+++..++.+++++|+ +.+++.++++ . ++.+..+|... +. +.
T Consensus 229 ~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 229 WVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 3444455 56678999999999999999999888788999998 7777766542 1 23447777765 22 22
Q ss_pred --CcEEEec------cccccCChh-------H-------HHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 286 --GDAILMK------WILHCWDDD-------H-------CLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 286 --~D~i~~~------~vlh~~~d~-------~-------~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
.|.|++. .+++..|+- + -.++|+++.+.|||||++++++-....
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 2999852 456655541 1 257999999999999999988766543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.8e-07 Score=90.50 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=79.2
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCC---CCC--
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES---VPE-- 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~---~p~-- 285 (390)
.++..++ ..++.+|||+|||+|..+..+++..++.+++++|+ +.+++.++++ .+++++++|+.+. .+.
T Consensus 235 ~~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 235 LAATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 3344454 55678999999999999999999988788999998 7787777642 2478999999762 222
Q ss_pred CcEEEecc------cccc-------CChhH-------HHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 286 GDAILMKW------ILHC-------WDDDH-------CLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 286 ~D~i~~~~------vlh~-------~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
.|.|++.- ++.. ....+ ..++|+++.+.|+|||++++++-..
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 39998422 1211 11111 2479999999999999999877543
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.3e-07 Score=79.00 Aligned_cols=100 Identities=17% Similarity=0.316 Sum_probs=77.3
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCCCCCC-C
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFESVPE-G 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~~~p~-~ 286 (390)
...+++.+. +++..+|||||||+|..+.-+++-.. +++.+++ +...+.|++ ..+|.++++|...-+|+ +
T Consensus 61 vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 61 VARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 345666666 78889999999999999999888765 6666776 777777775 36799999999885554 3
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 287 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|.|+..-..-..|+. +.+.|+|||++++..-
T Consensus 138 PyD~I~Vtaaa~~vP~~--------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVPEA--------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCCHH--------HHHhcccCCEEEEEEc
Confidence 999888776655543 3458999999998665
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.5e-07 Score=90.98 Aligned_cols=108 Identities=14% Similarity=0.082 Sum_probs=79.4
Q ss_pred HHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-C----CCC
Q 016366 219 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S----VPE 285 (390)
Q Consensus 219 ~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~----~p~ 285 (390)
...+. ..++.+|||+|||+|..+..+++... ..+++++|+ +.+++.++++ .+|+++++|+.+ + .+.
T Consensus 245 ~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 245 APLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred HHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccccc
Confidence 33344 55678999999999999999998754 468999998 7777766542 468999999876 3 222
Q ss_pred -C-cEEEec------cccccCChh-------H-------HHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 286 -G-DAILMK------WILHCWDDD-------H-------CLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 286 -~-D~i~~~------~vlh~~~d~-------~-------~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
. |.|++. .+++..++. + -.++|.++.+.|||||+++.++-..
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 2 999863 455554431 1 2588999999999999998876443
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-07 Score=84.25 Aligned_cols=102 Identities=21% Similarity=0.354 Sum_probs=73.2
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC-
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE- 285 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~- 285 (390)
...+++.+. +.+..+|||||||+|.++..++... +.-+++.+|. +...+.|+++ .+|+++++|....++.
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 346677777 7888999999999999999998864 4446778886 7788877753 5899999998875553
Q ss_pred C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 286 G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 286 ~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
+ |.|++.......|.. ..+.|++||++++.-.
T Consensus 140 apfD~I~v~~a~~~ip~~--------l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPEA--------LLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS--HH--------HHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccchHHHH--------HHHhcCCCcEEEEEEc
Confidence 3 999998877655432 3457899999998444
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.5e-07 Score=80.52 Aligned_cols=93 Identities=16% Similarity=0.318 Sum_probs=71.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCc--eEEECCCCC--CCCCC--cEEEeccccccC-
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGV--EHVGGNMFE--SVPEG--DAILMKWILHCW- 298 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv--~~~~gd~~~--~~p~~--D~i~~~~vlh~~- 298 (390)
...-|||||||+|..+..+.... -.++++|+ |.|++.|.+ ..+ .++-+|+-+ |++.+ |.+++...++++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 36789999999999888777653 67899999 999999886 223 477788877 55555 888777666543
Q ss_pred --------ChhHHHHHHHHHHHhCCCCcEEEE
Q 016366 299 --------DDDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 299 --------~d~~~~~~L~~~~~~L~pgG~lli 322 (390)
|......++..++..|++|++.++
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 344456788999999999999776
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=5e-07 Score=90.20 Aligned_cols=108 Identities=15% Similarity=0.171 Sum_probs=77.5
Q ss_pred HHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCC---CCCC-
Q 016366 219 LEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VPEG- 286 (390)
Q Consensus 219 ~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~---~p~~- 286 (390)
...+. ..++.+|||+|||+|..+..+++.. ++.+++++|+ +.+++.++++ .+|+++.+|+.+. ++..
T Consensus 243 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~f 321 (444)
T PRK14902 243 APALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKF 321 (444)
T ss_pred HHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccC
Confidence 33444 5567899999999999999999976 6778999998 7777766542 4589999999762 3333
Q ss_pred cEEEecc------ccccCC-------hhH-------HHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 287 DAILMKW------ILHCWD-------DDH-------CLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 287 D~i~~~~------vlh~~~-------d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|+|++.- ++.+.| ..+ ...+|+++.+.|+|||+++.++-..
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 9998742 121111 111 2468999999999999998765443
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.7e-07 Score=80.55 Aligned_cols=92 Identities=9% Similarity=0.056 Sum_probs=70.2
Q ss_pred cceEEEEcCCccHHHHHHHhhC---CCCeEEEecc-hHHHhhCCCC-CCceEEECCCCC-CCCCC-cEEEeccccccCC-
Q 016366 228 VERLVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAILMKWILHCWD- 299 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~---p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~~- 299 (390)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.|++. +++.++.+|+.. +.... |+|+++=-++...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 4568888888 8888888864 679999999987 44433 9999886555322
Q ss_pred -h--------hHHHHHHHHHHHhCCCCcE
Q 016366 300 -D--------DHCLRILKNCYKAVPGNGK 319 (390)
Q Consensus 300 -d--------~~~~~~L~~~~~~L~pgG~ 319 (390)
+ .-...+++++.++++||+.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1 1244689999997777664
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-06 Score=94.66 Aligned_cols=122 Identities=20% Similarity=0.178 Sum_probs=85.5
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----------------------CCceEEECCCCCCCC
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------------------AGVEHVGGNMFESVP 284 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----------------------~rv~~~~gd~~~~~p 284 (390)
..+|||+|||+|..+..+++++|+.+++++|+ +.+++.|+++ +||+++++|+++.++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999899999998 7777766421 379999999988554
Q ss_pred C----CcEEEec--ccccc----CC--------------------------hh----HHHHHHHHHHHhCCCCcEEEEEe
Q 016366 285 E----GDAILMK--WILHC----WD--------------------------DD----HCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 285 ~----~D~i~~~--~vlh~----~~--------------------------d~----~~~~~L~~~~~~L~pgG~lli~e 324 (390)
. .|+|+++ ++... ++ ++ -.++++..+.+.|+|||++++ |
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-E 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-N 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-E
Confidence 2 2988876 22110 00 01 125677888889999997663 3
Q ss_pred cccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHH-HHHHHCCCCeeEEEec
Q 016366 325 SIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT-ELAIAAGFKGINFASC 379 (390)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~-~ll~~aGf~~~~~~~~ 379 (390)
.-.. ..+.+. +++++.||+.++++..
T Consensus 278 iG~~-----------------------------q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 278 MGGR-----------------------------PGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred ECcc-----------------------------HHHHHHHHHHHHCCCCeeEEeee
Confidence 3211 133456 5788888888777654
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.5e-07 Score=88.50 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=75.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC-C-cEEEec--
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G-DAILMK-- 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~-~-D~i~~~-- 292 (390)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .+|+++.+|+.+..+. . |+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 45668999999999999999888653 458899998 7787776642 4689999999873333 3 999862
Q ss_pred ----cccc-------cCChhH-------HHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 293 ----WILH-------CWDDDH-------CLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 293 ----~vlh-------~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
.++. .++.++ -.++|.++.+.|+|||++++.+-...
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 1111 122222 23689999999999999998775543
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.6e-07 Score=87.01 Aligned_cols=98 Identities=19% Similarity=0.249 Sum_probs=70.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------------C----CceEEECCCCC-C----CC
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------A----GVEHVGGNMFE-S----VP 284 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------------~----rv~~~~gd~~~-~----~p 284 (390)
+..+|||+|||.|.=+........ -..+++|+ +..++.|+++ . ...++.+|.+. . ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 668999999999987777776543 36788898 5566666542 1 25678888875 2 22
Q ss_pred -C--C-cEEEeccccccC--ChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 285 -E--G-DAILMKWILHCW--DDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 285 -~--~-D~i~~~~vlh~~--~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
. . |+|-|.+.||+. +.+.++.+|+++.+.|+|||+++...+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 2 3 999999999984 567788899999999999999987443
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.3e-07 Score=81.51 Aligned_cols=104 Identities=14% Similarity=0.257 Sum_probs=76.6
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHh-hCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITS-KYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP- 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~-~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p- 284 (390)
..|+..++ ..++.+|||.|.|+|.++..+++ -.|.-++.-+|. ++..+.|++. ++|++...|+.+ -++
T Consensus 30 ~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 30 SYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 35666666 88999999999999999999997 468889999997 6666666642 579999999864 332
Q ss_pred ---CC-cEEEeccccccCChhHHHHHHHHHHHhC-CCCcEEEEEeccc
Q 016366 285 ---EG-DAILMKWILHCWDDDHCLRILKNCYKAV-PGNGKVIVMNSIV 327 (390)
Q Consensus 285 ---~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L-~pgG~lli~e~~~ 327 (390)
.. |.|++ ++|+++ ..+..+.++| +|||++++.-++.
T Consensus 109 ~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 109 ELESDFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp T-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEEEESSH
T ss_pred cccCcccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEEECCCH
Confidence 22 87664 678888 7899999999 8999999977663
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.3e-07 Score=82.38 Aligned_cols=92 Identities=20% Similarity=0.333 Sum_probs=68.8
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhC----CC--CCCceEEECCCCC---C-CCCC--cEEEecccc
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA----PS--YAGVEHVGGNMFE---S-VPEG--DAILMKWIL 295 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a----~~--~~rv~~~~gd~~~---~-~p~~--D~i~~~~vl 295 (390)
..+||||||.|.++..+|+++|+..++++++ ...+..+ .+ ..|+.++++|+.+ . ++.+ |-|++++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F-- 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF-- 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC--
Confidence 5799999999999999999999999999997 3333322 22 2489999999876 2 3343 6665443
Q ss_pred ccCChhH-----------HHHHHHHHHHhCCCCcEEEEEec
Q 016366 296 HCWDDDH-----------CLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 296 h~~~d~~-----------~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
||+. ...+|+.+.+.|+|||.|.+.+-
T Consensus 128 ---PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 128 ---PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred ---CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 3332 34689999999999999987543
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2e-06 Score=85.22 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=75.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-C-C-CCC-cEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S-V-PEG-DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~-~-p~~-D~i~~~ 292 (390)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ ++++++.+|..+ + . +.. |.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5667899999999999999999876 4578999998 7777776642 458899999875 3 2 223 999862
Q ss_pred ------cccccCCh-------h-------HHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 293 ------WILHCWDD-------D-------HCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 293 ------~vlh~~~d-------~-------~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
.++...|+ + .-.++|.++.+.|+|||.++.++-...
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 22222121 1 125789999999999999877665543
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-06 Score=77.52 Aligned_cols=110 Identities=17% Similarity=0.307 Sum_probs=66.9
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC---------------CCCceEEECCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------------YAGVEHVGGNM 279 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------------~~rv~~~~gd~ 279 (390)
..+++.+. +.+...++|||||.|......+...+--+++++++ +...+.+.. ..++++..+||
T Consensus 32 ~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 32 SKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 35556665 67788999999999999988887776556899987 444333321 25688999999
Q ss_pred CC-C-----CCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 280 FE-S-----VPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 280 ~~-~-----~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
.+ + +.++|+|++++.+ |+++ ...-|.+....||||.+++-...+.+.
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk~G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELKPGARIISTKPFCPR 163 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS-TT-EEEESS-SS-T
T ss_pred cccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCCCCCEEEECCCcCCC
Confidence 87 4 2356999999986 5554 445567778889999988766555544
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.8e-06 Score=69.59 Aligned_cols=115 Identities=18% Similarity=0.296 Sum_probs=89.9
Q ss_pred cHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCC-CCCceEEECCCCC-C--CC
Q 016366 211 STIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFE-S--VP 284 (390)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~-~--~p 284 (390)
+...++.++..++ +..+.-|||+|.|+|.++.+++++. ++...+.++. ++......+ .+.++++.||.++ . +.
T Consensus 33 Ss~lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 33 SSILARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLG 111 (194)
T ss_pred cHHHHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence 3344556666666 7778899999999999999999865 4445555554 666665554 5889999999986 3 22
Q ss_pred ---CC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 285 ---EG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 285 ---~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.. |.|++.--+-.+|-....++|+.+...|++||.++-...-
T Consensus 112 e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 112 EHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 22 9999999999999999999999999999999998876665
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.6e-06 Score=79.04 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=74.2
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCC--CCcEEEecc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVP--EGDAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p--~~D~i~~~~ 293 (390)
..++.+|||+|||+|..+..+++... ...++++|+ +.+++.++++ .+|+++..|... +.. ..|.|++.-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45678999999999999999998764 357899998 7777666542 468899999765 322 239997631
Q ss_pred ------cccc-------CChhH-------HHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 294 ------ILHC-------WDDDH-------CLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 294 ------vlh~-------~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
++.. +.++. -.++|+++.+.|+|||+|+.++-...
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 2221 22222 24699999999999999987765443
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.3e-06 Score=77.93 Aligned_cols=91 Identities=11% Similarity=0.291 Sum_probs=62.5
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCC-CCCCCc
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEGD 287 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~-~~p~~D 287 (390)
+...+++.++ ..+..+|||||||+|.++..++++++. ++++|. +.+++.+++ .++++++.+|+.+ +++..|
T Consensus 17 i~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 17 VIQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 3456666665 667789999999999999999999876 555554 777776654 3689999999988 655334
Q ss_pred ---EEEeccccccCChhHHHHHHHHHHH
Q 016366 288 ---AILMKWILHCWDDDHCLRILKNCYK 312 (390)
Q Consensus 288 ---~i~~~~vlh~~~d~~~~~~L~~~~~ 312 (390)
+|+. +.=++.+. .++.++..
T Consensus 94 ~~~~vvs-NlPy~i~~----~il~~ll~ 116 (253)
T TIGR00755 94 KQLKVVS-NLPYNISS----PLIFKLLE 116 (253)
T ss_pred CcceEEE-cCChhhHH----HHHHHHhc
Confidence 4444 43333443 44555543
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.7e-06 Score=83.19 Aligned_cols=100 Identities=20% Similarity=0.184 Sum_probs=69.5
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCC-----
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV----- 283 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~----- 283 (390)
..+++.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|+++ ++++++++|+.+.+
T Consensus 287 ~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~ 363 (443)
T PRK13168 287 ARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPW 363 (443)
T ss_pred HHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhh
Confidence 34445444 4566799999999999999999886 47888887 8888877752 57999999987522
Q ss_pred CC-C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 284 PE-G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 284 p~-~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+. . |+|++.=--. ...++++.+.+ ++|++.++++-
T Consensus 364 ~~~~fD~Vi~dPPr~-----g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 364 ALGGFDKVLLDPPRA-----GAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hcCCCCEEEECcCCc-----ChHHHHHHHHh-cCCCeEEEEEe
Confidence 22 2 9987643221 12245555555 68888777743
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.1e-06 Score=78.04 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=92.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEE----CCCCCCC--CC-C-cEE
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVG----GNMFESV--PE-G-DAI 289 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~----gd~~~~~--p~-~-D~i 289 (390)
...++||||||+|.....++.+.++.+++++|+ +.+++.|++. ++|+++. .+++..+ +. . |+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999999888888888999999998 7788877742 3577754 2333322 22 2 999
Q ss_pred EeccccccCChhH---HHHHHHHHH----------------HhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhh
Q 016366 290 LMKWILHCWDDDH---CLRILKNCY----------------KAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR 350 (390)
Q Consensus 290 ~~~~vlh~~~d~~---~~~~L~~~~----------------~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 350 (390)
+|+=-+|.-.++. ..+-.++.. +.+.+||.+-++..+..+. ..+.....+ +..+
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS------~~~~~~~gw-ftsm 266 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES------KAFAKQVLW-FTSL 266 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH------HHHHhhCcE-EEEE
Confidence 9998887654432 112222222 3344677766665554331 000111111 1111
Q ss_pred cCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 351 DGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 351 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
-++.-+.+.+.+.|++.|.+.++++.+.
T Consensus 267 --v~kk~~l~~l~~~L~~~~~~~~~~~e~~ 294 (321)
T PRK11727 267 --VSKKENLPPLYRALKKVGAVEVKTIEMA 294 (321)
T ss_pred --eeccCCHHHHHHHHHHcCCceEEEEEEe
Confidence 2556689999999999999888887764
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.3e-05 Score=68.89 Aligned_cols=120 Identities=17% Similarity=0.207 Sum_probs=89.3
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCC-CCCC---C--cEEEeccccccCChh
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPE---G--DAILMKWILHCWDDD 301 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~-~~p~---~--D~i~~~~vlh~~~d~ 301 (390)
..++|||||=+...... .++-..++.+|+... .-.+.+.||++ |+|. . |+|.++-||.+.|++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~--------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ--------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC--------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 36999999976654433 244456788887321 12456789998 8873 2 999999999999954
Q ss_pred -HHHHHHHHHHHhCCCCcE-----EEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 302 -HCLRILKNCYKAVPGNGK-----VIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 302 -~~~~~L~~~~~~L~pgG~-----lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
..-++|+++++.|+|+|. |+|+-+.. . ..|.+..+.+.|+++++.-||..++
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~-------------------C---v~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP-------------------C---VTNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCch-------------------H---hhcccccCHHHHHHHHHhCCcEEEE
Confidence 466799999999999999 77754431 1 1267778899999999999999988
Q ss_pred EEecC
Q 016366 376 FASCV 380 (390)
Q Consensus 376 ~~~~~ 380 (390)
.....
T Consensus 179 ~~~~~ 183 (219)
T PF11968_consen 179 YKKSK 183 (219)
T ss_pred EEecC
Confidence 76554
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.8e-06 Score=78.74 Aligned_cols=104 Identities=12% Similarity=0.178 Sum_probs=77.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC----CCCeEEEecc-hHHHhhCCC------CCCceE--EECCCCCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY----PQIKAVNFDL-PHVVQDAPS------YAGVEH--VGGNMFES 282 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~----p~~~~~~~Dl-~~~~~~a~~------~~rv~~--~~gd~~~~ 282 (390)
.+|+..++ ...+|+|+|||+|.=+..+++.. ..++++.+|+ .+.++.+.+ .+.+++ +++|+.+.
T Consensus 68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 45555554 45689999999998777766654 3467899998 445554432 356665 88998662
Q ss_pred ---CC-----CC-cEE-EeccccccCChhHHHHHHHHHHH-hCCCCcEEEE
Q 016366 283 ---VP-----EG-DAI-LMKWILHCWDDDHCLRILKNCYK-AVPGNGKVIV 322 (390)
Q Consensus 283 ---~p-----~~-D~i-~~~~vlh~~~d~~~~~~L~~~~~-~L~pgG~lli 322 (390)
++ .. .++ ++.+.+.+++++++..+|+++++ .|+||+.++|
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 22 12 444 66789999999999999999999 9999998887
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.9e-06 Score=77.25 Aligned_cols=98 Identities=22% Similarity=0.290 Sum_probs=77.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----------CCceEEECCCCCC---CCC-CcEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFES---VPE-GDAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----------~rv~~~~gd~~~~---~p~-~D~i~ 290 (390)
+++++||-||+|.|..++++++..+..+++.+|+ +.+++.+++. +|++++.+|..+- .+. .|+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 3457999999999999999999998888888888 9999988862 7899999998762 333 39998
Q ss_pred eccccccCC--hhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 291 MKWILHCWD--DDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 291 ~~~vlh~~~--d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
+...=.--+ .---..+++.|+++|+++|.++..
T Consensus 155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 155 VDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 776543111 001247999999999999988875
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.9e-06 Score=76.59 Aligned_cols=103 Identities=16% Similarity=0.256 Sum_probs=75.0
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecch-HHHhhCCCC--------C----CceEEECCCCC-C
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP-HVVQDAPSY--------A----GVEHVGGNMFE-S 282 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~-~~~~~a~~~--------~----rv~~~~gd~~~-~ 282 (390)
.++..+. ++...++|+|||-|.=++..-++.- -..+++|++ ..+++|+++ . -+.|+++|-+. .
T Consensus 109 ~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~ 185 (389)
T KOG1975|consen 109 VLINLYT--KRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER 185 (389)
T ss_pred HHHHHHh--ccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH
Confidence 3444443 5667899999999987777665532 257899984 457777753 1 26788887654 1
Q ss_pred ----C--CC--CcEEEecccccc-C-ChhHHHHHHHHHHHhCCCCcEEEE
Q 016366 283 ----V--PE--GDAILMKWILHC-W-DDDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 283 ----~--p~--~D~i~~~~vlh~-~-~d~~~~~~L~~~~~~L~pgG~lli 322 (390)
+ ++ .|+|-|.+++|+ | +.+.++.+|+++.+.|+|||.++-
T Consensus 186 l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 186 LMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred HHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 2 22 399999999998 3 466788899999999999998774
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.7e-06 Score=76.49 Aligned_cols=80 Identities=19% Similarity=0.338 Sum_probs=60.9
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCC-CCCCCc
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEGD 287 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~-~~p~~D 287 (390)
.+..+++.+. ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++..|
T Consensus 17 ~~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d 93 (258)
T PRK14896 17 VVDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN 93 (258)
T ss_pred HHHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence 3455666655 5667899999999999999999985 36777776 777776654 3689999999988 666558
Q ss_pred EEEeccccc
Q 016366 288 AILMKWILH 296 (390)
Q Consensus 288 ~i~~~~vlh 296 (390)
.|+++-.++
T Consensus 94 ~Vv~NlPy~ 102 (258)
T PRK14896 94 KVVSNLPYQ 102 (258)
T ss_pred EEEEcCCcc
Confidence 888765544
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.4e-06 Score=75.85 Aligned_cols=98 Identities=17% Similarity=0.317 Sum_probs=73.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCCC--------CC-
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVP--------EG- 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~p--------~~- 286 (390)
..++.+|||||+++|..+..+++..| +.+++.+|. +...+.|++ .++|+++.||..+.++ ..
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 45788999999999999999999886 588998987 767776664 2689999999865211 12
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|+|++.. ........+..+.+.|+|||.+++-+...
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 9988765 33445688999999999999866544443
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.2e-06 Score=77.40 Aligned_cols=75 Identities=11% Similarity=0.240 Sum_probs=56.8
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCC-CCCCC--cE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DA 288 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~-~~p~~--D~ 288 (390)
..+++.+. ...+.+|||||||+|.++..++++.+ +++++|+ +.+++.+++. ++++++.+|+.+ +++.. |.
T Consensus 32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 108 (272)
T PRK00274 32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLK 108 (272)
T ss_pred HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcce
Confidence 45566555 56778999999999999999999986 5666666 8888877653 689999999987 55543 56
Q ss_pred EEecc
Q 016366 289 ILMKW 293 (390)
Q Consensus 289 i~~~~ 293 (390)
|+++-
T Consensus 109 vv~Nl 113 (272)
T PRK00274 109 VVANL 113 (272)
T ss_pred EEEeC
Confidence 65543
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.8e-06 Score=72.80 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=66.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC---------CCCceEEECCCCCCC-----CC-C-cE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFESV-----PE-G-DA 288 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~---------~~rv~~~~gd~~~~~-----p~-~-D~ 288 (390)
..++.+|||+|||+|..+..+++..+..+++..|.+.+++..+. .+++.+...|..++. .. . |+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34678999999999999999999877778888898656664442 256888888875532 22 3 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|+.+.++++ ++....+++.+.+.|+|+|.+++.....
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999986 4556799999999999999877766654
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.7e-06 Score=75.32 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=74.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCCC--------CC-
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVP--------EG- 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~p--------~~- 286 (390)
..++++|||||+++|..+..++...| +.+++.+|. +...+.|++ .++|+++.||+.+.++ ..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 56789999999999999999998775 567888887 667777665 2689999999876221 22
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|+|++.. +...-..++..+.+.|+|||.+++ |.++
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~-DNvL 230 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVM-DNVL 230 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEE-ecCc
Confidence 8887654 345567899999999999998665 4443
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.8e-05 Score=70.10 Aligned_cols=145 Identities=12% Similarity=0.072 Sum_probs=83.3
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHh-hCCCCCCceE-EECCCCC-C---CC-C-
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ-DAPSYAGVEH-VGGNMFE-S---VP-E- 285 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~-~a~~~~rv~~-~~gd~~~-~---~p-~- 285 (390)
...+++.++......++||+|||+|.++..+++. +.-+++++|. +.++. ..++.+++.. ...|+.. . ++ +
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 3455665551235678999999999999999987 3457899998 43555 4666666543 3335442 1 11 1
Q ss_pred --CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEE-EEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHH
Q 016366 286 --GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVI-VMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 362 (390)
Q Consensus 286 --~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ll-i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~ 362 (390)
.|+++++.. .+|..+.+.|+| |.++ ++-+.+.-.+.. ........|- .......+++
T Consensus 142 ~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~--~~~~giv~~~-------~~~~~~~~~~ 201 (228)
T TIGR00478 142 ATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREK--KNKKGVVRDK-------EAIALALHKV 201 (228)
T ss_pred eeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhh--cCcCCeecCH-------HHHHHHHHHH
Confidence 155554433 358888999999 5444 444433221100 0000000000 0111235667
Q ss_pred HHHHHHCCCCeeEEEecC
Q 016366 363 TELAIAAGFKGINFASCV 380 (390)
Q Consensus 363 ~~ll~~aGf~~~~~~~~~ 380 (390)
..++.+.||++..+.+.+
T Consensus 202 ~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 202 IDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHcCCCeEeeEEECC
Confidence 778888999998887765
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.9e-06 Score=73.10 Aligned_cols=106 Identities=12% Similarity=0.240 Sum_probs=79.4
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEE-CCCCCCCC---
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVG-GNMFESVP--- 284 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~-gd~~~~~p--- 284 (390)
++..+-...++++|||||.+.|..+..++...| +.+.+.+|. ++..+.|+++ ++|+++. +|..+.+.
T Consensus 50 ~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~ 129 (219)
T COG4122 50 LLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLL 129 (219)
T ss_pred HHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhcc
Confidence 333333356889999999999999999999999 888899998 8888888863 5688888 58765222
Q ss_pred -CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 285 -EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 285 -~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
.. |+|+... ....-.++|..+.+.|+|||.+++-+...+
T Consensus 130 ~~~fDliFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 130 DGSFDLVFIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred CCCccEEEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 23 9987654 334456899999999999997665444443
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.3e-06 Score=78.65 Aligned_cols=97 Identities=16% Similarity=0.090 Sum_probs=71.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCCCC---CC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFESVP---EG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~~p---~~-D~i~ 290 (390)
.++.+||.||+|.|..+.++++..+..+++.+|+ +.+++.+++ .+|++++.+|..+-+. +. |+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3568999999999999999998766667888887 888888775 2689999999987322 23 9998
Q ss_pred eccccccC---Ch--hHHHHHHH-HHHHhCCCCcEEEEE
Q 016366 291 MKWILHCW---DD--DHCLRILK-NCYKAVPGNGKVIVM 323 (390)
Q Consensus 291 ~~~vlh~~---~d--~~~~~~L~-~~~~~L~pgG~lli~ 323 (390)
+.-. ..+ +. ---..+++ .+++.|+|||.+++.
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 7631 111 00 01236787 899999999987753
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.1e-05 Score=71.27 Aligned_cols=95 Identities=13% Similarity=0.046 Sum_probs=65.4
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCC--C--CcEEEecccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP--E--GDAILMKWIL 295 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p--~--~D~i~~~~vl 295 (390)
...++||+|||+|.++..++.+.. .+++.+|. +.+++.++++ .+++++++|+++.++ . .|+|++.=-+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457999999999999997666553 57888887 6676665542 478999999876332 2 3999987664
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCcEEEEEec
Q 016366 296 HCWDDDHCLRILKNCYK--AVPGNGKVIVMNS 325 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~--~L~pgG~lli~e~ 325 (390)
+.- ....+++.+.+ .|+|++.+++...
T Consensus 132 ~~g---~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 132 RKG---LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CCC---hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 332 22345555555 3789887776544
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.5e-06 Score=76.18 Aligned_cols=90 Identities=13% Similarity=0.299 Sum_probs=63.7
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCC-CCC
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE-SVP 284 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~-~~p 284 (390)
++..+++... ..+..+|||||||+|.++..+++.... ++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 24 i~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~~--V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~ 100 (294)
T PTZ00338 24 VLDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAKK--VIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP 100 (294)
T ss_pred HHHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCCc--EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence 3445666555 567789999999999999999998654 566665 777776654 3679999999987 665
Q ss_pred CCcEEEeccccccCChhHHHHHH
Q 016366 285 EGDAILMKWILHCWDDDHCLRIL 307 (390)
Q Consensus 285 ~~D~i~~~~vlh~~~d~~~~~~L 307 (390)
..|+|+++- =++++.+...++|
T Consensus 101 ~~d~VvaNl-PY~Istpil~~ll 122 (294)
T PTZ00338 101 YFDVCVANV-PYQISSPLVFKLL 122 (294)
T ss_pred ccCEEEecC-CcccCcHHHHHHH
Confidence 558777643 3345555544555
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=6e-06 Score=75.11 Aligned_cols=94 Identities=21% Similarity=0.274 Sum_probs=74.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCC--cEEEeccccccCC-h
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWD-D 300 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~-d 300 (390)
.....++|+|||.|.++.- +|.+..++.|+ ...+..+++.+.......|+.. |.++. |..+...++||++ .
T Consensus 44 ~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred CCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 3567899999999977643 48888999998 5566666654444677889887 76653 9999999999987 4
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEE
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.....+++++.+.++|||..+|.
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEE
Confidence 44667999999999999997774
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.10 E-value=8e-06 Score=80.98 Aligned_cols=125 Identities=19% Similarity=0.272 Sum_probs=77.5
Q ss_pred hhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhcc---CCcceEEEEcCCccHHHHHHHhhC----CCCeEEEecc-h
Q 016366 189 IFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGF---QNVERLVDVGGGFGVTLSMITSKY----PQIKAVNFDL-P 260 (390)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~---~~~~~iLDiG~G~G~~~~~l~~~~----p~~~~~~~Dl-~ 260 (390)
.|+-+++|+.....|.+++. ..+.+..... .....|+|||||+|-++...+++. ...+++.++- +
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~-------~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~ 224 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIE-------EALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP 224 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHH-------HHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred cHhhHhcCHHHHHHHHHHHH-------HHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence 56777788888788887652 1223322211 125689999999999987776654 4578888885 3
Q ss_pred HHHhhC----CC---CCCceEEECCCCC-CCCCC-cEEEeccccccCC-hhHHHHHHHHHHHhCCCCcEEE
Q 016366 261 HVVQDA----PS---YAGVEHVGGNMFE-SVPEG-DAILMKWILHCWD-DDHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 261 ~~~~~a----~~---~~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~~-d~~~~~~L~~~~~~L~pgG~ll 321 (390)
.++... +. .++|+++.+|+++ ..|.- |+|++-.. ..+. .+-....|....+.|+|||.++
T Consensus 225 ~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 225 NAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 322221 21 2789999999999 77754 99975432 2222 2334567888899999998765
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=1e-05 Score=85.20 Aligned_cols=96 Identities=8% Similarity=0.061 Sum_probs=70.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCCCC---CCC-cEEEecc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESV---PEG-DAILMKW 293 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~~~---p~~-D~i~~~~ 293 (390)
.+.+|||+|||+|.++..+++.. ..+++.+|+ +.+++.++++ ++++++++|+++.+ +.. |+|++.=
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 46899999999999999999863 346899998 7788877752 37999999987632 333 9999852
Q ss_pred cccc--------C-ChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 294 ILHC--------W-DDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 294 vlh~--------~-~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
-... + ......+++..+.+.|+|||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 1100 0 0123457899999999999988764
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.8e-05 Score=68.69 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=68.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEEC----CCCCCC--CCC--cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGG----NMFESV--PEG--DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~g----d~~~~~--p~~--D~i 289 (390)
.....|||+|||+|..+..++...|+.+++.+|. +.++..|.+ .+++..+.- |...+. +.+ |++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 3445899999999999999999999999999998 666665554 267877744 444433 234 888
Q ss_pred Eec--cccccC-C---------------------hhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 290 LMK--WILHCW-D---------------------DDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 290 ~~~--~vlh~~-~---------------------d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+++ +|.+.= . -+....++.-+.|.|+|||.+.+--
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 876 333310 0 0113456677788999999876533
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.9e-05 Score=72.46 Aligned_cols=88 Identities=10% Similarity=0.037 Sum_probs=66.8
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCCCCC-CcEEEecc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFESVPE-GDAILMKW 293 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~~p~-~D~i~~~~ 293 (390)
+++.+||-||||.|..++++++. |. +++.+|+ +.|++.+++ .+|++++.. +.+...+ .|+|+...
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 57799999999999999999987 43 7777777 889988887 278888762 2221222 39999875
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
. + + ..+.+.++++|+|||.++..
T Consensus 148 ~---~-~---~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 148 E---P-D---IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred C---C-C---hHHHHHHHHhcCCCcEEEEC
Confidence 3 2 2 26789999999999988863
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00015 Score=61.64 Aligned_cols=133 Identities=17% Similarity=0.217 Sum_probs=83.7
Q ss_pred cceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCC-CC-cEEEeccccccC
Q 016366 228 VERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVP-EG-DAILMKWILHCW 298 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p-~~-D~i~~~~vlh~~ 298 (390)
+.-++|||||+|..+..+++.. |++.....|+ |.+++...+. -++..++.|+.+-+. .. |+++++--.---
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 5779999999999999988854 8888899998 7777664432 346788888877333 33 888776443322
Q ss_pred ChhH-------------------HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCH
Q 016366 299 DDDH-------------------CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTK 359 (390)
Q Consensus 299 ~d~~-------------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~ 359 (390)
+++. ..++|..+-..|.|.|.+++..... -.+
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~-----------------------------N~p 174 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA-----------------------------NKP 174 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh-----------------------------cCH
Confidence 2222 2345555556666666666533321 125
Q ss_pred HHHHHHHHHCCCCeeEEEec---CCceeEEEEe
Q 016366 360 KEYTELAIAAGFKGINFASC---VCNLYIMEFF 389 (390)
Q Consensus 360 ~e~~~ll~~aGf~~~~~~~~---~~~~~vi~~~ 389 (390)
+++.+.+++-||.......- ....+++..+
T Consensus 175 ~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~ 207 (209)
T KOG3191|consen 175 KEILKILEKKGYGVRIAMQRKAGGETLSILKFT 207 (209)
T ss_pred HHHHHHHhhcccceeEEEEEecCCceEEEEEEE
Confidence 66777888888876544322 1344555443
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.6e-05 Score=73.41 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=70.6
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCCCC-cEEEeccccccC
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHCW 298 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~ 298 (390)
.+-|||||||+|.++...+++. .-++..++...|.+.|++. +||.++.|-+++ ++|+. |+|++--.=..+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL 256 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML 256 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence 4678999999999998887765 4578888888888888762 789999999999 89976 998865332223
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEE
Q 016366 299 DDDHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L~pgG~ll 321 (390)
-++...+-.-.+++.|+|.|+++
T Consensus 257 ~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 257 VNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhHHHHHHHHHHHhhcCCCCccc
Confidence 33444444556789999999865
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-05 Score=81.45 Aligned_cols=98 Identities=14% Similarity=0.193 Sum_probs=69.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc--hHHHhhCC-----CCCCceEEECCCCC---CCCCC--cEEEeccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDAP-----SYAGVEHVGGNMFE---SVPEG--DAILMKWI 294 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl--~~~~~~a~-----~~~rv~~~~gd~~~---~~p~~--D~i~~~~v 294 (390)
....+||||||.|.++..+++.+|+..++++|+ +.+....+ ...|+.++++|+.. .++.+ |.|++.+-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 456799999999999999999999999999997 33322222 13678888888742 35544 77665432
Q ss_pred cccCCh-------hHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 295 LHCWDD-------DHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 295 lh~~~d-------~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
== |+- --...+|+.+++.|+|||.+.+.+-
T Consensus 427 DP-WpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 427 DP-WIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CC-CCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 21 111 1145789999999999999887543
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.9e-05 Score=72.37 Aligned_cols=112 Identities=13% Similarity=0.307 Sum_probs=78.4
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCC-eEEEecc-hHHHhhCCCC----CCceE--EECCCCC---CC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSY----AGVEH--VGGNMFE---SV 283 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~~----~rv~~--~~gd~~~---~~ 283 (390)
+.++...++.+ .+.+|||+|+|.|..+-++...++.. +++.+|. +.+++.++.. ..... ...++.. ++
T Consensus 22 l~El~~r~p~f-~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 100 (274)
T PF09243_consen 22 LSELRKRLPDF-RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF 100 (274)
T ss_pred HHHHHHhCcCC-CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC
Confidence 34555555533 45799999999999888888777743 4788887 6777765531 11111 1111111 33
Q ss_pred CCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 284 PEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 284 p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
+..|+|+++++|-.+++....++++++.+.+.+ .|+|+|+-.+.
T Consensus 101 ~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 101 PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 344999999999999998888999999888866 99999987655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.4e-05 Score=65.71 Aligned_cols=142 Identities=17% Similarity=0.218 Sum_probs=95.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--CC--ceEEECCCCC-CCCCC--cEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AG--VEHVGGNMFE-SVPEG--DAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--~r--v~~~~gd~~~-~~p~~--D~i~~~~vlh~ 297 (390)
+.....+|||||-|....++..+. --+.+-.|. ..|++.++.. +. +....+|-+. ++.+. |+|+.+-.+|+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 345689999999999999999876 225677786 6788888764 44 3456677665 66654 99999999998
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcc------cCHHHHHHHHHHCCC
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE------RTKKEYTELAIAAGF 371 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~------~t~~e~~~ll~~aGf 371 (390)
.+| ...-..+|..+|||+|.++- ..+-.+. ..+......+.-+-.. +|.. -...+.-.+|..|||
T Consensus 150 ~Nd--LPg~m~~ck~~lKPDg~Fia-smlggdT-----LyELR~slqLAelER~-GGiSphiSPf~qvrDiG~LL~rAGF 220 (325)
T KOG2940|consen 150 TND--LPGSMIQCKLALKPDGLFIA-SMLGGDT-----LYELRCSLQLAELERE-GGISPHISPFTQVRDIGNLLTRAGF 220 (325)
T ss_pred hcc--CchHHHHHHHhcCCCccchh-HHhcccc-----HHHHHHHhhHHHHHhc-cCCCCCcChhhhhhhhhhHHhhcCc
Confidence 765 34779999999999997653 2221221 1122222222222221 3321 134677889999999
Q ss_pred CeeEEE
Q 016366 372 KGINFA 377 (390)
Q Consensus 372 ~~~~~~ 377 (390)
+...+.
T Consensus 221 ~m~tvD 226 (325)
T KOG2940|consen 221 SMLTVD 226 (325)
T ss_pred ccceec
Confidence 987664
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.4e-05 Score=61.55 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=69.5
Q ss_pred HHHHHHhhccCCcceEEEEcCCccH-HHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCC---CC-cEE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGV-TLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP---EG-DAI 289 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~-~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p---~~-D~i 289 (390)
..+.+.++ .....+++|||||+|. ++..+.+. +..++++|+ +..++.+++. .+.++.+|++++-+ .+ |+|
T Consensus 6 ~~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 6 EFIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred HHHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHhcCCEE
Confidence 34555555 3345789999999996 77777765 457788887 7778877653 57999999999533 23 998
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 290 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 290 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
+... |..+...-+.++.+.. |.-++|...
T Consensus 82 ysir-----pp~el~~~~~~la~~~--~~~~~i~~l 110 (134)
T PRK04148 82 YSIR-----PPRDLQPFILELAKKI--NVPLIIKPL 110 (134)
T ss_pred EEeC-----CCHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 8766 5566677777777766 344555433
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.3e-05 Score=78.47 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=68.3
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEec---c-hHHHhhCCCCCCceEEECCC---CCCCCCC--cEEEecccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFD---L-PHVVQDAPSYAGVEHVGGNM---FESVPEG--DAILMKWILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D---l-~~~~~~a~~~~rv~~~~gd~---~~~~p~~--D~i~~~~vlh~ 297 (390)
....+||||||+|+|+..|+.+. +..+.+- . +..++.|.++. |-.+-+-+ .=|+|.. |+|-|+.++..
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleRG-vpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALERG-VPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhcC-cchhhhhhccccccCCccchhhhhccccccc
Confidence 34578999999999999999874 4333222 2 33444444432 22222222 2277765 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
|...+ ..+|-++-|+|+|||+++++.+-..
T Consensus 194 W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred chhcc-cceeehhhhhhccCceEEecCCccc
Confidence 98665 3689999999999999998776544
|
; GO: 0008168 methyltransferase activity |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.9e-05 Score=70.90 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=73.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCCC---------CC
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVP---------EG 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~p---------~~ 286 (390)
..++.+|||||+++|..+..+++.. ++.+++.+|. ++..+.|++ .++|+++.||+.+-++ ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 4567899999999999999999876 4678888887 666666654 2789999999876221 23
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|+|++..- ...-...+..+.+.|+|||.+++ |.++
T Consensus 157 fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~-DNvl 192 (247)
T PLN02589 157 FDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGY-DNTL 192 (247)
T ss_pred ccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEE-cCCC
Confidence 88877642 34456889999999999998554 5543
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.1e-05 Score=75.80 Aligned_cols=97 Identities=14% Similarity=0.062 Sum_probs=68.7
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCCCC------CC-CcEEE
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESV------PE-GDAIL 290 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~~~------p~-~D~i~ 290 (390)
.+.+|||+|||+|.++...+.. +..+++.+|+ +.+++.++++ ++++++.+|+++.+ .. .|+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5689999999999998876653 3458899998 7788777652 36899999998732 12 29999
Q ss_pred eccccccCCh-------hHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 291 MKWILHCWDD-------DHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 291 ~~~vlh~~~d-------~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+.=-...-+. ....++++.+.+.|+|||.++.+.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 8733211111 123456677899999999988654
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.1e-05 Score=73.88 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=73.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCC---CCCC-C-cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPE-G-DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~---~~p~-~-D~i 289 (390)
+++.+||-||+|.|..+.++++..+-.+++.+|+ |.+++.+++ .+|++++.+|... ..++ . |+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4689999999999999999997765667888887 888888775 2689999999865 3334 4 999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhCCCCcEEEEEe
Q 016366 290 LMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 290 ~~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+....=-..+.. -...+++.+++.|+|||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 874432111111 13488999999999999988755
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.9e-05 Score=73.95 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=69.3
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCC-CC-cEEEeccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVP-EG-DAILMKWILH 296 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p-~~-D~i~~~~vlh 296 (390)
..++|||||||+|.++..-+++. ..++.++|-..+.+.+++. +.|+++.|.+++ .+| +- |+|++-+.=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 46899999999999999999887 5688999977777766652 458999999988 777 33 9997765433
Q ss_pred cCC-hhHHHHHHHHHHHhCCCCcEEE
Q 016366 297 CWD-DDHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 297 ~~~-d~~~~~~L~~~~~~L~pgG~ll 321 (390)
.+- +.-...+|-.=-+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 322 3333345555567999999765
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.2e-05 Score=74.96 Aligned_cols=97 Identities=23% Similarity=0.255 Sum_probs=66.2
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCC-----CCC
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES-----VPE 285 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~-----~p~ 285 (390)
+.+.+. ..+..+|||+|||+|.++..+++... +++++|. +.+++.++++ .+++++.+|+.+. ...
T Consensus 284 ~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~ 360 (431)
T TIGR00479 284 ALEALE-LQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAG 360 (431)
T ss_pred HHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcC
Confidence 344343 45668999999999999999998753 6788887 8888887752 5799999998652 112
Q ss_pred -C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 016366 286 -G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 286 -~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli 322 (390)
. |+|++.=---.+ ...+++.+.+ ++|++.+++
T Consensus 361 ~~~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 361 QIPDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred CCCCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEE
Confidence 2 888764321111 1255666554 788887666
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.8e-05 Score=66.55 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=85.8
Q ss_pred EEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCCCC---CcEEEeccccccCC
Q 016366 231 LVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPE---GDAILMKWILHCWD 299 (390)
Q Consensus 231 iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~p~---~D~i~~~~vlh~~~ 299 (390)
|.||||.+|.+...++++...-+++..|+ +..++.|++ .++|+++.+|-++.++. .|+|+... +.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAG----MG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAG----MG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEE----E-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEec----CC
Confidence 68999999999999999998888999998 777777765 26899999999886554 37777665 45
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 300 DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 300 d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
..-..++|.+....+++...|++ -+. .....+++||.+.||.+++-.-+
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lIL-qP~------------------------------~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLIL-QPN------------------------------THAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEE-EES------------------------------S-HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHhhHHHhccCCeEEE-eCC------------------------------CChHHHHHHHHHCCCEEEEeEEE
Confidence 56677888888777766556554 111 12567899999999999987655
Q ss_pred C---CceeEEEE
Q 016366 380 V---CNLYIMEF 388 (390)
Q Consensus 380 ~---~~~~vi~~ 388 (390)
. -++.|+.+
T Consensus 126 ~e~~~~YeIi~~ 137 (205)
T PF04816_consen 126 EENGRFYEIIVA 137 (205)
T ss_dssp EETTEEEEEEEE
T ss_pred eECCEEEEEEEE
Confidence 4 23345544
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.4e-05 Score=72.11 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=50.3
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-C--CCC-CcEEEec
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPE-GDAILMK 292 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~--~p~-~D~i~~~ 292 (390)
.+.+|||+|||+|.++..+++.. .+++++|. +.+++.+++. ++++++++|+.+ . ... .|+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 35799999999999999999854 57888887 8888877642 579999999976 2 112 3998876
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00011 Score=67.10 Aligned_cols=93 Identities=12% Similarity=0.328 Sum_probs=66.7
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC----CCCceEEECCCCC-CCCC--C
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS----YAGVEHVGGNMFE-SVPE--G 286 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~----~~rv~~~~gd~~~-~~p~--~ 286 (390)
.+..+++... ..+..+|+|||+|.|.++..++++...+.++.+| +.+++..++ .++++++.+|+.. ++++ .
T Consensus 18 v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD-~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~ 95 (259)
T COG0030 18 VIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEID-RRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ 95 (259)
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeC-HHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence 3456777666 5667899999999999999999999888888888 555555443 4789999999998 8885 3
Q ss_pred -cEEEeccccccCChhHHHHHHHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKN 309 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~ 309 (390)
+.|+.+-- ++.+.+-..++|..
T Consensus 96 ~~~vVaNlP-Y~Isspii~kll~~ 118 (259)
T COG0030 96 PYKVVANLP-YNISSPILFKLLEE 118 (259)
T ss_pred CCEEEEcCC-CcccHHHHHHHHhc
Confidence 66554433 33444444444433
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00027 Score=60.71 Aligned_cols=146 Identities=18% Similarity=0.179 Sum_probs=92.4
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecchHHH------------hhCCC--CCCceEEECCCCC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVV------------QDAPS--YAGVEHVGGNMFE 281 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl~~~~------------~~a~~--~~rv~~~~gd~~~ 281 (390)
+++.... ++...+|+|+=.|.|.++..+...- |.-.++.+- |.-. ..+++ ..+++.+..+...
T Consensus 39 E~L~FaG-lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~-p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A 116 (238)
T COG4798 39 EVLAFAG-LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYV-PAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVA 116 (238)
T ss_pred ceeEEec-cCCCCEEEEEecCCccHhhhhchhcCCceeEEEec-chhhcccccchhhhhhhhhhhhhhhhhhhhCCcccc
Confidence 3444333 7888999999999999998887743 333333221 2111 11111 2456666665554
Q ss_pred -CCCCC-cEEEeccccccC-----ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCC
Q 016366 282 -SVPEG-DAILMKWILHCW-----DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGG 354 (390)
Q Consensus 282 -~~p~~-D~i~~~~vlh~~-----~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g 354 (390)
..|+. |+++.....|++ ....+.++.+.++++|||||.+++.|.........+... .-
T Consensus 117 ~~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~---------------~~ 181 (238)
T COG4798 117 LGAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTI---------------TL 181 (238)
T ss_pred cCCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhh---------------hh
Confidence 44444 888775555543 244567899999999999999999999865533221110 11
Q ss_pred cccCHHHHHHHHHHCCCCeeEEEec
Q 016366 355 RERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 355 ~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
...+.+...+..+++||+..--..+
T Consensus 182 ~ri~~a~V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 182 HRIDPAVVIAEVEAAGFKLEAESEI 206 (238)
T ss_pred cccChHHHHHHHHhhcceeeeeehh
Confidence 1246788888999999998765544
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=5e-05 Score=65.99 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=67.7
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC--CCCeEEEecc-hHHHhhCCCC----------------CCceEEECCCCCCCC-
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY----------------AGVEHVGGNMFESVP- 284 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~Dl-~~~~~~a~~~----------------~rv~~~~gd~~~~~p- 284 (390)
+.++.++||||+|+|.++..+++-- +....+++|. |+.++.+++. .++.++.||-..-.+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 5678899999999999998888532 3344478887 8888876641 468899999987333
Q ss_pred CC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 285 EG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 285 ~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.+ |.|.+.-. +.++.+++-..|+|||+++|-
T Consensus 160 ~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 160 QAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cCCcceEEEccC--------ccccHHHHHHhhccCCeEEEe
Confidence 33 99887732 236678888899999999873
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0001 Score=63.33 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=75.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCCCcEEEeccccccCC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEGDAILMKWILHCWD 299 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~ 299 (390)
-...+|+|+|||||.++...+...|. +++++|+ |++++.++++ .+|+|+..|+.+.-...|.++++=-+.-+-
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~ 122 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQR 122 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCcccc
Confidence 35678999999999999998877653 5666776 8888888864 579999999876433347777664443321
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 300 DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 300 d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
...=+.+|.+..+.- -.++ . -++.-+.+-+++..++.|+++....
T Consensus 123 rhaDr~Fl~~Ale~s---~vVY----------------------s--------iH~a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 123 RHADRPFLLKALEIS---DVVY----------------------S--------IHKAGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred ccCCHHHHHHHHHhh---heEE----------------------E--------eeccccHHHHHHHHHhcCCeEEEEE
Confidence 111124455544432 0000 0 1111267778888899998887653
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=1.7e-05 Score=68.49 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=85.9
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCCCCCC---CcEEEeccccccCChhH
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPE---GDAILMKWILHCWDDDH 302 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~---~D~i~~~~vlh~~~d~~ 302 (390)
+.+.++||+|+|.|..+..++..+.++-++.+. ..|..+.++. +.++... .+.... -|+|.|.++|.-.-++-
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~feevyATElS-~tMr~rL~kk-~ynVl~~--~ew~~t~~k~dli~clNlLDRc~~p~ 186 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEEVYATELS-WTMRDRLKKK-NYNVLTE--IEWLQTDVKLDLILCLNLLDRCFDPF 186 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHHHHHHHhh-HHHHHHHhhc-CCceeee--hhhhhcCceeehHHHHHHHHhhcChH
Confidence 346899999999999999998877665444443 5566665542 1222211 111111 29999999998776665
Q ss_pred HHHHHHHHHHhCCC-CcEEEEEecccCC------CCCcchHHhhhhhhhhhhhhhcCCCcccC--HHHHHHHHHHCCCCe
Q 016366 303 CLRILKNCYKAVPG-NGKVIVMNSIVPE------IPEVSSAARETSLLDVLLMTRDGGGRERT--KKEYTELAIAAGFKG 373 (390)
Q Consensus 303 ~~~~L~~~~~~L~p-gG~lli~e~~~~~------~~~~~~~~~~~~~~d~~~~~~~~~g~~~t--~~e~~~ll~~aGf~~ 373 (390)
++|+.++.+|+| +|++++. .+.|- +....+. +... .+- . +|+.+. ...+.++|+++||.+
T Consensus 187 --kLL~Di~~vl~psngrviva-LVLP~~hYVE~N~~g~~~-rPdn-----~Le-~-~Gr~~ee~v~~~~e~lr~~g~~v 255 (288)
T KOG3987|consen 187 --KLLEDIHLVLAPSNGRVIVA-LVLPYMHYVETNTSGLPL-RPDN-----LLE-N-NGRSFEEEVARFMELLRNCGYRV 255 (288)
T ss_pred --HHHHHHHHHhccCCCcEEEE-EEecccceeecCCCCCcC-CchH-----HHH-h-cCccHHHHHHHHHHHHHhcCchh
Confidence 899999999999 7887653 22221 1111111 0000 111 1 454332 344678899999999
Q ss_pred eEEEecC
Q 016366 374 INFASCV 380 (390)
Q Consensus 374 ~~~~~~~ 380 (390)
...+..+
T Consensus 256 eawTrlP 262 (288)
T KOG3987|consen 256 EAWTRLP 262 (288)
T ss_pred hhhhcCC
Confidence 8777665
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00049 Score=60.45 Aligned_cols=112 Identities=16% Similarity=0.134 Sum_probs=79.4
Q ss_pred cHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecchHHHhhCCCCCCceEEECCCCC-CC-----
Q 016366 211 STIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SV----- 283 (390)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~-~~----- 283 (390)
+.+...+|.+.+.-+.+..+|+|+|+..|+.+.-+++... ..+++++|+.++-.. ++|.++++|+++ +.
T Consensus 29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----~~V~~iq~d~~~~~~~~~l~ 104 (205)
T COG0293 29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----PGVIFLQGDITDEDTLEKLL 104 (205)
T ss_pred HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----CCceEEeeeccCccHHHHHH
Confidence 3345567777776567889999999999999998888764 456899997554443 459999999987 32
Q ss_pred ---CC-C-cEEEec---cccccCC------hhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 284 ---PE-G-DAILMK---WILHCWD------DDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 284 ---p~-~-D~i~~~---~vlh~~~------d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+. . |+|++. ++-.++. -.-+..++.-+.+.|+|||.+++-.+.
T Consensus 105 ~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 105 EALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 22 2 787643 2222222 223556788888899999999986665
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00012 Score=66.24 Aligned_cols=78 Identities=18% Similarity=0.377 Sum_probs=61.3
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCCC
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPE 285 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p~ 285 (390)
++..|.+.-+ ..+...|||||.|||.++..++++...+-++..| |.|++...++ .+.+++.||++. ++|.
T Consensus 46 v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~D-prmvael~krv~gtp~~~kLqV~~gD~lK~d~P~ 123 (315)
T KOG0820|consen 46 VIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEID-PRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPR 123 (315)
T ss_pred HHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecC-cHHHHHHHHHhcCCCccceeeEEecccccCCCcc
Confidence 3456676666 7888999999999999999999998766666666 7777665542 468999999998 8887
Q ss_pred CcEEEecc
Q 016366 286 GDAILMKW 293 (390)
Q Consensus 286 ~D~i~~~~ 293 (390)
-|+++.+-
T Consensus 124 fd~cVsNl 131 (315)
T KOG0820|consen 124 FDGCVSNL 131 (315)
T ss_pred cceeeccC
Confidence 78877643
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.63 E-value=7.5e-05 Score=68.27 Aligned_cols=91 Identities=15% Similarity=0.108 Sum_probs=59.7
Q ss_pred EEECCCCC--CC------CC-CcEEEeccccccCC--hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhh
Q 016366 274 HVGGNMFE--SV------PE-GDAILMKWILHCWD--DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL 342 (390)
Q Consensus 274 ~~~gd~~~--~~------p~-~D~i~~~~vlh~~~--d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 342 (390)
++..|..+ |+ |+ .|+|++..+|.... .++-.+.++++.++|||||.|++....-... ..
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~----------Y~ 207 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY----------YM 207 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE----------EE
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee----------EE
Confidence 66778876 33 23 49999999998753 4557789999999999999999877653220 00
Q ss_pred hhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEe
Q 016366 343 LDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 378 (390)
Q Consensus 343 ~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 378 (390)
..-.. + ..-..+.+.+++.|+++||.+.+...
T Consensus 208 vG~~~---F-~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 208 VGGHK---F-PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp ETTEE---E-E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ECCEe---c-ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 00000 0 11234799999999999999988874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00016 Score=63.52 Aligned_cols=92 Identities=15% Similarity=0.074 Sum_probs=59.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---CC---CC-cEEEe
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP---EG-DAILM 291 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~p---~~-D~i~~ 291 (390)
...++||++||+|.++.+++.+... +++.+|. +.+++.++++ ++++++.+|.++. .. .. |+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4578999999999999999998753 6788887 6666655542 4689999999552 21 12 66655
Q ss_pred ccccccCChhHHHHHHHHHH--HhCCCCcEEEE
Q 016366 292 KWILHCWDDDHCLRILKNCY--KAVPGNGKVIV 322 (390)
Q Consensus 292 ~~vlh~~~d~~~~~~L~~~~--~~L~pgG~lli 322 (390)
.=-+.. ....+++..+. ..|+++|.+++
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~ 157 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILEDTVLIVV 157 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCCCeEEEE
Confidence 433322 11234444443 36788886554
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00017 Score=70.44 Aligned_cols=90 Identities=7% Similarity=-0.052 Sum_probs=62.3
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCC---C-CcEEEecccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP---E-GDAILMKWIL 295 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p---~-~D~i~~~~vl 295 (390)
...+|||+|||+|.++..++... .+++++|. +.+++.++++ ++++++.+|+.+..+ . .|+|++.=--
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 34789999999999999999654 57888887 7788777652 478999999865221 2 3988876332
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
-.. ..++++.+. .++|++.+++.
T Consensus 311 ~G~----~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 311 RGI----GKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCC----cHHHHHHHH-hcCCCeEEEEE
Confidence 111 124455554 47888877764
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00089 Score=59.73 Aligned_cols=97 Identities=16% Similarity=0.312 Sum_probs=74.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCC----CeEEEecc-hHHHhh-----CCCCCC--ceEEECCCCCC---CCCC---c
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQ----IKAVNFDL-PHVVQD-----APSYAG--VEHVGGNMFES---VPEG---D 287 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~----~~~~~~Dl-~~~~~~-----a~~~~r--v~~~~gd~~~~---~p~~---D 287 (390)
.+..+++|+|.|+-.=+..++..+.. .+++-+|+ ..+++. .++++. |.-+++|+..+ +|.+ =
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999888777776655 77888897 444432 234555 44577888653 4443 4
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli 322 (390)
.++..+.|.++++++|..+|.+++.+|+||-++++
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 56888999999999999999999999999998887
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00011 Score=64.10 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=66.3
Q ss_pred HHHHHHHHhhccC--CcceEEEEcCCccHHHHHHHhhC-CCCeEEEecchHHHhhCCCCCCceEEECCCCCC--------
Q 016366 214 AMERILEHYEGFQ--NVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES-------- 282 (390)
Q Consensus 214 ~~~~l~~~~~~~~--~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~-------- 282 (390)
...++.+.++-++ +..++||+||++|.++..++++. +..+++++|+..+- ...++.++++|+.++
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i~~ 83 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----PLQNVSFIQGDITNPENIKDIRK 83 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----S-TTEEBTTGGGEEEEHSHHGGG
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc----cccceeeeecccchhhHHHhhhh
Confidence 3456777776333 45899999999999999999987 67889999984441 113445555555431
Q ss_pred -CC---CC-cEEEeccccccC---------ChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 283 -VP---EG-DAILMKWILHCW---------DDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 283 -~p---~~-D~i~~~~vlh~~---------~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.+ .. |+|++.-....- .-.-+...|.-+.+.|+|||.+++--..
T Consensus 84 ~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 84 LLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp SHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred hccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 12 23 888776622211 1122445566667789999988875443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0001 Score=63.63 Aligned_cols=99 Identities=15% Similarity=0.322 Sum_probs=65.7
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHh-------hCCC------CCCceEEECCCCCCCCCC-cEEEecc
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ-------DAPS------YAGVEHVGGNMFESVPEG-DAILMKW 293 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~-------~a~~------~~rv~~~~gd~~~~~p~~-D~i~~~~ 293 (390)
..+.|||||-|.++..++..+|+.-+.+.++ -.|.+ ..+. ..++.+...+...-+|.- .--.++-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 4699999999999999999999999999987 22322 2221 245677766665534431 1111222
Q ss_pred ccccCChhH-----------HHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 294 ILHCWDDDH-----------CLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 294 vlh~~~d~~-----------~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
.++.+||+. ...++.+..-.|++||.++.++-+.
T Consensus 142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred ceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 333344433 3457888889999999999876653
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00016 Score=67.60 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=60.5
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC----CCceEEECCCCC-C--CCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-S--VPE 285 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~-~--~p~ 285 (390)
..++++.+. ..+...++|.+||.|.++..+++..| +.+++++|. |.+++.+++. +|++++.+|+.+ . .+.
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence 456777776 56677999999999999999999986 789999998 8888887753 489999999875 1 222
Q ss_pred ---C-cEEEec
Q 016366 286 ---G-DAILMK 292 (390)
Q Consensus 286 ---~-D~i~~~ 292 (390)
. |+|++.
T Consensus 87 ~~~~vDgIl~D 97 (296)
T PRK00050 87 GLGKVDGILLD 97 (296)
T ss_pred CCCccCEEEEC
Confidence 3 777655
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00071 Score=59.92 Aligned_cols=127 Identities=19% Similarity=0.237 Sum_probs=86.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCC---CCCCC--cEEE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE---SVPEG--DAIL 290 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~---~~p~~--D~i~ 290 (390)
.+...+|||...|-|.++++.+++.- .+++-++- |.+++.|.-+ .+|+++.||..+ .+++. |+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 45678999999999999999998864 24444433 8888887754 358999999987 35543 8764
Q ss_pred eccccccCC------hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHH
Q 016366 291 MKWILHCWD------DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 364 (390)
Q Consensus 291 ~~~vlh~~~------d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ 364 (390)
|+=| .--...+-++++|.|+|||+++=..-.... .....| -.....+
T Consensus 211 -----HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~---------ryrG~d-------------~~~gVa~ 263 (287)
T COG2521 211 -----HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK---------RYRGLD-------------LPKGVAE 263 (287)
T ss_pred -----eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc---------ccccCC-------------hhHHHHH
Confidence 4322 223558899999999999997643222110 011111 1456678
Q ss_pred HHHHCCCCeeEEEec
Q 016366 365 LAIAAGFKGINFASC 379 (390)
Q Consensus 365 ll~~aGf~~~~~~~~ 379 (390)
.|+++||.+++....
T Consensus 264 RLr~vGF~~v~~~~~ 278 (287)
T COG2521 264 RLRRVGFEVVKKVRE 278 (287)
T ss_pred HHHhcCceeeeeehh
Confidence 899999998776544
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0028 Score=58.38 Aligned_cols=137 Identities=15% Similarity=0.218 Sum_probs=90.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc------hHHHhhCCC-------------------------------
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL------PHVVQDAPS------------------------------- 268 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl------~~~~~~a~~------------------------------- 268 (390)
+...+||-=|||-|+++-+++.+.-.+.+..++. .-++....+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 3457999999999999999999854444433331 112222111
Q ss_pred --------CCCceEEECCCCC-CCCC---C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcc
Q 016366 269 --------YAGVEHVGGNMFE-SVPE---G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVS 334 (390)
Q Consensus 269 --------~~rv~~~~gd~~~-~~p~---~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~ 334 (390)
..++....|||.+ ..+. + |+|+.++.+-- .+.+.+.|+.|++.|||||..+=.-+..-...
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~--- 209 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPLLYHFE--- 209 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCccccCC---
Confidence 0247788999988 3222 2 99988866643 34578999999999999997664444432210
Q ss_pred hHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEe
Q 016366 335 SAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 378 (390)
Q Consensus 335 ~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 378 (390)
+.. ......-+.+.+|++++.++.||++++...
T Consensus 210 ---------~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 ---------PMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ---------CCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000 000123567999999999999999987654
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00027 Score=61.67 Aligned_cols=89 Identities=15% Similarity=0.276 Sum_probs=67.7
Q ss_pred eEEEEcCCccHHHHHHHhhCCCCeEEEecc-h---HHHhhCCC---CCCceEEECCCCC-CCCCC-cEEEeccccccCCh
Q 016366 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P---HVVQDAPS---YAGVEHVGGNMFE-SVPEG-DAILMKWILHCWDD 300 (390)
Q Consensus 230 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~---~~~~~a~~---~~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d 300 (390)
+++|||+|.|.-+.-++-.+|+.+++.+|. . ..++.+.. .++++++++.+++ ..+.. |+|+++-+- +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----P 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS----S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc----C
Confidence 899999999999999999999999999995 2 23333332 4789999999887 33333 999988764 2
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
...++.-+...+++||++++.-
T Consensus 127 --l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEEEEEEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEc
Confidence 3378899999999999988753
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0026 Score=58.80 Aligned_cols=148 Identities=12% Similarity=0.113 Sum_probs=96.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC---------CCCceEEECCCCCCC----------CCC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFESV----------PEG 286 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~---------~~rv~~~~gd~~~~~----------p~~ 286 (390)
.+...|+.+|||-=.....+... +++++..+|+|++++.-++ ..++.++..|+.+.+ +..
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34568999999988777766422 3688999999988774332 257889999986321 112
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhh-hhhcCCCcccCHHHHHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLL-MTRDGGGRERTKKEYTE 364 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~g~~~t~~e~~~ 364 (390)
-++++-.++.+++.+++.++|+.+.+...||+.++ .|.+.+-.. ............... ....+--...+.+++.+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~-~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLA-FDYVRPLDG-EWRAGMRAPVYHAARGVDGSGLVFGIDRADVAE 236 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEE-EEeccccch-hHHHHHHHHHHHhhhcccccccccCCChhhHHH
Confidence 68888999999999999999999999988888766 555543111 000000000000000 00000011246899999
Q ss_pred HHHHCCCCeeEE
Q 016366 365 LAIAAGFKGINF 376 (390)
Q Consensus 365 ll~~aGf~~~~~ 376 (390)
+|++.||+....
T Consensus 237 ~l~~~Gw~~~~~ 248 (260)
T TIGR00027 237 WLAERGWRASEH 248 (260)
T ss_pred HHHHCCCeeecC
Confidence 999999998765
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0091 Score=57.88 Aligned_cols=152 Identities=16% Similarity=0.185 Sum_probs=87.8
Q ss_pred CcceEEEEcCCccHHHHHH--------Hhh-------CCCCeEEEecchH-----H---HhhCCC------------CCC
Q 016366 227 NVERLVDVGGGFGVTLSMI--------TSK-------YPQIKAVNFDLPH-----V---VQDAPS------------YAG 271 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l--------~~~-------~p~~~~~~~Dl~~-----~---~~~a~~------------~~r 271 (390)
+..+|+|+|||+|.++..+ .++ -|...+..-|+|. . +...++ ..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4668999999999766443 222 2567788788752 1 111110 011
Q ss_pred ---ceEEECCCCC-CCCCC--cEEEeccccccCCh--h----------------------------------HHHHHHHH
Q 016366 272 ---VEHVGGNMFE-SVPEG--DAILMKWILHCWDD--D----------------------------------HCLRILKN 309 (390)
Q Consensus 272 ---v~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d--~----------------------------------~~~~~L~~ 309 (390)
+.-+.|+|.+ -+|.. +++++++.||+++. + +-..+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3446689988 68876 99999999998862 1 11234555
Q ss_pred HHHhCCCCcEEEEEecccCCC-CCcch-HH------hhhhhhhhhhhhhc-------CC--CcccCHHHHHHHHHHCC-C
Q 016366 310 CYKAVPGNGKVIVMNSIVPEI-PEVSS-AA------RETSLLDVLLMTRD-------GG--GRERTKKEYTELAIAAG-F 371 (390)
Q Consensus 310 ~~~~L~pgG~lli~e~~~~~~-~~~~~-~~------~~~~~~d~~~~~~~-------~~--g~~~t~~e~~~ll~~aG-f 371 (390)
=.+-|.|||++++.-.-.++. +.... .. -...+.|+..-... .+ -..++.+|+++.+++.| |
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF 302 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSF 302 (386)
T ss_pred HHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCE
Confidence 566789999999876655431 11110 00 00112222111000 00 12468999999999888 6
Q ss_pred CeeEEEe
Q 016366 372 KGINFAS 378 (390)
Q Consensus 372 ~~~~~~~ 378 (390)
.+.++..
T Consensus 303 ~I~~le~ 309 (386)
T PLN02668 303 AIDKLEV 309 (386)
T ss_pred EeeeeEE
Confidence 6655543
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.012 Score=55.72 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=73.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCCCCC--CC-cEEEeccccccCChhH
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVP--EG-DAILMKWILHCWDDDH 302 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p--~~-D~i~~~~vlh~~~d~~ 302 (390)
.++.++|||||++|.++..++++. .+++++|...+-+.....++|+.+.+|.+...| .. |.++|.-+.. +
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~----P- 282 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK----P- 282 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC----H-
Confidence 567899999999999999999984 589999987677777778999999999887443 33 9999887743 2
Q ss_pred HHHHHHHHHHhCCCC-cEEEEEecccCC
Q 016366 303 CLRILKNCYKAVPGN-GKVIVMNSIVPE 329 (390)
Q Consensus 303 ~~~~L~~~~~~L~pg-G~lli~e~~~~~ 329 (390)
.++.+-+.++|..| -+-.|.+.-++-
T Consensus 283 -~rva~lm~~Wl~~g~cr~aIfnLKlpm 309 (357)
T PRK11760 283 -ARVAELMAQWLVNGWCREAIFNLKLPM 309 (357)
T ss_pred -HHHHHHHHHHHhcCcccEEEEEEEcCC
Confidence 26778888888877 344555555443
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0011 Score=55.39 Aligned_cols=95 Identities=18% Similarity=0.293 Sum_probs=63.2
Q ss_pred cCCcceEEEEcCCccHHHHHHHhh----CCCCeEEEecc-hHHHhhCCCC---------CCceEEECCCCC-CCCCC-cE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFE-SVPEG-DA 288 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~----~p~~~~~~~Dl-~~~~~~a~~~---------~rv~~~~gd~~~-~~p~~-D~ 288 (390)
..+..+|+|+|||.|.++..++.. .++.+++++|. +..++.+.++ .++++..+++.+ ..... ++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 356789999999999999999982 27889999997 5555554431 456666666654 22333 88
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
++.-|....+++ .+|+...+ |+-..++.-++
T Consensus 103 ~vgLHaCG~Ls~----~~l~~~~~---~~~~~l~~vpC 133 (141)
T PF13679_consen 103 LVGLHACGDLSD----RALRLFIR---PNARFLVLVPC 133 (141)
T ss_pred EEEeecccchHH----HHHHHHHH---cCCCEEEEcCC
Confidence 887666666555 45665544 56555554443
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00054 Score=66.83 Aligned_cols=90 Identities=13% Similarity=0.081 Sum_probs=68.0
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCC--C-CcEEEecccccc
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP--E-GDAILMKWILHC 297 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p--~-~D~i~~~~vlh~ 297 (390)
..+|||++||+|.++..++.+.+..+++++|+ +..++.++++ +++++..+|+...+. . .|+|++. ..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD-P~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID-PF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC-CC--
Confidence 46899999999999999998877567888998 7788777652 456788899865222 2 3999874 32
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
... ..+|..+.+.+++||.+++.
T Consensus 135 -Gs~--~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GSP--APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CCc--HHHHHHHHHHhcCCCEEEEE
Confidence 222 26788877889999999987
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00042 Score=59.18 Aligned_cols=92 Identities=12% Similarity=0.230 Sum_probs=69.6
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCCcEEEeccccccCCh
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEGDAILMKWILHCWDD 300 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~D~i~~~~vlh~~~d 300 (390)
..+.|+|.|+|-++...+++.. +++.++. |...+.+.++ .+++.+.||+.+ ++..+|+|+|-..=-.+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 6799999999999988777754 4455554 7666666653 679999999999 8866799987654333445
Q ss_pred hHHHHHHHHHHHhCCCCcEEEE
Q 016366 301 DHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli 322 (390)
++-..+++.+.+.|+-++.++=
T Consensus 112 E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 112 EKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred ccccHHHHHHHHHhhcCCcccc
Confidence 5566899999999999988764
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0012 Score=58.74 Aligned_cols=120 Identities=17% Similarity=0.255 Sum_probs=85.9
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc----hHHHhhCCC---CCCceEEECCCCC-C-CCC-CcEEEecccccc
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL----PHVVQDAPS---YAGVEHVGGNMFE-S-VPE-GDAILMKWILHC 297 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl----~~~~~~a~~---~~rv~~~~gd~~~-~-~p~-~D~i~~~~vlh~ 297 (390)
+.+++|||.|.|.-+.-++-.+|+.+++.+|. -..++.+.+ .++++++++.+++ . .+. .|+|+++-+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 68999999999999999999999999999995 223444432 4789999998887 3 234 6999988753
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
+ ...++.-+...+++||.++..-... ++. -..+.++....-|+++.++.
T Consensus 146 --~--L~~l~e~~~pllk~~g~~~~~k~~~--------------------------~~~-e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 146 --S--LNVLLELCLPLLKVGGGFLAYKGLA--------------------------GKD-ELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred --c--hHHHHHHHHHhcccCCcchhhhHHh--------------------------hhh-hHHHHHHHHHhhcCcEEEEE
Confidence 2 3367888889999999876422110 000 13445666677788888887
Q ss_pred ecC
Q 016366 378 SCV 380 (390)
Q Consensus 378 ~~~ 380 (390)
...
T Consensus 195 ~~~ 197 (215)
T COG0357 195 SLT 197 (215)
T ss_pred Eee
Confidence 665
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00076 Score=62.51 Aligned_cols=98 Identities=13% Similarity=0.255 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC----CCCceEEECCCCC-CCCC--
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS----YAGVEHVGGNMFE-SVPE-- 285 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~----~~rv~~~~gd~~~-~~p~-- 285 (390)
..+..+++.+. ......|+|||+|.|.++..+++...++.++..| +..++..++ .++++++.+|+.+ +.+.
T Consensus 17 ~~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d-~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 17 NIADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEID-PDLAKHLKERFASNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESS-HHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhcccCcceeecCc-HhHHHHHHHHhhhcccceeeecchhccccHHhh
Confidence 44567777776 6678999999999999999999998444444444 555554443 5899999999998 6554
Q ss_pred --CcEEEeccccccCChhHHHHHHHHHHHhCCC
Q 016366 286 --GDAILMKWILHCWDDDHCLRILKNCYKAVPG 316 (390)
Q Consensus 286 --~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~p 316 (390)
..+.+..++=++.+ ..++.++...-+.
T Consensus 95 ~~~~~~vv~NlPy~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 95 KNQPLLVVGNLPYNIS----SPILRKLLELYRF 123 (262)
T ss_dssp SSSEEEEEEEETGTGH----HHHHHHHHHHGGG
T ss_pred cCCceEEEEEecccch----HHHHHHHhhcccc
Confidence 33344444333333 3566666653333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.023 Score=49.44 Aligned_cols=140 Identities=11% Similarity=0.075 Sum_probs=92.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-----hHHHhhCCCCCCceEEECCCCCCCC-----C-CcEEEecc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PHVVQDAPSYAGVEHVGGNMFESVP-----E-GDAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-----~~~~~~a~~~~rv~~~~gd~~~~~p-----~-~D~i~~~~ 293 (390)
++++.+||-+|..+|....++..-.++-.+.+++. .+.++.+++++|+--+-+|+..|.. + .|+|+..-
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEec
Confidence 67889999999999999999998777555555554 3457778888999989999987532 2 28876432
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCe
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKG 373 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 373 (390)
- .+.++.-+..++...|++||.++++=-...-+...++.. -..+-.+.|++.||++
T Consensus 154 -A---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~--------------------vf~~ev~kL~~~~f~i 209 (231)
T COG1889 154 -A---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEE--------------------VFKDEVEKLEEGGFEI 209 (231)
T ss_pred -C---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHH--------------------HHHHHHHHHHhcCcee
Confidence 1 234456678889999999997766433322211111000 0122234567889999
Q ss_pred eEEEecC---CceeEEEE
Q 016366 374 INFASCV---CNLYIMEF 388 (390)
Q Consensus 374 ~~~~~~~---~~~~vi~~ 388 (390)
.++..+. ..+.++.+
T Consensus 210 ~e~~~LePye~DH~~i~~ 227 (231)
T COG1889 210 LEVVDLEPYEKDHALIVA 227 (231)
T ss_pred eEEeccCCcccceEEEEE
Confidence 9988775 34444443
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0063 Score=53.96 Aligned_cols=130 Identities=14% Similarity=0.142 Sum_probs=85.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-h----HHHhhCCCCCCceEEECCCCCCCC-----CC-cEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-P----HVVQDAPSYAGVEHVGGNMFESVP-----EG-DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~----~~~~~a~~~~rv~~~~gd~~~~~p-----~~-D~i~~~ 292 (390)
+.++.+||-+|..+|.+..++..-- |+-.+.+++. | +.++.|++++||--+-.|+..|.. +. |+|++.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 6788999999999999999998843 4666666765 3 457778889999999999987521 22 887755
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecc--cCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCC
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI--VPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aG 370 (390)
-. -| ++.+-+..++...||+||.++++=-. .+....+ . -..++-.+.|++.|
T Consensus 151 Va---Qp-~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p--~--------------------~vf~~e~~~L~~~~ 204 (229)
T PF01269_consen 151 VA---QP-DQARIAALNARHFLKPGGHLIISIKARSIDSTADP--E--------------------EVFAEEVKKLKEEG 204 (229)
T ss_dssp -S---ST-THHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSH--H--------------------HHHHHHHHHHHCTT
T ss_pred CC---Ch-HHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCH--H--------------------HHHHHHHHHHHHcC
Confidence 32 23 44567888999999999998875332 1111100 0 00222355668889
Q ss_pred CCeeEEEecC
Q 016366 371 FKGINFASCV 380 (390)
Q Consensus 371 f~~~~~~~~~ 380 (390)
|++.+...+.
T Consensus 205 ~~~~e~i~Le 214 (229)
T PF01269_consen 205 FKPLEQITLE 214 (229)
T ss_dssp CEEEEEEE-T
T ss_pred CChheEeccC
Confidence 9999988886
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00075 Score=63.13 Aligned_cols=102 Identities=19% Similarity=0.359 Sum_probs=66.2
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCe-EEEecc-h---HHHhhCCCC---CCceEEECCCCC---CCCCCcEEEeccccc
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-P---HVVQDAPSY---AGVEHVGGNMFE---SVPEGDAILMKWILH 296 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~-~~~~Dl-~---~~~~~a~~~---~rv~~~~gd~~~---~~p~~D~i~~~~vlh 296 (390)
+.+|||+|.|.|.-+-++-.-+|+++ ++.++. | .++....++ ........|+.. ++|..|.|.+..++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 46799999999998888888889875 455554 2 222222221 122223334432 566667666555555
Q ss_pred cC----ChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 297 CW----DDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 297 ~~----~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
.+ .+......++++...+.|||.|+|+|.-.+-
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 43 3334555899999999999999999986543
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0014 Score=57.14 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=64.8
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCe---------EEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCC-
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIK---------AVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE- 285 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~---------~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~- 285 (390)
+++...++|-=||+|.++++.+...+++. +++.|+ +.+++.++++ ..|.+...|+.+ +++.
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 67778999999999999999888777776 778887 7787776652 458899999988 6444
Q ss_pred C-cEEEeccccccC-Ch-----hHHHHHHHHHHHhCCCCcEEE
Q 016366 286 G-DAILMKWILHCW-DD-----DHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 286 ~-D~i~~~~vlh~~-~d-----~~~~~~L~~~~~~L~pgG~ll 321 (390)
. |+|+++=-+..- .. .--.++++.+.+.+++...++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 3 999988655432 21 113456788888898833333
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0034 Score=54.95 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=83.3
Q ss_pred ccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC-----CCCceEEECCCCC---
Q 016366 210 HSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-----YAGVEHVGGNMFE--- 281 (390)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-----~~rv~~~~gd~~~--- 281 (390)
+.+..+....+.+. .++.|||.||-|-|.....+.++-|..+.++---|+|.++-+. ..+|....|-..+
T Consensus 86 WEtpiMha~A~ai~--tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~ 163 (271)
T KOG1709|consen 86 WETPIMHALAEAIS--TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLN 163 (271)
T ss_pred hhhHHHHHHHHHHh--hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhc
Confidence 33333344444443 6789999999999999999999999988877666888887765 3678877775544
Q ss_pred CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 282 SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 282 ~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
.+|+. |.|+..---.+ .++...+.+.+.+.|||+|++-..+..-.+
T Consensus 164 ~L~d~~FDGI~yDTy~e~--yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 164 TLPDKHFDGIYYDTYSEL--YEDLRHFHQHVVRLLKPEGVFSYFNGLGAD 211 (271)
T ss_pred cccccCcceeEeechhhH--HHHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence 45554 88765533222 355778999999999999998877765433
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.014 Score=51.63 Aligned_cols=120 Identities=17% Similarity=0.162 Sum_probs=86.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCCC-C-C-cEEEecccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVP-E-G-DAILMKWIL 295 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~p-~-~-D~i~~~~vl 295 (390)
...++.||||-+|.+...+.+.++..+++..|+ +..++.|.+ .++++...+|.+.++. . . |+++...
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG-- 93 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG-- 93 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC--
Confidence 445599999999999999999999999999997 555554443 3789999999987554 3 3 8887655
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
+.......+|.+-.+-|+.--++++ .| +. ...++++||.+.+|.+..
T Consensus 94 --MGG~lI~~ILee~~~~l~~~~rlIL----QP------------------------n~---~~~~LR~~L~~~~~~I~~ 140 (226)
T COG2384 94 --MGGTLIREILEEGKEKLKGVERLIL----QP------------------------NI---HTYELREWLSANSYEIKA 140 (226)
T ss_pred --CcHHHHHHHHHHhhhhhcCcceEEE----CC------------------------CC---CHHHHHHHHHhCCceeee
Confidence 4556677888887777764344443 11 11 256678899999998876
Q ss_pred EEecCC
Q 016366 376 FASCVC 381 (390)
Q Consensus 376 ~~~~~~ 381 (390)
-.=+..
T Consensus 141 E~ileE 146 (226)
T COG2384 141 ETILEE 146 (226)
T ss_pred eeeecc
Confidence 655543
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.004 Score=51.40 Aligned_cols=95 Identities=19% Similarity=0.343 Sum_probs=63.6
Q ss_pred EEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCC---CC---ceEEECCCCC---CCCC--C-cEEEeccccc
Q 016366 231 LVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY---AG---VEHVGGNMFE---SVPE--G-DAILMKWILH 296 (390)
Q Consensus 231 iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~---~r---v~~~~gd~~~---~~p~--~-D~i~~~~vlh 296 (390)
++|+|||+|... .+....+. ..++++|. +.+++.++.. .. +.+..+|... ++.. . |++.....+|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 44443333 36777887 5555553321 11 5778887764 4443 3 8884444444
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 297 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 297 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
+.. ....+.++.+.++|+|.+++.+.....
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 444 458899999999999999988776543
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0012 Score=62.13 Aligned_cols=94 Identities=20% Similarity=0.370 Sum_probs=70.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCC-------------CCCceEEECCCCCCCCCC----
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS-------------YAGVEHVGGNMFESVPEG---- 286 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-------------~~rv~~~~gd~~~~~p~~---- 286 (390)
++..++|-+|||.|..++++.+ +|+ -+++.+|+ |+|++.++. .+|++.+..|.++.+..+
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4677999999999999999875 674 35667776 999998883 278999999998844321
Q ss_pred cEEEeccccccCChhH--------HHHHHHHHHHhCCCCcEEEEEec
Q 016366 287 DAILMKWILHCWDDDH--------CLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~--------~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|.|+. +++|+. ...+-+-+++.|+++|.+++...
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 66654 444443 34567778899999999887543
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0027 Score=59.72 Aligned_cols=163 Identities=13% Similarity=0.111 Sum_probs=102.9
Q ss_pred hhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecchHHHhhCCC----C-----CCceEEEC
Q 016366 208 FNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDLPHVVQDAPS----Y-----AGVEHVGG 277 (390)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl~~~~~~a~~----~-----~rv~~~~g 277 (390)
....++.-..+.+.+. .....|+-+|||-=.-+..+- .| .+++..+|+|++++.-++ . .+++++..
T Consensus 75 a~Rtr~fD~~~~~~~~--~g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~ 150 (297)
T COG3315 75 AARTRYFDDFVRAALD--AGIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAV 150 (297)
T ss_pred HHHHHHHHHHHHHHHH--hcccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEec
Confidence 3333333334444444 336789999998655544443 34 588999999999886543 2 27999999
Q ss_pred CCCC-CCCC----------C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcc--hH-Hhhhhh
Q 016366 278 NMFE-SVPE----------G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVS--SA-ARETSL 342 (390)
Q Consensus 278 d~~~-~~p~----------~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~--~~-~~~~~~ 342 (390)
|+++ ++++ . -++++-.++.+++.+.+.++|++|....+||..++............. .. ......
T Consensus 151 Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (297)
T COG3315 151 DLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRG 230 (297)
T ss_pred cccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccc
Confidence 9995 5442 1 588999999999999999999999999999888775443211110000 00 000000
Q ss_pred hhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEE
Q 016366 343 LDVLLMTRDGGGRERTKKEYTELAIAAGFKGINF 376 (390)
Q Consensus 343 ~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 376 (390)
.++..... .-......++..++.+.||.....
T Consensus 231 ~~~~~~e~--~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 231 EDLDRGEL--VYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred cccccccc--eeccCCHHHHHHHHHhcCEEEEec
Confidence 00000000 011235889999999999998766
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0056 Score=61.23 Aligned_cols=101 Identities=16% Similarity=0.210 Sum_probs=68.2
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCC------CCCceEEECCCCC---CCCCC-cEEE--
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE---SVPEG-DAIL-- 290 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~---~~p~~-D~i~-- 290 (390)
..++.+|||+++|.|.=+.+++....+ -.++..|+ +.-++..++ ..+|.+...|... .++.. |.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 456789999999999999999987643 46788887 444433332 2567788888754 23333 8887
Q ss_pred --ec--cccc-------cCChhHH-------HHHHHHHHHhCCCCcEEEEEec
Q 016366 291 --MK--WILH-------CWDDDHC-------LRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 291 --~~--~vlh-------~~~d~~~-------~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|+ .++. .|+.+++ .++|.++.+.|||||+|+-++=
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 33 1222 2332222 5799999999999998865443
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.013 Score=54.21 Aligned_cols=152 Identities=13% Similarity=0.202 Sum_probs=95.7
Q ss_pred HHHHHHHHhhc---cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc------hHHHhhCCC----------------
Q 016366 214 AMERILEHYEG---FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL------PHVVQDAPS---------------- 268 (390)
Q Consensus 214 ~~~~l~~~~~~---~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl------~~~~~~a~~---------------- 268 (390)
.++.+...+|. .....+||-=|||.|+++..++...+.+.+-.+.- .-++...+.
T Consensus 134 ii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~ 213 (369)
T KOG2798|consen 134 IIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNS 213 (369)
T ss_pred HHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccc
Confidence 34555555552 12346899999999999999998887766532220 111211110
Q ss_pred -----------------------CCCceEEECCCCC--CCCC---C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcE
Q 016366 269 -----------------------YAGVEHVGGNMFE--SVPE---G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGK 319 (390)
Q Consensus 269 -----------------------~~rv~~~~gd~~~--~~p~---~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ 319 (390)
.+..+...|||.+ ..+. . |+|+.++.+- ....+.+.|+.|++.|+|||.
T Consensus 214 ~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~GGv 291 (369)
T KOG2798|consen 214 LSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKPGGV 291 (369)
T ss_pred cccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccCCcE
Confidence 0224446699987 3333 2 9887776553 245578999999999999998
Q ss_pred EEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 320 VIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 320 lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
++=.-+..-.-.... +. ....+-+.+.+++..+.+.-||++++-..+.
T Consensus 292 WiNlGPLlYHF~d~~---------g~----~~~~siEls~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 292 WINLGPLLYHFEDTH---------GV----ENEMSIELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred EEeccceeeeccCCC---------CC----cccccccccHHHHHHHHHhcCcEEEEeeeee
Confidence 886555532211000 00 0012456789999999999999998876554
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0017 Score=63.05 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=41.1
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE 281 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~ 281 (390)
.++||++||+|.++..+++... +++++|. +.+++.++++ ++++++.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999998764 6777776 7788777652 478899888754
|
|
| >smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0014 Score=50.12 Aligned_cols=57 Identities=28% Similarity=0.402 Sum_probs=47.4
Q ss_pred HhChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcc
Q 016366 46 QLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (390)
Q Consensus 46 ~lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~ 108 (390)
-+.|++.|... +++|+.+||+.+++ +...+.|.|+.|+..|++... ..++.|++++.
T Consensus 7 ~~~Il~~l~~~~~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~--~~~~~y~l~~~ 64 (91)
T smart00346 7 GLAVLRALAEEPGGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQD--GQNGRYRLGPK 64 (91)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeec--CCCCceeecHH
Confidence 35678888775 68999999999999 999999999999999999863 23567887763
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.021 Score=54.16 Aligned_cols=101 Identities=14% Similarity=0.106 Sum_probs=75.1
Q ss_pred hccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEEC-CCCC-CCCCC--cEEEe
Q 016366 223 EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGG-NMFE-SVPEG--DAILM 291 (390)
Q Consensus 223 ~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~g-d~~~-~~p~~--D~i~~ 291 (390)
....++..|||==||||.++++...- ++++++.|+ ..|++-++.+ ....+..+ |+.. |+++. |.|++
T Consensus 193 a~v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIat 270 (347)
T COG1041 193 ARVKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIAT 270 (347)
T ss_pred hccccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEe
Confidence 33567789999999999999998765 577888888 7788887763 34445555 8888 88874 88876
Q ss_pred ccccccCC-------hhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 292 KWILHCWD-------DDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 292 ~~vlh~~~-------d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
.--..--+ ++-..++|..+.+.|++||++++.-+
T Consensus 271 DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 271 DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 53332211 45577899999999999999998555
|
|
| >smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0022 Score=46.22 Aligned_cols=60 Identities=17% Similarity=0.239 Sum_probs=49.1
Q ss_pred HHHHhChhHHHhhcCC--CCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 43 AAIQLGVFEIIAKAGE--LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 43 ~a~~lglfd~L~~~g~--~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
...+-.|++.|...|+ +|+.|||+.+|+ +...+.|.|..|...|+|...+. .+..|+++.
T Consensus 5 ~~~~~~IL~~L~~~g~~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~~-~~~~W~i~~ 66 (68)
T smart00550 5 DSLEEKILEFLENSGDETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQGG-TPPLWKLTD 66 (68)
T ss_pred hHHHHHHHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCC-CCCceEeec
Confidence 3456678899988776 999999999999 89999999999999999986421 336777654
|
Helix-turn-helix-containing domain. Also known as Zab. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0013 Score=53.99 Aligned_cols=69 Identities=14% Similarity=0.265 Sum_probs=49.9
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCC-C--cEEEeccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE-G--DAILMKWILH 296 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~-~--D~i~~~~vlh 296 (390)
.+..++|+|||.|-++.... -+..-.++++|+ |..++.++++ -.+++.+.|+.++.+. + |..+.+--+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 46789999999999983322 233446899998 9999998875 2578888888885443 3 7777665554
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0017 Score=62.51 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=76.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCC-CCCCC--cEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE-SVPEG--DAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~-~~p~~--D~i~~~~v 294 (390)
.+...++|+|||.|.....+..- .....+++|. +.-+.++.. ..+..++.+|+.+ ++++. |.+.+..+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 34558999999999998877653 3456677775 333333222 2445568889988 77765 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
..|.++.. .++++++++++|||.+++.+.+...
T Consensus 188 ~~~~~~~~--~~y~Ei~rv~kpGG~~i~~e~i~~~ 220 (364)
T KOG1269|consen 188 VCHAPDLE--KVYAEIYRVLKPGGLFIVKEWIKTA 220 (364)
T ss_pred cccCCcHH--HHHHHHhcccCCCceEEeHHHHHhh
Confidence 99999877 8899999999999999998877544
|
|
| >PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.00083 Score=45.65 Aligned_cols=44 Identities=32% Similarity=0.462 Sum_probs=38.1
Q ss_pred hChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 47 lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
+.|++.|..++ ++|+.|||+++|+ +...+.|+|..|+..|+|.+
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~ 50 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVER 50 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeec
Confidence 45778887754 6899999999999 99999999999999999985
|
One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D. |
| >PRK10141 DNA-binding transcriptional repressor ArsR; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0024 Score=51.16 Aligned_cols=68 Identities=24% Similarity=0.313 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcc
Q 016366 37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (390)
Q Consensus 37 ~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~ 108 (390)
...+|.--.++.|+..|...|+.++.||++.+++ .+..+.+.|+.|...|+|..........|++++.
T Consensus 9 ~fkaLadptRl~IL~~L~~~~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~~ 76 (117)
T PRK10141 9 LFKILSDETRLGIVLLLRESGELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDRKQGKWVHYRLSPH 76 (117)
T ss_pred HHHHhCCHHHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEEcCEEEEEECch
Confidence 4566777788999999976569999999999999 9999999999999999998643222334777653
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0021 Score=56.73 Aligned_cols=90 Identities=22% Similarity=0.296 Sum_probs=62.9
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCCCCC--cEEEecccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPEG--DAILMKWIL 295 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~p~~--D~i~~~~vl 295 (390)
.++.+|+|.-||.|.++..+++..+..+++..|+ |..++..++ .++|..+.+|..+-.+.. |-|++...-
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp~ 179 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLPE 179 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--TS
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECChH
Confidence 4678999999999999999999777788999998 777666554 267889999988743332 877765422
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEE
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~ll 321 (390)
. +..+|..+.+.+++||.+.
T Consensus 180 -----~-~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 180 -----S-SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -----S-GGGGHHHHHHHEEEEEEEE
T ss_pred -----H-HHHHHHHHHHHhcCCcEEE
Confidence 1 2367888999999998764
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.029 Score=51.07 Aligned_cols=105 Identities=13% Similarity=0.224 Sum_probs=74.7
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-----hHHHhhCCCC---CCceEEECCCCC-CCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-----PHVVQDAPSY---AGVEHVGGNMFE-SVP 284 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-----~~~~~~a~~~---~rv~~~~gd~~~-~~p 284 (390)
+.-|+..+. ..++.+|++-|.|+|.++.++++.- |.-+..-+|. ..+.+..+++ +++++..-|+-. -++
T Consensus 94 ia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 94 IAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 345677777 7889999999999999999999965 6667777776 2344444443 678888888765 233
Q ss_pred --C--CcEEEeccccccCChhHHHHHHHHHHHhCCCCc-EEEEEeccc
Q 016366 285 --E--GDAILMKWILHCWDDDHCLRILKNCYKAVPGNG-KVIVMNSIV 327 (390)
Q Consensus 285 --~--~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG-~lli~e~~~ 327 (390)
. +|.|++ ++|.++ ..+-.++++|+.+| +++...++.
T Consensus 173 ~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 173 IKSLKADAVFL-----DLPAPW--EAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred ccccccceEEE-----cCCChh--hhhhhhHHHhhhcCceEEeccHHH
Confidence 2 388765 456555 55777788888765 777766664
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.00087 Score=55.94 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=64.4
Q ss_pred CcceEEEEcCCccHH-HHHHHhhCCCCeEEEecc-hHHHhhCCC---------CCCceEEECCCCCC---CCCC--cEEE
Q 016366 227 NVERLVDVGGGFGVT-LSMITSKYPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFES---VPEG--DAIL 290 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~-~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~rv~~~~gd~~~~---~p~~--D~i~ 290 (390)
.+.+||++|+|.-.+ +..++...|+..+-..|- ...++..++ ..++..+..+.... ..+. |+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 347899999996554 445555667777777774 444443332 23444444444432 1122 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+..++. =++....+.+.|...|+|-|+-++..+-
T Consensus 109 aADClF--fdE~h~sLvdtIk~lL~p~g~Al~fsPR 142 (201)
T KOG3201|consen 109 AADCLF--FDEHHESLVDTIKSLLRPSGRALLFSPR 142 (201)
T ss_pred eccchh--HHHHHHHHHHHHHHHhCcccceeEecCc
Confidence 999984 3566678999999999999997765543
|
|
| >PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0015 Score=45.96 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=45.1
Q ss_pred HHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
..+|..-.++.|++.|...+|.|+.+||+.+|+ ++..+.+-|+.|...|+|+.
T Consensus 4 ~~aL~~p~R~~Il~~L~~~~~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~ 56 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLASNGPMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEV 56 (61)
T ss_dssp HHHHTSHHHHHHHHHHHHCSTBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHhCCHHHHHHHHHHhcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence 345566678889999954479999999999999 99999999999999999985
|
... |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.012 Score=50.40 Aligned_cols=102 Identities=18% Similarity=0.269 Sum_probs=63.3
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecchHHHhhCCCCCCceEEEC-CCCCC---------CCC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGG-NMFES---------VPE 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~rv~~~~g-d~~~~---------~p~ 285 (390)
++-+.+.-+++..+|||+||..|..+.-..++. |+-.+.++|+..... ...+.++++ |+.+| +|.
T Consensus 59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred eehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCC
Confidence 455555545778999999999999998888876 998999999743322 234555555 55443 232
Q ss_pred C--cEEEeccccccCC----------hhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 286 G--DAILMKWILHCWD----------DDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 286 ~--D~i~~~~vlh~~~----------d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
- |+|++.. .+.-+ -+-|..+|.-....+.|+|.+++-
T Consensus 135 r~VdvVlSDM-apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK 183 (232)
T KOG4589|consen 135 RPVDVVLSDM-APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK 183 (232)
T ss_pred CcccEEEecc-CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 1 6665432 22211 122444555555667788877763
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.00079 Score=55.75 Aligned_cols=54 Identities=24% Similarity=0.287 Sum_probs=43.2
Q ss_pred ceEEECCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 272 VEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 272 v~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
+.+++-...+ .+... |+|++.+++.|+.-++....++.|++.|||||+|-|.-+
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 4454443333 55543 999999999999999999999999999999999988543
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.03 Score=53.74 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=79.8
Q ss_pred cCCcceEEEEcCCccHHHHHHHhh--------C--------CCCeEEEecchH-----HHh---hC----CCCCC--ceE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSK--------Y--------PQIKAVNFDLPH-----VVQ---DA----PSYAG--VEH 274 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~--------~--------p~~~~~~~Dl~~-----~~~---~a----~~~~r--v~~ 274 (390)
.+..-+|+|+||.+|..+..+... + |.+.++.-|+|. ... .. ....+ +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 456679999999999887765432 2 345677778752 111 11 01122 456
Q ss_pred EECCCCC-CCCCC--cEEEeccccccCCh-------------------------hH------------HHHHHHHHHHhC
Q 016366 275 VGGNMFE-SVPEG--DAILMKWILHCWDD-------------------------DH------------CLRILKNCYKAV 314 (390)
Q Consensus 275 ~~gd~~~-~~p~~--D~i~~~~vlh~~~d-------------------------~~------------~~~~L~~~~~~L 314 (390)
++|.|.+ -+|.+ |++++++.||+++. +. ...+|+.=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 7899998 67876 99999999998751 11 223444445668
Q ss_pred CCCcEEEEEecccCCCCCcc------hHHhhhhhhhhhhhhhcC-------C--CcccCHHHHHHHHHHCC-CCeeEE
Q 016366 315 PGNGKVIVMNSIVPEIPEVS------SAARETSLLDVLLMTRDG-------G--GRERTKKEYTELAIAAG-FKGINF 376 (390)
Q Consensus 315 ~pgG~lli~e~~~~~~~~~~------~~~~~~~~~d~~~~~~~~-------~--g~~~t~~e~~~ll~~aG-f~~~~~ 376 (390)
+|||++++.-...++..... +..-...+.++.--.... + -..++.+|+++.+++.| |++.++
T Consensus 174 v~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~l 251 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKL 251 (334)
T ss_dssp EEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEE
T ss_pred ccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEE
Confidence 99999999887766521110 011111222221111000 0 12468999999999887 555443
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.001 Score=52.47 Aligned_cols=90 Identities=20% Similarity=0.263 Sum_probs=39.7
Q ss_pred EEEcCCccHHHHHHHhhCCCC---eEEEecc-h---HHHhhCCC---CCCceEEECCCCCC---CC-CC-cEEEeccccc
Q 016366 232 VDVGGGFGVTLSMITSKYPQI---KAVNFDL-P---HVVQDAPS---YAGVEHVGGNMFES---VP-EG-DAILMKWILH 296 (390)
Q Consensus 232 LDiG~G~G~~~~~l~~~~p~~---~~~~~Dl-~---~~~~~a~~---~~rv~~~~gd~~~~---~p-~~-D~i~~~~vlh 296 (390)
||||+..|..+..+++..+.. +++.+|. + ...+..++ .++++++.+|..+- ++ .. |+++.-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999988876554 5788887 4 23333332 36799999998652 33 23 8887665 22
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 297 CWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 297 ~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
..+.+..-|+.+.+.|+|||.+++.|
T Consensus 80 --~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 --SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred --CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 23556688999999999999888765
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.018 Score=60.91 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=72.4
Q ss_pred HHHHHHHHHhhcc-CCcceEEEEcCCccHHHHHHHhhC------------------------------------------
Q 016366 213 IAMERILEHYEGF-QNVERLVDVGGGFGVTLSMITSKY------------------------------------------ 249 (390)
Q Consensus 213 ~~~~~l~~~~~~~-~~~~~iLDiG~G~G~~~~~l~~~~------------------------------------------ 249 (390)
..+..++..-. | ++...++|-.||+|.++++.+...
T Consensus 176 tlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 176 NLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 34445554333 6 556899999999999999876521
Q ss_pred CCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCC-C---CcEEEecccccc-C-ChhHHHHHHHHHHHhC
Q 016366 250 PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP-E---GDAILMKWILHC-W-DDDHCLRILKNCYKAV 314 (390)
Q Consensus 250 p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p-~---~D~i~~~~vlh~-~-~d~~~~~~L~~~~~~L 314 (390)
...+++++|+ +.+++.|+.+ ++|++..+|+.+ +.+ . .|+|+++=-+.. + ...+...+.+.+.+.+
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~l 334 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRL 334 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHH
Confidence 1236788998 8888887753 468999999987 433 1 399988844322 1 2233444544444444
Q ss_pred C---CCcEEEEEec
Q 016366 315 P---GNGKVIVMNS 325 (390)
Q Consensus 315 ~---pgG~lli~e~ 325 (390)
+ ||+++++...
T Consensus 335 k~~~~g~~~~llt~ 348 (702)
T PRK11783 335 KQQFGGWNAALFSS 348 (702)
T ss_pred HHhCCCCeEEEEeC
Confidence 4 8887776544
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.012 Score=50.88 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=68.3
Q ss_pred hccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCCCcEEEeccccc
Q 016366 223 EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEGDAILMKWILH 296 (390)
Q Consensus 223 ~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~~D~i~~~~vlh 296 (390)
|+.-..++|||+|.|+|..++.-++..- ..++..|+ |..+..++-+ -.|.+...|...+-+..|+++...+++
T Consensus 75 PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy 153 (218)
T COG3897 75 PETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFY 153 (218)
T ss_pred ccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceec
Confidence 3356789999999999999988777642 23344444 5555544432 247777777765333349999999998
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 297 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 297 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
+.+..+ +++.-..+....|-.++|.|+-.+.
T Consensus 154 ~~~~a~--~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 154 NHTEAD--RLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred CchHHH--HHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 766544 7777444444456677776665544
|
|
| >PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0031 Score=41.95 Aligned_cols=45 Identities=18% Similarity=0.323 Sum_probs=39.1
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCccee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~ 93 (390)
.+..|+..|.++|++|..|||+++|+ ....+.+.++-|...|+++
T Consensus 4 ~~~~Il~~l~~~~~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLRENPRITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHCTTS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence 45678899998888999999999999 9999999999999999984
|
... |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.044 Score=49.07 Aligned_cols=150 Identities=15% Similarity=0.110 Sum_probs=92.1
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc--hHHHhhCCCCCCceEEEC-CCCC----CCCCC-c
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDAPSYAGVEHVGG-NMFE----SVPEG-D 287 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl--~~~~~~a~~~~rv~~~~g-d~~~----~~p~~-D 287 (390)
...++.+.-...+..+||||..||.|+..++++. .-+++++|. .......+..+||..+.. |+.. ++.+. |
T Consensus 68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCC
Confidence 4556666623467899999999999999999874 345677775 444445566677766554 5543 12222 7
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE-EecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV-MNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli-~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
++++.-.+ .....+|-.+...++|++-++. +-+.+.-.+. ....-=...-+.....-..++.+++
T Consensus 147 ~~v~DvSF-----ISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~---------~v~kkGvv~d~~~~~~v~~~i~~~~ 212 (245)
T COG1189 147 LIVIDVSF-----ISLKLILPALLLLLKDGGDLVLLVKPQFEAGRE---------QVGKKGVVRDPKLHAEVLSKIENFA 212 (245)
T ss_pred eEEEEeeh-----hhHHHHHHHHHHhcCCCceEEEEecchhhhhhh---------hcCcCceecCcchHHHHHHHHHHHH
Confidence 87766544 2245889999999999876554 3333322110 0000000000122334567889999
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
++.||++..+.+.+
T Consensus 213 ~~~g~~~~gl~~Sp 226 (245)
T COG1189 213 KELGFQVKGLIKSP 226 (245)
T ss_pred hhcCcEEeeeEccC
Confidence 99999999987665
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.00093 Score=56.80 Aligned_cols=63 Identities=17% Similarity=0.349 Sum_probs=42.1
Q ss_pred eEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC-------CCCceEEECCCCCC---CC--C-CcEEEecc
Q 016366 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFES---VP--E-GDAILMKW 293 (390)
Q Consensus 230 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-------~~rv~~~~gd~~~~---~p--~-~D~i~~~~ 293 (390)
.|+|+-||.|..++.+++.+..+.++.+| |..++.++. .++|+++++|+++. +. . .|+|+++=
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid-~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDID-PERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES--HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECC-HHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 69999999999999999998765444444 767776664 26899999999872 22 1 38887653
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0026 Score=61.58 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=41.6
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE 281 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~ 281 (390)
.++||++||+|.++..+++... +++++|. +.+++.++++ ++++++.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998874 6888887 7888877753 468888888764
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0016 Score=46.96 Aligned_cols=47 Identities=26% Similarity=0.293 Sum_probs=41.3
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.+..++..|-.+|+.|++|||+.+|+ +...+.+.|+-|...|+|...
T Consensus 9 ~E~~vy~~Ll~~~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~ 55 (68)
T PF01978_consen 9 NEAKVYLALLKNGPATAEEIAEELGI----SRSTVYRALKSLEEKGLVERE 55 (68)
T ss_dssp HHHHHHHHHHHHCHEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 45567777765589999999999999 999999999999999999874
|
TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A. |
| >PHA00738 putative HTH transcription regulator | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0047 Score=48.01 Aligned_cols=63 Identities=24% Similarity=0.217 Sum_probs=50.4
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
-.+..|++.|..++++++.+|++.+++ ..+.+++.|+.|...|+|..........|++++...
T Consensus 12 ptRr~IL~lL~~~e~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~srK~Gr~vyY~Ln~~~~ 74 (108)
T PHA00738 12 ILRRKILELIAENYILSASLISHTLLL----SYTTVLRHLKILNEQGYIELYKEGRTLYAKIRENSK 74 (108)
T ss_pred HHHHHHHHHHHHcCCccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEEEECCEEEEEECCCcc
Confidence 457788999988557999999999999 999999999999999999864322233577776544
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.012 Score=55.98 Aligned_cols=100 Identities=13% Similarity=0.187 Sum_probs=64.8
Q ss_pred cCCcceEEEEcCCccHHHHHHHhh-------CCCCeEEEecc-hHHHhhCCC--------CCCceEEECCCCC-CC-C--
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSK-------YPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFE-SV-P-- 284 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~-------~p~~~~~~~Dl-~~~~~~a~~--------~~rv~~~~gd~~~-~~-p-- 284 (390)
.....+|+|-+||+|.++.++.+. .+..++.++|+ +.++..++- .....+..+|.+. +. .
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456678999999999999998874 47778888887 555554432 1334688899876 32 2
Q ss_pred CC-cEEEeccccccC--C------------------hhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 285 EG-DAILMKWILHCW--D------------------DDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 285 ~~-D~i~~~~vlh~~--~------------------d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
.. |+|+++=-+-.. . ..+ ..++.++.+.|++||++.++-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAE-YAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHH-HHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchh-hhhHHHHHhhcccccceeEEec
Confidence 22 999876322211 1 111 2488999999999999776544
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0047 Score=44.23 Aligned_cols=58 Identities=19% Similarity=0.383 Sum_probs=40.5
Q ss_pred hChhHHHh-hcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCcc
Q 016366 47 LGVFEIIA-KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPV 108 (390)
Q Consensus 47 lglfd~L~-~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~ 108 (390)
+-++..|. ..++.+..+||+.+++ +...+.+.++-|...|+|+...+..++ .|++|+.
T Consensus 6 ~~vL~~l~~~~~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~ 67 (68)
T PF13463_consen 6 WQVLRALAHSDGPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPA 67 (68)
T ss_dssp HHHHHHHT--TS-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HH
T ss_pred HHHHHHHHccCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCC
Confidence 33455555 4469999999999999 999999999999999999765433233 4777764
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0061 Score=50.60 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=40.4
Q ss_pred eEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCC
Q 016366 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMF 280 (390)
Q Consensus 230 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~ 280 (390)
+++|||||.|.++..+++.+|+.+++.+|. |.+.+.+++. ++++++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 489999999999999999999989999997 6676655542 45777765554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.016 Score=53.71 Aligned_cols=96 Identities=17% Similarity=0.272 Sum_probs=57.7
Q ss_pred CcceEEEEcCCcc-HHHHHHHhh-CCCCeEEEecc-hHHHhhCCC--------CCCceEEECCCCC-C--CCCCcEEEec
Q 016366 227 NVERLVDVGGGFG-VTLSMITSK-YPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFE-S--VPEGDAILMK 292 (390)
Q Consensus 227 ~~~~iLDiG~G~G-~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~--------~~rv~~~~gd~~~-~--~p~~D~i~~~ 292 (390)
.+.+|+=||||.= ..+..++++ .++..++++|+ |+.++.+++ ..+++|+++|..+ . +.+.|+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 4569999999966 555566654 36788888888 777777654 2679999999876 3 2234999888
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
..... ..++..++|.++.+.++||+.+++-
T Consensus 200 alVg~-~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVGM-DAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhccc-ccchHHHHHHHHHhhCCCCcEEEEe
Confidence 77653 3334569999999999999988863
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0036 Score=41.47 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=38.6
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCccee
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~ 93 (390)
++.|...|.+ |+.++.||++.+++ ++..+.+.|+.|...|+|.
T Consensus 4 R~~Il~~L~~-~~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 4 RLRILKLLSE-GPLTVSELAEELGL----SQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp HHHHHHHHTT-SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHh-CCCchhhHHHhccc----cchHHHHHHHHHHHCcCee
Confidence 5667888888 79999999999999 9999999999999999986
|
One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B .... |
| >PRK15090 DNA-binding transcriptional regulator KdgR; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0068 Score=55.97 Aligned_cols=58 Identities=14% Similarity=0.275 Sum_probs=47.6
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+.|++.|...+++|+.|||+++|+ +...+.|+|+.|+..|+|.++ ...++|++.+...
T Consensus 17 l~IL~~l~~~~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~--~~~~~Y~lG~~~~ 74 (257)
T PRK15090 17 FGILQALGEEREIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQE--GESEKYSLTLKLF 74 (257)
T ss_pred HHHHHHhhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEEecHHHH
Confidence 445666665568999999999999 999999999999999999864 3457899987543
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.022 Score=58.28 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=44.1
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCC--------CeEEEecc-hHHHhhCCCC----C--CceEEECCCCCC-------CC
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQ--------IKAVNFDL-PHVVQDAPSY----A--GVEHVGGNMFES-------VP 284 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~--------~~~~~~Dl-~~~~~~a~~~----~--rv~~~~gd~~~~-------~p 284 (390)
...+|+|.|||+|.++..++.+.+. ..++++|+ +..++.++.. . .++...+|+... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999887642 45677787 6666655431 2 355566665431 11
Q ss_pred CC-cEEEec
Q 016366 285 EG-DAILMK 292 (390)
Q Consensus 285 ~~-D~i~~~ 292 (390)
.. |+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 22 999876
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.0098 Score=47.87 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=54.2
Q ss_pred HHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccccC
Q 016366 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVSN 115 (390)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~~~ 115 (390)
...++.++..|..+|++|..+||+.+++ +...+.+.++-|...|+|.+.....+. .+.+|+.+..+...
T Consensus 27 t~~q~~iL~~l~~~~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~~ 98 (118)
T TIGR02337 27 TEQQWRILRILAEQGSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYAS 98 (118)
T ss_pred CHHHHHHHHHHHHcCCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence 3445567778877789999999999999 999999999999999999875332232 48888887766643
|
This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate. |
| >PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0046 Score=43.01 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=40.8
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeeccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 97 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~ 97 (390)
++.++..|..+|++|..+||+.+++ ++..+.++++-|+..|++.+...
T Consensus 5 q~~iL~~l~~~~~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~~~ 52 (59)
T PF01047_consen 5 QFRILRILYENGGITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERERD 52 (59)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeccC
Confidence 4556667777789999999999999 99999999999999999987543
|
This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A .... |
| >PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0068 Score=42.54 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=40.1
Q ss_pred HHhChhHHHhhcCC--CCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecc
Q 016366 45 IQLGVFEIIAKAGE--LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (390)
Q Consensus 45 ~~lglfd~L~~~g~--~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~ 96 (390)
.++.++-.|...++ +|+.+||+.+++ ++..+.+.++.|+..|+|.+..
T Consensus 6 ~q~~vL~~l~~~~~~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 6 SQFRVLMALARHPGEELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHHHSTTSGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC
Confidence 34556777777655 899999999999 9999999999999999998753
|
... |
| >COG1414 IclR Transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.0083 Score=54.99 Aligned_cols=58 Identities=26% Similarity=0.379 Sum_probs=47.8
Q ss_pred hChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 47 lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+.|++.|...+ ++++.|||+++|+ ++..+.|+|..|+..|++..+ ..+++|++++..-
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d--~~~g~Y~Lg~~~~ 65 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQD--PEDGRYRLGPRLL 65 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEeehHHHH
Confidence 56788888742 4679999999999 999999999999999999974 3356899987543
|
|
| >PRK11512 DNA-binding transcriptional repressor MarR; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.039 Score=46.07 Aligned_cols=64 Identities=22% Similarity=0.164 Sum_probs=49.0
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
++.++-.|..++++|..+||+.+++ ++..+.++++-|+..|+|.+.....+++ ..+|+.+..+.
T Consensus 42 q~~vL~~l~~~~~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~ 108 (144)
T PRK11512 42 QFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHH
Confidence 3455667766678999999999999 9999999999999999998754333333 55666665544
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.063 Score=47.82 Aligned_cols=99 Identities=17% Similarity=0.259 Sum_probs=70.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhh-------CCCCCCceEEECCCCCCCC----C---C--
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQD-------APSYAGVEHVGGNMFESVP----E---G-- 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~-------a~~~~rv~~~~gd~~~~~p----~---~-- 286 (390)
.-++++++|||.=+|..+..++.+.|. -+++.+|+ +...+. |.-...|+++.++..+.++ . +
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 456799999999999999999998875 56777776 434333 3334789999998876322 2 2
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
|.++... |.+. ....+.++.+.+|+||.|++-....+
T Consensus 151 DfaFvDa----dK~n-Y~~y~e~~l~Llr~GGvi~~DNvl~~ 187 (237)
T KOG1663|consen 151 DFAFVDA----DKDN-YSNYYERLLRLLRVGGVIVVDNVLWP 187 (237)
T ss_pred eEEEEcc----chHH-HHHHHHHHHhhcccccEEEEeccccC
Confidence 7766432 4444 44899999999999998765443433
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.043 Score=48.42 Aligned_cols=100 Identities=15% Similarity=0.200 Sum_probs=56.0
Q ss_pred CcceEEEEcCCccHHHHHHH---hhC-CCCeEEEecc--hHHHhhCCCC----CCceEEECCCCCC-----CC----CC-
Q 016366 227 NVERLVDVGGGFGVTLSMIT---SKY-PQIKAVNFDL--PHVVQDAPSY----AGVEHVGGNMFES-----VP----EG- 286 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~---~~~-p~~~~~~~Dl--~~~~~~a~~~----~rv~~~~gd~~~~-----~p----~~- 286 (390)
++..|+++|.-.|..+..++ +.+ ++.+++++|+ ...-..+.+. +||++++||-.++ +. ..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 46899999998887766554 444 7788888887 2332333333 8999999998653 11 12
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
-++++-..=|.+.. +.+.|+.....++||++++|-|....
T Consensus 112 ~vlVilDs~H~~~h--vl~eL~~y~plv~~G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 112 PVLVILDSSHTHEH--VLAELEAYAPLVSPGSYLIVEDTIIE 151 (206)
T ss_dssp SEEEEESS----SS--HHHHHHHHHHT--TT-EEEETSHHHH
T ss_pred ceEEEECCCccHHH--HHHHHHHhCccCCCCCEEEEEecccc
Confidence 33445555555443 56889999999999999998777643
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.1 Score=48.59 Aligned_cols=143 Identities=13% Similarity=0.192 Sum_probs=98.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC--CCCeEEEecchHHHhhCCC----C------------------------CCceE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDLPHVVQDAPS----Y------------------------AGVEH 274 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~Dl~~~~~~a~~----~------------------------~rv~~ 274 (390)
.+...+|+.+|||.=.....+...+ ++++++.+|.|.++++--. . ++...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4567899999999999999999987 8889999998877654221 0 23445
Q ss_pred EECCCCC--CC----CC-----C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhh
Q 016366 275 VGGNMFE--SV----PE-----G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETS 341 (390)
Q Consensus 275 ~~gd~~~--~~----p~-----~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~ 341 (390)
+..|..+ .+ .. . -+++.-=+|-++++++...+++.+.+..+ .+.+++.|.+.+.++-.
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D~Fg-------- 235 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPNDRFG-------- 235 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCChHH--------
Confidence 5555553 11 11 1 35566678888999999999999999885 56678899987665321
Q ss_pred hhhhhhhhhcC--------CCcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 342 LLDVLLMTRDG--------GGRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 342 ~~d~~~~~~~~--------~g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
-.|..++. --...|.+..++-+.++||+-+.+..+
T Consensus 236 ---~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 236 ---KVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred ---HHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 12222110 112357888888999999998877554
|
|
| >PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.0058 Score=45.58 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=47.4
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc----ceecCcccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER----LYALNPVSK 110 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~----~y~~t~~s~ 110 (390)
++++|...|...+.++..+|.+.+++ +...|.+.|+.|...|+|.......++ .|++|+.+.
T Consensus 1 vRl~Il~~L~~~~~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr 66 (80)
T PF13601_consen 1 VRLAILALLYANEEATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGR 66 (80)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHH
T ss_pred CHHHHHHHHhhcCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHH
Confidence 46788888887679999999999999 999999999999999999864332222 277777665
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.057 Score=47.09 Aligned_cols=85 Identities=15% Similarity=0.267 Sum_probs=62.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC---------CCceEEECCCCC-CC----C------C
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY---------AGVEHVGGNMFE-SV----P------E 285 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~---------~rv~~~~gd~~~-~~----p------~ 285 (390)
++...|+.+|||-=.....+....++++++.+|+|++++.-++. .+++++..|+.+ .+ . .
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 34559999999999999999988889999999999988765542 236789999986 21 1 1
Q ss_pred C-cEEEeccccccCChhHHHHHHHHH
Q 016366 286 G-DAILMKWILHCWDDDHCLRILKNC 310 (390)
Q Consensus 286 ~-D~i~~~~vlh~~~d~~~~~~L~~~ 310 (390)
. -++++-.++.+++++++..+|+.+
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 2 688888999999999999998876
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PRK11569 transcriptional repressor IclR; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.014 Score=54.50 Aligned_cols=58 Identities=21% Similarity=0.270 Sum_probs=47.5
Q ss_pred hChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 47 lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+.|++.|.+. +++|+.|||+++|+ +..-+.|+|..|+..|+|..+ .+.++|++.+...
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~--~~~~~Y~lG~~l~ 89 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQV--GELGHWAIGAHAF 89 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCeEecCHHHH
Confidence 4566666653 48999999999999 999999999999999999864 3467899986543
|
|
| >PRK10163 DNA-binding transcriptional repressor AllR; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.014 Score=54.34 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=47.3
Q ss_pred hChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 47 lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
+.|++.|..+ +++|+.|||+++|+ ++..+.|+|..|+..|+|..+ ...++|+++...
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~--~~~~~Y~lG~~l 85 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQD--SQLGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCeEEecHHH
Confidence 4567777654 47999999999999 999999999999999999864 346789988644
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.016 Score=52.45 Aligned_cols=100 Identities=14% Similarity=0.211 Sum_probs=65.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCCC--cEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEG--DAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~~--D~i~~~~vlh~ 297 (390)
..+.+|+|||||.-=++.-.....|+.+++++|+ ...++..... .+.+....|.....|.. |+.++.-++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 4578999999999999988888889999999998 6666665542 56777788998865543 99999999998
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
+..+.. ..--++-+.++ .-.++|+.+..
T Consensus 184 le~q~~-g~g~~ll~~~~-~~~~vVSfPtr 211 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALR-SPHVVVSFPTR 211 (251)
T ss_dssp HHHHST-THHHHHHHHSC-ESEEEEEEES-
T ss_pred HHHHhc-chHHHHHHHhC-CCeEEEecccc
Confidence 765543 23233334443 23556655553
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.014 Score=45.50 Aligned_cols=44 Identities=23% Similarity=0.331 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL 259 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl 259 (390)
+.+.-+.+.+. ......++|||||+|.+.--|.+. +.++.++|.
T Consensus 45 yLi~LW~~~~~-~~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 45 YLIELWRDMYG-EQKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred HHHHHHhcccC-CCCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 33333334443 345678999999999999888876 456888883
|
; GO: 0008168 methyltransferase activity |
| >TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.014 Score=53.55 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=47.2
Q ss_pred hChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 47 lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+.|++.|... +++|+.|||+++|+ ++..+.|+|..|+..|+|.. ++++|++.+...
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~----~~~~Y~lG~~~~ 68 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTS----DGRLFWLTPRVL 68 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe----CCCEEEecHHHH
Confidence 5577777653 48999999999999 99999999999999999984 457899987543
|
Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. |
| >PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.023 Score=42.62 Aligned_cols=48 Identities=29% Similarity=0.386 Sum_probs=38.4
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
++|.++||+++++ ++..+++++..|...|+|.... ..++.|.+++..+
T Consensus 25 ~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~~-G~~GGy~L~~~~~ 72 (83)
T PF02082_consen 25 PVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESSR-GRGGGYRLARPPE 72 (83)
T ss_dssp -BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEET-STTSEEEESS-CC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEecC-CCCCceeecCCHH
Confidence 6999999999999 9999999999999999997542 2457788876443
|
(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C. |
| >PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.0071 Score=44.75 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=43.3
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccccccc
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~ 114 (390)
|+..+.. |+.+..+|+..+++ +...+.++|+.|...|+|. ..++.|++|+.+..+..
T Consensus 11 IL~~l~~-~~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~----~~~~~Y~lTekG~~~l~ 67 (77)
T PF14947_consen 11 ILKILSK-GGAKKTEIMYKANL----NYSTLKKYLKELEEKGLIK----KKDGKYRLTEKGKEFLE 67 (77)
T ss_dssp HHHHH-T-T-B-HHHHHTTST------HHHHHHHHHHHHHTTSEE----EETTEEEE-HHHHHHHH
T ss_pred HHHHHHc-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCee----CCCCEEEECccHHHHHH
Confidence 3444543 69999999999999 9999999999999999997 46789999999886663
|
|
| >PRK09834 DNA-binding transcriptional activator MhpR; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.016 Score=53.75 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=49.1
Q ss_pred hChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 47 lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
+.|++.|..++ ++|..|||+++|+ +...+.|+|+.|+..|+|.++ .+++.|++++....+.
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~--~~~~~Y~Lg~~~~~l~ 75 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRS--ASDDSFRLTLKVRQLS 75 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe--cCCCcEEEcHHHHHHH
Confidence 45667776543 6999999999999 999999999999999999864 3467899987554333
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.023 Score=53.02 Aligned_cols=99 Identities=19% Similarity=0.305 Sum_probs=71.2
Q ss_pred cceEEEEcCCccHHHHHHHhhC--------------------CCCeEEEecc---hHHHhhCCC----C-----------
Q 016366 228 VERLVDVGGGFGVTLSMITSKY--------------------PQIKAVNFDL---PHVVQDAPS----Y----------- 269 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~--------------------p~~~~~~~Dl---~~~~~~a~~----~----------- 269 (390)
..+||-||||.|.-..+++..+ +.++++.+|+ ..+++.... .
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999997766666554 2257888887 456654322 0
Q ss_pred --------CCceEEECCCCC-CCC-------C-C-cEEEeccccccC---ChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 270 --------AGVEHVGGNMFE-SVP-------E-G-DAILMKWILHCW---DDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 270 --------~rv~~~~gd~~~-~~p-------~-~-D~i~~~~vlh~~---~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
-+++|.+.|+.+ ..+ . . ++|.+.++++.+ +-.+-.++|.++-..++||..|+|+|.-
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 147899999987 321 1 2 888777776653 3455678999999999999999998864
|
|
| >cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.041 Score=39.05 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
+++|..+||+.+|+ .+..+.+.|+.|...|+|... ..+.|.+++
T Consensus 24 ~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~~---~~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL----TRETVSRTLKELEEEGLISRR---GRGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec---CCCeEEeCC
Confidence 58999999999999 999999999999999999852 236777654
|
|
| >PRK10857 DNA-binding transcriptional regulator IscR; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.028 Score=48.09 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
+++|+++||+++++ ++..+.++|..|...|+|...+ ..+|.|.+....
T Consensus 24 ~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~r-G~~GGy~Lar~p 71 (164)
T PRK10857 24 GPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSVR-GPGGGYLLGKDA 71 (164)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC-CCCCCeeccCCH
Confidence 48999999999999 9999999999999999998632 345678877643
|
|
| >smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.029 Score=43.23 Aligned_cols=65 Identities=25% Similarity=0.341 Sum_probs=48.2
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC---cceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~---~~y~~t~~s~~l~ 113 (390)
.++.++..|..+|+.|..+||+.+++ ++..+.+.++-|+..|+|.......+ ..|.+|+.+..+.
T Consensus 11 ~~~~il~~l~~~~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 11 TQFLVLRILYEEGPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence 35667888877678999999999999 99999999999999999986321111 1355555554433
|
|
| >COG3355 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.026 Score=45.46 Aligned_cols=46 Identities=22% Similarity=0.347 Sum_probs=39.8
Q ss_pred HhChhHHHh-hcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 46 QLGVFEIIA-KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 46 ~lglfd~L~-~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+..+|.+|- .+||.|+++||+.++. +...+.+-|+-|...|+|.+.
T Consensus 29 Dv~v~~~LL~~~~~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~Re 75 (126)
T COG3355 29 DVEVYKALLEENGPLTVDELAEILNR----SRSTVYRSLQNLLEAGLVERE 75 (126)
T ss_pred HHHHHHHHHhhcCCcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCeeee
Confidence 445566665 5689999999999999 999999999999999999874
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.072 Score=51.82 Aligned_cols=90 Identities=11% Similarity=0.105 Sum_probs=67.9
Q ss_pred ceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCC---C-CcEEEeccccc
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP---E-GDAILMKWILH 296 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p---~-~D~i~~~~vlh 296 (390)
.+|||+-||+|..+.+++.+.++ -+++..|+ |..++.++++ .+++++.+|+..-+. . .|+|.+.= ++
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence 58999999999999999998654 46888888 7777776652 357888898876322 2 39987754 32
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 297 CWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 297 ~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.+. .+|..+.+.+++||.|++.-
T Consensus 125 -s~~----~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 125 -TPA----PFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -CcH----HHHHHHHHhcccCCEEEEEe
Confidence 222 67889999999999999873
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.016 Score=41.90 Aligned_cols=42 Identities=19% Similarity=0.380 Sum_probs=36.0
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
|-+.|..+|.+|..+||.++++ ++..++.+|+.|+..|.|.+
T Consensus 5 i~~~l~~~~~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~ 46 (69)
T PF09012_consen 5 IRDYLRERGRVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRK 46 (69)
T ss_dssp HHHHHHHS-SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEE
T ss_pred HHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE
Confidence 5677888789999999999999 99999999999999999985
|
FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A. |
| >smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.022 Score=37.42 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=35.2
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceec
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~ 105 (390)
++|..+||+.+++ .+..+.+.|+.|...|++.. ..+.|..
T Consensus 8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~----~~~~~~i 47 (48)
T smart00419 8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISR----EGGRIVI 47 (48)
T ss_pred ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE----eCCEEEE
Confidence 7899999999999 99999999999999999984 3466654
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.13 Score=49.16 Aligned_cols=97 Identities=21% Similarity=0.231 Sum_probs=75.4
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCC---CCcEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP---EGDAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p---~~D~i~~~~v 294 (390)
..+.+|||.=+|.|-++..+++...- +++.+|+ |..++..+++ ++|+.+.||..+-.+ .+|-|++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 35789999999999999999987643 3888888 8887766652 458899999988333 3599888765
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
- + ..+++..+.+.+++||.+...+.+..+
T Consensus 266 ~----~--a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 266 K----S--AHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred C----c--chhhHHHHHHHhhcCcEEEEEeccchh
Confidence 3 1 237788888899999999998888654
|
|
| >PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.033 Score=38.55 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=39.5
Q ss_pred ChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 48 glfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.|.+.|..+|.+|+++||+.+++ .+.-++|=|..|...|++.+
T Consensus 4 ~Il~~l~~~~~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r 46 (57)
T PF08220_consen 4 QILELLKEKGKVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKR 46 (57)
T ss_pred HHHHHHHHcCCEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 36778888789999999999999 99999999999999999986
|
This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular |
| >COG2345 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.031 Score=49.65 Aligned_cols=61 Identities=30% Similarity=0.447 Sum_probs=48.3
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC-c----ceecCccccc
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE-R----LYALNPVSKY 111 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~-~----~y~~t~~s~~ 111 (390)
-.|...|.++||+|+.|||+++|+ ++..+++.|+.|++.|+|+......+ | .|++|..+..
T Consensus 14 ~~il~lL~~~g~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 14 ERILELLKKSGPVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHHHhccCCccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchh
Confidence 346667777789999999999999 99999999999999999976422111 1 3888887664
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.02 Score=49.90 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=62.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCC------CCC-cEEEe
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV------PEG-DAILM 291 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~------p~~-D~i~~ 291 (390)
.+.++||+=||+|.++.+.+.+.- .+++.+|. +..++..+++ ++++.+..|.+..+ ... |+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 468999999999999999998863 46777776 5555555542 46889999976522 223 99988
Q ss_pred ccccccCChhHHHHHHHHHH--HhCCCCcEEEEEecc
Q 016366 292 KWILHCWDDDHCLRILKNCY--KAVPGNGKVIVMNSI 326 (390)
Q Consensus 292 ~~vlh~~~d~~~~~~L~~~~--~~L~pgG~lli~e~~ 326 (390)
.=-...... ..++|..+. ..|+++|.+++ |.-
T Consensus 121 DPPY~~~~~--~~~~l~~l~~~~~l~~~~~ii~-E~~ 154 (183)
T PF03602_consen 121 DPPYAKGLY--YEELLELLAENNLLNEDGLIII-EHS 154 (183)
T ss_dssp --STTSCHH--HHHHHHHHHHTTSEEEEEEEEE-EEE
T ss_pred CCCcccchH--HHHHHHHHHHCCCCCCCEEEEE-Eec
Confidence 755433211 346777776 78888886554 443
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.04 Score=45.53 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+++|+++||+.+++ ++..++++|+.|...|+|...+ ..+|.|.++....
T Consensus 24 ~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~~-G~~Ggy~l~~~~~ 72 (135)
T TIGR02010 24 GPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSVR-GPGGGYQLGRPAE 72 (135)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEe-CCCCCEeccCCHH
Confidence 48999999999999 9999999999999999997532 2456788776433
|
This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.061 Score=50.59 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=54.0
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE 281 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~ 281 (390)
..++++.+. ..++..++|.=+|.|..+..++++.|+.+++++|. +.+++.+++. .|++++.++|.+
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 456777776 56677999999999999999999988789999998 8888877652 478888888764
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.03 Score=49.37 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=44.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE 281 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~ 281 (390)
....|+|.-||.|..++.++.++|.+-.+.+| |--+..|+.+ +||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiD-PikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDID-PVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEecc-HHHHHHHhccceeecCCceeEEEechHHH
Confidence 56789999999999999999999876555555 7667776653 699999999986
|
|
| >PRK11050 manganese transport regulator MntR; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.12 Score=43.61 Aligned_cols=81 Identities=20% Similarity=0.248 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC
Q 016366 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (390)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~ 100 (390)
+.+.++.+.........-..+. -|...+...++.+..+||+.+++ ++..+.++++.|...|+|... ..
T Consensus 19 ~~~~~~~~~~~~~~~~~e~~l~-----~I~~~l~~~~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~---~~ 86 (152)
T PRK11050 19 HVEGFRQVREAHRRELIEDYVE-----LIADLIAEVGEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMR---PY 86 (152)
T ss_pred hHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHhcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe---cC
Confidence 3345555554444333333332 35556665568999999999999 999999999999999999862 33
Q ss_pred cceecCccccccc
Q 016366 101 RLYALNPVSKYFV 113 (390)
Q Consensus 101 ~~y~~t~~s~~l~ 113 (390)
..+++|+.+..+.
T Consensus 87 ~~v~LT~~G~~l~ 99 (152)
T PRK11050 87 RGVFLTPEGEKLA 99 (152)
T ss_pred CceEECchHHHHH
Confidence 4567777665443
|
|
| >PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.024 Score=39.81 Aligned_cols=43 Identities=26% Similarity=0.248 Sum_probs=36.8
Q ss_pred ChhHHHhh-cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 48 GVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 48 glfd~L~~-~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.|.+.|.. ++|++..|||+.+|+ +....+++|..|...|.|..
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~ 47 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADALGL----SIYQARYYLEKLEKEGKVER 47 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEE
Confidence 46777776 579999999999999 99999999999999999985
|
|
| >TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.033 Score=44.13 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=49.4
Q ss_pred HHHHhChhHHHh----hcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 43 AAIQLGVFEIIA----KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 43 ~a~~lglfd~L~----~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
...++.++..|. .+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+.+ +.+|+.+..+.
T Consensus 24 s~~q~~vL~~l~~~~~~~~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 24 SLEELLILYYLGKLENNEGKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSKI 97 (109)
T ss_pred CHHHHHHHHHHHhhhccCCcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHHH
Confidence 344555666666 3368999999999999 9999999999999999998754433333 45666555443
|
This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.073 Score=51.86 Aligned_cols=99 Identities=11% Similarity=0.104 Sum_probs=72.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCCCCC----CC---cEEE
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESVP----EG---DAIL 290 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~~~p----~~---D~i~ 290 (390)
.+.+|||+=|=||.++...+... ..++|.+|+ ..+++.|+++ .+++++++|.++.+. .+ |+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 47899999999999999988764 237888888 7788887763 468999999987332 22 9997
Q ss_pred ecc------ccccCC-hhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 291 MKW------ILHCWD-DDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 291 ~~~------vlh~~~-d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+.= -=.-|. ..+-.+++..+.+.|+|||.++++...
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 641 111111 233557899999999999999886654
|
|
| >PRK03902 manganese transport transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.036 Score=46.17 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=45.4
Q ss_pred HHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 52 IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 52 ~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
.+..+|+.++.+||+.+++ .+..+.+.++.|...|+|.. ...+.|++|+.+..+.
T Consensus 16 l~~~~~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~---~~~~~i~LT~~G~~~a 70 (142)
T PRK03902 16 LIEEKGYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIY---EKYRGLVLTPKGKKIG 70 (142)
T ss_pred HHhcCCCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEE---ecCceEEECHHHHHHH
Confidence 3444578999999999999 99999999999999999985 2346788998876543
|
|
| >smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.064 Score=37.33 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=36.3
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
|+..|. .++.|..+|++.+++ +...+.+.|+.|...|++...
T Consensus 2 il~~l~-~~~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~ 43 (66)
T smart00418 2 ILKLLA-EGELCVCELAEILGL----SQSTVSHHLKKLREAGLVESR 43 (66)
T ss_pred HHHHhh-cCCccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence 455565 369999999999999 899999999999999999853
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.068 Score=50.30 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=48.1
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMF 280 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~ 280 (390)
..++++.+. ..+...++|.=-|.|.++.++++++|+.+++++|. |.+++.++++ +|+.++.++|.
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 456777776 67778999999999999999999999999999998 8888877653 57777777654
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.051 Score=48.28 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=48.9
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeeccc-CCCc----ceecCccccccc
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-GGER----LYALNPVSKYFV 113 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~-~~~~----~y~~t~~s~~l~ 113 (390)
..|+..|...|++|..+||+++++ ++..+.+.|+.|...|+|.+... ...+ .|++|+.+....
T Consensus 4 ~~IL~~L~~~~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~ 71 (203)
T TIGR02702 4 EDILSYLLKQGQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF 71 (203)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence 457777876679999999999999 99999999999999999986411 0112 267887766544
|
All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus. |
| >smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.065 Score=35.80 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=37.2
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
+++.|..++++|+.+|++.+++ .+..+.+.|+.|...|++..
T Consensus 5 il~~l~~~~~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~ 46 (53)
T smart00420 5 ILELLAQQGKVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTR 46 (53)
T ss_pred HHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 4556665568999999999999 99999999999999999985
|
|
| >TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator) | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.075 Score=43.52 Aligned_cols=49 Identities=27% Similarity=0.331 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+++|.++||+.+++ ++..+.++|+.|+..|+|.... ..++.|.++....
T Consensus 24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~~-g~~ggy~l~~~~~ 72 (132)
T TIGR00738 24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESVR-GPGGGYRLARPPE 72 (132)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecc-CCCCCccCCCCHH
Confidence 48999999999999 9999999999999999997532 2345787765443
|
This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. |
| >TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.071 Score=47.34 Aligned_cols=59 Identities=27% Similarity=0.355 Sum_probs=47.6
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~ 108 (390)
.++.++..|.++|+.+..+||+++++ ++..+.+.|..|...|++.+... ....|.+|+.
T Consensus 144 ~~~~IL~~l~~~g~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~~-r~~~~~lT~~ 202 (203)
T TIGR01884 144 EELKVLEVLKAEGEKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKGR-KGKRYSLTKL 202 (203)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEcC-CccEEEeCCC
Confidence 34567777777678999999999999 99999999999999999987421 3456777764
|
Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.4 Score=46.30 Aligned_cols=109 Identities=16% Similarity=0.144 Sum_probs=71.6
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCC---------------------------------------eEE
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI---------------------------------------KAV 255 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~---------------------------------------~~~ 255 (390)
+..++.. .+|.+...++|==||+|.++++.+...+++ ..+
T Consensus 180 AaAil~l-agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 180 AAAILLL-AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHH-cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 3344433 347777899999999999999988877542 256
Q ss_pred Eecc-hHHHhhCCCC-------CCceEEECCCCC-CCC-C-CcEEEecccccc-CChh-HHH----HHHHHHHHhCCCCc
Q 016366 256 NFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP-E-GDAILMKWILHC-WDDD-HCL----RILKNCYKAVPGNG 318 (390)
Q Consensus 256 ~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p-~-~D~i~~~~vlh~-~~d~-~~~----~~L~~~~~~L~pgG 318 (390)
++|+ +.+++.|+.+ +.|+|.++|+.. .-| . .|+|+++=-... +.++ .+. .+.+.+++.++.-+
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 8887 8888888763 569999999976 333 3 399998744332 2222 122 34445556666556
Q ss_pred EEEEEe
Q 016366 319 KVIVMN 324 (390)
Q Consensus 319 ~lli~e 324 (390)
+.+++.
T Consensus 339 ~~v~tt 344 (381)
T COG0116 339 RYVFTT 344 (381)
T ss_pred eEEEEc
Confidence 666643
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.051 Score=53.87 Aligned_cols=99 Identities=22% Similarity=0.225 Sum_probs=64.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCC---CC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VP- 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~---~p- 284 (390)
....+.+. ..+..+++|+=||.|.++..++++.. +++++++ +++++.|+++ ++++|..+|.++- ..
T Consensus 283 ~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 283 ETALEWLE-LAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHHh-hcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc
Confidence 34445554 55678999999999999999997654 4566665 7777777652 6799999998872 21
Q ss_pred -CC-cEEEeccccccCChhHHH-HHHHHHHHhCCCCcEEEEE
Q 016366 285 -EG-DAILMKWILHCWDDDHCL-RILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 285 -~~-D~i~~~~vlh~~~d~~~~-~~L~~~~~~L~pgG~lli~ 323 (390)
.. |.|+..= |..=+. .+++.+. .++|...++|+
T Consensus 360 ~~~~d~VvvDP-----PR~G~~~~~lk~l~-~~~p~~IvYVS 395 (432)
T COG2265 360 GYKPDVVVVDP-----PRAGADREVLKQLA-KLKPKRIVYVS 395 (432)
T ss_pred cCCCCEEEECC-----CCCCCCHHHHHHHH-hcCCCcEEEEe
Confidence 12 7776532 211122 4455544 45566767764
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.11 Score=46.08 Aligned_cols=98 Identities=22% Similarity=0.301 Sum_probs=69.6
Q ss_pred HHhhccCCcceEEEEcCCccHHHHHHHhhCCC------C---eEEEecchHHHhhCCCCCCceEEECCCCCC--------
Q 016366 220 EHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ------I---KAVNFDLPHVVQDAPSYAGVEHVGGNMFES-------- 282 (390)
Q Consensus 220 ~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~------~---~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~-------- 282 (390)
+.+.-+.+..|++|+....|+.+.-+.++.-. - +++.+|+..|... +.|.-+++|+.++
T Consensus 34 eef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 34 EEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----EGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----CceEEeecccCCHhHHHHHHH
Confidence 33433567789999999999998888776421 1 2789998777653 5688899999763
Q ss_pred -CC--CCcEEEecc-----ccccCCh----hHHHHHHHHHHHhCCCCcEEE
Q 016366 283 -VP--EGDAILMKW-----ILHCWDD----DHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 283 -~p--~~D~i~~~~-----vlh~~~d----~~~~~~L~~~~~~L~pgG~ll 321 (390)
+. .+|+|+|.. -+|++.+ +-....|.-...+|+|||.++
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 22 239999875 4776642 224456777788999999977
|
|
| >COG1959 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.058 Score=45.42 Aligned_cols=48 Identities=23% Similarity=0.314 Sum_probs=41.3
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+.|+++||++.++ ++..|.++|..|...|+|+..+ ..+|.|++++...
T Consensus 25 ~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~r-G~~GGy~Lar~~~ 72 (150)
T COG1959 25 PVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSVR-GKGGGYRLARPPE 72 (150)
T ss_pred cccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEeec-CCCCCccCCCChH
Confidence 7899999999999 9999999999999999998643 3467888887544
|
|
| >cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.092 Score=37.74 Aligned_cols=56 Identities=21% Similarity=0.382 Sum_probs=42.0
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
..|+..+... +.+..+|++.+++ +...+.+.|+.|.+.|++..........|+.++
T Consensus 10 ~~il~~l~~~-~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~ 65 (78)
T cd00090 10 LRILRLLLEG-PLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESRREGRRVYYSLTD 65 (78)
T ss_pred HHHHHHHHHC-CcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEEEeccEEEEEeCC
Confidence 3456666664 5999999999999 999999999999999999863221223455554
|
ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions. |
| >PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.076 Score=36.04 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=35.2
Q ss_pred HHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHH
Q 016366 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRL 85 (390)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~ 85 (390)
-.+|.+|++.|-||. .. ..|.+|||+.+|+ .+..+...||-
T Consensus 6 ~e~L~~A~~~GYfd~-PR--~~tl~elA~~lgi----s~st~~~~LRr 46 (53)
T PF04967_consen 6 REILKAAYELGYFDV-PR--RITLEELAEELGI----SKSTVSEHLRR 46 (53)
T ss_pred HHHHHHHHHcCCCCC-CC--cCCHHHHHHHhCC----CHHHHHHHHHH
Confidence 468999999999998 43 6899999999999 88887777774
|
This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator. |
| >PRK06266 transcription initiation factor E subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.13 Score=44.48 Aligned_cols=44 Identities=25% Similarity=0.346 Sum_probs=40.6
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
..|++.|..+|++|.++||..+|+ ....++++|..|...|++..
T Consensus 25 ~~Vl~~L~~~g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~ 68 (178)
T PRK06266 25 FEVLKALIKKGEVTDEEIAEQTGI----KLNTVRKILYKLYDARLADY 68 (178)
T ss_pred hHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence 448899988789999999999999 99999999999999999984
|
|
| >PRK11920 rirA iron-responsive transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.1 Score=44.08 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=40.5
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
++|+.+||++.++ ++..|+++|..|...|+|.... ...|.|+++....
T Consensus 24 ~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~r-G~~GGy~La~~p~ 71 (153)
T PRK11920 24 LSRIPEIARAYGV----SELFLFKILQPLVEAGLVETVR-GRNGGVRLGRPAA 71 (153)
T ss_pred cCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec-CCCCCeeecCCHH
Confidence 7899999999999 9999999999999999998643 3457788876433
|
|
| >COG4190 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.11 Score=41.85 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 23 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.+|+.++++.. --.+.++..|+..+|.|+.|+|++.|- +...+.|-|+.|...|++..+
T Consensus 53 ~Sye~la~vLs----------p~nleLl~~Ia~~~P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe 111 (144)
T COG4190 53 TSYEDLARVLS----------PRNLELLELIAQEEPASINELAELVGR----DVKNVHRTLSTLADLGLIFFE 111 (144)
T ss_pred ccHHHHHHHhC----------hhHHHHHHHHHhcCcccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence 55666555443 345677888888789999999999999 999999999999999999863
|
|
| >PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.084 Score=37.56 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=30.5
Q ss_pred hhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 54 AKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 54 ~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.++| |.|+.|||+.+|+. .+..+.+.|+.|...|++.+
T Consensus 20 ~~~G~~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r 58 (65)
T PF01726_consen 20 EENGYPPTVREIAEALGLK---STSTVQRHLKALERKGYIRR 58 (65)
T ss_dssp HHHSS---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEE
T ss_pred HHcCCCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccC
Confidence 3346 88999999999992 48899999999999999986
|
The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.35 Score=40.02 Aligned_cols=106 Identities=16% Similarity=0.228 Sum_probs=68.8
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCC-CCCCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE-SVPEG 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~-~~p~~ 286 (390)
+.+++.++ .++.++.+|+|.|.|....+.++.. -...+++++ |-.+...+- ..+.+|..-|+++ ++.+.
T Consensus 62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 34555555 3455899999999999988888765 334566666 666655442 1568888889888 77665
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
.++++. .+.-...+-.+++.-|+.|.+++-.-+-+|.
T Consensus 140 ~~vviFg------aes~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 140 RNVVIFG------AESVMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred ceEEEee------hHHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 333321 1222234455666778888888876665554
|
|
| >COG4742 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.11 Score=47.55 Aligned_cols=68 Identities=13% Similarity=0.212 Sum_probs=59.5
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccccC
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSN 115 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~ 115 (390)
-++....+.+|+=.|.+ ||.|.+||-..+++ .+..+..-++-|...|+|.+ +++.|++|..+..++..
T Consensus 8 ~if~SekRk~lLllL~e-gPkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~----~~~~Y~LS~~G~iiv~k 75 (260)
T COG4742 8 LLFLSEKRKDLLLLLKE-GPKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQ----EGDRYSLSSLGKIIVEK 75 (260)
T ss_pred HHHccHHHHHHHHHHHh-CCCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEe----cCCEEEecchHHHHHHH
Confidence 35566778888889998 79999999999999 99999999999999999994 68999999999877643
|
|
| >PRK03573 transcriptional regulator SlyA; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.47 Score=39.40 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=46.7
Q ss_pred hhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCcccccccc
Q 016366 49 VFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFVS 114 (390)
Q Consensus 49 lfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~~ 114 (390)
++..|... ++.|..+||+.+++ ++..+.+.++-|+..|+|.+.....+.+ ..+|+.+..+..
T Consensus 36 vL~~l~~~~~~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 36 TLHNIHQLPPEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIS 101 (144)
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHH
Confidence 45566543 36899999999999 9999999999999999998754323332 566776665553
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=93.36 E-value=2.1 Score=38.77 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=53.1
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCC---C--cEEEecccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE---G--DAILMKWIL 295 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~---~--D~i~~~~vl 295 (390)
.+++||=||=+. ..+.+++..++..+++++|+ +..++..++. -.|+.+..|+..++|. + |+++..=.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 468899999444 45555555566678888888 6676655531 2499999999998885 2 99887642
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
++.+-..-++.+..++||..|.....
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEE
T ss_pred --CCHHHHHHHHHHHHHHhCCCCceEEE
Confidence 34466778999999999976644333
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG1321 TroR Mn-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.12 Score=43.73 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=47.5
Q ss_pred HHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccccccc
Q 016366 51 EIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (390)
Q Consensus 51 d~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~ 114 (390)
+.....|+.+..+||+.+++ .++.+..+++-|...|+|+. ...+.+.+|+.+.....
T Consensus 17 ~l~~~~~~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~---~~y~gi~LT~~G~~~a~ 73 (154)
T COG1321 17 ELLEEKGFARTKDIAERLKV----SPPSVTEMLKRLERLGLVEY---EPYGGVTLTEKGREKAK 73 (154)
T ss_pred HHHhccCcccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEE---ecCCCeEEChhhHHHHH
Confidence 33334469999999999999 99999999999999999997 35678899988875553
|
|
| >TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.1 Score=42.73 Aligned_cols=46 Identities=26% Similarity=0.270 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
++.|+.|||+++++ ++..+.+.|+.|...|++.... ...+.|.+.+
T Consensus 24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~~~-g~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTSKR-GVEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecC-CCCCChhhcC
Confidence 48999999999999 9999999999999999997521 1345677754
|
The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.096 Score=51.96 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=44.0
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCC
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES 282 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~ 282 (390)
++....++|+-||||.++.++++.... ++++++ |+.++.|+.+ .+.+|++|-.++.
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~~~--ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGVKR--VIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccccc--eeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 667789999999999999999998754 555554 8888877753 6799999965553
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.53 Score=42.91 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=63.1
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC------------CCceEEECCCCCC------CCC-Cc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY------------AGVEHVGGNMFES------VPE-GD 287 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~------------~rv~~~~gd~~~~------~p~-~D 287 (390)
...+||++|+|+|..+...+. .....++.-|++.+++..... ..|.....+...+ .|. .|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 467899999999966555554 346678888876655543321 1344444333321 233 49
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
+|+.+.+++.-.. ...++..++..|..++.+++......
T Consensus 165 lilasDvvy~~~~--~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 165 LILASDVVYEEES--FEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEEEeeeeecCCc--chhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999876433 34778888888888886666555544
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.055 Score=52.38 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=42.5
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCC
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMF 280 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~ 280 (390)
+...+++.++ ..+. ++||+=||.|.++..+++... ++++++. +.+++.|++ .++++|+.++..
T Consensus 185 l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 185 LYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAE 254 (352)
T ss_dssp HHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SH
T ss_pred HHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeecc
Confidence 3345555555 3333 799999999999999998875 4666666 788888775 267999987653
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK11014 transcriptional repressor NsrR; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.13 Score=42.87 Aligned_cols=61 Identities=11% Similarity=0.104 Sum_probs=45.0
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
+++++.+.++.+ ..+.+.|..+||+.+|+ ++..+++.|..|...|+|.... ..++.|.+..
T Consensus 9 YAl~~~i~la~~---~~g~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~~-G~~GG~~l~~ 69 (141)
T PRK11014 9 YGLRALIYMASL---PEGRMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAVR-GKNGGIRLGK 69 (141)
T ss_pred HHHHHHHHHhcC---CCCCccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEec-CCCCCeeecC
Confidence 455555555433 22127899999999999 9999999999999999997643 2345677764
|
|
| >TIGR00122 birA_repr_reg BirA biotin operon repressor domain | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.15 Score=36.64 Aligned_cols=56 Identities=16% Similarity=0.237 Sum_probs=44.5
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
++.++..|.+ ++.+..+||+++++ ....+.+.++.|.+.|+.... . +..|.+.+..
T Consensus 2 ~~~il~~L~~-~~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~~--~-~~g~~l~~~~ 57 (69)
T TIGR00122 2 PLRLLALLAD-NPFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVLT--V-GKGYRLPPPI 57 (69)
T ss_pred hHHHHHHHHc-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe--c-CCceEecCcc
Confidence 4567788886 58999999999999 999999999999999996543 2 4566665433
|
This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value. |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.24 Score=47.66 Aligned_cols=108 Identities=19% Similarity=0.397 Sum_probs=73.9
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc---hHHHhhCC-------------CCCCceEEECCCC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL---PHVVQDAP-------------SYAGVEHVGGNMF 280 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl---~~~~~~a~-------------~~~rv~~~~gd~~ 280 (390)
.+.+.+. ........|+|+|.|.....++.......-+++.+ |.-+.... +...++++.++|.
T Consensus 183 si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 183 SIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 3444444 56778999999999999988887665555555554 32222211 1245889999998
Q ss_pred CC------CCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 281 ES------VPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 281 ~~------~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
.+ .+++++|+.+++. |+++...+ +.++..-+++|-+++-.+++.+
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr-~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVA--FDPELKLR-SKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred CHHHHHHHhhcceEEEEeccc--CCHHHHHh-hHHHHhhCCCcceEeccccccc
Confidence 73 2345999999987 44444333 4588899999999998888776
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.37 Score=41.90 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=63.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCC---CC-C--CcEEEec
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFES---VP-E--GDAILMK 292 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~---~p-~--~D~i~~~ 292 (390)
.+.++||+=+|+|.++.+.+.++- .+++.+|. ..++...++ ..+++++..|...- .+ . .|+|++.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 468999999999999999999863 45666665 444444443 36788888888741 11 2 3999988
Q ss_pred ccccc-CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 293 WILHC-WDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 293 ~vlh~-~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
=-++. ..+....-++-.-..+|+|+|.+++-.
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 77662 222221222222457799999877633
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.63 Score=46.12 Aligned_cols=101 Identities=19% Similarity=0.270 Sum_probs=73.7
Q ss_pred ceEEEEcCCccHHHHHHHhh-CCCCeEEEecchHHHhh-----CCCCCCceEEECCCCC-CCCCC--cEEEeccccccCC
Q 016366 229 ERLVDVGGGFGVTLSMITSK-YPQIKAVNFDLPHVVQD-----APSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWD 299 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl~~~~~~-----a~~~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~ 299 (390)
-+++-+|||.-.+...+-+. +++++.+.++ +-+++. +++++...+...|+.. .++.. |+|+....++++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S-~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSS-SVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceecccc-HHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 38999999999888887764 5666555555 333332 2445678899999988 77764 9999999998753
Q ss_pred -hh-------HHHHHHHHHHHhCCCCcEEEEEecc--cCCC
Q 016366 300 -DD-------HCLRILKNCYKAVPGNGKVIVMNSI--VPEI 330 (390)
Q Consensus 300 -d~-------~~~~~L~~~~~~L~pgG~lli~e~~--~~~~ 330 (390)
++ .+...+..+.+.|+|||+++.+... .+..
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~ 169 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQG 169 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCC
Confidence 22 2445689999999999999888874 4443
|
|
| >smart00344 HTH_ASNC helix_turn_helix ASNC type | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.13 Score=40.44 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=41.5
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCccee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~ 93 (390)
.+..|+..|..+++.|..+||+++|+ ++..+.+.++.|...|++.
T Consensus 4 ~D~~il~~L~~~~~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~ 48 (108)
T smart00344 4 IDRKILEELQKDARISLAELAKKVGL----SPSTVHNRVKRLEEEGVIK 48 (108)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCee
Confidence 46778888988779999999999999 9999999999999999997
|
AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli |
| >PRK13777 transcriptional regulator Hpr; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.17 Score=44.10 Aligned_cols=63 Identities=14% Similarity=-0.006 Sum_probs=49.2
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
+.++..|..++++|..+||+.+++ +...+.++++-|...|+|.+....++.+ ..+|+.+..+.
T Consensus 48 ~~iL~~L~~~~~itq~eLa~~l~l----~~sTvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~l~ 113 (185)
T PRK13777 48 HHILWIAYHLKGASISEIAKFGVM----HVSTAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEELL 113 (185)
T ss_pred HHHHHHHHhCCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 456677776679999999999999 8899999999999999999754333333 55677666554
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.4 Score=47.70 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=80.7
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEe---cchHHHhhCCCCCCceEEECCCCCC---CCCC-cEEEecccccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNF---DLPHVVQDAPSYAGVEHVGGNMFES---VPEG-DAILMKWILHC 297 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~---Dl~~~~~~a~~~~rv~~~~gd~~~~---~p~~-D~i~~~~vlh~ 297 (390)
......|+|..+|.|.|+.+|... | +-+..+ +-+..+...-++.-|- +-.|.-++ .|.. |++...++|..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~-VWVMNVVP~~~~ntL~vIydRGLIG-~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P-VWVMNVVPVSGPNTLPVIYDRGLIG-VYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C-ceEEEecccCCCCcchhhhhcccch-hccchhhccCCCCcchhheehhhhhhh
Confidence 455678999999999999999754 2 322111 1122333322222122 12233333 4444 99988888876
Q ss_pred CC-hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEE
Q 016366 298 WD-DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINF 376 (390)
Q Consensus 298 ~~-d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 376 (390)
+. .-+...+|-++-|.|+|||.++|-|..- ...++++++++-.++....
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD~~~------------------------------vl~~v~~i~~~lrW~~~~~ 489 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRDTVD------------------------------VLEKVKKIAKSLRWEVRIH 489 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEeccHH------------------------------HHHHHHHHHHhCcceEEEE
Confidence 54 3335689999999999999999866541 1344566777777775433
Q ss_pred EecCC---ceeEEEEeC
Q 016366 377 ASCVC---NLYIMEFFK 390 (390)
Q Consensus 377 ~~~~~---~~~vi~~~k 390 (390)
....+ ...|+.|.|
T Consensus 490 d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 490 DTEDGPDGPEKILICQK 506 (506)
T ss_pred ecCCCCCCCceEEEEEC
Confidence 33332 355777765
|
; GO: 0008168 methyltransferase activity |
| >PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.15 Score=45.65 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=46.3
Q ss_pred HHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 51 EIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 51 d~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
..+.+...+|..+||+.+++ ++..+.|.|+.|...|+|.+.....+..+++|+.+..+.
T Consensus 14 g~l~~~~~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~~~r~~~v~LTekG~~ll 72 (217)
T PRK14165 14 GAVNNTVKISSSEFANHTGT----SSKTAARILKQLEDEGYITRTIVPRGQLITITEKGLDVL 72 (217)
T ss_pred hccCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEEcCCceEEEECHHHHHHH
Confidence 34444346899999999999 999999999999999999875333345677787776555
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.28 Score=45.44 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=67.8
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCe-EEEecc-hHHHhhCCC----------CCCceEEECCCCC---CCCCC--c
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPEG--D 287 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~-~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~---~~p~~--D 287 (390)
..++.++|-||+|.|.+.+..++. +.+. +..+|+ ..+++..++ .++|.++.||.+. ..+++ |
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 457899999999999999998887 5543 455555 455554443 2789999998865 34443 8
Q ss_pred EEEeccccccCChh--HHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 288 AILMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 288 ~i~~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+|+.-..=-..|.. --..++.-+.++|||||++++....
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 88765421111211 1234667788999999999886644
|
|
| >PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.17 Score=35.34 Aligned_cols=37 Identities=24% Similarity=0.457 Sum_probs=32.8
Q ss_pred hcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 55 KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 55 ~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+.++++..+||+++++ .++.....++-|...|+|+..
T Consensus 19 ~~~~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~ 55 (60)
T PF01325_consen 19 EGGPVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE 55 (60)
T ss_dssp CTSSBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence 3359999999999999 999999999999999999863
|
The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A .... |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.18 Score=47.06 Aligned_cols=98 Identities=14% Similarity=0.198 Sum_probs=67.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCCCCC----CC--cEEEe
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESVP----EG--DAILM 291 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~~~p----~~--D~i~~ 291 (390)
...+|||+=|=+|.++...+.. ...+++.+|. ..+++.++++ .+++++++|+++.+. .. |+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999987654 3457899998 6778777652 579999999986322 12 99976
Q ss_pred cc---ccccCC-hhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 292 KW---ILHCWD-DDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 292 ~~---vlh~~~-d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
.= .=..+. ..+-.++++.+.+.|+|||.|+++..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 31 100111 23356789999999999999876544
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG4189 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.22 Score=44.13 Aligned_cols=55 Identities=15% Similarity=0.306 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 36 VLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 36 ~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
-.-++|...++..|++.|...||+.+.|||+++|+ +..-+..-+..|+..|++..
T Consensus 15 dv~kalaS~vRv~Il~lL~~k~plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT 69 (308)
T COG4189 15 DVLKALASKVRVAILQLLHRKGPLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRT 69 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCC----chhhhhhhHHHHHhcCceee
Confidence 34578889999999999998789999999999999 88889999999999999975
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.059 Score=42.31 Aligned_cols=85 Identities=14% Similarity=0.246 Sum_probs=43.5
Q ss_pred cEEEecccccc----CChhHHHHHHHHHHHhCCCCcEEEEEecccC-CCCCcchHHhhhhhhhhhhhhhcCCCcccCHHH
Q 016366 287 DAILMKWILHC----WDDDHCLRILKNCYKAVPGNGKVIVMNSIVP-EIPEVSSAARETSLLDVLLMTRDGGGRERTKKE 361 (390)
Q Consensus 287 D~i~~~~vlh~----~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e 361 (390)
|+|+|.+|.-+ +.|+-...+++++++.|+|||.+++ |+..= ...... .....+.-++ ..-...+++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w~sY~~~~---~~~~~~~~n~-----~~i~lrP~~ 73 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPWKSYKKAK---RLSEEIRENY-----KSIKLRPDQ 73 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---HHHHHTTT---TS-HHHHHHH-----HH----GGG
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCcHHHHHHh---hhhHHHHhHH-----hceEEChHH
Confidence 78888877543 4688899999999999999998764 54310 000000 0000000011 111234567
Q ss_pred HHHHHHH--CCCCeeEEEecC
Q 016366 362 YTELAIA--AGFKGINFASCV 380 (390)
Q Consensus 362 ~~~ll~~--aGf~~~~~~~~~ 380 (390)
+.++|.+ .||+.++....+
T Consensus 74 F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHHHHTSTTT---EEEEE---
T ss_pred HHHHHHhcccceEEEEEcccC
Confidence 8888887 699988866554
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.11 Score=39.50 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=45.8
Q ss_pred hhHHHhhcCCCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccCCC---cceecCccccccc
Q 016366 49 VFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~---~~y~~t~~s~~l~ 113 (390)
|+..|.. |+....||.+.+ ++ .+..|.+-|+.|...|+|.+...... -.|++|+.+..+.
T Consensus 10 IL~~l~~-g~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 10 ILRALFQ-GPMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHHTT-SSEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred HHHHHHh-CCCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 4555666 799999999999 89 99999999999999999986432111 2499999887766
|
The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D. |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=92.20 E-value=2.7 Score=35.94 Aligned_cols=121 Identities=16% Similarity=0.106 Sum_probs=74.8
Q ss_pred EEcCCccHHHHHHHhhCC---CCeEEEecc-hHHHhhCCC---------CCCceEEE-CCCCC--CCC---CC--cEEEe
Q 016366 233 DVGGGFGVTLSMITSKYP---QIKAVNFDL-PHVVQDAPS---------YAGVEHVG-GNMFE--SVP---EG--DAILM 291 (390)
Q Consensus 233 DiG~G~G~~~~~l~~~~p---~~~~~~~Dl-~~~~~~a~~---------~~rv~~~~-gd~~~--~~p---~~--D~i~~ 291 (390)
=||=|.=+|+..|++.++ ++.++.+|- ..+.+.... ..+++++. .|+.+ ... .. |.|++
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367788899999999987 455677775 333333221 13444433 36654 222 22 99988
Q ss_pred ccccccC-----------ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHH
Q 016366 292 KWILHCW-----------DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKK 360 (390)
Q Consensus 292 ~~vlh~~-----------~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~ 360 (390)
++---.. ...-...+|+.+.+.|+++|.+.|.-..-. .++.=
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~---------------------------py~~W 134 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ---------------------------PYDSW 134 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC---------------------------CCccc
Confidence 8764331 122356789999999999999887332211 11122
Q ss_pred HHHHHHHHCCCCeeEEEecC
Q 016366 361 EYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 361 e~~~ll~~aGf~~~~~~~~~ 380 (390)
++.++.+++||...+..+..
T Consensus 135 ~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 135 NIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred cHHHHHHhcCCEEEEEecCC
Confidence 23577788999998887765
|
|
| >COG1846 MarR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.19 Score=40.04 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=52.6
Q ss_pred HHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccccC
Q 016366 42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVSN 115 (390)
Q Consensus 42 ~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~~~ 115 (390)
....+..++..|...++.+..+||+++++ ++..+.++++-|+..|+|.+.....++ .+.+|+.+..+...
T Consensus 20 lt~~q~~~L~~l~~~~~~~~~~la~~l~i----~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~~~ 92 (126)
T COG1846 20 LTPPQYQVLLALYEAGGITVKELAERLGL----DRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELLEQ 92 (126)
T ss_pred CCHHHHHHHHHHHHhCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHHHH
Confidence 34556667777777655555999999999 999999999999999999986543333 36777777655543
|
|
| >PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.19 Score=34.17 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=33.0
Q ss_pred ChhHHH-hhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcce
Q 016366 48 GVFEII-AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL 92 (390)
Q Consensus 48 glfd~L-~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll 92 (390)
.|+..| ...+++|+++||+.+++ ..+.+.+-+..|...|+.
T Consensus 4 ~il~~L~~~~~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~~~ 45 (55)
T PF08279_consen 4 QILKLLLESKEPITAKELAEELGV----SRRTIRRDIKELREWGIP 45 (55)
T ss_dssp HHHHHHHHTTTSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT-E
T ss_pred HHHHHHHHcCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCe
Confidence 356667 33357999999999999 999999999999999933
|
The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A .... |
| >PRK15431 ferrous iron transport protein FeoC; Provisional | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.26 Score=36.11 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=38.4
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
|=|.|..+|-.++.+||..++. +++.++.+|..|+..|-|++
T Consensus 7 lRd~l~~~gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkver 48 (78)
T PRK15431 7 VRDLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVR 48 (78)
T ss_pred HHHHHHHcCcccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 3467888889999999999999 99999999999999999985
|
|
| >PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.28 Score=35.03 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=41.8
Q ss_pred hhHHHhhc-CCCCHHHHHHHhccCCCCC--CCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 49 VFEIIAKA-GELSAPEIAAQLQAQNVKA--PMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 49 lfd~L~~~-g~~t~~eLa~~~~~~~~~~--~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
|++.|.+. +|++..+|++.+... ..+ +..++|.|++|...|++.. .....+.+|+.+.
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~-g~~~se~avRrrLr~me~~Glt~~---~g~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLR-GEELSEEAVRRRLRAMERDGLTRK---VGRQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhc-ChhhhHHHHHHHHHHHHHCCCccc---cCCcccccCHHHH
Confidence 56677665 499999999999762 223 4789999999999998774 2233456776543
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.96 Score=44.16 Aligned_cols=109 Identities=22% Similarity=0.341 Sum_probs=61.9
Q ss_pred HHHHHHhhccCCcceEEEEcCCccH----HHHHHHhhC---CCCeEEEecchH-----HHhhCCCC-------CC--ceE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGV----TLSMITSKY---PQIKAVNFDLPH-----VVQDAPSY-------AG--VEH 274 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~----~~~~l~~~~---p~~~~~~~Dl~~-----~~~~a~~~-------~r--v~~ 274 (390)
+.|++.+. -.+..+|+|+|.|.|. +...++.+. |.+++|+++.|. .++.+.++ -+ .+|
T Consensus 100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef 178 (374)
T PF03514_consen 100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEF 178 (374)
T ss_pred HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEE
Confidence 45777776 4466789999999994 556666653 778899998622 23332221 12 334
Q ss_pred EE--CCCCCCC-------CCCc--EEEeccccccCChh------HHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 275 VG--GNMFESV-------PEGD--AILMKWILHCWDDD------HCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 275 ~~--gd~~~~~-------p~~D--~i~~~~vlh~~~d~------~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
.. .+-.+++ ..++ +|-+..-||++.++ ....+|+.++ .|+|.- ++++|.-.
T Consensus 179 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P~v-vv~~E~ea 246 (374)
T PF03514_consen 179 HPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNPKV-VVLVEQEA 246 (374)
T ss_pred EecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCCCE-EEEEeecC
Confidence 33 1222211 1232 33466677888632 2345776664 788874 44555443
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.44 Score=36.17 Aligned_cols=68 Identities=22% Similarity=0.242 Sum_probs=51.0
Q ss_pred HHHHHhChhHHHhhc-C-CCCHHHHHHHhccCCCCCCCcHHHHHH----------HHhcCcce-eecccCCCcceecCcc
Q 016366 42 QAAIQLGVFEIIAKA-G-ELSAPEIAAQLQAQNVKAPMMLDRMLR----------LLVSHRVL-ECSVSGGERLYALNPV 108 (390)
Q Consensus 42 ~~a~~lglfd~L~~~-g-~~t~~eLa~~~~~~~~~~~~~l~r~L~----------~L~~~gll-~~~~~~~~~~y~~t~~ 108 (390)
+.=++..|+..|... + +.++.|||..+++ ++..+..-|+ .|+.+|+| .+........|++|+.
T Consensus 7 rS~~R~~vl~~L~~~yp~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g~k~Y~lT~~ 82 (90)
T PF07381_consen 7 RSKVRKKVLEYLCSIYPEPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGGFKYYRLTEK 82 (90)
T ss_pred HHHHHHHHHHHHHHcCCCcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCCeeEEEeChh
Confidence 355677889999876 3 8999999999999 8888887775 48999999 3321122346999987
Q ss_pred ccccc
Q 016366 109 SKYFV 113 (390)
Q Consensus 109 s~~l~ 113 (390)
+..+.
T Consensus 83 G~~~~ 87 (90)
T PF07381_consen 83 GKRIA 87 (90)
T ss_pred hhhHH
Confidence 76544
|
The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.11 E-value=1.6 Score=42.37 Aligned_cols=102 Identities=17% Similarity=0.176 Sum_probs=66.0
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCC--CeEEEecc-hHH----HhhCCCC--CCceEEECCCCC---CCCC---CcEE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHV----VQDAPSY--AGVEHVGGNMFE---SVPE---GDAI 289 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~--~~~~~~Dl-~~~----~~~a~~~--~rv~~~~gd~~~---~~p~---~D~i 289 (390)
..++.+|||..++.|.=+.++++..++ ..++.+|. +.- .+++++. .++..+..|... ..+. .|.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 567799999999999999999998776 45578886 333 3333322 446777777643 1221 2666
Q ss_pred Eec------cccc-------cCChhH-------HHHHHHHHHHhCCCCcEEEEEecc
Q 016366 290 LMK------WILH-------CWDDDH-------CLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 290 ~~~------~vlh-------~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
++. .+++ .+...+ -.++|..+.+.|||||.|+-++=.
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 432 2332 222221 346899999999999998865533
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.31 Score=47.55 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=52.1
Q ss_pred CCceEEECCCCC---CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 270 AGVEHVGGNMFE---SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 270 ~rv~~~~gd~~~---~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
++|+++++++.+ ..|.+ |.+++..++-+++++...+.++.+.+.++|||++++-....+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 889999999877 34444 9999999999999999999999999999999999987665443
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PRK06474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.37 Score=41.77 Aligned_cols=71 Identities=17% Similarity=0.286 Sum_probs=54.4
Q ss_pred HHHHHHHHHhChhHHHhhcC-CCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccC-----CCcceecCcccc
Q 016366 38 PMATQAAIQLGVFEIIAKAG-ELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNPVSK 110 (390)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g-~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~-----~~~~y~~t~~s~ 110 (390)
..+|.--.++.|++.|..++ ++|+.+|++.+ ++ +...+.|.|+.|+..|+|...... .+..|++++.+.
T Consensus 5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~ 80 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDA 80 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEecccee
Confidence 45677778899999998765 49999999999 67 788899999999999999863211 123477777654
Q ss_pred cc
Q 016366 111 YF 112 (390)
Q Consensus 111 ~l 112 (390)
.+
T Consensus 81 ~~ 82 (178)
T PRK06474 81 KI 82 (178)
T ss_pred ee
Confidence 44
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.62 Score=43.41 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=54.6
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCe-EEEecc-hHHHhhCCCC-----CCceEEECCCCC
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE 281 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~-~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~ 281 (390)
+..+.++.+. ..+....+|.--|.|.++..+++++|... .+++|. |.+++.|++. +|+.++.++|.+
T Consensus 11 Ll~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 11 LLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 3456677776 56678999999999999999999998665 889988 8899988863 588888887754
|
|
| >PRK10870 transcriptional repressor MprA; Provisional | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.35 Score=41.89 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=48.3
Q ss_pred HhChhHHHhh--cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCcccccccc
Q 016366 46 QLGVFEIIAK--AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFVS 114 (390)
Q Consensus 46 ~lglfd~L~~--~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~~ 114 (390)
++.++-.|.. ++++|..+||+.+++ ++..+.++++-|+..|+|.+.....+++ ..+|+.+..+..
T Consensus 57 q~~iL~~L~~~~~~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 57 LFMALITLESQENHSIQPSELSCALGS----SRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLR 126 (176)
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 3445556653 247899999999999 9999999999999999999754433332 566776665553
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.44 E-value=1.9 Score=41.30 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=65.3
Q ss_pred cCCcceEEEEcCC-ccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECC---CCCCCCC-CcEEEeccccccC
Q 016366 225 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGN---MFESVPE-GDAILMKWILHCW 298 (390)
Q Consensus 225 ~~~~~~iLDiG~G-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd---~~~~~p~-~D~i~~~~vlh~~ 298 (390)
..+..+|+=+|+| -|+.+..++++.- .+++++|. ++-.+.+++...-.++... ..+.... .|+|+..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 4567888888877 4578899999776 89999998 6778888877665666543 2222222 377765443 1
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 299 DDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
..+....+.|++||+++++-..
T Consensus 240 ------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 240 ------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ------hhHHHHHHHHhcCCEEEEECCC
Confidence 4477778899999999987766
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.42 E-value=1.6 Score=43.67 Aligned_cols=125 Identities=18% Similarity=0.295 Sum_probs=78.9
Q ss_pred hhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccC--CcceEEEEcCCccHHHHHHHhh----CCCCeEEEecc-hH
Q 016366 189 IFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQ--NVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PH 261 (390)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~--~~~~iLDiG~G~G~~~~~l~~~----~p~~~~~~~Dl-~~ 261 (390)
.|+-+++||-....|.++. ...+.+..+.-+ ....|+=+|+|-|-+..+.++. ...++.+.++- |.
T Consensus 334 TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPN 406 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPN 406 (649)
T ss_pred hhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcc
Confidence 4556677877766666543 345566655222 2567899999999877776654 23455666664 54
Q ss_pred HHhhCCC------CCCceEEECCCCC-CCC-C-CcEEEeccccccCChhH-HHHHHHHHHHhCCCCcEEE
Q 016366 262 VVQDAPS------YAGVEHVGGNMFE-SVP-E-GDAILMKWILHCWDDDH-CLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 262 ~~~~a~~------~~rv~~~~gd~~~-~~p-~-~D~i~~~~vlh~~~d~~-~~~~L~~~~~~L~pgG~ll 321 (390)
++-..+. ..+|+++..||.+ ..| . +|+++ +..|.-|.|.+ ..+-|.-+.+.|||+|.-+
T Consensus 407 AivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~V-SELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 407 AIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIV-SELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred hhhhhhhhchhhhcCeeEEEeccccccCCchhhccchH-HHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 4333322 2689999999998 544 3 38875 33444444332 3345888888999998655
|
|
| >smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.34 Score=33.17 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=30.8
Q ss_pred CC-CHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 58 EL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 58 ~~-t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+ |..+||+.+++ ....+.+.++.|...|++..
T Consensus 19 ~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~ 52 (60)
T smart00345 19 KLPSERELAAQLGV----SRTTVREALSRLEAEGLVQR 52 (60)
T ss_pred cCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 45 89999999999 99999999999999999975
|
|
| >PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.54 Score=37.70 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=44.3
Q ss_pred HHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 42 ~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
+..+...|.+.+.++|.+|..+++..+|+ +...+.+.++.|++.|-|..
T Consensus 10 r~eLk~rIvElVRe~GRiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~ 58 (127)
T PF06163_consen 10 REELKARIVELVREHGRITIKQLVAKTGA----SRNTVKRYLRELVARGDLYR 58 (127)
T ss_pred HHHHHHHHHHHHHHcCCccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEe
Confidence 44567788899999999999999999999 99999999999999998875
|
|
| >PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.24 Score=29.78 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=25.9
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcce
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL 92 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll 92 (390)
|+|-+|||+.+|+ .+.-+.|.|.-|...|++
T Consensus 2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence 5789999999999 999999999999998875
|
These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B .... |
| >cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.67 Score=32.34 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=29.8
Q ss_pred CCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 59 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 59 ~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.|..+||+.+++ +...+.+.|..|...|+|..
T Consensus 26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~ 57 (66)
T cd07377 26 PSERELAEELGV----SRTTVREALRELEAEGLVER 57 (66)
T ss_pred CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 469999999999 99999999999999999975
|
This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is |
| >COG3432 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.14 Score=39.14 Aligned_cols=59 Identities=17% Similarity=0.318 Sum_probs=46.9
Q ss_pred hhHHHh--hcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCcccccccc
Q 016366 49 VFEIIA--KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (390)
Q Consensus 49 lfd~L~--~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~~ 114 (390)
+||.|. .+|+..+.-|.-.+++ +......+++.|+..|++.. .+++ .|.+|+.+..|..
T Consensus 20 i~dIL~~~~~~~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~---~~~~~~~~y~lT~KG~~fle 83 (95)
T COG3432 20 IFDILKAISEGGIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIK---QDNGRRKVYELTEKGKRFLE 83 (95)
T ss_pred HHHHHHHhcCCCCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEe---ccCCccceEEEChhHHHHHH
Confidence 355555 3468889999999999 99999999999999996664 2333 6999999987753
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=89.89 E-value=2.2 Score=41.72 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=62.5
Q ss_pred cCCcceEEEEcCCc-cHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECC----CCC---CC-CC-C-cEEEec
Q 016366 225 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGN----MFE---SV-PE-G-DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd----~~~---~~-p~-~-D~i~~~ 292 (390)
..+..+||.+|||. |..+..+++....-+++.++. ++..+.+++...+..+... +.+ .+ +. + |+|+-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 55678999999988 889999999876445777765 6677766654223332211 111 11 11 3 777553
Q ss_pred c---------------ccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 293 W---------------ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 293 ~---------------vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
- +|+..++. ...+..+.+.|+|+|++++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhccCCEEEEEcC
Confidence 2 12222333 3578899999999999998754
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >TIGR00373 conserved hypothetical protein TIGR00373 | Back alignment and domain information |
|---|
Probab=89.84 E-value=0.36 Score=40.96 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=39.5
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
..|+++|-.+|.+|-+|||+.+|+ +..-++++|..|...|++..
T Consensus 17 v~Vl~aL~~~~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~ 60 (158)
T TIGR00373 17 GLVLFSLGIKGEFTDEEISLELGI----KLNEVRKALYALYDAGLADY 60 (158)
T ss_pred HHHHHHHhccCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCcee
Confidence 457888876679999999999999 99999999999999999964
|
This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. |
| >smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.4 Score=36.71 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=38.5
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 61 APEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 61 ~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
+.+||+.+++ ++..+.+.++.|...|+|... .+..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~---~~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYE---PYRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEc---CCCceEechhHHHHH
Confidence 5689999999 999999999999999999973 335788888776554
|
iron dependent repressor |
| >PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species | Back alignment and domain information |
|---|
Probab=89.72 E-value=0.45 Score=39.18 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=38.8
Q ss_pred hcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecC
Q 016366 55 KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (390)
Q Consensus 55 ~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t 106 (390)
.+|+.|.+|||.+.|+ ..+.+...|.++++-|-+.+.+....=+|..+
T Consensus 3 q~Ga~T~eELA~~FGv----ttRkvaStLa~~ta~Grl~Rv~q~gkfRy~iP 50 (155)
T PF07789_consen 3 QEGAKTAEELAGKFGV----TTRKVASTLAMVTATGRLIRVNQNGKFRYCIP 50 (155)
T ss_pred ccCcccHHHHHHHhCc----chhhhHHHHHHHHhcceeEEecCCCceEEeCC
Confidence 3589999999999999 99999999999999999987643222246554
|
The region in question is approximately 150 amino acid residues long. |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.70 E-value=1.5 Score=39.48 Aligned_cols=96 Identities=13% Similarity=0.168 Sum_probs=67.1
Q ss_pred cCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-----hHHHhhCCCCCCceEEECCCCCCCCC----C--cEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-----PHVVQDAPSYAGVEHVGGNMFESVPE----G--DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-----~~~~~~a~~~~rv~~~~gd~~~~~p~----~--D~i~~~ 292 (390)
.++..+||-+|+++|....++..- .|+--+..++. .+.+..|++++||--+.-|+..|..- + |+|+..
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaD 233 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFAD 233 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEecc
Confidence 567889999999999988887763 35544444443 35677888889999888898876431 2 766543
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+- -|| +.+-+--++...|++||.++|.=
T Consensus 234 -va--qpd-q~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 234 -VA--QPD-QARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred -CC--Cch-hhhhhhhhhhhhhccCCeEEEEE
Confidence 22 233 34455667888999999888743
|
|
| >PHA02943 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.52 Score=39.04 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=37.2
Q ss_pred ChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 48 glfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.|++.| +.|+.|..|||+++|+ .....+-.|..|...|.|.+.
T Consensus 15 eILE~L-k~G~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV 57 (165)
T PHA02943 15 KTLRLL-ADGCKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKV 57 (165)
T ss_pred HHHHHH-hcCCccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEE
Confidence 456677 4478999999999999 888999999999999999863
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.48 E-value=0.93 Score=47.87 Aligned_cols=96 Identities=14% Similarity=0.164 Sum_probs=57.9
Q ss_pred CcceEEEEcCCccHHHHHHHhhC-------C-----CCeEEEecc-h---HHHhhCC----------------------C
Q 016366 227 NVERLVDVGGGFGVTLSMITSKY-------P-----QIKAVNFDL-P---HVVQDAP----------------------S 268 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~-------p-----~~~~~~~Dl-~---~~~~~a~----------------------~ 268 (390)
..-+|+|+|=|+|.......+.. | .++++.++. | +.+..+. .
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34789999999998666655433 4 467787774 2 1111110 0
Q ss_pred -------CCC--ceEEECCCCCCCC---C-CcEEEecc-ccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 016366 269 -------YAG--VEHVGGNMFESVP---E-GDAILMKW-ILHCWDDDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 269 -------~~r--v~~~~gd~~~~~p---~-~D~i~~~~-vlh~~~d~~~~~~L~~~~~~L~pgG~lli 322 (390)
..+ +++..||+.+-++ . .|++++.. .=..-|+-.-..+|+.+++.++|||.+.-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 012 3466688765222 2 38877653 11122444456889999999999998763
|
|
| >TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain | Back alignment and domain information |
|---|
Probab=88.94 E-value=0.88 Score=35.00 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecC
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t 106 (390)
.++|..|||+.+|+ ++..+.|.|..|...|+|.+. ..-+.|..|
T Consensus 46 ~~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r~--~~~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL----SRTHVSDAIKSLARRRIIFRQ--GMMGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeee--cCCceeecC
Confidence 38999999999999 999999999999999999863 223566666
|
This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins. |
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=88.50 E-value=0.36 Score=48.91 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=55.1
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccccCCC
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKD 117 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~~~ 117 (390)
.+..++..|...+++|..+||+++++ ++..+.+.++.|.+.|+|.+.. .....|.+|+.+..+.....
T Consensus 7 ~e~~vL~~L~~~~~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~-~~~~~i~LTeeG~~~~~~g~ 74 (489)
T PRK04172 7 NEKKVLKALKELKEATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEE-RVEEVYVLTEEGKKYAEEGL 74 (489)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEe-eeEEEEEECHHHHHHHHhcC
Confidence 45567777776679999999999999 9999999999999999998642 12356899999987776544
|
|
| >cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators | Back alignment and domain information |
|---|
Probab=88.31 E-value=0.9 Score=36.11 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=38.4
Q ss_pred HhChhHHHhhc-CCCCHHHHHHHhccC-CCCCCCcHHHHHHHHhcCcceeec
Q 016366 46 QLGVFEIIAKA-GELSAPEIAAQLQAQ-NVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 46 ~lglfd~L~~~-g~~t~~eLa~~~~~~-~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+.-|++.|... +++|++||.+++.-. +..+..-+-|.|+.|+..|++.+.
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~ 54 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREI 54 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 45578888764 489999999998420 011788899999999999999864
|
Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. |
| >PRK11169 leucine-responsive transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=87.90 E-value=0.59 Score=39.94 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=43.5
Q ss_pred HHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCccee
Q 016366 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (390)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~ 93 (390)
-..+..|+..|.++|..|..+||+++|+ .+..+.+=++-|...|++.
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~ 59 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVGL----SPTPCLERVRRLERQGFIQ 59 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeE
Confidence 3468889999998889999999999999 9999999999999999997
|
|
| >PRK11179 DNA-binding transcriptional regulator AsnC; Provisional | Back alignment and domain information |
|---|
Probab=87.63 E-value=0.69 Score=38.99 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=42.6
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCccee
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~ 93 (390)
..+..|++.|..+|..|..+||+++|+ .+..+.+=++-|...|++.
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~ 54 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQFGV----SPGTIHVRVEKMKQAGIIT 54 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCee
Confidence 367789999998889999999999999 9999999999999999997
|
|
| >COG1522 Lrp Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=87.06 E-value=0.77 Score=38.45 Aligned_cols=47 Identities=17% Similarity=0.334 Sum_probs=42.9
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
..+..|...|.+++..|..+||+++|+ .+..+.+-++-|...|++..
T Consensus 8 ~~D~~IL~~L~~d~r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~ 54 (154)
T COG1522 8 DIDRRILRLLQEDARISNAELAERVGL----SPSTVLRRIKRLEEEGVIKG 54 (154)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceee
Confidence 456788899998889999999999999 99999999999999999984
|
|
| >COG1378 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=86.84 E-value=1.1 Score=41.00 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=49.6
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
..|..++-.|-..|+.|+.|||+.+|+ +.+.+-..|+-|...|++.... ..+..|+.-+-..
T Consensus 16 ~yEa~vY~aLl~~g~~tA~eis~~sgv----P~~kvY~vl~sLe~kG~v~~~~-g~P~~y~av~p~~ 77 (247)
T COG1378 16 EYEAKVYLALLCLGEATAKEISEASGV----PRPKVYDVLRSLEKKGLVEVIE-GRPKKYRAVPPEE 77 (247)
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHcCC----CchhHHHHHHHHHHCCCEEeeC-CCCceEEeCCHHH
Confidence 345556677776689999999999999 9999999999999999998632 3556788766444
|
|
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=86.72 E-value=0.56 Score=46.87 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=58.3
Q ss_pred HHHHhChhHHHhhcCC-CCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccccCCCC
Q 016366 43 AAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDG 118 (390)
Q Consensus 43 ~a~~lglfd~L~~~g~-~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~~~~ 118 (390)
++.+..|+..|...++ .+.++||+.+|+ ++..+.+.+..|.+.|++.... .....|.+|+.+..++....+
T Consensus 2 ~~~e~~iL~~l~~~~~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~-~~~~~~~LT~eG~~~l~~G~P 73 (492)
T PLN02853 2 AMAEEALLGALSNNEEISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQD-IKRETWVLTEEGKKYAAEGSP 73 (492)
T ss_pred chHHHHHHHHHHhcCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEE-EEEEEEEECHHHHHHHHcCCH
Confidence 3567778888887555 899999999999 9999999999999999997642 245679999999988876653
|
|
| >PRK13509 transcriptional repressor UlaR; Provisional | Back alignment and domain information |
|---|
Probab=86.38 E-value=0.94 Score=41.60 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=40.2
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
..|.+.|.++|.+++.|||+.+++ .+.-++|-|+.|.+.|++.+
T Consensus 8 ~~Il~~l~~~~~~~~~ela~~l~v----S~~TirRdL~~Le~~g~i~r 51 (251)
T PRK13509 8 QILLELLAQLGFVTVEKVIERLGI----SPATARRDINKLDESGKLKK 51 (251)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 347888888889999999999999 99999999999999999986
|
|
| >PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors | Back alignment and domain information |
|---|
Probab=86.01 E-value=0.45 Score=37.30 Aligned_cols=43 Identities=19% Similarity=0.404 Sum_probs=33.3
Q ss_pred ChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 48 glfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.|++.|..+|.++-++||+.+++ ++.-++++|..|...|++..
T Consensus 17 ~Il~~L~~~~~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~ 59 (105)
T PF02002_consen 17 RILDALLRKGELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSY 59 (105)
T ss_dssp HHHHHHHHH--B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EE
T ss_pred HHHHHHHHcCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEE
Confidence 36788876679999999999999 99999999999999999975
|
Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A. |
| >COG2512 Predicted membrane-associated trancriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=85.92 E-value=0.88 Score=41.85 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=40.8
Q ss_pred HhChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 46 ~lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+..+.++|.++| -++-+||.+++|+ ++..+.|+|+-|+..|++++.
T Consensus 197 e~~il~~i~~~GGri~Q~eL~r~lgl----sktTvsR~L~~LEk~GlIe~~ 243 (258)
T COG2512 197 EKEILDLIRERGGRITQAELRRALGL----SKTTVSRILRRLEKRGLIEKE 243 (258)
T ss_pred HHHHHHHHHHhCCEEeHHHHHHhhCC----ChHHHHHHHHHHHhCCceEEE
Confidence 456778888776 4999999999999 999999999999999999875
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=85.89 E-value=0.76 Score=38.03 Aligned_cols=105 Identities=12% Similarity=0.148 Sum_probs=62.9
Q ss_pred eEEEecc-hHHHhhCCCC-------CCceEEECCCCC---CCCC-C-cEEEeccccccCCh---------hHHHHHHHHH
Q 016366 253 KAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVPE-G-DAILMKWILHCWDD---------DHCLRILKNC 310 (390)
Q Consensus 253 ~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~---~~p~-~-D~i~~~~vlh~~~d---------~~~~~~L~~~ 310 (390)
++.++|+ +++++.++++ +||+++..+=.. -++. . |+++++-- ++|. +.-...|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 4688998 7778777652 579998875443 3555 3 88877643 3442 2356789999
Q ss_pred HHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 311 YKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 311 ~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
.+.|+|||.+.|+-..-.+.. ..+. ....+|.+-|.+.-|.+.+...+.
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG----~eE~-----------------~av~~~~~~L~~~~~~V~~~~~~N 127 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGG----KEES-----------------EAVEEFLASLDQKEFNVLKYQFIN 127 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHH----HHHH-----------------HHHHHHHHTS-TTTEEEEEEEESS
T ss_pred HHhhccCCEEEEEEeCCCCCC----HHHH-----------------HHHHHHHHhCCcceEEEEEEEccC
Confidence 999999999988665422210 0000 013455555566778888777765
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2 | Back alignment and domain information |
|---|
Probab=85.57 E-value=0.76 Score=32.30 Aligned_cols=43 Identities=23% Similarity=0.413 Sum_probs=35.7
Q ss_pred ChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 48 glfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.|++.|-..|..|..+|.+.+++ +++.++.-|-.|..+|++..
T Consensus 17 ~V~~~Ll~~G~ltl~~i~~~t~l----~~~~Vk~~L~~LiQh~~v~y 59 (62)
T PF08221_consen 17 KVGEVLLSRGRLTLREIVRRTGL----SPKQVKKALVVLIQHNLVQY 59 (62)
T ss_dssp HHHHHHHHC-SEEHHHHHHHHT------HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCeee
Confidence 46677777789999999999999 99999999999999999974
|
7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A. |
| >PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress | Back alignment and domain information |
|---|
Probab=85.35 E-value=1.5 Score=32.27 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYF 112 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l 112 (390)
.|+...+||+++++ ++.-++.-|..|.++|+|+... ...+.|..|..+-.+
T Consensus 22 ~PVgSk~ia~~l~~----s~aTIRN~M~~Le~lGlve~~p-~~s~GriPT~~aYr~ 72 (78)
T PF03444_consen 22 EPVGSKTIAEELGR----SPATIRNEMADLEELGLVESQP-HPSGGRIPTDKAYRA 72 (78)
T ss_pred CCcCHHHHHHHHCC----ChHHHHHHHHHHHHCCCccCCC-CCCCCCCcCHHHHHH
Confidence 49999999999999 9999999999999999997310 123556666655433
|
Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent |
| >COG1733 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=85.30 E-value=1.7 Score=35.00 Aligned_cols=78 Identities=18% Similarity=0.199 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhc-cCCCCCCCcHHHHHHHHhcCcceeecccCC-
Q 016366 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVSGG- 99 (390)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~-~~~~~~~~~l~r~L~~L~~~gll~~~~~~~- 99 (390)
.+..+..+++..+=|..-+|+...+ |+....||-..++ + .+..|.+-|+.|+..|+|.+.....
T Consensus 10 ~c~~~~~l~~ig~kW~~lIl~~L~~----------g~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R~~~~~~ 75 (120)
T COG1733 10 PCPVEEALEVIGGKWTLLILRDLFD----------GPKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVERVVYPEE 75 (120)
T ss_pred CCCHHHHHHHHcCccHHHHHHHHhc----------CCCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEeeecCCC
Confidence 5678888999999998887775443 5888999999988 8 8999999999999999998743211
Q ss_pred --CcceecCccccccc
Q 016366 100 --ERLYALNPVSKYFV 113 (390)
Q Consensus 100 --~~~y~~t~~s~~l~ 113 (390)
.-.|++|+.+..+.
T Consensus 76 PprveY~LT~~G~~L~ 91 (120)
T COG1733 76 PPRVEYRLTEKGRDLL 91 (120)
T ss_pred CceeEEEEhhhHHHHH
Confidence 13488888776555
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=85.29 E-value=7.9 Score=33.79 Aligned_cols=104 Identities=14% Similarity=0.205 Sum_probs=72.3
Q ss_pred CcceEEEEcCCccHHHHHHHh----hCCCCeEEEecc--hHHHhhCCCCCCceEEECCCCCC-CC-------CC--cEEE
Q 016366 227 NVERLVDVGGGFGVTLSMITS----KYPQIKAVNFDL--PHVVQDAPSYAGVEHVGGNMFES-VP-------EG--DAIL 290 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~----~~p~~~~~~~Dl--~~~~~~a~~~~rv~~~~gd~~~~-~p-------~~--D~i~ 290 (390)
++..|+++|.-.|..+..++. ..-..+++++|+ ...-..|++.++|.|+.|+-.+| +. .. -+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 568899999988876665543 333466777765 22223444468999999998763 11 11 5667
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCC
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPE 332 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~ 332 (390)
|-..-|++. .+.+.|+-....|..|-++++.|...++-+.
T Consensus 149 ilDsdHs~~--hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~ 188 (237)
T COG3510 149 ILDSDHSME--HVLAELKLLAPLLSAGDYLVVEDSNVNDLPG 188 (237)
T ss_pred EecCCchHH--HHHHHHHHhhhHhhcCceEEEecccccCCCC
Confidence 777777653 3557788888889899999999988877553
|
|
| >PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function | Back alignment and domain information |
|---|
Probab=85.26 E-value=1.2 Score=33.92 Aligned_cols=46 Identities=26% Similarity=0.278 Sum_probs=41.6
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.++.|+..|...||=.+.-+|..+++ +...+.+.++-|..+|+|++
T Consensus 8 l~~~IL~hl~~~~~Dy~k~ia~~l~~----~~~~v~~~l~~Le~~GLler 53 (92)
T PF10007_consen 8 LDLKILQHLKKAGPDYAKSIARRLKI----PLEEVREALEKLEEMGLLER 53 (92)
T ss_pred hHHHHHHHHHHHCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence 45667888887789999999999999 99999999999999999997
|
|
| >PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2 | Back alignment and domain information |
|---|
Probab=85.24 E-value=4.2 Score=31.30 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=49.1
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhh--hhhhcCCCc------ccCHHHHHH
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL--LMTRDGGGR------ERTKKEYTE 364 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~g~------~~t~~e~~~ 364 (390)
.+|=|++.++..++|+++...- .|.+++ .+. |..+ .+.+. ....+|++. ...++++.+
T Consensus 3 DvLIHYp~~d~~~~l~~La~~t--~~~~if-TfA-P~T~----------~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~ 68 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASRT--RGSLIF-TFA-PRTP----------LLALMHAIGKLFPRPDRSPRIYPHREEDLRR 68 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHhc--cCcEEE-EEC-CCCH----------HHHHHHHHhccCCCCCCCCcEEEeCHHHHHH
Confidence 4555789899999999987764 355554 222 2211 11111 111233332 236899999
Q ss_pred HHHHCCCCeeEEEecCCcee
Q 016366 365 LAIAAGFKGINFASCVCNLY 384 (390)
Q Consensus 365 ll~~aGf~~~~~~~~~~~~~ 384 (390)
.++++||++.+...+.+++.
T Consensus 69 ~l~~~g~~~~r~~ris~gFY 88 (97)
T PF07109_consen 69 ALAAAGWRIGRTERISSGFY 88 (97)
T ss_pred HHHhCCCeeeecccccCcCh
Confidence 99999999999988876554
|
1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=84.81 E-value=1.6 Score=40.80 Aligned_cols=101 Identities=17% Similarity=0.137 Sum_probs=66.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhC----CCC--CCceEEECCCCCC----CCC-CcEEEe
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDA----PSY--AGVEHVGGNMFES----VPE-GDAILM 291 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a----~~~--~rv~~~~gd~~~~----~p~-~D~i~~ 291 (390)
..++.+|||..++.|.=+..+++... ...++..|+ +.-+... ++. .++.....|.... .+. .|.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45678899999999999999999876 567888886 3333332 222 4577776666542 122 277654
Q ss_pred c------cccccCChhH--------------HHHHHHHHHHhC----CCCcEEEEEec
Q 016366 292 K------WILHCWDDDH--------------CLRILKNCYKAV----PGNGKVIVMNS 325 (390)
Q Consensus 292 ~------~vlh~~~d~~--------------~~~~L~~~~~~L----~pgG~lli~e~ 325 (390)
. .++..-|+-. -.++|+++.+.+ +|||+++-++=
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 2 2232222211 346899999999 99999886553
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PRK10906 DNA-binding transcriptional repressor GlpR; Provisional | Back alignment and domain information |
|---|
Probab=84.70 E-value=0.95 Score=41.60 Aligned_cols=45 Identities=18% Similarity=0.325 Sum_probs=40.7
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
...|.+.|.++|.+++.|||+.+++ .+.-++|-|..|...|++.+
T Consensus 7 ~~~Il~~l~~~~~~~~~ela~~l~v----S~~TiRRdL~~Le~~g~l~r 51 (252)
T PRK10906 7 HDAIIELVKQQGYVSTEELVEHFSV----SPQTIRRDLNDLAEQNKILR 51 (252)
T ss_pred HHHHHHHHHHcCCEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEE
Confidence 4457788888789999999999999 99999999999999999986
|
|
| >TIGR01321 TrpR trp operon repressor, proteobacterial | Back alignment and domain information |
|---|
Probab=84.27 E-value=3.1 Score=31.84 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=34.7
Q ss_pred HHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHh
Q 016366 41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87 (390)
Q Consensus 41 l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~ 87 (390)
-..+.++||+..|.+ +++|-.|||+++|+ ....+.|+-+.|.
T Consensus 39 ~~l~~R~~i~~~Ll~-~~~tQrEIa~~lGi----S~atIsR~sn~lk 80 (94)
T TIGR01321 39 EDLGDRIRIVNELLN-GNMSQREIASKLGV----SIATITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHhCC----ChhhhhHHHhhcc
Confidence 345678999998876 59999999999999 8888888777654
|
This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=84.20 E-value=1.6 Score=41.05 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=39.4
Q ss_pred cceEEEEcCCccHH-HHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEEC----CCCCCCC---CC-cEE
Q 016366 228 VERLVDVGGGFGVT-LSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGG----NMFESVP---EG-DAI 289 (390)
Q Consensus 228 ~~~iLDiG~G~G~~-~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~g----d~~~~~p---~~-D~i 289 (390)
..++||||+|.... ...-++.+ +-++++.|+ +..++.|++. ++|+++.. +++..+. +. |..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999998864 34444444 788888888 7778877752 57888654 3444221 12 899
Q ss_pred EeccccccCChh
Q 016366 290 LMKWILHCWDDD 301 (390)
Q Consensus 290 ~~~~vlh~~~d~ 301 (390)
+|+=-+|.-.++
T Consensus 182 mCNPPFy~s~~e 193 (299)
T PF05971_consen 182 MCNPPFYSSQEE 193 (299)
T ss_dssp EE-----SS---
T ss_pred ecCCccccChhh
Confidence 999888875443
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PRK10411 DNA-binding transcriptional activator FucR; Provisional | Back alignment and domain information |
|---|
Probab=83.44 E-value=1.6 Score=39.78 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=39.7
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
..|.+.|.+++.++.+|||+.+++ .+.-++|.|..|...|.+.+
T Consensus 7 ~~Il~~l~~~~~~~~~eLa~~l~V----S~~TiRRdL~~L~~~~~l~r 50 (240)
T PRK10411 7 QAIVDLLLNHTSLTTEALAEQLNV----SKETIRRDLNELQTQGKILR 50 (240)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 347788887789999999999999 99999999999999999975
|
|
| >TIGR00498 lexA SOS regulatory protein LexA | Back alignment and domain information |
|---|
Probab=83.22 E-value=1.8 Score=38.05 Aligned_cols=51 Identities=24% Similarity=0.239 Sum_probs=39.6
Q ss_pred HhChhHHHhh----cC-CCCHHHHHHHhccCCCCC-CCcHHHHHHHHhcCcceeecccCCCccee
Q 016366 46 QLGVFEIIAK----AG-ELSAPEIAAQLQAQNVKA-PMMLDRMLRLLVSHRVLECSVSGGERLYA 104 (390)
Q Consensus 46 ~lglfd~L~~----~g-~~t~~eLa~~~~~~~~~~-~~~l~r~L~~L~~~gll~~~~~~~~~~y~ 104 (390)
+..|++.|.+ +| +.|..|||+.+|+ . +..+.+.|+.|...|++.. .++.|+
T Consensus 8 q~~iL~~l~~~~~~~~~~~~~~ela~~~~~----~s~~tv~~~l~~L~~~g~i~~----~~~~~~ 64 (199)
T TIGR00498 8 QQEVLDLIRAHIESTGYPPSIREIARAVGL----RSPSAAEEHLKALERKGYIER----DPGKPR 64 (199)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHhCC----CChHHHHHHHHHHHHCCCEec----CCCCCC
Confidence 4445555542 23 7899999999999 8 8999999999999999984 455554
|
LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA. |
| >PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks | Back alignment and domain information |
|---|
Probab=82.95 E-value=1.4 Score=32.15 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=39.9
Q ss_pred HHhChhHHHhhcC--CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g--~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..+++.++..+ +++..+|++.++. |++.+-..++.|...|++..
T Consensus 3 ~~~~~Le~I~rsR~~Gi~q~~L~~~~~~----D~r~i~~~~k~L~~~gLI~k 50 (75)
T PF04182_consen 3 IQYCLLERIARSRYNGITQSDLSKLLGI----DPRSIFYRLKKLEKKGLIVK 50 (75)
T ss_pred hHHHHHHHHHhcCCCCEehhHHHHHhCC----CchHHHHHHHHHHHCCCEEE
Confidence 4556777777643 8999999999999 99999999999999999985
|
This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms. |
| >PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B | Back alignment and domain information |
|---|
Probab=82.78 E-value=1.5 Score=28.08 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=27.3
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHH
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLL 86 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L 86 (390)
++..|+..|.+++..|..+||+++|+ .+..+.+=++.|
T Consensus 4 ~D~~Il~~Lq~d~r~s~~~la~~lgl----S~~~v~~Ri~rL 41 (42)
T PF13404_consen 4 LDRKILRLLQEDGRRSYAELAEELGL----SESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHH-TTS-HHHHHHHHTS-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHCc----CHHHHHHHHHHh
Confidence 56678889988889999999999999 666665544443
|
... |
| >PF14394 DUF4423: Domain of unknown function (DUF4423) | Back alignment and domain information |
|---|
Probab=82.45 E-value=2.1 Score=36.78 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=39.4
Q ss_pred CCHHHHHHHh--ccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccc
Q 016366 59 LSAPEIAAQL--QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKY 111 (390)
Q Consensus 59 ~t~~eLa~~~--~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~ 111 (390)
.++++||+++ ++ ...-++.-|+.|+.+|+++. .+++.|..|..+-.
T Consensus 40 ~d~~~iak~l~p~i----s~~ev~~sL~~L~~~gli~k---~~~g~y~~t~~~l~ 87 (171)
T PF14394_consen 40 PDPEWIAKRLRPKI----SAEEVRDSLEFLEKLGLIKK---DGDGKYVQTDKSLT 87 (171)
T ss_pred CCHHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEE---CCCCcEEEecceee
Confidence 3899999999 99 89999999999999999997 35578988875543
|
|
| >PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A | Back alignment and domain information |
|---|
Probab=82.41 E-value=1.1 Score=32.39 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=43.0
Q ss_pred HHHHHHHHhChhH-----HHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecC
Q 016366 39 MATQAAIQLGVFE-----IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (390)
Q Consensus 39 ~~l~~a~~lglfd-----~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t 106 (390)
.++..+.+.|..+ .+.. ++|.++||..+|+ ....+.+.|+.|...|++.. ..+.+...
T Consensus 6 ~Ll~l~~~~~~~~~~~~~~~~~--~lt~~~iA~~~g~----sr~tv~r~l~~l~~~g~I~~----~~~~i~I~ 68 (76)
T PF13545_consen 6 FLLELAERFGRRQDGDGIRIPL--PLTQEEIADMLGV----SRETVSRILKRLKDEGIIEV----KRGKIIIL 68 (76)
T ss_dssp HHHHHHHHHEEEEETTEEEEEE--ESSHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE----ETTEEEES
T ss_pred HHHHHHHHHCCCCCCCCceEEe--cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE----cCCEEEEC
Confidence 4555566666541 1122 8999999999999 99999999999999999985 34454443
|
... |
| >TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family | Back alignment and domain information |
|---|
Probab=82.35 E-value=2.2 Score=34.86 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=39.0
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHh----ccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQL----QAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~----~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.|+-|...|-..|+.|+.+|.+.+ ++ ...-+..+|+-|...|+|.+.
T Consensus 5 ~E~~VM~vlW~~~~~t~~eI~~~l~~~~~~----~~tTv~T~L~rL~~KG~v~~~ 55 (130)
T TIGR02698 5 AEWEVMRVVWTLGETTSRDIIRILAEKKDW----SDSTIKTLLGRLVDKGCLTTE 55 (130)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhccCC----cHHHHHHHHHHHHHCCceeee
Confidence 466778888777899999977766 56 788899999999999999864
|
This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI. |
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=82.09 E-value=1.3 Score=44.47 Aligned_cols=70 Identities=9% Similarity=0.105 Sum_probs=56.9
Q ss_pred HHHhChhHHHhh-cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccccCCCC
Q 016366 44 AIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDG 118 (390)
Q Consensus 44 a~~lglfd~L~~-~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~~~~ 118 (390)
..+..|+..|.+ .+..+.++||+.+|+ ++..+.+.+..|.+.|+++... .....|.+|+.+..++....+
T Consensus 6 ~~e~~iL~~l~~~~~~~~~~~la~~~~~----~~~~v~~~~~~L~~kg~v~~~~-~~~~~~~LT~eG~~~~~~G~P 76 (494)
T PTZ00326 6 LEENTILSKLESENEIVNSLALAESLNI----DHQKVVGAIKSLESANYITTEM-KKSNTWTLTEEGEDYLKNGSP 76 (494)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEE-EEEEEEEECHHHHHHHHcCCH
Confidence 345667777876 347999999999999 9999999999999999997642 245679999999988877654
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=81.91 E-value=5.4 Score=36.03 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=0.0
Q ss_pred ceEEECCCCC---CCCCC--cEEEec-------------cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCc
Q 016366 272 VEHVGGNMFE---SVPEG--DAILMK-------------WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEV 333 (390)
Q Consensus 272 v~~~~gd~~~---~~p~~--D~i~~~-------------~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~ 333 (390)
++++.||..+ .+|.. |+|+.. .+-.....+....++.+++|+|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i----------- 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS----------- 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE-----------
Q ss_pred chHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 334 SSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 334 ~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
.........+..+++++||.+....
T Consensus 71 -------------------f~~~~~~~~~~~al~~~GF~l~~~I 95 (227)
T PRK13699 71 -------------------FYGWNRVDRFMAAWKNAGFSVVGHL 95 (227)
T ss_pred -------------------EeccccHHHHHHHHHHCCCEEeeEE
|
|
| >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.87 E-value=1.6 Score=38.61 Aligned_cols=34 Identities=38% Similarity=0.505 Sum_probs=32.0
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+.|++|+|+++|+ ...-.+|.|.+|++.|++..+
T Consensus 173 ~~Taeela~~~gi----SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 173 ELTAEELAQALGI----SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred ccCHHHHHHHhCc----cHHHHHHHHHHHHhcCeeeEE
Confidence 9999999999999 899999999999999999753
|
|
| >PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional | Back alignment and domain information |
|---|
Probab=81.56 E-value=1.4 Score=40.64 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=41.0
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
+..|.+.|.++|.+++.|||+.+++ .+.-++|=|+.|...|++.+
T Consensus 7 ~~~Il~~L~~~~~v~v~eLa~~l~V----S~~TIRRDL~~Le~~g~l~r 51 (256)
T PRK10434 7 QAAILEYLQKQGKTSVEELAQYFDT----TGTTIRKDLVILEHAGTVIR 51 (256)
T ss_pred HHHHHHHHHHcCCEEHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 4457888988889999999999999 99999999999999999986
|
|
| >PF13730 HTH_36: Helix-turn-helix domain | Back alignment and domain information |
|---|
Probab=81.16 E-value=1.3 Score=29.87 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=28.1
Q ss_pred CCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcce
Q 016366 59 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL 92 (390)
Q Consensus 59 ~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll 92 (390)
.|.+.||+.+|+ ..+.+.+.++.|+..|++
T Consensus 26 pS~~~la~~~g~----s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 26 PSQETLAKDLGV----SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred cCHHHHHHHHCc----CHHHHHHHHHHHHHCcCC
Confidence 489999999999 999999999999999985
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=81.02 E-value=2.8 Score=38.62 Aligned_cols=75 Identities=12% Similarity=0.202 Sum_probs=48.8
Q ss_pred HHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcE
Q 016366 241 TLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGK 319 (390)
Q Consensus 241 ~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ 319 (390)
++..+.++.++.++++.|. +..++.+.+.+-+.-...+ .+.+.++|+|+++- |-....++|+++...+++|+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCCCcE
Confidence 4677888889999999998 7777777655444443333 22344459988765 445577888888888888775
Q ss_pred EE
Q 016366 320 VI 321 (390)
Q Consensus 320 ll 321 (390)
+.
T Consensus 75 v~ 76 (258)
T PF02153_consen 75 VT 76 (258)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK05638 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=81.00 E-value=2 Score=42.96 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=47.0
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhc--cCCCCCCCcHHHHHHHHhcCcceeec-ccCCCcceecCccccccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQ--AQNVKAPMMLDRMLRLLVSHRVLECS-VSGGERLYALNPVSKYFV 113 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~--~~~~~~~~~l~r~L~~L~~~gll~~~-~~~~~~~y~~t~~s~~l~ 113 (390)
++.|+..|.+ ++.+.-||++.++ + .+..+.+.|+.|...|+|... .......|++|+.+..+.
T Consensus 373 r~~IL~~L~~-~~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~~~g~~~~Y~Lt~~g~~~l 438 (442)
T PRK05638 373 KLEILKILSE-REMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAYRKGRRVYYKLTEKGRRLL 438 (442)
T ss_pred HHHHHHHHhh-CCccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEeecCCCcEEEEECcHHHHHH
Confidence 3446677776 5899999999998 7 888999999999999999742 111122488888776444
|
|
| >PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=80.88 E-value=2.2 Score=42.29 Aligned_cols=44 Identities=20% Similarity=0.138 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
.|.|.++|++++++ +++.++++|+.|...|++.+ .+++.|.+.+
T Consensus 309 ~~~t~~~La~~l~~----~~~~v~~iL~~L~~agLI~~---~~~g~~~l~r 352 (412)
T PRK04214 309 KALDVDEIRRLEPM----GYDELGELLCELARIGLLRR---GERGQWVLAR 352 (412)
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCeEe---cCCCceEecC
Confidence 39999999999999 99999999999999999985 3445676554
|
|
| >PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional | Back alignment and domain information |
|---|
Probab=80.86 E-value=2.1 Score=40.72 Aligned_cols=58 Identities=14% Similarity=0.105 Sum_probs=44.5
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
...|.+.|..+.+.+.++||+++++ .+..+.+.++.|...|++..+ ..+..|++.+..
T Consensus 6 ~~~il~~L~~~~~~s~~~LA~~lgv----sr~tV~~~l~~L~~~G~~i~~--~~~~Gy~L~~~~ 63 (319)
T PRK11886 6 MLQLLSLLADGDFHSGEQLGEELGI----SRAAIWKHIQTLEEWGLDIFS--VKGKGYRLAEPL 63 (319)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceEE--ecCCeEEecCcc
Confidence 3456777776558999999999999 999999999999999994432 233468775543
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=80.78 E-value=8.7 Score=34.19 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=59.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCC-C-eEEEecc-hHHHhhCCCC---------------------------------
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQ-I-KAVNFDL-PHVVQDAPSY--------------------------------- 269 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~-~-~~~~~Dl-~~~~~~a~~~--------------------------------- 269 (390)
+.+-++-|=.||.|.++.-+.--+++ + .+++.|+ +++++.|+++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 56779999999999887776655543 2 3566676 7888877651
Q ss_pred ---------------CCceEEECCCCCCC-------CCC-cEEEecccccc---CC----hhHHHHHHHHHHHhCCCCcE
Q 016366 270 ---------------AGVEHVGGNMFESV-------PEG-DAILMKWILHC---WD----DDHCLRILKNCYKAVPGNGK 319 (390)
Q Consensus 270 ---------------~rv~~~~gd~~~~~-------p~~-D~i~~~~vlh~---~~----d~~~~~~L~~~~~~L~pgG~ 319 (390)
......+.|++++- +.+ |+|+..--..+ |. ..-+.++|..++.+|.+++.
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 11457888998832 123 88876543332 32 34467899999999976677
Q ss_pred EEEEe
Q 016366 320 VIVMN 324 (390)
Q Consensus 320 lli~e 324 (390)
+.+++
T Consensus 210 V~v~~ 214 (246)
T PF11599_consen 210 VAVSD 214 (246)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66644
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus | Back alignment and domain information |
|---|
Probab=80.73 E-value=3 Score=30.10 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=37.4
Q ss_pred ChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 48 glfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.|...++.. ..|.+||-+++|+ +...|...|..|...|++.+
T Consensus 9 ~IL~~ls~~-c~TLeeL~ekTgi----~k~~LlV~LsrL~k~GiI~R 50 (72)
T PF05584_consen 9 KILIILSKR-CCTLEELEEKTGI----SKNTLLVYLSRLAKRGIIER 50 (72)
T ss_pred HHHHHHHhc-cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeee
Confidence 455667764 9999999999999 99999999999999999986
|
|
| >PRK09802 DNA-binding transcriptional regulator AgaR; Provisional | Back alignment and domain information |
|---|
Probab=80.59 E-value=1.6 Score=40.47 Aligned_cols=46 Identities=9% Similarity=0.178 Sum_probs=41.4
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
-...|.+.|..+|.+++.|||+.+++ .+.-++|=|..|...|++.+
T Consensus 18 R~~~Il~~L~~~~~vtv~eLa~~l~V----S~~TIRRDL~~Le~~G~l~r 63 (269)
T PRK09802 18 RREQIIQRLRQQGSVQVNDLSALYGV----STVTIRNDLAFLEKQGIAVR 63 (269)
T ss_pred HHHHHHHHHHHcCCEeHHHHHHHHCC----CHHHHHHHHHHHHhCCCeEE
Confidence 34567888888789999999999999 99999999999999999986
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=80.23 E-value=2 Score=39.24 Aligned_cols=99 Identities=18% Similarity=0.236 Sum_probs=53.7
Q ss_pred CcceEEEEcCCccHHHHHH---HhhC--CCCeEEEecc----hHHHh---------------------------hCCCC-
Q 016366 227 NVERLVDVGGGFGVTLSMI---TSKY--PQIKAVNFDL----PHVVQ---------------------------DAPSY- 269 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l---~~~~--p~~~~~~~Dl----~~~~~---------------------------~a~~~- 269 (390)
-++-|+|+||=.|..+..+ ++.+ ++-++.++|- |+.-. ...+.
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 4578999999999766544 3333 4556788873 22111 11111
Q ss_pred ---CCceEEECCCCCCCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 270 ---AGVEHVGGNMFESVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 270 ---~rv~~~~gd~~~~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
++|+++.|.|.+.+|.. +-|-+.++=.++= +.....|..++..|.|||.+++-|..
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY-esT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY-ESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH-HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccch-HHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 47999999997655532 2222112111222 23568999999999999998875544
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=80.09 E-value=12 Score=34.76 Aligned_cols=122 Identities=8% Similarity=0.014 Sum_probs=71.0
Q ss_pred eEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CC---C-CCcEEEeccccccCChh--
Q 016366 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SV---P-EGDAILMKWILHCWDDD-- 301 (390)
Q Consensus 230 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~---p-~~D~i~~~~vlh~~~d~-- 301 (390)
+++|+-||.|.+...+.+..-+ .+..+|+ +..++..+.+-.-..+.+|+.+ .. . ..|+++...-...++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~-~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~ 80 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE-IVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGK 80 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE-EEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhh
Confidence 6899999999998888876422 2455666 6666655543112256778776 21 2 23999888776655421
Q ss_pred ------HHHHHHHHHHH---hCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 302 ------HCLRILKNCYK---AVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 302 ------~~~~~L~~~~~---~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
....++..+.+ .++| .+++.|.+..-.. ..+....+++.+.|++.||.
T Consensus 81 ~~~~~d~r~~L~~~~~~~i~~~~P--~~~v~ENV~g~~~---------------------~~~~~~~~~i~~~l~~~GY~ 137 (275)
T cd00315 81 RKGFEDTRGTLFFEIIRILKEKKP--KYFLLENVKGLLT---------------------HDNGNTLKVILNTLEELGYN 137 (275)
T ss_pred cCCCCCchHHHHHHHHHHHHhcCC--CEEEEEcCcchhc---------------------cCchHHHHHHHHHHHhCCcE
Confidence 11123333333 3334 3666777632100 01112467788889999998
Q ss_pred eeE
Q 016366 373 GIN 375 (390)
Q Consensus 373 ~~~ 375 (390)
+..
T Consensus 138 ~~~ 140 (275)
T cd00315 138 VYW 140 (275)
T ss_pred EEE
Confidence 643
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 390 | ||||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 1e-101 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 1e-101 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 5e-89 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 1e-67 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 1e-57 | ||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 2e-31 | ||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 6e-30 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 2e-29 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 3e-23 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 3e-23 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 3e-23 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 8e-18 | ||
| 3gwz_A | 369 | Structure Of The Mitomycin 7-O-Methyltransferase Mm | 2e-15 | ||
| 4a6d_A | 353 | Crystal Structure Of Human N-Acetylserotonin Methyl | 1e-12 | ||
| 1qzz_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 1e-12 | ||
| 1tw2_A | 360 | Crystal Structure Of Carminomycin-4-O-Methyltransfe | 9e-11 | ||
| 2ip2_A | 334 | Structure Of The Pyocyanin Biosynthetic Protein Phz | 6e-10 | ||
| 1xds_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 7e-09 | ||
| 1x19_A | 359 | Crystal Structure Of Bchu Involved In Bacteriochlor | 9e-07 | ||
| 3i53_A | 332 | Crystal Structure Of An O-Methyltransferase (Ncsb1) | 4e-05 |
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369 | Back alignment and structure |
|
| >pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353 | Back alignment and structure |
|
| >pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374 | Back alignment and structure |
|
| >pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360 | Back alignment and structure |
|
| >pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334 | Back alignment and structure |
|
| >pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adenosyl-L-Methionine (Sam) And 11-Deoxy- Beta-Rhodomycin (Dbra) Length = 374 | Back alignment and structure |
|
| >pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359 | Back alignment and structure |
|
| >pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From Neocarzinostatin Biosynthesis In Complex With S-Adenosyl-L- Homocysteine (Sah) Length = 332 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 416 bits (1070), Expect = e-145
Identities = 184/399 (46%), Positives = 252/399 (63%), Gaps = 42/399 (10%)
Query: 1 MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA---- 56
MGS + + +EE+ AMQLA VLPMA +AAI+L V EI+AK+
Sbjct: 1 MGSTGNAE---IQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPS 57
Query: 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV-----SGGERLYALNPVSKY 111
G +S EIAAQL N +AP+MLDR+LRLL S+ V+ ++ ERLY L PV K+
Sbjct: 58 GYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKF 117
Query: 112 FVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLK 171
N+DG SL F+ L DKV +E W+ LK
Sbjct: 118 LTKNEDGVSLAPFLLLATDKVLLEPWF------------------------------YLK 147
Query: 172 DAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERL 231
DA++EGGIPFN+ +GM+IF+Y + R N+ +++ M ++STI M++ILE Y GF+ + +
Sbjct: 148 DAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTI 207
Query: 232 VDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILM 291
VDVGGG G SMI +KYP I A+NFDLPHV+QDAP+++GVEH+GG+MF+ VP+GDAI +
Sbjct: 208 VDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFI 267
Query: 292 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD 351
KWI H W D+HCL++LKNCY A+P +GKVIV I+P P+ S A + D L++ +
Sbjct: 268 KWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYN 327
Query: 352 GGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390
GG+ERT+KE+ LA+A+GF+G ASC N Y+MEF K
Sbjct: 328 PGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 405 bits (1042), Expect = e-141
Identities = 163/388 (42%), Positives = 228/388 (58%), Gaps = 38/388 (9%)
Query: 11 AQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE--LSAPEIAAQL 68
+ +E++ A+QLA VLPM + AI+LG+ EI+ AG L+ E+AA+L
Sbjct: 7 STAADMAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKL 66
Query: 69 QAQ-NVKAPMMLDRMLRLLVSHRVLECSV-----SGGERLYALNPVSKYFVSNKDGASLG 122
+ N +AP M+DR+LRLL S+ V+ C V R Y PV K+ N+DG S+
Sbjct: 67 PSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMA 126
Query: 123 HFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFN 182
+ DKV MESWY LKDAV++GGIPFN
Sbjct: 127 ALALMNQDKVLMESWY------------------------------YLKDAVLDGGIPFN 156
Query: 183 RVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTL 242
+ +GM FEY +PRFN ++E M NHS I +++LE Y GF+ + LVDVGGG G T+
Sbjct: 157 KAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATV 216
Query: 243 SMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDH 302
+ I + YP IK VNFDLPHV+ +AP + GV HVGG+MF+ VP GD ILMKWILH W D H
Sbjct: 217 AAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQH 276
Query: 303 CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 362
C +LKNCY A+P +GKV+++ I+P PE + +++ +D++++ + GGRER ++E+
Sbjct: 277 CATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREF 336
Query: 363 TELAIAAGFKGINFASCVCNLYIMEFFK 390
LA AGF G+ N + +EF K
Sbjct: 337 QALARGAGFTGVKSTYIYANAWAIEFTK 364
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 399 bits (1026), Expect = e-138
Identities = 149/403 (36%), Positives = 217/403 (53%), Gaps = 44/403 (10%)
Query: 1 MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-- 58
MG+ ++ Q E+ E+ + AM L +V P AAI L +FEIIAKA
Sbjct: 1 MGNSYITKEDNQISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPG 60
Query: 59 --LSAPEIAAQLQA--QNVKAPMMLDRMLRLLVSHRVLECSVS-----GGERLYALNPVS 109
+S EIA++L A Q+ P LDRMLRLL S+ VL + G ER+Y L+ V
Sbjct: 61 AFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVG 120
Query: 110 KYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLG 169
KY V ++ L F ++ W
Sbjct: 121 KYLVPDESRGYLASFTTFLCYPALLQVWM------------------------------N 150
Query: 170 LKDAVMEGGI-PFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNV 228
K+AV++ I F VHG+ +E+ + + N+ ++++M + M+R+LE Y GF+ +
Sbjct: 151 FKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGI 210
Query: 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDA 288
LVDVGGG G L +I SKYP IK +NFDLP V+++AP +G+EHVGG+MF SVP+GDA
Sbjct: 211 STLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDA 270
Query: 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM 348
+++K + H W D+ C+ L NC+KA+ NGKVI++ I+PE P S ++ S LD L+
Sbjct: 271 MILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMF 330
Query: 349 TRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLY-IMEFFK 390
GGRERT+K+Y +L+ +GF A N +MEF+K
Sbjct: 331 IT-VGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 374 bits (962), Expect = e-129
Identities = 96/379 (25%), Positives = 176/379 (46%), Gaps = 40/379 (10%)
Query: 16 EEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVK 74
+ E ++ + + + M+ + A+++ + II G+ +S + + LQ + K
Sbjct: 8 RKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSK 67
Query: 75 APMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFM 134
+ R++R L + E ++ E YAL S+ V D L + LD
Sbjct: 68 IGN-VRRLMRYLAHNGFFEI-ITKEEESYALTVASELLVRGSDL-CLAPMVECVLDPTLS 124
Query: 135 ESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGI-PFNRVHGMHIFEYA 193
S++ LK + E + F G +++
Sbjct: 125 GSYH------------------------------ELKKWIYEEDLTLFGVTLGSGFWDFL 154
Query: 194 SGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIK 253
NP +N ++++AM + S + + + F +E +VDVGGG G T +I +P++K
Sbjct: 155 DKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLK 214
Query: 254 AVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKA 313
+ FD P VV++ + +VGG+MF S+P DA+L+K+ILH W D CLRILK C +A
Sbjct: 215 CIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEA 274
Query: 314 VPGN---GKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370
V + GKV +++ ++ + + + + L+DV + G+ER ++E+ +L I AG
Sbjct: 275 VTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACL--NGKERNEEEWKKLFIEAG 332
Query: 371 FKGINFASCVCNLYIMEFF 389
F+ + L ++E +
Sbjct: 333 FQHYKISPLTGFLSLIEIY 351
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 366 bits (943), Expect = e-126
Identities = 88/379 (23%), Positives = 146/379 (38%), Gaps = 51/379 (13%)
Query: 14 KHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNV 73
+ + + +S + AMG A +AA +GV + + G + E+AA
Sbjct: 12 RAGGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLV-DGPRTPAELAAATGTD-- 68
Query: 74 KAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVF 133
L R+LRLL V+ S + +AL S+ + + D +F
Sbjct: 69 --ADALRRVLRLLAVRDVVRES----DGRFALTDKGAALRSD-SPVPARAGILMFTDTMF 121
Query: 134 MESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYA 193
+ + A+ F + G + Y
Sbjct: 122 WTMSH------------------------------RVASALGPERPAFADIFGSSLDAYF 151
Query: 194 SGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIK 253
G+ Y+E M S + F + DVGGG G L + ++P ++
Sbjct: 152 DGDAEVEALYYEGMETVSAAEHLILARAG-DFPATGTVADVGGGRGGFLLTVLREHPGLQ 210
Query: 254 AVNFDLPHVV----QDAPSYAG-VEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILK 308
V D VV DAP AG + V G+ VP D ++K ILH W D+ +RIL
Sbjct: 211 GVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILT 270
Query: 309 NCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 368
NC + +P +G+V+V++++VPE + A ++ +D +++ G+ERT E L A
Sbjct: 271 NCRRVMPAHGRVLVIDAVVPEGND----AHQSKEMDFMMLAA-RTGQERTAAELEPLFTA 325
Query: 369 AGFKGINFASCVCNLYIME 387
AG + + I
Sbjct: 326 AGLRLDRVVGTSSVMSIAV 344
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 361 bits (928), Expect = e-124
Identities = 82/385 (21%), Positives = 156/385 (40%), Gaps = 54/385 (14%)
Query: 15 HEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVK 74
+ + + G A A++LGV E++ + G +A +A A
Sbjct: 29 NPGTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE-GPRTATALAEATGAH--- 84
Query: 75 APMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFM 134
L R+LRLL + V + G + L+A N +S + + + +
Sbjct: 85 -EQTLRRLLRLLATVGVFDD--LGHDDLFAQNALSAVLLPD-PASPVATDARFQAAPWHW 140
Query: 135 ESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYAS 194
+W L +V G F+ +G ++
Sbjct: 141 RAWE------------------------------QLTHSVRTGEASFDVANGTSFWQLTH 170
Query: 195 GNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKA 254
+P+ E ++ AM + S ++ Y F VD+GGG G ++ + +P ++
Sbjct: 171 EDPKARELFNRAMGSVSLTEAGQVAAAY-DFSGAATAVDIGGGRGSLMAAVLDAFPGLRG 229
Query: 255 VNFDLPHVVQDAPSYA-------GVEHVGGNMFESVPEG-DAILMKWILHCWDDDHCLRI 306
+ P V ++A E + G+ FE++P+G D L+K +LH WDDD +RI
Sbjct: 230 TLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRI 289
Query: 307 LKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366
L+ A+ + +++V+++++ E P S+ +D+LL+ GG ER++ E+ L
Sbjct: 290 LRRIATAMKPDSRLLVIDNLIDERPAASTL-----FVDLLLLVL-VGGAERSESEFAALL 343
Query: 367 IAAGFKGINFASC-VCNLYIMEFFK 390
+G + C + I+E +
Sbjct: 344 EKSGLRVERSLPCGAGPVRIVEIRR 368
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 359 bits (923), Expect = e-123
Identities = 79/389 (20%), Positives = 142/389 (36%), Gaps = 53/389 (13%)
Query: 15 HEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVK 74
E E ++ ++ +V PMA + A L + + + AG + +A +
Sbjct: 7 GEPLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLL-AGADTLAGLADRTDT---- 61
Query: 75 APMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFM 134
P L R++R L VLE G R +
Sbjct: 62 HPQALSRLVRHLTVVGVLEGGEKQG-RPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHAD 120
Query: 135 ESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYAS 194
++ GL D V G + +G +E S
Sbjct: 121 LAFT------------------------------GLLDVVRTGRPAYAGRYGRPFWEDLS 150
Query: 195 GNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKA 254
+ +++ M +A E + Y + V ++DVGGG G L+ I + P ++
Sbjct: 151 ADVALADSFDALMSCDEDLAYEAPADAY-DWSAVRHVLDVGGGNGGMLAAIALRAPHLRG 209
Query: 255 VNFDLPHVVQDAPSYA-------GVEHVGGNMFESVPEG-DAILMKWILHCWDDDHCLRI 306
+L + A V G+ F+ +P D +L+ ++L W D+ L I
Sbjct: 210 TLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTI 269
Query: 307 LKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366
L+ C +A+ G+++V++ E ++LLD+ ++T GGR RT+ E +LA
Sbjct: 270 LRGCVRALEPGGRLLVLDRADVEGDGADRFF--STLLDLRMLTF-MGGRVRTRDEVVDLA 326
Query: 367 IAAGFKGINF-----ASCVCNLYIMEFFK 390
+AG + + + I+EF
Sbjct: 327 GSAGLALASERTSGSTTLPFDFSILEFTA 355
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 357 bits (917), Expect = e-122
Identities = 99/389 (25%), Positives = 169/389 (43%), Gaps = 48/389 (12%)
Query: 16 EEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVK 74
EE E + H + V MA ++A++LG+ + I G+ ++ E+A+ L+ K
Sbjct: 2 SEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSK 61
Query: 75 APMMLDRMLRLLVSHRVLECSVS-------GGERLYALNPVSKYFVSNKDGASLGHFMAL 127
+L R LRLL + ++ E Y+L P SK +S K L +
Sbjct: 62 VN-ILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPT-CLSSIVKG 119
Query: 128 PLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGG--IPFNRVH 185
L ++ W K E F
Sbjct: 120 ALHPSSLDMWS------------------------------SSKKWFNEDKEQTLFECAT 149
Query: 186 GMHIFEYASGNPRFN--ETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLS 243
G +++ + + + + +AM + S + + E+ F+ +E LVDVGGG G
Sbjct: 150 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 209
Query: 244 MITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHC 303
+I +P +K FD P VV + + VGG+MF+S+P DA+L+KW+LH W+D+
Sbjct: 210 LIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQS 269
Query: 304 LRILKNCYKAVPG---NGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKK 360
L+ILKN +A+ +GKVI+++ + E + D++++T G+ERTK+
Sbjct: 270 LKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTM-FLGKERTKQ 328
Query: 361 EYTELAIAAGFKGINFASCVCNLYIMEFF 389
E+ +L AGF ++E +
Sbjct: 329 EWEKLIYDAGFSSYKITPISGFKSLIEVY 357
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 351 bits (903), Expect = e-120
Identities = 73/367 (19%), Positives = 134/367 (36%), Gaps = 51/367 (13%)
Query: 17 EEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAP 76
++ + + PM + A L + + I AG + +AA+ + P
Sbjct: 12 AARPQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHIL-AGARTVKALAARTDTR----P 66
Query: 77 MMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMES 136
L R++R LV+ +LE + V + + A S
Sbjct: 67 EALLRLIRHLVAIGLLEED---APGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADIS 123
Query: 137 WYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYASGN 196
+ L DA+ G + ++G +E +G
Sbjct: 124 FT------------------------------RLPDAIRTGRPTYESIYGKPFYEDLAGR 153
Query: 197 PRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVN 256
P ++ + +A + Y + NV ++DVGGG G + I + P + A
Sbjct: 154 PDLRASFDSLLACDQDVAFDAPAAAY-DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATV 212
Query: 257 FDLPHVVQDAPSYA-------GVEHVGGNMFESVPEG-DAILMKWILHCWDDDHCLRILK 308
++ V A SY V+ V G+ FE +P DAI++ ++L W D +RIL
Sbjct: 213 LEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILT 272
Query: 309 NCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 368
C +A+ G++++ + LD+ ++ GG RT++++ LA +
Sbjct: 273 RCAEALEPGGRILIHERDDLHENSFNEQFT---ELDLRMLVF-LGGALRTREKWDGLAAS 328
Query: 369 AGFKGIN 375
AG
Sbjct: 329 AGLVVEE 335
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 348 bits (895), Expect = e-119
Identities = 77/375 (20%), Positives = 137/375 (36%), Gaps = 56/375 (14%)
Query: 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDR 81
+ + ++ + PMA + A L V + IA AG +A EIA+ A LDR
Sbjct: 3 KRAAHIGLRALADLATPMAVRVAATLRVADHIA-AGHRTAAEIASAAGAH----ADSLDR 57
Query: 82 MLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIII 141
+LR LV+ + G+ +Y L + + +
Sbjct: 58 LLRHLVAVGLFTRD---GQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFV--- 111
Query: 142 LSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNE 201
L ++ G + +G +E +P +
Sbjct: 112 ---------------------------ELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSA 144
Query: 202 TYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPH 261
++ M +H + I Y + + +VDVGGG G LS + + + + DL
Sbjct: 145 SFDTLMSHHLELDYTGIAAKY-DWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQG 203
Query: 262 VVQDAPSY-------AGVEHVGGNMFESVPEG-DAILMKWILHCWDDDHCLRILKNCYKA 313
A + V G+ F+ +P G ++ +LH WDD + IL+ C +A
Sbjct: 204 PASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEA 263
Query: 314 VPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKG 373
G V+V+ ++ + + +D+ ++T GG+ER+ E ELA AG
Sbjct: 264 AGSGGVVLVIEAVAGD-------EHAGTGMDLRMLTY-FGGKERSLAELGELAAQAGLAV 315
Query: 374 INFASCVCNLYIMEF 388
+ + I+E
Sbjct: 316 RAA-HPISYVSIVEM 329
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 343 bits (882), Expect = e-117
Identities = 82/381 (21%), Positives = 132/381 (34%), Gaps = 57/381 (14%)
Query: 18 EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPM 77
+ + +Q+ G A +LG+ ++I G S +AA + +
Sbjct: 2 NNSNLAAARNLIQVVTGEWKSRCVYVATRLGLADLIES-GIDSDETLAAAVGSD----AE 56
Query: 78 MLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESW 137
+ R++RLLV+ + + YA P S + S M L + F +W
Sbjct: 57 RIHRLMRLLVAFEIFQGD---TRDGYANTPTSHLLRDVEG--SFRD-MVLFYGEEFHAAW 110
Query: 138 YIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYASGNP 197
+A++ G F G + Y P
Sbjct: 111 T------------------------------PACEALLSGTPGFELAFGEDFYSYLKRCP 140
Query: 198 RFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNF 257
+ AM S +A I + F+ VDVGGG G I P + V
Sbjct: 141 DAGRRFLLAM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVML 197
Query: 258 DLPHVVQDAPSYA-------GVEHVGGNMFESVPEG-DAILMKWILHCWDDDHCLRILKN 309
D + A V VGG+M + VP D L+ I+ D+ LR+L N
Sbjct: 198 DREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGN 257
Query: 310 CYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA 369
C +A+ G+G+V+V+ + S + + L DV L GR RT +E +L
Sbjct: 258 CREAMAGDGRVVVIERTISA----SEPSPMSVLWDVHLFMA-CAGRHRTTEEVVDLLGRG 312
Query: 370 GFKGINFASCVCNLYIMEFFK 390
GF ++ +
Sbjct: 313 GFAVERIVDLPMETRMIVAAR 333
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 298 bits (766), Expect = 2e-99
Identities = 60/367 (16%), Positives = 131/367 (35%), Gaps = 55/367 (14%)
Query: 17 EEEEEEESYSHAMQLAM-GVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKA 75
+ Y A +L G++ +AAI+L +F +A+ G +AA +
Sbjct: 23 SNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE-GPKDLATLAADTGS----V 77
Query: 76 PMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFME 135
P L+ +L L RV+ + ++L + Y S +
Sbjct: 78 PPRLEMLLETLRQMRVINLE----DGKWSLTEFADYMFS-PTPKEPNLHQTPVAKAMAFL 132
Query: 136 SWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYASG 195
+ +GL AV + Y
Sbjct: 133 AD---------------------------DFYMGLSQAVRGQK------NFKGQVPYPPV 159
Query: 196 NPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAV 255
N + E +++ A++ +LE V++++DVGGG G + + +P++ +
Sbjct: 160 TREDNLYFEEIHRSNAKFAIQLLLEEA-KLDGVKKMIDVGGGIGDISAAMLKHFPELDST 218
Query: 256 NFDLPHVVQDAPSYAG-------VEHVGGNMF-ESVPEGDAILMKWILHCWDDDHCLRIL 307
+LP + A + + +++ ES PE DA+L IL+ ++ +
Sbjct: 219 ILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMC 278
Query: 308 KNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 367
K + A+ G++++++ ++ + + +L + + + Y E+
Sbjct: 279 KKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPF--SVLGFKEQARYKEILE 336
Query: 368 AAGFKGI 374
+ G+K +
Sbjct: 337 SLGYKDV 343
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 283 bits (725), Expect = 1e-93
Identities = 59/355 (16%), Positives = 114/355 (32%), Gaps = 56/355 (15%)
Query: 29 MQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVS 88
A +AA++L VF I++ G S+ +A + Q + + LV
Sbjct: 11 FNTVNAYQRSAAIKAAVELNVFTAISQ-GIESSQSLAQKCQTS----ERGMRMLCDYLVI 65
Query: 89 HRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFP 148
+ Y L S F+ + +G + L + +
Sbjct: 66 IGFMTKQ----AEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFN---------- 111
Query: 149 LSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMF 208
L AV++GG + + +F + M
Sbjct: 112 --------------------DLTAAVLKGGTAISSEGTL--SPEHPVWVQFAKAMSPMMA 149
Query: 209 NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS 268
N + + + + E+ +++D+ G+ + P + D V++ A
Sbjct: 150 NPAQLIAQLVNENKIE---PLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKE 206
Query: 269 YAG-------VEHVGGNMFESV--PEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGK 319
A + G+ FE + D +L+ LH +D C ++L+ A+ GK
Sbjct: 207 NARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGK 266
Query: 320 VIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 374
VIV + I + + ++++ G T EY + AGF
Sbjct: 267 VIVFDFIPNSDR---ITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHS 318
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 273 bits (701), Expect = 1e-89
Identities = 57/380 (15%), Positives = 134/380 (35%), Gaps = 58/380 (15%)
Query: 10 LAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-LSAPEIAAQL 68
++ + +E+ E+ A ++A G V+ ++ ++ G+F++++ E + EI+ +
Sbjct: 1 MSLRYTKEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRT 60
Query: 69 QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALP 128
+L ++ + E Y L + +++K F
Sbjct: 61 GLT----RYAAQVLLEASLTIGTILLE----EDRYVLAKAGWFLLNDKMARVNMEF---- 108
Query: 129 LDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMH 188
V + + L++A++ G +V G
Sbjct: 109 NHDVNYQGLF------------------------------HLEEALLNGRPEGLKVFGEW 138
Query: 189 --IFEYASGNP-RFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMI 245
I+E S P + +++ +S + + LE + +RL+D+GG G +
Sbjct: 139 PTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIV-FSHHPKRLLDIGGNTGKWATQC 197
Query: 246 TSKYPQIKAVNFDLPHVVQDAPSYAG-------VEHVGGNMFE---SVPEG-DAILMKWI 294
+++ DLP ++ + G N+ + P G DA+ M
Sbjct: 198 VQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQF 257
Query: 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGG 354
L C+ ++ + IL +++ + KV +M ++ +++ T + +G
Sbjct: 258 LDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNS 317
Query: 355 RERTKKEYTELAIAAGFKGI 374
+ + AG +
Sbjct: 318 KMFHSDDLIRCIENAGLEVE 337
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 263 bits (675), Expect = 6e-86
Identities = 44/369 (11%), Positives = 112/369 (30%), Gaps = 62/369 (16%)
Query: 17 EEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAP 76
E++ S ++L+ A+ +F++ + E+AA
Sbjct: 17 EDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQTG--RTPAEVAASFGMV----E 70
Query: 77 MMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMES 136
+L L + +L + +++ +++ +G + + ++
Sbjct: 71 GKAAILLHALAALGLLTKE----GDAFRNTALTERYLTTTSADYIGPI--VEHQYLQWDN 124
Query: 137 WYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYASGN 196
W L + + + + +
Sbjct: 125 WP------------------------------RLGEILRSE-----KPLAFQQESRFAHD 149
Query: 197 PRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVN 256
R + +++AM S ++ + E F ++D+ GG G L+ + ++PQ+
Sbjct: 150 TRARDAFNDAMVRLSQPMVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQI 208
Query: 257 FDLPHVVQDAPSYAG-------VEHVGGNMFESVPEG----DAILMKWILHCWDDDHCLR 305
+DLP A VE N+ ++ D +++ LH +D
Sbjct: 209 WDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREARE 268
Query: 306 ILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365
++ + V G ++++ + + ++ + +M G +
Sbjct: 269 VIGHAAGLVKPGGALLILTMT---MNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGV 325
Query: 366 AIAAGFKGI 374
AG
Sbjct: 326 VRDAGLAVG 334
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 2e-07
Identities = 27/182 (14%), Positives = 55/182 (30%), Gaps = 26/182 (14%)
Query: 201 ETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL 259
N S ++R L +D G G G + ++ V+
Sbjct: 53 GHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDIT- 111
Query: 260 PHVVQDAPSYAG------VEHVGGNMFESVPEG---DAILMKWILHCWDDDHCLRILKNC 310
+ A +Y G + + + PE D I ++W++ D H L+ C
Sbjct: 112 EDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRC 171
Query: 311 YKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370
++ NG +++ +++ E + R + +AG
Sbjct: 172 KGSLRPNGIIVIKDNMAQEGVI---------------LDDVDSSVCRDLDVVRRIICSAG 216
Query: 371 FK 372
Sbjct: 217 LS 218
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 4e-05
Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 21/150 (14%)
Query: 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAG----VEHVGGNMFESVPE 285
R +D G G G + +K + + H++++A + + +M +
Sbjct: 96 RALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLP 155
Query: 286 G---DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL 342
D I+++W D ++ K+C +A+ NG + +
Sbjct: 156 PNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTG------------- 202
Query: 343 LDVLLMTRDGGGRERTKKEYTELAIAAGFK 372
D L+ ++ R+ Y L +G +
Sbjct: 203 -DRFLVDKEDSSLTRSDIHYKRLFNESGVR 231
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 1e-04
Identities = 29/178 (16%), Positives = 64/178 (35%), Gaps = 23/178 (12%)
Query: 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYA-- 270
+E++L H + ++++ G G G ++ P + + D+ P ++ A
Sbjct: 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEK 83
Query: 271 -GVEHVG---GNMFE-SVPEG--DAILMKWILHCWDD-----DHCLRILKNCYKAVPGNG 318
G+++V N+F + D I + ++L ++LK PG G
Sbjct: 84 NGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLK------PG-G 136
Query: 319 KVIVMNSIVPEIPEVSSAARETSLLDVLL-MTRDGGGRERTKKEYTELAIAAGFKGIN 375
+ V+ + + L+ + G ++ L +GF+ I
Sbjct: 137 TITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIR 194
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 4e-04
Identities = 24/177 (13%), Positives = 59/177 (33%), Gaps = 18/177 (10%)
Query: 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA----PSYA 270
+ ++D+G G G+ + + KYP+ D+ +++ A
Sbjct: 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL 92
Query: 271 GVEHVGGNMFESVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328
V+++ + + E D ++ +H +D+ + K Y + +G I + +
Sbjct: 93 KVKYIEADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHG 152
Query: 329 EIPEVSSAARETSLLDVLLM-----------TRDGGGRERTKKEYTELAIAAGFKGI 374
E + + + V R ++ + AGF+ +
Sbjct: 153 ETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDV 209
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 390 | |||
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 100.0 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 100.0 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 100.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 100.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 100.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 100.0 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 100.0 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 100.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 100.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 100.0 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 100.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.86 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.83 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.79 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.77 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.76 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.76 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.75 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.74 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.74 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.74 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.74 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.73 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.73 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.73 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.72 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.72 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.72 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.71 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.71 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.71 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.7 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.7 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.7 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.7 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.7 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.7 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.69 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.69 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.69 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.69 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.68 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.68 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.68 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.68 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.68 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.68 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.67 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.67 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.67 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.67 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.66 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.66 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.66 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.65 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.65 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.65 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.64 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.64 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.64 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.64 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.64 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.63 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.62 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.62 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.62 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.6 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.6 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.6 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.6 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.59 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.59 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.57 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.56 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.56 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.53 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.52 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.52 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.52 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.52 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.51 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.51 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.51 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.5 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.5 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.5 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.49 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.49 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.48 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.48 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.47 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.47 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.46 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.45 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.45 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.45 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.44 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.42 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.41 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.41 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.4 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.38 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.37 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.36 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.36 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.36 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.35 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.35 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.35 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.34 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.33 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.32 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.31 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.31 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.3 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.3 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.29 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.29 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.28 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.28 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.28 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.28 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.28 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.28 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.27 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.27 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.27 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.27 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.26 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.26 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.25 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.25 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.25 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.24 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.24 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.23 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.23 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.23 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.23 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.23 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.22 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.22 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.21 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.21 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.2 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.2 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.2 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.19 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.19 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.18 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.17 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.16 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.16 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.16 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.16 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.15 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.15 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.14 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.14 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.13 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.12 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.12 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.11 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.11 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.11 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.11 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.1 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.1 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.1 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.1 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.1 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.09 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.09 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.08 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.08 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.07 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.07 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.07 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.07 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.07 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.06 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.05 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.04 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.04 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.04 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.03 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.02 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.01 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.01 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.0 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.0 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.0 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.99 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.99 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.99 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.98 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.98 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.96 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.96 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.95 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.94 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.94 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.94 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.94 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.93 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.93 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.93 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.92 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.92 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.92 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.92 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.91 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.9 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.9 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.9 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.88 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.87 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.87 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.86 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.85 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.82 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.8 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.79 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.78 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.78 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.76 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.76 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.76 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.75 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.74 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.74 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.72 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.72 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.66 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.65 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.63 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.63 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.6 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.59 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.58 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.5 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.47 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.44 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.44 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.42 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.42 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.42 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.41 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.38 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.37 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.36 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.35 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.34 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.32 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.32 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.32 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.3 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.29 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.27 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.26 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.23 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.23 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.23 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.23 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 98.12 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.08 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.05 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.98 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.94 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.93 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.93 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.89 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.88 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.88 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.72 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.69 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.68 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.68 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.61 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.57 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.52 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.39 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.39 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.38 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.37 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.36 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.36 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.25 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 97.2 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.18 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.1 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.08 | |
| 1xmk_A | 79 | Double-stranded RNA-specific adenosine deaminase; | 97.07 | |
| 3b73_A | 111 | PHIH1 repressor-like protein; winged-helix-turn-he | 97.05 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.01 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.99 | |
| 3pqk_A | 102 | Biofilm growth-associated repressor; helix-turn-he | 96.74 | |
| 2heo_A | 67 | Z-DNA binding protein 1; protein DLM1-Z-DNA comple | 96.72 | |
| 1y0u_A | 96 | Arsenical resistance operon repressor, putative; s | 96.72 | |
| 3cuo_A | 99 | Uncharacterized HTH-type transcriptional regulato; | 96.58 | |
| 1u2w_A | 122 | CADC repressor, cadmium efflux system accessory pr | 96.57 | |
| 3jth_A | 98 | Transcription activator HLYU; transcription factor | 96.55 | |
| 1qgp_A | 77 | Protein (double stranded RNA adenosine deaminase); | 96.47 | |
| 3ech_A | 142 | MEXR, multidrug resistance operon repressor; winge | 96.45 | |
| 2htj_A | 81 | P fimbrial regulatory protein KS71A; winged helix- | 96.43 | |
| 1qbj_A | 81 | Protein (double-stranded RNA specific adenosine D | 96.42 | |
| 1ub9_A | 100 | Hypothetical protein PH1061; helix-turn-helix moti | 96.35 | |
| 3f6o_A | 118 | Probable transcriptional regulator, ARSR family pr | 96.26 | |
| 2hzt_A | 107 | Putative HTH-type transcriptional regulator YTCD; | 96.1 | |
| 1tbx_A | 99 | ORF F-93, hypothetical 11.0 kDa protein; sulfolobu | 96.09 | |
| 2oqg_A | 114 | Possible transcriptional regulator, ARSR family P; | 96.07 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.06 | |
| 1r1u_A | 106 | CZRA, repressor protein; zinc, DNA binding, transc | 96.01 | |
| 2jsc_A | 118 | Transcriptional regulator RV1994C/MT2050; cadmium, | 96.01 | |
| 3k0l_A | 162 | Repressor protein; helix-turn-helix, structural ge | 96.0 | |
| 2kko_A | 108 | Possible transcriptional regulatory protein (possi | 95.97 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 95.96 | |
| 3g3z_A | 145 | NMB1585, transcriptional regulator, MARR family; t | 95.96 | |
| 3kp7_A | 151 | Transcriptional regulator TCAR; multiple drug resi | 95.94 | |
| 1xn7_A | 78 | Hypothetical protein YHGG; alpha+beta, GFT structu | 95.94 | |
| 2k02_A | 87 | Ferrous iron transport protein C; FEOC, iron-sulfu | 95.8 | |
| 3nrv_A | 148 | Putative transcriptional regulator (MARR/EMRR FAM; | 95.8 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.79 | |
| 3mq0_A | 275 | Transcriptional repressor of the blcabc operon; he | 95.77 | |
| 2qww_A | 154 | Transcriptional regulator, MARR family; YP_013417. | 95.77 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.75 | |
| 3f6v_A | 151 | Possible transcriptional regulator, ARSR family pr | 95.73 | |
| 3df8_A | 111 | Possible HXLR family transcriptional factor; APC89 | 95.72 | |
| 1r1t_A | 122 | Transcriptional repressor SMTB; zinc, transcriptio | 95.69 | |
| 3bja_A | 139 | Transcriptional regulator, MARR family, putative; | 95.69 | |
| 3bdd_A | 142 | Regulatory protein MARR; putative multiple antibio | 95.64 | |
| 4a5n_A | 131 | Uncharacterized HTH-type transcriptional regulato; | 95.59 | |
| 3oop_A | 143 | LIN2960 protein; protein structure initiative, PSI | 95.54 | |
| 2nyx_A | 168 | Probable transcriptional regulatory protein, RV14; | 95.54 | |
| 2fsw_A | 107 | PG_0823 protein; alpha-beta structure, helix-turn- | 95.54 | |
| 1on2_A | 142 | Transcriptional regulator MNTR; helix-turn-helix, | 95.5 | |
| 2xrn_A | 241 | HTH-type transcriptional regulator TTGV; DNA-bindi | 95.46 | |
| 2wte_A | 244 | CSA3; antiviral protein, viral resistance, winged | 95.46 | |
| 1jgs_A | 138 | Multiple antibiotic resistance protein MARR; trans | 95.45 | |
| 1z7u_A | 112 | Hypothetical protein EF0647; winged-helix-turn-hel | 95.44 | |
| 3bpv_A | 138 | Transcriptional regulator; MARR, DNA binding, tran | 95.4 | |
| 3hsr_A | 140 | HTH-type transcriptional regulator SARZ; helix-tur | 95.37 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 95.36 | |
| 2nnn_A | 140 | Probable transcriptional regulator; structural gen | 95.33 | |
| 1s3j_A | 155 | YUSO protein; structural genomics, MARR transcript | 95.32 | |
| 1oyi_A | 82 | Double-stranded RNA-binding protein; (alpha+beta) | 95.29 | |
| 2jt1_A | 77 | PEFI protein; solution structure, winged helix-tur | 95.28 | |
| 2zkz_A | 99 | Transcriptional repressor PAGR; protein-DNA, HTH m | 95.27 | |
| 2rdp_A | 150 | Putative transcriptional regulator MARR; PFAM PF01 | 95.24 | |
| 2gxg_A | 146 | 146AA long hypothetical transcriptional regulator; | 95.24 | |
| 2hr3_A | 147 | Probable transcriptional regulator; MCSG, structur | 95.23 | |
| 3tgn_A | 146 | ADC operon repressor ADCR; helix-turn-helix, trans | 95.23 | |
| 3f3x_A | 144 | Transcriptional regulator, MARR family, putative; | 95.23 | |
| 1mkm_A | 249 | ICLR transcriptional regulator; structural genomic | 95.23 | |
| 4hbl_A | 149 | Transcriptional regulator, MARR family; HTH, trans | 95.21 | |
| 2fbh_A | 146 | Transcriptional regulator PA3341; MARR, transcript | 95.19 | |
| 2bv6_A | 142 | MGRA, HTH-type transcriptional regulator MGRA; mul | 95.17 | |
| 3eco_A | 139 | MEPR; mutlidrug efflux pump regulator winged helix | 95.16 | |
| 3cdh_A | 155 | Transcriptional regulator, MARR family; helix-turn | 95.13 | |
| 1lj9_A | 144 | Transcriptional regulator SLYA; HTH DNA binding pr | 95.12 | |
| 3s2w_A | 159 | Transcriptional regulator, MARR family; structural | 95.11 | |
| 3bj6_A | 152 | Transcriptional regulator, MARR family; helix-turn | 95.1 | |
| 2a61_A | 145 | Transcriptional regulator TM0710; APC4350, MCSG, m | 95.09 | |
| 2fu4_A | 83 | Ferric uptake regulation protein; DNA binding doma | 95.08 | |
| 1yyv_A | 131 | Putative transcriptional regulator; reductive meth | 95.07 | |
| 2eth_A | 154 | Transcriptional regulator, putative, MAR family; M | 95.07 | |
| 2fa5_A | 162 | Transcriptional regulator MARR/EMRR family; multip | 95.06 | |
| 3jw4_A | 148 | Transcriptional regulator, MARR/EMRR family; DNA-b | 95.05 | |
| 2y75_A | 129 | HTH-type transcriptional regulator CYMR; DNA bindi | 95.05 | |
| 3r4k_A | 260 | Transcriptional regulator, ICLR family; DNA/RNA-bi | 95.01 | |
| 3bro_A | 141 | Transcriptional regulator; helix_TURN_helix, multi | 95.0 | |
| 3e6m_A | 161 | MARR family transcriptional regulator; APC88769, s | 94.99 | |
| 2frh_A | 127 | SARA, staphylococcal accessory regulator A; winged | 94.94 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 94.91 | |
| 1r7j_A | 95 | Conserved hypothetical protein SSO10A; winged heli | 94.91 | |
| 2pex_A | 153 | Transcriptional regulator OHRR; transcription regu | 94.89 | |
| 2fbi_A | 142 | Probable transcriptional regulator; MARR, APC5816, | 94.8 | |
| 3deu_A | 166 | Transcriptional regulator SLYA; MARR, WING-helix, | 94.79 | |
| 3cjn_A | 162 | Transcriptional regulator, MARR family; silicibact | 94.78 | |
| 3lwf_A | 159 | LIN1550 protein, putative transcriptional regulato | 94.78 | |
| 3boq_A | 160 | Transcriptional regulator, MARR family; MARR famil | 94.69 | |
| 3k69_A | 162 | Putative transcription regulator; putative transcr | 94.55 | |
| 2lkp_A | 119 | Transcriptional regulator, ARSR family; symmetric | 94.54 | |
| 1z91_A | 147 | Organic hydroperoxide resistance transcriptional; | 94.5 | |
| 1p6r_A | 82 | Penicillinase repressor; transcription regulation, | 94.49 | |
| 2pg4_A | 95 | Uncharacterized protein; structural genomics, join | 94.38 | |
| 2f2e_A | 146 | PA1607; transcription factor, helix-TRUN-helix, AP | 94.38 | |
| 3t8r_A | 143 | Staphylococcus aureus CYMR; transcriptional regula | 94.35 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.22 | |
| 3fm5_A | 150 | Transcriptional regulator; MCSG, PF04017, PSI, MAR | 94.22 | |
| 1ylf_A | 149 | RRF2 family protein; structural genomics, transcri | 94.21 | |
| 4b8x_A | 147 | SCO5413, possible MARR-transcriptional regulator; | 94.21 | |
| 3nqo_A | 189 | MARR-family transcriptional regulator; structural | 94.19 | |
| 1sfx_A | 109 | Conserved hypothetical protein AF2008; structural | 94.19 | |
| 2g7u_A | 257 | Transcriptional regulator; ICLR family, structural | 94.19 | |
| 2o0y_A | 260 | Transcriptional regulator; ICLR-family, structural | 94.09 | |
| 4aik_A | 151 | Transcriptional regulator SLYA; transcription, tra | 93.96 | |
| 2ia2_A | 265 | Putative transcriptional regulator; SAD, PSI-2, st | 93.94 | |
| 3u2r_A | 168 | Regulatory protein MARR; structural genomics, PSI- | 93.86 | |
| 2h09_A | 155 | Transcriptional regulator MNTR; transcription regu | 93.79 | |
| 2x4h_A | 139 | Hypothetical protein SSO2273; transcription; 2.30A | 93.62 | |
| 1bja_A | 95 | Transcription regulatory protein MOTA; activation | 93.58 | |
| 2fxa_A | 207 | Protease production regulatory protein HPR; protea | 93.47 | |
| 2k4b_A | 99 | Transcriptional regulator; DNA binding protein, wi | 93.35 | |
| 2qvo_A | 95 | Uncharacterized protein AF_1382; PSI, structural g | 93.12 | |
| 3r0a_A | 123 | Putative transcriptional regulator; structural gen | 92.93 | |
| 2fbk_A | 181 | Transcriptional regulator, MARR family; winged-hel | 92.85 | |
| 2lnb_A | 80 | Z-DNA-binding protein 1; structural genomics, nort | 92.75 | |
| 2w25_A | 150 | Probable transcriptional regulatory protein; trans | 92.75 | |
| 1xd7_A | 145 | YWNA; structural genomics, protein structure initi | 92.73 | |
| 2cfx_A | 144 | HTH-type transcriptional regulator LRPC; transcrip | 92.71 | |
| 2p4w_A | 202 | Transcriptional regulatory protein ARSR family; ar | 92.68 | |
| 3hrs_A | 214 | Metalloregulator SCAR; DTXR/MNTR family member, tr | 92.61 | |
| 2pn6_A | 150 | ST1022, 150AA long hypothetical transcriptional re | 92.31 | |
| 2p5v_A | 162 | Transcriptional regulator, LRP/ASNC family; NMB057 | 92.22 | |
| 2dk5_A | 91 | DNA-directed RNA polymerase III 39 kDa polypeptide | 92.01 | |
| 1ku9_A | 152 | Hypothetical protein MJ223; putative transcription | 91.75 | |
| 1hsj_A | 487 | Fusion protein consisting of staphylococcus access | 91.69 | |
| 2d1h_A | 109 | ST1889, 109AA long hypothetical transcriptional re | 91.5 | |
| 2ia0_A | 171 | Putative HTH-type transcriptional regulator PF086; | 91.4 | |
| 1okr_A | 123 | MECI, methicillin resistance regulatory protein ME | 91.3 | |
| 2dbb_A | 151 | Putative HTH-type transcriptional regulator PH006; | 91.26 | |
| 2cg4_A | 152 | Regulatory protein ASNC; DNA binding, FFRP, LRP fa | 91.22 | |
| 2cyy_A | 151 | Putative HTH-type transcriptional regulator PH151; | 91.19 | |
| 1sd4_A | 126 | Penicillinase repressor; BLAI, MECI, methicillin, | 91.09 | |
| 3i4p_A | 162 | Transcriptional regulator, ASNC family; PSI, struc | 91.04 | |
| 1p4x_A | 250 | Staphylococcal accessory regulator A homologue; wi | 90.78 | |
| 1q1h_A | 110 | TFE, transcription factor E, TFE; TFIIE, transcrip | 90.68 | |
| 2e1c_A | 171 | Putative HTH-type transcriptional regulator PH151; | 90.67 | |
| 1i1g_A | 141 | Transcriptional regulator LRPA; helix-turn-helix, | 90.64 | |
| 4fx0_A | 148 | Probable transcriptional repressor protein; helix- | 90.6 | |
| 2g9w_A | 138 | Conserved hypothetical protein; DNA-binding domain | 90.35 | |
| 1uly_A | 192 | Hypothetical protein PH1932; helix-turn-helix, str | 90.32 | |
| 2qlz_A | 232 | Transcription factor PF0095; 2.50A {Pyrococcus fur | 90.19 | |
| 2obp_A | 96 | Putative DNA-binding protein; structural genomics, | 90.07 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 90.04 | |
| 3cta_A | 230 | Riboflavin kinase; structural genomics, transferas | 89.79 | |
| 3k2z_A | 196 | LEXA repressor; winged helix-turn-helix, SOS syste | 89.42 | |
| 2esh_A | 118 | Conserved hypothetical protein TM0937; APC5794, st | 89.17 | |
| 2vn2_A | 128 | DNAD, chromosome replication initiation protein; D | 89.1 | |
| 3eyi_A | 72 | Z-DNA-binding protein 1; alternative splicing, DNA | 87.94 | |
| 4g6q_A | 182 | Putative uncharacterized protein; structural genom | 87.86 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 87.67 | |
| 3u1d_A | 151 | Uncharacterized protein; GNTR-superfamily, structu | 87.5 | |
| 3mag_A | 307 | VP39; methylated adenine, methyltransferase, RNA C | 87.29 | |
| 1p4x_A | 250 | Staphylococcal accessory regulator A homologue; wi | 87.26 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 87.21 | |
| 2o03_A | 131 | Probable zinc uptake regulation protein FURB; DNA- | 86.91 | |
| 1v4r_A | 102 | Transcriptional repressor; helix-turn-helix, winge | 86.91 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 86.48 | |
| 1bia_A | 321 | BIRA bifunctional protein; transcription regulatio | 85.81 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 85.3 | |
| 2fe3_A | 145 | Peroxide operon regulator; oxidative stress regula | 84.93 | |
| 2hoe_A | 380 | N-acetylglucosamine kinase; TM1224, structural gen | 84.82 | |
| 1sfu_A | 75 | 34L protein; protein/Z-DNA complex, DNA binding pr | 84.67 | |
| 2o0m_A | 345 | Transcriptional regulator, SORC family; structural | 84.63 | |
| 1fx7_A | 230 | Iron-dependent repressor IDER; DTXR, iron-dependen | 84.26 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 84.15 | |
| 2qlz_A | 232 | Transcription factor PF0095; 2.50A {Pyrococcus fur | 84.11 | |
| 2xvc_A | 59 | ESCRT-III, SSO0910; cell cycle, cell division, cyt | 83.66 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 83.41 | |
| 4esf_A | 117 | PADR-like transcriptional regulator; PADR family, | 83.33 | |
| 1j5y_A | 187 | Transcriptional regulator, biotin repressor famil; | 83.29 | |
| 2b0l_A | 102 | GTP-sensing transcriptional pleiotropic repressor; | 83.22 | |
| 1z6r_A | 406 | MLC protein; transcriptional repressor, ROK family | 82.58 | |
| 1jhg_A | 101 | Trp operon repressor; complex (regulatory protein- | 82.5 | |
| 3l7w_A | 108 | Putative uncharacterized protein SMU.1704; PADR, t | 81.87 | |
| 2p5k_A | 64 | Arginine repressor; DNA-binding domain, winged hel | 81.86 | |
| 1z05_A | 429 | Transcriptional regulator, ROK family; structural | 81.79 | |
| 2v79_A | 135 | DNA replication protein DNAD; primosome, DNA-bindi | 81.76 | |
| 2xig_A | 150 | Ferric uptake regulation protein; hpfur, transcrip | 81.54 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 81.51 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 81.47 | |
| 2yu3_A | 95 | DNA-directed RNA polymerase III 39 kDa polypeptide | 81.46 | |
| 3elk_A | 117 | Putative transcriptional regulator TA0346; structu | 81.3 | |
| 3i71_A | 68 | Ethanolamine utilization protein EUTK; helix-turn- | 81.28 | |
| 3rkx_A | 323 | Biotin-[acetyl-COA-carboxylase] ligase; biotin pro | 81.06 | |
| 2qq9_A | 226 | Diphtheria toxin repressor; regulator, DTXR, helix | 81.02 | |
| 3f8b_A | 116 | Transcriptional regulator, PADR-like family; winge | 80.32 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 80.15 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 80.03 |
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-54 Score=414.20 Aligned_cols=330 Identities=25% Similarity=0.407 Sum_probs=291.6
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCC
Q 016366 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (390)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~ 99 (390)
+.+++..|++++.||+.+++|++|++|||||.|.+. ||+|++|||+++|+ +++.+.|+||+|++.|++.+.....
T Consensus 5 e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~~~ 80 (353)
T 4a6d_A 5 EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVETRGG 80 (353)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEeccCc
Confidence 447889999999999999999999999999999875 58999999999999 9999999999999999997643234
Q ss_pred CcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCCc
Q 016366 100 ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGI 179 (390)
Q Consensus 100 ~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~ 179 (390)
.+.|++|+.+..++.+.++.++++++.+.. +..+..|. .|.+++++|++
T Consensus 81 ~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~------------------------------~L~~~vr~g~~ 129 (353)
T 4a6d_A 81 KAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWG------------------------------HLADAVREGRN 129 (353)
T ss_dssp EEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHT------------------------------THHHHHHHTSC
T ss_pred cceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHH------------------------------HHHHHHhcCCC
Confidence 568999999988777766677887776542 33445554 89999999999
Q ss_pred hhhhhcC---CChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEE
Q 016366 180 PFNRVHG---MHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVN 256 (390)
Q Consensus 180 ~~~~~~g---~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~ 256 (390)
++...+| .++|+++.++|+....|+++|...+....+.+++.++ +++..+|||||||+|.++..+++++|++++++
T Consensus 130 ~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~ 208 (353)
T 4a6d_A 130 QYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITV 208 (353)
T ss_dssp CHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEE
T ss_pred hhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEe
Confidence 9888877 4688999999999999999999999888888999888 88889999999999999999999999999999
Q ss_pred ecchHHHhhCCC------CCCceEEECCCCC-CCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 257 FDLPHVVQDAPS------YAGVEHVGGNMFE-SVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 257 ~Dl~~~~~~a~~------~~rv~~~~gd~~~-~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
+|+|.+++.+++ .+||+++.+|+++ +.|.+|+|++.++||+|+|+++.++|++++++|+|||+++|+|.+.++
T Consensus 209 ~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~ 288 (353)
T 4a6d_A 209 FDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDE 288 (353)
T ss_dssp EECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCT
T ss_pred ccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCC
Confidence 999999988765 2789999999998 566679999999999999999999999999999999999999999887
Q ss_pred CCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 330 IPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 330 ~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
++... .....+|+.|+..+ +|++||.+||+++|+++||+.+++.+.++..++|+++|
T Consensus 289 ~~~~~---~~~~~~dl~ml~~~-~g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 289 DRRGP---LLTQLYSLNMLVQT-EGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp TSCCC---HHHHHHHHHHHHSS-SCCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred CCCCC---HHHHHHHHHHHHhC-CCcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 54432 23457889998876 99999999999999999999999999999999999998
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-53 Score=409.09 Aligned_cols=341 Identities=47% Similarity=0.876 Sum_probs=301.6
Q ss_pred chHHhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhc--CCCCHHHHHHHhcc-CCCCCCC---cHHHHHHHHhcCc
Q 016366 17 EEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA--GELSAPEIAAQLQA-QNVKAPM---MLDRMLRLLVSHR 90 (390)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~--g~~t~~eLa~~~~~-~~~~~~~---~l~r~L~~L~~~g 90 (390)
...++.+++..+++++.+++.+++|++|+++||||.|.++ +|.|++|||+++|+ + +++ .|+||||+|++.|
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~---~~~~~~~l~rlLr~L~~~g 89 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAA---NPEAPDMVDRILRLLASYN 89 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTT---CTTHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCC---CccchhhHHHHHHHHHhCC
Confidence 4455778999999999999999999999999999999984 48999999999995 2 455 8999999999999
Q ss_pred ceeeccc--CC---CcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchh
Q 016366 91 VLECSVS--GG---ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNA 165 (390)
Q Consensus 91 ll~~~~~--~~---~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (390)
+|.+... .+ ++.|++|+.+..|..+.++.+++.++.+..++.++..|.
T Consensus 90 ~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 142 (364)
T 3p9c_A 90 VVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWY--------------------------- 142 (364)
T ss_dssp SEEEEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGG---------------------------
T ss_pred CEEEeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHh---------------------------
Confidence 9987310 01 478999999998887776668888887766676777776
Q ss_pred hccchhhhHhcCCchhhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHH
Q 016366 166 CRLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMI 245 (390)
Q Consensus 166 ~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l 245 (390)
+|.+++++|.++++..+|.++|+|+..+|+..+.|+++|...+....+.+++.++++++..+|||||||+|.++..+
T Consensus 143 ---~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l 219 (364)
T 3p9c_A 143 ---YLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAI 219 (364)
T ss_dssp ---GHHHHHHHCSCHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHH
T ss_pred ---CHHHHHhhCCChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHH
Confidence 89999999999999999999999999999999999999999888888888888876778899999999999999999
Q ss_pred HhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 246 TSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 246 ~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
++++|+++++++|+|.+++.+++.++|+++.+|+++++|.+|+|++.+++|+|+++++.++|++++++|+|||+++|.|.
T Consensus 220 ~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 220 AAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp HHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred HHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99999999999999999999999899999999999888877999999999999999999999999999999999999999
Q ss_pred ccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 326 IVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
+.++.+...........+|+.|+....+|+.||.++|+++|+++||+.+++.++.+..++||++|
T Consensus 300 ~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 300 ILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp CBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred ccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 98775443333334467888888544589999999999999999999999999999999999997
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-53 Score=410.67 Aligned_cols=357 Identities=51% Similarity=0.905 Sum_probs=299.1
Q ss_pred CCchhHHHHhhccCCcchHHhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhc-C---CCCHHHHHHHhccCCCCCC
Q 016366 1 MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-G---ELSAPEIAAQLQAQNVKAP 76 (390)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~-g---~~t~~eLa~~~~~~~~~~~ 76 (390)
|||+.|-|...+ + ...++.+++.++++++.+++.+++|++|+++||||.|.+. | |.|++|||++++..++.++
T Consensus 1 ~~~~~~~~~~~~-~--~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~ 77 (368)
T 3reo_A 1 MGSTGNAEIQII-P--THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAP 77 (368)
T ss_dssp -------------------CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHH
T ss_pred CCCccccccccc-C--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcch
Confidence 888888765322 2 3446778999999999999999999999999999999984 3 6999999999983111122
Q ss_pred CcHHHHHHHHhcCcceeeccc--CC---CcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCc
Q 016366 77 MMLDRMLRLLVSHRVLECSVS--GG---ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSG 151 (390)
Q Consensus 77 ~~l~r~L~~L~~~gll~~~~~--~~---~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (390)
..|+||||+|++.|+|.+... .. +++|++|+.+..|..+.++.+++.++.+..++.++..|.
T Consensus 78 ~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 144 (368)
T 3reo_A 78 VMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWF------------- 144 (368)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGG-------------
T ss_pred hhHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhh-------------
Confidence 499999999999999987310 01 368999999998887776678888887776676777776
Q ss_pred chhhhhhccccchhhccchhhhHhcCCchhhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceE
Q 016366 152 QIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERL 231 (390)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~i 231 (390)
+|.+++++|.++|+..+|.++|+|+..+|+..+.|+++|...+....+.+++.++++++..+|
T Consensus 145 -----------------~l~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~v 207 (368)
T 3reo_A 145 -----------------YLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTI 207 (368)
T ss_dssp -----------------GHHHHHHHCSCHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEE
T ss_pred -----------------chHHHHhcCCCHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEE
Confidence 899999999999999999999999999999999999999998888888888888657778999
Q ss_pred EEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHH
Q 016366 232 VDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCY 311 (390)
Q Consensus 232 LDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~ 311 (390)
||||||+|.++..+++++|+++++++|+|.+++.+++.++|+++.+|+++++|.+|+|++.+++|+|+++++.++|++++
T Consensus 208 lDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~ 287 (368)
T 3reo_A 208 VDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCY 287 (368)
T ss_dssp EEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHH
T ss_pred EEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988999999999998888779999999999999999999999999
Q ss_pred HhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 312 KAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 312 ~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
++|+|||+++|.|.+.++.+...........+|+.|+....+++.||.++|+++|+++||+++++.+..+..+++|++|
T Consensus 288 ~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 288 AALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp HHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 9999999999999998775544333445567888888654589999999999999999999999999999999999987
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-48 Score=372.40 Aligned_cols=324 Identities=25% Similarity=0.354 Sum_probs=286.2
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC
Q 016366 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (390)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~ 100 (390)
..++..++++++.+++.+++|++++++||||.|.+ ||.|++|||+++|+ +++.++||||+|++.|+|.+ ++
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~-g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~----~~ 89 (348)
T 3lst_A 19 RLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD-GPRTPAELAAATGT----DADALRRVLRLLAVRDVVRE----SD 89 (348)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT-SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ET
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEe----cC
Confidence 34788889999999999999999999999999987 69999999999999 99999999999999999995 46
Q ss_pred cceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCCch
Q 016366 101 RLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIP 180 (390)
Q Consensus 101 ~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~ 180 (390)
+.|++|+.+..|..+.+ .++++++.+..++.++..|. +|.+.+++|.++
T Consensus 90 ~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~------------------------------~l~~~l~~g~~~ 138 (348)
T 3lst_A 90 GRFALTDKGAALRSDSP-VPARAGILMFTDTMFWTMSH------------------------------RVASALGPERPA 138 (348)
T ss_dssp TEEEECTTTGGGSTTSS-SCSHHHHHHHTSHHHHHHHH------------------------------THHHHTCTTCCC
T ss_pred CEEecCHHHHHHhcCCC-ccHHHHHHHhcCHHHHHHHH------------------------------HHHHHHhcCCCh
Confidence 89999999998865543 46788777666665667776 899999999999
Q ss_pred hhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecch
Q 016366 181 FNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP 260 (390)
Q Consensus 181 ~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~ 260 (390)
++..+|.++|+|+.++|+..+.|++.|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|++
T Consensus 139 ~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 217 (348)
T 3lst_A 139 FADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA 217 (348)
T ss_dssp HHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH
T ss_pred hhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH
Confidence 9999998999999999999999999999988877788888888 888899999999999999999999999999999998
Q ss_pred HHHhhCCC-----CCCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcch
Q 016366 261 HVVQDAPS-----YAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSS 335 (390)
Q Consensus 261 ~~~~~a~~-----~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~ 335 (390)
.++...+. .+||+++.+|+++++|..|+|++.+++|+|+++++.++|++++++|||||+++|.|.+.++...+
T Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~-- 295 (348)
T 3lst_A 218 EVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDA-- 295 (348)
T ss_dssp HHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSC--
T ss_pred HHhhcccccccCCCCCeEEEecCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc--
Confidence 88773321 25799999999987774499999999999999999999999999999999999999988765332
Q ss_pred HHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 336 AARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 336 ~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
.....+++.|+... +++.++.++|+++|+++||+++++.+..+..++++++|
T Consensus 296 --~~~~~~d~~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 296 --HQSKEMDFMMLAAR-TGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp --CHHHHHHHHHHHTT-SCCCCBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred --chhhhcChhhhhcC-CCcCCCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 22346777777654 89999999999999999999999999888899999985
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-48 Score=376.10 Aligned_cols=327 Identities=24% Similarity=0.442 Sum_probs=290.7
Q ss_pred hHHhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeeccc
Q 016366 18 EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 97 (390)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~ 97 (390)
+........++++++.+++.+++|++++++||||.|.+ ||.|++|||+++|+ +++.++||||+|++.|++.+
T Consensus 32 ~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~-g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~--- 103 (369)
T 3gwz_A 32 TAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE-GPRTATALAEATGA----HEQTLRRLLRLLATVGVFDD--- 103 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEE---
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEE---
Confidence 34445778899999999999999999999999999996 69999999999999 99999999999999999997
Q ss_pred CCCcc-eecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhc
Q 016366 98 GGERL-YALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVME 176 (390)
Q Consensus 98 ~~~~~-y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 176 (390)
..++. |++|+.++.|..+.+ .++++++.+..++..+..|. +|.+++++
T Consensus 104 ~~~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~------------------------------~l~~~l~~ 152 (369)
T 3gwz_A 104 LGHDDLFAQNALSAVLLPDPA-SPVATDARFQAAPWHWRAWE------------------------------QLTHSVRT 152 (369)
T ss_dssp CSSTTEEECCHHHHTTSCCTT-CHHHHHHHHHHSHHHHHHHH------------------------------THHHHHHH
T ss_pred eCCCceEecCHHHHHHhcCCc-hhHHHHHHHcCCHHHHHHHH------------------------------hHHHHHhC
Confidence 35678 999999998865443 46888887766655566776 89999999
Q ss_pred CCchhhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEE
Q 016366 177 GGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVN 256 (390)
Q Consensus 177 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~ 256 (390)
|.++|...+|.++|+|+.++|+..+.|+++|...+....+.+++.++ +++..+|||||||+|.++..+++++|++++++
T Consensus 153 g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~ 231 (369)
T 3gwz_A 153 GEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTL 231 (369)
T ss_dssp SSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEE
T ss_pred CCChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEE
Confidence 99999999998999999999999999999999998888888988887 88889999999999999999999999999999
Q ss_pred ecchHHHhhCCC-------CCCceEEECCCCCCCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 257 FDLPHVVQDAPS-------YAGVEHVGGNMFESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 257 ~Dl~~~~~~a~~-------~~rv~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
+|+|.+++.+++ .++|+++.+|+++++|.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|.+.+
T Consensus 232 ~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 311 (369)
T 3gwz_A 232 LERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLID 311 (369)
T ss_dssp EECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCC
T ss_pred EcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 999989988875 368999999999877754 999999999999999999999999999999999999999987
Q ss_pred CCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEe-cCCceeEEEEeC
Q 016366 329 EIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS-CVCNLYIMEFFK 390 (390)
Q Consensus 329 ~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~k 390 (390)
+.... . ...+++.|+... +++.+|.++|+++|+++||+++++.+ ..+..++|+++|
T Consensus 312 ~~~~~----~-~~~~d~~~~~~~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 312 ERPAA----S-TLFVDLLLLVLV-GGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp SSCCH----H-HHHHHHHHHHHH-SCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred CCCCC----c-hhHhhHHHHhhc-CCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 75322 1 457788887765 89999999999999999999999999 678899999986
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=371.27 Aligned_cols=341 Identities=42% Similarity=0.738 Sum_probs=275.6
Q ss_pred HHhhHHHHHHH--HHHhhhhHHHHHHHHHHhChhHHHhhcC-C---CCHHHHHHHhcc--CCCCCCCcHHHHHHHHhcCc
Q 016366 19 EEEEESYSHAM--QLAMGVVLPMATQAAIQLGVFEIIAKAG-E---LSAPEIAAQLQA--QNVKAPMMLDRMLRLLVSHR 90 (390)
Q Consensus 19 ~~~~~~~~~l~--~~~~~~~~~~~l~~a~~lglfd~L~~~g-~---~t~~eLa~~~~~--~~~~~~~~l~r~L~~L~~~g 90 (390)
++..++...++ +++.+++.+++|++|+++|||+.|.+.| | .|++|||+++|+ +++.+++.++||||+|++.|
T Consensus 17 ~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~g 96 (372)
T 1fp1_D 17 SEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYS 96 (372)
T ss_dssp --CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCC
Confidence 34557777888 9999999999999999999999999755 6 999999999998 13336789999999999999
Q ss_pred ceeecc---cCC--CcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchh
Q 016366 91 VLECSV---SGG--ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNA 165 (390)
Q Consensus 91 ll~~~~---~~~--~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (390)
+|.+.. ..+ ++.|++|+.+..|..+.+..++++++.+..++.++..|.
T Consensus 97 ll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 149 (372)
T 1fp1_D 97 VLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWM--------------------------- 149 (372)
T ss_dssp SEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHT---------------------------
T ss_pred ceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHH---------------------------
Confidence 998731 001 368999999987776544246788877766666666675
Q ss_pred hccchhhhHhcC-CchhhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHH
Q 016366 166 CRLGLKDAVMEG-GIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSM 244 (390)
Q Consensus 166 ~~~~l~~~l~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~ 244 (390)
+|.+.+++| .++++..+|.++|+++..+|+..+.|++.|...+....+.+++.++.+++..+|||||||+|.++..
T Consensus 150 ---~L~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~ 226 (372)
T 1fp1_D 150 ---NFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLEL 226 (372)
T ss_dssp ---THHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHH
T ss_pred ---HHHHHHHcCCCChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHH
Confidence 999999998 7889888898999999999999999999999888877788888886567788999999999999999
Q ss_pred HHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 245 ITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 245 l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+++++|+++++++|++.+++.+++.++|+++.+|+++++|..|+|++.+++|+|+++++.++|++++++|+|||+++|.|
T Consensus 227 l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 227 IISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp HHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999999999999999999999888999999999987776799999999999999999999999999999999999999
Q ss_pred cccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCc-eeEEEEeC
Q 016366 325 SIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCN-LYIMEFFK 390 (390)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~k 390 (390)
...++.............+++.|+... +++.|+.++|+++|+++||+++++.+...+ .+|||++|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 307 FILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp EEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred eccCCCCccchHHHHHHHhhHHHHhcc-CCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 987765432211123456777776543 788999999999999999999999885433 69999987
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-48 Score=369.82 Aligned_cols=316 Identities=24% Similarity=0.378 Sum_probs=277.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceec
Q 016366 26 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (390)
Q Consensus 26 ~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~ 105 (390)
.++++++.|++.+++|++|+++||||.|.+ ||.|++|||+++|+ +++.++||||+|++.|++.+ .+++.|.+
T Consensus 7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~-g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~---~~~~~y~~ 78 (332)
T 3i53_A 7 HIGLRALADLATPMAVRVAATLRVADHIAA-GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTR---DGQGVYGL 78 (332)
T ss_dssp SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---CTTSBEEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHcChHHHHhc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEe---cCCCeEEc
Confidence 457899999999999999999999999987 79999999999999 99999999999999999997 45789999
Q ss_pred CccccccccCCCCCChHHHHhcccChhhh-hhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCCchhhhh
Q 016366 106 NPVSKYFVSNKDGASLGHFMALPLDKVFM-ESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRV 184 (390)
Q Consensus 106 t~~s~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~ 184 (390)
|+.+..+..+.+ .++++++.+..++..+ ..|. .|.+++++|.++|...
T Consensus 79 t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------------------~l~~~l~~~~~~~~~~ 127 (332)
T 3i53_A 79 TEFGEQLRDDHA-AGKRKWLDMNSAVGRGDLGFV------------------------------ELAHSIRTGQPAYPVR 127 (332)
T ss_dssp CTTGGGGSTTCT-TCCHHHHCTTSHHHHHGGGGG------------------------------GHHHHHHHSSCSHHHH
T ss_pred CHhHHHHhcCCc-hhHHHHHHHcCCHhHHHHHHH------------------------------HhHHHHhcCCCHHHHh
Confidence 999999865544 5678887665544333 4554 8999999999999988
Q ss_pred cCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHh
Q 016366 185 HGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQ 264 (390)
Q Consensus 185 ~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~ 264 (390)
+|.++|+++.++|+..+.|.+.|...+....+.+++.++ +++..+|||||||+|.++..+++++|+.+++++|+|.+++
T Consensus 128 ~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 206 (332)
T 3i53_A 128 YGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPAS 206 (332)
T ss_dssp HSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHH
T ss_pred hCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHH
Confidence 998899999999999999999999888777777777777 7778999999999999999999999999999999999998
Q ss_pred hCCC-------CCCceEEECCCCCCCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchH
Q 016366 265 DAPS-------YAGVEHVGGNMFESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSA 336 (390)
Q Consensus 265 ~a~~-------~~rv~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~ 336 (390)
.+++ .++|+++.+|+++++|.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|.+.++. .+
T Consensus 207 ~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~--- 282 (332)
T 3i53_A 207 AAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HA--- 282 (332)
T ss_dssp HHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----C---
T ss_pred HHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-Cc---
Confidence 8875 268999999999877754 99999999999999989999999999999999999999987764 11
Q ss_pred HhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 337 ARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 337 ~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
...+++.|+... +++.||.++|+++|+++||+++++.+.++ .+++|++|
T Consensus 283 ---~~~~d~~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 283 ---GTGMDLRMLTYF-GGKERSLAELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp ---CHHHHHHHHHHH-SCCCCCHHHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred ---cHHHHHHHHhhC-CCCCCCHHHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 246777777664 89999999999999999999999999988 99999975
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-47 Score=368.70 Aligned_cols=337 Identities=28% Similarity=0.485 Sum_probs=288.1
Q ss_pred HhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeeccc-
Q 016366 20 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS- 97 (390)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~- 97 (390)
+..++..++++++.+++.+++|++++++|||+.|.+. ||.|++|||+++|+ ++.+++.++||||+|++.|+|.+...
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~~~ 84 (358)
T 1zg3_A 6 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTIVK 84 (358)
T ss_dssp CCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEeccc
Confidence 3456667899999999999999999999999999875 49999999999999 33357899999999999999987300
Q ss_pred -CC-----CcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchh
Q 016366 98 -GG-----ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLK 171 (390)
Q Consensus 98 -~~-----~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (390)
.. ++.|++|+.+..|..+.+ .++++++.+..++.++..|. .|.
T Consensus 85 ~~~~~g~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~------------------------------~L~ 133 (358)
T 1zg3_A 85 GKEGDEEEEIAYSLTPPSKLLISGKP-TCLSSIVKGALHPSSLDMWS------------------------------SSK 133 (358)
T ss_dssp CSSSSCCCEEEEEECHHHHTTCTTST-TCCHHHHHHHTSHHHHGGGG------------------------------GHH
T ss_pred ccccCCCCCCEEeCCHHHHHHhCCCC-ccHHHHHHHhcCcHHHHHHH------------------------------HHH
Confidence 01 478999999987776554 57888887766665666665 899
Q ss_pred hhHhcC--CchhhhhcCCChhhhcccCchHHH--HHHHHHhhccHHHHHHHHHHhh-ccCCcceEEEEcCCccHHHHHHH
Q 016366 172 DAVMEG--GIPFNRVHGMHIFEYASGNPRFNE--TYHEAMFNHSTIAMERILEHYE-GFQNVERLVDVGGGFGVTLSMIT 246 (390)
Q Consensus 172 ~~l~~g--~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~m~~~~~~~~~~l~~~~~-~~~~~~~iLDiG~G~G~~~~~l~ 246 (390)
+.+++| .++|+..+|.++|+++..+|+..+ .|++.|...+.... .+++.++ .+++..+|||||||+|.++..++
T Consensus 134 ~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~ 212 (358)
T 1zg3_A 134 KWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIH 212 (358)
T ss_dssp HHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHH
T ss_pred HHHhCCCCCChHHHHhCCCHHHHHhcChhhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHH
Confidence 999998 678888889999999999999999 99999998887666 7777773 26677899999999999999999
Q ss_pred hhCCCCeEEEecchHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCC---CcEEEEE
Q 016366 247 SKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPG---NGKVIVM 323 (390)
Q Consensus 247 ~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~lli~ 323 (390)
+++|+++++++|++.+++.+++.++|+++.+|+++++|..|+|++.++||+|+++++.++|++++++|+| ||+++|.
T Consensus 213 ~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~ 292 (358)
T 1zg3_A 213 EIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIII 292 (358)
T ss_dssp HHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred HHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 9999999999999999999998888999999999877767999999999999999999999999999999 9999999
Q ss_pred ecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 324 NSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 324 e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
|.+.++.............+++.|+... +++.|+.++|+++|+++||+++++.+.++..++||++|
T Consensus 293 e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 293 DISIDETSDDRGLTELQLDYDLVMLTMF-LGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp ECEECTTCSCHHHHHHHHHHHHHHHHHH-SCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred EeccCCCCccchhhhHHHhhCHHHhccC-CCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 9988765432111234566788777654 88999999999999999999999999888889999986
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=363.09 Aligned_cols=336 Identities=28% Similarity=0.491 Sum_probs=288.1
Q ss_pred HHhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeeccc
Q 016366 19 EEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 97 (390)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~ 97 (390)
++..++..++++++.+++.+++|++++++|||+.|... ||.|++|||+++|+ ++.+++.++||||+|++.|+|.+..
T Consensus 11 ~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~~- 88 (352)
T 1fp2_A 11 SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIIT- 88 (352)
T ss_dssp THHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEE-
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEec-
Confidence 45667888999999999999999999999999999875 49999999999999 2324778999999999999998730
Q ss_pred CCCcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHh-c
Q 016366 98 GGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVM-E 176 (390)
Q Consensus 98 ~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~ 176 (390)
.+++.|++|+.+..|..+.+ .++++++.+..++.++..|. .|.+.++ +
T Consensus 89 ~~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~------------------------------~L~~~l~~~ 137 (352)
T 1fp2_A 89 KEEESYALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYH------------------------------ELKKWIYEE 137 (352)
T ss_dssp SSSEEEEECHHHHTTSTTSS-SCCHHHHHHHTCHHHHHGGG------------------------------GHHHHHTCS
T ss_pred CCCCeEeCCHHHHHHhCCCC-ccHHHHHHHhcCchHHHHHH------------------------------HHHHHHHhc
Confidence 02589999999997776554 56888877666655566665 8999999 8
Q ss_pred CCchhhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhh-ccCCcceEEEEcCCccHHHHHHHhhCCCCeEE
Q 016366 177 GGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYE-GFQNVERLVDVGGGFGVTLSMITSKYPQIKAV 255 (390)
Q Consensus 177 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~-~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~ 255 (390)
|.++++..+|.++|+++.++|+..+.|++.|...+....+. ++.++ .+++..+|||||||+|.++..+++++|+.+++
T Consensus 138 g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~ 216 (352)
T 1fp2_A 138 DLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCI 216 (352)
T ss_dssp SCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEE
T ss_pred CCChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEE
Confidence 88899988899999999999999999999999988877666 77772 26778899999999999999999999999999
Q ss_pred EecchHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCC---CcEEEEEecccCCCCC
Q 016366 256 NFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPG---NGKVIVMNSIVPEIPE 332 (390)
Q Consensus 256 ~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~lli~e~~~~~~~~ 332 (390)
++|++.+++.+++.++|+++.+|+++++|..|+|++.+++|+|+++++.++|++++++|+| ||+++|.|...++...
T Consensus 217 ~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~ 296 (352)
T 1fp2_A 217 VFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKD 296 (352)
T ss_dssp EEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTS
T ss_pred EeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCC
Confidence 9999999999998888999999998877767999999999999999999999999999999 9999999998776432
Q ss_pred cchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 333 VSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 333 ~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
..........+++.|+. . +++.++.++|+++|+++||+++++.+.++..+|||++|
T Consensus 297 ~~~~~~~~~~~d~~~~~-~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 297 ENQVTQIKLLMDVNMAC-L-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp CHHHHHHHHHHHHHGGG-G-TCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred ccchhhhHhhccHHHHh-c-cCCCCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 21112334567777776 4 58899999999999999999999999888889999986
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=359.79 Aligned_cols=319 Identities=24% Similarity=0.377 Sum_probs=279.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc
Q 016366 23 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL 102 (390)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~ 102 (390)
...+.+++++.+++.+++|++++++|||+.|.+ ||.|++|||+++|+ +++.++||||+|++.|++.+ .+++.
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~-~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~---~~~~~ 78 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES-GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQG---DTRDG 78 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---ETTTE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEe---cCCCe
Confidence 466789999999999999999999999999986 69999999999999 99999999999999999987 34579
Q ss_pred eecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCCchhh
Q 016366 103 YALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFN 182 (390)
Q Consensus 103 y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~ 182 (390)
|++|+.+..+. +. +.++++++.+..++.. ..|. .|.+.+++|.++|+
T Consensus 79 y~~t~~s~~l~-~~-~~~~~~~~~~~~~~~~-~~~~------------------------------~l~~~l~~~~~~~~ 125 (334)
T 2ip2_A 79 YANTPTSHLLR-DV-EGSFRDMVLFYGEEFH-AAWT------------------------------PACEALLSGTPGFE 125 (334)
T ss_dssp EEECHHHHTTS-SS-TTCSHHHHHHHTTHHH-HHTT------------------------------THHHHHHHCCCHHH
T ss_pred EecCHHHHHHh-CC-CccHHHHHHHhcCchh-hHHH------------------------------HHHHHHhcCCChhh
Confidence 99999998877 43 3467887766554433 4554 89999999999998
Q ss_pred hhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHH
Q 016366 183 RVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHV 262 (390)
Q Consensus 183 ~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~ 262 (390)
..+|.++|+++.++|+..+.|++.| ..+....+.+++.++ +++ .+|||||||+|.++..+++++|+.+++++|++.+
T Consensus 126 ~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~ 202 (334)
T 2ip2_A 126 LAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGS 202 (334)
T ss_dssp HHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTC
T ss_pred hhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHH
Confidence 8889899999999999999999999 888877788888887 777 9999999999999999999999999999999888
Q ss_pred HhhCCCC-------CCceEEECCCCCCCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcc
Q 016366 263 VQDAPSY-------AGVEHVGGNMFESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVS 334 (390)
Q Consensus 263 ~~~a~~~-------~rv~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~ 334 (390)
++.+++. ++|+++.+|+++++|.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|...++...+
T Consensus 203 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~- 281 (334)
T 2ip2_A 203 LGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPS- 281 (334)
T ss_dssp THHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCC-
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc-
Confidence 8887652 68999999999877765 99999999999999999999999999999999999999987664322
Q ss_pred hHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 335 SAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 335 ~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
.....+++.|+... +++.++.++|+++++++||+++++.+.++..++|+++|
T Consensus 282 ---~~~~~~~~~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 282 ---PMSVLWDVHLFMAC-AGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp ---HHHHHHHHHHHHHH-SCCCCBHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred ---chhHHhhhHhHhhC-CCcCCCHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 23456777777655 78999999999999999999999999988899999986
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=348.37 Aligned_cols=327 Identities=18% Similarity=0.259 Sum_probs=262.4
Q ss_pred chHHhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhh-cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 17 EEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~-~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.+++..++..++++++.|++.+++|++++++||||.|.+ .||.|++|||+++|+ +++.++||||+|++.|+|++
T Consensus 8 ~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~- 82 (363)
T 3dp7_A 8 EQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILL- 82 (363)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEE-
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEe-
Confidence 344556788899999999999999999999999999997 469999999999999 99999999999999999985
Q ss_pred ccCCCcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHh
Q 016366 96 VSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVM 175 (390)
Q Consensus 96 ~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 175 (390)
++++|++|+.+..|..+++ ....+.+ ..+..+..|. .|.++++
T Consensus 83 ---~~~~y~~t~~s~~L~~~~~---~~~~~~~-~~~~~~~~~~------------------------------~L~~~lr 125 (363)
T 3dp7_A 83 ---EEDRYVLAKAGWFLLNDKM---ARVNMEF-NHDVNYQGLF------------------------------HLEEALL 125 (363)
T ss_dssp ---ETTEEEECHHHHHHHHCHH---HHHHHHH-HHHTTHHHHT------------------------------THHHHHH
T ss_pred ---cCCEEecccchHHhhCCCc---ccchhee-ecHHhhhhHH------------------------------HHHHHHh
Confidence 4789999999987776543 1122211 2233445554 9999999
Q ss_pred cCCchhhhhcC--CChhhhcccCchHHH----HHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC
Q 016366 176 EGGIPFNRVHG--MHIFEYASGNPRFNE----TYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY 249 (390)
Q Consensus 176 ~g~~~~~~~~g--~~~~~~~~~~~~~~~----~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~ 249 (390)
+|.+++...+| .++|+++.++|+..+ .|++.|..... ..++..+. ..+..+|||||||+|.++..+++++
T Consensus 126 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~ 201 (363)
T 3dp7_A 126 NGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYN 201 (363)
T ss_dssp HSSCGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHS
T ss_pred cCCCccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhC
Confidence 99988887888 689999999998766 36777765543 23444443 3567899999999999999999999
Q ss_pred CCCeEEEecchHHHhhCCCC-------CCceEEECCCCCC---CCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCc
Q 016366 250 PQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFES---VPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNG 318 (390)
Q Consensus 250 p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~~---~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG 318 (390)
|+++++++|+|.+++.++++ +||+++.+|++++ +|.. |+|++.+++|+|+++++.++|++++++|+|||
T Consensus 202 p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG 281 (363)
T 3dp7_A 202 KEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDS 281 (363)
T ss_dssp TTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999888752 5799999999983 6754 99999999999999999999999999999999
Q ss_pred EEEEEecccCCCCCcch-HHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecC-CceeEEEEeC
Q 016366 319 KVIVMNSIVPEIPEVSS-AARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV-CNLYIMEFFK 390 (390)
Q Consensus 319 ~lli~e~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 390 (390)
+++|.|.+.++...... ........++.|+.. .+++.|+.++|+++|+++||+++++.+.. ...++++++|
T Consensus 282 ~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 282 KVYIMETLWDRQRYETASYCLTQISLYFTAMAN-GNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp EEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSC-SSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred EEEEEeeccCCccccchhhHHHHhhhhHHhhhC-CCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 99999998876532211 001112233333332 36789999999999999999999998765 5588999875
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-44 Score=346.16 Aligned_cols=325 Identities=23% Similarity=0.381 Sum_probs=276.6
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC
Q 016366 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (390)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~ 100 (390)
..+....+++++.+++.+++|++++++|||+.|.. ||.|++|||+++|+ +++.++||||+|++.|++.+ ..+
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~---~~~ 84 (374)
T 1qzz_A 13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA-GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEG---GEK 84 (374)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---CCC
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEE---eCC
Confidence 34567789999999999999999999999999975 79999999999999 99999999999999999986 345
Q ss_pred c--ceecCccccccccCCCCCChHHHHhcccChhhh-hhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcC
Q 016366 101 R--LYALNPVSKYFVSNKDGASLGHFMALPLDKVFM-ESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEG 177 (390)
Q Consensus 101 ~--~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g 177 (390)
+ .|++|+.+..+..+.+ .++++++.+..++..+ ..|. .|.+.+++|
T Consensus 85 ~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------------------~l~~~l~~~ 133 (374)
T 1qzz_A 85 QGRPLRPTRLGMLLADGHP-AQQRAWLDLNGAVSHADLAFT------------------------------GLLDVVRTG 133 (374)
T ss_dssp -CCCCEECTTGGGGSTTCT-TCHHHHHCTTSHHHHHHGGGG------------------------------GHHHHHHHS
T ss_pred CCeEEEEChHHHhhcCCCc-ccHHHHHHHcCChhhHHHHHH------------------------------HHHHHHhcC
Confidence 6 8999999987776543 5788887766544344 4554 899999999
Q ss_pred CchhhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEe
Q 016366 178 GIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNF 257 (390)
Q Consensus 178 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~ 257 (390)
.+++...+|.++|++...+|+....|++.|........+.+++.++ +.+..+|||||||+|.++..+++++|+++++++
T Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~ 212 (374)
T 1qzz_A 134 RPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLV 212 (374)
T ss_dssp CCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEE
T ss_pred CChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEE
Confidence 9888888899999999999999999999999887777778888877 778899999999999999999999999999999
Q ss_pred cchHHHhhCCCC-------CCceEEECCCCCCCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec--cc
Q 016366 258 DLPHVVQDAPSY-------AGVEHVGGNMFESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS--IV 327 (390)
Q Consensus 258 Dl~~~~~~a~~~-------~rv~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~--~~ 327 (390)
|++.+++.+++. ++|+++.+|+++++|.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|. ..
T Consensus 213 D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (374)
T 1qzz_A 213 ELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVE 292 (374)
T ss_dssp ECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH--
T ss_pred eCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhc
Confidence 998888887752 48999999998877775 999999999999999888999999999999999999998 76
Q ss_pred CCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCce-----eEEEEeC
Q 016366 328 PEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNL-----YIMEFFK 390 (390)
Q Consensus 328 ~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-----~vi~~~k 390 (390)
++... ......+++.|+... +++.++.++|.++|+++||+++++...++.. ++++++|
T Consensus 293 ~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 293 GDGAD----RFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp ---------HHHHHHHHHHHHHHH-SCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred CCCCC----cchhhhcchHHHHhC-CCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 54321 123446677776654 7899999999999999999999999988777 8999875
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=341.69 Aligned_cols=323 Identities=23% Similarity=0.382 Sum_probs=278.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc
Q 016366 23 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL 102 (390)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~ 102 (390)
...+++++++.+++.+++|.+++++|||+.|.. |+.|++|||+++|+ ++..++|+|++|++.|+|.+ ..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~---~~~g~ 89 (360)
T 1tw3_A 18 IDALRTLIRLGSLHTPMVVRTAATLRLVDHILA-GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEE---DAPGE 89 (360)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---EETTE
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEe---cCCCe
Confidence 557889999999999999999999999999976 69999999999999 99999999999999999986 35678
Q ss_pred eecCccccccccCCCCCChHHHHhcccChh-hhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCCchh
Q 016366 103 YALNPVSKYFVSNKDGASLGHFMALPLDKV-FMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPF 181 (390)
Q Consensus 103 y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~ 181 (390)
|++|+.+..+..+.+ .++++++.+...+. .+..|. .|.+.+++|.+++
T Consensus 90 y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------------------~l~~~l~~g~~~~ 138 (360)
T 1tw3_A 90 FVPTEVGELLADDHP-AAQRAWHDLTQAVARADISFT------------------------------RLPDAIRTGRPTY 138 (360)
T ss_dssp EEECTTGGGGSTTST-TCHHHHTCTTSHHHHHGGGGG------------------------------GHHHHHHHCCCCH
T ss_pred EEeCHHHHHHhcCCc-hhHHHHHHHhcCchhHHHHHH------------------------------HHHHHHHcCCCHH
Confidence 999999887776543 57888776654432 344454 8889999998888
Q ss_pred hhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchH
Q 016366 182 NRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPH 261 (390)
Q Consensus 182 ~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~ 261 (390)
...+|.++|+++..+|+....|...|........+.+++.++ +.+..+|||||||+|.++..+++++|+++++++|++.
T Consensus 139 ~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~ 217 (360)
T 1tw3_A 139 ESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAG 217 (360)
T ss_dssp HHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTT
T ss_pred HHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHH
Confidence 888898999999999999999999999888777778888887 7788999999999999999999999999999999988
Q ss_pred HHhhCCCC-------CCceEEECCCCCCCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc-cCCCCC
Q 016366 262 VVQDAPSY-------AGVEHVGGNMFESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI-VPEIPE 332 (390)
Q Consensus 262 ~~~~a~~~-------~rv~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~-~~~~~~ 332 (390)
+++.+++. ++|+++.+|+++++|.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|.. .++...
T Consensus 218 ~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~ 297 (360)
T 1tw3_A 218 TVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSF 297 (360)
T ss_dssp HHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCC
T ss_pred HHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCC
Confidence 88877752 48999999999877775 9999999999999998899999999999999999999988 654322
Q ss_pred cchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCc-----eeEEEEeC
Q 016366 333 VSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCN-----LYIMEFFK 390 (390)
Q Consensus 333 ~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~-----~~vi~~~k 390 (390)
. .....+++.|+... +++.++.++|+++|+++||+++++.+.++. .++++++|
T Consensus 298 ~----~~~~~~~~~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 298 N----EQFTELDLRMLVFL-GGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp S----HHHHHHHHHHHHHH-SCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred c----chhhhccHHHhhhc-CCcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 1 22345677776654 788999999999999999999999988766 78999875
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=331.70 Aligned_cols=314 Identities=18% Similarity=0.230 Sum_probs=269.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceec
Q 016366 26 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (390)
Q Consensus 26 ~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~ 105 (390)
+.+++++.+++.+++|++++++|||+.|.+ ||.|++|||+++|+ +++.++||||+|++.|+|++ +++.|++
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~----~~~~y~~ 78 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ-GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTK----QAEGYRL 78 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT-SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc-CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEe----cCCEEec
Confidence 679999999999999999999999999997 69999999999999 99999999999999999985 5689999
Q ss_pred Ccccc-ccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCCchhhhh
Q 016366 106 NPVSK-YFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRV 184 (390)
Q Consensus 106 t~~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~ 184 (390)
|+.+. .+..+. +.++++++.+..++..+..|. .|.+.+++|.+++.
T Consensus 79 t~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~------------------------------~l~~~l~~~~~~~~-- 125 (335)
T 2r3s_A 79 TSDSAMFLDRQS-KFYVGDAIEFLLSPMITNGFN------------------------------DLTAAVLKGGTAIS-- 125 (335)
T ss_dssp CHHHHHHTCTTS-TTCCGGGHHHHTCHHHHGGGT------------------------------THHHHHHHTSCCST--
T ss_pred CHHHHHHhccCC-cHHHHHHHHHhcchhhHHHHH------------------------------hHHHHHhcCCCCCC--
Confidence 99994 554433 456777776655544555554 89999999887654
Q ss_pred cCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhcc--CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHH
Q 016366 185 HGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGF--QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHV 262 (390)
Q Consensus 185 ~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~--~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~ 262 (390)
+ |+++.++++....|...|..........+++.++ + .+..+|||||||+|.++..+++++|+.+++++|++.+
T Consensus 126 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~ 200 (335)
T 2r3s_A 126 ---S-EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASV 200 (335)
T ss_dssp ---T-TGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHH
T ss_pred ---C-cccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHH
Confidence 3 7888889999999999999988887788888887 6 7788999999999999999999999999999999888
Q ss_pred HhhCCCC-------CCceEEECCCCC-CCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCc
Q 016366 263 VQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEV 333 (390)
Q Consensus 263 ~~~a~~~-------~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~ 333 (390)
++.+++. ++|+++.+|+++ +++.. |+|++.+++|+++++++.++|++++++|+|||+++|.|...++....
T Consensus 201 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~ 280 (335)
T 2r3s_A 201 LEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRIT 280 (335)
T ss_dssp HHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSC
T ss_pred HHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCC
Confidence 8887753 479999999998 67765 99999999999999999999999999999999999999987664322
Q ss_pred chHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEe
Q 016366 334 SSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFF 389 (390)
Q Consensus 334 ~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 389 (390)
. .....+++.|+...++++.++.++|+++++++||+++++.+..+..++++++
T Consensus 281 ~---~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 281 P---PDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp S---HHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred c---hHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 2 2344667777766557899999999999999999999999998888877765
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=331.98 Aligned_cols=313 Identities=19% Similarity=0.341 Sum_probs=259.7
Q ss_pred HhhHHHHHHHHHHh-hhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccC
Q 016366 20 EEEESYSHAMQLAM-GVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG 98 (390)
Q Consensus 20 ~~~~~~~~l~~~~~-~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~ 98 (390)
+..++..++++++. +++.+++|++++++|||+.|.+ ||.|++|||+++|+ +++.++||||+|++.|+|.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~-~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~---- 96 (359)
T 1x19_A 26 DLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE-GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINL---- 96 (359)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC-CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeEe----
Confidence 33456677888885 8999999999999999999997 79999999999999 99999999999999999996
Q ss_pred CCcceecCccccccccCCCC---CChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHh
Q 016366 99 GERLYALNPVSKYFVSNKDG---ASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVM 175 (390)
Q Consensus 99 ~~~~y~~t~~s~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 175 (390)
.++.|++|+.+..+..+.++ .++++++.+. .+..+..|. .|.++++
T Consensus 97 ~~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------------------------~L~~~l~ 145 (359)
T 1x19_A 97 EDGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYM------------------------------GLSQAVR 145 (359)
T ss_dssp ETTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGG------------------------------GHHHHHT
T ss_pred eCCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHH------------------------------HHHHHHh
Confidence 35699999976655555444 5677766553 233444454 8899998
Q ss_pred cCCchhhhhcCCChhhhcccCch---HHHHHHHHHhhccH-HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC
Q 016366 176 EGGIPFNRVHGMHIFEYASGNPR---FNETYHEAMFNHST-IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ 251 (390)
Q Consensus 176 ~g~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~m~~~~~-~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~ 251 (390)
+|.+ |++...+|+ ....|...|..... ...+.+++.++ +.+..+|||||||+|.++..+++++|+
T Consensus 146 ~g~~----------~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~ 214 (359)
T 1x19_A 146 GQKN----------FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPE 214 (359)
T ss_dssp TSCC----------CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTT
T ss_pred cCCC----------CcccccCchhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCC
Confidence 7653 677778888 89999999999888 77788888887 788899999999999999999999999
Q ss_pred CeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 252 IKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 252 ~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.+++++|++.+++.+++. ++|+++.+|+++ +++.+|+|++.+++|+|+++++.++|++++++|+|||+++|.
T Consensus 215 ~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~ 294 (359)
T 1x19_A 215 LDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLIL 294 (359)
T ss_dssp CEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999999998888887742 469999999998 666669999999999999988999999999999999999999
Q ss_pred ecccCCCCCcchHHhhhhhhhhhhhhhcCCCcc----cCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 324 NSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE----RTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 324 e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
|...++...+ .. ...+ .|+....+++. ++.++|+++|+++||+++++.+.+ ..++++++|
T Consensus 295 e~~~~~~~~~-~~---~~~~--~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 295 DMVIDDPENP-NF---DYLS--HYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp EECCCCTTSC-CH---HHHH--HHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred ecccCCCCCc-hH---HHHH--HHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 9887664211 11 1122 33332335667 999999999999999999999887 888999987
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-42 Score=328.60 Aligned_cols=316 Identities=14% Similarity=0.205 Sum_probs=258.4
Q ss_pred HhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCC
Q 016366 20 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (390)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~ 99 (390)
...++...+++++.+++.+++|++++++|||+.|.+ |.|++|||+++|+ +++.++||||+|++.|++.+ .
T Consensus 20 ~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~--~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll~~----~ 89 (352)
T 3mcz_A 20 AALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT--GRTPAEVAASFGM----VEGKAAILLHALAALGLLTK----E 89 (352)
T ss_dssp CCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----E
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC--CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCeEe----c
Confidence 334555669999999999999999999999999975 9999999999999 99999999999999999996 3
Q ss_pred CcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCCc
Q 016366 100 ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGI 179 (390)
Q Consensus 100 ~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~ 179 (390)
++.|++|+.+..++.+..+.+++.++.+. ...+..|. +|.+.+++|.+
T Consensus 90 ~~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~------------------------------~l~~~l~~g~~ 137 (352)
T 3mcz_A 90 GDAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWP------------------------------RLGEILRSEKP 137 (352)
T ss_dssp TTEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGG------------------------------GHHHHHTCSSC
T ss_pred CCeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHH------------------------------HHHHHHhCCCC
Confidence 57899999998776666556677665432 12333443 89999998865
Q ss_pred h-hhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCC-cceEEEEcCCccHHHHHHHhhCCCCeEEEe
Q 016366 180 P-FNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQN-VERLVDVGGGFGVTLSMITSKYPQIKAVNF 257 (390)
Q Consensus 180 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~-~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~ 257 (390)
. |... .++..+|+....|.++|...... +..+++.++ +.+ ..+|||||||+|.++..+++++|+.+++++
T Consensus 138 ~~f~~~------~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~ 209 (352)
T 3mcz_A 138 LAFQQE------SRFAHDTRARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIW 209 (352)
T ss_dssp CTTSHH------HHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEE
T ss_pred CCcccc------cccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEE
Confidence 3 2221 23356888889999999873332 346788887 666 889999999999999999999999999999
Q ss_pred cchHHHhhCCCC-------CCceEEECCCCC-C--CCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 258 DLPHVVQDAPSY-------AGVEHVGGNMFE-S--VPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 258 Dl~~~~~~a~~~-------~rv~~~~gd~~~-~--~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|++.+++.+++. ++|+++.+|+++ + .+.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|.+
T Consensus 210 D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (352)
T 3mcz_A 210 DLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMT 289 (352)
T ss_dssp ECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 998888877652 479999999998 4 5665 9999999999999999999999999999999999999998
Q ss_pred cCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 327 VPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 327 ~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
.++..... .....+++.|+....+++.++.++|+++|+++||++++.. .+..++++++|
T Consensus 290 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 290 MNDDRVTP---ALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp CCTTSSSS---HHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred cCCCCCCC---chHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 87754322 2345678888766668899999999999999999999843 36678888776
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=173.95 Aligned_cols=171 Identities=13% Similarity=0.185 Sum_probs=126.3
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhC--CCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~ 285 (390)
.+++.+ .+++.+|||||||+|.++..+++++ |+++++++|+ +.|++.|+++ .+|+++++|+.+ +++.
T Consensus 62 ~l~~~~--~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~ 139 (261)
T 4gek_A 62 MLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN 139 (261)
T ss_dssp HHHHHH--CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCS
T ss_pred HHHHHh--CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccc
Confidence 344443 3577899999999999999999975 6789999998 8899988752 579999999988 6666
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhh-hc------------C
Q 016366 286 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT-RD------------G 352 (390)
Q Consensus 286 ~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~------------~ 352 (390)
.|+|++.+++|++++++..++|++++++|+|||++++.|.....++...... .....++.... .. .
T Consensus 140 ~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~ei~~~~~~l~~ 218 (261)
T 4gek_A 140 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELL-FNMHHDFKRANGYSELEISQKRSMLEN 218 (261)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHH-HHHHHHHHHHTTGGGSTTHHHHHHHHH
T ss_pred cccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHhhhcc
Confidence 6999999999999998888999999999999999999998876643211000 00000000000 00 0
Q ss_pred CCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 353 GGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 353 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
--...+.+++.++|+++||+.++++..-.++..+.++|
T Consensus 219 ~~~~~s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 219 VMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp HCCCBCHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred cccCCCHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 01346889999999999999999876555555555665
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-19 Score=162.01 Aligned_cols=174 Identities=15% Similarity=0.181 Sum_probs=130.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----CCceEEECCCCC-CCCCC-cE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG-DA 288 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~-~~p~~-D~ 288 (390)
..++..++...+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++++|+.+ +.+.. |+
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 44455444334668999999999999999999999999999998 8888877652 489999999988 55544 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhh------------hhhhcCCCcc
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL------------LMTRDGGGRE 356 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~------------~~~~~~~g~~ 356 (390)
|++..++|++++++...+|++++++|+|||++++.+...++....... ....+.... ..........
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENL-NKTIWRQYVENSGLTEEEIAAGYERSKLDKD 191 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHH-HHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhH-HHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence 999999999999888889999999999999999999887653211000 000000000 0000013455
Q ss_pred cCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 357 RTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 357 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
++.+++.++|+++||+.+++......++++..+|
T Consensus 192 ~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~ 225 (234)
T 3dtn_A 192 IEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRK 225 (234)
T ss_dssp CBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred cCHHHHHHHHHHcCCCceeeeeeecceeEEEEEe
Confidence 7899999999999999999988887777766543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-19 Score=160.68 Aligned_cols=169 Identities=14% Similarity=0.218 Sum_probs=122.1
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE 285 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~ 285 (390)
...+++.++ ..+. +|||||||+|.++..++++ |+.+++++|+ +.+++.+++. ++++++++|+.+ +++.
T Consensus 33 ~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 33 AENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 345555555 3444 9999999999999999998 7889999998 8888877753 579999999988 6665
Q ss_pred C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhh-hhhhhhhcCCCcccCHHHH
Q 016366 286 G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL-DVLLMTRDGGGRERTKKEY 362 (390)
Q Consensus 286 ~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~g~~~t~~e~ 362 (390)
. |+|++..++|++++.. .+|+++++.|+|||++++.+...+............... .+..... .....++.++|
T Consensus 110 ~~~D~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 186 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDVA--TAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNR-KNISQENVERF 186 (219)
T ss_dssp TCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHH-HHSSHHHHHHH
T ss_pred ccccEEEECchHhhccCHH--HHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhh-hccccCCHHHH
Confidence 4 9999999999997765 899999999999999999876543310000000000000 0000000 12334578999
Q ss_pred HHHHHHCCCCeeEEEecCCceeEEEEe
Q 016366 363 TELAIAAGFKGINFASCVCNLYIMEFF 389 (390)
Q Consensus 363 ~~ll~~aGf~~~~~~~~~~~~~vi~~~ 389 (390)
.++|+++||+++++.......+++..+
T Consensus 187 ~~~l~~aGf~~v~~~~~~~~~~~~~~k 213 (219)
T 3dlc_A 187 QNVLDEIGISSYEIILGDEGFWIIISK 213 (219)
T ss_dssp HHHHHHHTCSSEEEEEETTEEEEEEBC
T ss_pred HHHHHHcCCCeEEEEecCCceEEEEec
Confidence 999999999999999888777765543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.4e-18 Score=151.80 Aligned_cols=154 Identities=15% Similarity=0.158 Sum_probs=125.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~- 286 (390)
.+++.++ ..+..+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++. ++++++.+|+.+ +++..
T Consensus 28 ~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 106 (219)
T 3dh0_A 28 KVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNT 106 (219)
T ss_dssp HHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSC
T ss_pred HHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCC
Confidence 4555565 6677899999999999999999987 8889999998 8888887753 579999999987 66654
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
|+|++..++|++++.. .+|++++++|+|||++++.+.......... .....++.++|.++
T Consensus 107 fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~ 167 (219)
T 3dh0_A 107 VDFIFMAFTFHELSEPL--KFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PPEEVYSEWEVGLI 167 (219)
T ss_dssp EEEEEEESCGGGCSSHH--HHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CGGGSCCHHHHHHH
T ss_pred eeEEEeehhhhhcCCHH--HHHHHHHHHhCCCeEEEEEEecccccccCC-----------------chhcccCHHHHHHH
Confidence 9999999999998765 899999999999999999987655431110 01223589999999
Q ss_pred HHHCCCCeeEEEecCCceeEEEEeC
Q 016366 366 AIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 366 l~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
++++||+++++.........+.++|
T Consensus 168 l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 168 LEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHCCCEEEEEEeeCCceEEEEEEe
Confidence 9999999999998887777777665
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=148.40 Aligned_cols=167 Identities=14% Similarity=0.132 Sum_probs=121.0
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--CCceEEECCCCC-CCCCC-cEEEe
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPEG-DAILM 291 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--~rv~~~~gd~~~-~~p~~-D~i~~ 291 (390)
.+++.+. ..+..+|||||||+|.++..++++ +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 4445554 456789999999999999999987 568999998 8888887754 489999999988 66533 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhh---hhhh-hhhcCCCcccCHHHHHHHHH
Q 016366 292 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL---DVLL-MTRDGGGRERTKKEYTELAI 367 (390)
Q Consensus 292 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~---d~~~-~~~~~~g~~~t~~e~~~ll~ 367 (390)
.+++|++++++...+|++++++|+|||++++.++..+.... ........ .... .........++.++|.++|+
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 189 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDA---YDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFE 189 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHH---HHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHH
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHH---HHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHH
Confidence 99999999988777999999999999999999876544211 00000000 0000 00000123458999999999
Q ss_pred HCCCCeeEEEecCCceeEEEEeC
Q 016366 368 AAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 368 ~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
++||+++.+.. ....+++.+.|
T Consensus 190 ~aGf~v~~~~~-~~~~w~~~~~~ 211 (220)
T 3hnr_A 190 NNGFHVTFTRL-NHFVWVMEATK 211 (220)
T ss_dssp HTTEEEEEEEC-SSSEEEEEEEE
T ss_pred HCCCEEEEeec-cceEEEEeehh
Confidence 99998765544 46777776653
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.5e-18 Score=155.44 Aligned_cols=153 Identities=16% Similarity=0.298 Sum_probs=117.5
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~- 286 (390)
..+++.++ ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 27 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 103 (260)
T 1vl5_A 27 AKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER 103 (260)
T ss_dssp HHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCC
Confidence 45666666 56778999999999999999999876 7888998 8888887653 579999999988 77654
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhh-hhhcCCCcccCHHHHHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLL-MTRDGGGRERTKKEYTE 364 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~g~~~t~~e~~~ 364 (390)
|+|++..++|++++.. .+|++++++|+|||++++.+...+..+ .. ..+..... .........++.++|.+
T Consensus 104 fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (260)
T 1vl5_A 104 FHIVTCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVDNSAPEND---AF---DVFYNYVEKERDYSHHRAWKKSDWLK 175 (260)
T ss_dssp EEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEBCSSH---HH---HHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred EEEEEEhhhhHhcCCHH--HHHHHHHHHcCCCCEEEEEEcCCCCCH---HH---HHHHHHHHHhcCccccCCCCHHHHHH
Confidence 9999999999999876 899999999999999999988765531 11 11111111 11111345678999999
Q ss_pred HHHHCCCCeeEEEec
Q 016366 365 LAIAAGFKGINFASC 379 (390)
Q Consensus 365 ll~~aGf~~~~~~~~ 379 (390)
+|+++||+++++...
T Consensus 176 ~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 176 MLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHTCEEEEEEEE
T ss_pred HHHHCCCeEEEEEEe
Confidence 999999998877654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=152.87 Aligned_cols=156 Identities=18% Similarity=0.307 Sum_probs=122.4
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----CCceEEECCCCC-CCCCC--
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG-- 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~-~~p~~-- 286 (390)
...+++.++ ..+..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 345566665 6677899999999999999999987 678999998 7888877754 689999999988 66654
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
|+|++..++||+++++...+|++++++|+|||++++.+...+..... . ..+...... .+...++.++|.+++
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~----~~~~~~~~~--~~~~~~~~~~~~~~l 193 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENW--D----DEFKEYVKQ--RKYTLITVEEYADIL 193 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGC--C----HHHHHHHHH--HTCCCCCHHHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccc--h----HHHHHHHhc--CCCCCCCHHHHHHHH
Confidence 99999999999987778899999999999999999999876541111 0 011111111 134567999999999
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
+++||+++++....
T Consensus 194 ~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 194 TACNFKNVVSKDLS 207 (266)
T ss_dssp HHTTCEEEEEEECH
T ss_pred HHcCCeEEEEEeCC
Confidence 99999999887654
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=147.75 Aligned_cols=160 Identities=16% Similarity=0.103 Sum_probs=114.1
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--CCceEEECCCCCCCCCC--cEEE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFESVPEG--DAIL 290 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--~rv~~~~gd~~~~~p~~--D~i~ 290 (390)
..+++.+....+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ++++++++|+.+..+.+ |+|+
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 344555543556679999999999999999998 468899998 8888888763 67999999998864443 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCC-------CcccCHHHHH
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG-------GRERTKKEYT 363 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-------g~~~t~~e~~ 363 (390)
+.+++|+++++....+|+++++.|+|||++++.+...+.......... ........ ..+. ...++.++|.
T Consensus 113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 189 (218)
T 3ou2_A 113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS--EPEVAVRR-TLQDGRSFRIVKVFRSPAELT 189 (218)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEEE-ECTTSCEEEEECCCCCHHHHH
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc--ccccceee-ecCCcchhhHhhcCCCHHHHH
Confidence 999999999987889999999999999999999887543211000000 00000000 0011 1245999999
Q ss_pred HHHHHCCCCeeEEEecC
Q 016366 364 ELAIAAGFKGINFASCV 380 (390)
Q Consensus 364 ~ll~~aGf~~~~~~~~~ 380 (390)
++++++||++.......
T Consensus 190 ~~l~~aGf~v~~~~~~~ 206 (218)
T 3ou2_A 190 ERLTALGWSCSVDEVHP 206 (218)
T ss_dssp HHHHHTTEEEEEEEEET
T ss_pred HHHHHCCCEEEeeeccc
Confidence 99999999955444433
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-18 Score=154.87 Aligned_cols=161 Identities=14% Similarity=0.136 Sum_probs=115.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC--cEEEecccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKWILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~ 297 (390)
...+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .+++++++|+.+ +++.+ |+|++..++|+
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 468999999999999999999887 7888887 8888887753 689999999988 66643 99999999777
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcc--h-HHhhhhhhhhhhhh--------hc-C-------CCcccC
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVS--S-AARETSLLDVLLMT--------RD-G-------GGRERT 358 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~--~-~~~~~~~~d~~~~~--------~~-~-------~g~~~t 358 (390)
+...+..++|++++++|+|||++++.++..+...... . ......+....+.. .+ . ....++
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 195 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWG 195 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehhhhc
Confidence 7777778999999999999999999876532210000 0 00000000000000 00 0 011122
Q ss_pred HHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 359 KKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 359 ~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
.+|.++|+++||+.+++..+....++++.+|
T Consensus 196 -~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 196 -KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp -HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred -hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 4899999999999999999988888988875
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=151.87 Aligned_cols=157 Identities=15% Similarity=0.195 Sum_probs=121.9
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE 285 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~ 285 (390)
...+++.++ ..+..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 345666666 6678899999999999999999987 679999998 7788777642 479999999988 6665
Q ss_pred C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHH
Q 016366 286 G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT 363 (390)
Q Consensus 286 ~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~ 363 (390)
+ |+|++..++||+++.. .+|++++++|+|||++++.+.......... . ....+..... ++.+..++.++|.
T Consensus 128 ~~fD~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~---~~~~~~~~~~-~~~~~~~~~~~~~ 200 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDRG--RALREMARVLRPGGTVAIADFVLLAPVEGA-K---KEAVDAFRAG-GGVLSLGGIDEYE 200 (273)
T ss_dssp TCEEEEEEESCTTTSSCHH--HHHHHHHTTEEEEEEEEEEEEEESSCCCHH-H---HHHHHHHHHH-HTCCCCCCHHHHH
T ss_pred CCccEEEEechhhhCCCHH--HHHHHHHHHcCCCeEEEEEEeeccCCCChh-H---HHHHHHHHhh-cCccCCCCHHHHH
Confidence 4 9999999999998865 899999999999999999998765422111 1 1111111111 2356778999999
Q ss_pred HHHHHCCCCeeEEEecC
Q 016366 364 ELAIAAGFKGINFASCV 380 (390)
Q Consensus 364 ~ll~~aGf~~~~~~~~~ 380 (390)
++++++||+++++...+
T Consensus 201 ~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 201 SDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHTTCEEEEEEECH
T ss_pred HHHHHcCCeEEEEEECc
Confidence 99999999999887764
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.4e-17 Score=147.67 Aligned_cols=163 Identities=15% Similarity=0.294 Sum_probs=120.3
Q ss_pred HHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC
Q 016366 203 YHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE 281 (390)
Q Consensus 203 ~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~ 281 (390)
|..............+...++.+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~ 92 (240)
T 3dli_A 17 FEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIE 92 (240)
T ss_dssp HHHHHTCCHHHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHH
Confidence 3333333333344445455554566789999999999999999988 446889998 8889888865 9999999876
Q ss_pred ---CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcc
Q 016366 282 ---SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE 356 (390)
Q Consensus 282 ---~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 356 (390)
+++.+ |+|++.+++||+++++...+|++++++|+|||++++..+.... .. ...+.. ........
T Consensus 93 ~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----~~----~~~~~~--~~~~~~~~ 161 (240)
T 3dli_A 93 YLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS-----LY----SLINFY--IDPTHKKP 161 (240)
T ss_dssp HHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS-----HH----HHHHHT--TSTTCCSC
T ss_pred HhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch-----hH----HHHHHh--cCcccccc
Confidence 55544 9999999999999887789999999999999999987765322 11 111111 11123456
Q ss_pred cCHHHHHHHHHHCCCCeeEEEecC
Q 016366 357 RTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 357 ~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
++.+++.++++++||+++++....
T Consensus 162 ~~~~~l~~~l~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 162 VHPETLKFILEYLGFRDVKIEFFE 185 (240)
T ss_dssp CCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred CCHHHHHHHHHHCCCeEEEEEEec
Confidence 789999999999999999887654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.6e-18 Score=154.07 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=118.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-CCCceEEECCCCC-CCCCC-cEEEecc-ccccCCh
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFE-SVPEG-DAILMKW-ILHCWDD 300 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~-~~p~~-D~i~~~~-vlh~~~d 300 (390)
.+..+|||||||+|.++..++++.+ +++++|+ +.+++.+++ .++++++++|+.+ +.+.. |+|++.. ++|++++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 4568999999999999999999864 6788888 888888876 3689999999988 55544 9999998 9999974
Q ss_pred -hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHH--------------------hhhhhhhhhhhhhcCC------
Q 016366 301 -DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAA--------------------RETSLLDVLLMTRDGG------ 353 (390)
Q Consensus 301 -~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~--------------------~~~~~~d~~~~~~~~~------ 353 (390)
++..++|++++++|+|||+++|.+...++........ .....+++.+.....+
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHH 206 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEE
Confidence 5677899999999999999998654433321100000 0000011111110011
Q ss_pred -----CcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 354 -----GRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 354 -----g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
.+.++.++|.++|+++||+++++........+++++|
T Consensus 207 ~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 207 EESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2346899999999999999999987777777777765
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-17 Score=152.54 Aligned_cols=162 Identities=18% Similarity=0.202 Sum_probs=121.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~- 286 (390)
..+++.++ ..+..+|||||||+|.++..++++++ .+++++|+ +.+++.+++. ++++++.+|+.+ +|..
T Consensus 54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~f 130 (287)
T 1kpg_A 54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEPV 130 (287)
T ss_dssp HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCCC
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCCe
Confidence 45566665 66778999999999999999997765 48999998 7888877652 589999999965 3343
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCC-----cchHHhhhhhhhhhhhhhcCCCcccCHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPE-----VSSAARETSLLDVLLMTRDGGGRERTKKE 361 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~g~~~t~~e 361 (390)
|+|++..++||+++++...+|++++++|+|||++++.+...+.... ...........+......++++..++.++
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 210 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM 210 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHH
Confidence 9999999999997666679999999999999999999987654211 00000001111211122235778889999
Q ss_pred HHHHHHHCCCCeeEEEecC
Q 016366 362 YTELAIAAGFKGINFASCV 380 (390)
Q Consensus 362 ~~~ll~~aGf~~~~~~~~~ 380 (390)
+.++++++||+++++....
T Consensus 211 ~~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 211 VQECASANGFTVTRVQSLQ 229 (287)
T ss_dssp HHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHhCCcEEEEEEeCc
Confidence 9999999999999987654
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-17 Score=147.46 Aligned_cols=153 Identities=18% Similarity=0.326 Sum_probs=117.5
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~- 286 (390)
..+++.+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 11 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 11 GLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred chHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 45566666 67889999999999999999999875 7888887 7888877652 679999999987 66643
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhh-hhhhcCCCcccCHHHHHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL-LMTRDGGGRERTKKEYTE 364 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~g~~~t~~e~~~ 364 (390)
|+|++.+++|++++.. .+|++++++|+|||++++.+...+..+ ... .+.... ..........++.++|.+
T Consensus 88 fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (239)
T 1xxl_A 88 FDIITCRYAAHHFSDVR--KAVREVARVLKQDGRFLLVDHYAPEDP---VLD---EFVNHLNRLRDPSHVRESSLSEWQA 159 (239)
T ss_dssp EEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECBCSSH---HHH---HHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred EEEEEECCchhhccCHH--HHHHHHHHHcCCCcEEEEEEcCCCCCh---hHH---HHHHHHHHhccccccCCCCHHHHHH
Confidence 9999999999998765 899999999999999999988765431 111 111111 111111345678999999
Q ss_pred HHHHCCCCeeEEEec
Q 016366 365 LAIAAGFKGINFASC 379 (390)
Q Consensus 365 ll~~aGf~~~~~~~~ 379 (390)
+|+++||+++++...
T Consensus 160 ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 160 MFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHCCCcEEEEEee
Confidence 999999998887654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-17 Score=151.64 Aligned_cols=155 Identities=17% Similarity=0.254 Sum_probs=119.2
Q ss_pred HHHHHHHh---hccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-C
Q 016366 215 MERILEHY---EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S 282 (390)
Q Consensus 215 ~~~l~~~~---~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~ 282 (390)
...+++.+ +.+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +
T Consensus 67 ~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145 (297)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred HHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence 34566666 126678899999999999999999986 468999998 7888877652 579999999988 7
Q ss_pred CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHH
Q 016366 283 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKK 360 (390)
Q Consensus 283 ~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~ 360 (390)
++.+ |+|++..++||+++. ..+|++++++|+|||++++.++..++...... ...... ... .....+.+
T Consensus 146 ~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~---~~~~~~---~~~--~~~~~~~~ 215 (297)
T 2o57_A 146 CEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKSS---IQPILD---RIK--LHDMGSLG 215 (297)
T ss_dssp SCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCGGG---GHHHHH---HHT--CSSCCCHH
T ss_pred CCCCCEeEEEecchhhhcCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCchHH---HHHHHH---Hhc--CCCCCCHH
Confidence 6654 999999999999984 48999999999999999999987655322111 111111 111 23356899
Q ss_pred HHHHHHHHCCCCeeEEEecC
Q 016366 361 EYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 361 e~~~ll~~aGf~~~~~~~~~ 380 (390)
+|.++++++||+++++....
T Consensus 216 ~~~~~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 216 LYRSLAKECGLVTLRTFSRP 235 (297)
T ss_dssp HHHHHHHHTTEEEEEEEECH
T ss_pred HHHHHHHHCCCeEEEEEECc
Confidence 99999999999999887653
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-17 Score=151.79 Aligned_cols=149 Identities=17% Similarity=0.287 Sum_probs=117.3
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----CCceEEECCCCC-CCCCC--c
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--D 287 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~-~~p~~--D 287 (390)
..+++.++ ..+..+|||||||+|.++..++++. ..+++++|+ +.+++.+++. ++++++++|+.+ +++.+ |
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 45555555 5567899999999999999999886 457889997 7888877653 579999999987 66543 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHH
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 367 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~ 367 (390)
+|++.+++|++++++..++|++++++|+|||++++.+........ ..+ .......++.++|.++|+
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~-----~~~~~~~~~~~~~~~~l~ 226 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVD-----KEDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEE-----TTTTEEEBCHHHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---------eec-----ccCCcccCCHHHHHHHHH
Confidence 999999999999888889999999999999999999875443210 000 011334578999999999
Q ss_pred HCCCCeeEEEecC
Q 016366 368 AAGFKGINFASCV 380 (390)
Q Consensus 368 ~aGf~~~~~~~~~ 380 (390)
++||+++++....
T Consensus 227 ~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 227 ESGVRVVKEAFQE 239 (254)
T ss_dssp HHTCCEEEEEECT
T ss_pred HCCCEEEEeeecC
Confidence 9999999987664
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=149.91 Aligned_cols=163 Identities=17% Similarity=0.260 Sum_probs=123.7
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~- 286 (390)
..+++.++ ..+..+|||||||+|.++..++++++ .+++++|+ +.+++.+++. ++++++.+|+.+. +..
T Consensus 62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~f 138 (302)
T 3hem_A 62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPV 138 (302)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCC
T ss_pred HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCc
Confidence 45666665 67778999999999999999999976 78999998 8888887752 3799999999754 444
Q ss_pred cEEEeccccccCCh-------hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchH-----HhhhhhhhhhhhhhcCCC
Q 016366 287 DAILMKWILHCWDD-------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSA-----ARETSLLDVLLMTRDGGG 354 (390)
Q Consensus 287 D~i~~~~vlh~~~d-------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~g 354 (390)
|+|++..++|++++ +....+|++++++|+|||++++.+...++....... .....+.++.....++++
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 218 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG 218 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCC
Confidence 99999999999955 556799999999999999999998876542100000 000001122222234577
Q ss_pred cccCHHHHHHHHHHCCCCeeEEEecCC
Q 016366 355 RERTKKEYTELAIAAGFKGINFASCVC 381 (390)
Q Consensus 355 ~~~t~~e~~~ll~~aGf~~~~~~~~~~ 381 (390)
..++.+++.++++++||+++++.....
T Consensus 219 ~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 219 RLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 889999999999999999999887653
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.71 E-value=6e-17 Score=147.93 Aligned_cols=153 Identities=10% Similarity=0.060 Sum_probs=117.1
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE 285 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~ 285 (390)
...+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++++|+.+ +.+.
T Consensus 25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 345666665 6677899999999999999999987 568899998 8888877652 479999999988 4433
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHH
Q 016366 286 G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 364 (390)
Q Consensus 286 ~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ 364 (390)
. |+|++..++|++++.. ++|++++++|+|||++++.++.....+..... ... ... ......++.++|.+
T Consensus 103 ~fD~V~~~~~~~~~~~~~--~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~------~~~-~~~-~~~~~~~~~~~~~~ 172 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGFA--GAEELLAQSLKPGGIMLIGEPYWRQLPATEEI------AQA-CGV-SSTSDFLTLPGLVG 172 (256)
T ss_dssp CEEEEEEESCGGGTSSSH--HHHHHHTTSEEEEEEEEEEEEEETTCCSSHHH------HHT-TTC-SCGGGSCCHHHHHH
T ss_pred CCCEEEECCChHhcCCHH--HHHHHHHHHcCCCeEEEEecCcccCCCChHHH------HHH-Hhc-ccccccCCHHHHHH
Confidence 3 9999999999998755 89999999999999999998876543221110 000 000 01224678999999
Q ss_pred HHHHCCCCeeEEEec
Q 016366 365 LAIAAGFKGINFASC 379 (390)
Q Consensus 365 ll~~aGf~~~~~~~~ 379 (390)
+++++||+++++...
T Consensus 173 ~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 173 AFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHTTTBCCCEEEEC
T ss_pred HHHHCCCeeEEEEeC
Confidence 999999999887654
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-16 Score=145.18 Aligned_cols=153 Identities=10% Similarity=0.132 Sum_probs=116.7
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCC--cEEE
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAIL 290 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~ 290 (390)
...+++.++ ..+..+|||||||+|.++..+++ +..+++++|+ +.+++.+++..+++++.+|+.+ +++.+ |+|+
T Consensus 23 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 23 VNAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 345666665 56788999999999999999997 6789999998 8899999988899999999988 66643 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCC
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aG 370 (390)
+.+++|++++.. ++|++++++|+ ||++++.+...+.... .+.. ..+...... . ....++.+++. +|+++|
T Consensus 100 ~~~~l~~~~~~~--~~l~~~~~~Lk-gG~~~~~~~~~~~~~~-~~~~---~~~~~~~~~-~-~~~~~~~~~~~-~l~~aG 169 (261)
T 3ege_A 100 SILAIHHFSHLE--KSFQEMQRIIR-DGTIVLLTFDIRLAQR-IWLY---DYFPFLWED-A-LRFLPLDEQIN-LLQENT 169 (261)
T ss_dssp EESCGGGCSSHH--HHHHHHHHHBC-SSCEEEEEECGGGCCC-CGGG---GTCHHHHHH-H-HTSCCHHHHHH-HHHHHH
T ss_pred EcchHhhccCHH--HHHHHHHHHhC-CcEEEEEEcCCchhHH-HHHH---HHHHHHhhh-h-hhhCCCHHHHH-HHHHcC
Confidence 999999998765 89999999999 9999998875433211 1110 111100111 1 23445678889 999999
Q ss_pred CCeeEEEecC
Q 016366 371 FKGINFASCV 380 (390)
Q Consensus 371 f~~~~~~~~~ 380 (390)
|+.+++....
T Consensus 170 F~~v~~~~~~ 179 (261)
T 3ege_A 170 KRRVEAIPFL 179 (261)
T ss_dssp CSEEEEEECC
T ss_pred CCceeEEEec
Confidence 9999887663
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.1e-17 Score=146.64 Aligned_cols=163 Identities=15% Similarity=0.156 Sum_probs=117.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCceEEECCCCC-CCCCC-cEEEe-ccccccCCh
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAILM-KWILHCWDD 300 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~-~~p~~-D~i~~-~~vlh~~~d 300 (390)
.+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |+|++ ..++|++++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4568999999999999999999876 7888888 8888888764 689999999987 55444 99995 559999864
Q ss_pred -hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHh--------------------hhhhhhhhhhhhcCCC-----
Q 016366 301 -DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR--------------------ETSLLDVLLMTRDGGG----- 354 (390)
Q Consensus 301 -~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~--------------------~~~~~d~~~~~~~~~g----- 354 (390)
++..++|++++++|+|||++++.+...++......... ......+.++....++
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 56789999999999999999987665543211000000 0000011111100011
Q ss_pred ------cccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 355 ------RERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 355 ------~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
+.+|.++|+++|+++||+++.+....+...+++++|
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 356999999999999998877766666777888775
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=145.83 Aligned_cols=152 Identities=13% Similarity=0.094 Sum_probs=116.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~ 286 (390)
..++..+....+..+|||||||+|.++..+++.++. +++++|+ +.+++.+++. ++++++++|+.+ +++.+
T Consensus 35 ~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (257)
T 3f4k_A 35 RKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE 113 (257)
T ss_dssp HHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred HHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence 345555544567789999999999999999999985 8999998 7788877652 469999999987 66643
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHH
Q 016366 287 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 364 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ 364 (390)
|+|++..++|++ +. .++|++++++|+|||++++.+........... ..+.... . ....++.++|.+
T Consensus 114 ~fD~v~~~~~l~~~-~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------~~~~~~~-~--~~~~~~~~~~~~ 181 (257)
T 3f4k_A 114 ELDLIWSEGAIYNI-GF--ERGMNEWSKYLKKGGFIAVSEASWFTSERPAE------IEDFWMD-A--YPEISVIPTCID 181 (257)
T ss_dssp CEEEEEEESCSCCC-CH--HHHHHHHHTTEEEEEEEEEEEEEESSSCCCHH------HHHHHHH-H--CTTCCBHHHHHH
T ss_pred CEEEEEecChHhhc-CH--HHHHHHHHHHcCCCcEEEEEEeeccCCCChHH------HHHHHHH-h--CCCCCCHHHHHH
Confidence 999999999998 33 48999999999999999999976433221111 1111111 1 133568999999
Q ss_pred HHHHCCCCeeEEEecC
Q 016366 365 LAIAAGFKGINFASCV 380 (390)
Q Consensus 365 ll~~aGf~~~~~~~~~ 380 (390)
+++++||+++++...+
T Consensus 182 ~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 182 KMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHTTEEEEEEEECC
T ss_pred HHHHCCCeEEEEEECC
Confidence 9999999999987775
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=150.48 Aligned_cols=163 Identities=12% Similarity=0.108 Sum_probs=122.1
Q ss_pred HhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECC
Q 016366 207 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGN 278 (390)
Q Consensus 207 m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd 278 (390)
+..........+++.++.+.+..+|||||||+|.++..+++++ +.+++++|+ +.+++.++++ ++++++.+|
T Consensus 97 ~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 175 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN 175 (312)
T ss_dssp HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 4444444445566666545677899999999999999999985 578999998 8888877752 479999999
Q ss_pred CCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCc
Q 016366 279 MFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGR 355 (390)
Q Consensus 279 ~~~-~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~ 355 (390)
+.+ +++.+ |+|++..++|+++ ..++|++++++|+|||++++.+....+...... .......... ...
T Consensus 176 ~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~ 245 (312)
T 3vc1_A 176 MLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPS-----KWVSQINAHF--ECN 245 (312)
T ss_dssp TTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCC-----HHHHHHHHHH--TCC
T ss_pred hhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchh-----HHHHHHHhhh--cCC
Confidence 988 66644 9999999999994 558999999999999999999987665321110 0111111111 123
Q ss_pred ccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 356 ERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 356 ~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
.++.++|.++++++||+++++..+.
T Consensus 246 ~~s~~~~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 246 IHSRREYLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp CCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred CCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 6789999999999999999987754
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=147.48 Aligned_cols=151 Identities=13% Similarity=0.062 Sum_probs=116.8
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCC-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~- 286 (390)
.++..++.+.++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 44444443567789999999999999999998 7889999998 8888877652 579999999987 66544
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
|+|++..++|++ +. ..+|++++++|+|||++++.+........... ..+.... . ....++.+++.++
T Consensus 115 fD~i~~~~~~~~~-~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~------~~~~~~~-~--~~~~~~~~~~~~~ 182 (267)
T 3kkz_A 115 LDLIWSEGAIYNI-GF--ERGLNEWRKYLKKGGYLAVSECSWFTDERPAE------INDFWMD-A--YPEIDTIPNQVAK 182 (267)
T ss_dssp EEEEEESSCGGGT-CH--HHHHHHHGGGEEEEEEEEEEEEEESSSCCCHH------HHHHHHH-H--CTTCEEHHHHHHH
T ss_pred EEEEEEcCCceec-CH--HHHHHHHHHHcCCCCEEEEEEeeecCCCChHH------HHHHHHH-h--CCCCCCHHHHHHH
Confidence 999999999999 43 48999999999999999999986543322111 1111111 1 2345789999999
Q ss_pred HHHCCCCeeEEEecC
Q 016366 366 AIAAGFKGINFASCV 380 (390)
Q Consensus 366 l~~aGf~~~~~~~~~ 380 (390)
++++||+++++..++
T Consensus 183 l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 183 IHKAGYLPVATFILP 197 (267)
T ss_dssp HHHTTEEEEEEEECC
T ss_pred HHHCCCEEEEEEECC
Confidence 999999999988776
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.70 E-value=7.6e-17 Score=146.11 Aligned_cols=153 Identities=12% Similarity=0.165 Sum_probs=110.5
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-C-CceEEECCCCCCCCC-C-cEEEec
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-A-GVEHVGGNMFESVPE-G-DAILMK 292 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~-rv~~~~gd~~~~~p~-~-D~i~~~ 292 (390)
+++.+....+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++. . +++++++|+.+..+. . |+|++.
T Consensus 33 ~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~ 110 (250)
T 2p7i_A 33 MVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLT 110 (250)
T ss_dssp HHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEE
T ss_pred HHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEh
Confidence 333333234567899999999999999999887 5677777 7888887753 2 899999999875343 3 999999
Q ss_pred cccccCChhHHHHHHHHHH-HhCCCCcEEEEEecccCCCCCcchHHhhhhhhhh-------h-hhhhcCCCcccCHHHHH
Q 016366 293 WILHCWDDDHCLRILKNCY-KAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDV-------L-LMTRDGGGRERTKKEYT 363 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~-~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~-------~-~~~~~~~g~~~t~~e~~ 363 (390)
+++||+++.. ++|++++ ++|+|||++++.++..... .......... . ..........++.+++.
T Consensus 111 ~~l~~~~~~~--~~l~~~~~~~LkpgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (250)
T 2p7i_A 111 HVLEHIDDPV--ALLKRINDDWLAEGGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLE 183 (250)
T ss_dssp SCGGGCSSHH--HHHHHHHHTTEEEEEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHH
T ss_pred hHHHhhcCHH--HHHHHHHHHhcCCCCEEEEEcCChHHH-----HHHHHHHcCccccchhcccccccccccccCCHHHHH
Confidence 9999998875 8999999 9999999999987643221 0000000000 0 00011234567999999
Q ss_pred HHHHHCCCCeeEEEec
Q 016366 364 ELAIAAGFKGINFASC 379 (390)
Q Consensus 364 ~ll~~aGf~~~~~~~~ 379 (390)
++|+++||+++++...
T Consensus 184 ~~l~~~Gf~~~~~~~~ 199 (250)
T 2p7i_A 184 RDASRAGLQVTYRSGI 199 (250)
T ss_dssp HHHHHTTCEEEEEEEE
T ss_pred HHHHHCCCeEEEEeee
Confidence 9999999999988643
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-16 Score=149.51 Aligned_cols=163 Identities=16% Similarity=0.274 Sum_probs=121.5
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~ 286 (390)
...+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +|..
T Consensus 79 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~ 155 (318)
T 2fk8_A 79 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEP 155 (318)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCC
Confidence 345566665 6677899999999999999999986 568999998 7888877652 569999999865 2343
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcc----hHH-hhhhhhhhhhhhhcCCCcccCHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVS----SAA-RETSLLDVLLMTRDGGGRERTKK 360 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~----~~~-~~~~~~d~~~~~~~~~g~~~t~~ 360 (390)
|+|++..++|++++++..++|++++++|+|||++++.+...+...... ... ......+......++++..++.+
T Consensus 156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 235 (318)
T 2fk8_A 156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTE 235 (318)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred cCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHH
Confidence 999999999999877777999999999999999999998765421000 000 00011122111223567788999
Q ss_pred HHHHHHHHCCCCeeEEEecC
Q 016366 361 EYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 361 e~~~ll~~aGf~~~~~~~~~ 380 (390)
++.++++++||+++++....
T Consensus 236 ~~~~~l~~aGf~~~~~~~~~ 255 (318)
T 2fk8_A 236 MMVEHGEKAGFTVPEPLSLR 255 (318)
T ss_dssp HHHHHHHHTTCBCCCCEECH
T ss_pred HHHHHHHhCCCEEEEEEecc
Confidence 99999999999999877653
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.4e-17 Score=150.06 Aligned_cols=150 Identities=18% Similarity=0.330 Sum_probs=115.2
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC--cEEEeccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKWI 294 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~--D~i~~~~v 294 (390)
+.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56778999999999999999999999999999998 7888877652 579999999987 66544 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCC---CCcchHH-hhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCC
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI---PEVSSAA-RETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~---~~~~~~~-~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aG 370 (390)
+|++++.. .+|++++++|+|||++++.+...... +...... ....... .... .++..++..++.++|+++|
T Consensus 115 l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~l~~~l~~aG 189 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIR--VQAY-MKGNSLVGRQIYPLLQESG 189 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHH--HHHH-TTCCTTGGGGHHHHHHHTT
T ss_pred hhhcCCHH--HHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHH--HHHh-cCCCcchHHHHHHHHHHCC
Confidence 99999876 89999999999999999988643221 1111111 1111111 1111 2556677899999999999
Q ss_pred CCeeEEEec
Q 016366 371 FKGINFASC 379 (390)
Q Consensus 371 f~~~~~~~~ 379 (390)
|+++++...
T Consensus 190 f~~v~~~~~ 198 (276)
T 3mgg_A 190 FEKIRVEPR 198 (276)
T ss_dssp CEEEEEEEE
T ss_pred CCeEEEeeE
Confidence 999988754
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.5e-17 Score=143.53 Aligned_cols=138 Identities=16% Similarity=0.074 Sum_probs=111.8
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-CCCceEEECCCCC-CCCCC--cEEEeccccccCChhH
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH 302 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~ 302 (390)
..+|||||||+|.++..++++ +.+++++|+ +.+++.+++ .++++++++|+.+ +++.+ |+|++.+++|+++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 689999999999999999988 457899998 888888876 4789999999988 66543 9999999999998667
Q ss_pred HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCC
Q 016366 303 CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVC 381 (390)
Q Consensus 303 ~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~ 381 (390)
...+|++++++|+|||++++.+...+... .+.. . ......++.++|.++|+++||+++++...+.
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~----------~~~~--~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 184 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLE----------PMYH--P--VATAYRWPLPELAQALETAGFQVTSSHWDPR 184 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCE----------EECC--S--SSCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchh----------hhhc--h--hhhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence 78999999999999999999886543310 0000 0 0123457899999999999999999987764
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=150.16 Aligned_cols=166 Identities=16% Similarity=0.166 Sum_probs=119.2
Q ss_pred cCCcceEEEEcCCccHHHHHHH-hhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCC-cEEEecc
Q 016366 225 FQNVERLVDVGGGFGVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~-~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~-D~i~~~~ 293 (390)
+.+..+|||||||+|.++..++ ...|+.+++++|+ +.+++.++++ ++++++++|+.+ +++.. |+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4577899999999999999996 6789999999998 8888877752 359999999988 66644 9999999
Q ss_pred ccccCChhH-HHHHHHHHHHhCCCCcEEEEEecccCCCCCcch--H----Hhhh-hhhhhhhhhhcCC--CcccCHHHHH
Q 016366 294 ILHCWDDDH-CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSS--A----ARET-SLLDVLLMTRDGG--GRERTKKEYT 363 (390)
Q Consensus 294 vlh~~~d~~-~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~--~----~~~~-~~~d~~~~~~~~~--g~~~t~~e~~ 363 (390)
++|++++.. ..++|++++++|+|||++++.+...+....... . .... ......+...... ...++.+++.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR 275 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence 999997554 446899999999999999998876543221100 0 0000 0000001111111 1347999999
Q ss_pred HHHHHCCCCeeEEEecC-CceeEEEEeC
Q 016366 364 ELAIAAGFKGINFASCV-CNLYIMEFFK 390 (390)
Q Consensus 364 ~ll~~aGf~~~~~~~~~-~~~~vi~~~k 390 (390)
++|+++||+++++.... .....+.++|
T Consensus 276 ~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 276 AQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 99999999999998755 3444555554
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-16 Score=140.34 Aligned_cols=142 Identities=18% Similarity=0.216 Sum_probs=110.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCC-CCCCC--cEEEeccccccC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAILMKWILHCW 298 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~ 298 (390)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +++.. |+|++.+++||+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 36679999999999999999998 457889998 8888888764 689999999988 66544 999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEe
Q 016366 299 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 378 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 378 (390)
++.. .+|++++++|+|||++++.+......... ...... . ........++.+++.++++++||++++...
T Consensus 130 ~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---~~~~~~----~-~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 130 EEPL--RALNEIKRVLKSDGYACIAILGPTAKPRE---NSYPRL----Y-GKDVVCNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp SCHH--HHHHHHHHHEEEEEEEEEEEECTTCGGGG---GGGGGG----G-TCCCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cCHH--HHHHHHHHHhCCCeEEEEEEcCCcchhhh---hhhhhh----c-cccccccCCCHHHHHHHHHHcCCEEEEeec
Confidence 8765 88999999999999999988654332111 000111 1 011133457899999999999999999875
Q ss_pred c
Q 016366 379 C 379 (390)
Q Consensus 379 ~ 379 (390)
+
T Consensus 200 ~ 200 (242)
T 3l8d_A 200 V 200 (242)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.4e-17 Score=137.69 Aligned_cols=146 Identities=15% Similarity=0.156 Sum_probs=116.7
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-CCCceEEECCCCCCCCCC--cEEEecc
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFESVPEG--DAILMKW 293 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~~~p~~--D~i~~~~ 293 (390)
+++.++ ..+..+|||||||+|.++..+++... +++++|+ +.+++.+++ .++++++.+| .+++.+ |+|++..
T Consensus 9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFAN 83 (170)
T ss_dssp THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEES
T ss_pred HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEcc
Confidence 444555 66778999999999999999999874 8899998 888888776 5789999999 444443 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCe
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKG 373 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 373 (390)
++|++++.. .+|+++++.|+|||++++.+.......... +....++.++|+++++ ||++
T Consensus 84 ~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~--Gf~~ 142 (170)
T 3i9f_A 84 SFHDMDDKQ--HVISEVKRILKDDGRVIIIDWRKENTGIGP-----------------PLSIRMDEKDYMGWFS--NFVV 142 (170)
T ss_dssp CSTTCSCHH--HHHHHHHHHEEEEEEEEEEEECSSCCSSSS-----------------CGGGCCCHHHHHHHTT--TEEE
T ss_pred chhcccCHH--HHHHHHHHhcCCCCEEEEEEcCccccccCc-----------------hHhhhcCHHHHHHHHh--CcEE
Confidence 999998765 899999999999999999987755432110 0122368999999998 9999
Q ss_pred eEEEecCCceeEEEEe
Q 016366 374 INFASCVCNLYIMEFF 389 (390)
Q Consensus 374 ~~~~~~~~~~~vi~~~ 389 (390)
+++.........+.++
T Consensus 143 ~~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 143 EKRFNPTPYHFGLVLK 158 (170)
T ss_dssp EEEECSSTTEEEEEEE
T ss_pred EEccCCCCceEEEEEe
Confidence 9999998777666654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.7e-17 Score=146.97 Aligned_cols=138 Identities=17% Similarity=0.259 Sum_probs=112.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC--cEEEeccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKWILH 296 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~--D~i~~~~vlh 296 (390)
+..+|||||||+|.++..++++. ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+ |+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999999887 568899998 8888877653 258899999877 55543 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEE
Q 016366 297 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINF 376 (390)
Q Consensus 297 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 376 (390)
+++++....+|++++++|+|||++++.++..+.. . .++ .......++.++|.++|+++||+++++
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--~--------~~~-----~~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG--V--------ILD-----DVDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS--E--------EEE-----TTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc--c--------eec-----ccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 9999888899999999999999999999876541 0 000 011334568999999999999999998
Q ss_pred EecC
Q 016366 377 ASCV 380 (390)
Q Consensus 377 ~~~~ 380 (390)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 7664
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.6e-16 Score=143.37 Aligned_cols=151 Identities=17% Similarity=0.246 Sum_probs=113.6
Q ss_pred HHHHHHhhccCCcceEEEEcCCc---cHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----CCceEEECCCCCC-----
Q 016366 216 ERILEHYEGFQNVERLVDVGGGF---GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFES----- 282 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~---G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~~----- 282 (390)
..+++.+....+..+|||||||+ |.++..+.+.+|+.+++++|+ |.|++.+++. ++++++++|+.++
T Consensus 66 ~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~ 145 (274)
T 2qe6_A 66 VRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILN 145 (274)
T ss_dssp HHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHH
T ss_pred HHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhc
Confidence 34444443123457999999999 999888888899999999999 8899988753 6899999999762
Q ss_pred -------CC--CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCC
Q 016366 283 -------VP--EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG 353 (390)
Q Consensus 283 -------~p--~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 353 (390)
++ ..|+|++..+||++++++...+|++++++|+|||+|++.+...+. + ... ....+....... .
T Consensus 146 ~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~-~--~~~---~~~~~~~~~~~~-~ 218 (274)
T 2qe6_A 146 HPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG-L--PAQ---QKLARITRENLG-E 218 (274)
T ss_dssp SHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS-C--HHH---HHHHHHHHHHHS-C
T ss_pred cchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc-h--HHH---HHHHHHHHhcCC-C
Confidence 22 239999999999999877789999999999999999999987532 1 111 112222221112 4
Q ss_pred CcccCHHHHHHHHHHCCCCeeE
Q 016366 354 GRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 354 g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
...++.+++.++| .||++++
T Consensus 219 ~~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 219 GWARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp CCCBCHHHHHHTT--TTCEECT
T ss_pred CccCCHHHHHHHh--CCCeEcc
Confidence 5678999999999 6998775
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=146.98 Aligned_cols=161 Identities=16% Similarity=0.192 Sum_probs=116.3
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~- 286 (390)
..+++.+....+..+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++. .+++++++|+.+ +.+..
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 90 (284)
T 3gu3_A 11 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKY 90 (284)
T ss_dssp HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCE
T ss_pred HHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCe
Confidence 344555543567889999999999999999999985 89999998 7788777652 379999999998 55554
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc-----C---CCCCcchHHhhhhhhhhhh--hhhcCCCcc
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV-----P---EIPEVSSAARETSLLDVLL--MTRDGGGRE 356 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~-----~---~~~~~~~~~~~~~~~d~~~--~~~~~~g~~ 356 (390)
|+|++..++|++++.. ++|+++++.|+|||++++.++.. . ++...........+..+.. ... .+...
T Consensus 91 D~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 167 (284)
T 3gu3_A 91 DIAICHAFLLHMTTPE--TMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQR-NGKDG 167 (284)
T ss_dssp EEEEEESCGGGCSSHH--HHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHH-TCCCT
T ss_pred eEEEECChhhcCCCHH--HHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhh-hcccc
Confidence 9999999999998875 89999999999999999988761 1 1110000000111111111 111 13445
Q ss_pred cCHHHHHHHHHHCCCCeeEEEec
Q 016366 357 RTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 357 ~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
.+.+++.++|+++||+.+++...
T Consensus 168 ~~~~~l~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 168 NIGMKIPIYLSELGVKNIECRVS 190 (284)
T ss_dssp TGGGTHHHHHHHTTCEEEEEEEC
T ss_pred cHHHHHHHHHHHcCCCeEEEEEc
Confidence 56788999999999999877543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-16 Score=141.74 Aligned_cols=142 Identities=11% Similarity=0.087 Sum_probs=108.1
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------------------CCceEEEC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------------AGVEHVGG 277 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------------------~rv~~~~g 277 (390)
.++..+. .....+|||+|||+|..+..++++ ..+++++|+ +.|++.+++. .+++++++
T Consensus 13 ~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 13 QYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 3344444 556789999999999999999997 458999998 8888877642 57999999
Q ss_pred CCCC-CCCC--C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCC
Q 016366 278 NMFE-SVPE--G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG 353 (390)
Q Consensus 278 d~~~-~~p~--~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 353 (390)
|+++ +.+. . |+|++..++|++++++..+++++++++|||||+++++....+... . ...
T Consensus 90 d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~---------------~---~~~ 151 (203)
T 1pjz_A 90 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL---------------L---EGP 151 (203)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS---------------S---SSC
T ss_pred ccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc---------------c---CCC
Confidence 9998 5442 3 999999999999988888899999999999999555544332210 0 001
Q ss_pred CcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 354 GRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 354 g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
....+.+++.+++++ ||++..+....
T Consensus 152 ~~~~~~~el~~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 152 PFSVPQTWLHRVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp CCCCCHHHHHHTSCS-SEEEEEEEESS
T ss_pred CCCCCHHHHHHHhcC-CcEEEEecccc
Confidence 112579999999998 99988776654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=148.57 Aligned_cols=175 Identities=10% Similarity=0.120 Sum_probs=116.0
Q ss_pred HHHHHHhhc-cHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---------C
Q 016366 202 TYHEAMFNH-STIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------A 270 (390)
Q Consensus 202 ~~~~~m~~~-~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---------~ 270 (390)
.|...+... .......+++.++ . ...+|||||||+|.++..++++ ..+++++|+ +.+++.+++. .
T Consensus 58 ~y~~~~~~~~~~~~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~ 133 (299)
T 3g2m_A 58 TYRDLIQDADGTSEAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRD 133 (299)
T ss_dssp --------CCCHHHHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHT
T ss_pred HHHHHhcccCccHHHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhccccccc
Confidence 344444432 3344556666665 2 3459999999999999999998 457888888 8888888753 5
Q ss_pred CceEEECCCCC-CCCCC-cEEEec-cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCC---CcchHH---hhhh
Q 016366 271 GVEHVGGNMFE-SVPEG-DAILMK-WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP---EVSSAA---RETS 341 (390)
Q Consensus 271 rv~~~~gd~~~-~~p~~-D~i~~~-~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~---~~~~~~---~~~~ 341 (390)
+++++++|+.+ +.+.. |+|++. .++|++++++..++|++++++|+|||+|++.....+... ...... ....
T Consensus 134 ~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 213 (299)
T 3g2m_A 134 RCTLVQGDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGR 213 (299)
T ss_dssp TEEEEECBTTBCCCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC----------
T ss_pred ceEEEeCchhcCCcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCc
Confidence 79999999998 66554 988865 778888877788999999999999999998776543210 000000 0000
Q ss_pred hh-------------hhhhhh----------hcCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 342 LL-------------DVLLMT----------RDGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 342 ~~-------------d~~~~~----------~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
.. .+.+.. .....+.++.++|.++|+++||+++++.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 214 RYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp ---CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred EEEEEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 00 000000 0001124699999999999999999998876
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=139.72 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=107.8
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----------CCceEEECCCCC-CC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFE-SV 283 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----------~rv~~~~gd~~~-~~ 283 (390)
.+.+.+. ..+..+|||||||+|.++..++++.|..+++++|+ +.+++.+++. ++++++.+|+.. +.
T Consensus 20 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 98 (219)
T 3jwg_A 20 TVVAVLK-SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK 98 (219)
T ss_dssp HHHHHHH-HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG
T ss_pred HHHHHHh-hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc
Confidence 3444444 34568999999999999999999999899999998 8888887753 289999999966 44
Q ss_pred CC--CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHH
Q 016366 284 PE--GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKE 361 (390)
Q Consensus 284 p~--~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e 361 (390)
+. .|+|++..++|++++++..++|+++++.|+|||.+++........... ......+. .......++.++
T Consensus 99 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~ 170 (219)
T 3jwg_A 99 RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYG-------NLFEGNLR-HRDHRFEWTRKE 170 (219)
T ss_dssp GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCC-------CT-----G-GGCCTTSBCHHH
T ss_pred ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhc-------ccCccccc-ccCceeeecHHH
Confidence 33 399999999999999888899999999999999666544321110000 00000001 111234468889
Q ss_pred HH----HHHHHCCCCeeEE
Q 016366 362 YT----ELAIAAGFKGINF 376 (390)
Q Consensus 362 ~~----~ll~~aGf~~~~~ 376 (390)
++ ++++++||++...
T Consensus 171 l~~~~~~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 171 FQTWAVKVAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHCCcEEEEE
Confidence 88 8889999976443
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-16 Score=139.45 Aligned_cols=150 Identities=12% Similarity=0.105 Sum_probs=107.3
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----------CCceEEECCCCC-CC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFE-SV 283 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----------~rv~~~~gd~~~-~~ 283 (390)
.+.+.++ ..+..+|||||||+|.++..+++++|..+++++|+ +.+++.+++. ++++++++|+.. +.
T Consensus 20 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 98 (217)
T 3jwh_A 20 GVVAALK-QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK 98 (217)
T ss_dssp HHHHHHH-HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG
T ss_pred HHHHHHH-hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc
Confidence 3444444 45668999999999999999999998889999998 8888877653 279999999865 44
Q ss_pred CC-C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHH
Q 016366 284 PE-G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKE 361 (390)
Q Consensus 284 p~-~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e 361 (390)
+. . |+|++..++|++++++..++|+++++.|+|||.+++....... ..+ ..+....+........++.++
T Consensus 99 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~ 170 (217)
T 3jwh_A 99 RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYN-------VKF-ANLPAGKLRHKDHRFEWTRSQ 170 (217)
T ss_dssp GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHH-------HHT-C-----------CCSCBCHHH
T ss_pred cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccc-------hhh-cccccccccccccccccCHHH
Confidence 32 3 9999999999999988889999999999999977665442100 000 000000011111234468999
Q ss_pred HH----HHHHHCCCCeeE
Q 016366 362 YT----ELAIAAGFKGIN 375 (390)
Q Consensus 362 ~~----~ll~~aGf~~~~ 375 (390)
+. ++++++||++..
T Consensus 171 l~~~~~~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 171 FQNWANKITERFAYNVQF 188 (217)
T ss_dssp HHHHHHHHHHHSSEEEEE
T ss_pred HHHHHHHHHHHcCceEEE
Confidence 98 889999998643
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-16 Score=151.96 Aligned_cols=144 Identities=17% Similarity=0.283 Sum_probs=113.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC--------------CCceEEECCCCC-------C
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFE-------S 282 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~--------------~rv~~~~gd~~~-------~ 282 (390)
.+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.++++ ++++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 456899999999999999999986 7889999998 8888887754 689999999987 4
Q ss_pred CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHH
Q 016366 283 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKK 360 (390)
Q Consensus 283 ~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~ 360 (390)
++.+ |+|++..++|++++.. .+|++++++|+|||++++.+...+..... .. ..+...... ..+..++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~-----~~~~~~~~~-~~~~~~~~~ 232 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNKL--ALFKEIHRVLRDGGELYFSDVYADRRLSE-AA-----QQDPILYGE-CLGGALYLE 232 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEESSCCCH-HH-----HHCHHHHHT-TCTTCCBHH
T ss_pred CCCCCEEEEEEccchhcCCCHH--HHHHHHHHHcCCCCEEEEEEeccccccCH-hH-----hhhHHHhhc-ccccCCCHH
Confidence 5543 9999999999998865 89999999999999999998775542111 11 111111221 244567899
Q ss_pred HHHHHHHHCCCCeeEEEe
Q 016366 361 EYTELAIAAGFKGINFAS 378 (390)
Q Consensus 361 e~~~ll~~aGf~~~~~~~ 378 (390)
+|.++|+++||+++++..
T Consensus 233 ~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 233 DFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHCCCceEEEEe
Confidence 999999999999887654
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=140.17 Aligned_cols=139 Identities=14% Similarity=0.088 Sum_probs=110.2
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCC-cEEEeccccccCChh
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG-DAILMKWILHCWDDD 301 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d~ 301 (390)
+.+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++..+++++.+|+.+ +.+.. |+|++.+++|+++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 446789999999999999999987 458899998 8888888876678999999987 52233 999999999999988
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCC-CCeeEEEecC
Q 016366 302 HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG-FKGINFASCV 380 (390)
Q Consensus 302 ~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aG-f~~~~~~~~~ 380 (390)
+...+|++++++|+|||++++........... .. ......++.++|.++|+++| |+++++....
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--------~~-------~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~ 183 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRD--------KL-------ARYYNYPSEEWLRARYAEAGTWASVAVESSE 183 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEEC--------TT-------SCEECCCCHHHHHHHHHHHCCCSEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCccccc--------cc-------chhccCCCHHHHHHHHHhCCCcEEEEEEecc
Confidence 88899999999999999999876543321100 00 00123468999999999999 9999887553
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-16 Score=142.44 Aligned_cols=162 Identities=10% Similarity=0.071 Sum_probs=115.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hH------HHhhCCCC-------CCceEEECC-C
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH------VVQDAPSY-------AGVEHVGGN-M 279 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~------~~~~a~~~-------~rv~~~~gd-~ 279 (390)
..+++.++ ..+..+|||||||+|.++..+++++ |+.+++++|+ +. +++.++++ ++++++.+| +
T Consensus 33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 35566666 6677899999999999999999985 7789999998 43 67766642 579999998 5
Q ss_pred CC---CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhc---
Q 016366 280 FE---SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD--- 351 (390)
Q Consensus 280 ~~---~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~--- 351 (390)
.. +++.+ |+|++..++|++++.. .+++.++++++|||++++.+...+..................+....
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSD 189 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCT
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccc
Confidence 43 33433 9999999999999876 57888888888899999999877554221111000001110111000
Q ss_pred --CCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 352 --GGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 352 --~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
.....++.+++.++++++||+++++..+.
T Consensus 190 ~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~~ 220 (275)
T 3bkx_A 190 VANIRTLITPDTLAQIAHDNTWTYTAGTIVE 220 (275)
T ss_dssp TCSCCCCCCHHHHHHHHHHHTCEEEECCCBC
T ss_pred cccccccCCHHHHHHHHHHCCCeeEEEEEec
Confidence 01246799999999999999998877653
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-16 Score=141.83 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=110.4
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCC-CCCCC--cEE
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAI 289 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~-~~p~~--D~i 289 (390)
.+...++ ..+..+|||||||+|.++..+++... .+++++|+ +.+++.+++. .+++++++|+.+ +++.. |+|
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 3455555 45678999999999999999998743 37888888 7888887754 479999999987 66543 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC--CCCCcchHH--------hhhhhh-----hhhhhhhcCCC
Q 016366 290 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP--EIPEVSSAA--------RETSLL-----DVLLMTRDGGG 354 (390)
Q Consensus 290 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~--~~~~~~~~~--------~~~~~~-----d~~~~~~~~~g 354 (390)
++..++|++++.. .+|++++++|+|||++++.+.... ......+.. .....+ ...........
T Consensus 112 ~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (243)
T 3bkw_A 112 YSSLALHYVEDVA--RLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVK 189 (243)
T ss_dssp EEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCE
T ss_pred EEeccccccchHH--HHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEE
Confidence 9999999998755 899999999999999998764311 000000000 000000 00001001122
Q ss_pred cccCHHHHHHHHHHCCCCeeEEEec
Q 016366 355 RERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 355 ~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
..++.++|.++|+++||+++++...
T Consensus 190 ~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 190 HHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EeccHHHHHHHHHHcCCEeeeeccC
Confidence 3468999999999999999998754
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=143.69 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=112.1
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-CCCceEEECCCCC-CCCCC--cEEE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFE-SVPEG--DAIL 290 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~-~~p~~--D~i~ 290 (390)
..+++.++ ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .++++++.+|+.+ + +.. |+|+
T Consensus 23 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~ 100 (259)
T 2p35_A 23 RDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLY 100 (259)
T ss_dssp HHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEE
Confidence 35566665 56778999999999999999999999899999998 888888876 4789999999987 5 443 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhh-hc-----CCCcccCHHHHHH
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT-RD-----GGGRERTKKEYTE 364 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~-----~~g~~~t~~e~~~ 364 (390)
+..++|++++.. .+|++++++|+|||++++.++.....+ .............+. .. .....++.++|.+
T Consensus 101 ~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (259)
T 2p35_A 101 ANAVFQWVPDHL--AVLSQLMDQLESGGVLAVQMPDNLQEP---THIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFN 175 (259)
T ss_dssp EESCGGGSTTHH--HHHHHHGGGEEEEEEEEEEEECCTTSH---HHHHHHHHHHHSTTGGGC-------CCCCCHHHHHH
T ss_pred EeCchhhCCCHH--HHHHHHHHhcCCCeEEEEEeCCCCCcH---HHHHHHHHhcCcchHHHhccccccccCCCCHHHHHH
Confidence 999999998755 899999999999999999876432211 000000000000000 00 1234578999999
Q ss_pred HHHHCCCCee
Q 016366 365 LAIAAGFKGI 374 (390)
Q Consensus 365 ll~~aGf~~~ 374 (390)
+|+++||++.
T Consensus 176 ~l~~aGf~v~ 185 (259)
T 2p35_A 176 ALSPKSSRVD 185 (259)
T ss_dssp HHGGGEEEEE
T ss_pred HHHhcCCceE
Confidence 9999999743
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.7e-16 Score=140.30 Aligned_cols=132 Identities=17% Similarity=0.209 Sum_probs=107.3
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC-C-cEEEecccccc
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMKWILHC 297 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~-~-D~i~~~~vlh~ 297 (390)
..+|||||||+|.++..+++ +..+++++|+ +.+++.+++. .+++++++|+.+..+. . |+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999999987 4678999998 7888877652 3599999999983343 3 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
+++++..++|++++++|+|||++++.+......... ....++.++|.++|+++||+++++.
T Consensus 145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------------PPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------------SSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------------CCccCCHHHHHHHHHHcCCeEEEEE
Confidence 997778899999999999999999987654332110 1112579999999999999999988
Q ss_pred ecC
Q 016366 378 SCV 380 (390)
Q Consensus 378 ~~~ 380 (390)
..+
T Consensus 206 ~~~ 208 (235)
T 3lcc_A 206 ENP 208 (235)
T ss_dssp ECT
T ss_pred ecC
Confidence 775
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=141.59 Aligned_cols=157 Identities=16% Similarity=0.121 Sum_probs=114.1
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCceEEECCCCC-CCCCC-cEEEec
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAILMK 292 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~-~~p~~-D~i~~~ 292 (390)
.+++.++ ..+..+|||||||+|.++..+++ +..+++++|+ +.+++.+++. ++++++.+|+.+ +++.. |+|++.
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 124 (279)
T 3ccf_A 48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSN 124 (279)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEE
T ss_pred HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEc
Confidence 4555555 56778999999999999999998 6789999998 8888888764 789999999988 55444 999999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhh---hhcCCCcccCHHHHHHHHHHC
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM---TRDGGGRERTKKEYTELAIAA 369 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~g~~~t~~e~~~ll~~a 369 (390)
+++|++++.. .+|++++++|+|||++++........ ................ ........++.++|.++|+++
T Consensus 125 ~~l~~~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 200 (279)
T 3ccf_A 125 AMLHWVKEPE--AAIASIHQALKSGGRFVAEFGGKGNI--KYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQ 200 (279)
T ss_dssp SCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECTTTT--HHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHH
T ss_pred chhhhCcCHH--HHHHHHHHhcCCCcEEEEEecCCcch--HHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHc
Confidence 9999998865 89999999999999999876643221 0111000000000000 000012356899999999999
Q ss_pred CCCeeEEEecC
Q 016366 370 GFKGINFASCV 380 (390)
Q Consensus 370 Gf~~~~~~~~~ 380 (390)
||+++++....
T Consensus 201 Gf~~~~~~~~~ 211 (279)
T 3ccf_A 201 GFDVTYAALFN 211 (279)
T ss_dssp TEEEEEEEEEE
T ss_pred CCEEEEEEEec
Confidence 99998876543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=140.17 Aligned_cols=147 Identities=12% Similarity=0.100 Sum_probs=104.9
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC--cEEEecccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKWIL 295 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~--D~i~~~~vl 295 (390)
..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++.+++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 466789999999999999999987 467888998 7788877643 689999999987 66654 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcC---CCcccCHHHHHHHHHHCCCC
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDG---GGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~g~~~t~~e~~~ll~~aGf~ 372 (390)
|++++.. .+|++++++|+|||++++. ...++ . .........+..+......+ ....++.+++.++|+++||+
T Consensus 115 ~~~~~~~--~~l~~~~~~L~pgG~l~~~-~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 115 HLVPDWP--KVLAEAIRVLKPGGALLEG-WDQAE-A-SPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GGCTTHH--HHHHHHHHHEEEEEEEEEE-EEEEC-C-CHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhcCCHH--HHHHHHHHHCCCCcEEEEE-ecCCC-c-cHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 9998755 8999999999999999987 21111 0 11000001111111111010 12346789999999999999
Q ss_pred eeEEEe
Q 016366 373 GINFAS 378 (390)
Q Consensus 373 ~~~~~~ 378 (390)
++.+..
T Consensus 190 ~~~~~~ 195 (263)
T 2yqz_A 190 PRTREV 195 (263)
T ss_dssp CEEEEE
T ss_pred cceEEE
Confidence 876543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.5e-16 Score=143.55 Aligned_cols=155 Identities=16% Similarity=0.181 Sum_probs=112.5
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-C-CCCC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S-VPEG 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~-~p~~ 286 (390)
.++..++ .++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ++++++.+|+.+ + ++.+
T Consensus 60 ~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 135 (285)
T 4htf_A 60 RVLAEMG--PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET 135 (285)
T ss_dssp HHHHHTC--SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred HHHHhcC--CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence 4555554 23579999999999999999988 568899998 8888887753 679999999987 4 3443
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhh-------hcCCCccc
Q 016366 287 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT-------RDGGGRER 357 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~g~~~ 357 (390)
|+|++.+++|++++.. ++|++++++|+|||++++.+....... ............... .......+
T Consensus 136 ~fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (285)
T 4htf_A 136 PVDLILFHAVLEWVADPR--SVLQTLWSVLRPGGVLSLMFYNAHGLL---MHNMVAGNFDYVQAGMPKKKKRTLSPDYPR 210 (285)
T ss_dssp CEEEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEEBHHHHH---HHHHHTTCHHHHHTTCCCC----CCCSCCB
T ss_pred CceEEEECchhhcccCHH--HHHHHHHHHcCCCeEEEEEEeCCchHH---HHHHHhcCHHHHhhhccccccccCCCCCCC
Confidence 9999999999998875 899999999999999999876532210 000000000000000 00123567
Q ss_pred CHHHHHHHHHHCCCCeeEEEecC
Q 016366 358 TKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 358 t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
+.+++.++|+++||+++++..+.
T Consensus 211 ~~~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 211 DPTQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEES
T ss_pred CHHHHHHHHHHCCCceeeeeeEE
Confidence 89999999999999999887764
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-15 Score=133.99 Aligned_cols=137 Identities=22% Similarity=0.189 Sum_probs=103.7
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCC--cEEEeccccccCChhHH
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHC 303 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~ 303 (390)
..+|||||||+|.++..+++. +++|+ +.+++.+++. +++++.+|+.+ +++.+ |+|++.+++|++++..
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~- 119 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPE- 119 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHH-
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCHH-
Confidence 789999999999999998765 77887 8888888776 79999999987 66543 9999999999998765
Q ss_pred HHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 304 LRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 304 ~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
.+|++++++|+|||++++.+..... .......... ...........++.++|.++|+++||+++++...
T Consensus 120 -~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 120 -RALKEAYRILKKGGYLIVGIVDRES-----FLGREYEKNK-EKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp -HHHHHHHHHEEEEEEEEEEEECSSS-----HHHHHHHHTT-TC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred -HHHHHHHHHcCCCcEEEEEEeCCcc-----HHHHHHHHHh-cCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 8999999999999999998764322 1111000000 0000011345579999999999999999988655
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.5e-16 Score=141.39 Aligned_cols=159 Identities=16% Similarity=0.146 Sum_probs=110.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCC-CCCCC--cEE
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAI 289 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~-~~p~~--D~i 289 (390)
.+.+.++ ..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |+|
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE
Confidence 4445444 446789999999999999999998764 8899998 8888887753 689999999987 66543 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC--C---------CCcchHHhhhhhhh-----hhhhhhcCC
Q 016366 290 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE--I---------PEVSSAARETSLLD-----VLLMTRDGG 353 (390)
Q Consensus 290 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~--~---------~~~~~~~~~~~~~d-----~~~~~~~~~ 353 (390)
++..++|++++.. ++|++++++|+|||++++....... . ............++ .........
T Consensus 113 ~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (253)
T 3g5l_A 113 LSSLALHYIASFD--DICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQ 190 (253)
T ss_dssp EEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEE
T ss_pred EEchhhhhhhhHH--HHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCc
Confidence 9999999997754 8999999999999999987443110 0 00000000000000 000000001
Q ss_pred CcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 354 GRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 354 g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
...+|.++|.++|+++||+++++...
T Consensus 191 ~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 191 KYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred cEecCHHHHHHHHHHcCCeeeeeecC
Confidence 12349999999999999999998754
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-15 Score=135.75 Aligned_cols=149 Identities=19% Similarity=0.166 Sum_probs=109.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----------CCceEEECCCCC-CCCCC--cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFE-SVPEG--DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----------~rv~~~~gd~~~-~~p~~--D~i~ 290 (390)
++..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. .+++++.+|+.+ +++.. |+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 46789999999999999999998 568899998 7787776641 257999999988 66543 9999
Q ss_pred eccccccCChh-HHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhc--------C------CCc
Q 016366 291 MKWILHCWDDD-HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD--------G------GGR 355 (390)
Q Consensus 291 ~~~vlh~~~d~-~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~--------~------~g~ 355 (390)
+..++|++++. ...++|++++++|+|||++++.+........ ................ . ...
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLK---LYRKRYLHDFPITKEEGSFLARDPETGETEFIAH 183 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSH---HHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHH---HHHHHhhhhccchhhhcceEecccccCCcceeeE
Confidence 99999999764 4668999999999999999999876543211 1000111111110000 0 013
Q ss_pred ccCHHHHHHHHHHCCCCeeEEEec
Q 016366 356 ERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 356 ~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
.++.++|.++|+++||+++++...
T Consensus 184 ~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 184 HFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp CBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eCCHHHHHHHHHHcCCEEEEEEec
Confidence 579999999999999999988643
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=137.08 Aligned_cols=162 Identities=12% Similarity=0.088 Sum_probs=111.3
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC-cEEEecc-cccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAILMKW-ILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-D~i~~~~-vlh~ 297 (390)
+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .+++++++|+.+ +.+.. |+|++.. ++||
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCC--CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 56799999999999999999884 57899998 8888887753 279999999987 56544 9999998 9999
Q ss_pred CC-hhHHHHHHHHHHHhCCCCcEEEEEecccC-------CCCCcchHH-----hh------hhhhhhhhhhhcC------
Q 016366 298 WD-DDHCLRILKNCYKAVPGNGKVIVMNSIVP-------EIPEVSSAA-----RE------TSLLDVLLMTRDG------ 352 (390)
Q Consensus 298 ~~-d~~~~~~L~~~~~~L~pgG~lli~e~~~~-------~~~~~~~~~-----~~------~~~~d~~~~~~~~------ 352 (390)
++ +++..++|++++++|+|||++++...... ......... +. .....+.++....
T Consensus 115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRF 194 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCccccc
Confidence 94 35677999999999999999987433210 000000000 00 0000000000000
Q ss_pred ----CCcccCHHHHHHHHHHCCCCeeEEEec--------CCceeEEEEeC
Q 016366 353 ----GGRERTKKEYTELAIAAGFKGINFASC--------VCNLYIMEFFK 390 (390)
Q Consensus 353 ----~g~~~t~~e~~~ll~~aGf~~~~~~~~--------~~~~~vi~~~k 390 (390)
..+.++.++|.++|+++||+++++... .+...++.++|
T Consensus 195 ~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK 244 (246)
T 1y8c_A 195 DEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL 244 (246)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred EEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence 124569999999999999999998754 13444666664
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.7e-15 Score=142.67 Aligned_cols=219 Identities=10% Similarity=0.033 Sum_probs=136.9
Q ss_pred ChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccccCCCCCChHHHHhc
Q 016366 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMAL 127 (390)
Q Consensus 48 glfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~ 127 (390)
++|..| . +|.|++|||+++++ +++.+++||+.|.+.|+++. .++ |++|+.+..+.......+..+.+..
T Consensus 47 ~ll~~L-~-~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~----~~~-~~lt~~~~~~l~~~~~~~~~~~~~~ 115 (373)
T 2qm3_A 47 NVLSAV-L-ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTF----EDG-VKLTEKGEELVAEYGIGKRYDFTCP 115 (373)
T ss_dssp HHHHHH-H-HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEC----SSS-SEECHHHHHHHHHHTCCCCCC----
T ss_pred HHHHHh-c-CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEE----CCC-EEECHHHHHHHHhcCccccccccch
Confidence 778888 4 59999999999999 99999999999999999985 334 9999876655443211111111000
Q ss_pred -ccC-hhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCCchhhhhcCCChhhhcccCchHHHHHHH
Q 016366 128 -PLD-KVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHE 205 (390)
Q Consensus 128 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 205 (390)
..+ ...+..| ...+..+.+.++....+. ..++.....++ .....
T Consensus 116 ~~~g~g~~~~~~--------------------------~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~--~~~~~ 161 (373)
T 2qm3_A 116 HCQGKTVDLQAF--------------------------ADLLEQFREIVKDRPEPL------HEFDQAYVTPE--TTVAR 161 (373)
T ss_dssp --------CGGG--------------------------HHHHHHHHHHHTTCCCCC------GGGTCCCBCHH--HHHHH
T ss_pred hhcCCCcchhhh--------------------------HHHHHHHHHHHhcCCccc------hhcCCeecCHH--HHHHH
Confidence 000 0000000 001113334444322110 01110000111 11110
Q ss_pred HHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECC
Q 016366 206 AMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGN 278 (390)
Q Consensus 206 ~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd 278 (390)
.. .... .. ..++.+|||+| |+|.++..+++..|+.+++++|+ +.+++.++++ ++|+++.+|
T Consensus 162 ~l---------~~~~-~~-~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D 229 (373)
T 2qm3_A 162 VI---------LMHT-RG-DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFD 229 (373)
T ss_dssp HH---------HHHH-TT-CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred HH---------HHhh-cC-CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEECh
Confidence 00 0011 11 23468999999 99999999999988889999999 8899888753 379999999
Q ss_pred CCCCCCC----C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 279 MFESVPE----G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 279 ~~~~~p~----~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+.+++|. . |+|+++..++... ...+|++++++|+|||++++.+..
T Consensus 230 ~~~~l~~~~~~~fD~Vi~~~p~~~~~---~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 230 LRKPLPDYALHKFDTFITDPPETLEA---IRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp TTSCCCTTTSSCBSEEEECCCSSHHH---HHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred hhhhchhhccCCccEEEECCCCchHH---HHHHHHHHHHHcccCCeEEEEEEe
Confidence 9885542 3 9999988776542 468999999999999976555544
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-15 Score=131.30 Aligned_cols=132 Identities=18% Similarity=0.238 Sum_probs=108.3
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCceEEECCCCC-CCCCC--cEEEe
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILM 291 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~-~~p~~--D~i~~ 291 (390)
.++..+ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.. |+|++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 455554 356789999999999999999987 468888888 7888887763 679999999988 66643 99999
Q ss_pred c-cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCC
Q 016366 292 K-WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370 (390)
Q Consensus 292 ~-~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aG 370 (390)
. .++|+++++....+|+++++.|+|||++++..... ..++.+++.++++++|
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~---------------------------~~~~~~~~~~~l~~~G 166 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG---------------------------RGWVFGDFLEVAERVG 166 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT---------------------------SSCCHHHHHHHHHHHT
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC---------------------------CCcCHHHHHHHHHHcC
Confidence 8 89999988888899999999999999999864321 1257899999999999
Q ss_pred CCeeEEEec
Q 016366 371 FKGINFASC 379 (390)
Q Consensus 371 f~~~~~~~~ 379 (390)
|+++++...
T Consensus 167 f~~~~~~~~ 175 (195)
T 3cgg_A 167 LELENAFES 175 (195)
T ss_dssp EEEEEEESS
T ss_pred CEEeeeecc
Confidence 999888654
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-16 Score=145.99 Aligned_cols=146 Identities=14% Similarity=0.247 Sum_probs=105.4
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----------------------------------
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------------------------------- 269 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----------------------------------- 269 (390)
....+|||||||+|.++..++++++..+++++|+ +.+++.|++.
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 3568999999999999999999999999999998 7788877642
Q ss_pred -----------------------------CCceEEECCCCCCC------CC-C-cEEEeccccccC----ChhHHHHHHH
Q 016366 270 -----------------------------AGVEHVGGNMFESV------PE-G-DAILMKWILHCW----DDDHCLRILK 308 (390)
Q Consensus 270 -----------------------------~rv~~~~gd~~~~~------p~-~-D~i~~~~vlh~~----~d~~~~~~L~ 308 (390)
.+|+|+++|+.... +. . |+|++.++++++ +++...++|+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 47999999998632 33 3 999999999775 6777889999
Q ss_pred HHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHH--CCCCeeEEEec
Q 016366 309 NCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA--AGFKGINFASC 379 (390)
Q Consensus 309 ~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~--aGf~~~~~~~~ 379 (390)
+++++|+|||+|++........ ......... ....+ ......++++.++|.+ +||+.+++...
T Consensus 205 ~~~~~LkpGG~lil~~~~~~~y------~~~~~~~~~-~~~~~-~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 205 RIYRHLRPGGILVLEPQPWSSY------GKRKTLTET-IYKNY-YRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHEEEEEEEEEECCCHHHH------HTTTTSCHH-HHHHH-HHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHhCCCcEEEEecCCchhh------hhhhcccHH-HHhhh-hcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 9999999999988753321110 000000000 00001 1223347899999999 99998887655
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=136.63 Aligned_cols=153 Identities=17% Similarity=0.103 Sum_probs=110.5
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCC-----CCCC--cE
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES-----VPEG--DA 288 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~-----~p~~--D~ 288 (390)
.++..+. ...+.+|||||||+|.++..+++. ..+++++|+ +.+++.+++..++++..+|+.+. .+.. |+
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 4555555 445689999999999999999988 568899998 88999998888899999887641 2222 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhc-----CCCcccCHHHHH
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD-----GGGRERTKKEYT 363 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~g~~~t~~e~~ 363 (390)
|++.+++| .++.. .+|++++++|+|||++++.++........... ..+......... .....++.++|.
T Consensus 120 v~~~~~l~-~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (227)
T 3e8s_A 120 ICANFALL-HQDII--ELLSAMRTLLVPGGALVIQTLHPWSVADGDYQ---DGWREESFAGFAGDWQPMPWYFRTLASWL 193 (227)
T ss_dssp EEEESCCC-SSCCH--HHHHHHHHTEEEEEEEEEEECCTTTTCTTCCS---CEEEEECCTTSSSCCCCEEEEECCHHHHH
T ss_pred EEECchhh-hhhHH--HHHHHHHHHhCCCeEEEEEecCccccCccccc---cccchhhhhccccCcccceEEEecHHHHH
Confidence 99999999 66655 89999999999999999988764432211000 000000000000 011346999999
Q ss_pred HHHHHCCCCeeEEEe
Q 016366 364 ELAIAAGFKGINFAS 378 (390)
Q Consensus 364 ~ll~~aGf~~~~~~~ 378 (390)
++|+++||+++++..
T Consensus 194 ~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 194 NALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHTTEEEEEEEC
T ss_pred HHHHHcCCeEEEEec
Confidence 999999999999875
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-15 Score=135.04 Aligned_cols=169 Identities=18% Similarity=0.225 Sum_probs=113.7
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC-c
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-D 287 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-D 287 (390)
..+.+.++ ...+|||||||+|.++..+++. .+++++|+ +.+++.+++. .+++++++|+.+ +.+.. |
T Consensus 25 ~~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD 98 (243)
T 3d2l_A 25 AWVLEQVE---PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVD 98 (243)
T ss_dssp HHHHHHSC---TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEE
T ss_pred HHHHHHcC---CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcC
Confidence 34444433 4589999999999999999887 68899998 8888887753 579999999987 56544 9
Q ss_pred EEEecc-ccccC-ChhHHHHHHHHHHHhCCCCcEEEEEecccC-------CCC-----Cc---chHH-----hhhhhhhh
Q 016366 288 AILMKW-ILHCW-DDDHCLRILKNCYKAVPGNGKVIVMNSIVP-------EIP-----EV---SSAA-----RETSLLDV 345 (390)
Q Consensus 288 ~i~~~~-vlh~~-~d~~~~~~L~~~~~~L~pgG~lli~e~~~~-------~~~-----~~---~~~~-----~~~~~~d~ 345 (390)
+|++.. ++|++ +.++..++|++++++|+|||++++...... ... .. .+.. ......++
T Consensus 99 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (243)
T 3d2l_A 99 AITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHEL 178 (243)
T ss_dssp EEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEE
T ss_pred EEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEE
Confidence 999986 99998 456677999999999999999887432110 000 00 0000 00000001
Q ss_pred hhhhhcCCC-----------cccCHHHHHHHHHHCCCCeeEEEecC--------CceeEEEEeC
Q 016366 346 LLMTRDGGG-----------RERTKKEYTELAIAAGFKGINFASCV--------CNLYIMEFFK 390 (390)
Q Consensus 346 ~~~~~~~~g-----------~~~t~~e~~~ll~~aGf~~~~~~~~~--------~~~~vi~~~k 390 (390)
.++....++ +.++.++++++|+++||+++++.... +...++.++|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K 242 (243)
T 3d2l_A 179 TFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEK 242 (243)
T ss_dssp EEEEECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEE
T ss_pred EEEEEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEe
Confidence 111000111 35799999999999999999987541 3445666665
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-15 Score=137.54 Aligned_cols=148 Identities=12% Similarity=0.076 Sum_probs=107.9
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCC-CCCC-------CcEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPE-------GDAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~-~~p~-------~D~i~~~ 292 (390)
..+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++. .+++++++|+.+ +.+. .|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45678999999999999999999988 6777887 7888887652 589999999987 3322 4899999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhh-----hhhh-hhhhcCCCcccCHHHHHHHH
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL-----LDVL-LMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~-----~d~~-~~~~~~~g~~~t~~e~~~ll 366 (390)
.++|++++++..++|++++++|+|||++++.+...++.. ........ ..+. ..........++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCID---FFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHH---HHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccH---HHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence 999999977778999999999999999999998654310 00000000 0000 00000112236899999999
Q ss_pred HHCCCCeeEEEec
Q 016366 367 IAAGFKGINFASC 379 (390)
Q Consensus 367 ~~aGf~~~~~~~~ 379 (390)
+||+++.....
T Consensus 209 --aGf~~~~~~~~ 219 (245)
T 3ggd_A 209 --PDFEILSQGEG 219 (245)
T ss_dssp --TTEEEEEEECC
T ss_pred --CCCEEEecccc
Confidence 99999886544
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-15 Score=137.29 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=85.1
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCC--cEEEeccccccCChhH
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH 302 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~ 302 (390)
...+|||||||+|.++..+++.+. +++++|+ +.|++.+++.++|+++++|+++ +++.+ |+|++..++|+++. +
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~-~ 115 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL-D 115 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH-H
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH-H
Confidence 457999999999999999998874 6788887 8899999999999999999998 78765 99999999998763 3
Q ss_pred HHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 303 CLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 303 ~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
+++++++|+|||||+|++.....+
T Consensus 116 --~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 116 --RFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp --HHHHHHHHHEEEEEEEEEEEECCC
T ss_pred --HHHHHHHHHcCCCCEEEEEECCCC
Confidence 789999999999999999876543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.3e-15 Score=130.94 Aligned_cols=133 Identities=16% Similarity=0.166 Sum_probs=103.3
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCC-CCCCC--cEEEe
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILM 291 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~~ 291 (390)
...+++.+....+..+|||||||+|.++..++ .+++++|+... +++++.+|+.+ +++.+ |+|++
T Consensus 55 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~ 121 (215)
T 2zfu_A 55 VDRIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVF 121 (215)
T ss_dssp HHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred HHHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEE
Confidence 33455555434566899999999999998873 56888887322 68899999988 66654 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCC
Q 016366 292 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGF 371 (390)
Q Consensus 292 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf 371 (390)
..++|+ ++. ..+|++++++|+|||++++.+.... ..+.++|.++++++||
T Consensus 122 ~~~l~~-~~~--~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~l~~~Gf 171 (215)
T 2zfu_A 122 CLSLMG-TNI--RDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRAVTKLGF 171 (215)
T ss_dssp ESCCCS-SCH--HHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHHHHHTTE
T ss_pred ehhccc-cCH--HHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHHHHHCCC
Confidence 999984 544 4899999999999999999875310 1278999999999999
Q ss_pred CeeEEEecCCceeEEEEeC
Q 016366 372 KGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 372 ~~~~~~~~~~~~~vi~~~k 390 (390)
++++.........++.++|
T Consensus 172 ~~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 172 KIVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp EEEEEECCSTTCEEEEEEE
T ss_pred EEEEEecCCCeEEEEEEEe
Confidence 9998877777777777664
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.4e-15 Score=129.33 Aligned_cols=142 Identities=11% Similarity=0.124 Sum_probs=110.0
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC-c
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG-D 287 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~-D 287 (390)
.+++.++ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 3444455 445679999999999999999987 568999998 7888877652 479999999987 55444 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHH
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 367 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~ 367 (390)
+|++..++|++++++...+|++++++|+|||++++.+.......... ......++.++++++|+
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~ 163 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRYYE 163 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCSCCBCTTHHHHHTT
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCCCccCHHHHHHHhc
Confidence 99999999999977778999999999999999998887654421100 01233568899999997
Q ss_pred HCCCCeeEEEec
Q 016366 368 AAGFKGINFASC 379 (390)
Q Consensus 368 ~aGf~~~~~~~~ 379 (390)
+ |++++....
T Consensus 164 ~--f~~~~~~~~ 173 (199)
T 2xvm_A 164 G--WERVKYNED 173 (199)
T ss_dssp T--SEEEEEECC
T ss_pred C--CeEEEeccc
Confidence 6 998887544
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-15 Score=134.85 Aligned_cols=152 Identities=16% Similarity=0.188 Sum_probs=110.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC---CCCCC--cEE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPEG--DAI 289 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~---~~p~~--D~i 289 (390)
..+++.++ .+..+|||||||+|.++..+++. + .+++++|+ +.+++.+++.. .+++.+|+.+ +++.+ |+|
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEE
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEE
Confidence 34555443 46689999999999999999988 4 78999998 78888877643 4789999875 34433 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhh-hhhh-----hhcCCCcccCHHHHH
Q 016366 290 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLD-VLLM-----TRDGGGRERTKKEYT 363 (390)
Q Consensus 290 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d-~~~~-----~~~~~g~~~t~~e~~ 363 (390)
++.+++|++++.. .+|+++++.|+|||++++..+..... ........ .... ........++.++|.
T Consensus 98 ~~~~~l~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (230)
T 3cc8_A 98 IFGDVLEHLFDPW--AVIEKVKPYIKQNGVILASIPNVSHI------SVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEML 169 (230)
T ss_dssp EEESCGGGSSCHH--HHHHHTGGGEEEEEEEEEEEECTTSH------HHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHH
T ss_pred EECChhhhcCCHH--HHHHHHHHHcCCCCEEEEEeCCcchH------HHHHHHhcCCceeccCCCCCcceEEEecHHHHH
Confidence 9999999998875 89999999999999999987653221 00000000 0000 000122457999999
Q ss_pred HHHHHCCCCeeEEEecC
Q 016366 364 ELAIAAGFKGINFASCV 380 (390)
Q Consensus 364 ~ll~~aGf~~~~~~~~~ 380 (390)
++++++||+++++....
T Consensus 170 ~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 170 RMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHTTEEEEEEEEEE
T ss_pred HHHHHcCCeEEEEEecc
Confidence 99999999999887654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.5e-15 Score=138.54 Aligned_cols=140 Identities=16% Similarity=0.102 Sum_probs=96.8
Q ss_pred CCcceEEEEcCCccHHHH----HHHhhCCCCeE--EEecc-hHHHhhCCCC-------CCceE--EECCCCC-C------
Q 016366 226 QNVERLVDVGGGFGVTLS----MITSKYPQIKA--VNFDL-PHVVQDAPSY-------AGVEH--VGGNMFE-S------ 282 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~----~l~~~~p~~~~--~~~Dl-~~~~~~a~~~-------~rv~~--~~gd~~~-~------ 282 (390)
.+..+|||||||+|.++. .++.++|++++ +++|. +.|++.+++. +++++ ..++..+ +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 346799999999997654 45566788854 99998 7888876642 34444 4555543 2
Q ss_pred CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcC---CCccc
Q 016366 283 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDG---GGRER 357 (390)
Q Consensus 283 ~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~g~~~ 357 (390)
++.+ |+|++.+++||++|.. ++|++++++|||||++++.+...+. .... .+... ....+ ....+
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~-----~~~~--~~~~~--~~~~~~~~~~~~~ 199 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGTNAKMLIIVVSGSS-----GWDK--LWKKY--GSRFPQDDLCQYI 199 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEECTTS-----HHHH--HHHHH--GGGSCCCTTCCCC
T ss_pred cCCCceeEEEEeeeeeecCCHH--HHHHHHHHHcCCCcEEEEEEecCCc-----cHHH--HHHHH--HHhccCCCcccCC
Confidence 2333 9999999999999876 8899999999999999998654211 1111 01110 00011 12457
Q ss_pred CHHHHHHHHHHCCCCeeEE
Q 016366 358 TKKEYTELAIAAGFKGINF 376 (390)
Q Consensus 358 t~~e~~~ll~~aGf~~~~~ 376 (390)
+.++|.++|+++||+++..
T Consensus 200 ~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 200 TSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp CHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHCCCceEEE
Confidence 8999999999999998764
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-15 Score=133.74 Aligned_cols=152 Identities=7% Similarity=-0.045 Sum_probs=107.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC--cEEEecccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKWIL 295 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~--D~i~~~~vl 295 (390)
..+..+|||+|||+|..+..++.. ++.+++++|. +.+++.+++. .+++++++|+.+ +++.+ |+|++.+++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 446789999999999985555444 4678999998 7888877653 679999999988 66543 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
||++.++..++|++++++|+|||++++.+...++.............+.............++.+++.++|++.||...+
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~ 179 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE 179 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence 99987778899999999999999999988875543211000000000000000000012456899999999999987665
Q ss_pred EE
Q 016366 376 FA 377 (390)
Q Consensus 376 ~~ 377 (390)
..
T Consensus 180 ~~ 181 (209)
T 2p8j_A 180 DR 181 (209)
T ss_dssp EE
T ss_pred ee
Confidence 43
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=135.06 Aligned_cols=160 Identities=17% Similarity=0.195 Sum_probs=110.3
Q ss_pred HHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCC--------CCC
Q 016366 202 TYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS--------YAG 271 (390)
Q Consensus 202 ~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~--------~~r 271 (390)
.|.+....+.......+.... ..+..+|||||||+|.++..+++++ +..+++++|+ +.+++.+++ .++
T Consensus 13 ~y~~~rp~y~~~~~~~l~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~ 90 (299)
T 3g5t_A 13 RYSSSRPSYPSDFYKMIDEYH--DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKN 90 (299)
T ss_dssp HHHHHSCCCCHHHHHHHHHHC--CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTT
T ss_pred HHhhcCCCCCHHHHHHHHHHh--cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCc
Confidence 344444444444444444432 2467899999999999999999987 8899999998 888888765 368
Q ss_pred ceEEECCCCC-CCCC------C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc---cCCCCCcchHHhh
Q 016366 272 VEHVGGNMFE-SVPE------G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI---VPEIPEVSSAARE 339 (390)
Q Consensus 272 v~~~~gd~~~-~~p~------~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~---~~~~~~~~~~~~~ 339 (390)
++++++|+.+ +++. + |+|++..++|++ +. .++|+++++.|+|||++++.+.. ..+.+..
T Consensus 91 v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~------ 161 (299)
T 3g5t_A 91 VSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-DF--EKFQRSAYANLRKDGTIAIWGYADPIFPDYPEF------ 161 (299)
T ss_dssp EEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-CH--HHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGG------
T ss_pred eEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-CH--HHHHHHHHHhcCCCcEEEEEecCCccccCcHHH------
Confidence 9999999988 5544 3 999999999999 54 48999999999999999995443 3222111
Q ss_pred hhhhhhhhhhh-cCCCc--ccCHHHHHHHHHHCCCC
Q 016366 340 TSLLDVLLMTR-DGGGR--ERTKKEYTELAIAAGFK 372 (390)
Q Consensus 340 ~~~~d~~~~~~-~~~g~--~~t~~e~~~ll~~aGf~ 372 (390)
...+.-..... ..+.. .+..+.++++++++||.
T Consensus 162 ~~~~~~~~~~~~~~~~~w~~p~~~~~~~~l~~~gfp 197 (299)
T 3g5t_A 162 DDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHLD 197 (299)
T ss_dssp TTHHHHHHHCTTTTGGGSCTTHHHHHHTTTTTCCCC
T ss_pred HHHHHHhccCcccccchhhchhhHHHHHhhhccCCC
Confidence 11111111000 00111 14567789999999994
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=131.16 Aligned_cols=133 Identities=10% Similarity=-0.015 Sum_probs=103.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-----------------------CCCceEEECCCCC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------------------YAGVEHVGGNMFE 281 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------------------~~rv~~~~gd~~~ 281 (390)
.+..+|||+|||+|..+..+++. +.+++++|+ +.+++.|++ ..+|+++++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 46689999999999999999987 458999998 888887642 1579999999998
Q ss_pred -CCC--CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCccc
Q 016366 282 -SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRER 357 (390)
Q Consensus 282 -~~p--~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~ 357 (390)
+.+ .. |+|++..++|++++++..+++++++++|+|||+++++....+.... .......
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~------------------~g~~~~~ 206 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH------------------AGPPFYV 206 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC------------------CCSSCCC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC------------------CCCCCCC
Confidence 544 33 9999999999999888889999999999999999876655332100 0011125
Q ss_pred CHHHHHHHHHHCCCCeeEEEec
Q 016366 358 TKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 358 t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
+.+++.+++++ +|+++.....
T Consensus 207 ~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 207 PSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CHHHHHHHHTT-TEEEEEEEEE
T ss_pred CHHHHHHHhhC-CeEEEEEecc
Confidence 79999999987 5998877543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-15 Score=139.40 Aligned_cols=108 Identities=18% Similarity=0.141 Sum_probs=88.1
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----------CCceEEECCCCC-C
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFE-S 282 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----------~rv~~~~gd~~~-~ 282 (390)
...+...++ ..+..+|||||||+|.++..++++.. +++++|+ +.+++.+++. .++.+..+|+.+ +
T Consensus 46 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~ 122 (293)
T 3thr_A 46 KAWLLGLLR-QHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 122 (293)
T ss_dssp HHHHHHHHH-HTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred HHHHHHHhc-ccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence 344555555 45678999999999999999999854 8889998 7888877541 578899999887 5
Q ss_pred ---CCCC--cEEEec-cccccCCh-----hHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 283 ---VPEG--DAILMK-WILHCWDD-----DHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 283 ---~p~~--D~i~~~-~vlh~~~d-----~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
++.+ |+|++. +++||+++ ++..++|++++++|+|||++++..+
T Consensus 123 ~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 123 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp HHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4543 999998 99999998 6677999999999999999998764
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=125.18 Aligned_cols=151 Identities=19% Similarity=0.273 Sum_probs=105.7
Q ss_pred HHHHHhhccCCcceEEEEcCCc--cHHHHHHH-hhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCC---C
Q 016366 217 RILEHYEGFQNVERLVDVGGGF--GVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---V 283 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~--G~~~~~l~-~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~---~ 283 (390)
..+..+..-.+..+|||||||+ +.++.+++ +..|+.+++++|. |.|++++++. .+++++++|+.++ +
T Consensus 68 rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l 147 (277)
T 3giw_A 68 RAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASIL 147 (277)
T ss_dssp HHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHH
T ss_pred HHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhh
Confidence 3344443123567999999997 44445554 4689999999998 9999999862 3699999999873 1
Q ss_pred --C---C------CcEEEeccccccCChhH-HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhc
Q 016366 284 --P---E------GDAILMKWILHCWDDDH-CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD 351 (390)
Q Consensus 284 --p---~------~D~i~~~~vlh~~~d~~-~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 351 (390)
| . ..+|+++.+||++++++ ...+|++++++|+|||+|++.+...+..+ ... ....+..... .
T Consensus 148 ~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p--~~~---~~~~~~~~~~-g 221 (277)
T 3giw_A 148 DAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP--QEV---GRVAREYAAR-N 221 (277)
T ss_dssp TCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH--HHH---HHHHHHHHHT-T
T ss_pred cccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH--HHH---HHHHHHHHhc-C
Confidence 1 1 13789999999999875 46899999999999999999988754321 111 1111211111 1
Q ss_pred CCCcccCHHHHHHHHHHCCCCeeE
Q 016366 352 GGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 352 ~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
.....||.+++.++|. ||.+++
T Consensus 222 ~p~~~rs~~ei~~~f~--Glelve 243 (277)
T 3giw_A 222 MPMRLRTHAEAEEFFE--GLELVE 243 (277)
T ss_dssp CCCCCCCHHHHHHTTT--TSEECT
T ss_pred CCCccCCHHHHHHHhC--CCcccC
Confidence 1245689999999994 998764
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.9e-14 Score=139.69 Aligned_cols=152 Identities=12% Similarity=0.080 Sum_probs=109.6
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC------CCC-
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE------SVP- 284 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~------~~p- 284 (390)
.....+++.++ ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++. .+......+.. +++
T Consensus 94 ~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~ 169 (416)
T 4e2x_A 94 MLARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTE 169 (416)
T ss_dssp HHHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCC
Confidence 34456666666 6677899999999999999999874 48899998 7888888865 34443332221 122
Q ss_pred CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHH
Q 016366 285 EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT 363 (390)
Q Consensus 285 ~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~ 363 (390)
.. |+|++.+++||+++.. .+|++++++|+|||++++..+.... .. ....+.... ......++.++|.
T Consensus 170 ~~fD~I~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~------~~---~~~~~~~~~-~~~~~~~s~~~l~ 237 (416)
T 4e2x_A 170 GPANVIYAANTLCHIPYVQ--SVLEGVDALLAPDGVFVFEDPYLGD------IV---AKTSFDQIF-DEHFFLFSATSVQ 237 (416)
T ss_dssp CCEEEEEEESCGGGCTTHH--HHHHHHHHHEEEEEEEEEEEECHHH------HH---HHTCGGGCS-TTCCEECCHHHHH
T ss_pred CCEEEEEECChHHhcCCHH--HHHHHHHHHcCCCeEEEEEeCChHH------hh---hhcchhhhh-hhhhhcCCHHHHH
Confidence 23 9999999999998765 8999999999999999987654321 00 000011110 1244567999999
Q ss_pred HHHHHCCCCeeEEEecC
Q 016366 364 ELAIAAGFKGINFASCV 380 (390)
Q Consensus 364 ~ll~~aGf~~~~~~~~~ 380 (390)
++++++||+++++...+
T Consensus 238 ~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 238 GMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHTTEEEEEEEEEC
T ss_pred HHHHHcCCEEEEEEEcc
Confidence 99999999999998765
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-14 Score=131.62 Aligned_cols=140 Identities=11% Similarity=0.102 Sum_probs=103.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----C------------------------------
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A------------------------------ 270 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~------------------------------ 270 (390)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. +
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4567999999999999999988766 57888898 7788877542 1
Q ss_pred -Cc-eEEECCCCC-C-CCC---C--cEEEeccccccCChh--HHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhh
Q 016366 271 -GV-EHVGGNMFE-S-VPE---G--DAILMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARE 339 (390)
Q Consensus 271 -rv-~~~~gd~~~-~-~p~---~--D~i~~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~ 339 (390)
++ +++.+|+.+ + .+. + |+|++..++|++++. +...+|++++++|+|||++++.+....+. .
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-----~--- 205 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY-----Y--- 205 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-----E---
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce-----E---
Confidence 17 899999987 2 233 3 999999999954432 56699999999999999999988543210 0
Q ss_pred hhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 340 TSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 340 ~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
...+.. . .....+.+++.++|+++||+++++....
T Consensus 206 -~~~~~~----~-~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 -MIGEQK----F-SSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp -EETTEE----E-ECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred -EcCCcc----c-cccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 000000 0 1234588999999999999999887654
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-14 Score=131.11 Aligned_cols=154 Identities=12% Similarity=0.011 Sum_probs=107.8
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CC-CCC--cEEEecc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SV-PEG--DAILMKW 293 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~-p~~--D~i~~~~ 293 (390)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++++|+.+ ++ +.+ |+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 56789999999999999998876 4568999998 7888877652 368999999988 66 333 9999999
Q ss_pred cccc--CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCC--------CcchHH-------hhh----hhhhhhhhhhc-
Q 016366 294 ILHC--WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP--------EVSSAA-------RET----SLLDVLLMTRD- 351 (390)
Q Consensus 294 vlh~--~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~--------~~~~~~-------~~~----~~~d~~~~~~~- 351 (390)
++|+ .+.++..++|++++++|+|||++++..+....-. ...... ... ....+......
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 221 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN 221 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhc
Confidence 9998 5666778999999999999999998775421100 000000 000 00000000000
Q ss_pred -CCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 352 -GGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 352 -~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
.....++.++++++++++||+++++....
T Consensus 222 ~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 222 NCIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp SEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred CCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 01245689999999999999999887653
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-14 Score=133.75 Aligned_cols=140 Identities=14% Similarity=0.098 Sum_probs=98.9
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----------------------------------
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------------------------- 269 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---------------------------------- 269 (390)
..++.+|||||||+|.++..++...- .+++++|+ +.+++.+++.
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 34567999999999988776665432 26888898 8888866531
Q ss_pred -CCce-EEECCCCCC--CC---C-C-cEEEeccccccC-C-hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHh
Q 016366 270 -AGVE-HVGGNMFES--VP---E-G-DAILMKWILHCW-D-DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR 338 (390)
Q Consensus 270 -~rv~-~~~gd~~~~--~p---~-~-D~i~~~~vlh~~-~-d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~ 338 (390)
.+|+ ++++|+.+. ++ . . |+|++..+||+. + .++..++|++++++|||||+|++.+...... .
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-----~-- 204 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-----Y-- 204 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-----E--
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc-----c--
Confidence 0133 889999872 22 2 2 999999999985 2 2456789999999999999999987643210 0
Q ss_pred hhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 339 ETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 339 ~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
...-. .+ ....++.+++.++|+++||+++++...
T Consensus 205 ---~~g~~---~~-~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 205 ---MVGKR---EF-SCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp ---EETTE---EE-ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ---eeCCe---Ee-eccccCHHHHHHHHHHCCCEEEEEeec
Confidence 00000 00 122458999999999999999988654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-13 Score=116.15 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=97.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCCCC--cEEEeccccccCChh-
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEG--DAILMKWILHCWDDD- 301 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p~~--D~i~~~~vlh~~~d~- 301 (390)
.+..+|||+|||+|.++..++++. +++++|+ +.+++. .++++++++|+.++++.. |+|+++..+|+.++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 345699999999999999999987 8888898 788887 567999999999866543 999999999865544
Q ss_pred ------HHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 302 ------HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 302 ------~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
+...+++++.+.+ |||++++.+... .+.+++.++++++||+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~~~l~~~gf~~~~ 145 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVLARLEERGYGTRI 145 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHHHHHHHTTCEEEE
T ss_pred cccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHHHHHHHCCCcEEE
Confidence 3457899999999 999999876431 1367789999999999988
Q ss_pred EEecC
Q 016366 376 FASCV 380 (390)
Q Consensus 376 ~~~~~ 380 (390)
+....
T Consensus 146 ~~~~~ 150 (170)
T 3q87_B 146 LKVRK 150 (170)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 87654
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.8e-14 Score=124.17 Aligned_cols=143 Identities=14% Similarity=0.085 Sum_probs=97.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhh----CCC------CCCceEEECCCCC-CCCCC-cEEEe
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD----APS------YAGVEHVGGNMFE-SVPEG-DAILM 291 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~----a~~------~~rv~~~~gd~~~-~~p~~-D~i~~ 291 (390)
..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ .++++++++|+.+ +++.+ |.|++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 45678999999999999999999999999999998 776664 222 2589999999988 66544 66552
Q ss_pred c---ccc--ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 292 K---WIL--HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 292 ~---~vl--h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
. ..+ |+.++.. .+|++++++|||||++++........+... .+... ......+..+++.+++
T Consensus 105 ~~~~~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~~~~l~~~l 171 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSSP--EMLRGMAAVCRPGASFLVALNLHAWRPSVP---------EVGEH--PEPTPDSADEWLAPRY 171 (218)
T ss_dssp ESCCHHHHHHHHTSSS--HHHHHHHHTEEEEEEEEEEEEGGGBTTBCG---------GGTTC--CCCCHHHHHHHHHHHH
T ss_pred EccchhhhhhhhccHH--HHHHHHHHHcCCCcEEEEEecccccccccc---------ccccC--CccchHHHHHHHHHHH
Confidence 2 222 2444443 899999999999999998443321111000 00000 0011122345688899
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
+++||++.++..+.
T Consensus 172 ~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 172 AEAGWKLADCRYLE 185 (218)
T ss_dssp HHTTEEEEEEEEEC
T ss_pred HHcCCCceeeeccc
Confidence 99999999887654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.6e-14 Score=123.85 Aligned_cols=137 Identities=17% Similarity=0.097 Sum_probs=99.3
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCC-eEEEecc-hHHHhhCCCC-CCceEEECCCCC-CCCCC--cEEEe
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILM 291 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~-~~p~~--D~i~~ 291 (390)
++..+. .+..+|||||||+|.++..+ .. +++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++
T Consensus 29 ~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 101 (211)
T 2gs9_A 29 ALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLL 101 (211)
T ss_dssp HHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEE
T ss_pred HHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEE
Confidence 444443 26689999999999999887 34 8899998 7888887764 689999999987 66653 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCC
Q 016366 292 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370 (390)
Q Consensus 292 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aG 370 (390)
.+++|++++.. ++|++++++|+|||++++.++.... .+. .........-.......+.++.++++++|+ |
T Consensus 102 ~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 102 FTTLEFVEDVE--RVLLEARRVLRPGGALVVGVLEALS----PWA-ALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp ESCTTTCSCHH--HHHHHHHHHEEEEEEEEEEEECTTS----HHH-HHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred cChhhhcCCHH--HHHHHHHHHcCCCCEEEEEecCCcC----cHH-HHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 99999998765 8999999999999999998765322 111 000000000000001245679999999998 8
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=121.61 Aligned_cols=131 Identities=8% Similarity=0.053 Sum_probs=100.1
Q ss_pred eEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC--cEEEeccccccCCh
Q 016366 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDD 300 (390)
Q Consensus 230 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d 300 (390)
+|||||||+|.++..+++. ..+++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |+|++. +++++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~ 107 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLPS 107 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCCH
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCCH
Confidence 9999999999999999987 458999998 7888887753 379999999988 66643 999985 345676
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
++..++|++++++|+|||++++.+....... . ..... ......++.++++++|+ ||+++++...
T Consensus 108 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-------~--~~~~~----~~~~~~~~~~~l~~~l~--Gf~v~~~~~~ 171 (202)
T 2kw5_A 108 SLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ-------Y--NTGGP----KDLDLLPKLETLQSELP--SLNWLIANNL 171 (202)
T ss_dssp HHHHHHHHHHHTTCCSSEEEEEEEECTTTGG-------G--TSCCS----SSGGGCCCHHHHHHHCS--SSCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecccccc-------C--CCCCC----CcceeecCHHHHHHHhc--CceEEEEEEE
Confidence 7788999999999999999999887643310 0 00000 00123579999999998 9999987654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.50 E-value=5e-13 Score=121.49 Aligned_cols=105 Identities=19% Similarity=0.330 Sum_probs=84.3
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC-cE
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA 288 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-D~ 288 (390)
.++.... ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++++|+.+ +.+.. |+
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 108 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA 108 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccE
Confidence 3444443 345689999999999999999987 468899998 8888887752 479999999987 55544 99
Q ss_pred EEec-cccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 289 ILMK-WILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 289 i~~~-~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
|++. ..+++++.++..++|++++++|+|||++++..
T Consensus 109 v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp EEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 9986 56777787788899999999999999988643
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-14 Score=128.82 Aligned_cols=100 Identities=13% Similarity=0.213 Sum_probs=83.9
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCCCCCC-C-cEEEecccccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFESVPE-G-DAILMKWILHC 297 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~~~p~-~-D~i~~~~vlh~ 297 (390)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++++|+.+..+. . |+|++.+++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 5567899999999999999999986 47888887 778877765 35799999999883343 3 99999999999
Q ss_pred CCh-hHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 298 WDD-DHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 298 ~~d-~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+++ +...++|+++++.|+|||++++.++.
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 996 45568999999999999999987764
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=126.88 Aligned_cols=141 Identities=10% Similarity=0.119 Sum_probs=107.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC-cE
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA 288 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-D~ 288 (390)
.+++.++ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++++|+.+ +.+.. |+
T Consensus 111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 187 (286)
T 3m70_A 111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF 187 (286)
T ss_dssp HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence 3444444 346789999999999999999988 458899998 7788877652 279999999987 44444 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHH
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 368 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~ 368 (390)
|++..++|+++++....+|+++++.|+|||+++++.....+..... ......++.++++++++.
T Consensus 188 i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~ 251 (286)
T 3m70_A 188 IVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENELKEYYKD 251 (286)
T ss_dssp EEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHHHHHTTT
T ss_pred EEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHHHHHhcC
Confidence 9999999999988888999999999999999888776644321110 012334678889998854
Q ss_pred CCCCeeEEEe
Q 016366 369 AGFKGINFAS 378 (390)
Q Consensus 369 aGf~~~~~~~ 378 (390)
|+++....
T Consensus 252 --~~~~~~~~ 259 (286)
T 3m70_A 252 --WEFLEYNE 259 (286)
T ss_dssp --SEEEEEEC
T ss_pred --CEEEEEEc
Confidence 88877643
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.8e-13 Score=117.82 Aligned_cols=121 Identities=13% Similarity=0.140 Sum_probs=98.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCC---C
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP---E 285 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p---~ 285 (390)
..++..+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.++++ ++++++.+|+.+.++ .
T Consensus 30 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 30 AVTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 34555565 66778999999999999999999999999999998 8888887753 689999999977433 2
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 286 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 286 ~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
.|+|++...++ ...++++++++.|+|||++++...... +.+++.++
T Consensus 109 ~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------------------------~~~~~~~~ 154 (204)
T 3e05_A 109 PDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTLD-----------------------------TLTKAVEF 154 (204)
T ss_dssp CSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBHH-----------------------------HHHHHHHH
T ss_pred CCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEecccc-----------------------------cHHHHHHH
Confidence 39999998876 244899999999999999998654310 25667889
Q ss_pred HHHCCC
Q 016366 366 AIAAGF 371 (390)
Q Consensus 366 l~~aGf 371 (390)
++++||
T Consensus 155 l~~~g~ 160 (204)
T 3e05_A 155 LEDHGY 160 (204)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 999998
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-14 Score=133.24 Aligned_cols=150 Identities=12% Similarity=0.115 Sum_probs=101.0
Q ss_pred HHHHHHhhc-cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----C-------------------
Q 016366 216 ERILEHYEG-FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A------------------- 270 (390)
Q Consensus 216 ~~l~~~~~~-~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~------------------- 270 (390)
..+.+.+.. ..++.+|||||||+|.++. ++...+..+++++|+ +.+++.+++. +
T Consensus 59 ~~l~~~l~~~~~~~~~vLDiGcG~G~~~~-l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~ 137 (289)
T 2g72_A 59 RCLAQTFATGEVSGRTLIDIGSGPTVYQL-LSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG 137 (289)
T ss_dssp HHHHHHHHTSCSCCSEEEEETCTTCCGGG-TTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred HHHHHHhCCCCCCCCeEEEECCCcChHHH-HhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence 344444431 1256799999999999543 343334568999998 8888766541 0
Q ss_pred -------------CceEEECCCCC--C-----CCCC--cEEEeccccccCChh--HHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 271 -------------GVEHVGGNMFE--S-----VPEG--DAILMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 271 -------------rv~~~~gd~~~--~-----~p~~--D~i~~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.++++.+|+.+ + ++.+ |+|++..++|++++. +..++|++++++|||||+|++.+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~ 217 (289)
T 2g72_A 138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL 217 (289)
T ss_dssp CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred cchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 14566778876 2 2232 999999999995433 5669999999999999999998644
Q ss_pred cCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 327 VPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 327 ~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
.... . . ..+. . . ....++.++|.++|+++||+++++....
T Consensus 218 ~~~~-----~---~-~~~~---~-~-~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 218 EESW-----Y---L-AGEA---R-L-TVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp SCCE-----E---E-ETTE---E-E-ECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred Ccce-----E---E-cCCe---e-e-eeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 2110 0 0 0000 0 0 1234689999999999999998876543
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.5e-13 Score=119.89 Aligned_cols=141 Identities=13% Similarity=0.122 Sum_probs=100.0
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhC----CCCCCceEEECCCCC-----CCCCC-cEEEecc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA----PSYAGVEHVGGNMFE-----SVPEG-DAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a----~~~~rv~~~~gd~~~-----~~p~~-D~i~~~~ 293 (390)
+.+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+ +..++++++.+|+.+ +++.. |+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 55678999999999999999999988788999998 7777544 345789999999976 22333 9988
Q ss_pred ccccCChh-HHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 294 ILHCWDDD-HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 294 vlh~~~d~-~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
|+.++. ....+|+++++.|+|||++++. ......+..... . ....+++. +|+++||+
T Consensus 149 --~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~~-------~-----------~~~~~~l~-~l~~~Gf~ 206 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKDP-------K-----------EIFKEQKE-ILEAGGFK 206 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSCH-------H-----------HHHHHHHH-HHHHHTEE
T ss_pred --EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCCH-------H-----------HhhHHHHH-HHHHCCCE
Confidence 555543 3357799999999999999987 211111000000 0 01146777 89999999
Q ss_pred eeEEEecCCc---eeEEEEeC
Q 016366 373 GINFASCVCN---LYIMEFFK 390 (390)
Q Consensus 373 ~~~~~~~~~~---~~vi~~~k 390 (390)
++++..+... ..++.++|
T Consensus 207 ~~~~~~~~~~~~~~~~v~~~k 227 (230)
T 1fbn_A 207 IVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp EEEEEECTTTSTTEEEEEEEE
T ss_pred EEEEEccCCCccceEEEEEEe
Confidence 9998877643 56666543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-14 Score=130.51 Aligned_cols=134 Identities=16% Similarity=0.121 Sum_probs=92.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC---CCCCC--cEEEe---
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE---SVPEG--DAILM--- 291 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~---~~p~~--D~i~~--- 291 (390)
.++.+|||||||+|..+..+++..|. +++++|+ |.+++.|++. .+++++.+|+.+ +++.. |.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 46789999999999999999988774 6888898 8899888752 468889998754 34543 77764
Q ss_pred --ccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHC
Q 016366 292 --KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA 369 (390)
Q Consensus 292 --~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~a 369 (390)
...++++++. ..++++++|+|||||+|++.+...... ......+ .-.....+.+...|.++
T Consensus 138 ~~~~~~~~~~~~--~~~~~e~~rvLkPGG~l~f~~~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~L~ea 200 (236)
T 3orh_A 138 PLSEETWHTHQF--NFIKNHAFRLLKPGGVLTYCNLTSWGE-------LMKSKYS--------DITIMFEETQVPALLEA 200 (236)
T ss_dssp CCBGGGTTTHHH--HHHHHTHHHHEEEEEEEEECCHHHHHH-------HTTTTCS--------CHHHHHHHHTHHHHHHH
T ss_pred ecccchhhhcch--hhhhhhhhheeCCCCEEEEEecCCchh-------hhhhhhh--------hhhhhhHHHHHHHHHHc
Confidence 4555566554 489999999999999998765431110 0000000 00111245667788899
Q ss_pred CCCeeEEE
Q 016366 370 GFKGINFA 377 (390)
Q Consensus 370 Gf~~~~~~ 377 (390)
||+++.+.
T Consensus 201 GF~~~~i~ 208 (236)
T 3orh_A 201 GFRRENIR 208 (236)
T ss_dssp TCCGGGEE
T ss_pred CCeEEEEE
Confidence 99976553
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-13 Score=121.66 Aligned_cols=145 Identities=12% Similarity=0.024 Sum_probs=92.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc--hHHHhhC---CCC------CCceEEECCCCCCCCC--CcEEEec
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDA---PSY------AGVEHVGGNMFESVPE--GDAILMK 292 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl--~~~~~~a---~~~------~rv~~~~gd~~~~~p~--~D~i~~~ 292 (390)
.+..+|||||||+|.++..++++.|+.+++++|+ +.|++.| +++ ++++++.+|+.+. |. .|.|.+.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhccCeEEEE
Confidence 4667999999999999999999999999999998 4455554 542 5799999999762 32 2555444
Q ss_pred cccccCChhH------HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 293 WILHCWDDDH------CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 293 ~vlh~~~d~~------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
.+.+.|+... ...+|++++++|||||++++......... .... ..... ... .......+++.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~~~~----~~~~~---~~~-~~~~~~~~el~~~l 172 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYE-EAEI----KKRGL---PLL-SKAYFLSEQYKAEL 172 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC----------------------C-CHHHHHSHHHHHHH
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccch-hchh----hhcCC---CCC-ChhhcchHHHHHHH
Confidence 4443333210 13689999999999999998554332210 0000 00000 000 00111123599999
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
+++||++..+....
T Consensus 173 ~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 173 SNSGFRIDDVKELD 186 (225)
T ss_dssp HHHTCEEEEEEEEC
T ss_pred HHcCCCeeeeeecC
Confidence 99999998877654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-13 Score=120.66 Aligned_cols=129 Identities=12% Similarity=0.044 Sum_probs=103.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCCC-cEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG-DAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~~-D~i~~~~vlh~ 297 (390)
.+..+|||||||+|.++..+++ .+..+++++|+ +.+++.++++ .+++++.+|+.+..+.. |+|++...+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 4568999999999999999776 46678999998 8888877752 34999999998754444 99999888765
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
...+++++++.|+|||++++.+.... +.+++.++++++||+++++.
T Consensus 138 -----~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp -----HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEecCcc-----------------------------cHHHHHHHHHHcCCceEEee
Confidence 35889999999999999998655421 36678899999999999988
Q ss_pred ecCCceeEEEEe
Q 016366 378 SCVCNLYIMEFF 389 (390)
Q Consensus 378 ~~~~~~~vi~~~ 389 (390)
.......++.-+
T Consensus 184 ~~~~w~~~~~~~ 195 (205)
T 3grz_A 184 RAGRWIGLAISR 195 (205)
T ss_dssp EETTEEEEEEEE
T ss_pred ccCCEEEEEEec
Confidence 877666666543
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.45 E-value=7.9e-13 Score=114.68 Aligned_cols=141 Identities=14% Similarity=0.240 Sum_probs=108.6
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------C--CceEEECCCCCCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A--GVEHVGGNMFESVPE- 285 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~--rv~~~~gd~~~~~p~- 285 (390)
..+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. + +++++.+|+.++.+.
T Consensus 42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 34555555 557789999999999999999988 678899998 7788777652 3 499999999885554
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHH
Q 016366 286 G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 364 (390)
Q Consensus 286 ~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ 364 (390)
. |+|++...+|+ ..+....+++++++.|+|||++++....... ..++.+
T Consensus 119 ~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~-----------------------------~~~~~~ 168 (194)
T 1dus_A 119 KYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQG-----------------------------AKSLAK 168 (194)
T ss_dssp CEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTHH-----------------------------HHHHHH
T ss_pred CceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCCC-----------------------------hHHHHH
Confidence 3 99999988875 3455679999999999999999987664210 234566
Q ss_pred HHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 365 LAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 365 ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
.+++. |..+++.....++.++.++|
T Consensus 169 ~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 169 YMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHH-hcceEEEecCCcEEEEEEee
Confidence 77776 77777777777888887765
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=121.41 Aligned_cols=143 Identities=15% Similarity=0.183 Sum_probs=108.7
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC-C-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~-~- 286 (390)
..+++.++ .+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++++ ++++++++|++++++. .
T Consensus 100 ~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~f 177 (276)
T 2b3t_A 100 EQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQF 177 (276)
T ss_dssp HHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCE
T ss_pred HHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCc
Confidence 34445443 3567999999999999999999999999999998 7888877753 4799999999886543 3
Q ss_pred cEEEecc-------------ccccCCh----------hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhh
Q 016366 287 DAILMKW-------------ILHCWDD----------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL 343 (390)
Q Consensus 287 D~i~~~~-------------vlh~~~d----------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~ 343 (390)
|+|+++- ++++.|. ....++++++.+.|+|||++++...
T Consensus 178 D~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~------------------ 239 (276)
T 2b3t_A 178 AMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG------------------ 239 (276)
T ss_dssp EEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC------------------
T ss_pred cEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC------------------
Confidence 9999983 4444331 3457899999999999999887421
Q ss_pred hhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEe-cCCceeEEEEeC
Q 016366 344 DVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS-CVCNLYIMEFFK 390 (390)
Q Consensus 344 d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~k 390 (390)
..+.+++.++++++||+.+++.. ..+...++.++|
T Consensus 240 ------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 ------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp ------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred ------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 01367789999999999888765 446666666654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.2e-13 Score=129.31 Aligned_cols=113 Identities=12% Similarity=0.178 Sum_probs=91.1
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC---------------CCCceEEECC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------------YAGVEHVGGN 278 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------------~~rv~~~~gd 278 (390)
+..+++.+. ..+..+|||||||+|..+..++...+..+++++|+ +.+++.|++ .++|+|+++|
T Consensus 162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 345666666 77889999999999999999999887767999998 666665543 2689999999
Q ss_pred CCC-CCC----CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCC
Q 016366 279 MFE-SVP----EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP 331 (390)
Q Consensus 279 ~~~-~~p----~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~ 331 (390)
+++ +++ ..|+|+++++++ + ++....|+++++.|||||+|++.|.+.+++.
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 998 653 359999988764 3 3455789999999999999999999887653
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-13 Score=114.35 Aligned_cols=102 Identities=20% Similarity=0.245 Sum_probs=82.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------C-CceEEECCCCCCCC---C
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFESVP---E 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~-rv~~~~gd~~~~~p---~ 285 (390)
.+++.+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. + ++ ++.+|..+.++ .
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 4455555 56778999999999999999999999999999998 7788877742 3 78 88899876443 2
Q ss_pred -CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 286 -GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 286 -~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.|+|++...+|+ ..+++++++.|+|||++++.+..
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECS
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEeec
Confidence 399999999987 37899999999999999986653
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-12 Score=132.84 Aligned_cols=108 Identities=17% Similarity=0.180 Sum_probs=90.2
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCC------------CCCceEEECCCCC-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS------------YAGVEHVGGNMFE- 281 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~------------~~rv~~~~gd~~~- 281 (390)
.+++.+. ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.|++ .++|+++++|+.+
T Consensus 712 ~LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL 790 (950)
T 3htx_A 712 YALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF 790 (950)
T ss_dssp HHHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC
T ss_pred HHHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC
Confidence 3444444 3467899999999999999999998 5678999998 888888765 2579999999988
Q ss_pred CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 282 SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 282 ~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+.+.+ |+|++..++||++++....+++++++.|+|| .++|.++.
T Consensus 791 p~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 791 DSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp CTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred CcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 65533 9999999999999988888999999999999 77776654
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-13 Score=122.53 Aligned_cols=145 Identities=14% Similarity=0.052 Sum_probs=92.4
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCC-----CceEEECCCCCCCC-----
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYA-----GVEHVGGNMFESVP----- 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~-----rv~~~~gd~~~~~p----- 284 (390)
..+++.++...+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++++- +++++++|+.++++
T Consensus 19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 98 (215)
T 4dzr_A 19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAER 98 (215)
T ss_dssp HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhc
Confidence 44555554225678999999999999999999999999999998 88888888641 68888899877443
Q ss_pred -CC-cEEEecccccc------CChhHH------------------HHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHh
Q 016366 285 -EG-DAILMKWILHC------WDDDHC------------------LRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR 338 (390)
Q Consensus 285 -~~-D~i~~~~vlh~------~~d~~~------------------~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~ 338 (390)
.. |+|+++-.++. +++... ..++++++++|+|||++++++...
T Consensus 99 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------- 167 (215)
T 4dzr_A 99 GRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH----------- 167 (215)
T ss_dssp TCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT-----------
T ss_pred cCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC-----------
Confidence 23 99999654433 222221 688999999999999955554321
Q ss_pred hhhhhhhhhhhhcCCCcccCHHHHHHHHH--HCCCCeeEEEecC-CceeEEEEe
Q 016366 339 ETSLLDVLLMTRDGGGRERTKKEYTELAI--AAGFKGINFASCV-CNLYIMEFF 389 (390)
Q Consensus 339 ~~~~~d~~~~~~~~~g~~~t~~e~~~ll~--~aGf~~~~~~~~~-~~~~vi~~~ 389 (390)
...+++.++++ ++||..+++.... +...++.++
T Consensus 168 ------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~ 203 (215)
T 4dzr_A 168 ------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVT 203 (215)
T ss_dssp ------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEE
T ss_pred ------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEE
Confidence 12456677888 8899888876655 343444443
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-13 Score=122.95 Aligned_cols=100 Identities=18% Similarity=0.264 Sum_probs=77.8
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC---CCCCC--cEEEe-cc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE---SVPEG--DAILM-KW 293 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~---~~p~~--D~i~~-~~ 293 (390)
.+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4568999999999999999976544 37899998 8888877652 569999999865 35543 99998 55
Q ss_pred c--cccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 294 I--LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 294 v--lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
. .+.+.......+|++++++|||||++++.+..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 4 33444445567899999999999999987654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.3e-13 Score=123.69 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=98.7
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----C--------CceEEECCCCC---------CCC
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A--------GVEHVGGNMFE---------SVP 284 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~--------rv~~~~gd~~~---------~~p 284 (390)
...+|||||||+|..+..+++.. ..+++++|+ +.+++.|+++ . ++++.+.|+.. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 46799999999998777666543 457899998 8899988863 1 25688888732 234
Q ss_pred CC--cEEEeccccccC-ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCC---C--------cch-HHhhhhh----hhh
Q 016366 285 EG--DAILMKWILHCW-DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP---E--------VSS-AARETSL----LDV 345 (390)
Q Consensus 285 ~~--D~i~~~~vlh~~-~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~---~--------~~~-~~~~~~~----~d~ 345 (390)
.+ |+|+|..++|+. .+++..++|++++++|||||++++..+....-. . ... ...+... .+.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 206 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR 206 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence 33 999999999974 444557999999999999999988765311100 0 000 0000000 000
Q ss_pred hhhhhcCCC-------cccCHHHHHHHHHHCCCCeeEEEec
Q 016366 346 LLMTRDGGG-------RERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 346 ~~~~~~~~g-------~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
.. ...+.+ ...+.+++.++++++||+++.....
T Consensus 207 ~~-~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 207 IV-VYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp EE-EBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred cc-eeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 00 000111 2457899999999999999887654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-12 Score=113.30 Aligned_cols=98 Identities=17% Similarity=0.265 Sum_probs=78.7
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-C--CCCC--cEEEeccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG--DAILMKWI 294 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~--~p~~--D~i~~~~v 294 (390)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ ++++++++|+.+ + ++.+ |+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 467899999999999999999999999999998 7888877652 689999999987 4 5543 99998865
Q ss_pred cccCChh------HHHHHHHHHHHhCCCCcEEEEEe
Q 016366 295 LHCWDDD------HCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 295 lh~~~d~------~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.++.... ....+|+++.++|+|||.+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 4322211 12479999999999999998854
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.7e-13 Score=121.81 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=79.9
Q ss_pred CcceEEEEcCCccH----HHHHHHhhCC----CCeEEEecc-hHHHhhCCCC----------------------------
Q 016366 227 NVERLVDVGGGFGV----TLSMITSKYP----QIKAVNFDL-PHVVQDAPSY---------------------------- 269 (390)
Q Consensus 227 ~~~~iLDiG~G~G~----~~~~l~~~~p----~~~~~~~Dl-~~~~~~a~~~---------------------------- 269 (390)
+..+|+|+|||+|. ++..+++..| +.+++++|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5555666644 468899998 8888877642
Q ss_pred ---------CCceEEECCCCC-CCC--CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 016366 270 ---------AGVEHVGGNMFE-SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 270 ---------~rv~~~~gd~~~-~~p--~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli 322 (390)
.+|+|.++|+.+ +++ .. |+|+|.+++++++++...+++++++++|+|||+|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 258999999998 565 23 999999999999998888999999999999999887
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.2e-13 Score=123.43 Aligned_cols=125 Identities=11% Similarity=0.096 Sum_probs=94.5
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCC----C---CCceEEECCCCCCCCCC-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS----Y---AGVEHVGGNMFESVPEG- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~----~---~rv~~~~gd~~~~~p~~- 286 (390)
.++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ . ++++++.+|+.++++..
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4555555 667789999999999999999998 78899999998 778776654 2 57999999998866643
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
|+|++ +.++.+ ++|+++++.|+|||++++.+.... ..+++.++
T Consensus 180 fD~Vi~-----~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~-----------------------------~~~~~~~~ 223 (275)
T 1yb2_A 180 YDAVIA-----DIPDPW--NHVQKIASMMKPGSVATFYLPNFD-----------------------------QSEKTVLS 223 (275)
T ss_dssp EEEEEE-----CCSCGG--GSHHHHHHTEEEEEEEEEEESSHH-----------------------------HHHHHHHH
T ss_pred ccEEEE-----cCcCHH--HHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHH
Confidence 99987 355554 889999999999999998764310 13445667
Q ss_pred HHHCCCCeeEEEe
Q 016366 366 AIAAGFKGINFAS 378 (390)
Q Consensus 366 l~~aGf~~~~~~~ 378 (390)
++++||+.+++..
T Consensus 224 l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 224 LSASGMHHLETVE 236 (275)
T ss_dssp SGGGTEEEEEEEE
T ss_pred HHHCCCeEEEEEE
Confidence 7778888777654
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=118.90 Aligned_cols=106 Identities=12% Similarity=0.135 Sum_probs=81.8
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CC------CCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SV------PEG- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~------p~~- 286 (390)
..+++.++ ..+..+|||||||+|.++..++++. .+++++|+ +.|++.++++..-.++.+++.+ +. +..
T Consensus 35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g--~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~f 111 (261)
T 3iv6_A 35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALERG--ASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHF 111 (261)
T ss_dssp HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCC
T ss_pred HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCc
Confidence 45666666 6778899999999999999999874 57888888 8899888764211123333333 22 223
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|+|++..++||++.++...++++++++| |||++++...
T Consensus 112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 112 DFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 9999999999999888889999999999 9999998754
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-11 Score=109.54 Aligned_cols=122 Identities=12% Similarity=0.123 Sum_probs=93.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------C-CceEEECCCCCCCC---C
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFESVP---E 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~-rv~~~~gd~~~~~p---~ 285 (390)
.++..+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. + +++++.+|+.+.++ .
T Consensus 46 ~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 46 LTLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 3455555 667789999999999999999988 678999998 8888877752 4 89999999987322 3
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 286 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 286 ~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
.|+|++...+ + .. +++++++.|+|||++++...... +..++.++
T Consensus 123 ~D~v~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~~~~~-----------------------------~~~~~~~~ 166 (204)
T 3njr_A 123 PEAVFIGGGG----S--QA-LYDRLWEWLAPGTRIVANAVTLE-----------------------------SETLLTQL 166 (204)
T ss_dssp CSEEEECSCC----C--HH-HHHHHHHHSCTTCEEEEEECSHH-----------------------------HHHHHHHH
T ss_pred CCEEEECCcc----c--HH-HHHHHHHhcCCCcEEEEEecCcc-----------------------------cHHHHHHH
Confidence 4999987744 1 23 89999999999999988654310 24566778
Q ss_pred HHHCCCCeeEEE
Q 016366 366 AIAAGFKGINFA 377 (390)
Q Consensus 366 l~~aGf~~~~~~ 377 (390)
+++.||++.++.
T Consensus 167 l~~~g~~i~~i~ 178 (204)
T 3njr_A 167 HARHGGQLLRID 178 (204)
T ss_dssp HHHHCSEEEEEE
T ss_pred HHhCCCcEEEEE
Confidence 888898877754
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.35 E-value=7.8e-12 Score=110.82 Aligned_cols=137 Identities=14% Similarity=0.157 Sum_probs=95.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hH----HHhhCCCCCCceEEECCCCCC-----CCCC-cEEEecc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PH----VVQDAPSYAGVEHVGGNMFES-----VPEG-DAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~----~~~~a~~~~rv~~~~gd~~~~-----~p~~-D~i~~~~ 293 (390)
..++.+|||||||+|.++..+++..++.+++++|+ +. +++.+++..++.++.+|+.++ ++.. |+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45678999999999999999999987778999998 54 445555567899999998763 2333 999987
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHH----HHHHHHC
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY----TELAIAA 369 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~----~~ll~~a 369 (390)
+.+ ..+...+|++++++|||||++++.-... ..+ . ..+.+++ .+.++++
T Consensus 134 ~~~---~~~~~~~l~~~~r~LkpgG~l~i~~~~~--------------~~~---------~-~~~~~~~~~~~~~~l~~~ 186 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKEKGEVVIMVKAR--------------SID---------S-TAEPEEVFKSVLKEMEGD 186 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEEEEEEEEEEEHH--------------HHC---------T-TSCHHHHHHHHHHHHHTT
T ss_pred ccC---hhHHHHHHHHHHHHhCCCCEEEEEEecC--------------Ccc---------c-cCCHHHHHHHHHHHHHhh
Confidence 322 2334456999999999999999873221 000 0 0122332 1237888
Q ss_pred CCCeeEEEecC---CceeEEEEeC
Q 016366 370 GFKGINFASCV---CNLYIMEFFK 390 (390)
Q Consensus 370 Gf~~~~~~~~~---~~~~vi~~~k 390 (390)
|++++..... ..+.++.++|
T Consensus 187 -f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 187 -FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp -SEEEEEEECTTTCTTEEEEEEEE
T ss_pred -cEEeeeecCCCCCCCcEEEEEEc
Confidence 9999998774 3556666553
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=118.57 Aligned_cols=128 Identities=14% Similarity=0.160 Sum_probs=100.8
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE 285 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~ 285 (390)
...++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++. ++++++.+|+.+.++.
T Consensus 82 ~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (255)
T 3mb5_A 82 AALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE 160 (255)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred HHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence 345566665 677889999999999999999999 88999999998 7888887753 4599999999887665
Q ss_pred C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHH
Q 016366 286 G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT 363 (390)
Q Consensus 286 ~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~ 363 (390)
. |+|++ +.++.. .+|++++++|+|||++++..+... ...++.
T Consensus 161 ~~~D~v~~-----~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 204 (255)
T 3mb5_A 161 ENVDHVIL-----DLPQPE--RVVEHAAKALKPGGFFVAYTPCSN-----------------------------QVMRLH 204 (255)
T ss_dssp CSEEEEEE-----CSSCGG--GGHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred CCcCEEEE-----CCCCHH--HHHHHHHHHcCCCCEEEEEECCHH-----------------------------HHHHHH
Confidence 4 99987 345544 789999999999999998754310 144567
Q ss_pred HHHHHCC--CCeeEEEec
Q 016366 364 ELAIAAG--FKGINFASC 379 (390)
Q Consensus 364 ~ll~~aG--f~~~~~~~~ 379 (390)
++++++| |..+++...
T Consensus 205 ~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 205 EKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHTGGGBSCCEEECC
T ss_pred HHHHHcCCCccccEEEEE
Confidence 7888899 988877654
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-12 Score=115.57 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=84.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----CCceEEECCCCC-CCCCC--cEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--DAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~ 297 (390)
.+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++..++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 46689999999999999999998764 7888887 7787776652 689999999988 66643 99999999987
Q ss_pred CC-------------hhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 298 WD-------------DDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 298 ~~-------------d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
+. .....++|++++++|+|||++++.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 65 3456799999999999999999988653
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.5e-12 Score=112.90 Aligned_cols=133 Identities=12% Similarity=0.088 Sum_probs=94.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCC----CCCCceEEECCCCCC--CC--CC--cEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAP----SYAGVEHVGGNMFES--VP--EG--DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~----~~~rv~~~~gd~~~~--~p--~~--D~i~~~ 292 (390)
++++.+|||+|||+|.++..+++. .|+-+++++|+ +.+++.++ +.+++..+.+|..++ .+ .. |+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 678899999999999999999986 58889999998 77776554 457899999998762 12 22 888764
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
.. +.. +...+++++++.|||||+++|+......+ ... .. ....++..+.|+++||+
T Consensus 155 ~~--~~~--~~~~~l~~~~r~LKpGG~lvI~ik~r~~d--------------~~~-----p~-~~~~~~ev~~L~~~GF~ 210 (233)
T 4df3_A 155 VA--QPE--QAAIVVRNARFFLRDGGYMLMAIKARSID--------------VTT-----EP-SEVYKREIKTLMDGGLE 210 (233)
T ss_dssp CC--CTT--HHHHHHHHHHHHEEEEEEEEEEEECCHHH--------------HHT-----CC-CHHHHHHHHHHHHTTCC
T ss_pred cc--CCh--hHHHHHHHHHHhccCCCEEEEEEecccCC--------------CCC-----Ch-HHHHHHHHHHHHHCCCE
Confidence 32 222 34578999999999999999875432110 000 00 00123445678899999
Q ss_pred eeEEEecCC
Q 016366 373 GINFASCVC 381 (390)
Q Consensus 373 ~~~~~~~~~ 381 (390)
+++...+..
T Consensus 211 l~e~i~L~p 219 (233)
T 4df3_A 211 IKDVVHLDP 219 (233)
T ss_dssp EEEEEECTT
T ss_pred EEEEEccCC
Confidence 999887753
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.1e-12 Score=113.68 Aligned_cols=141 Identities=11% Similarity=0.015 Sum_probs=96.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hH----HHhhCCCCCCceEEECCCCCC--CC--C-C-cEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH----VVQDAPSYAGVEHVGGNMFES--VP--E-G-DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~----~~~~a~~~~rv~~~~gd~~~~--~p--~-~-D~i~~~ 292 (390)
+.+..+|||+|||+|.++..+++.+ |..+++++|+ +. +++.+++.++++++.+|+.++ ++ . . |+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5567899999999999999999986 7789999998 44 455555568899999999872 22 2 3 999985
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
.. ..+....+++++++.|+|||++++.-........... .. +-.++ .++|+++||+
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~----------~~---------~~~~~-~~~l~~~Gf~ 210 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASA----------EA---------VFASE-VKKMQQENMK 210 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCH----------HH---------HHHHH-HHTTGGGTEE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCH----------HH---------HHHHH-HHHHHHCCCc
Confidence 44 2233456799999999999999984221100000000 00 00123 5889999999
Q ss_pred eeEEEecCCc---eeEEEEe
Q 016366 373 GINFASCVCN---LYIMEFF 389 (390)
Q Consensus 373 ~~~~~~~~~~---~~vi~~~ 389 (390)
++++..+..+ ..++.++
T Consensus 211 ~~~~~~~~~~~~~~~~v~~~ 230 (233)
T 2ipx_A 211 PQEQLTLEPYERDHAVVVGV 230 (233)
T ss_dssp EEEEEECTTTSSSEEEEEEE
T ss_pred eEEEEecCCccCCcEEEEEE
Confidence 9997766532 4544443
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.7e-12 Score=109.52 Aligned_cols=121 Identities=21% Similarity=0.178 Sum_probs=93.5
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC--C
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--G 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~--~ 286 (390)
.+++.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++. ++++++.+|+.++++. .
T Consensus 24 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 3444455 5677899999999999999999987 68899998 7788777652 5799999998763332 3
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
|+|++..+++++ ..+++++.+.|+|||++++...... +..++.++
T Consensus 101 ~D~v~~~~~~~~~-----~~~l~~~~~~l~~gG~l~~~~~~~~-----------------------------~~~~~~~~ 146 (192)
T 1l3i_A 101 IDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAILLE-----------------------------TKFEAMEC 146 (192)
T ss_dssp EEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEECBHH-----------------------------HHHHHHHH
T ss_pred CCEEEECCchHHH-----HHHHHHHHHhcCCCcEEEEEecCcc-----------------------------hHHHHHHH
Confidence 999999887653 5889999999999999998654210 14567888
Q ss_pred HHHCCCCee
Q 016366 366 AIAAGFKGI 374 (390)
Q Consensus 366 l~~aGf~~~ 374 (390)
+++.||.+.
T Consensus 147 l~~~g~~~~ 155 (192)
T 1l3i_A 147 LRDLGFDVN 155 (192)
T ss_dssp HHHTTCCCE
T ss_pred HHHCCCceE
Confidence 999999543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-12 Score=115.45 Aligned_cols=114 Identities=12% Similarity=0.147 Sum_probs=88.9
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-CCCceEEECCCCC--CCC-CC--cEEEeccccccC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFE--SVP-EG--DAILMKWILHCW 298 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~--~~p-~~--D~i~~~~vlh~~ 298 (390)
.+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++++|+.+ +++ .+ |+|++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------ 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------ 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence 45689999999999999999998 468899998 888888876 4789999999965 444 33 999987
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEe
Q 016366 299 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 378 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 378 (390)
.+ ...+|++++++|+|||+++.. +...+.+++.++++++||++.++..
T Consensus 119 ~~--~~~~l~~~~~~LkpgG~l~~~------------------------------~~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 119 RG--PTSVILRLPELAAPDAHFLYV------------------------------GPRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp SC--CSGGGGGHHHHEEEEEEEEEE------------------------------ESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred CC--HHHHHHHHHHHcCCCcEEEEe------------------------------CCcCCHHHHHHHHHHCCCeEEEEEe
Confidence 22 237899999999999998800 1112456788888999998877654
Q ss_pred c
Q 016366 379 C 379 (390)
Q Consensus 379 ~ 379 (390)
.
T Consensus 167 ~ 167 (226)
T 3m33_A 167 V 167 (226)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=111.05 Aligned_cols=128 Identities=17% Similarity=0.158 Sum_probs=94.9
Q ss_pred cCCcceEEEEcCC-ccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCC--CCCCCC--cEEEecc
Q 016366 225 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMF--ESVPEG--DAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~--~~~p~~--D~i~~~~ 293 (390)
..+..+|||+||| +|.++..+++.. ..+++++|+ +.+++.++++ .+++++.+|+. .+++.. |+|+++-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 3567899999999 999999999986 678899998 8888887752 27999999964 355543 9999987
Q ss_pred ccccCChhH-----------------HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcc
Q 016366 294 ILHCWDDDH-----------------CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE 356 (390)
Q Consensus 294 vlh~~~d~~-----------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 356 (390)
.+++.++.. ..++|+++.+.|+|||++++......
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------------- 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE---------------------------- 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH----------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH----------------------------
Confidence 776654322 26899999999999999998633200
Q ss_pred cCHHHHHHHHHHCCCCeeEEEecCC
Q 016366 357 RTKKEYTELAIAAGFKGINFASCVC 381 (390)
Q Consensus 357 ~t~~e~~~ll~~aGf~~~~~~~~~~ 381 (390)
...+++.+++++.||.+..+....+
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~~~~g 208 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIKFKVG 208 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred hHHHHHHHHHHHcCCceEEEEecCC
Confidence 1256778899999998777655443
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.2e-11 Score=107.89 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=96.7
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhh----CCCCCCceEEECCCCCC-----CCCC-cEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQD----APSYAGVEHVGGNMFES-----VPEG-DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~----a~~~~rv~~~~gd~~~~-----~p~~-D~i~~~ 292 (390)
+.+..+|||+|||+|.++..+++.. |+.+++++|. +.+++. +++.++++++.+|+.++ .+.. |+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4567899999999999999999885 6678999998 654443 44457899999999872 2333 999976
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
.. .+ .....+++++++.|+|||++++. .......... .......+++.++ +++ |+
T Consensus 151 ~~---~~-~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~------------------~~~~~~~~~l~~l-~~~-f~ 205 (227)
T 1g8a_A 151 VA---QP-TQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTK------------------EPEQVFREVEREL-SEY-FE 205 (227)
T ss_dssp CC---ST-THHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTS------------------CHHHHHHHHHHHH-HTT-SE
T ss_pred CC---CH-hHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCC------------------ChhhhhHHHHHHH-Hhh-ce
Confidence 54 22 23345699999999999999987 2211100000 0001135677777 777 99
Q ss_pred eeEEEecCCc---eeEEEEeC
Q 016366 373 GINFASCVCN---LYIMEFFK 390 (390)
Q Consensus 373 ~~~~~~~~~~---~~vi~~~k 390 (390)
+++...+..+ ..++.++|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 206 VIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEEC
T ss_pred eeeEeccCcccCCCEEEEEEe
Confidence 9998887644 55666554
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7e-12 Score=117.93 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=81.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------------CCceEEECCCCC-C----CC--
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------------AGVEHVGGNMFE-S----VP-- 284 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------------~rv~~~~gd~~~-~----~p-- 284 (390)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++++|+.+ + ++
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 36679999999999999999874 5678999998 7888877642 268999999987 4 42
Q ss_pred C-C-cEEEeccccccC--ChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 285 E-G-DAILMKWILHCW--DDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 285 ~-~-D~i~~~~vlh~~--~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
. . |+|++..++|+. +.++...+|++++++|+|||.+++..+.
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 2 3 999999999987 3455679999999999999999987663
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=8.7e-12 Score=107.81 Aligned_cols=133 Identities=12% Similarity=0.115 Sum_probs=90.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC--CCCC-C-cEEEecc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE--SVPE-G-DAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~--~~p~-~-D~i~~~~ 293 (390)
..+..+|||+|||+|.++..++++ ..+++++|+ +.+++.++++ ++++++.+|+.. +.+. . |+|++..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 356789999999999999999988 678999998 8888888753 679999977765 1333 3 9998763
Q ss_pred -ccccC------ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 294 -ILHCW------DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 294 -vlh~~------~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
.+++. ..+....+|+++++.|+|||++++........... . .....+|.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--~-------------------~~~~~~~~~~l 156 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDM--E-------------------KDAVLEYVIGL 156 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CH--H-------------------HHHHHHHHHHS
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHH--H-------------------HHHHHHHHHhC
Confidence 32220 22455688999999999999999876542221000 0 01134455555
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
...+|.+.+.....
T Consensus 157 ~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 157 DQRVFTAMLYQPLN 170 (185)
T ss_dssp CTTTEEEEEEEESS
T ss_pred CCceEEEEEehhhc
Confidence 66788888877664
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.2e-12 Score=115.96 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=95.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---C--CceEEECCCCCCCCC-C-cEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---A--GVEHVGGNMFESVPE-G-DAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~--rv~~~~gd~~~~~p~-~-D~i~~~~vlh~ 297 (390)
.+..+|||+|||+|.++..+++..+ +++++|+ +.+++.++++ . .+++..+|+.+.++. . |+|+++...|+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~~ 196 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAEL 196 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHHH
Confidence 4568999999999999999988766 8888887 7888877652 1 289999998765443 3 99998755442
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
...+++++++.|+|||++++.+.... +.+++.++++++||+++++.
T Consensus 197 -----~~~~l~~~~~~LkpgG~lils~~~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 197 -----HAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp -----HHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTCEEEEEE
T ss_pred -----HHHHHHHHHHHcCCCCEEEEEeeccC-----------------------------CHHHHHHHHHHCCCEEEEEe
Confidence 46899999999999999998765421 26788999999999999887
Q ss_pred ecCCce
Q 016366 378 SCVCNL 383 (390)
Q Consensus 378 ~~~~~~ 383 (390)
....-.
T Consensus 243 ~~~~W~ 248 (254)
T 2nxc_A 243 AEGEWV 248 (254)
T ss_dssp EETTEE
T ss_pred ccCCeE
Confidence 765433
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.2e-12 Score=117.87 Aligned_cols=129 Identities=14% Similarity=0.178 Sum_probs=94.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCC-CC--CC-C-cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE-SV--PE-G-DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~-~~--p~-~-D~i 289 (390)
.++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .++++++.+|+.+ .. +. . |+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998877889999998 788877664 2689999999876 22 33 3 999
Q ss_pred EeccccccCChhHH--HHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHH
Q 016366 290 LMKWILHCWDDDHC--LRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 367 (390)
Q Consensus 290 ~~~~vlh~~~d~~~--~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~ 367 (390)
++....+..+.... .+++++++++|+|||++++..... +. ......++.+.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~-----------~~~~~~~~~~~l~ 228 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------------WL-----------DLELIEKMSRFIR 228 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------------TT-----------CHHHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------cc-----------chHHHHHHHHHHH
Confidence 99877766554322 589999999999999998863210 00 0113677889999
Q ss_pred HCCCCeeEEEec
Q 016366 368 AAGFKGINFASC 379 (390)
Q Consensus 368 ~aGf~~~~~~~~ 379 (390)
++||..+++...
T Consensus 229 ~~GF~~v~~~~~ 240 (304)
T 3bwc_A 229 ETGFASVQYALM 240 (304)
T ss_dssp HHTCSEEEEEEC
T ss_pred hCCCCcEEEEEe
Confidence 999998887654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.8e-12 Score=109.21 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=77.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------C-CceEEECCCCC-CCCCC-cEEEecccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFE-SVPEG-DAILMKWIL 295 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~-rv~~~~gd~~~-~~p~~-D~i~~~~vl 295 (390)
..+.+|||||||+|.++..++...|+++++++|+ +.+++.++++ . ++++ .|..+ +.+.. |+|+...++
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML 125 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence 4678999999999999999999999999999999 8899988863 1 3444 66665 33333 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
|++++ ....+.++++.|+|||.++-.+
T Consensus 126 HlL~~--~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 126 PVLKQ--QDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHHHH--TTCCHHHHHHTCEEEEEEEEEE
T ss_pred Hhhhh--hHHHHHHHHHHhCCCCEEEEeC
Confidence 99933 3467779999999999877655
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-12 Score=109.69 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=87.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--CCceEEECCCCC-CC---CCC--cEEEecccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SV---PEG--DAILMKWIL 295 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--~rv~~~~gd~~~-~~---p~~--D~i~~~~vl 295 (390)
..++.+|||||||. +.+|+ +.|++.++++ .+++++.+|+.+ +. +.+ |+|++.+++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56788999999996 22776 7888888764 369999999987 54 443 999999999
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCee
Q 016366 296 HCW-DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 374 (390)
Q Consensus 296 h~~-~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 374 (390)
|++ ++.. ++|++++++|||||++++.++...... .....++.++|.++|+++|| +.
T Consensus 74 ~~~~~~~~--~~l~~~~r~LkpgG~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~aGf-i~ 130 (176)
T 2ld4_A 74 GSTTLHSA--EILAEIARILRPGGCLFLKEPVETAVD--------------------NNSKVKTASKLCSALTLSGL-VE 130 (176)
T ss_dssp TCCCCCCH--HHHHHHHHHEEEEEEEEEEEEEESSSC--------------------SSSSSCCHHHHHHHHHHTTC-EE
T ss_pred hhcccCHH--HHHHHHHHHCCCCEEEEEEcccccccc--------------------cccccCCHHHHHHHHHHCCC-cE
Confidence 999 7654 899999999999999999766432210 01223578999999999999 44
Q ss_pred EEEe
Q 016366 375 NFAS 378 (390)
Q Consensus 375 ~~~~ 378 (390)
+..
T Consensus 131 -~~~ 133 (176)
T 2ld4_A 131 -VKE 133 (176)
T ss_dssp -EEE
T ss_pred -eec
Confidence 443
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.6e-12 Score=113.62 Aligned_cols=127 Identities=14% Similarity=0.165 Sum_probs=98.1
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP 284 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p 284 (390)
...++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++. ++++++.+|+.+ +++
T Consensus 85 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 85 ASAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 345666666 677889999999999999999998 67889999998 7787777642 689999999987 476
Q ss_pred CC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHH
Q 016366 285 EG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 362 (390)
Q Consensus 285 ~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~ 362 (390)
.. |+|++ ++++.. .+|+++.++|+|||++++.++... ...++
T Consensus 164 ~~~~D~v~~-----~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~ 207 (258)
T 2pwy_A 164 EAAYDGVAL-----DLMEPW--KVLEKAALALKPDRFLVAYLPNIT-----------------------------QVLEL 207 (258)
T ss_dssp TTCEEEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEESCHH-----------------------------HHHHH
T ss_pred CCCcCEEEE-----CCcCHH--HHHHHHHHhCCCCCEEEEEeCCHH-----------------------------HHHHH
Confidence 53 99987 345544 789999999999999999775310 12345
Q ss_pred HHHHHHCCCCeeEEEe
Q 016366 363 TELAIAAGFKGINFAS 378 (390)
Q Consensus 363 ~~ll~~aGf~~~~~~~ 378 (390)
.+.++++||..+++..
T Consensus 208 ~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 208 VRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHTTTTEEEEEEEE
T ss_pred HHHHHHCCCceEEEEE
Confidence 6667778988776654
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.7e-11 Score=106.45 Aligned_cols=150 Identities=17% Similarity=0.124 Sum_probs=98.8
Q ss_pred HHHHHHhh--ccCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHH----HhhCCCCCCceEEECCCCCC-----
Q 016366 216 ERILEHYE--GFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHV----VQDAPSYAGVEHVGGNMFES----- 282 (390)
Q Consensus 216 ~~l~~~~~--~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~----~~~a~~~~rv~~~~gd~~~~----- 282 (390)
..++..++ .+.++.+|||+|||+|.++..+++. .|+.+++++|+ +.+ ++.++++.++.++.+|+..+
T Consensus 63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~ 142 (232)
T 3id6_C 63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKS 142 (232)
T ss_dssp HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTT
T ss_pred HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhc
Confidence 34444443 1567889999999999999999986 46789999998 655 44555568899999999763
Q ss_pred CCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHH
Q 016366 283 VPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKE 361 (390)
Q Consensus 283 ~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e 361 (390)
+... |+|++.... +++ ...++..+++.|||||++++...... .|... .. .-..++
T Consensus 143 ~~~~~D~I~~d~a~---~~~-~~il~~~~~~~LkpGG~lvisik~~~--------------~d~t~-----~~-~e~~~~ 198 (232)
T 3id6_C 143 VVENVDVLYVDIAQ---PDQ-TDIAIYNAKFFLKVNGDMLLVIKARS--------------IDVTK-----DP-KEIYKT 198 (232)
T ss_dssp TCCCEEEEEECCCC---TTH-HHHHHHHHHHHEEEEEEEEEEEC---------------------C-----CS-SSSTTH
T ss_pred cccceEEEEecCCC---hhH-HHHHHHHHHHhCCCCeEEEEEEccCC--------------cccCC-----CH-HHHHHH
Confidence 1223 999887543 333 23345666779999999998732211 11100 01 111234
Q ss_pred HHHHHHHCCCCeeEEEecCC---ceeEEEEe
Q 016366 362 YTELAIAAGFKGINFASCVC---NLYIMEFF 389 (390)
Q Consensus 362 ~~~ll~~aGf~~~~~~~~~~---~~~vi~~~ 389 (390)
..+.|+++||++.+...+.. .+.++.++
T Consensus 199 ~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 199 EVEKLENSNFETIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp HHHHHHHTTEEEEEEEECTTTCSSCEEEEEE
T ss_pred HHHHHHHCCCEEEEEeccCCCcCceEEEEEE
Confidence 56677899999999988853 35555554
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-11 Score=108.42 Aligned_cols=102 Identities=12% Similarity=0.159 Sum_probs=80.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-C-CCC-C-cEEEe
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S-VPE-G-DAILM 291 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~-~p~-~-D~i~~ 291 (390)
..+..+|||+|||+|.++..+++++ |+.+++++|+ +.+++.+++. ++++++++|+.+ + ... . |+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4567899999999999999999986 6779999998 7888887753 579999999876 3 333 3 99998
Q ss_pred cccccc-------CChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 292 KWILHC-------WDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 292 ~~vlh~-------~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
...+.. .......++++++.+.|+|||++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 865511 12234557999999999999999988754
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.27 E-value=4.8e-12 Score=114.42 Aligned_cols=120 Identities=15% Similarity=0.160 Sum_probs=92.9
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCC----CC-cEEEec
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVP----EG-DAILMK 292 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p----~~-D~i~~~ 292 (390)
.+..+|||||||+|..+..++...|+.+++++|+ +.+++.+++. ++|+++++|+.+ +.+ .. |+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4568999999999999999999889999999998 7788877652 479999999876 532 23 999987
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
.+ .+ ...+++.+++.|+|||++++...... . ...+++.+.+++.||+
T Consensus 149 ~~----~~--~~~~l~~~~~~LkpgG~l~~~~g~~~-------~--------------------~~~~~~~~~l~~~g~~ 195 (240)
T 1xdz_A 149 AV----AR--LSVLSELCLPLVKKNGLFVALKAASA-------E--------------------EELNAGKKAITTLGGE 195 (240)
T ss_dssp CC----SC--HHHHHHHHGGGEEEEEEEEEEECC-C-------H--------------------HHHHHHHHHHHHTTEE
T ss_pred cc----CC--HHHHHHHHHHhcCCCCEEEEEeCCCc-------h--------------------HHHHHHHHHHHHcCCe
Confidence 63 33 44899999999999999988632110 0 0134567889999999
Q ss_pred eeEEEe
Q 016366 373 GINFAS 378 (390)
Q Consensus 373 ~~~~~~ 378 (390)
+.++..
T Consensus 196 ~~~~~~ 201 (240)
T 1xdz_A 196 LENIHS 201 (240)
T ss_dssp EEEEEE
T ss_pred EeEEEE
Confidence 887754
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.4e-12 Score=119.93 Aligned_cols=109 Identities=22% Similarity=0.262 Sum_probs=87.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---------CCceEEECCCCCCCCCC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFESVPEG 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---------~rv~~~~gd~~~~~p~~ 286 (390)
.+++.++ .....+|||+|||+|.++..+++++|..+++++|+ +.+++.++++ .+++++.+|++++++..
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 4566666 44558999999999999999999999999999998 7888887752 25888999999876653
Q ss_pred --cEEEecccccc---CChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 287 --DAILMKWILHC---WDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 287 --D~i~~~~vlh~---~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|+|+++-.+|+ ..+....++|+++++.|+|||+++++...
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 99999999985 34555568999999999999999996543
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.9e-13 Score=121.40 Aligned_cols=145 Identities=8% Similarity=0.011 Sum_probs=96.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC----CCC----CC-cEE
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE----SVP----EG-DAI 289 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~----~~p----~~-D~i 289 (390)
+..+|||+|||+|.++..++++.|+.+++++|+ +.+++.|+++ ++++++++|+.+ +++ .. |+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 467999999999999999999988899999998 8888887752 469999999643 444 23 999
Q ss_pred EeccccccCCh-------------hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcc
Q 016366 290 LMKWILHCWDD-------------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE 356 (390)
Q Consensus 290 ~~~~vlh~~~d-------------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 356 (390)
+++-.+|.... +....++.+++++|+|||.+.+++.+.... ... .....+.. ...+..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~------~~~--l~~~g~~~-~~~~~~ 215 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS------LQL--KKRLRWYS-CMLGKK 215 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH------HHH--GGGBSCEE-EEESST
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH------Hhc--ccceEEEE-ECCCCh
Confidence 99876665431 112356788999999999988876543210 000 00000111 112444
Q ss_pred cCHHHHHHHHHHCCCCeeEEEecC
Q 016366 357 RTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 357 ~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
.+.+++.++++++||+.+++....
T Consensus 216 ~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 216 CSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp TSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCceEEEEEe
Confidence 556899999999999998877664
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=105.57 Aligned_cols=121 Identities=10% Similarity=0.086 Sum_probs=93.1
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC--C
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE--G 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~--~ 286 (390)
..+++.++ ..+..+|||+|||+|.++..+++ +..+++++|+ +.+++.+++. ++++++.+|+.++++. .
T Consensus 25 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 101 (183)
T 2yxd_A 25 AVSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEF 101 (183)
T ss_dssp HHHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCC
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCC
Confidence 34455555 56678999999999999999998 7788999998 7888877753 5799999999875553 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
|+|++..+ .+ ...+++++++. |||++++.+.... +..++.+++
T Consensus 102 D~i~~~~~----~~--~~~~l~~~~~~--~gG~l~~~~~~~~-----------------------------~~~~~~~~l 144 (183)
T 2yxd_A 102 NKAFIGGT----KN--IEKIIEILDKK--KINHIVANTIVLE-----------------------------NAAKIINEF 144 (183)
T ss_dssp SEEEECSC----SC--HHHHHHHHHHT--TCCEEEEEESCHH-----------------------------HHHHHHHHH
T ss_pred cEEEECCc----cc--HHHHHHHHhhC--CCCEEEEEecccc-----------------------------cHHHHHHHH
Confidence 99999988 22 34889999988 9999998764310 145568889
Q ss_pred HHCCCCeeEE
Q 016366 367 IAAGFKGINF 376 (390)
Q Consensus 367 ~~aGf~~~~~ 376 (390)
+++||.+..+
T Consensus 145 ~~~g~~~~~~ 154 (183)
T 2yxd_A 145 ESRGYNVDAV 154 (183)
T ss_dssp HHTTCEEEEE
T ss_pred HHcCCeEEEE
Confidence 9999876654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=113.91 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=78.2
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCCcEEEeccccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEGDAILMKWILH 296 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~D~i~~~~vlh 296 (390)
..++.+|||||||+|.++..++.+.++.+++++|+ +.+++.|++. ++|+++++|+.+ +-...|+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence 67889999999999988777667778999999998 8899988863 689999999987 4112399998654
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 297 CWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 297 ~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.++ ..++++++++.|||||++++.+
T Consensus 198 -~~d--~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 198 -AEP--KRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp -CSC--HHHHHHHHHHHCCTTCEEEEEE
T ss_pred -ccC--HHHHHHHHHHHcCCCcEEEEEc
Confidence 344 3489999999999999999865
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.8e-12 Score=113.50 Aligned_cols=99 Identities=10% Similarity=0.178 Sum_probs=77.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCCC----CCCC--cEEEecc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFES----VPEG--DAILMKW 293 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~~----~p~~--D~i~~~~ 293 (390)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++++|+.+. ++.+ |.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 567999999999999999999999999999998 778777654 25799999998762 5554 9998875
Q ss_pred ccccCChhHH------HHHHHHHHHhCCCCcEEEEEec
Q 016366 294 ILHCWDDDHC------LRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 294 vlh~~~d~~~------~~~L~~~~~~L~pgG~lli~e~ 325 (390)
...+...... ..+++.+++.|+|||++++...
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 4432222111 1589999999999999998654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-11 Score=110.31 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=77.1
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCC-C--CCCC--cEEEeccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-S--VPEG--DAILMKWI 294 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~--~p~~--D~i~~~~v 294 (390)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ + ++.+ |.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 457899999999999999999999999999998 778887764 2679999999986 3 5543 98876544
Q ss_pred cccCChh------HHHHHHHHHHHhCCCCcEEEEEe
Q 016366 295 LHCWDDD------HCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 295 lh~~~d~------~~~~~L~~~~~~L~pgG~lli~e 324 (390)
..+.... ....+|+++++.|+|||.+++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 3221110 02478999999999999998864
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=112.90 Aligned_cols=97 Identities=18% Similarity=0.224 Sum_probs=78.3
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCC--cEEEeccccccCChhH
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH 302 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~ 302 (390)
+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++...-.++.+|+.+ +++.+ |+|++.++++++.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 5679999999999999999987 457899998 8888887764222389999987 66554 999998876666332
Q ss_pred HHHHHHHHHHhCCCCcEEEEEecc
Q 016366 303 CLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 303 ~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
...+|++++++|+|||++++..+.
T Consensus 131 ~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 131 KDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 558999999999999999987654
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.2e-12 Score=119.96 Aligned_cols=110 Identities=18% Similarity=0.271 Sum_probs=88.9
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCCC-cE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEG-DA 288 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~~-D~ 288 (390)
..+++.++ .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ ..++++.+|+.+..+.. |+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 44566664 34467999999999999999999999889999998 7788877752 34778999998744444 99
Q ss_pred EEeccccccC---ChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 289 ILMKWILHCW---DDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 289 i~~~~vlh~~---~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|+++.++|+. ..+...++|++++++|+|||+++++...
T Consensus 265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred EEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 9999999862 4455679999999999999999997764
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.2e-11 Score=110.67 Aligned_cols=149 Identities=13% Similarity=0.094 Sum_probs=97.4
Q ss_pred HHHHHHhhccC-CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhh-CCCCCCceEEE-CCCCC----CCCC--
Q 016366 216 ERILEHYEGFQ-NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD-APSYAGVEHVG-GNMFE----SVPE-- 285 (390)
Q Consensus 216 ~~l~~~~~~~~-~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~-a~~~~rv~~~~-gd~~~----~~p~-- 285 (390)
..+++.+. .. ...+|||||||+|.++..+++. +..+++++|+ +.|++. +++.+++.... .|+.. .+|.
T Consensus 74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~ 151 (291)
T 3hp7_A 74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL 151 (291)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred HHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence 45566665 33 4569999999999999998887 4568999998 778877 34445655443 34322 2343
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe-cccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHH
Q 016366 286 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN-SIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 364 (390)
Q Consensus 286 ~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ 364 (390)
.|+|++..++|++ ..+|.+++++|+|||++++.. +.+.-.+. .........|- ....++.+++.+
T Consensus 152 fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~--~~~~~G~vrd~-------~~~~~~~~~v~~ 217 (291)
T 3hp7_A 152 PSFASIDVSFISL-----NLILPALAKILVDGGQVVALVKPQFEAGRE--QIGKNGIVRES-------SIHEKVLETVTA 217 (291)
T ss_dssp CSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCGG--GCC-CCCCCCH-------HHHHHHHHHHHH
T ss_pred CCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccChh--hcCCCCccCCH-------HHHHHHHHHHHH
Confidence 3999998888865 378999999999999998852 21111100 00000000000 011235789999
Q ss_pred HHHHCCCCeeEEEecC
Q 016366 365 LAIAAGFKGINFASCV 380 (390)
Q Consensus 365 ll~~aGf~~~~~~~~~ 380 (390)
+++++||++..+...+
T Consensus 218 ~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 218 FAVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHHTTEEEEEEEECS
T ss_pred HHHHCCCEEEEEEECC
Confidence 9999999998887654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.3e-11 Score=105.94 Aligned_cols=129 Identities=13% Similarity=0.046 Sum_probs=100.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC---CcEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE---GDAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~---~D~i~~~~v 294 (390)
+++.+|+|||||+|.++..+++.+|..+++++|+ +.+++.|+++ ++|+++.+|.+++++. .|+|+...+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 3567999999999999999999999889999998 7888887752 4799999999886652 499887654
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCee
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 374 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 374 (390)
..+....+|..+.+.|+|+|++++.-.. ..+.++++|.+.||.++
T Consensus 94 ----Gg~~i~~Il~~~~~~L~~~~~lVlq~~~-------------------------------~~~~vr~~L~~~Gf~i~ 138 (225)
T 3kr9_A 94 ----GGRLIARILEEGLGKLANVERLILQPNN-------------------------------REDDLRIWLQDHGFQIV 138 (225)
T ss_dssp ----CHHHHHHHHHHTGGGCTTCCEEEEEESS-------------------------------CHHHHHHHHHHTTEEEE
T ss_pred ----ChHHHHHHHHHHHHHhCCCCEEEEECCC-------------------------------CHHHHHHHHHHCCCEEE
Confidence 3344678999999999999998862220 25667899999999998
Q ss_pred EEEec---CCceeEEEEe
Q 016366 375 NFASC---VCNLYIMEFF 389 (390)
Q Consensus 375 ~~~~~---~~~~~vi~~~ 389 (390)
+..-+ .-++.++.+.
T Consensus 139 ~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 139 AESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 87543 2345566553
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.2e-11 Score=109.50 Aligned_cols=124 Identities=9% Similarity=0.117 Sum_probs=93.5
Q ss_pred cC-CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-C--CCC-C-cEEE
Q 016366 225 FQ-NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S--VPE-G-DAIL 290 (390)
Q Consensus 225 ~~-~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~--~p~-~-D~i~ 290 (390)
.. +..+|||+|||+|.++..++++.+. +++++|+ +.+++.++++ ++++++++|+.+ + ++. . |+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 6789999999999999999999775 8999998 7888877752 479999999987 3 333 3 9999
Q ss_pred eccccccC------------------ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcC
Q 016366 291 MKWILHCW------------------DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDG 352 (390)
Q Consensus 291 ~~~vlh~~------------------~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 352 (390)
++-.++.. .......+++.+.+.|+|||+++++.. .
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~----------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---P----------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---T-----------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---H-----------------------
Confidence 97554332 113345799999999999999998421 1
Q ss_pred CCcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 353 GGRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 353 ~g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
....++.+++++.||...++.++
T Consensus 179 ----~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 ----ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp ----TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred ----HHHHHHHHHHHHCCCceEEEEEe
Confidence 02456677888899988877655
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.8e-11 Score=103.93 Aligned_cols=106 Identities=18% Similarity=0.199 Sum_probs=80.6
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC--CCeEEEecchHHHhhCCCCCCceEEECCCCC-C---------
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP--QIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-S--------- 282 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p--~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~-~--------- 282 (390)
..++.+.+..+.+..+|||||||+|.++..+++++| +.+++++|+..+ ...++++++++|+.+ +
T Consensus 10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~~~~~~~~~~~ 85 (201)
T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKDNMNNIKNINY 85 (201)
T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTTSSCCC-----
T ss_pred HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccchhhhhhccccc
Confidence 345566655345678999999999999999999998 689999998543 124679999999987 4
Q ss_pred ----------------CCC-C-cEEEeccccccCC----hhH-----HHHHHHHHHHhCCCCcEEEEEe
Q 016366 283 ----------------VPE-G-DAILMKWILHCWD----DDH-----CLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 283 ----------------~p~-~-D~i~~~~vlh~~~----d~~-----~~~~L~~~~~~L~pgG~lli~e 324 (390)
++. . |+|++...+|+.. +.. ..++|++++++|+|||++++..
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 343 3 9999988877632 221 1248999999999999998744
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=102.62 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=83.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecchHHHhhCCCCCCceEEECCCCC-C--------CCCC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-S--------VPEG 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~-~--------~p~~ 286 (390)
.+++.+....+..+|||+|||+|.++..+++.+ |+.+++++|+..+++ .++++++.+|+.+ + ++..
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCC
Confidence 455555434567799999999999999999984 778999999844433 2679999999988 5 5543
Q ss_pred --cEEEeccccccCChhH---------HHHHHHHHHHhCCCCcEEEEEecc
Q 016366 287 --DAILMKWILHCWDDDH---------CLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~---------~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|+|++..++|+..... ...+++++.+.|+|||.+++.+..
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999999998776441 148899999999999999987654
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=113.72 Aligned_cols=128 Identities=17% Similarity=0.234 Sum_probs=97.6
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE 285 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~ 285 (390)
...++..++ ..+..+|||+|||+|.++..++++ .|..+++++|+ +.+++.++++ ++++++.+|+.+.++.
T Consensus 101 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 101 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 345666666 677789999999999999999998 68899999998 7888877653 4799999999876654
Q ss_pred -C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHH
Q 016366 286 -G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT 363 (390)
Q Consensus 286 -~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~ 363 (390)
. |+|++. .++.. .+|+++.++|+|||++++.+.... ...++.
T Consensus 180 ~~~D~V~~~-----~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~-----------------------------~~~~~~ 223 (277)
T 1o54_A 180 KDVDALFLD-----VPDPW--NYIDKCWEALKGGGRFATVCPTTN-----------------------------QVQETL 223 (277)
T ss_dssp CSEEEEEEC-----CSCGG--GTHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred CccCEEEEC-----CcCHH--HHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHH
Confidence 3 999873 45443 789999999999999998764310 123455
Q ss_pred HHHHHCCCCeeEEEec
Q 016366 364 ELAIAAGFKGINFASC 379 (390)
Q Consensus 364 ~ll~~aGf~~~~~~~~ 379 (390)
+.++++||..+++...
T Consensus 224 ~~l~~~gf~~~~~~~~ 239 (277)
T 1o54_A 224 KKLQELPFIRIEVWES 239 (277)
T ss_dssp HHHHHSSEEEEEEECC
T ss_pred HHHHHCCCceeEEEEE
Confidence 6677788887766543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=110.95 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=89.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCc--------eEEE-CCCCCCCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGV--------EHVG-GNMFESVP 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv--------~~~~-gd~~~~~p 284 (390)
..+++.++......+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. +++ ++.. .|+..+.+
T Consensus 26 ~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (232)
T 3opn_A 26 EKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRP 104 (232)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCC
T ss_pred HHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCC
Confidence 3455666522345699999999999999999883 348999998 7787775542 333 2222 22222111
Q ss_pred CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHH
Q 016366 285 EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 364 (390)
Q Consensus 285 ~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ 364 (390)
|.+.+..++..+ ..+|++++++|+|||++++.. .+. ...........-....+.....+.+++.+
T Consensus 105 --d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~------~e~~~~~~~~~G~~~d~~~~~~~~~~l~~ 169 (232)
T 3opn_A 105 --SFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQ------FEAGREQVGKNGIIRDPKVHQMTIEKVLK 169 (232)
T ss_dssp --SEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHH------HHSCHHHHC-CCCCCCHHHHHHHHHHHHH
T ss_pred --CEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--Ccc------cccCHHHhCcCCeecCcchhHHHHHHHHH
Confidence 445455454443 478999999999999999853 110 00000000000000000011236889999
Q ss_pred HHHHCCCCeeEEEecC
Q 016366 365 LAIAAGFKGINFASCV 380 (390)
Q Consensus 365 ll~~aGf~~~~~~~~~ 380 (390)
+++++||++..+...+
T Consensus 170 ~l~~aGf~v~~~~~~p 185 (232)
T 3opn_A 170 TATQLGFSVKGLTFSP 185 (232)
T ss_dssp HHHHHTEEEEEEEECS
T ss_pred HHHHCCCEEEEEEEcc
Confidence 9999999998886554
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-11 Score=108.14 Aligned_cols=99 Identities=16% Similarity=0.098 Sum_probs=78.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCC-------C-Cc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP-------E-GD 287 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p-------~-~D 287 (390)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.++++ ++++++.+|+.+.++ . .|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 34678999999999999999999998 789999998 7788877642 469999999865221 2 39
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
+|++.... .....+++++.+.|+|||++++.+...+
T Consensus 136 ~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 136 FIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp EEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred EEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 99876542 2345899999999999998887666543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.5e-11 Score=106.02 Aligned_cols=129 Identities=14% Similarity=0.027 Sum_probs=101.4
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC---CcEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE---GDAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~---~D~i~~~~v 294 (390)
+++.+|+|||||+|.++..+++..|..+++++|+ +.+++.|+++ ++|+++.+|.++.++. .|+|+..++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 3568999999999999999999998888999998 8888887752 5799999999984442 399987665
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCee
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 374 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 374 (390)
- .+-...+|....+.|+++|+|++.-.. ..+.+++||.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~l~~~~~lIlqp~~-------------------------------~~~~lr~~L~~~Gf~i~ 144 (230)
T 3lec_A 100 G----GRLIADILNNDIDKLQHVKTLVLQPNN-------------------------------REDDLRKWLAANDFEIV 144 (230)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHHHHHHHHTTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCcCCEEEEECCC-------------------------------ChHHHHHHHHHCCCEEE
Confidence 4 355678999999999999988863311 26678999999999999
Q ss_pred EEEecC---CceeEEEEe
Q 016366 375 NFASCV---CNLYIMEFF 389 (390)
Q Consensus 375 ~~~~~~---~~~~vi~~~ 389 (390)
+..-+. -++.|+.+.
T Consensus 145 ~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 145 AEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEC--CEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 876443 455566654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.21 E-value=3.3e-11 Score=109.56 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=84.6
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhh--CCCCeEEEecc-hHHHhhCCCC---C-------C------------
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSK--YPQIKAVNFDL-PHVVQDAPSY---A-------G------------ 271 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~--~p~~~~~~~Dl-~~~~~~a~~~---~-------r------------ 271 (390)
.+++.++ .....+|||+|||+|.++..+++. .+..+++++|+ +.+++.|++. . +
T Consensus 42 ~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 42 RALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG 120 (250)
T ss_dssp HHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence 3444333 235679999999999999999998 77788999998 8888887742 2 2
Q ss_pred -------------ce-------------EEECCCCCCC------CC-C-cEEEeccccccCCh-------hHHHHHHHHH
Q 016366 272 -------------VE-------------HVGGNMFESV------PE-G-DAILMKWILHCWDD-------DHCLRILKNC 310 (390)
Q Consensus 272 -------------v~-------------~~~gd~~~~~------p~-~-D~i~~~~vlh~~~d-------~~~~~~L~~~ 310 (390)
++ ++++|++++. +. . |+|+++..++...+ +....+++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 67 9999998854 33 3 99999887766543 5567899999
Q ss_pred HHhCCCCcEEEEEecc
Q 016366 311 YKAVPGNGKVIVMNSI 326 (390)
Q Consensus 311 ~~~L~pgG~lli~e~~ 326 (390)
+++|+|||+++++...
T Consensus 201 ~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 201 ASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHSCTTCEEEEEESS
T ss_pred HHhcCCCcEEEEeCcc
Confidence 9999999999985543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-11 Score=109.01 Aligned_cols=100 Identities=13% Similarity=0.275 Sum_probs=74.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCC------------CCCCceEEECCCCC--C--CCCC--
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP------------SYAGVEHVGGNMFE--S--VPEG-- 286 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~------------~~~rv~~~~gd~~~--~--~p~~-- 286 (390)
....+|||||||+|.++..+++.+|+..++++|+ +.+++.|+ ...+|+++.+|+.+ + ++.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567899999999999999999999999999998 77776543 23689999999986 2 4444
Q ss_pred cEEEeccccccCCh--hH----HHHHHHHHHHhCCCCcEEEEEec
Q 016366 287 DAILMKWILHCWDD--DH----CLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 287 D~i~~~~vlh~~~d--~~----~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|.|++...-.+... .. ...+|++++++|+|||.|++...
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 88876543222110 00 13699999999999999988643
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.20 E-value=7.2e-11 Score=115.07 Aligned_cols=112 Identities=13% Similarity=0.191 Sum_probs=85.9
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhC-------CC--------CCCceEEECC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA-------PS--------YAGVEHVGGN 278 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a-------~~--------~~rv~~~~gd 278 (390)
+..+++.+. ..+..+|||||||+|.++..+++.++..+++++|+ +.+++.| ++ .++|+++.+|
T Consensus 231 v~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD 309 (433)
T 1u2z_A 231 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309 (433)
T ss_dssp HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence 345566665 67788999999999999999999888778999998 6666655 42 2589999986
Q ss_pred CCC-C--C---CC-CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCC
Q 016366 279 MFE-S--V---PE-GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI 330 (390)
Q Consensus 279 ~~~-~--~---p~-~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 330 (390)
.+. + + .. .|+|+++++++. ++...+|+++.+.|+|||++++.+.+.+..
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn~~l~~---~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred ccccccccccccCCCCEEEEeCcccc---ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 543 2 2 12 399999877732 345578999999999999999998776654
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=112.88 Aligned_cols=121 Identities=14% Similarity=0.058 Sum_probs=93.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCC----CC-cEEEec
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVP----EG-DAILMK 292 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p----~~-D~i~~~ 292 (390)
....+|||||||+|..+..++..+|+.+++++|. +.+++.+++. .+|+++++|+++ +.. .. |+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4568999999999999999999999999999998 7788877652 569999999977 432 23 999987
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
.+ .+ ...+++.+.+.|+|||++++....... . ...++.+.+++.||+
T Consensus 159 a~----~~--~~~ll~~~~~~LkpgG~l~~~~g~~~~-------~--------------------e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 159 AV----AP--LCVLSELLLPFLEVGGAAVAMKGPRVE-------E--------------------ELAPLPPALERLGGR 205 (249)
T ss_dssp SS----CC--HHHHHHHHGGGEEEEEEEEEEECSCCH-------H--------------------HHTTHHHHHHHHTEE
T ss_pred Cc----CC--HHHHHHHHHHHcCCCeEEEEEeCCCcH-------H--------------------HHHHHHHHHHHcCCe
Confidence 54 22 248899999999999999875532100 0 123456777888999
Q ss_pred eeEEEec
Q 016366 373 GINFASC 379 (390)
Q Consensus 373 ~~~~~~~ 379 (390)
+.++.++
T Consensus 206 ~~~~~~~ 212 (249)
T 3g89_A 206 LGEVLAL 212 (249)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9888755
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-11 Score=116.16 Aligned_cols=105 Identities=19% Similarity=0.186 Sum_probs=85.0
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCCCC-c
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-D 287 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~-D 287 (390)
.+++.+. ..+..+|||||||+|.++..++++ +..+++++|...+++.+++. ++|+++.+|+.+ +.+.. |
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D 118 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 118 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence 4555555 456789999999999999998886 55689999985576666542 679999999988 66655 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
+|++..+++++..+.....+.++++.|+|||++++.
T Consensus 119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 119 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 999999998887776778899999999999998853
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5.8e-11 Score=109.81 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=92.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC-C-cEEEecccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMKWIL 295 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~-~-D~i~~~~vl 295 (390)
.++.+|||+|||+|.++..+++..+. +++++|+ +.+++.++++ ++++++++|+++..+. . |+|++....
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence 45789999999999999999999876 8999998 8888877752 4599999999984333 3 999885432
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
. ...+++++.+.|+|||++++.+...... ......+++.+.++++||++..
T Consensus 203 ----~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 203 ----R--THEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ----S--GGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred ----h--HHHHHHHHHHHCCCCeEEEEEEeecccc-----------------------ccccHHHHHHHHHHHcCCeeEE
Confidence 1 2478999999999999999887753210 0012467788999999998766
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.2e-11 Score=101.80 Aligned_cols=100 Identities=11% Similarity=-0.028 Sum_probs=80.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-C--CC-CC-cEEEecc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VP-EG-DAILMKW 293 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~--~p-~~-D~i~~~~ 293 (390)
.+..+|||+|||+|.++..++++ +..+++++|+ +.+++.++++ ++++++++|+.+ . ++ .. |+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35679999999999999988774 4567899998 8888887753 589999999976 2 32 23 9999998
Q ss_pred ccccCChhHHHHHHHHHHH--hCCCCcEEEEEeccc
Q 016366 294 ILHCWDDDHCLRILKNCYK--AVPGNGKVIVMNSIV 327 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~--~L~pgG~lli~e~~~ 327 (390)
.+|+. .+...++++.+.+ .|+|||++++.....
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 87653 3456789999999 999999999876553
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.9e-11 Score=105.18 Aligned_cols=100 Identities=14% Similarity=0.174 Sum_probs=80.6
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCCCCC-C-C
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFESVP-E-G 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~~~p-~-~ 286 (390)
..+++.+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+..+ . .
T Consensus 67 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (210)
T 3lbf_A 67 ARMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP 143 (210)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence 34455555 667889999999999999999998 567888888 888887765 2579999999987433 2 3
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|+|++..++|++++ .+++.|+|||++++....
T Consensus 144 ~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 144 FDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred ccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 99999999999886 467899999999986654
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.4e-11 Score=105.94 Aligned_cols=91 Identities=19% Similarity=0.221 Sum_probs=75.1
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC-C-cEEEecccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G-DAILMKWILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~-~-D~i~~~~vlh~ 297 (390)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+..+. . |+|++..+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~--- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF--- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS---
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc---
Confidence 367999999999999999999999999999998 7788777642 4599999999884343 3 99997543
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.+ ...+++++++.|+|||++++.
T Consensus 142 -~~--~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 142 -AS--LNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp -SS--HHHHHHHHTTSEEEEEEEEEE
T ss_pred -CC--HHHHHHHHHHhcCCCcEEEEE
Confidence 22 348999999999999999986
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.2e-11 Score=119.82 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=86.6
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~ 286 (390)
...+++.+. ..+..+|||||||+|.++..+++ .+..+++++|+..+++.|++. ++|+++.+|+++ +++..
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 345566555 45668999999999999998887 577899999995577766642 689999999998 66655
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli 322 (390)
|+|++..++|++.++.....+.++++.|+|||++++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 999998888888777777889999999999999885
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.16 E-value=6.1e-11 Score=105.00 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=82.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCC-C-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-E- 285 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p-~- 285 (390)
..+++.+. ..+..+|||||||+|.++..+++.. |+.+++++|. +.+++.+++. ++++++.+|+..+++ .
T Consensus 67 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 67 GMMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred HHHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence 34555555 5677899999999999999999987 6688999998 7888877752 579999999866554 2
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 286 G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 286 ~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
. |+|++..++|++++ ++.+.|+|||++++...
T Consensus 146 ~fD~v~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 146 PYDRIYTTAAGPKIPE--------PLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp CEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEES
T ss_pred CeeEEEECCchHHHHH--------HHHHHcCCCcEEEEEEC
Confidence 3 99999999998873 67889999999998754
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=110.96 Aligned_cols=103 Identities=18% Similarity=0.242 Sum_probs=78.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCCC-C-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPE-G- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p~-~- 286 (390)
.+.+.+. ..+..+|||||||+|.++..++++ +..+++++|+..+++.+++. ++++++.+|+.+ +++. .
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 3444444 556789999999999999999887 45689999985587777652 689999999998 6774 3
Q ss_pred cEEEeccccccC-ChhHHHHHHHHHHHhCCCCcEEE
Q 016366 287 DAILMKWILHCW-DDDHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 287 D~i~~~~vlh~~-~d~~~~~~L~~~~~~L~pgG~ll 321 (390)
|+|++..+.+.+ .......+|+++++.|+|||+++
T Consensus 133 D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 133 DVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 999987732222 22345589999999999999987
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-11 Score=108.21 Aligned_cols=100 Identities=12% Similarity=0.212 Sum_probs=79.1
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC---CCC-----CC-
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVP-----EG- 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~---~~p-----~~- 286 (390)
..++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.++++ ++|+++.+|+.+ .++ ..
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 34568999999999999999999864 789999998 8888887762 479999999744 222 23
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|+|++....+++.+. .+++..+ +.|+|||++++.+...
T Consensus 136 D~V~~d~~~~~~~~~--~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 136 DMVFLDHWKDRYLPD--TLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp SEEEECSCGGGHHHH--HHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEEEEcCCcccchHH--HHHHHhc-cccCCCeEEEEeCCCC
Confidence 999999888776543 3678888 9999999988765553
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=104.11 Aligned_cols=129 Identities=16% Similarity=0.108 Sum_probs=99.9
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCC-C--CcEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP-E--GDAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p-~--~D~i~~~~v 294 (390)
+++.+|||||||+|.++..+++..|..+++++|+ +.+++.|+++ ++|+++.+|.++.++ . .|+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 3568999999999999999999998888999998 8888887753 579999999998444 2 499887654
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCee
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 374 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 374 (390)
- .+-...+|....+.|+++++|++.-.. ..+.++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~L~~~~~lIlq~~~-------------------------------~~~~lr~~L~~~Gf~i~ 144 (244)
T 3gnl_A 100 G----GTLIRTILEEGAAKLAGVTKLILQPNI-------------------------------AAWQLREWSEQNNWLIT 144 (244)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHHHHHHHHHTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCCCCEEEEEcCC-------------------------------ChHHHHHHHHHCCCEEE
Confidence 3 355778999999999999998874311 25667999999999997
Q ss_pred EEEec---CCceeEEEEe
Q 016366 375 NFASC---VCNLYIMEFF 389 (390)
Q Consensus 375 ~~~~~---~~~~~vi~~~ 389 (390)
+..-+ .-++.++.+.
T Consensus 145 ~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 145 SEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 65433 3455566553
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.7e-11 Score=107.38 Aligned_cols=98 Identities=18% Similarity=0.263 Sum_probs=79.1
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCC----CC-cEEEe
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP----EG-DAILM 291 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p----~~-D~i~~ 291 (390)
..+..+|||||||+|..+..+++..|+.+++++|+ +.+++.+++. ++|+++.+|+.+.++ .. |+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 34678999999999999999999889999999998 8888877752 489999999987433 23 99986
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 292 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 292 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
.... .....+++++.+.|+|||++++.+...
T Consensus 149 ~~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 149 DAAK-----AQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp ETTS-----SSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred cCcH-----HHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 6432 224579999999999999988755554
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=105.94 Aligned_cols=98 Identities=16% Similarity=0.184 Sum_probs=78.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC---CCCC--C-cEE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVPE--G-DAI 289 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~---~~p~--~-D~i 289 (390)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.++++ ++|+++.+|+.+ ..+. . |+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 44678999999999999999999998 789999998 8888877752 489999999865 2222 3 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 290 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 290 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
++... ......+|+++.+.|+|||+|++.+...
T Consensus 141 ~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 141 FIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp EECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred EECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 88653 3334579999999999999988766654
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.13 E-value=7e-11 Score=112.25 Aligned_cols=104 Identities=15% Similarity=0.214 Sum_probs=79.6
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCCC-----------------CCceEE
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-----------------AGVEHV 275 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~~-----------------~rv~~~ 275 (390)
...++..+. ..+..+|||+|||+|.++..+++. .|+.+++++|+ +.+++.++++ ++++++
T Consensus 94 ~~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 94 INMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 344556565 667789999999999999999998 57789999998 7777776641 579999
Q ss_pred ECCCCCC---CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 276 GGNMFES---VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 276 ~gd~~~~---~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.+|+.+. ++.+ |+|++.. +++. .+++++++.|+|||++++....
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~-----~~~~--~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDM-----LNPH--VTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp ESCTTCCC-------EEEEEECS-----SSTT--TTHHHHGGGEEEEEEEEEEESS
T ss_pred ECChHHcccccCCCCeeEEEECC-----CCHH--HHHHHHHHhcCCCcEEEEEeCC
Confidence 9999873 3443 9998743 2222 4799999999999999987654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-10 Score=103.68 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=76.6
Q ss_pred CcceEEEEcCCccHHHHHHHhh----CCCCeEEEecc-hHHHhhCCC-CCCceEEECCCCCC--CC---C--CcEEEecc
Q 016366 227 NVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFES--VP---E--GDAILMKW 293 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~----~p~~~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~~--~p---~--~D~i~~~~ 293 (390)
++.+|||||||+|..+..+++. .|+.+++++|+ +.+++.++. .++|+++++|+.+. ++ . .|+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 3579999999999999999997 78899999998 888888765 36899999999873 22 2 29998765
Q ss_pred ccccCChhHHHHHHHHHHH-hCCCCcEEEEEec
Q 016366 294 ILHCWDDDHCLRILKNCYK-AVPGNGKVIVMNS 325 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~-~L~pgG~lli~e~ 325 (390)
. |. +...+|+++.+ .|+|||++++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 4 42 24578999997 9999999998665
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.5e-11 Score=107.67 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=78.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---C-----CCC-c
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V-----PEG-D 287 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~-----p~~-D 287 (390)
.++.+|||||||+|..+..+++..| +.+++++|+ +.+++.++++ ++|+++.+|+.+. + +.. |
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 4568999999999999999999886 789999998 7777777652 5899999998762 2 233 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
+|++... ......+|+++.+.|+|||++++.+...+.
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 9987654 233457899999999999999987766543
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=104.46 Aligned_cols=101 Identities=13% Similarity=0.196 Sum_probs=80.9
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----CCceEEECCCCCCCC--CC-
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFESVP--EG- 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~~~p--~~- 286 (390)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .+++++.+|+.+..+ ..
T Consensus 59 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f 135 (231)
T 1vbf_A 59 GIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY 135 (231)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence 345555555 5677899999999999999999986 67888887 7888877653 379999999987443 23
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|+|++..++|++++ ++.+.|+|||++++....
T Consensus 136 D~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 136 DRVVVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEEEESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred cEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 99999999999874 477899999999987653
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8.1e-11 Score=112.43 Aligned_cols=96 Identities=19% Similarity=0.284 Sum_probs=76.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCCCC--cEEEecccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG--DAILMKWIL 295 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~--D~i~~~~vl 295 (390)
.+..+|||||||+|.++..++++ +..+++++|+..+++.|++. ++|+++.+|+.+ ++|.. |+|++..+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 45689999999999999999988 56689999986677777642 459999999998 77743 999997764
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCcEEEE
Q 016366 296 HCW-DDDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 296 h~~-~d~~~~~~L~~~~~~L~pgG~lli 322 (390)
+.+ .......+++.+.++|+|||+++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 443 223345899999999999999873
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5.2e-11 Score=113.80 Aligned_cols=96 Identities=11% Similarity=0.173 Sum_probs=75.9
Q ss_pred CCcceEEEEcCC------ccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCC-------CC-cE
Q 016366 226 QNVERLVDVGGG------FGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVP-------EG-DA 288 (390)
Q Consensus 226 ~~~~~iLDiG~G------~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p-------~~-D~ 288 (390)
.+..+||||||| +|..+..++++ +|+.+++++|+ +.+. ...++|+++++|+.+ +++ .. |+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhhhhhcccCCccE
Confidence 356899999999 67777777765 59999999998 5553 235789999999988 554 33 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|++.. .|++++ ..+.|++++++|||||++++.|...
T Consensus 292 Visdg-sH~~~d--~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 292 VIDDG-SHINAH--VRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp EEECS-CCCHHH--HHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred EEECC-cccchh--HHHHHHHHHHhcCCCeEEEEEeccc
Confidence 99864 566544 4589999999999999999988763
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.11 E-value=5.9e-11 Score=107.66 Aligned_cols=94 Identities=16% Similarity=0.356 Sum_probs=72.9
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC--------------CCCceEEECCCCCC----CCCC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS--------------YAGVEHVGGNMFES----VPEG 286 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--------------~~rv~~~~gd~~~~----~p~~ 286 (390)
....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+. ++.+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4667999999999999999999999999999998 777765532 35799999999863 3333
Q ss_pred --cEEEeccccccCChhHH-----------HHHHHHHHHhCCCCcEEEEEe
Q 016366 287 --DAILMKWILHCWDDDHC-----------LRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~~-----------~~~L~~~~~~L~pgG~lli~e 324 (390)
|.|++. ++++.. ..+++++.++|+|||+|++..
T Consensus 128 ~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 666532 343321 379999999999999999853
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.4e-10 Score=104.40 Aligned_cols=104 Identities=13% Similarity=0.230 Sum_probs=82.9
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCC---------CCCceEEECCCCC-C
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFE-S 282 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~---------~~rv~~~~gd~~~-~ 282 (390)
...++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.+|+.+ +
T Consensus 88 ~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 88 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 345666666 677789999999999999999996 57889999998 778777654 2479999999987 5
Q ss_pred CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 283 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 283 ~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
++.. |+|++ +.++.. .+|+++.++|+|||++++..+.
T Consensus 167 ~~~~~~D~v~~-----~~~~~~--~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 167 LPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCCceeEEEE-----CCcCHH--HHHHHHHHhCCCCCEEEEEeCC
Confidence 5543 99987 234444 7899999999999999997754
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.1e-11 Score=106.05 Aligned_cols=98 Identities=13% Similarity=0.205 Sum_probs=80.1
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCC-----CCC-cEEE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV-----PEG-DAIL 290 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~-----p~~-D~i~ 290 (390)
..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+.. +.. |+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 34567999999999999999999999999999998 7888877653 47999999997632 233 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
+....+ ....+|+++.+.|+|||++++.+...
T Consensus 132 ~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 132 IDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp EEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred ECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 877654 24588999999999999998876543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-10 Score=104.71 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=82.6
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC-
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE- 285 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~- 285 (390)
....+++.+. ..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. ++++++.+|+..+++.
T Consensus 79 ~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (235)
T 1jg1_A 79 MVAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 156 (235)
T ss_dssp HHHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCC
Confidence 3445666665 66778999999999999999999987 78899997 7788877652 4699999998555553
Q ss_pred --CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 286 --GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 286 --~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.|+|++..+++++++ ++.+.|+|||++++....
T Consensus 157 ~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 157 APYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp CCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred CCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEec
Confidence 299999999998874 567899999999986653
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.1e-10 Score=105.23 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=78.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCceEEECCCCC-CCCCC--cEEEeccccccCCh
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDD 300 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d 300 (390)
.+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++. +++.++.+|+.+ +++.+ |+|++.++.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 4567999999999999999999988889999998 8888887763 679999999987 66553 999986653
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
..+++++++|+|||++++.++..
T Consensus 159 ----~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEEEEEEEEEEECT
T ss_pred ----hhHHHHHHhcCCCcEEEEEEcCH
Confidence 34899999999999999987654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-10 Score=109.25 Aligned_cols=102 Identities=19% Similarity=0.279 Sum_probs=81.9
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCC-C-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-E- 285 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p-~- 285 (390)
..+++.+. ..++.+|||||||+|.++..+++..+ +.+++++|+ +.+++.+++. ++++++.+|+.+..+ .
T Consensus 65 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 34555555 66778999999999999999999887 478899998 7888877652 569999999987333 2
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 286 G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 286 ~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
. |+|++..++|+++ +++.+.|+|||++++....
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 3 9999999999887 4567899999999987543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-10 Score=105.99 Aligned_cols=100 Identities=11% Similarity=0.192 Sum_probs=77.0
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----------CCceEEECCCCCC--------CCC
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFES--------VPE 285 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----------~rv~~~~gd~~~~--------~p~ 285 (390)
..+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.++++ ++++++++|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45677999999999999999999999999999998 7777766542 2589999999874 333
Q ss_pred -C-cEEEeccccccC----------------ChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 286 -G-DAILMKWILHCW----------------DDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 286 -~-D~i~~~~vlh~~----------------~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
. |+|+++-.++.. .......+++.+.+.|+|||+++++.
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3 999997433321 12225689999999999999998853
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=103.57 Aligned_cols=131 Identities=11% Similarity=0.063 Sum_probs=99.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCC-CCCC-cEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES-VPEG-DAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~-~p~~-D~i~~~~vlh~ 297 (390)
..+.+|||||||+|-++..++...|+.+++++|+ +.+++.++++ .+.++...|.... .+.. |++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999998 8888887763 4578899999884 4443 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINF 376 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 376 (390)
+.++.....+ ++.++|+|+|.++-.+.-.=..+. .. |... -...|++.+.+.|+.+.++
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs--------~g----m~~~-------Y~~~~e~~~~~~g~~~~~~ 269 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRS--------KG----MFQN-------YSQSFESQARERSCRIQRL 269 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEECC---------------C----HHHH-------HHHHHHHHHHHHTCCEEEE
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCC--------cc----hhhH-------HHHHHHHHHHhcCCceeee
Confidence 9888766667 999999999987765552111110 01 1111 2677899999999855443
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.1e-10 Score=105.19 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=78.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCC-CC-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP-EG- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p-~~- 286 (390)
.+++.++ .....+|||+|||+|.++..+++. |+.+++++|+ +.+++.++++ ++++++++|++++++ ..
T Consensus 114 ~~l~~~~-~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~ 191 (284)
T 1nv8_A 114 LALELIR-KYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFA 191 (284)
T ss_dssp HHHHHHH-HHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTT
T ss_pred HHHHHhc-ccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccC
Confidence 3444433 234579999999999999999999 9999999998 8888887752 369999999988543 45
Q ss_pred --cEEEec------------cccccCChh------HHHHHHHHHH-HhCCCCcEEEE
Q 016366 287 --DAILMK------------WILHCWDDD------HCLRILKNCY-KAVPGNGKVIV 322 (390)
Q Consensus 287 --D~i~~~------------~vlh~~~d~------~~~~~L~~~~-~~L~pgG~lli 322 (390)
|+|+++ .+. +-|.. +...+++++. +.|+|||++++
T Consensus 192 ~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 192 SIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp TCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 999996 333 22321 1227899999 99999999886
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.07 E-value=5.5e-11 Score=106.05 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=78.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---CC-----CC-c
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP-----EG-D 287 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~p-----~~-D 287 (390)
.++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|+.+. .+ .. |
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 4567999999999999999999987 789999998 7788877652 5699999998652 11 33 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
+|++... ......+++++++.|+|||++++.+...+
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 9986543 23345899999999999999998776643
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.2e-10 Score=108.53 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=80.7
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCC-CC-cEEEecccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVP-EG-DAILMKWILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p-~~-D~i~~~~vlh~ 297 (390)
+..+|||+|||+|.++..++++ +.+++++|+ +.+++.++++ .+++++.+|+.+ ..+ .. |+|+++..+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999998 458888887 7888887753 258999999998 444 23 99999999987
Q ss_pred ---CChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 298 ---WDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 298 ---~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
...+...++++++++.|+|||+++++...
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 33456679999999999999999987543
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-10 Score=108.95 Aligned_cols=98 Identities=14% Similarity=0.246 Sum_probs=78.0
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC---CCCC-C-cEEEecccc
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE---SVPE-G-DAILMKWIL 295 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~---~~p~-~-D~i~~~~vl 295 (390)
..+|||||||+|.++..+++.+|+++++++|+ +.+++.++++ +|++++.+|..+ ..+. . |+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 34999999999999999999999999999998 8899888752 689999999875 2333 3 999986544
Q ss_pred ccCChhH--HHHHHHHHHHhCCCCcEEEEEec
Q 016366 296 HCWDDDH--CLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 296 h~~~d~~--~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
+...... ...+++.++++|+|||++++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 4322221 14899999999999999887654
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-10 Score=111.44 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=79.7
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCCCC-cEEEecccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWIL 295 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~-D~i~~~~vl 295 (390)
..+..+|||||||+|.++..++++. ..+++++|+..+++.+++. ++|+++.+|+.+ +++.. |+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 4567899999999999999999874 3488999987777776642 569999999988 66644 999997766
Q ss_pred ccCCh-hHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 296 HCWDD-DHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 296 h~~~d-~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|.... .....+++.+++.|+|||++++.+..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 65532 33557999999999999999875543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.4e-10 Score=102.13 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=72.7
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc--hHHHhhCCCC----------------CCceEEECCCCCC---C
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDAPSY----------------AGVEHVGGNMFES---V 283 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl--~~~~~~a~~~----------------~rv~~~~gd~~~~---~ 283 (390)
.....+|||||||+|.++..+++.. ..+++++|+ +.+++.++++ ++++++..|..+. +
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3456799999999999999888764 347888887 5777665432 2688886665432 2
Q ss_pred ----C-CC-cEEEeccccccCChhHHHHHHHHHHHhCC---C--CcEEEEE
Q 016366 284 ----P-EG-DAILMKWILHCWDDDHCLRILKNCYKAVP---G--NGKVIVM 323 (390)
Q Consensus 284 ----p-~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~---p--gG~lli~ 323 (390)
+ .. |+|++.+++|+.++. ..+++.++++|+ | ||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~~~--~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQAH--DALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGGGH--HHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccChHHH--HHHHHHHHHHhcccCCCCCCEEEEE
Confidence 2 23 999999999986654 489999999999 9 9987764
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.5e-10 Score=97.69 Aligned_cols=105 Identities=18% Similarity=0.223 Sum_probs=77.4
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC---------CeEEEecchHHHhhCCCCCCceEE-ECCCCC-C---
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ---------IKAVNFDLPHVVQDAPSYAGVEHV-GGNMFE-S--- 282 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~---------~~~~~~Dl~~~~~~a~~~~rv~~~-~gd~~~-~--- 282 (390)
++.+.+..+.+..+|||||||+|.++..++++++. .+++++|+..+ ...++++++ .+|+.+ +
T Consensus 12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTSHHHHH
T ss_pred HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCCHHHHH
Confidence 44555553466789999999999999999999765 78999998542 123679999 999876 3
Q ss_pred -----CCC-C-cEEEecccccc----CChhH-----HHHHHHHHHHhCCCCcEEEEEec
Q 016366 283 -----VPE-G-DAILMKWILHC----WDDDH-----CLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 283 -----~p~-~-D~i~~~~vlh~----~~d~~-----~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
++. . |+|++...+|. ..+.. ...++++++++|+|||++++...
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 232 3 99998655443 12221 14789999999999999998765
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.8e-10 Score=100.08 Aligned_cols=98 Identities=16% Similarity=0.180 Sum_probs=77.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---C---------
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V--------- 283 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~--------- 283 (390)
..+..+|||||||+|..+..+++..| ..+++++|+ +.+++.+++. ++++++.+|+.+. +
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 44678999999999999999999987 689999998 7788777653 3599999998652 1
Q ss_pred ------C-CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 284 ------P-EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 284 ------p-~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
+ .. |+|++.... +....+|+++.+.|+|||++++.+...
T Consensus 138 ~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp GTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred cccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 1 33 999887543 334588999999999999999876543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-10 Score=99.96 Aligned_cols=107 Identities=9% Similarity=-0.019 Sum_probs=78.9
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCC-----
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV----- 283 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~----- 283 (390)
.+.+.+....+..+|||+|||+|.++..+++ .+..+++++|+ +.+++.++++ ++++++.+|+.+..
T Consensus 34 ~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (187)
T 2fhp_A 34 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE 112 (187)
T ss_dssp HHHHHHCSCCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh
Confidence 3444443234667999999999999999887 45678999998 8888887752 47999999997622
Q ss_pred -CCC-cEEEeccccccCChhHHHHHHHHH--HHhCCCCcEEEEEeccc
Q 016366 284 -PEG-DAILMKWILHCWDDDHCLRILKNC--YKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 284 -p~~-D~i~~~~vlh~~~d~~~~~~L~~~--~~~L~pgG~lli~e~~~ 327 (390)
+.. |+|++...++....+ .+++.+ .+.|+|||++++.....
T Consensus 113 ~~~~fD~i~~~~~~~~~~~~---~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 113 EKLQFDLVLLDPPYAKQEIV---SQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp TTCCEEEEEECCCGGGCCHH---HHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred cCCCCCEEEECCCCCchhHH---HHHHHHHHhcccCCCCEEEEEeCCc
Confidence 233 999998886633322 556666 88899999998876553
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.04 E-value=7.1e-11 Score=101.22 Aligned_cols=108 Identities=10% Similarity=0.013 Sum_probs=80.1
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---CCC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VPE 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~p~ 285 (390)
.+.+.+.......+|||+|||+|.++..++++ +..+++++|+ +.+++.++++ ++++++.+|+.+. .+.
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG 99 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence 33444432345679999999999999999987 6678999998 8888877652 4699999998762 223
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHH--HhCCCCcEEEEEecccC
Q 016366 286 G-DAILMKWILHCWDDDHCLRILKNCY--KAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 286 ~-D~i~~~~vlh~~~d~~~~~~L~~~~--~~L~pgG~lli~e~~~~ 328 (390)
. |+|++...++. ....++++.+. +.|+|||++++......
T Consensus 100 ~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 100 RFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp CEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 3 99999877643 23346677776 99999999998766543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.4e-10 Score=107.15 Aligned_cols=96 Identities=15% Similarity=0.234 Sum_probs=74.9
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCCC-C-cEEEecccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPE-G-DAILMKWIL 295 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p~-~-D~i~~~~vl 295 (390)
.+..+|||||||+|.++..++++ +..+++++|...+++.+++. ++|+++.+|+.+ ++|. . |+|++..+.
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 35679999999999999998886 45689999986677766642 579999999988 6763 3 999988654
Q ss_pred ccCC-hhHHHHHHHHHHHhCCCCcEEEE
Q 016366 296 HCWD-DDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 296 h~~~-d~~~~~~L~~~~~~L~pgG~lli 322 (390)
+.+. ......+|..+++.|+|||+++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 4432 23345889999999999999873
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.03 E-value=4.8e-10 Score=97.66 Aligned_cols=106 Identities=17% Similarity=0.316 Sum_probs=77.4
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCCCC----------
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV---------- 283 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~---------- 283 (390)
...++.+.+..+.+..+|||+|||+|.++..++++ ..+++++|+..+ ...++++++++|+.+..
T Consensus 12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~ 85 (191)
T 3dou_A 12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALR 85 (191)
T ss_dssp HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhh
Confidence 34566777764567789999999999999999988 678999998432 23468999999998731
Q ss_pred ----CCCcEEEeccccccC----Ch-----hHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 284 ----PEGDAILMKWILHCW----DD-----DHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 284 ----p~~D~i~~~~vlh~~----~d-----~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
...|+|++....... .+ +.+..+|+.+.+.|+|||++++..+
T Consensus 86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 223999986422111 11 2245789999999999999987554
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-10 Score=101.60 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=77.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC--CCCC-CcEEEecc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE--SVPE-GDAILMKW 293 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~--~~p~-~D~i~~~~ 293 (390)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.++++ ++++++.+|+.+ +... .|+|++..
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 3567999999999999999999987 789999998 8888877752 479999999865 2223 48888763
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
. . .....+++++++.|+|||++++.+....
T Consensus 135 ~---~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 164 (210)
T 3c3p_A 135 D---V--FNGADVLERMNRCLAKNALLIAVNALRR 164 (210)
T ss_dssp T---T--SCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred C---h--hhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence 2 2 2245899999999999999887665543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-09 Score=97.26 Aligned_cols=102 Identities=15% Similarity=0.190 Sum_probs=80.9
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCC-CC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV-PE 285 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~-p~ 285 (390)
...++..++ ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. ++++++.+|+.+.. +.
T Consensus 80 ~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 156 (248)
T 2yvl_A 80 SFYIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPE 156 (248)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCT
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCC
Confidence 345555555 667789999999999999999998 678999998 7787777652 57999999998854 43
Q ss_pred -C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 286 -G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 286 -~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
. |+|++. .++.. .+++++.+.|+|||++++..+.
T Consensus 157 ~~~D~v~~~-----~~~~~--~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 157 GIFHAAFVD-----VREPW--HYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp TCBSEEEEC-----SSCGG--GGHHHHHHHBCTTCEEEEEESS
T ss_pred CcccEEEEC-----CcCHH--HHHHHHHHHcCCCCEEEEEeCC
Confidence 3 999873 34433 7899999999999999997764
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-10 Score=97.73 Aligned_cols=96 Identities=17% Similarity=0.055 Sum_probs=73.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----C-CceEEECCCCCCCC-------CCcEEEecc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A-GVEHVGGNMFESVP-------EGDAILMKW 293 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~-rv~~~~gd~~~~~p-------~~D~i~~~~ 293 (390)
...+|||+|||+|.++..++++.++ ++++|+ +.+++.++++ . +++++++|+.+..+ ..|+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5679999999999999999998776 888888 8888887753 2 79999999876221 239999998
Q ss_pred ccccCChhHHHHHHHHHH--HhCCCCcEEEEEecccC
Q 016366 294 ILHCWDDDHCLRILKNCY--KAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~--~~L~pgG~lli~e~~~~ 328 (390)
.+| ...+ ++++.+. +.|+|||++++......
T Consensus 119 ~~~-~~~~---~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 119 PYA-MDLA---ALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp CTT-SCTT---HHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred CCc-hhHH---HHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 876 2222 4455555 99999999988766543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.7e-10 Score=105.45 Aligned_cols=112 Identities=15% Similarity=0.087 Sum_probs=85.6
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CC
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV 283 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~ 283 (390)
..+..++.... +.+..+|||+|||+|.++..++... |+.+++++|+ +.+++.|+++ ++++++++|+.+ +.
T Consensus 190 ~la~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~ 268 (354)
T 3tma_A 190 VLAQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR 268 (354)
T ss_dssp HHHHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG
T ss_pred HHHHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc
Confidence 34445555555 7778899999999999999999987 8889999998 8888887753 379999999987 44
Q ss_pred CC-C-cEEEeccccccCCh--h----HHHHHHHHHHHhCCCCcEEEEEec
Q 016366 284 PE-G-DAILMKWILHCWDD--D----HCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 284 p~-~-D~i~~~~vlh~~~d--~----~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
+. . |+|+++-.++.... . ....+++++++.|+|||++++...
T Consensus 269 ~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 269 FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 33 3 99999655543221 1 125799999999999999998643
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-10 Score=101.42 Aligned_cols=97 Identities=12% Similarity=0.045 Sum_probs=75.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCC-CC----CC-CcEEEe
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE-SV----PE-GDAILM 291 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~-~~----p~-~D~i~~ 291 (390)
+..+|||+|||+|.++..++.+.. .+++++|+ +.+++.++++ ++++++.+|+.+ .. .. .|+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 457999999999999998777653 57899998 7888887752 589999999876 21 23 599999
Q ss_pred ccccccCChhHHHHHHHHH--HHhCCCCcEEEEEeccc
Q 016366 292 KWILHCWDDDHCLRILKNC--YKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 292 ~~vlh~~~d~~~~~~L~~~--~~~L~pgG~lli~e~~~ 327 (390)
...+| ..+ ..++++.+ .+.|+|||++++.....
T Consensus 132 ~~~~~-~~~--~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-FNL--AEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCCSS-SCH--HHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCC-Ccc--HHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 88865 333 45788888 56799999998866543
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.3e-11 Score=109.74 Aligned_cols=137 Identities=15% Similarity=0.071 Sum_probs=96.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCC-cEEEecccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWIL 295 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~-D~i~~~~vl 295 (390)
.+..+|||+|||+|.++..+++.. .+++++|+ +.+++.++++ ++++++++|+.+ +.+.. |+|++...+
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPW 154 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCC
T ss_pred cCCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCc
Confidence 356899999999999999999875 78899998 8888887752 479999999987 42233 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
|+..+.. ..+.+++++|+|||.+++..... ... +.... -.+....+++.+++...|.-.+.
T Consensus 155 ~~~~~~~--~~~~~~~~~L~pgG~~i~~~~~~-~~~------------~~~~~----lp~~~~~~~~~~~l~~~g~~~i~ 215 (241)
T 3gdh_A 155 GGPDYAT--AETFDIRTMMSPDGFEIFRLSKK-ITN------------NIVYF----LPRNADIDQVASLAGPGGQVEIE 215 (241)
T ss_dssp SSGGGGG--SSSBCTTTSCSSCHHHHHHHHHH-HCS------------CEEEE----EETTBCHHHHHHTTCTTCCEEEE
T ss_pred CCcchhh--hHHHHHHhhcCCcceeHHHHHHh-hCC------------ceEEE----CCCCCCHHHHHHHhccCCCEEEE
Confidence 9877654 46888999999999855422110 000 00000 11233577788888777766555
Q ss_pred EEecCCce
Q 016366 376 FASCVCNL 383 (390)
Q Consensus 376 ~~~~~~~~ 383 (390)
.....+..
T Consensus 216 ~~~~~~~~ 223 (241)
T 3gdh_A 216 QNFLNNKL 223 (241)
T ss_dssp EEEETTEE
T ss_pred ehhhcCcc
Confidence 55554443
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.3e-10 Score=102.86 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=77.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---C------CCC
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V------PEG 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~------p~~ 286 (390)
..++.+|||||||+|..+..+++..| +.+++++|+ +.+++.++++ ++|+++.+|+.+. + +..
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 34568999999999999999999987 789999998 7888877652 4799999998652 2 233
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|+|++.... .....+++++.+.|+|||++++.+...
T Consensus 157 fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 157 YDFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp BSEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 999886432 224588999999999999988766543
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-09 Score=99.77 Aligned_cols=105 Identities=15% Similarity=0.055 Sum_probs=75.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC--C------CceEE--ECCCCC-CCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY--A------GVEHV--GGNMFE-SVP 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~--~------rv~~~--~gd~~~-~~p 284 (390)
..+.+. ..+.+..+|||||||+|.++..++++ .+++++|+..++..+++. . ++.++ ++|+.+ + +
T Consensus 64 ~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~ 138 (265)
T 2oxt_A 64 AWMEER-GYVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP-V 138 (265)
T ss_dssp HHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC-C
T ss_pred HHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC-C
Confidence 344444 22556789999999999999999887 578899984464443322 2 68999 999987 4 3
Q ss_pred C-CcEEEeccccccCChh----H-HHHHHHHHHHhCCCCc--EEEEEecc
Q 016366 285 E-GDAILMKWILHCWDDD----H-CLRILKNCYKAVPGNG--KVIVMNSI 326 (390)
Q Consensus 285 ~-~D~i~~~~vlh~~~d~----~-~~~~L~~~~~~L~pgG--~lli~e~~ 326 (390)
. .|+|++... +..+.. . ...+|+.++++|+||| .+++..+.
T Consensus 139 ~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 139 ERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 3 399999876 443322 1 1248999999999999 98885554
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.5e-10 Score=100.94 Aligned_cols=95 Identities=6% Similarity=0.119 Sum_probs=74.8
Q ss_pred cceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC--------CCceEEECCCCCC---CC-CC-cEEEec
Q 016366 228 VERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFES---VP-EG-DAILMK 292 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~~---~p-~~-D~i~~~ 292 (390)
..+|||||||+|..+..+++..| +.+++++|+ +.+++.++++ ++|+++.+|+.+. ++ .. |+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34999999999999999999875 789999998 7788877652 4799999998762 32 33 999886
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
...+ ....+++++.+.|+|||++++.+...
T Consensus 137 ~~~~-----~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSPM-----DLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp CCTT-----THHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred CcHH-----HHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 5332 23478999999999999988755543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.98 E-value=5.9e-10 Score=99.64 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=78.8
Q ss_pred HHHHHhh-ccCCcceEEEEcCCccHHHHHHHhhCC------CCeEEEecc-hHHHhhCCC-----------CCCceEEEC
Q 016366 217 RILEHYE-GFQNVERLVDVGGGFGVTLSMITSKYP------QIKAVNFDL-PHVVQDAPS-----------YAGVEHVGG 277 (390)
Q Consensus 217 ~l~~~~~-~~~~~~~iLDiG~G~G~~~~~l~~~~p------~~~~~~~Dl-~~~~~~a~~-----------~~rv~~~~g 277 (390)
.+++.+. ...+..+|||||||+|.++..+++..+ ..+++++|+ +.+++.+++ .++++++.+
T Consensus 73 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 152 (227)
T 1r18_A 73 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG 152 (227)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC
Confidence 3444442 145668999999999999999998765 368899997 778877764 257999999
Q ss_pred CCCCCCCC-C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 278 NMFESVPE-G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 278 d~~~~~p~-~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|..++++. + |+|++...+++++ +++.+.|+|||++++.-.
T Consensus 153 d~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 153 DGRKGYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp CGGGCCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CcccCCCcCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 99876553 3 9999999998765 567889999999988654
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.98 E-value=9.4e-10 Score=103.49 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=77.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CC-CCC-cEEEec-
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV-PEG-DAILMK- 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~-p~~-D~i~~~- 292 (390)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ ++++++++|+.+ +. +.. |+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 56778999999999999999999875 478999998 7777777652 479999999987 32 333 999873
Q ss_pred -----cccccCCh-------hH-------HHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 293 -----WILHCWDD-------DH-------CLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 293 -----~vlh~~~d-------~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
.+++..++ .+ ..++|+++.+.|||||++++++-..
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 33443232 11 1489999999999999999876543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.96 E-value=7.2e-10 Score=97.37 Aligned_cols=96 Identities=11% Similarity=0.048 Sum_probs=74.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC--CCCC-C-cEEEecccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE--SVPE-G-DAILMKWIL 295 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~--~~p~-~-D~i~~~~vl 295 (390)
+..+|||+|||+|.++..++++.. .+++++|+ +.+++.++++ ++++++++|+.+ +.+. . |+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 457999999999999998887753 37899998 8888887752 489999999876 3333 3 999998776
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCcEEEEEecc
Q 016366 296 HCWDDDHCLRILKNCYK--AVPGNGKVIVMNSI 326 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~--~L~pgG~lli~e~~ 326 (390)
| ..+ ...+++.+.+ .|+|||++++....
T Consensus 133 ~-~~~--~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-RGL--LEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp S-TTT--HHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred C-CCc--HHHHHHHHHhcCccCCCcEEEEEECC
Confidence 5 333 3467888876 49999999886654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-09 Score=101.15 Aligned_cols=96 Identities=19% Similarity=0.139 Sum_probs=68.9
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-----hHHHhhCC--CC--CCceEEEC-CCCC-CCCCCcEEEecc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PHVVQDAP--SY--AGVEHVGG-NMFE-SVPEGDAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-----~~~~~~a~--~~--~rv~~~~g-d~~~-~~p~~D~i~~~~ 293 (390)
+.+..+|||||||+|.++..++++ .+++++|+ +.+++... .. ++|+++++ |+.+ +....|+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 456789999999999999999987 36778886 44443322 12 57999999 9886 332349999976
Q ss_pred ccc---cCChhH-HHHHHHHHHHhCCCCcEEEEE
Q 016366 294 ILH---CWDDDH-CLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 294 vlh---~~~d~~-~~~~L~~~~~~L~pgG~lli~ 323 (390)
.++ +..+.. ...+|+.++++|+|||.+++.
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 653 222222 225899999999999988874
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=99.91 Aligned_cols=105 Identities=14% Similarity=0.018 Sum_probs=74.5
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC--C------CceEE--ECCCCC-CCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY--A------GVEHV--GGNMFE-SVP 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~--~------rv~~~--~gd~~~-~~p 284 (390)
..+.+... +.+..+|||||||+|.++..++++ .+++++|+..++..+++. . +++++ ++|+.+ + +
T Consensus 72 ~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~ 146 (276)
T 2wa2_A 72 AWIDERGG-VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME-P 146 (276)
T ss_dssp HHHHHTTS-CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-C
T ss_pred HHHHHcCC-CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-C
Confidence 34444422 456789999999999999999987 478889984464444322 2 68999 999886 4 3
Q ss_pred C-CcEEEeccccccCChh----H-HHHHHHHHHHhCCCCc--EEEEEecc
Q 016366 285 E-GDAILMKWILHCWDDD----H-CLRILKNCYKAVPGNG--KVIVMNSI 326 (390)
Q Consensus 285 ~-~D~i~~~~vlh~~~d~----~-~~~~L~~~~~~L~pgG--~lli~e~~ 326 (390)
. .|+|++... +..+.. . ...+|+.++++|+||| .+++..+.
T Consensus 147 ~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 147 FQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 3 399999877 443321 1 1247999999999999 98885544
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-09 Score=97.38 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=76.1
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-----CCCeEEEecc-hHHHhhCCC-----------CCCceEEECCCCCCC----
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESV---- 283 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-----p~~~~~~~Dl-~~~~~~a~~-----------~~rv~~~~gd~~~~~---- 283 (390)
..+..+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++ .++++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999986 5678999998 778777764 247999999998743
Q ss_pred C--CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 284 P--EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 284 p--~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+ .. |+|++...+|++ ++++.+.|+|||++++.-..
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEcc
Confidence 2 23 999999999865 46778899999999987543
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=5.1e-10 Score=99.96 Aligned_cols=98 Identities=11% Similarity=0.202 Sum_probs=77.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---CC-----CC-
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP-----EG- 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~p-----~~- 286 (390)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++. ++++++.+|+.+. ++ ..
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 44678999999999999999999887 789999998 7787777642 5899999998652 21 33
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|+|++... ......+++++.+.|+|||.+++.+...
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 99988643 2334588999999999999998876553
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.8e-10 Score=104.57 Aligned_cols=99 Identities=14% Similarity=0.113 Sum_probs=77.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCC---CCCC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~---~p~~-D~i~ 290 (390)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|+.+. .+.. |+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999998878889999998 888887654 25899999998762 2333 9999
Q ss_pred eccccccCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 016366 291 MKWILHCWDDDHC--LRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 291 ~~~vlh~~~d~~~--~~~L~~~~~~L~pgG~lli~e 324 (390)
+....+..+.... ..++++++++|+|||++++..
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 8655443333222 589999999999999998753
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.94 E-value=5.2e-10 Score=103.20 Aligned_cols=97 Identities=20% Similarity=0.167 Sum_probs=75.7
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCC---CCCC-cEEEe
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAILM 291 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~---~p~~-D~i~~ 291 (390)
++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .+|++++.+|+.+. .+.. |+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 568999999999999999998877788999998 888887664 26899999998762 2233 99998
Q ss_pred ccccccCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 016366 292 KWILHCWDDDH--CLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 292 ~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~ 323 (390)
....+..+... ..+++++++++|+|||++++.
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~ 188 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 65544332110 147899999999999998875
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5.5e-10 Score=104.50 Aligned_cols=99 Identities=16% Similarity=0.154 Sum_probs=74.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCC--C-CCC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES--V-PEG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~--~-p~~-D~i~ 290 (390)
.++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. . +.. |+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888889999998 888877664 36899999998652 2 233 9999
Q ss_pred eccccccCChh--HHHHHHHHHHHhCCCCcEEEEEe
Q 016366 291 MKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 291 ~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+....+..+.. ...+++++++++|+|||++++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 86554432221 12478999999999999988755
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.93 E-value=6e-10 Score=105.46 Aligned_cols=98 Identities=17% Similarity=0.165 Sum_probs=76.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCC---CCCC-C-cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPE-G-DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~---~~p~-~-D~i 289 (390)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+ ..+. . |+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888889999998 888887764 2589999999865 2333 3 999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 016366 290 LMKWILHCWDDDH--CLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 290 ~~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~ 323 (390)
++...-+..+.+. ...++++++++|+|||++++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9865422211111 358999999999999999875
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.5e-09 Score=95.27 Aligned_cols=94 Identities=19% Similarity=0.193 Sum_probs=75.1
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCC-----------CCCceEEECCCCCCC-CC-C-cE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESV-PE-G-DA 288 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----------~~rv~~~~gd~~~~~-p~-~-D~ 288 (390)
..+..+|||||||+|..+..+++.. +..+++++|+ +.+++.+++ .++++++.+|+.... +. . |+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3567899999999999999999885 6678999998 778777664 247999999987632 22 3 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|++...++++. +++++.|+|||++++....
T Consensus 155 i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 99999887654 5678999999999987543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.8e-10 Score=104.86 Aligned_cols=99 Identities=18% Similarity=0.143 Sum_probs=77.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-----------CCCceEEECCCCCC---CCCC-cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFES---VPEG-DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------~~rv~~~~gd~~~~---~p~~-D~i 289 (390)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. .+.. |+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 3568999999999999999999878889999998 778776653 35899999998762 2233 999
Q ss_pred Eecccccc---CChhH--HHHHHHHHHHhCCCCcEEEEEe
Q 016366 290 LMKWILHC---WDDDH--CLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 290 ~~~~vlh~---~~d~~--~~~~L~~~~~~L~pgG~lli~e 324 (390)
++....|. -+... ..+++++++++|+|||++++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 99876654 21111 2588999999999999999864
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=7.1e-10 Score=102.62 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=74.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------------CCCceEEECCCCCCC--CCC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------------YAGVEHVGGNMFESV--PEG 286 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------------~~rv~~~~gd~~~~~--p~~ 286 (390)
.++.+|||||||+|.++..+++. |..+++++|+ +.+++.+++ .++++++.+|+.+.+ +..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 35689999999999999999998 8889999998 778776552 357999999986521 333
Q ss_pred -cEEEeccccccCChhH--HHHHHHHHHHhCCCCcEEEEEe
Q 016366 287 -DAILMKWILHCWDDDH--CLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~e 324 (390)
|+|++....+..+... ..++++++++.|+|||++++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999876544322222 2578999999999999988763
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.92 E-value=7.6e-10 Score=99.78 Aligned_cols=97 Identities=14% Similarity=0.183 Sum_probs=76.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---C------CCC
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V------PEG 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~------p~~ 286 (390)
..++.+|||||||+|..+..+++..| +.+++++|+ +.+++.++++ ++|+++.+|+.+. + +..
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 34568999999999999999999987 789999998 7788777642 4799999998752 2 233
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|+|++... ......+++++.+.|+|||.+++.+..
T Consensus 148 fD~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~ 183 (237)
T 3c3y_A 148 YDFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTL 183 (237)
T ss_dssp EEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred cCEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 99987632 233568999999999999998875544
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.92 E-value=9.3e-10 Score=102.03 Aligned_cols=104 Identities=15% Similarity=0.261 Sum_probs=76.6
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCC
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP 284 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p 284 (390)
....+++.++ ..+..+|||||||+|.++..++++.. +++++|+ +.+++.+++. ++++++.+|+.+ +++
T Consensus 16 i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~ 92 (285)
T 1zq9_A 16 IINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 92 (285)
T ss_dssp HHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence 3456666666 66778999999999999999999864 6777777 7787776642 479999999988 677
Q ss_pred CCcEEEeccccccCChhHHHHHHHH--------------H--HHhCCCCcEEE
Q 016366 285 EGDAILMKWILHCWDDDHCLRILKN--------------C--YKAVPGNGKVI 321 (390)
Q Consensus 285 ~~D~i~~~~vlh~~~d~~~~~~L~~--------------~--~~~L~pgG~ll 321 (390)
..|+|+++-.+ ++..+....+|.. + +++++|||+++
T Consensus 93 ~fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 93 FFDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred hhcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 56999885544 4555555555532 2 46999999653
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.9e-09 Score=93.01 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=67.7
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCceEEECCCCCCCCCC-cEEEeccccccCChh
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVPEG-DAILMKWILHCWDDD 301 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~ 301 (390)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ .+++++++|+.+ ++.. |+|+++..+|++++.
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCc
Confidence 345679999999999999999987 5557899998 8888888764 389999999986 3444 999999999998765
Q ss_pred HHHHHHHHHHHhC
Q 016366 302 HCLRILKNCYKAV 314 (390)
Q Consensus 302 ~~~~~L~~~~~~L 314 (390)
...++++++.+.+
T Consensus 127 ~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 127 SDRAFIDKAFETS 139 (200)
T ss_dssp -CHHHHHHHHHHE
T ss_pred hhHHHHHHHHHhc
Confidence 5568899999998
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.2e-10 Score=99.99 Aligned_cols=98 Identities=13% Similarity=0.191 Sum_probs=77.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---CC-----CC-c
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP-----EG-D 287 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~p-----~~-D 287 (390)
.++.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++. ++|+++.+|+.+. ++ .. |
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 3567999999999999999999987 689999998 7788877652 4799999997541 21 33 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
+|++... ......+++++.+.|+|||++++.+...+
T Consensus 151 ~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 151 LIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 9987654 23345899999999999999988766543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.90 E-value=6.3e-10 Score=104.48 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=73.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCCC---CCC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFESV---PEG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~~---p~~-D~i~ 290 (390)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|+.+.+ +.. |+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 3568999999999999999999888889999998 888877653 257999999987622 233 9999
Q ss_pred eccccccCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 016366 291 MKWILHCWDDDHC--LRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 291 ~~~vlh~~~d~~~--~~~L~~~~~~L~pgG~lli~e 324 (390)
+...-+..++... ..++++++++|+|||++++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8654332222211 589999999999999988754
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=7.4e-10 Score=104.42 Aligned_cols=99 Identities=14% Similarity=0.113 Sum_probs=75.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCC---CCCC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~---~p~~-D~i~ 290 (390)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. .+.. |+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3568999999999999999998878889999998 888877653 25799999998762 2333 9999
Q ss_pred eccccccCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 016366 291 MKWILHCWDDDHC--LRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 291 ~~~vlh~~~d~~~--~~~L~~~~~~L~pgG~lli~e 324 (390)
+...-+..+.... .++++++++.|+|||++++..
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8653222122211 589999999999999988753
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-09 Score=94.90 Aligned_cols=95 Identities=8% Similarity=0.080 Sum_probs=78.8
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC-cEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~ 297 (390)
..+.+|||||||+|-++..+. |..+++++|+ +.+++.+++. .+.++...|... +.|.. |++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 467899999999999999888 8899999998 8888887763 567889999988 55554 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+.+++....+ ++.+.|++++.++-..
T Consensus 181 LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 9877665555 8999999988766544
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-09 Score=100.76 Aligned_cols=97 Identities=11% Similarity=0.147 Sum_probs=79.7
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCC-CCCC-cEEEecccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES-VPEG-DAILMKWIL 295 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~-~p~~-D~i~~~~vl 295 (390)
+.+..+|||+|||+|.++..+++..+..+++++|+ +.+++.++++ ++++++.+|+.+. .+.. |+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999988889999998 8888887752 5789999999874 3223 999887654
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
...+++.++.+.|+|||++++.+...
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 23478999999999999999888764
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.87 E-value=3.3e-09 Score=97.02 Aligned_cols=89 Identities=10% Similarity=0.052 Sum_probs=73.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----------CCceEEECCCCCCCCCCcEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFESVPEGDAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----------~rv~~~~gd~~~~~p~~D~i~~~~v 294 (390)
.++.+|||||||+|..+..+++. + .+++.+|+ +.+++.++++ +|++++.+|..+.....|+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 35689999999999999999988 7 89999998 8899988763 47999999998733223999986
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.+++. .+++.+++.|+|||.+++.
T Consensus 147 ---~~dp~--~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 147 ---QEPDI--HRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp ---SCCCH--HHHHHHHTTEEEEEEEEEE
T ss_pred ---CCChH--HHHHHHHHhcCCCcEEEEE
Confidence 24444 4899999999999999885
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-09 Score=101.20 Aligned_cols=97 Identities=23% Similarity=0.245 Sum_probs=72.4
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCCC---CCC-cEEEe
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFESV---PEG-DAILM 291 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~~---p~~-D~i~~ 291 (390)
++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+.+ +.. |+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 458999999999999999999878889999998 778776654 268999999986522 233 99997
Q ss_pred ccccccCChh---HHHHHHHHHHHhCCCCcEEEEE
Q 016366 292 KWILHCWDDD---HCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 292 ~~vlh~~~d~---~~~~~L~~~~~~L~pgG~lli~ 323 (390)
...-+..... ...++++++++.|+|||++++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 5332211110 1258899999999999998875
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-08 Score=98.64 Aligned_cols=122 Identities=13% Similarity=0.098 Sum_probs=90.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCC-C-cEEEecc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE-G-DAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~-~-D~i~~~~ 293 (390)
+.+..+|||+|||+|.++..++...+..+++++|+ +.+++.|+++ ++++++++|+.+ +.+. . |+|+++-
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 46778999999999999999999988667888888 8888888753 479999999988 6553 3 9999975
Q ss_pred ccccCC------hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHH
Q 016366 294 ILHCWD------DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 367 (390)
Q Consensus 294 vlh~~~------d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~ 367 (390)
.++... ..-..++++.+++.| ||.++++.. +.+.+.+.++
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--------------------------------~~~~~~~~~~ 340 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT--------------------------------EKKAIEEAIA 340 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES--------------------------------CHHHHHHHHH
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC--------------------------------CHHHHHHHHH
Confidence 544321 111257889999988 555554322 2445567888
Q ss_pred HCCCCeeEEEecC
Q 016366 368 AAGFKGINFASCV 380 (390)
Q Consensus 368 ~aGf~~~~~~~~~ 380 (390)
+.||+..+...+.
T Consensus 341 ~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 341 ENGFEIIHHRVIG 353 (373)
T ss_dssp HTTEEEEEEEEEE
T ss_pred HcCCEEEEEEEEE
Confidence 9999998877765
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.2e-09 Score=100.92 Aligned_cols=95 Identities=19% Similarity=0.237 Sum_probs=71.4
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC-------CCCceEEECCCCC-CCCCC-cEEEecccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFE-SVPEG-DAILMKWILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-------~~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~ 297 (390)
++.+|||||||+|.++...+++. ..+++++|...+++.|++ .++|+++.+|+++ ++|+. |+|++...-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 45789999999999988777654 357889997556666654 2679999999998 78865 99987443333
Q ss_pred CC-hhHHHHHHHHHHHhCCCCcEEEE
Q 016366 298 WD-DDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 298 ~~-d~~~~~~L~~~~~~L~pgG~lli 322 (390)
+. +.....++....+.|+|||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 22 22355788888999999998763
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.9e-08 Score=87.04 Aligned_cols=87 Identities=13% Similarity=0.062 Sum_probs=70.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----C-CceEEECCCCCCCCC-CcEEEeccccccC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A-GVEHVGGNMFESVPE-GDAILMKWILHCW 298 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~-rv~~~~gd~~~~~p~-~D~i~~~~vlh~~ 298 (390)
....+|||+|||+|.++..+++..+ .+++++|+ +.+++.++++ . +++++++|+.+ ++. .|+|+++-.+|..
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGSQ 125 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCccc
Confidence 4567999999999999999998743 37888998 7888877653 2 79999999986 333 4999999999887
Q ss_pred ChhHHHHHHHHHHHhC
Q 016366 299 DDDHCLRILKNCYKAV 314 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L 314 (390)
......++|+++.+.+
T Consensus 126 ~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 126 RKHADRPFLLKAFEIS 141 (207)
T ss_dssp STTTTHHHHHHHHHHC
T ss_pred cCCchHHHHHHHHHhc
Confidence 6555568899999998
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.79 E-value=4.9e-09 Score=96.59 Aligned_cols=104 Identities=10% Similarity=0.054 Sum_probs=76.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CC-----CCC-cEE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV-----PEG-DAI 289 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~-----p~~-D~i 289 (390)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ ++++++.+|+.+ +. +.. |+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 456789999999999999999998876 78999998 7777766542 479999999876 32 333 999
Q ss_pred Eec------ccccc---CCh-------hHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 290 LMK------WILHC---WDD-------DHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 290 ~~~------~vlh~---~~d-------~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
++. .+++. |.. ....++|+++.+.|+|||++++.+-...
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~ 215 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME 215 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 886 22221 111 1125899999999999999998775543
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-09 Score=110.76 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=81.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----C--CCceEEECCCCC---CCCC-C-cEEEecc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----Y--AGVEHVGGNMFE---SVPE-G-DAILMKW 293 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~--~rv~~~~gd~~~---~~p~-~-D~i~~~~ 293 (390)
.++.+|||||||.|.++..+++. +.+++++|+ +.+++.|+. . .+|++.++++++ ..+. . |+|+|..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 46789999999999999999997 468999998 778887764 2 358999999876 2333 3 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
+|||.+++....-+.++.+.|+++|+.++...+..+
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e 178 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKE 178 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTT
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEecccc
Confidence 999999887555666778888888877777665544
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-08 Score=100.19 Aligned_cols=108 Identities=13% Similarity=0.124 Sum_probs=82.5
Q ss_pred HHhhccCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCC------CCceEEECCCCC-C--CC-CC-
Q 016366 220 EHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VP-EG- 286 (390)
Q Consensus 220 ~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~--~p-~~- 286 (390)
..++ ..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ ++++++++|+.+ + ++ ..
T Consensus 253 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~f 331 (450)
T 2yxl_A 253 IVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVA 331 (450)
T ss_dssp HHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCE
T ss_pred HhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCC
Confidence 3344 566789999999999999999999877 78999998 6677666542 579999999987 3 44 33
Q ss_pred cEEEe------ccccccCChhH-------H-------HHHHHHHHHhCCCCcEEEEEecccC
Q 016366 287 DAILM------KWILHCWDDDH-------C-------LRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 287 D~i~~------~~vlh~~~d~~-------~-------~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
|+|++ ..+++..++.. . .++|+++.+.|+|||++++++....
T Consensus 332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 99986 34555544421 1 5789999999999999998876543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-08 Score=93.88 Aligned_cols=116 Identities=11% Similarity=0.059 Sum_probs=80.7
Q ss_pred cCCcceEEEEcC------CccHHHHHHHhhCC-CCeEEEecchHHHhhCCCCCCceE-EECCCCC-CCCCC-cEEEeccc
Q 016366 225 FQNVERLVDVGG------GFGVTLSMITSKYP-QIKAVNFDLPHVVQDAPSYAGVEH-VGGNMFE-SVPEG-DAILMKWI 294 (390)
Q Consensus 225 ~~~~~~iLDiG~------G~G~~~~~l~~~~p-~~~~~~~Dl~~~~~~a~~~~rv~~-~~gd~~~-~~p~~-D~i~~~~v 294 (390)
+.+..+|||+|| |+|. ..+++..| +.+++++|+.+. .+++++ +++|+.+ +++.. |+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------v~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------VSDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------BCSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------CCCCEEEEECccccCCccCcccEEEEcCC
Confidence 566789999999 4477 44566666 689999998433 247999 9999987 55444 99998633
Q ss_pred ccc--------C-ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 295 LHC--------W-DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 295 lh~--------~-~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
.+. . .......+|+.+++.|+|||++++...... ...++.++
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-----------------------------~~~~l~~~ 183 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-----------------------------WNADLYKL 183 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------------------------CCHHHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-----------------------------CHHHHHHH
Confidence 211 0 022345899999999999999998543211 12356677
Q ss_pred HHHCCCCeeEEE
Q 016366 366 AIAAGFKGINFA 377 (390)
Q Consensus 366 l~~aGf~~~~~~ 377 (390)
+++.||..+++.
T Consensus 184 l~~~GF~~v~~~ 195 (290)
T 2xyq_A 184 MGHFSWWTAFVT 195 (290)
T ss_dssp HTTEEEEEEEEE
T ss_pred HHHcCCcEEEEE
Confidence 778888776665
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=97.39 Aligned_cols=100 Identities=10% Similarity=0.158 Sum_probs=79.9
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCC-----CeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCC-CC-cEEEec
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQ-----IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVP-EG-DAILMK 292 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~-----~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p-~~-D~i~~~ 292 (390)
....+|||+|||+|.++..+++..+. .+++++|+ +.+++.|+.. .+++++++|.+++.+ .. |+|+++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 45679999999999999999988764 67899998 7787777642 368999999988544 33 999999
Q ss_pred cccccCChhHH----------------HHHHHHHHHhCCCCcEEEEEec
Q 016366 293 WILHCWDDDHC----------------LRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 293 ~vlh~~~d~~~----------------~~~L~~~~~~L~pgG~lli~e~ 325 (390)
-.+++++.++. ..+++++.+.|+|||+++++.+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 88777654432 2589999999999999888664
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.2e-08 Score=97.82 Aligned_cols=106 Identities=13% Similarity=0.105 Sum_probs=78.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCC-CC-cEEEe
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP-EG-DAILM 291 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p-~~-D~i~~ 291 (390)
..+++.+. .....+|||+|||+|.++..+++++ +..+++++|+ +.+++.| .+++++++|+++..+ .. |+|++
T Consensus 29 ~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 29 DFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 104 (421)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence 34444444 3345699999999999999999987 6788999998 7777776 679999999987433 33 99999
Q ss_pred cccccc----------CChhHH-----------------HHHHHHHHHhCCCCcEEEEEec
Q 016366 292 KWILHC----------WDDDHC-----------------LRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 292 ~~vlh~----------~~d~~~-----------------~~~L~~~~~~L~pgG~lli~e~ 325 (390)
+=.+.. ++++.. ..+++++.+.|+|||+++++.+
T Consensus 105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 522211 222221 2679999999999999988665
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-08 Score=92.28 Aligned_cols=104 Identities=8% Similarity=0.186 Sum_probs=72.4
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCC-CCCC-C
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPE-G 286 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~-~~p~-~ 286 (390)
....+++.++ ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .
T Consensus 18 ~~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~ 94 (244)
T 1qam_A 18 NIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 94 (244)
T ss_dssp HHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCC
Confidence 3455666655 5677899999999999999999986 57888887 778777664 3689999999988 6764 3
Q ss_pred cEEEeccccccCChhHHHHHH--------------HHHHHhCCCCcEE
Q 016366 287 DAILMKWILHCWDDDHCLRIL--------------KNCYKAVPGNGKV 320 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L--------------~~~~~~L~pgG~l 320 (390)
+.++.++.-++++.+....++ ..+.+.++|+|++
T Consensus 95 ~~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l 142 (244)
T 1qam_A 95 SYKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSL 142 (244)
T ss_dssp CCEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHH
T ss_pred CeEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcch
Confidence 444445544444444333443 3366677776644
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-07 Score=89.20 Aligned_cols=152 Identities=16% Similarity=0.177 Sum_probs=96.7
Q ss_pred cceEEEEcCCccHHHHHH--------HhhC-------CCCeEEEecchHH--------HhhCCCC-----------CC--
Q 016366 228 VERLVDVGGGFGVTLSMI--------TSKY-------PQIKAVNFDLPHV--------VQDAPSY-----------AG-- 271 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l--------~~~~-------p~~~~~~~Dl~~~--------~~~a~~~-----------~r-- 271 (390)
..+|+|+|||+|..+..+ .+++ |.+++...|+|.- ++..++. .+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 578999999999888776 3333 7888999898531 2222110 01
Q ss_pred -ceEEECCCCC-CCCCC--cEEEeccccccCChh------------------------------------HHHHHHHHHH
Q 016366 272 -VEHVGGNMFE-SVPEG--DAILMKWILHCWDDD------------------------------------HCLRILKNCY 311 (390)
Q Consensus 272 -v~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~------------------------------------~~~~~L~~~~ 311 (390)
+.-+.+.|.. .+|.. |+|+++.+||++++. +-..+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788887 77875 999999999998721 3345799999
Q ss_pred HhCCCCcEEEEEecccCCCC-CcchH-Hh-----h-hhhhhhhhh-----hhcC--C--CcccCHHHHHHHHH-HCCCCe
Q 016366 312 KAVPGNGKVIVMNSIVPEIP-EVSSA-AR-----E-TSLLDVLLM-----TRDG--G--GRERTKKEYTELAI-AAGFKG 373 (390)
Q Consensus 312 ~~L~pgG~lli~e~~~~~~~-~~~~~-~~-----~-~~~~d~~~~-----~~~~--~--g~~~t~~e~~~ll~-~aGf~~ 373 (390)
+.|+|||++++.-...++.. ..... .. . ..+.++..- .... + -..++.+|++++++ +.||++
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I 292 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI 292 (374)
T ss_dssp HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence 99999999998777654421 11000 00 0 001111000 0000 1 12479999999998 589999
Q ss_pred eEEEec
Q 016366 374 INFASC 379 (390)
Q Consensus 374 ~~~~~~ 379 (390)
.++...
T Consensus 293 ~~le~~ 298 (374)
T 3b5i_A 293 DKLVVY 298 (374)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 876543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-08 Score=93.80 Aligned_cols=101 Identities=12% Similarity=0.258 Sum_probs=72.5
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCC-CCCC
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-SVPE 285 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~~p~ 285 (390)
....+++.++ ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 30 i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~~--~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~ 106 (299)
T 2h1r_A 30 ILDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPLA--KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPK 106 (299)
T ss_dssp HHHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTTS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCC
T ss_pred HHHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCccc
Confidence 3455666665 5677899999999999999999873 57888888 778877664 2689999999987 6655
Q ss_pred CcEEEeccccccCChhHHHHHH---------------HHHHHhCCCCc
Q 016366 286 GDAILMKWILHCWDDDHCLRIL---------------KNCYKAVPGNG 318 (390)
Q Consensus 286 ~D~i~~~~vlh~~~d~~~~~~L---------------~~~~~~L~pgG 318 (390)
.|+|+++-.. +++.+...++| ..+.+.++|+|
T Consensus 107 ~D~Vv~n~py-~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 107 FDVCTANIPY-KISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp CSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred CCEEEEcCCc-ccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 5999986554 46666666666 34678888876
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.8e-08 Score=92.55 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=88.9
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCC--cEEEeccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG--DAILMKWI 294 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~--D~i~~~~v 294 (390)
..++.+|||+|||+|.++..++++. ..+++++|+ |.+++.++++ ++|+++.+|..+-.+.. |.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 3567899999999999999999874 568999998 8887777652 67999999998743333 98887643
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCee
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 374 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 374 (390)
. . ...+|..+.+.|+|||+|.+.+....+.. .....+.++++.++.|+++.
T Consensus 202 ~----~--~~~~l~~a~~~lk~gG~ih~~~~~~e~~~-----------------------~~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 202 V----R--THEFIPKALSIAKDGAIIHYHNTVPEKLM-----------------------PREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp S----S--GGGGHHHHHHHEEEEEEEEEEEEEEGGGT-----------------------TTTTHHHHHHHHHHTTCEEE
T ss_pred C----c--HHHHHHHHHHHcCCCCEEEEEeeeccccc-----------------------chhHHHHHHHHHHHcCCcEE
Confidence 1 1 23678889999999999988777643210 01235667888889998764
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.72 E-value=3.5e-09 Score=95.85 Aligned_cols=106 Identities=8% Similarity=0.176 Sum_probs=77.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----CCceEEECCCCC-CCCC-CcE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPE-GDA 288 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~-~~p~-~D~ 288 (390)
..+++.++ ..+..+|||||||+|.++..++++. .+++++|+ +.+++.++++ ++++++.+|+.+ +++. ...
T Consensus 19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f 95 (245)
T 1yub_A 19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence 45566665 5677899999999999999999986 68899998 7888888764 579999999988 6664 333
Q ss_pred EEeccccccCChhHHHHHH--------------HHHHHhCCCCcEEEEEe
Q 016366 289 ILMKWILHCWDDDHCLRIL--------------KNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L--------------~~~~~~L~pgG~lli~e 324 (390)
++.++.-++.+++....++ +.+.+.|+|||++.+..
T Consensus 96 ~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 96 KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 4444433333333333333 66899999999877643
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.5e-07 Score=88.50 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=94.6
Q ss_pred cceEEEEcCCccHHHHHHHhh-----------------CCCCeEEEecch-----------H-HHhhCCC----CCC---
Q 016366 228 VERLVDVGGGFGVTLSMITSK-----------------YPQIKAVNFDLP-----------H-VVQDAPS----YAG--- 271 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~-----------------~p~~~~~~~Dl~-----------~-~~~~a~~----~~r--- 271 (390)
..+|+|+||++|..+..+... .|.+.++..|+| . ..+..++ ..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 679999999999988877765 477888888987 1 1111111 112
Q ss_pred ceEEECCCCC-CCCCC--cEEEeccccccCChhH-------------------------H------------HHHHHHHH
Q 016366 272 VEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH-------------------------C------------LRILKNCY 311 (390)
Q Consensus 272 v~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~-------------------------~------------~~~L~~~~ 311 (390)
+.-+.|.|.. .+|.. |+|+++.+||++++.. + ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677877 68876 9999999999976321 1 12388889
Q ss_pred HhCCCCcEEEEEecccCCCC-CcchH-Hhhhhhhhhhhhhh--------c-CCCcccCHHHHHHHHHHCC-CCeeEEEe
Q 016366 312 KAVPGNGKVIVMNSIVPEIP-EVSSA-ARETSLLDVLLMTR--------D-GGGRERTKKEYTELAIAAG-FKGINFAS 378 (390)
Q Consensus 312 ~~L~pgG~lli~e~~~~~~~-~~~~~-~~~~~~~d~~~~~~--------~-~~g~~~t~~e~~~ll~~aG-f~~~~~~~ 378 (390)
+.|+|||++++.-...++.. .+... .-...+.++..... + .--..++.+|++++++++| |++.++..
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~ 291 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLET 291 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEE
Confidence 99999999998777654420 11100 11112222111100 1 0123478999999999985 88877643
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.65 E-value=5.1e-08 Score=92.20 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=73.4
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------C--CceEEECCCCCCC------CC-CcEEE
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A--GVEHVGGNMFESV------PE-GDAIL 290 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~--rv~~~~gd~~~~~------p~-~D~i~ 290 (390)
+..+|||+|||+|.++..+++... +++++|+ +.+++.++++ + +++++++|+++.. .. .|+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 457999999999999999998654 8999998 8888887752 2 4999999997722 22 39999
Q ss_pred eccc----------cccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 291 MKWI----------LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 291 ~~~v----------lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+.-. ++. .....++++++.+.|+|||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~--~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQL--FDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEH--HHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ECCccccCCchHHHHHH--HHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 8432 122 233568999999999999997776554
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.63 E-value=5e-08 Score=95.67 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=81.0
Q ss_pred HHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-C--CCC-C-c
Q 016366 219 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-S--VPE-G-D 287 (390)
Q Consensus 219 ~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~--~p~-~-D 287 (390)
...++ ..++.+|||+|||+|..+..+++..++.+++++|+ +.+++.++++ -+++++++|+.+ + ++. . |
T Consensus 239 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD 317 (429)
T 1sqg_A 239 MTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFD 317 (429)
T ss_dssp HHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEE
T ss_pred HHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCC
Confidence 33344 56678999999999999999999998889999998 6666665542 258999999987 3 343 3 9
Q ss_pred EEEe------ccccccCChh-------HH-------HHHHHHHHHhCCCCcEEEEEeccc
Q 016366 288 AILM------KWILHCWDDD-------HC-------LRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 288 ~i~~------~~vlh~~~d~-------~~-------~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
+|++ ..+++..++. +. .++|+++.+.|+|||++++++-..
T Consensus 318 ~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred EEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9986 2445544442 11 488999999999999999877544
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.63 E-value=5.8e-07 Score=85.27 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=95.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhh----------------CCCCeEEEecchH-----HHhhCCC---CCC---ceEEECC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSK----------------YPQIKAVNFDLPH-----VVQDAPS---YAG---VEHVGGN 278 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~----------------~p~~~~~~~Dl~~-----~~~~a~~---~~r---v~~~~gd 278 (390)
+...+|+|+||++|..+..+... .|.+.++..|+|. ....... ..+ +.-+.|.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34578999999999776654443 5678888899853 1111111 012 3446788
Q ss_pred CCC-CCCCC--cEEEeccccccCChh-------------------------------HHHHHHHHHHHhCCCCcEEEEEe
Q 016366 279 MFE-SVPEG--DAILMKWILHCWDDD-------------------------------HCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 279 ~~~-~~p~~--D~i~~~~vlh~~~d~-------------------------------~~~~~L~~~~~~L~pgG~lli~e 324 (390)
|.. .+|.. |+|+++..||++++. +-..+|+..++.|+|||++++.-
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 888 78876 999999999997641 22346999999999999999877
Q ss_pred cccCCCCC-cc-----hHHhhhhhhhhhhhhhc---------CCCcccCHHHHHHHHHHCC-CCeeEEE
Q 016366 325 SIVPEIPE-VS-----SAARETSLLDVLLMTRD---------GGGRERTKKEYTELAIAAG-FKGINFA 377 (390)
Q Consensus 325 ~~~~~~~~-~~-----~~~~~~~~~d~~~~~~~---------~~g~~~t~~e~~~ll~~aG-f~~~~~~ 377 (390)
...++... .. +..-...+.++...... .--..++.+|++++++++| |++.+..
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e 278 (359)
T 1m6e_X 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence 76554311 00 10111122222111100 0113568999999999996 4776654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-07 Score=93.97 Aligned_cols=101 Identities=17% Similarity=0.270 Sum_probs=76.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-C--CCCC-cEEEec--
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG-DAILMK-- 292 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~--~p~~-D~i~~~-- 292 (390)
++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .+|+++.+|+.+ + .+.. |+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 478999998 7777776642 579999999987 3 3344 999872
Q ss_pred ----cccc-------cCChhH-------HHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 293 ----WILH-------CWDDDH-------CLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 293 ----~vlh-------~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
.+++ +|+.++ ..++|+++.+.|||||+|++++-..
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 2232 233222 2478999999999999999876544
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.7e-08 Score=96.83 Aligned_cols=102 Identities=9% Similarity=0.095 Sum_probs=76.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCC------CCceEEECCCCC-C--CCCC-cEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG-DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~--~p~~-D~i~~~ 292 (390)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ . |+++.+|+.+ + .+.. |+|++.
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 556789999999999999999998765 68999998 7787777652 4 8999999876 3 2333 999851
Q ss_pred ------cccc-------cCChhHH-------HHHHHHHHHhCCCCcEEEEEeccc
Q 016366 293 ------WILH-------CWDDDHC-------LRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 293 ------~vlh-------~~~d~~~-------~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
.+++ .+..+.. .++|+++.+.|+|||+|+.++-..
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 2222 2222222 679999999999999998766443
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.58 E-value=4.7e-07 Score=85.47 Aligned_cols=146 Identities=14% Similarity=0.113 Sum_probs=105.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC---------------------------CCCceEEECC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------------------------YAGVEHVGGN 278 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~---------------------------~~rv~~~~gd 278 (390)
.+...|+.+|||.......+...+++++++.+|.|++++.-++ .+++.++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3567999999999999999999888999999999988765432 1578999999
Q ss_pred CCC-CC---------C-CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhh
Q 016366 279 MFE-SV---------P-EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL 346 (390)
Q Consensus 279 ~~~-~~---------p-~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~ 346 (390)
+.+ ++ . .. .++++-.+|++++.+++.++|+.+.+.+ |+|.+++.|.+.+..+.......+...+.-.
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m~~~l~~~ 254 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQSNLKES 254 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHHHHHhhcc
Confidence 987 32 1 22 7889999999999999999999999988 7888888998876322111111000000000
Q ss_pred hhhhcC-CCcccCHHHHHHHHHHCCCC
Q 016366 347 LMTRDG-GGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 347 ~~~~~~-~g~~~t~~e~~~ll~~aGf~ 372 (390)
...... .....+.++..+.|.++||+
T Consensus 255 rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 255 RNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred cCCcccccccCCCHHHHHHHHHHCCCC
Confidence 000001 12456899999999999997
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.2e-07 Score=89.84 Aligned_cols=112 Identities=8% Similarity=0.013 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC--------------------------------------CeE
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------IKA 254 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~ 254 (390)
..+..++.... +.+..+|||.+||+|.++++.+....+ .++
T Consensus 188 ~lAa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 266 (393)
T 3k0b_A 188 TMAAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI 266 (393)
T ss_dssp HHHHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence 34445555555 777889999999999999998875443 568
Q ss_pred EEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCC-cEEEeccccccC--ChhHHHHHHHHHHHhCCC--CcEE
Q 016366 255 VNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHCW--DDDHCLRILKNCYKAVPG--NGKV 320 (390)
Q Consensus 255 ~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~--~d~~~~~~L~~~~~~L~p--gG~l 320 (390)
+++|+ +.+++.|+++ ++|+++++|+.+ +.+.. |+|+++=-++.- ..++...+.+.+.+.|++ ||.+
T Consensus 267 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~ 346 (393)
T 3k0b_A 267 IGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSV 346 (393)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEE
Confidence 89998 8888887752 469999999988 44444 999998443321 224455667767667665 8888
Q ss_pred EEEec
Q 016366 321 IVMNS 325 (390)
Q Consensus 321 li~e~ 325 (390)
+++..
T Consensus 347 ~iit~ 351 (393)
T 3k0b_A 347 YVLTS 351 (393)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88654
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.47 E-value=5.8e-07 Score=86.47 Aligned_cols=114 Identities=11% Similarity=0.005 Sum_probs=84.3
Q ss_pred cHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC--------------------------------------C
Q 016366 211 STIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------I 252 (390)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~--------------------------------------~ 252 (390)
....+..++.... +.+...++|.+||+|.++++.+....+ .
T Consensus 179 ~e~LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 257 (384)
T 3ldg_A 179 KENMAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL 257 (384)
T ss_dssp CHHHHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred cHHHHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence 3344455555555 778889999999999999998875444 5
Q ss_pred eEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCC-cEEEecccccc--CChhHHHHHHHHHHHhCCC--Cc
Q 016366 253 KAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHC--WDDDHCLRILKNCYKAVPG--NG 318 (390)
Q Consensus 253 ~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~--~~d~~~~~~L~~~~~~L~p--gG 318 (390)
+++++|+ +.+++.|+++ ++++++++|+.+ +.+.. |+|+++=-++. -...+...+.+.+.+.|++ |+
T Consensus 258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~ 337 (384)
T 3ldg_A 258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTW 337 (384)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTS
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCc
Confidence 6888888 8888887752 469999999988 44444 99999844432 2345667788888888876 88
Q ss_pred EEEEEec
Q 016366 319 KVIVMNS 325 (390)
Q Consensus 319 ~lli~e~ 325 (390)
.+.++..
T Consensus 338 ~~~iit~ 344 (384)
T 3ldg_A 338 SQFILTN 344 (384)
T ss_dssp EEEEEES
T ss_pred EEEEEEC
Confidence 8888655
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-07 Score=91.34 Aligned_cols=98 Identities=15% Similarity=0.090 Sum_probs=74.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCC------CCC-cEEEec
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV------PEG-DAILMK 292 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~------p~~-D~i~~~ 292 (390)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.++++ ++++++++|+++.. +.. |+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999998 567889998 8888877752 45999999997622 223 999985
Q ss_pred cccccCCh-------hHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 293 WILHCWDD-------DHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 293 ~vlh~~~d-------~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
-.....+. ....++++++.+.|+|||.+++....
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 33222111 33557999999999999999887653
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.44 E-value=5.7e-07 Score=81.40 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=64.4
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--CCceEEECCCCC-CCCCC--c
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPEG--D 287 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--~rv~~~~gd~~~-~~p~~--D 287 (390)
....+++.++ .....+|||||||+|.++..++++ +..+++++|+ +.+++.+++. .+++++++|+.+ +++.. +
T Consensus 19 i~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 96 (249)
T 3ftd_A 19 VLKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKE 96 (249)
T ss_dssp HHHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSS
T ss_pred HHHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCC
Confidence 3456666666 567789999999999999999987 4567888888 8888887764 578999999998 66642 4
Q ss_pred EEEeccccccCChh
Q 016366 288 AILMKWILHCWDDD 301 (390)
Q Consensus 288 ~i~~~~vlh~~~d~ 301 (390)
.++..+.=++.+.+
T Consensus 97 ~~vv~NlPy~i~~~ 110 (249)
T 3ftd_A 97 LKVVGNLPYNVASL 110 (249)
T ss_dssp EEEEEECCTTTHHH
T ss_pred cEEEEECchhccHH
Confidence 55555555544443
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=5.5e-07 Score=83.41 Aligned_cols=80 Identities=11% Similarity=0.235 Sum_probs=62.7
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCC-CCCC--
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPE-- 285 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~-~~p~-- 285 (390)
++..+++.+. ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++++|+.+ +++.
T Consensus 38 i~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~~--~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~ 114 (295)
T 3gru_A 38 FVNKAVESAN-LTKDDVVLEIGLGKGILTEELAKNA--KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLD 114 (295)
T ss_dssp HHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSC
T ss_pred HHHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCC
Confidence 3456666666 6677899999999999999999984 56777776 778877765 3789999999998 7775
Q ss_pred CcEEEeccccc
Q 016366 286 GDAILMKWILH 296 (390)
Q Consensus 286 ~D~i~~~~vlh 296 (390)
.|+|+++-.++
T Consensus 115 fD~Iv~NlPy~ 125 (295)
T 3gru_A 115 FNKVVANLPYQ 125 (295)
T ss_dssp CSEEEEECCGG
T ss_pred ccEEEEeCccc
Confidence 39998775544
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.42 E-value=9.5e-08 Score=92.67 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=74.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------C-CceEEECCCCCCC------CCC-cEEEe
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFESV------PEG-DAILM 291 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~-rv~~~~gd~~~~~------p~~-D~i~~ 291 (390)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ + +++++++|+++.. +.. |+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5689999999999999999987 3457899998 7888877652 2 7999999987622 223 99998
Q ss_pred ccccccCCh-------hHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 292 KWILHCWDD-------DHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 292 ~~vlh~~~d-------~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.-..+..+. .....++.++.+.|+|||.++++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 543322211 34568999999999999998877653
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.6e-07 Score=92.39 Aligned_cols=110 Identities=18% Similarity=0.109 Sum_probs=79.8
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-------------CCCeEEEecc-hHHHhhCCCC------C--Cc
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------------PQIKAVNFDL-PHVVQDAPSY------A--GV 272 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-------------p~~~~~~~Dl-~~~~~~a~~~------~--rv 272 (390)
+..+++.+. .....+|+|.|||+|.++..+++.. +..+++++|+ +.+++.|+.. . ++
T Consensus 160 ~~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~ 238 (445)
T 2okc_A 160 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 238 (445)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCC
Confidence 344455444 4556799999999999999988753 3456888887 7777776531 2 68
Q ss_pred eEEECCCCC-CCCCC-cEEEeccccccCChh---------------HHHHHHHHHHHhCCCCcEEEEEec
Q 016366 273 EHVGGNMFE-SVPEG-DAILMKWILHCWDDD---------------HCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 273 ~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d~---------------~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
.++++|.+. +.... |+|+++-.++..... .-..+++++.+.|+|||+++++.+
T Consensus 239 ~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 239 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 899999988 44334 999998666543211 123789999999999999988764
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.1e-07 Score=88.10 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=73.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCCcEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEGDAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~D~i~~~~vlh~ 297 (390)
.++.+|||+|||+|.++.. ++ ...+++++|+ +.+++.++++ ++++++++|+++.....|+|++.-.-+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~~- 269 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPKF- 269 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTTT-
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcHh-
Confidence 4668999999999999999 77 4678999998 8888877652 579999999987442339999853211
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
..++++.+.+.|+|||.+++.+...
T Consensus 270 -----~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 270 -----AHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp -----GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred -----HHHHHHHHHHHcCCCCEEEEEEeec
Confidence 2278999999999999999877653
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.9e-07 Score=91.62 Aligned_cols=103 Identities=13% Similarity=0.107 Sum_probs=75.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCC------CCCceEEECCCCC-C--CCCC-cEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-S--VPEG-DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~--~p~~-D~i~~~ 292 (390)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ ..+|.++.+|..+ + .+.. |+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 566789999999999999999998654 68999998 777776664 2578999999876 2 3333 999873
Q ss_pred c------ccccCCh-------hH-------HHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 293 W------ILHCWDD-------DH-------CLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 293 ~------vlh~~~d-------~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
- ++..-++ +. ..++|+++.+.|+|||+|+.++-..
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 2 2222111 11 1378999999999999998766443
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.37 E-value=6.3e-07 Score=86.41 Aligned_cols=112 Identities=16% Similarity=0.078 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC--------------------------------------CeE
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------IKA 254 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~ 254 (390)
..+..++.... +.+..+|||.+||+|.++++++....+ .++
T Consensus 182 ~lAa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 260 (385)
T 3ldu_A 182 TLAAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI 260 (385)
T ss_dssp HHHHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred HHHHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence 34445555544 777889999999999999998876432 568
Q ss_pred EEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCC-cEEEeccccccC--ChhHHHHHHHHHHHhCCC--CcEE
Q 016366 255 VNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHCW--DDDHCLRILKNCYKAVPG--NGKV 320 (390)
Q Consensus 255 ~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~--~d~~~~~~L~~~~~~L~p--gG~l 320 (390)
+++|+ +.+++.|+++ ++|++.++|+.+ +.+.. |+|+++=-++.- ..++...+.+.+.+.|++ |+.+
T Consensus 261 ~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~ 340 (385)
T 3ldu_A 261 YGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSY 340 (385)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEE
Confidence 89998 8899888763 369999999988 44444 999997554321 134566777777777776 8888
Q ss_pred EEEec
Q 016366 321 IVMNS 325 (390)
Q Consensus 321 li~e~ 325 (390)
.++..
T Consensus 341 ~iit~ 345 (385)
T 3ldu_A 341 YLITS 345 (385)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 87654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-07 Score=90.60 Aligned_cols=99 Identities=14% Similarity=0.045 Sum_probs=73.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------C-CceEEECCCCCCC------CCC-cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------A-GVEHVGGNMFESV------PEG-DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~-rv~~~~gd~~~~~------p~~-D~i 289 (390)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++ + +++++++|+++.. +.. |+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 356799999999999999999874 457889998 7788777642 2 7899999987632 223 999
Q ss_pred EeccccccCC-------hhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 290 LMKWILHCWD-------DDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 290 ~~~~vlh~~~-------d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
++.-.....+ .....+++.++.+.|+|||.+++...
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9863221110 13355899999999999999888654
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-07 Score=91.92 Aligned_cols=99 Identities=9% Similarity=0.025 Sum_probs=72.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------C--CceEEECCCCCCCC------CC-cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A--GVEHVGGNMFESVP------EG-DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~--rv~~~~gd~~~~~p------~~-D~i 289 (390)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.|+++ + +++++++|+++.++ .. |+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 356799999999999999999863 237889998 8888877752 2 89999999876221 23 999
Q ss_pred Eecccc-----ccCC--hhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 290 LMKWIL-----HCWD--DDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 290 ~~~~vl-----h~~~--d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
++.-.. +... -....++++.+.+.|+|||.+++...
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 985333 1222 12345688999999999999887654
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.34 E-value=5.2e-07 Score=87.16 Aligned_cols=98 Identities=13% Similarity=0.080 Sum_probs=71.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCC---CCCC-cEEEeccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES---VPEG-DAILMKWILH 296 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~---~p~~-D~i~~~~vlh 296 (390)
++.+|||+|||+|.++..+++... +++++|+ +.+++.++++ -..++.++|+++. .+.. |+|++.-...
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 478999999999999999998754 4889998 8888887753 1245778998762 2333 9998864331
Q ss_pred cCCh-------hHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 297 CWDD-------DHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 297 ~~~d-------~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
..+. ....++++.+.+.|+|||+|+++...
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1111 22357899999999999999876554
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-06 Score=80.60 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=64.3
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCC-CCCC--C-
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPE--G- 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~-~~p~--~- 286 (390)
+..+++.+. ..+. +|||||||+|.++..++++.. +++++|+ +.+++.+++. ++++++++|+.+ +++. .
T Consensus 36 ~~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~~--~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 36 LRRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAGA--EVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTTC--CEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 345666666 5666 999999999999999999864 5666666 7787776642 689999999988 6653 2
Q ss_pred cEEEeccccccCChhHHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKN 309 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~ 309 (390)
|.|+.+ .=++.+.+-..++|..
T Consensus 112 ~~iv~N-lPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SLLVAN-LPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEEEE-ECSSCCHHHHHHHHHH
T ss_pred cEEEec-CcccccHHHHHHHhcC
Confidence 665544 4445666555555544
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.5e-06 Score=85.21 Aligned_cols=99 Identities=21% Similarity=0.264 Sum_probs=70.4
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCC----
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP---- 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p---- 284 (390)
..+++.++ ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|+++ ++++|+.+|+++.++
T Consensus 276 ~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 276 ARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 34445554 556689999999999999999987 567899998 8888887752 579999999987432
Q ss_pred -C-C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 285 -E-G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 285 -~-~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
. . |+|++.--... +..+++.+.+ ++|++.+++.
T Consensus 353 ~~~~fD~Vv~dPPr~g-----~~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 353 AKNGFDKVLLDPARAG-----AAGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp GTTCCSEEEECCCTTC-----CHHHHHHHHH-HCCSEEEEEE
T ss_pred hcCCCCEEEECCCCcc-----HHHHHHHHHh-cCCCeEEEEE
Confidence 2 2 99987533222 1245555543 6888877763
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2.8e-06 Score=82.90 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=67.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC-CcEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-GDAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~-~D~i~~~~vlh~ 297 (390)
.+..+|||+|||+|.++..+++.. .+++++|+ +.+++.|+++ + ++++.+|+++..+. .|+|++.-....
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~--~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRG--FNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 456799999999999999999874 47888887 8888887753 3 89999999884443 499998544322
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
... .+++.+. .|+|||.+++..
T Consensus 366 ~~~----~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 366 LHP----RLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp SCH----HHHHHHH-HHCCSEEEEEES
T ss_pred hHH----HHHHHHH-hcCCCcEEEEEC
Confidence 221 3555554 489999988753
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.29 E-value=8.6e-07 Score=81.57 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=75.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-----------CCCceEEECCCCCCCCC---C-cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESVPE---G-DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------~~rv~~~~gd~~~~~p~---~-D~i 289 (390)
+++.+||-||+|.|..++++++..+..+++.+|+ |.+++.+++ .+|++++.+|..+-+.. . |+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 5678999999999999999998877778888888 888887764 37999999999884332 2 999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhCCCCcEEEEEec
Q 016366 290 LMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 290 ~~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
+....=..-+.. -...+++.|+++|+|||.++....
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence 865431111110 123789999999999999887543
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.5e-06 Score=76.13 Aligned_cols=109 Identities=13% Similarity=0.052 Sum_probs=69.0
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHh-hCCCC----CCceEEECCCCC-CCCC-
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQ-DAPSY----AGVEHVGGNMFE-SVPE- 285 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~-~a~~~----~rv~~~~gd~~~-~~p~- 285 (390)
+.+.++.+... +.+..+|||+|||+|.++..++++.+...++++|+..-+. ..... .++.....++.. .++.
T Consensus 61 ~KL~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~ 139 (277)
T 3evf_A 61 AKLRWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPV 139 (277)
T ss_dssp HHHHHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCC
Confidence 34456666633 6777899999999999999888776554555666521111 11111 145555665533 4443
Q ss_pred -CcEEEeccccc---cCChh-HHHHHHHHHHHhCCCC-cEEEE
Q 016366 286 -GDAILMKWILH---CWDDD-HCLRILKNCYKAVPGN-GKVIV 322 (390)
Q Consensus 286 -~D~i~~~~vlh---~~~d~-~~~~~L~~~~~~L~pg-G~lli 322 (390)
.|+|++....+ ++-|+ ....+|+.+.+.|+|| |.+++
T Consensus 140 ~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 140 KCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 39999987555 11122 2234689999999999 99887
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.4e-07 Score=83.53 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=54.3
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC--CeEEEecc-hHHHhhCCCC--CCceEEECCCCC-CCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVP 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~--~~~~~~Dl-~~~~~~a~~~--~rv~~~~gd~~~-~~p 284 (390)
..+++.+. ..+..+|||||||+|.++..++++.+. .+++++|+ +.+++.+++. ++++++++|+.+ +++
T Consensus 32 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 32 DAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 45666665 667789999999999999999998764 44677776 8888887764 689999999987 654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=6.4e-07 Score=92.88 Aligned_cols=99 Identities=11% Similarity=0.109 Sum_probs=73.7
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCCC---CCCC-cEEEecc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFES---VPEG-DAILMKW 293 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~~---~p~~-D~i~~~~ 293 (390)
.+.+|||+|||+|.++..++.... .+++++|+ +.+++.++++ ++++++++|+++. .... |+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 567999999999999999988543 46899998 7888877752 3799999999872 2223 9999854
Q ss_pred cccc--------CC-hhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 294 ILHC--------WD-DDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 294 vlh~--------~~-d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.... +. .....++++.+.+.|+|||+|++....
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 2210 11 134568899999999999999965543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.5e-06 Score=78.86 Aligned_cols=68 Identities=12% Similarity=0.222 Sum_probs=54.4
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCC-CCC
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVP 284 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~-~~p 284 (390)
++..+++.+. ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 17 i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 17 VLQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 3455666666 6677899999999999999999986 56777777 888887765 3689999999988 654
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-06 Score=79.58 Aligned_cols=91 Identities=8% Similarity=0.068 Sum_probs=61.5
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----CCceEEECCCCC-CCCC--
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPE-- 285 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~-~~p~-- 285 (390)
+...+++.+. ..+..+|||||||+|.++. +. +.+..+++++|+ +.+++.++++ ++++++.+|+.+ +++.
T Consensus 9 i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~ 85 (252)
T 1qyr_A 9 VIDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred HHHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhh
Confidence 4456666665 6677899999999999999 54 555534788887 8888887764 479999999987 5432
Q ss_pred ----CcEEEeccccccCChhHHHHHH
Q 016366 286 ----GDAILMKWILHCWDDDHCLRIL 307 (390)
Q Consensus 286 ----~D~i~~~~vlh~~~d~~~~~~L 307 (390)
.+.++.++.=++.+.+-..++|
T Consensus 86 ~~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 86 EKMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred cccCCceEEEECCCCCccHHHHHHHH
Confidence 2344444444444444333333
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-06 Score=89.00 Aligned_cols=126 Identities=20% Similarity=0.230 Sum_probs=81.6
Q ss_pred hhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhc---cCCcceEEEEcCCccHHHHHHHh---h-CCCCeEEEecchH
Q 016366 189 IFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEG---FQNVERLVDVGGGFGVTLSMITS---K-YPQIKAVNFDLPH 261 (390)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~---~~~~~~iLDiG~G~G~~~~~l~~---~-~p~~~~~~~Dl~~ 261 (390)
.|+-+++|+.....|.+++.. .+.+..+. ..+...|||||||+|-++...++ + .-++++.+++-..
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred hhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 466677888877777776522 22222221 22446799999999987444433 3 2334678888644
Q ss_pred HHhhCCC-------CCCceEEECCCCC-CCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEE
Q 016366 262 VVQDAPS-------YAGVEHVGGNMFE-SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 262 ~~~~a~~-------~~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ll 321 (390)
+...+++ .++|+++.+|+++ .+|+- |+|++-..=...-.+-...+|....+.|||||.++
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 5555443 2679999999999 88865 99976532111222334467888889999999764
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=8.3e-05 Score=69.83 Aligned_cols=145 Identities=12% Similarity=0.164 Sum_probs=103.1
Q ss_pred CcceEEEEcCCccHHHHHHHhh-CCCCeEEEecchHHHhhCC-----------------------------CCCCceEEE
Q 016366 227 NVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDLPHVVQDAP-----------------------------SYAGVEHVG 276 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl~~~~~~a~-----------------------------~~~rv~~~~ 276 (390)
+...|+-+|||.=.....+... .++++++.+|.|++++.-+ ..++..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4678999999999888888765 3688999999998876421 135788999
Q ss_pred CCCCC--C---------CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhh
Q 016366 277 GNMFE--S---------VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL 343 (390)
Q Consensus 277 gd~~~--~---------~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~ 343 (390)
.|+.+ . ++.. -++++-.++.+++.+++.++|+.+.+..+ +|.+++.|.+.++++. ...|
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d~f-------g~~M 241 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGDRF-------GQIM 241 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTSHH-------HHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCCHH-------HHHH
Confidence 99976 2 2222 68888999999999999999999999875 5667778988554311 1111
Q ss_pred hhhhhhh---cCC-CcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 344 DVLLMTR---DGG-GRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 344 d~~~~~~---~~~-g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
--++-.. ..+ ...++.++..+.|.++||+.+++..+
T Consensus 242 ~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 242 IENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 1111000 001 13467899999999999998776654
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.2e-06 Score=77.83 Aligned_cols=121 Identities=14% Similarity=0.105 Sum_probs=77.5
Q ss_pred CcceEEEEcCCccHHHHHHHhh-------CCC-----CeEEEecc-h---HHHhh-----------CC------------
Q 016366 227 NVERLVDVGGGFGVTLSMITSK-------YPQ-----IKAVNFDL-P---HVVQD-----------AP------------ 267 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~-------~p~-----~~~~~~Dl-~---~~~~~-----------a~------------ 267 (390)
+..+|||||+|+|..+..+++. .|+ ++++.++. | +.++. ++
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988887664 674 57888885 3 22221 11
Q ss_pred --------CCCCceEEECCCCCC---CCC----C-cEEEecc-ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCC
Q 016366 268 --------SYAGVEHVGGNMFES---VPE----G-DAILMKW-ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI 330 (390)
Q Consensus 268 --------~~~rv~~~~gd~~~~---~p~----~-D~i~~~~-vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 330 (390)
...+++++.||+.+- ++. . |+|++.- .-...|+-....+|+.+++.|+|||.|+... .
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys----a- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT----S- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC----C-
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe----C-
Confidence 113577899998652 322 3 9988752 1111122123478999999999999987411 0
Q ss_pred CCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 331 PEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 331 ~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
...+++.|.++||++.++...+
T Consensus 215 ----------------------------a~~vrr~L~~aGF~v~~~~g~~ 236 (257)
T 2qy6_A 215 ----------------------------AGFVRRGLQEAGFTMQKRKGFG 236 (257)
T ss_dssp ----------------------------BHHHHHHHHHHTEEEEEECCST
T ss_pred ----------------------------CHHHHHHHHHCCCEEEeCCCCC
Confidence 0135677888999977664444
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.05 E-value=5.9e-06 Score=83.84 Aligned_cols=126 Identities=14% Similarity=0.101 Sum_probs=78.0
Q ss_pred hhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhh----C---------CCCeEE
Q 016366 189 IFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSK----Y---------PQIKAV 255 (390)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~----~---------p~~~~~ 255 (390)
.|+-+.+|+.+...|.+++.. .+.+..++..+...|||||||+|-++...+++ . ...+++
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~-------al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy 450 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVG-------ALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY 450 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHH-------HHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred HHHHHcCChhhHHHHHHHHHH-------HHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence 355566677666666666532 12222221123568999999999986543222 1 235788
Q ss_pred Eecc-hHHHhhCCC------CCCceEEECCCCC-CC------CC-CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEE
Q 016366 256 NFDL-PHVVQDAPS------YAGVEHVGGNMFE-SV------PE-GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKV 320 (390)
Q Consensus 256 ~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~~------p~-~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l 320 (390)
+++- +.++...+. .++|+++.+|+++ .+ |+ .|+|++-..=.....+-....|..+.+.|+|||.+
T Consensus 451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~ 530 (745)
T 3ua3_A 451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTIS 530 (745)
T ss_dssp EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEE
T ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEE
Confidence 8886 322222111 2679999999998 56 44 49998765522223343456788888999999975
Q ss_pred E
Q 016366 321 I 321 (390)
Q Consensus 321 l 321 (390)
+
T Consensus 531 i 531 (745)
T 3ua3_A 531 I 531 (745)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=5.7e-06 Score=76.85 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=60.8
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-C--CC--
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-S--VP-- 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~--~p-- 284 (390)
..+++.+. ..+..+|||+|||+|.++..+++++|+.+++++|. +.+++.++++ ++++++++|+.+ + ++
T Consensus 16 ~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~ 94 (301)
T 1m6y_A 16 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL 94 (301)
T ss_dssp HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhc
Confidence 45556665 56678999999999999999999998889999998 8888877652 589999999875 3 11
Q ss_pred ---CCcEEEecc
Q 016366 285 ---EGDAILMKW 293 (390)
Q Consensus 285 ---~~D~i~~~~ 293 (390)
..|+|++.-
T Consensus 95 g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 95 GIEKVDGILMDL 106 (301)
T ss_dssp TCSCEEEEEEEC
T ss_pred CCCCCCEEEEcC
Confidence 228887644
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=1.9e-05 Score=81.90 Aligned_cols=112 Identities=13% Similarity=0.013 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC------------------------------------------C
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY------------------------------------------P 250 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~------------------------------------------p 250 (390)
..+..++.... +.+..+|||.+||+|.++++.+... +
T Consensus 177 ~LAa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~ 255 (703)
T 3v97_A 177 TLAAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEY 255 (703)
T ss_dssp HHHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccC
Confidence 34445555555 7778899999999999999877642 3
Q ss_pred CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCC--C-C-cEEEecccccc--CChhHHHHHHHHHHH---
Q 016366 251 QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP--E-G-DAILMKWILHC--WDDDHCLRILKNCYK--- 312 (390)
Q Consensus 251 ~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p--~-~-D~i~~~~vlh~--~~d~~~~~~L~~~~~--- 312 (390)
+.+++++|+ +.+++.|+.+ +.|++.++|+.+ ..| . . |+|+++=-+.. -.+.+...+.+.+.+
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk 335 (703)
T 3v97_A 256 SSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK 335 (703)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHH
Confidence 367888888 8898888753 358999999976 333 2 3 99999833322 223344455554444
Q ss_pred hCCCCcEEEEEec
Q 016366 313 AVPGNGKVIVMNS 325 (390)
Q Consensus 313 ~L~pgG~lli~e~ 325 (390)
.+.|||+++|+..
T Consensus 336 ~~~~g~~~~ilt~ 348 (703)
T 3v97_A 336 NQFGGWNLSLFSA 348 (703)
T ss_dssp HHCTTCEEEEEES
T ss_pred hhCCCCeEEEEeC
Confidence 4458999888654
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.93 E-value=2.2e-05 Score=73.27 Aligned_cols=101 Identities=14% Similarity=0.096 Sum_probs=68.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCC----CC-cEEE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVP----EG-DAIL 290 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p----~~-D~i~ 290 (390)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ .+|+++.+|+.+ +.. .. |.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4567899999999999999999874 5578999998 7777766542 579999999876 221 22 9998
Q ss_pred ec------cccccCChh---------H-------HHHHHHHHHHhCCCCcEEEEEecc
Q 016366 291 MK------WILHCWDDD---------H-------CLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 291 ~~------~vlh~~~d~---------~-------~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+. .++...+|. + -.++|+++.+.++ ||+|+.++-.
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 62 222221111 1 1357888888886 8987765543
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.3e-05 Score=72.40 Aligned_cols=111 Identities=15% Similarity=0.109 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecch-HHHhhCCC----CCCceEEE-C-CCCCCCCC
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP-HVVQDAPS----YAGVEHVG-G-NMFESVPE 285 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~-~~~~~a~~----~~rv~~~~-g-d~~~~~p~ 285 (390)
+.+.++.+.+. +.+..+|||||||.|.++...+++.+-..++++|+. .+...+.. ..++.... . |+. .++.
T Consensus 77 fKL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~-~l~~ 154 (282)
T 3gcz_A 77 AKLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVF-NMEV 154 (282)
T ss_dssp HHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGG-GSCC
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchh-hcCC
Confidence 44557777774 777889999999999999998887776667788872 22222221 11233333 2 333 2332
Q ss_pred --CcEEEeccccc----cCChhHHHHHHHHHHHhCCCC--cEEEEEec
Q 016366 286 --GDAILMKWILH----CWDDDHCLRILKNCYKAVPGN--GKVIVMNS 325 (390)
Q Consensus 286 --~D~i~~~~vlh----~~~d~~~~~~L~~~~~~L~pg--G~lli~e~ 325 (390)
.|+|++.-..+ .........+|.-+.+.|+|| |.+++--+
T Consensus 155 ~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 155 IPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 39999887665 111122235788889999999 99887433
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1e-05 Score=77.71 Aligned_cols=92 Identities=10% Similarity=0.002 Sum_probs=69.7
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---------------------CCceEEECCCCCC--
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------------AGVEHVGGNMFES-- 282 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---------------------~rv~~~~gd~~~~-- 282 (390)
.+.+|||+|||+|..+..++++.+..+++.+|+ +.+++.++++ .+++++++|+.+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 457999999999999999999988888999998 7777665531 2388999998652
Q ss_pred -CCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 283 -VPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 283 -~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.+.. |+|++. ... . ...+|..+.+.|+|||.+++..
T Consensus 127 ~~~~~fD~I~lD-P~~---~--~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLD-PFG---S--PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEEC-CSS---C--CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeC-CCC---C--HHHHHHHHHHhcCCCCEEEEEe
Confidence 2333 998853 221 1 1378999999999999877754
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.88 E-value=4.3e-06 Score=80.12 Aligned_cols=87 Identities=11% Similarity=0.079 Sum_probs=62.2
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCC---CC-------------
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VP------------- 284 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~---~p------------- 284 (390)
..+|||+|||+|.++..+++.. .+++++|+ +.+++.|+++ ++++++.+|+++. ++
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 4689999999999999998864 47888887 8888877642 5799999998652 11
Q ss_pred --CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 285 --EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 285 --~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.. |+|++.---. .+..++.+.|+|+|+++++.
T Consensus 292 ~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 292 KSYQCETIFVDPPRS--------GLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp GGCCEEEEEECCCTT--------CCCHHHHHHHTTSSEEEEEE
T ss_pred ccCCCCEEEECcCcc--------ccHHHHHHHHhCCCEEEEEE
Confidence 13 8887642211 23445566667888887654
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.88 E-value=2e-05 Score=71.63 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=67.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-h-------HHHhhCCCC-------CCceEEECCCCCC---CC--
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P-------HVVQDAPSY-------AGVEHVGGNMFES---VP-- 284 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~-------~~~~~a~~~-------~rv~~~~gd~~~~---~p-- 284 (390)
..+..+|||+|||+|..+..+++. ..+++++|+ + .+++.++++ .+|+++++|+.+. ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 345579999999999999999986 357888888 7 777777653 4699999998762 33
Q ss_pred -C-CcEEEeccccccCC------------------hhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 285 -E-GDAILMKWILHCWD------------------DDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 285 -~-~D~i~~~~vlh~~~------------------d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
. .|+|++.-.+++-. +.+...+++.+.+..+ .+++|..+..
T Consensus 159 ~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~--~~vvvk~p~~ 219 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK--KRVVVKRPRL 219 (258)
T ss_dssp HCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS--SEEEEEEETT
T ss_pred CCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC--cEEEEEcCCC
Confidence 3 39999876554421 1223456666666653 3566655543
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00028 Score=65.64 Aligned_cols=144 Identities=10% Similarity=0.032 Sum_probs=95.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC---------CCCceEEECCCCCCCC----------CC-
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFESVP----------EG- 286 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~---------~~rv~~~~gd~~~~~p----------~~- 286 (390)
+...||+||||-=.....+.. .++++++.+|.|.+++..++ .++..++..|+.+.+. ..
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 180 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence 456899999998877666542 12489999999988876543 3568899999976311 11
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhh-hhh-hhh-----hcCCCcc-cC
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL-DVL-LMT-----RDGGGRE-RT 358 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~-d~~-~~~-----~~~~g~~-~t 358 (390)
-++++-.++|++++++...+|+.+.+.+.||+.++ .|.+.++.+.. ........ ... -.. ....... ++
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~-~d~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 257 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIA-VETSPLHGDEW--REQMQLRFRRVSDALGFEQAVDVQELIYHDE 257 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEE-EECCCTTCSHH--HHHHHHHHHHHHC-----------CCTTCCT
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEE-EEecCCCCcch--hHHHHHHHHHHHHHcCCcCCCCccccccCCC
Confidence 57889999999999999999999999999988765 56554442100 00001011 000 000 0001122 36
Q ss_pred -HHHHHHHHHHCCCCee
Q 016366 359 -KKEYTELAIAAGFKGI 374 (390)
Q Consensus 359 -~~e~~~ll~~aGf~~~ 374 (390)
.++..++|.+.||+.+
T Consensus 258 ~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 258 NRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TCCCHHHHHTTTTEEEE
T ss_pred ChHHHHHHHHHCcCccc
Confidence 7899999999999987
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.69 E-value=3.8e-05 Score=77.17 Aligned_cols=109 Identities=14% Similarity=0.088 Sum_probs=75.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC------------------CCeEEEecc-hHHHhhCCC------CC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP------------------QIKAVNFDL-PHVVQDAPS------YA 270 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p------------------~~~~~~~Dl-~~~~~~a~~------~~ 270 (390)
..+++.+. .....+|+|.+||+|.++..+.+... ..+++++|+ +.+++.|+. ..
T Consensus 159 ~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~ 237 (541)
T 2ar0_A 159 KTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 237 (541)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 33444444 44567999999999999988876531 236788887 777776653 23
Q ss_pred C-----ceEEECCCCC-C-CC--CCcEEEeccccccCCh------------hHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 271 G-----VEHVGGNMFE-S-VP--EGDAILMKWILHCWDD------------DHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 271 r-----v~~~~gd~~~-~-~p--~~D~i~~~~vlh~~~d------------~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
. +.+.++|.+. + .+ ..|+|+++=.+..... ..-..++.++.+.|+|||++.++-+
T Consensus 238 ~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 238 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 3 7899999987 3 22 2399998754443211 1123789999999999999988744
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=1.9e-05 Score=75.98 Aligned_cols=93 Identities=11% Similarity=0.014 Sum_probs=70.4
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCC-------CC-ceEEECCCCCC----CCCC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-------AG-VEHVGGNMFES----VPEG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~-------~r-v~~~~gd~~~~----~p~~-D~i~ 290 (390)
.++.+|||++||+|.++..++++.++ .+++.+|+ +..++.++++ ++ ++++.+|.++- .+.. |+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 34679999999999999999998655 57899998 7777777652 34 89999998652 2223 9998
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+.= . ... ..++..+.+.|+|||.|++..
T Consensus 131 lDP-~---g~~--~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP-F---GTP--VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC-S---SCC--HHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC-C---cCH--HHHHHHHHHHhCCCCEEEEEe
Confidence 764 1 111 268999999999999877755
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00018 Score=58.51 Aligned_cols=83 Identities=19% Similarity=0.166 Sum_probs=58.6
Q ss_pred CCcceEEEEcCCcc-HHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCC---CC-cEEEeccccccCC
Q 016366 226 QNVERLVDVGGGFG-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP---EG-DAILMKWILHCWD 299 (390)
Q Consensus 226 ~~~~~iLDiG~G~G-~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p---~~-D~i~~~~vlh~~~ 299 (390)
....++||||||.| ..+..|++. .+..++++|+ |..++ +++.|++++.. .+ |+|+..+ |
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir-----P 98 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR-----P 98 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----C
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----C
Confidence 35679999999999 688888874 2567888886 54433 89999999655 24 9998766 4
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 300 DDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 300 d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
+.+....+.++.+.. |.-++|...
T Consensus 99 P~El~~~i~~lA~~v--~adliI~pL 122 (153)
T 2k4m_A 99 PAEIHSSLMRVADAV--GARLIIKPL 122 (153)
T ss_dssp CTTTHHHHHHHHHHH--TCEEEEECB
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 455566666666665 455665443
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00027 Score=66.82 Aligned_cols=96 Identities=9% Similarity=0.039 Sum_probs=66.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCC-CCCCC--cEEEeccccccCChh
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDD 301 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~ 301 (390)
+.++.++||+||++|.++..++++ ..+++++|...+-......++|+++.+|.++ ..+.. |+|+|..+.+ ..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence 457889999999999999999987 4789999975555555567899999999998 43333 9999887653 23
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEec
Q 016366 302 HCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 302 ~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
....++.+.......++.++....
T Consensus 284 ~~~~l~~~wl~~~~~~~aI~~lKL 307 (375)
T 4auk_A 284 KVAALMAQWLVNGWCRETIFNLKL 307 (375)
T ss_dssp HHHHHHHHHHHTTSCSEEEEEEEC
T ss_pred HhHHHHHHHHhccccceEEEEEEe
Confidence 333444443333333354444433
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00043 Score=63.03 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchH-HHhhCCC----CCC-ceEEEC-CCCCCCCC
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPH-VVQDAPS----YAG-VEHVGG-NMFESVPE 285 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~-~~~~a~~----~~r-v~~~~g-d~~~~~p~ 285 (390)
+.+.++.+. .-+.+..++||+||++|.++..++++.+-..++++|+.. ....... ..+ +.+..+ |+..-.+.
T Consensus 68 ~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~ 146 (300)
T 3eld_A 68 AKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTE 146 (300)
T ss_dssp HHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCC
Confidence 344556565 435677899999999999999999876655677788732 1111110 112 233333 44431222
Q ss_pred -CcEEEeccccccCC----hh-HHHHHHHHHHHhCCCC-cEEEEEe
Q 016366 286 -GDAILMKWILHCWD----DD-HCLRILKNCYKAVPGN-GKVIVMN 324 (390)
Q Consensus 286 -~D~i~~~~vlh~~~----d~-~~~~~L~~~~~~L~pg-G~lli~e 324 (390)
.|+|++.-.-+ -. |+ ....+|.-+.+.|+|| |.+++--
T Consensus 147 ~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~Kv 191 (300)
T 3eld_A 147 PSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKV 191 (300)
T ss_dssp CCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEE
T ss_pred CcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 39999875554 21 11 2245688889999999 9988753
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=4.3e-05 Score=72.53 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=69.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------------CCceEEECCCCCCC---C---C
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFESV---P---E 285 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------------~rv~~~~gd~~~~~---p---~ 285 (390)
++.+||-||+|.|..++++++. |..+++.+|+ |.+++.++++ +|++++.+|..+-+ + .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4689999999999999999975 4568888888 8898877651 46899999987522 1 1
Q ss_pred -CcEEEecccccc--------CChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 286 -GDAILMKWILHC--------WDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 286 -~D~i~~~~vlh~--------~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.|+|+..-.=.. ....-...+++.++++|+|||.++..
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 299987532111 01112357899999999999988764
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0011 Score=60.10 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHH-Hh---hCCCC--CCceEEEC-CCCC-CCC
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHV-VQ---DAPSY--AGVEHVGG-NMFE-SVP 284 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~-~~---~a~~~--~rv~~~~g-d~~~-~~p 284 (390)
+.+.++.+.+. +....+||||||++|.++...+....-.+++++|+... .+ ..++. .-|.++.+ |++. +..
T Consensus 81 ~KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~ 159 (321)
T 3lkz_A 81 AKLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSE 159 (321)
T ss_dssp HHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCC
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCC
Confidence 44556666655 67778999999999999997777665557899997222 11 11122 33889988 8766 322
Q ss_pred CCcEEEeccccccCChhH-----HHHHHHHHHHhCCCC-cEEEE
Q 016366 285 EGDAILMKWILHCWDDDH-----CLRILKNCYKAVPGN-GKVIV 322 (390)
Q Consensus 285 ~~D~i~~~~vlh~~~d~~-----~~~~L~~~~~~L~pg-G~lli 322 (390)
..|+|+|.-. .--+.+. ..++|.-+.+.|++| |.++|
T Consensus 160 ~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 160 CCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 3499888755 3333322 234778888999998 88877
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00093 Score=58.62 Aligned_cols=107 Identities=14% Similarity=0.153 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhh----CCCC--CCceEEEC-CCCC-CCC
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQD----APSY--AGVEHVGG-NMFE-SVP 284 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~----a~~~--~rv~~~~g-d~~~-~~p 284 (390)
+...++.+.+. +....+|||+||++|.++...+....-.+++++|+...-.. .+.+ +.|+|.++ |++. +..
T Consensus 65 ~KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~ 143 (267)
T 3p8z_A 65 AKLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPE 143 (267)
T ss_dssp HHHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCC
T ss_pred HHHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCc
Confidence 44567777774 77888999999999999998877765557999998322111 1112 56999999 9765 222
Q ss_pred CCcEEEeccccccCCh----h-HHHHHHHHHHHhCCCCcEEEE
Q 016366 285 EGDAILMKWILHCWDD----D-HCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 285 ~~D~i~~~~vlh~~~d----~-~~~~~L~~~~~~L~pgG~lli 322 (390)
..|.|+|.-.= --+. + ...++|.-+.++|++ |.++|
T Consensus 144 ~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~ 184 (267)
T 3p8z_A 144 KCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCI 184 (267)
T ss_dssp CCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred cccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence 35998876432 1222 1 123477888899999 77776
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0006 Score=68.31 Aligned_cols=98 Identities=16% Similarity=0.131 Sum_probs=70.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhC---CCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCC-CCC---C--CcE
Q 016366 227 NVERLVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE-SVP---E--GDA 288 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~---p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~-~~p---~--~D~ 288 (390)
...+|+|.+||+|.++..+++.. +..+++++|+ +.+...|+.+ +++.+.++|.+. ++| . .|+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 56799999999999999998874 3567888888 7777766531 357899999987 433 2 299
Q ss_pred EEeccccc-cC------------------C---hhHHHHHHHHHHHhCC-CCcEEEEEec
Q 016366 289 ILMKWILH-CW------------------D---DDHCLRILKNCYKAVP-GNGKVIVMNS 325 (390)
Q Consensus 289 i~~~~vlh-~~------------------~---d~~~~~~L~~~~~~L~-pgG~lli~e~ 325 (390)
|+++=-+. .| + ..+ ..++.++.+.|+ |||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEEEEec
Confidence 99762211 11 1 111 258999999999 9999887544
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00011 Score=73.91 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=72.6
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC---------------CCeEEEecc-hHHHhhCCCC-------C
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP---------------QIKAVNFDL-PHVVQDAPSY-------A 270 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p---------------~~~~~~~Dl-~~~~~~a~~~-------~ 270 (390)
++..+++.+. . ...+|+|.+||+|.++..+++..+ ..+++++|+ +.+++.|+.+ .
T Consensus 233 Vv~lmv~ll~-p-~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~ 310 (544)
T 3khk_A 233 IVTLIVEMLE-P-YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDF 310 (544)
T ss_dssp HHHHHHHHHC-C-CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHh-c-CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 3444555544 2 234999999999999988765432 467899998 7777776631 2
Q ss_pred CceEEECCCCC-C-CCC-C-cEEEecccccc--CChh-------------------------HHHHHHHHHHHhCCCCcE
Q 016366 271 GVEHVGGNMFE-S-VPE-G-DAILMKWILHC--WDDD-------------------------HCLRILKNCYKAVPGNGK 319 (390)
Q Consensus 271 rv~~~~gd~~~-~-~p~-~-D~i~~~~vlh~--~~d~-------------------------~~~~~L~~~~~~L~pgG~ 319 (390)
++.+.++|.+. + .+. . |+|+++=-+.. |..+ .-..++.++.+.|+|||+
T Consensus 311 ~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr 390 (544)
T 3khk_A 311 NFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGS 390 (544)
T ss_dssp BCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEE
T ss_pred ccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCce
Confidence 35558889876 4 232 2 99998633321 2110 012589999999999999
Q ss_pred EEEEec
Q 016366 320 VIVMNS 325 (390)
Q Consensus 320 lli~e~ 325 (390)
+.++-+
T Consensus 391 ~aiVlP 396 (544)
T 3khk_A 391 MALLLA 396 (544)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 888643
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00085 Score=59.73 Aligned_cols=111 Identities=16% Similarity=0.124 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhh--CCCCeE--EEecchHHHhhCCCCCCc---eEEEC-CCCCCCC
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSK--YPQIKA--VNFDLPHVVQDAPSYAGV---EHVGG-NMFESVP 284 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~--~p~~~~--~~~Dl~~~~~~a~~~~rv---~~~~g-d~~~~~p 284 (390)
+.+.+|-+.. -+++..+|||+||+.|..+.-.+++ -..+.+ ++.|+ .........+++ .+.++ |+++.-+
T Consensus 60 yKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~~~ 137 (269)
T 2px2_A 60 AKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYKPS 137 (269)
T ss_dssp HHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGSCC
T ss_pred HHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCCCC
Confidence 4455677665 3788899999999999999998885 211122 33342 111111111455 45557 9987333
Q ss_pred C-CcEEEeccccccCC----hhH-HHHHHHHHHHhCCCCc-EEEEEecc
Q 016366 285 E-GDAILMKWILHCWD----DDH-CLRILKNCYKAVPGNG-KVIVMNSI 326 (390)
Q Consensus 285 ~-~D~i~~~~vlh~~~----d~~-~~~~L~~~~~~L~pgG-~lli~e~~ 326 (390)
. .|+|+|.-.=. -+ |+. ...+|.-+.+.|+||| .+++--+.
T Consensus 138 ~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 138 EISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp CCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 3 49998764321 11 222 2236777889999999 88874443
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00043 Score=71.48 Aligned_cols=100 Identities=10% Similarity=0.040 Sum_probs=67.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCC---CCeEEEecc-hHHHhhC--CC----------CCCceEEECCCCCCC--C-CC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYP---QIKAVNFDL-PHVVQDA--PS----------YAGVEHVGGNMFESV--P-EG 286 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p---~~~~~~~Dl-~~~~~~a--~~----------~~rv~~~~gd~~~~~--p-~~ 286 (390)
....+|+|.|||+|.++..++++.+ ..+++++|+ +.+++.| +. .+...+...|+.++. + ..
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3567999999999999999998876 356888888 6666665 21 122355666666521 2 23
Q ss_pred -cEEEecccccc-CC-hh-------------------------HHHHHHHHHHHhCCCCcEEEEEec
Q 016366 287 -DAILMKWILHC-WD-DD-------------------------HCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 287 -D~i~~~~vlh~-~~-d~-------------------------~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|+|+++=-+.. .. +. -...++.++.+.|+|||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 99998744411 11 11 123478899999999999988654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=9.1e-05 Score=86.63 Aligned_cols=141 Identities=14% Similarity=0.141 Sum_probs=63.4
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCC-----CeEEEecc-hHHHhhCCCC---CCceEEECCCCCC---CCCC-cEEEecc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQ-----IKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFES---VPEG-DAILMKW 293 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~-----~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~~---~p~~-D~i~~~~ 293 (390)
...+||+||+|+|..+..+++...+ .+++..|+ +...+.+++. -.++....|..++ .+.. |+|+..+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 4569999999999877776665432 24666676 5555555543 1122222233222 2233 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCe
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKG 373 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 373 (390)
+||.-++.. ..|+++++.|+|||++++.+...... ......+.+.. .. .++...+.++|.++|+++||+.
T Consensus 1320 vl~~t~~~~--~~l~~~~~lL~p~G~l~~~e~~~~~~-----~g~~~~~~~~~--~r-~~~~~~~~~~w~~~l~~~gf~~ 1389 (2512)
T 2vz8_A 1320 ALATLGDPA--VAVGNMAATLKEGGFLLLHTLLAGHP-----LGEMVGFLTSP--EQ-GGRHLLSQDQWESLFAGASLHL 1389 (2512)
T ss_dssp C----------------------CCEEEEEEC----------------------------------CTTTTSSTTTTEEE
T ss_pred cccccccHH--HHHHHHHHhcCCCcEEEEEecccccc-----ccccccccccc--cc-cCCcccCHHHHHHHHHhCCCce
Confidence 999765544 78999999999999999877642110 00000000000 00 0123456788999999999988
Q ss_pred eEEE
Q 016366 374 INFA 377 (390)
Q Consensus 374 ~~~~ 377 (390)
+...
T Consensus 1390 ~~~~ 1393 (2512)
T 2vz8_A 1390 VALK 1393 (2512)
T ss_dssp EEEE
T ss_pred eeec
Confidence 7653
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0052 Score=63.65 Aligned_cols=147 Identities=10% Similarity=0.102 Sum_probs=103.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCC--------CCeEEEecchHHHhhCCC------------------------------
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYP--------QIKAVNFDLPHVVQDAPS------------------------------ 268 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p--------~~~~~~~Dl~~~~~~a~~------------------------------ 268 (390)
+...|+-+|||.=.....+...+| +++++.+|+|++++.-++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 467899999999999999988755 788999999888664221
Q ss_pred CCCceEEECCCCC--CC----------CCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcc
Q 016366 269 YAGVEHVGGNMFE--SV----------PEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVS 334 (390)
Q Consensus 269 ~~rv~~~~gd~~~--~~----------p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~ 334 (390)
.++..++..|+.+ .+ ... -++++--+|.+++.+++.++|+.+.+ + |+|.+++.|.+.+..+...
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~ 264 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEP 264 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSH
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCCh
Confidence 0378899999987 21 222 67788899999999999999999985 4 6888898898876533221
Q ss_pred hHHhhhhhhhhhhhhh---c-CCCcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 335 SAARETSLLDVLLMTR---D-GGGRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 335 ~~~~~~~~~d~~~~~~---~-~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
. ...+--++... . .-...++.++..+.|.+.||+.+....+
T Consensus 265 -f---~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 265 -F---SKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp -H---HHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred -H---HHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 1 11111111100 0 0113457999999999999987665543
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00038 Score=62.97 Aligned_cols=77 Identities=9% Similarity=0.173 Sum_probs=54.3
Q ss_pred HHHHhhccCCc--ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHH-------HhhCCC-------C-CCceEEECCC
Q 016366 218 ILEHYEGFQNV--ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHV-------VQDAPS-------Y-AGVEHVGGNM 279 (390)
Q Consensus 218 l~~~~~~~~~~--~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~-------~~~a~~-------~-~rv~~~~gd~ 279 (390)
+.+.+. ..++ .+|||+|||+|..+..++++. .+++++|. +.+ ++.+++ . .+++++++|.
T Consensus 78 l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~g--~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 78 VAKAVG-IKGDYLPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp HHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 344443 4455 799999999999999999984 46888887 533 433321 1 4699999998
Q ss_pred CC---CCCCC-cEEEecccccc
Q 016366 280 FE---SVPEG-DAILMKWILHC 297 (390)
Q Consensus 280 ~~---~~p~~-D~i~~~~vlh~ 297 (390)
.+ .++.. |+|++.-.+++
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHHhCcccCCEEEEcCCCCC
Confidence 75 23334 99999876654
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0002 Score=68.99 Aligned_cols=64 Identities=22% Similarity=0.366 Sum_probs=50.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCCCCC-----CCcEEEec
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESVP-----EGDAILMK 292 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~~~p-----~~D~i~~~ 292 (390)
.+.+|||+|||+|..+..+++.. .+++++|+ +.+++.++++ ++++++++|+.+.++ ..|+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 36899999999999999998874 57888887 7888877642 469999999987322 23999884
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.002 Score=55.87 Aligned_cols=90 Identities=9% Similarity=0.085 Sum_probs=60.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC---------CCCceEEECCCCCC-------------
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFES------------- 282 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~rv~~~~gd~~~~------------- 282 (390)
.+..+||||||| ..+..+++ .++.+++.+|. ++..+.+++ .++|+++.+|..+-
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred hCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 356899999985 56666666 45778888886 555555443 34799999996431
Q ss_pred -----------CC--C-CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 283 -----------VP--E-GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 283 -----------~p--~-~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.+ . .|+|+...-. ....+..+.+.|+|||.|+ .|.+
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv-~DNv 155 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLL-FDDY 155 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEE-ETTG
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEE-EeCC
Confidence 22 2 2999877631 1244666779999999874 5553
|
| >1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00038 Score=50.59 Aligned_cols=61 Identities=10% Similarity=0.104 Sum_probs=50.0
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCC-cHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPM-MLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~-~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
.+-.|++.|...||.|+.+||+.+|+ ... .+++.|..|...|+|...+...+ .|++|+.+.
T Consensus 12 ~~~~IL~~Lk~~g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~~~gRP-~w~LT~~g~ 73 (79)
T 1xmk_A 12 IKEKICDYLFNVSDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQGTTPP-IWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEECSSSC-EEEECHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEecCCCCC-CeEeCHhHH
Confidence 45567888888899999999999999 888 99999999999999975322223 788887665
|
| >3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00028 Score=54.98 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=55.3
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHh--ccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccccCC
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQL--QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNK 116 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~--~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~~ 116 (390)
.+..|++.|.++|+.|+.+||+.+ ++ .+..+++.|+.|...|+|... ..+.|++|+.+..+....
T Consensus 14 ~d~~IL~~L~~~g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~---~rg~Y~LT~~G~~~l~~~ 80 (111)
T 3b73_A 14 WDDRILEIIHEEGNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL---ANGVYVITEEGEAYLNGE 80 (111)
T ss_dssp HHHHHHHHHHHHSCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC---STTCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec---CCceEEECchHHHHHHHH
Confidence 356788889876899999999999 99 999999999999999999863 334899999998777543
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0022 Score=58.60 Aligned_cols=95 Identities=19% Similarity=0.129 Sum_probs=66.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhC-----CCCeEEEecc-hH--------------------------HHhhCCC-----
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL-PH--------------------------VVQDAPS----- 268 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~-----p~~~~~~~Dl-~~--------------------------~~~~a~~----- 268 (390)
..+++|||+|+..|..+..+++.. ++.+++++|. +. .++.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 456899999999999988887654 4778888883 11 1122222
Q ss_pred ---CCCceEEECCCCCC---CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 269 ---YAGVEHVGGNMFES---VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 269 ---~~rv~~~~gd~~~~---~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.++|+++.||+.+- ++.. |+|++..-. -+.....|..++..|+|||.+++-|
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~----y~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL----YESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS----HHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc----cccHHHHHHHHHhhcCCCEEEEEcC
Confidence 16899999999763 3322 888776532 1334578999999999999766533
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00072 Score=61.40 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=52.4
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--CCceEEECCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE 281 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--~rv~~~~gd~~~ 281 (390)
..++++.+. ..+...+||.+||.|..+..++++ +.+++++|. |.+++.+++. +|++++++||.+
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 456777776 677789999999999999999998 678999998 7777666532 589999999865
|
| >3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0018 Score=49.43 Aligned_cols=59 Identities=20% Similarity=0.297 Sum_probs=45.0
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
-.++.|+..|.. |+.|+.|||+.+|+ .+..+.+.|+.|...|+|..........|++++
T Consensus 23 ~~r~~Il~~L~~-~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (102)
T 3pqk_A 23 PVRLMLVCTLVE-GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRRNIKQIFYRLTE 81 (102)
T ss_dssp HHHHHHHHHHHT-CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEECSSSCCEEEECS
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECc
Confidence 344556666755 69999999999999 999999999999999999864222223466665
|
| >2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00071 Score=47.64 Aligned_cols=54 Identities=9% Similarity=0.269 Sum_probs=44.8
Q ss_pred HhChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecC
Q 016366 46 QLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (390)
Q Consensus 46 ~lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t 106 (390)
+..|++.|..+ +++|..|||+.+|+ +...+.+.|..|...|+|.. ...+.|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~---~~~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSS---PSPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEE---EETTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEec---CCCceEeeC
Confidence 55688888765 38999999999999 99999999999999999875 244677754
|
| >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0012 Score=49.95 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=50.1
Q ss_pred HHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
++..-.++.|++.| . |+.|+.|||+.+++ .+..+.+.|+.|...|+|.+. . +.|++++.+.
T Consensus 27 ~l~~~~r~~Il~~L-~-~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~---~-g~y~l~~~g~ 87 (96)
T 1y0u_A 27 AVTNPVRRKILRML-D-KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV---G-ERWVVTDAGK 87 (96)
T ss_dssp HHSCHHHHHHHHHH-H-TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---T-TEEEECTTTC
T ss_pred HhCCHHHHHHHHHH-c-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE---C-CEEEECCCch
Confidence 34444566788888 5 69999999999999 999999999999999999873 3 5888887654
|
| >3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0013 Score=49.77 Aligned_cols=60 Identities=12% Similarity=0.157 Sum_probs=46.4
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
-.++.|+..|..+++.|..|||+.+|+ ++..+.+.|+.|...|+|..........|++++
T Consensus 24 ~~~~~il~~l~~~~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~ 83 (99)
T 3cuo_A 24 PKRLLILCMLSGSPGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQRDAQRILYSIKN 83 (99)
T ss_dssp HHHHHHHHHHTTCCSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSCEEEEECC
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEECh
Confidence 445667777876569999999999999 999999999999999999864221122355554
|
| >1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0017 Score=51.52 Aligned_cols=64 Identities=22% Similarity=0.211 Sum_probs=48.1
Q ss_pred HHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
++..-.++.|+..|...|+.|+.+||+.+|+ .+..+.+.|+.|...|++..........|++++
T Consensus 38 al~~~~rl~IL~~L~~~~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~ 101 (122)
T 1u2w_A 38 AIADENRAKITYALCQDEELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKEGKLALYSLGD 101 (122)
T ss_dssp HHHSHHHHHHHHHHHHSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----CCEEEESC
T ss_pred HhCCHHHHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEECCEEEEEECH
Confidence 3444456778888875579999999999999 999999999999999999863211112466664
|
| >3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0013 Score=49.92 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=46.6
Q ss_pred HHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
.-.++.|+..|.+ |+.|+.|||+.+|+ .+..+.+.|+.|...|+|..........|++++
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKS 81 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCTTCCEEEECC
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECH
Confidence 3445667778877 79999999999999 999999999999999999864222223466654
|
| >1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0015 Score=47.28 Aligned_cols=58 Identities=16% Similarity=0.307 Sum_probs=47.6
Q ss_pred HHhChhHHHhhcC---CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 45 IQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 45 ~~lglfd~L~~~g---~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
.+..|++.|..++ ++|+.|||+++|+ +...+.+.|+-|...|+|...+ ..++.|..++
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~g-~~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA-GTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEEC-SSSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCCceEecC
Confidence 3566888888877 8999999999999 8999999999999999998643 2346676654
|
| >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0059 Score=49.30 Aligned_cols=67 Identities=12% Similarity=0.180 Sum_probs=47.8
Q ss_pred HHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
...++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 36 t~~~~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 36 TPPDVHVLKLIDEQRGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHH
Confidence 3566778888888789999999999999 999999999999999999874332222 266777666554
|
| >2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0027 Score=46.31 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=39.2
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
..|++.|...|++|..|||+.+|+ .+..+.+.|+.|...|+|..
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 346777776679999999999999 99999999999999999984
|
| >1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0028 Score=46.30 Aligned_cols=63 Identities=14% Similarity=0.300 Sum_probs=47.6
Q ss_pred HHhChhHHHhhcC---CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccccc
Q 016366 45 IQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYF 112 (390)
Q Consensus 45 ~~lglfd~L~~~g---~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l 112 (390)
.+..|++.|.+++ ++|+.+||+++|+ ....+.+.|.-|...|+|...+ ...+.|...+....+
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~g-~~~~~W~i~~~~~~~ 76 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA-GTPPLWKIAVSTQAW 76 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEES-SSSCEEEEC------
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCCeeEEeCcHHhc
Confidence 4556788888776 7999999999999 8999999999999999998643 244678777655433
|
| >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0014 Score=49.54 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=52.2
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccC---CCcceecCcccc
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSK 110 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~---~~~~y~~t~~s~ 110 (390)
.++..-.++.|+..|..+++.|..+||+.+++ ++..+.+.|+.|...|+|...... ....|++|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPRRKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHH
Confidence 45556667888888865569999999999999 999999999999999999853211 112477776554
|
| >3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0018 Score=50.98 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=50.7
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcc
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~ 108 (390)
.+|.--.++.|+..|.. |+.|+.|||+.+|+ .+..+.+.|+.|...|+|..........|++++.
T Consensus 13 ~al~~~~R~~Il~~L~~-~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~ 77 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR-GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKE 77 (118)
T ss_dssp HHHTSHHHHHHHHHHHT-CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSH
T ss_pred HHhCCHHHHHHHHHHHh-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHH
Confidence 34555567778888875 79999999999999 9999999999999999998642222235777763
|
| >2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0054 Score=47.31 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=54.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccCCC---
Q 016366 25 YSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE--- 100 (390)
Q Consensus 25 ~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~--- 100 (390)
...++++..+.|...+|. .|.. |+.+..||++.+ ++ ++..+.+.|+.|...|+|.+.....+
T Consensus 4 ~~~~l~~l~~~~~~~IL~---------~L~~-~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~~~d~r~ 69 (107)
T 2hzt_A 4 VEATLEVIGGKWKXVILX---------HLTH-GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPK 69 (107)
T ss_dssp HHHHHHHHCSTTHHHHHH---------HHTT-CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCE
T ss_pred HHHHHHHHcCccHHHHHH---------HHHh-CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecCCCCCe
Confidence 345566666666655443 3443 689999999999 99 99999999999999999987533222
Q ss_pred cceecCccccccc
Q 016366 101 RLYALNPVSKYFV 113 (390)
Q Consensus 101 ~~y~~t~~s~~l~ 113 (390)
-.|++|+.+..+.
T Consensus 70 ~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 70 VEYELSEYGRSLE 82 (107)
T ss_dssp EEEEECTTGGGGH
T ss_pred EEEEECccHHHHH
Confidence 2488888766544
|
| >1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0022 Score=48.58 Aligned_cols=64 Identities=13% Similarity=0.201 Sum_probs=50.4
Q ss_pred HhChhHHHhhcCCCCHHHH----HHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 46 QLGVFEIIAKAGELSAPEI----AAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eL----a~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
++.++..|..+|+.|..+| |+.+++ ++..+.++++.|+..|++.+........|.+|+.+..+.
T Consensus 10 q~~iL~~l~~~~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 10 EAIVLAYLYDNEGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHHTTCTTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHH
Confidence 4456777776679999999 899999 999999999999999999874322334577787776555
|
| >2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0027 Score=49.35 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=45.7
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
.++.|+..|.. |+.|+.+||+.+|+ ++..+.+.|+.|...|+|..........|++++.+
T Consensus 22 ~r~~IL~~L~~-~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~ 81 (114)
T 2oqg_A 22 TRWEILTELGR-ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESVKVGREIRYRALGAE 81 (114)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHH
Confidence 45567777744 69999999999999 99999999999999999986321112237766644
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.01 Score=55.14 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=54.3
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCC--CCCceEEECCCCC
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS--YAGVEHVGGNMFE 281 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~--~~rv~~~~gd~~~ 281 (390)
+..++++.+. ..++..++|..||.|..+..++++. |+.+++++|. |.+++.+++ .+|++++.+++.+
T Consensus 45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 3457777776 6778899999999999999999985 7889999998 788887753 2578888887754
|
| >1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0038 Score=48.03 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=39.5
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.++.|+..|.. |+.|+.|||+.+|+ ++..+.+.|+.|...|+|...
T Consensus 27 ~r~~IL~~L~~-~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 27 NRIRIMELLSV-SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 44556666764 68999999999999 999999999999999999864
|
| >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0064 Score=50.39 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=52.5
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+|++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 46 ~~q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 46 LPQFTALSVLAAKPNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence 345567888887789999999999999 999999999999999999875433333 267777776555
|
| >2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.01 Score=45.84 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC
Q 016366 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (390)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~ 100 (390)
..+....+++....... +.|+..|.. |+.|+.|||+.+|+ ++..+.+.|+.|...|+|........
T Consensus 11 ~~~~~~~~~~al~~~~r---------~~IL~~L~~-~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~~gr~ 76 (108)
T 2kko_A 11 LLDQVARVGKALANGRR---------LQILDLLAQ-GERAVEAIATATGM----NLTTASANLQALKSGGLVEARREGTR 76 (108)
T ss_dssp HHHHHHHHHHHHTTSTT---------HHHHHHHTT-CCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEEETTE
T ss_pred hHHHHHHHHHHhCCHHH---------HHHHHHHHc-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCE
Confidence 33444455554444443 445556665 69999999999999 99999999999999999986421111
Q ss_pred cceecCc
Q 016366 101 RLYALNP 107 (390)
Q Consensus 101 ~~y~~t~ 107 (390)
..|++++
T Consensus 77 ~~y~l~~ 83 (108)
T 2kko_A 77 QYYRIAG 83 (108)
T ss_dssp EEEEESC
T ss_pred EEEEECh
Confidence 2355554
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0071 Score=57.23 Aligned_cols=103 Identities=13% Similarity=0.058 Sum_probs=68.9
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------------CCCceEEECCCCC-C--CCCC-c
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------YAGVEHVGGNMFE-S--VPEG-D 287 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------------~~rv~~~~gd~~~-~--~p~~-D 287 (390)
..++.+|||+.+|.|.=+.++++..++..++..|+ +.-++..++ ..++.+...|... + .+.. |
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56778999999999999999998877667888886 333222211 1468888888765 2 2233 8
Q ss_pred EEEec----c----cc-------ccCChhH-------HHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 288 AILMK----W----IL-------HCWDDDH-------CLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 288 ~i~~~----~----vl-------h~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
.|++. . ++ ..+...+ -.++|.++.+.|||||+|+-++=.+
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 88752 1 11 1122222 2478999999999999987655433
|
| >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0058 Score=49.52 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=52.1
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+|++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 31 ~~q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 31 YNLFAVLYTLATEGSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 346677788877679999999999999 999999999999999999874332232 367777776554
|
| >3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.026 Score=45.92 Aligned_cols=63 Identities=14% Similarity=0.248 Sum_probs=46.2
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecc--cCCCcc---eecCccccccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV--SGGERL---YALNPVSKYFV 113 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~--~~~~~~---y~~t~~s~~l~ 113 (390)
++.++..| ..+++|..+||+.+++ ++..+.+.++.|+..|+|.+.. ...+++ +.+|+.+..+.
T Consensus 40 q~~iL~~l-~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 40 QSHVLNML-SIEALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHHH-HcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 44478888 6679999999999999 9999999999999999998621 222332 56666665544
|
| >1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0052 Score=44.48 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=39.3
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
|.+.|.++|.++++|||+.+++ .+..++|-|+.|...|++.+
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R 48 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVR 48 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 6678888889999999999999 99999999999999999986
|
| >2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0053 Score=45.36 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=39.6
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
|.+.|...|.+|+.|||+.+++ .+..++|.|+.|...|+|.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 6778888889999999999999 999999999999999999863
|
| >3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0068 Score=49.23 Aligned_cols=66 Identities=12% Similarity=0.208 Sum_probs=49.9
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC---cceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~---~~y~~t~~s~~l~ 113 (390)
..++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ ..+.+|+.+..+.
T Consensus 40 ~~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 40 MTEWRIISVLSSASDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHHHSSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence 456677888887789999999999999 99999999999999999986432222 2366677665544
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.025 Score=51.97 Aligned_cols=123 Identities=18% Similarity=0.235 Sum_probs=72.2
Q ss_pred CCcceEEEEcCCccHHHHH----HHhhCCCCe--EEEecc---------hH----HH----hhCCC--CCC--ceEEECC
Q 016366 226 QNVERLVDVGGGFGVTLSM----ITSKYPQIK--AVNFDL---------PH----VV----QDAPS--YAG--VEHVGGN 278 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~----l~~~~p~~~--~~~~Dl---------~~----~~----~~a~~--~~r--v~~~~gd 278 (390)
...-+|||+|-|+|..... +.+..|+.+ ++.++. +. .. +.... ..+ +++..||
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 3456899999999975543 234567755 455552 00 00 00000 133 3567788
Q ss_pred CCCC---CCC--CcEEEecccc-ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcC
Q 016366 279 MFES---VPE--GDAILMKWIL-HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDG 352 (390)
Q Consensus 279 ~~~~---~p~--~D~i~~~~vl-h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 352 (390)
+.+. ++. .|++++...= .--|+-.-..+++++++.++|||.+.- .+
T Consensus 175 a~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT--Yt-------------------------- 226 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS--YS-------------------------- 226 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE--SC--------------------------
T ss_pred HHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE--Ee--------------------------
Confidence 8652 333 2888775311 111233345899999999999998652 11
Q ss_pred CCcccCHHHHHHHHHHCCCCeeEEEecCC
Q 016366 353 GGRERTKKEYTELAIAAGFKGINFASCVC 381 (390)
Q Consensus 353 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~ 381 (390)
....+++-|.++||++.++-..++
T Consensus 227 -----aag~VRR~L~~aGF~V~k~~G~g~ 250 (308)
T 3vyw_A 227 -----SSLSVRKSLLTLGFKVGSSREIGR 250 (308)
T ss_dssp -----CCHHHHHHHHHTTCEEEEEECC--
T ss_pred -----CcHHHHHHHHHCCCEEEecCCCCC
Confidence 123457889999999877765543
|
| >3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0064 Score=55.41 Aligned_cols=57 Identities=18% Similarity=0.309 Sum_probs=45.9
Q ss_pred hChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 47 lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+.|++.|...+ ++|+.|||+++|+ +...+.|+|..|+..|+|.++ .+++|++++...
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~---~~~~Y~LG~~~~ 90 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS---ADGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC---TTSEEEECTHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC---CCCcEEehHHHH
Confidence 45778887653 7999999999999 999999999999999999973 346899987543
|
| >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.028 Score=45.82 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=50.3
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee--cccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC--SVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~--~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|..++++|..+||+.+++ ++..+.++++.|+..|+|.+ .....++ .+.+|+.+..+.
T Consensus 42 ~~~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 42 QQLAMINVIYSTPGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence 45667778877779999999999999 99999999999999999987 4322233 366777666544
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.017 Score=54.52 Aligned_cols=67 Identities=9% Similarity=0.211 Sum_probs=45.8
Q ss_pred HHHHHHHHhhccC------CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCC---CCCCceEEECCCCC
Q 016366 214 AMERILEHYEGFQ------NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP---SYAGVEHVGGNMFE 281 (390)
Q Consensus 214 ~~~~l~~~~~~~~------~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~---~~~rv~~~~gd~~~ 281 (390)
++..|++... .. ....|||||.|.|.++..|+++...-+++++++ +..++..+ ..++++++.+|+++
T Consensus 40 i~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 40 VYNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp HHHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred HHHHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 3455666554 33 347899999999999999998743234555554 44433332 35789999999975
|
| >3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0042 Score=51.23 Aligned_cols=68 Identities=19% Similarity=0.323 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 37 ~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
...+|.--.++.|+..|.. |+.|+.+||+.+|+ .+..+.+.|+.|...|+|..........|++++.+
T Consensus 51 ~l~aL~~p~R~~IL~~L~~-~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~ 118 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS-GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQG 118 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG-CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHH
T ss_pred HHHHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHH
Confidence 3556667788889999985 79999999999999 99999999999999999986422222357777644
|
| >3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.005 Score=47.89 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCC--HHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccCCC
Q 016366 24 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELS--APEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (390)
Q Consensus 24 ~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t--~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~ 100 (390)
....++++..+.|...+|. .|.. |+.+ +.||++.+ |+ .+..+.+.|+.|...|+|.+... ..
T Consensus 16 ~~~~~l~~l~~~wrl~IL~---------~L~~-g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~-r~ 80 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLIIS---------VLGN-GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSG-QI 80 (111)
T ss_dssp TTSSTHHHHHSTTHHHHHH---------HHTS-SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEES-SS
T ss_pred HHHHHHHHHcCccHHHHHH---------HHhc-CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeec-Cc
Confidence 4455666777777655554 4453 6777 99999999 99 99999999999999999987432 24
Q ss_pred cceecCccccccc
Q 016366 101 RLYALNPVSKYFV 113 (390)
Q Consensus 101 ~~y~~t~~s~~l~ 113 (390)
..|++|+.+..+.
T Consensus 81 ~~y~LT~~G~~l~ 93 (111)
T 3df8_A 81 TTYALTEKGMNVR 93 (111)
T ss_dssp EEEEECHHHHHHH
T ss_pred EEEEECccHHHHH
Confidence 4689998877655
|
| >1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0068 Score=48.00 Aligned_cols=58 Identities=21% Similarity=0.359 Sum_probs=44.6
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
.++.|+..|.+ |+.++.+||+.+|+ .+..+.+.|+.|...|++........-.|++++
T Consensus 47 ~rl~IL~~L~~-~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~ 104 (122)
T 1r1t_A 47 NRLRLLSLLAR-SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQD 104 (122)
T ss_dssp HHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESS
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECh
Confidence 45667777775 68999999999999 999999999999999999864211112355554
|
| >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0078 Score=48.16 Aligned_cols=66 Identities=17% Similarity=0.307 Sum_probs=50.7
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 33 ~~~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 33 YVQFGVIQVLAKSGKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence 345667778877679999999999999 999999999999999999874322222 266677665544
|
| >3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.014 Score=46.75 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=52.2
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|..++++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .|.+|+.+..+.
T Consensus 32 ~~~~iL~~l~~~~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKDAPLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 45567888877679999999999999 999999999999999999875332222 377888777666
|
| >4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.013 Score=47.05 Aligned_cols=79 Identities=15% Similarity=0.097 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccCC
Q 016366 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (390)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~ 99 (390)
..+.....+++..+-|...+|... .. |+.+..||++.+ ++ .+..|.+.|+.|+..|+|.+.....
T Consensus 12 ~~Cpi~~~l~~lg~kW~l~IL~~L---------~~-g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~~~ 77 (131)
T 4a5n_A 12 EGSPVEFTLDVIGGKWKGILFYHM---------ID-GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVYHQ 77 (131)
T ss_dssp -CCHHHHHHHHHCSSSHHHHHHHH---------TT-SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECS
T ss_pred CCCcHHHHHHHHcCcCHHHHHHHH---------hc-CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEecCC
Confidence 347888899999999988776542 33 699999999999 99 9999999999999999998753322
Q ss_pred C---cceecCccccccc
Q 016366 100 E---RLYALNPVSKYFV 113 (390)
Q Consensus 100 ~---~~y~~t~~s~~l~ 113 (390)
+ -.|++|+.+..+.
T Consensus 78 d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 78 VPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp SSCEEEEEECTTGGGGH
T ss_pred CCCeEEEEECHhHHHHH
Confidence 1 2489999888766
|
| >3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0046 Score=50.01 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=50.5
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+|++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 37 PEQWSVLEGIEANEPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence 455667777876679999999999999 999999999999999999874322232 366777666555
|
| >2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.029 Score=46.70 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=51.4
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
..++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+++ +.+|+.+..+.
T Consensus 45 ~~~~~iL~~L~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 45 IPQFRTLVILSNHGPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 345667888877679999999999999 9999999999999999998743322222 66777665544
|
| >2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.013 Score=45.06 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccCCC
Q 016366 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (390)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~ 100 (390)
.+....++++..+.|...+|. .|.. |+.+..||++.+ |+ ++..+.+.|+.|...|+|.+.....+
T Consensus 12 ~c~~~~~l~~l~~~~~~~IL~---------~L~~-~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~~~d 77 (107)
T 2fsw_A 12 ECPVRKSMQIFAGKWTLLIIF---------QINR-RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPEV 77 (107)
T ss_dssp TCHHHHHHHHHTSSSHHHHHH---------HHTT-SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECSS
T ss_pred CCCHHHHHHHHcCccHHHHHH---------HHHh-CCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeecCCC
Confidence 466777888888887765554 3443 589999999999 49 99999999999999999987533222
Q ss_pred ---cceecCccccccc
Q 016366 101 ---RLYALNPVSKYFV 113 (390)
Q Consensus 101 ---~~y~~t~~s~~l~ 113 (390)
-.|++|+.+..+.
T Consensus 78 ~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 78 PPRVEYSLTPLGEKVL 93 (107)
T ss_dssp SCEEEEEECHHHHTTH
T ss_pred CCeeEEEECccHHHHH
Confidence 2488998876544
|
| >1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0079 Score=48.70 Aligned_cols=54 Identities=22% Similarity=0.221 Sum_probs=44.8
Q ss_pred HhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 53 IAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 53 L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
+...+++|..+||+.+++ ++..+.+.++.|...|+|.+. ....|.+|+.+..+.
T Consensus 17 ~~~~~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 17 IEEKGYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE---KYRGLVLTSKGKKIG 70 (142)
T ss_dssp HHHHSSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHH
T ss_pred HhhcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---eCceEEEchhHHHHH
Confidence 334468999999999999 999999999999999999863 346788888776554
|
| >2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0071 Score=53.96 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=48.9
Q ss_pred hChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 47 lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
+.|++.|...+ ++|+.|||+++|+ ++..+.|+|+.|+..|+|.++ .++++|++++....+.
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~--~~~~~Y~lg~~~~~lg 70 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEAL--GPAGGFRLGPALGQLI 70 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEEC--GGGCEEEECSHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe--CCCCeEEECHHHHHHH
Confidence 45677776653 7999999999999 999999999999999999873 2347899987554433
|
| >2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0073 Score=53.97 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=52.8
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~ 114 (390)
.++.++..|..++++|..|||+++|+ ++..+.|.|+.|...|++.+. .....|++|+.+..+..
T Consensus 153 ~~~~IL~~L~~~~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~l~~ 216 (244)
T 2wte_A 153 EEMKLLNVLYETKGTGITELAKMLDK----SEKTLINKIAELKKFGILTQK--GKDRKVELNELGLNVIK 216 (244)
T ss_dssp HHHHHHHHHHHHTCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHHHHH
Confidence 35566777765579999999999999 999999999999999999864 34567999998876643
|
| >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.008 Score=48.11 Aligned_cols=65 Identities=22% Similarity=0.146 Sum_probs=50.4
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
.++.++..|..+++.|..+||+.+++ ++..+.+.++.|...|+|.+.....+++ +.+|+.+..+.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 35 AQFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHH
Confidence 35556777776679999999999999 9999999999999999998743322332 66777666554
|
| >1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0078 Score=46.80 Aligned_cols=78 Identities=15% Similarity=0.101 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccCCC
Q 016366 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (390)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~ 100 (390)
.+....++++..+.|...+|. .|.. |+.+..+||+.+ ++ ++..+.+.|+.|...|+|.+.....+
T Consensus 9 ~c~~~~~l~~l~~~~~~~IL~---------~L~~-~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~~~d 74 (112)
T 1z7u_A 9 QTSINLALSTINGKWKLSLMD---------ELFQ-GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNEL 74 (112)
T ss_dssp HHHHHHHHHTTCSTTHHHHHH---------HHHH-SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECCS
T ss_pred CCCHHHHHHHHcCccHHHHHH---------HHHh-CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeecCCC
Confidence 466677777777777665544 3444 589999999999 99 99999999999999999987533222
Q ss_pred c---ceecCccccccc
Q 016366 101 R---LYALNPVSKYFV 113 (390)
Q Consensus 101 ~---~y~~t~~s~~l~ 113 (390)
. .|++|+.+..+.
T Consensus 75 ~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 75 PPRVEYTLTPEGYALY 90 (112)
T ss_dssp SCEEEEEECHHHHHHH
T ss_pred CCeEEEEECHhHHHHH
Confidence 2 388888776544
|
| >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0083 Score=47.97 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=49.7
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
.++.++..|..+++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+++ +.+|+.+..+.
T Consensus 30 ~~~~iL~~l~~~~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 30 AQVACLLRIHREPGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHHSTTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHH
Confidence 45556777777679999999999999 9999999999999999998743222222 56666665444
|
| >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0042 Score=50.14 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=49.4
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|..+|++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+++|+.+..+.
T Consensus 37 ~q~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 37 TGYIVLMAIENDEKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHHSCTTCEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence 44556677766679999999999999 999999999999999999875332232 367777776555
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.014 Score=52.82 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=60.0
Q ss_pred CCcceEEEEcC------CccHHHHHHHhhCCC-CeEEEecchHHHhhCCCCCCceEEECCCCC-CCCCC-cEEEecc---
Q 016366 226 QNVERLVDVGG------GFGVTLSMITSKYPQ-IKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPEG-DAILMKW--- 293 (390)
Q Consensus 226 ~~~~~iLDiG~------G~G~~~~~l~~~~p~-~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~-~~p~~-D~i~~~~--- 293 (390)
+.+.+|||+|+ -.|.. .+.+..|. ..++.+|+.++...+. .+++||..+ ..... |+|++..
T Consensus 108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~-----~~IqGD~~~~~~~~k~DLVISDMAPN 180 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDAD-----STLIGDCATVHTANKWDLIISDMYDP 180 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSS-----EEEESCGGGEEESSCEEEEEECCCCT
T ss_pred cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCC-----eEEEccccccccCCCCCEEEecCCCC
Confidence 46789999996 67773 33345776 6899999855543222 458999765 23233 8886642
Q ss_pred ccccC------ChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 294 ILHCW------DDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 294 vlh~~------~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.-.+. ...-+..+|.=+.+.|+|||.+++-
T Consensus 181 tTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 181 RTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp TSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence 11111 1224667888899999999999874
|
| >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0075 Score=48.33 Aligned_cols=66 Identities=11% Similarity=0.181 Sum_probs=51.1
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 38 ~~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 38 PTQWAALVRLGETGPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHHHHSSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence 346678888876679999999999999 999999999999999999874322222 266777665444
|
| >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.037 Score=45.08 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=48.8
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
++.++..|..++++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 39 ~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 39 QLFVLASLKKHGSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence 4557777776679999999999999 999999999999999999874322222 256666655444
|
| >1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0097 Score=43.27 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=46.2
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~ 108 (390)
.....|.+.|..+| .|+.|||+++|+ ....+++.|..|...|+|.... ..+-.|+++..
T Consensus 17 ~~~~~IL~lL~~~g-~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~-~~PP~W~~~~~ 75 (82)
T 1oyi_A 17 EIVCEAIKTIGIEG-ATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSD-DIPPRWFMTTE 75 (82)
T ss_dssp HHHHHHHHHHSSST-EEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECS-SSSCEEESCC-
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC-CCCCcceeccC
Confidence 44566778888764 999999999999 9999999999999999998632 23345666653
|
| >2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0099 Score=42.86 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=37.1
Q ss_pred hhHHHhhc------CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 49 VFEIIAKA------GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 49 lfd~L~~~------g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
|++.|... +|.|+.|||+.+|+ .+..+++-|..|...|+|.+.
T Consensus 9 IL~~I~~~i~~~~g~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 9 IISIVQERQNMDDGAPVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 45555554 69999999999999 888999999999999999863
|
| >2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0082 Score=45.57 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=43.7
Q ss_pred HHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
.-.++.|+..|...|+.|+.|||+++|+ .+..+.+.|+.|... ++.....+....|++++
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~ 85 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINN 85 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEEEETTEEEEECCC
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhheEeCcEEEEEECh
Confidence 3455566644443469999999999999 999999999999999 99753222222466654
|
| >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0094 Score=48.45 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=49.6
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+++|+.+..+.
T Consensus 43 ~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 43 PQFVALQWLLEEGDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence 35567778877679999999999999 999999999999999999874322222 266677665544
|
| >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.03 Score=45.09 Aligned_cols=65 Identities=9% Similarity=0.052 Sum_probs=50.1
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|. .+++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~-~~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 37 YLDFLVLRATS-DGPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHHT-TSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHh-cCCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 34666777887 679999999999999 999999999999999999874332222 256676665444
|
| >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.012 Score=47.59 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=50.7
Q ss_pred HHHHhChhHHHhh-cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 43 AAIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 43 ~a~~lglfd~L~~-~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
...++.++..|.. +|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 34 ~~~~~~iL~~l~~~~~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 34 QFSQLVVLGAIDRLGGDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHHHHTTSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence 3456778888887 679999999999999 999999999999999999874322222 266777665444
|
| >3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.012 Score=47.62 Aligned_cols=65 Identities=18% Similarity=0.364 Sum_probs=48.1
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.|+..|..+| +|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 38 ~~~~~iL~~l~~~~-~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 38 NTQEHILMLLSEES-LTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence 45667788888765 999999999999 999999999999999999874322222 366676665444
|
| >3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.023 Score=45.74 Aligned_cols=65 Identities=8% Similarity=0.167 Sum_probs=51.3
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+++ |..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+++|+.+..+.
T Consensus 37 ~~~~~iL~~l~~~~~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 37 YLDFSILKATSEEPR-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHHSCE-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHH
Confidence 345678888887666 99999999999 999999999999999999875332222 377788776555
|
| >1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.013 Score=52.45 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=46.9
Q ss_pred hChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 47 lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
+.|++.|...+ ++|+.|||+++|+ +...+.|+|+.|+..|+|... .++.|++++..
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~---~~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK---KDKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECTHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC---CCCcEEECHHH
Confidence 45677777654 7999999999999 999999999999999999862 35789988754
|
| >4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0062 Score=49.72 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=49.3
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+|++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 41 ~~q~~iL~~l~~~~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 41 YSQYLVMLTLWEENPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 456677788877789999999999999 999999999999999999874332233 266677666544
|
| >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.013 Score=47.23 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=48.4
Q ss_pred HHhChhHHH-hhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEII-AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L-~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..| ...+++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 38 ~~~~iL~~l~~~~~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 38 ARWLVLLHLARHRDSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 106 (146)
T ss_dssp THHHHHHHHHHCSSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence 345577777 55579999999999999 999999999999999999874322222 255666555443
|
| >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.013 Score=47.24 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=50.8
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 37 YPQFLVLTILWDESPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHHHSSEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence 345667778877678999999999999 999999999999999999874332222 356676665444
|
| >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0093 Score=47.83 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=49.8
Q ss_pred HHhChhHHHhhcC--CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g--~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|..+| ++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHH
Confidence 4556777777665 9999999999999 999999999999999999875332333 256677666555
|
| >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0096 Score=48.78 Aligned_cols=65 Identities=6% Similarity=0.093 Sum_probs=49.1
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 44 ~~~~iL~~l~~~~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 44 PEWRVLACLVDNDAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHHSSCSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence 45567777877679999999999999 999999999999999999864222222 366777666554
|
| >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.01 Score=47.80 Aligned_cols=64 Identities=9% Similarity=0.045 Sum_probs=49.4
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
++.++..|..++++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+++ +.+|+.+..+.
T Consensus 31 ~~~iL~~l~~~~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 31 QYLYLVRVCENPGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHCcCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence 4456777777678999999999999 9999999999999999998753322222 66677665444
|
| >3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0081 Score=49.55 Aligned_cols=63 Identities=11% Similarity=0.079 Sum_probs=48.3
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
+.++..|..++++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 53 ~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYREDGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHH
Confidence 445677766679999999999999 999999999999999999875332233 366777666554
|
| >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.011 Score=48.21 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=50.0
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 41 ~~~~iL~~l~~~~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 41 GQRAILEGLSLTPGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 35567778877679999999999999 999999999999999999874322222 356666655444
|
| >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0099 Score=47.95 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=50.9
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 33 ~~~~~iL~~l~~~~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 33 PAQFDILQKIYFEGPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence 345667777776679999999999999 999999999999999999874322222 366777666544
|
| >2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.013 Score=42.79 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=40.5
Q ss_pred HHhChhHHHhhc--CCCCHHHHHHHh-----ccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKA--GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~eLa~~~-----~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.+..|++.|... +++|++||++.+ ++ +..-+.|.|+.|+..|+|.+.
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEE
Confidence 345688888754 589999999999 88 899999999999999999864
|
| >1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.012 Score=47.21 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccCCC
Q 016366 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (390)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~ 100 (390)
.+....++++..+.|...+|. .|.. |+.+..||++.+ |+ ++..+.+.|+.|+..|+|.+.....+
T Consensus 22 ~c~~~~~l~~l~~~w~l~IL~---------~L~~-g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~~~d 87 (131)
T 1yyv_A 22 QCPSREVLKHVTSRWGVLILV---------ALRD-GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSYPVV 87 (131)
T ss_dssp TCTHHHHHHHHHSHHHHHHHH---------HGGG-CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECSS
T ss_pred CCCHHHHHHHHcCCcHHHHHH---------HHHc-CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEecCCC
Confidence 456677777777777654443 3443 699999999999 79 99999999999999999987533222
Q ss_pred c---ceecCccccccc
Q 016366 101 R---LYALNPVSKYFV 113 (390)
Q Consensus 101 ~---~y~~t~~s~~l~ 113 (390)
. .|++|+.+..+.
T Consensus 88 ~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 88 PPHVEYSLTPLGEQVS 103 (131)
T ss_dssp SCEEEEEECHHHHHHH
T ss_pred CCeEEEEECccHHHHH
Confidence 2 488998776554
|
| >2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.013 Score=48.03 Aligned_cols=66 Identities=18% Similarity=0.144 Sum_probs=50.9
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..++++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 44 ~~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 44 TTELYAFLYVALFGPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence 446677888877679999999999999 999999999999999999874322222 266676665544
|
| >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.012 Score=48.55 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=48.5
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC---cceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~---~~y~~t~~s~~l~ 113 (390)
.++.++..|..++++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ ..+.+|+.+..+.
T Consensus 50 ~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 50 PEWRVITILALYPGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence 45567888877679999999999999 99999999999999999986422112 2366666665444
|
| >3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.01 Score=48.26 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=42.0
Q ss_pred HHhChhHHHhhc--CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|..+ +++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 42 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 42 QQGRMIGYIYENQESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence 345567777765 69999999999999 999999999999999999874322232 356676666554
|
| >2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.028 Score=44.72 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
+++|.++||+++++ ++..+.++|+.|...|+|.... ...+.|.+++..
T Consensus 25 ~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~-g~~ggy~L~~~~ 72 (129)
T 2y75_A 25 GPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIR-GAYGGYVLGSEP 72 (129)
T ss_dssp CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEESSCG
T ss_pred CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecC-CCCCceEeCCCH
Confidence 48999999999999 9999999999999999998631 124678877643
|
| >3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.0069 Score=54.70 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=47.5
Q ss_pred hChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 47 lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+.|++.|... +++|+.|||+++|+ +...+.|+|..|+..|+|..+ .+.++|++++...
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~--~~~~~Y~lG~~~~ 67 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQV--EGARSYRLGPQVL 67 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEC--SSSSEEEECTTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEEcCHHHH
Confidence 3467777653 58999999999999 999999999999999999873 2347899987543
|
| >3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.017 Score=46.23 Aligned_cols=65 Identities=12% Similarity=0.233 Sum_probs=49.0
Q ss_pred HHhChhHHHhhcC--CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g--~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|...+ ++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 3455677777665 8999999999999 999999999999999999874332222 355666655444
|
| >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.031 Score=46.10 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=50.0
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|..+|++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 54 ~q~~vL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 54 PKLRLLSSLSAYGELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHH
Confidence 35557778876679999999999999 999999999999999999875332222 366777666555
|
| >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D | Back alignment and structure |
|---|
Probab=94.94 E-value=0.0075 Score=47.96 Aligned_cols=65 Identities=11% Similarity=0.152 Sum_probs=49.7
Q ss_pred HHhChhHHHhhc--CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
.++.++..|..+ +++|..+||+.+++ ++..+.++++.|+..|+|.+.....+++ +.+|+.+..+.
T Consensus 38 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 38 EEFAVLTYISENKEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHHHHTCCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 345567777665 68999999999999 9999999999999999998743333332 56677666544
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.1 Score=52.02 Aligned_cols=111 Identities=13% Similarity=0.049 Sum_probs=69.9
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-------------CCCeEEEecc-hHHHhhCCC------CCCce
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------------PQIKAVNFDL-PHVVQDAPS------YAGVE 273 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-------------p~~~~~~~Dl-~~~~~~a~~------~~rv~ 273 (390)
++.-+++.+. .....+|+|-+||+|.++....+.. ......++|+ +.+...|+- .+.-.
T Consensus 205 Vv~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~ 283 (530)
T 3ufb_A 205 VVRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPR 283 (530)
T ss_dssp HHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCE
T ss_pred HHHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccc
Confidence 3444455554 4556799999999999998766532 1245778887 666655542 23456
Q ss_pred EEECCCCC-CCC------CCcEEEecccccc---------CC-----hhHHHHHHHHHHHhCC-------CCcEEEEEec
Q 016366 274 HVGGNMFE-SVP------EGDAILMKWILHC---------WD-----DDHCLRILKNCYKAVP-------GNGKVIVMNS 325 (390)
Q Consensus 274 ~~~gd~~~-~~p------~~D~i~~~~vlh~---------~~-----d~~~~~~L~~~~~~L~-------pgG~lli~e~ 325 (390)
+..+|... +.. ..|+|+++=-+.. ++ ......++.++.+.|+ |||++.++-+
T Consensus 284 I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 284 IDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp EECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred ccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 77888775 322 1299988744421 11 1112357888888887 6999888644
|
| >1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.013 Score=44.12 Aligned_cols=56 Identities=13% Similarity=0.250 Sum_probs=47.2
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccccccc
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~ 114 (390)
|+..+.. | ++..+||..+|+ +++.+...++.|...|++.. ..+.|.+|+.+..+..
T Consensus 13 IL~~i~~-~-~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~----~~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 13 ILEACKS-G-SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQ----EGKQYMLTKKGEELLE 68 (95)
T ss_dssp HHHHHTT-C-BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEECHHHHHHHH
T ss_pred HHHHHHc-C-CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEE----ECCeeEEChhHHHHHH
Confidence 4445554 4 899999999999 99999999999999999996 3567999999987663
|
| >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.013 Score=47.93 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=50.7
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCcccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~~ 114 (390)
.++.++..|..++++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+..
T Consensus 48 ~~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 48 PQYLVMLVLWETDERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHH
Confidence 45667778877679999999999999 999999999999999999874322222 3677887776554
|
| >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.80 E-value=0.0099 Score=47.71 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=50.6
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
..++.++..|..++++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+++ +.+|+.+..+.
T Consensus 36 ~~~~~iL~~l~~~~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 36 EQQWRVIRILRQQGEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence 345667778877679999999999999 9999999999999999998743222222 66676665444
|
| >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.79 E-value=0.014 Score=48.59 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=49.1
Q ss_pred HHHhChhHHHhh-cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~-~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|.. .+++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 53 ~~q~~vL~~L~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 53 QTHWVTLHNIHQLPPDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHHHSCSSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHH
Confidence 345667777776 468999999999999 999999999999999999875332232 366777666555
|
| >3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.013 Score=48.35 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=50.5
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.|+..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 52 ~~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 52 TAKMRALAILSAKDGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 345667888887779999999999999 999999999999999999874322222 266676665444
|
| >3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.033 Score=46.21 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
+++|+++||+.+++ ++..++++|..|...|+|...+ ..+|.|.+++
T Consensus 43 ~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar 88 (159)
T 3lwf_A 43 GPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIR-GAHGGYVLNG 88 (159)
T ss_dssp CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-STTCEEEECS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEec-CCCCceEecC
Confidence 48999999999999 9999999999999999998643 2356788765
|
| >3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.072 Score=43.59 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=47.9
Q ss_pred HHhChhHHH-hhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 45 IQLGVFEII-AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L-~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
.++.++..| ...+++|..+||+.+++ ++..+.++++.|+..|+|.+.....+++ +.+|+.+..+.
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence 456678888 44569999999999999 9999999999999999998743222222 66677665544
|
| >3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.048 Score=45.35 Aligned_cols=49 Identities=27% Similarity=0.440 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+++|.++||+++++ ++..++++|..|...|+|...+ ..+|.|++.+...
T Consensus 27 ~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar~p~ 75 (162)
T 3k69_A 27 SKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGTV-GKNGGYQLDLALA 75 (162)
T ss_dssp SCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEEC-STTCEEECCSCGG
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec-CCCCCeEecCChh
Confidence 38999999999999 9999999999999999997532 2456788876443
|
| >2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.024 Score=44.30 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=40.8
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
..++.|+..|.+ ++.|+.+||+.+++ ++..+.+.|+.|...|++...
T Consensus 32 ~~~~~il~~L~~-~~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 32 PSRLMILTQLRN-GPLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HHHHHHHHHHHH-CCCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 345667777776 68999999999999 999999999999999999753
|
| >1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.013 Score=47.48 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=52.0
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCcccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~~ 114 (390)
..++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+..
T Consensus 40 ~~~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 40 YPQYLALLLLWEHETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 345667777776679999999999999 999999999999999999874322222 2677887776654
|
| >1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B | Back alignment and structure |
|---|
Probab=94.49 E-value=0.025 Score=41.05 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=40.4
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.+..|++.|...++.|+.||++.++..+.-.+..+.++|+.|+..|+|.+.
T Consensus 10 ~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 456677788766799999999999731001678899999999999999874
|
| >2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=94.38 E-value=0.015 Score=43.59 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=45.4
Q ss_pred hhHHHhhcC-CCCHHHHHHHhccCCCCCCCc-HHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 49 VFEIIAKAG-ELSAPEIAAQLQAQNVKAPMM-LDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 49 lfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~-l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
++..|..+| ++|..+||+.+++ ++.. +.+.++.|+..|+|..+ ..+. .+++|+.+..+.
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~--~~drR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEE--TLSYRVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEE--EEETTEEEEEECHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecC--CCCCCeEEEEECHhHHHHH
Confidence 455566556 8999999999999 9999 99999999999999842 2222 366777666554
|
| >2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=94.38 E-value=0.026 Score=46.07 Aligned_cols=80 Identities=16% Similarity=0.138 Sum_probs=59.2
Q ss_pred HhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCC
Q 016366 20 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (390)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~ 99 (390)
...+...+.+++....|...+|.. |.. |+.+..||++.+++ ++..+.+.|+.|+..|+|.+.....
T Consensus 9 ~~~c~~~~~l~~l~~~w~l~IL~~---------L~~-g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~~~ 74 (146)
T 2f2e_A 9 QASCPVARPLDVIGDGWSMLIVRD---------AFE-GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAES 74 (146)
T ss_dssp TCSCTTTTTHHHHCSSSHHHHHHH---------HHT-TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred CCCCcHHHHHHHhCCchHHHHHHH---------HHh-CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEecCC
Confidence 334556667777777777655543 333 58999999999999 9999999999999999998743211
Q ss_pred --CcceecCccccccc
Q 016366 100 --ERLYALNPVSKYFV 113 (390)
Q Consensus 100 --~~~y~~t~~s~~l~ 113 (390)
.-.|++|+.+..+.
T Consensus 75 d~~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 75 GSHQEYRLTDKGRALF 90 (146)
T ss_dssp SSCEEEEECHHHHTTH
T ss_pred CCeEEEEECchHHHHH
Confidence 13588888776544
|
| >3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.042 Score=44.70 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
+++|+++||+++++ ++..++++|..|...|+|...+ ..+|.|++++..
T Consensus 27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar~p 74 (143)
T 3t8r_A 27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSVR-GAKGGYQLRVPA 74 (143)
T ss_dssp CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECS-SSSSEEEESSCG
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEecC-CCCCCeeecCCc
Confidence 38999999999999 9999999999999999997532 234678877643
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.22 E-value=0.041 Score=50.56 Aligned_cols=52 Identities=23% Similarity=0.218 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS 268 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~ 268 (390)
.++..++..+. .+...|||++||+|.++.++++.. .+++++|+ +.+++.+++
T Consensus 223 ~l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~g--~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 223 ELAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARWG--RRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHH
Confidence 34455666554 456799999999999999988764 57888888 778877764
|
| >3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.021 Score=46.37 Aligned_cols=66 Identities=11% Similarity=0.147 Sum_probs=47.7
Q ss_pred HHHhChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 44 AIQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
..++.++..|..++ ++|..+||+.+++ ++..+.++++.|+..|+|.+.....+++ +.+|+.+..+.
T Consensus 39 ~~q~~vL~~l~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 39 VRSYSVLVLACEQAEGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHHHSTTCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHH
Confidence 44566777776543 7899999999999 9999999999999999998743322222 66777766555
|
| >1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.046 Score=44.71 Aligned_cols=62 Identities=11% Similarity=0.091 Sum_probs=45.2
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
.++++.+.+... .. +++|+++||+++++ ++..++++|..|...|+|...+ +.+.|.+++...
T Consensus 15 yAl~~L~~La~~---~~-~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~r--G~GGy~L~~~p~ 76 (149)
T 1ylf_A 15 IAVHILSILKNN---PS-SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR--GPGGAGLLKDLH 76 (149)
T ss_dssp HHHHHHHHHHHS---CG-GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEESSCGG
T ss_pred HHHHHHHHHHhC---CC-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEcc--CCCceEeCCChh
Confidence 455555544331 22 38999999999999 9999999999999999998642 256788876433
|
| >4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.032 Score=45.47 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=45.9
Q ss_pred hChhHHHh--hcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 47 LGVFEIIA--KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 47 lglfd~L~--~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
+.++..|. .+|++|..+||+.+++ ++..+.++++-|+..|+|.+.....+++ .++|+.+..+.
T Consensus 38 ~~vL~~L~~~~~~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 38 YEALVLLTFSKSGELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVV 105 (147)
T ss_dssp HHHHHHHHTSGGGEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHH
Confidence 33445553 2358999999999999 9999999999999999998754433333 66777776554
|
| >3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.074 Score=45.21 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=53.3
Q ss_pred HHHHhChhHHHhh--cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCcccccccc
Q 016366 43 AAIQLGVFEIIAK--AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (390)
Q Consensus 43 ~a~~lglfd~L~~--~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~~ 114 (390)
...++.++..|.. .|++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+++|+.+..+..
T Consensus 40 t~~q~~vL~~L~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 40 TSRQYMTILSILHLPEEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp CHHHHHHHHHHHHSCGGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 4566777888875 358999999999999 999999999999999999875433332 3677877765554
|
| >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.028 Score=42.69 Aligned_cols=47 Identities=15% Similarity=0.371 Sum_probs=40.6
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.++.|+..|..++++|..+||+.+++ ++..+.+.|+.|...|+|...
T Consensus 21 ~~~~il~~l~~~~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 21 SDVRIYSLLLERGGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 35556677765579999999999999 999999999999999999863
|
| >2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.017 Score=51.97 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=48.3
Q ss_pred hChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 47 lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
+.|++.|... +++|+.|||+++|+ ++..+.|+|+.|+..|+|.. +++.|++++....+.
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~----~~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAG----SGGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEECGGGHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe----CCCEEEEcHHHHHHH
Confidence 3456666543 48999999999999 99999999999999999986 358899988655444
|
| >2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.022 Score=51.31 Aligned_cols=56 Identities=16% Similarity=0.285 Sum_probs=45.2
Q ss_pred hChhHHHhh-cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 47 LGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 47 lglfd~L~~-~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
+.|++.|.. .+++|+.|||+++|+ +...+.|+|+.|+..|+|..+ .+++|++++..
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~---~~~~Y~lg~~~ 82 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSR---ADGSYSLGPEM 82 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC---CCCeEEecHHH
Confidence 345666653 358999999999999 999999999999999999863 23389998754
|
| >4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.052 Score=44.39 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=48.6
Q ss_pred HhChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 46 QLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 46 ~lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
++.++-.|... ++.+..+||+.+++ ++..+.++++.|+..|+|.+..++.+++ .++|+.+..+.
T Consensus 33 q~~vL~~L~~~~~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 33 HWVTLYNINRLPPEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHH
Confidence 34456666543 36788999999999 9999999999999999998754434433 66777776555
|
| >2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.018 Score=52.10 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=46.5
Q ss_pred hChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 47 lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+.|++.|... +++|+.|||+++|+ +...+.|+|+.|+..|+|.. ++++|++++...
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~----~~~~Y~Lg~~~~ 80 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDL----TRATARRFLLTLVELGYVAT----DGSAFWLTPRVL 80 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEE----SSSEEEECGGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe----cCCEEEEcHHHH
Confidence 3466666542 48999999999999 99999999999999999986 358899987543
|
| >3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.025 Score=47.01 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=48.0
Q ss_pred HHHhChhHHHhhc--CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~--g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+ +++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 46 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 46 AQQYNTLRLLRSVHPEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHH
Confidence 3456677777764 49999999999999 999999999999999999875433333 366777666555
|
| >2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.051 Score=44.51 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=44.5
Q ss_pred HHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 52 IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 52 ~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
.|..+|+.|..+||+.+++ ++..+.+.++.|...|+|.+. .+..+.+|+.+..+.
T Consensus 48 ~l~~~~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~---~~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 48 LIREVGEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMI---PWRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHHSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEE---TTTEEEECHHHHHHH
T ss_pred HHHhCCCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEe---cCCceEEChhHHHHH
Confidence 4544468999999999999 999999999999999999862 345677887766444
|
| >2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.04 Score=44.16 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=42.4
Q ss_pred cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 56 ~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
+++.|..+||+++++ ++..+.+.++.|...|+|.+. ...|.+|+.+..+.
T Consensus 29 ~~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~----~~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 29 GEGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK----EDGVWITNNGTRSI 78 (139)
T ss_dssp TSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----TTEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec----CCeEEEChhHHHHH
Confidence 358999999999999 999999999999999999863 26788888766443
|
| >1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A | Back alignment and structure |
|---|
Probab=93.58 E-value=0.037 Score=41.39 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=49.6
Q ss_pred HhChhHHHhhcCCCCHHHHHH-HhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccccccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAA-QLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~-~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~ 114 (390)
+..|+-.|.++++.|+.+||+ .+++ +...+.|-++.|...|+|.. ..+| +.+|+.+..+..
T Consensus 18 QfsiL~~L~~~~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~---~~~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 18 TATILITIAKKDFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEK---SGDG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHSTTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEE---ETTE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeec---CCCC-eeeCHhHHHHHH
Confidence 344566677778999999999 9999 99999999999999999983 2334 888888776653
|
| >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.47 E-value=0.023 Score=49.31 Aligned_cols=65 Identities=14% Similarity=-0.032 Sum_probs=49.9
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.|+..|..++++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 49 ~q~~iL~~L~~~~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 49 NEHHILWIAYQLNGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHHHTSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence 35566777776679999999999999 999999999999999999875332222 366777776555
|
| >2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.021 Score=43.39 Aligned_cols=51 Identities=25% Similarity=0.262 Sum_probs=40.5
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.++.|+..|.+.|++|+.||+++++..+.-.+..+.++|+-|+..|+|.+.
T Consensus 36 ~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 36 AELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp SCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 355677888766799999999999851111467899999999999999874
|
| >2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A | Back alignment and structure |
|---|
Probab=93.12 E-value=0.03 Score=41.92 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=39.8
Q ss_pred CCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 59 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 59 ~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
+|..+||+++++ ++..+.++++.|...|+|.. ..++ .+++|+.+..+.
T Consensus 31 ~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~---~~d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 31 VYIQYIASKVNS----PHSYVWLIIKKFEEAKMVEC---ELEGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp EEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEE---EEETTEEEEEECHHHHHHH
T ss_pred cCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccC---CCCCCeEEEEEChhHHHHH
Confidence 999999999999 99999999999999999943 2233 478888776554
|
| >3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.051 Score=42.90 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=39.8
Q ss_pred HhChhHHHhhcC-C-CCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 46 QLGVFEIIAKAG-E-LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 46 ~lglfd~L~~~g-~-~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+..|+..|..++ | +|+.|||+++++ +...+.|.|+.|...|+|.+.
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 556777777654 4 899999999999 999999999999999999863
|
| >2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=92.85 E-value=0.037 Score=46.65 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=47.7
Q ss_pred HHhChhHHHhhcCC---CCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~---~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.|+..|..+++ +|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 35667788876553 999999999999 999999999999999999864221222 366666665444
|
| >2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.063 Score=38.01 Aligned_cols=55 Identities=13% Similarity=0.273 Sum_probs=45.3
Q ss_pred HHhChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecC
Q 016366 45 IQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (390)
Q Consensus 45 ~~lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t 106 (390)
.+-.|++.|.+.| |+++.+||+++|+ +..-+...|..|...|.|.. ...-.|.++
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~S---PkRCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSL---TSPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE---EETTEEEES
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccC---CCCceeeCC
Confidence 3556788888765 9999999999999 99999999999999999875 334466665
|
| >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A | Back alignment and structure |
|---|
Probab=92.75 E-value=0.084 Score=43.04 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=41.2
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|+..|..+|+.|..|||+++|+ .+..+.+.++.|...|++.+
T Consensus 8 ~~~~iL~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 8 IDRILVRELAADGRATLSELATRAGL----SVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 35567888887779999999999999 99999999999999999974
|
| >1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=92.73 E-value=0.15 Score=41.47 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=38.9
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
. |+++||+++++ ++..++++|..|...|+|...+ . .+.|++++...
T Consensus 24 ~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~r-G-~GGy~Lar~p~ 69 (145)
T 1xd7_A 24 T-SSEIIADSVNT----NPVVVRRMISLLKKADILTSRA-G-VPGASLKKDPA 69 (145)
T ss_dssp C-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS-S-SSSCEESSCGG
T ss_pred C-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEeec-C-CCCceecCCHH
Confidence 5 99999999999 9999999999999999997542 2 66788876443
|
| >2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=92.71 E-value=0.086 Score=42.70 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=41.2
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|++.|..+++.|..|||+++|+ .+..+.+.++.|...|++.+
T Consensus 6 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 6 IDLNIIEELKKDSRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 35567888887779999999999999 99999999999999999974
|
| >2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64 | Back alignment and structure |
|---|
Probab=92.68 E-value=0.088 Score=45.43 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=48.9
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccC-----CCcceecCccc
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNPVS 109 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~-----~~~~y~~t~~s 109 (390)
.+|..-.++.|+..|.. ||.|+.+||+.+|+ ++..+.+.|+.|...|+|...... ..-.|++++..
T Consensus 10 kaL~~~~rl~IL~~L~~-~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~ 80 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK-RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL 80 (202)
T ss_dssp HHHHSHHHHHHHHHHHH-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred HHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHH
Confidence 34444556666777765 69999999999999 999999999999999999864321 11237776543
|
| >3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A | Back alignment and structure |
|---|
Probab=92.61 E-value=0.057 Score=47.09 Aligned_cols=51 Identities=22% Similarity=0.334 Sum_probs=43.9
Q ss_pred cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 56 ~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
+++++..+||+.+++ ++..+.+.++.|...|+|.+. ....+.+|+.+..+.
T Consensus 18 ~~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~---~~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 18 HNKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKD---KKAGYLLTDLGLKLV 68 (214)
T ss_dssp CSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEe---cCCCeEECHHHHHHH
Confidence 469999999999999 999999999999999999873 345678888777555
|
| >2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* | Back alignment and structure |
|---|
Probab=92.31 E-value=0.077 Score=43.20 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=41.6
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|+..|..+++.|..+||+++|+ ++..+.+.++.|...|++.+
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE
Confidence 45678888887779999999999999 99999999999999999974
|
| >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A | Back alignment and structure |
|---|
Probab=92.22 E-value=0.11 Score=43.06 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=41.2
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|++.|..+++.|..|||+++|+ .+..+.+.++.|...|++.+
T Consensus 11 ~~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 11 TDIKILQVLQENGRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEee
Confidence 35567888887789999999999999 99999999999999999984
|
| >2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 | Back alignment and structure |
|---|
Probab=92.01 E-value=0.11 Score=38.57 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=39.3
Q ss_pred HhChhHHHhhcC--CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 46 QLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 46 ~lglfd~L~~~g--~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
++.|+..|...| +++..+||+++++ +...+.++|+.|...|+|.+
T Consensus 22 q~~Vl~~I~~~g~~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 22 EKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 455677777633 8999999999999 99999999999999999985
|
| >1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 | Back alignment and structure |
|---|
Probab=91.75 E-value=0.098 Score=42.04 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=37.2
Q ss_pred ChhHHHh-hcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 48 GVFEIIA-KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 48 glfd~L~-~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.++..|. ..+++|..+||+++|+ ++..+.+.++.|+..|+|.+.
T Consensus 30 ~il~~L~~~~~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 30 AVYAILYLSDKPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3455553 2369999999999999 999999999999999999864
|
| >1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1 | Back alignment and structure |
|---|
Probab=91.69 E-value=0.046 Score=53.71 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=51.4
Q ss_pred HHHhChhHHHhhc--CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 44 AIQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~--g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
.-++.|+..|.++ +++|..|||+++++ ++..+.|+++-|+..|+|.+.....++| ..+|+.+..+.
T Consensus 404 ~~q~~vl~~l~~~~~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 404 YEEIYILNHILRSESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHHHHHHHTCSCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHH
Confidence 3456677888777 78999999999999 9999999999999999998865433433 55566655443
|
| >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=91.50 E-value=0.11 Score=39.19 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=33.6
Q ss_pred cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 56 ~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
++++|..|||+.+|+ ++..+.+.|+.|...|+|.+.
T Consensus 34 ~~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 34 EKPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp CSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 469999999999999 999999999999999999864
|
| >2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=91.40 E-value=0.15 Score=42.74 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=41.3
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|+..|..+++.|..|||+++|+ .+..+.+.++.|...|++..
T Consensus 18 ~d~~IL~~L~~~~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 18 LDRNILRLLKKDARLTISELSEQLKK----PESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence 45567888887789999999999999 99999999999999999974
|
| >1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A | Back alignment and structure |
|---|
Probab=91.30 E-value=0.061 Score=42.05 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=38.9
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
++.|+..|..++++|..+||+.++..+.-.+..+.++|+.|+..|+|.+.
T Consensus 12 ~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 12 EWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEE
Confidence 44566666655799999999999930000689999999999999999874
|
| >2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=91.26 E-value=0.13 Score=41.91 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=41.3
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|+..|..+++.|..|||+++|+ .+..+.+.++.|...|++.+
T Consensus 10 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 10 VDMQLVKILSENSRLTYRELADILNT----TRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 45568888887789999999999999 99999999999999999974
|
| >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=91.22 E-value=0.13 Score=42.05 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=41.2
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|+..|.++++.|..|||+++|+ .+..+.+.++.|...|++..
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcce
Confidence 35567888887779999999999999 99999999999999999984
|
| >2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=91.19 E-value=0.11 Score=42.35 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=41.1
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|+..|..+|+.|..+||+++|+ .+..+.+.++.|...|++..
T Consensus 8 ~~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 8 IDKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 35567888887789999999999999 99999999999999999974
|
| >1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A | Back alignment and structure |
|---|
Probab=91.09 E-value=0.091 Score=41.21 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=41.2
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.++.|+..|..+|++|..|||++++.....++..+.++|+-|+..|+|.+.
T Consensus 11 ~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 11 AEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 456677888877899999999999741111688999999999999999874
|
| >3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=91.04 E-value=0.13 Score=42.65 Aligned_cols=46 Identities=11% Similarity=0.215 Sum_probs=42.0
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|++.|.++|++|..+||+++|+ .+..+.+-++.|...|++..
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 45678899988789999999999999 99999999999999999973
|
| >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 | Back alignment and structure |
|---|
Probab=90.78 E-value=0.097 Score=46.80 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=50.7
Q ss_pred HHhChhHHHhhcC--CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g--~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
.++.++..|..++ ++|..|||+++++ ++..+.++++-|+..|+|.+..+..+++ ..+|+.+..+.
T Consensus 159 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 159 VEFTILAIITSQNKNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHHTTTTCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHH
Confidence 4556777777654 5999999999999 9999999999999999999865444443 55677666554
|
| >1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41 | Back alignment and structure |
|---|
Probab=90.68 E-value=0.087 Score=40.40 Aligned_cols=45 Identities=27% Similarity=0.377 Sum_probs=37.9
Q ss_pred HhChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 46 ~lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
++.|+..+...| ++|..+||+.+|+ +...+++.|..|...|+|..
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~ 65 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSY 65 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 345666664335 8999999999999 99999999999999999975
|
| >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=90.64 E-value=0.14 Score=41.14 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=39.9
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
+..|+..|..+++.|..+||+++|+ .+..+.+.++.|...|++..
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEec
Confidence 4567778876678999999999999 99999999999999999974
|
| >4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A* | Back alignment and structure |
|---|
Probab=90.60 E-value=0.11 Score=42.27 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=40.5
Q ss_pred HhChhHHHhhc-----CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 46 QLGVFEIIAKA-----GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 46 ~lglfd~L~~~-----g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
++.++..|..+ +++|..+||+.+++ ++..+.++++.|+..|+|... ...+++ .++|+.+..+.
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~-~~~DrR~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVM-AGADARCKRIELTAKGRAAL 105 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC------------CCBCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee-CCCCCCeeEEEECHHHHHHH
Confidence 34455555543 36899999999999 999999999999999999542 222222 55666665544
|
| >2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39 | Back alignment and structure |
|---|
Probab=90.35 E-value=0.17 Score=40.55 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=40.9
Q ss_pred HHhChhHHHhh-cCCCCHHHHHHHhc----cCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAK-AGELSAPEIAAQLQ----AQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~-~g~~t~~eLa~~~~----~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.++.|+..|.. ++++|+.||++.++ + ++..+.++|+-|+..|+|.+.
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~----~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSARRDL----AYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 45667788876 47999999999998 6 888999999999999999874
|
| >1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A | Back alignment and structure |
|---|
Probab=90.32 E-value=0.23 Score=42.45 Aligned_cols=51 Identities=10% Similarity=0.230 Sum_probs=44.1
Q ss_pred HHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
++....+..|+..|.+ |+.|..+||+++|+ .+..+.+.++.|...|++...
T Consensus 16 ~l~d~~~~~IL~~L~~-~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 16 VMLEDTRRKILKLLRN-KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHSHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3344567778888885 79999999999999 999999999999999999864
|
| >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A | Back alignment and structure |
|---|
Probab=90.19 E-value=0.053 Score=47.89 Aligned_cols=67 Identities=7% Similarity=0.166 Sum_probs=51.3
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee-cccCC-----CcceecCcccc
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC-SVSGG-----ERLYALNPVSK 110 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~-~~~~~-----~~~y~~t~~s~ 110 (390)
.+|..-.++.|+..|.. ||+|+.+||+.+|+ .+..+.+.|+.|...|+|.. ..... ...|++++.+.
T Consensus 7 kaL~~~~R~~IL~~L~~-g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~ 79 (232)
T 2qlz_A 7 YILGNKVRRDLLSHLTC-MECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKS 79 (232)
T ss_dssp HHHTSHHHHHHHHHHTT-TTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEE
T ss_pred HHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchh
Confidence 44555567778888886 79999999999999 99999999999999999986 21111 12477777554
|
| >2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71 | Back alignment and structure |
|---|
Probab=90.07 E-value=0.3 Score=36.57 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~ 96 (390)
++.+..+||+++++ +...|.|.|..|...|+|.+..
T Consensus 35 ~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~ 70 (96)
T 2obp_A 35 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSV 70 (96)
T ss_dssp CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeec
Confidence 57899999999999 9999999999999999998753
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=90.04 E-value=0.41 Score=42.80 Aligned_cols=95 Identities=19% Similarity=0.211 Sum_probs=64.3
Q ss_pred CcceEEEEcCCccHHHHHHHhh-------CCCCeEEEecc----hHH------------------------Hh-------
Q 016366 227 NVERLVDVGGGFGVTLSMITSK-------YPQIKAVNFDL----PHV------------------------VQ------- 264 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~-------~p~~~~~~~Dl----~~~------------------------~~------- 264 (390)
-++.|+|+|+-.|..+..++.. .++-++.++|. |+. ++
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 4578999999999988886542 46778899983 321 11
Q ss_pred hCCC----CCCceEEECCCCCCC-------CCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 265 DAPS----YAGVEHVGGNMFESV-------PEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 265 ~a~~----~~rv~~~~gd~~~~~-------p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
..+. .++|+++.|++.+-+ |.. |++++-.=. -+.....|..+...|+|||.+++-|.
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~----Y~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL----YEPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC----HHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc----cchHHHHHHHHHHHhCCCcEEEEcCC
Confidence 0111 267999999997622 322 777666522 23355789999999999998876553
|
| >3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2 | Back alignment and structure |
|---|
Probab=89.79 E-value=0.16 Score=44.55 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccccccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~ 114 (390)
++.|..++|+++++ .+..+.+.++.|...|+|.+...+....+++|+.+..+..
T Consensus 26 ~~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 26 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLY 79 (230)
T ss_dssp EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHH
Confidence 46899999999999 9999999999999999999742222456788888776663
|
| >3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.42 E-value=0.25 Score=42.24 Aligned_cols=39 Identities=28% Similarity=0.226 Sum_probs=33.8
Q ss_pred HHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 52 IIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 52 ~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+.++| |.|..|||+++|+ ....+.+.|+.|...|++.+
T Consensus 17 ~~~~~g~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~ 56 (196)
T 3k2z_A 17 FIEKNGYPPSVREIARRFRI----TPRGALLHLIALEKKGYIER 56 (196)
T ss_dssp HHHHHSSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHhCCCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEe
Confidence 344445 8999999999999 77789999999999999985
|
| >2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=89.17 E-value=0.57 Score=36.37 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=51.9
Q ss_pred HHHHHHHhChhHHHhhcCCCCHHHHHHHhc--------cCCCCCC-CcHHHHHHHHhcCcceeecccCCC----cceecC
Q 016366 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQ--------AQNVKAP-MMLDRMLRLLVSHRVLECSVSGGE----RLYALN 106 (390)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~eLa~~~~--------~~~~~~~-~~l~r~L~~L~~~gll~~~~~~~~----~~y~~t 106 (390)
++....++-|+..|.. +|.+.-+|++.+. + ++ ..+.+.|+-|...|+|.......+ ..|++|
T Consensus 9 ~~~~~~~~~IL~~L~~-~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT 83 (118)
T 2esh_A 9 FRGWWLASTILLLVAE-KPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRIT 83 (118)
T ss_dssp HHHHHHHHHHHHHHHH-SCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEEC
T ss_pred cccchHHHHHHHHHHc-CCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEC
Confidence 3445566677778876 5999999999984 6 88 999999999999999976432111 248888
Q ss_pred ccccccc
Q 016366 107 PVSKYFV 113 (390)
Q Consensus 107 ~~s~~l~ 113 (390)
+.+....
T Consensus 84 ~~G~~~l 90 (118)
T 2esh_A 84 PQGKLYL 90 (118)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 8877554
|
| >2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=89.10 E-value=0.15 Score=40.43 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=32.0
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+.|.++||+++++ ++..+.+.++.|...|+|.+.
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 5899999999999 999999999999999999873
|
| >3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A | Back alignment and structure |
|---|
Probab=87.94 E-value=0.53 Score=32.45 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=39.6
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCc-HHHHHHHHhcCcceeec
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMM-LDRMLRLLVSHRVLECS 95 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~-l~r~L~~L~~~gll~~~ 95 (390)
+-.|++.|..+||.++=.||+++|+ .... +-+.|..|...|+|..+
T Consensus 12 ee~I~~fL~~~Gp~~AL~IAK~LGl----ktAK~VNp~LY~m~~~~lL~~D 58 (72)
T 3eyi_A 12 EEDIYRFLKDNGPQRALVIAQALGM----RTAKDVNRDLYRMKSRHLLDMD 58 (72)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTC----CSGGGTHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHcCCchHHHHHHHhCc----chhhhcCHHHHHHHHccCcCCC
Confidence 5568899998899999999999999 4444 88999999999999753
|
| >4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=87.86 E-value=0.16 Score=42.94 Aligned_cols=70 Identities=23% Similarity=0.263 Sum_probs=52.3
Q ss_pred HHHHHHHHHhChhHHHhhcCCCCHHHHHHHhc-cCCCCCCCcHHHHHHHHhcCcceeecccC--C---CcceecCccccc
Q 016366 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVSG--G---ERLYALNPVSKY 111 (390)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~-~~~~~~~~~l~r~L~~L~~~gll~~~~~~--~---~~~y~~t~~s~~ 111 (390)
..+|.--.++.|+..|.+ |+.|+.+||+.++ + ....+.+.|+.|...|+|...... . ...|++++.+..
T Consensus 17 ~~~La~P~Rl~il~~L~~-~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~ 91 (182)
T 4g6q_A 17 VDLLHHPLRWRITQLLIG-RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGD 91 (182)
T ss_dssp HHHTTSHHHHHHHHHTTT-SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTT
T ss_pred HHHhCCHHHHHHHHHHHh-CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEecccccc
Confidence 345555678888999986 6999999999996 8 888999999999999999753211 1 234777765543
Q ss_pred c
Q 016366 112 F 112 (390)
Q Consensus 112 l 112 (390)
+
T Consensus 92 ~ 92 (182)
T 4g6q_A 92 A 92 (182)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=87.67 E-value=2.3 Score=39.01 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=56.2
Q ss_pred cceEEEEcCCc--cHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCCcEEEeccccccCChhHH
Q 016366 228 VERLVDVGGGF--GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEGDAILMKWILHCWDDDHC 303 (390)
Q Consensus 228 ~~~iLDiG~G~--G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~D~i~~~~vlh~~~d~~~ 303 (390)
..+|.=||+|. +.++..+.+.....+++++|. ++.++.+.+..-+.-...|..+ ....+|+|+++- |....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHH
Confidence 36899999884 345556666544347888887 5566665544333223334333 234459988664 44456
Q ss_pred HHHHHHHHHhCCCCcEEE
Q 016366 304 LRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 304 ~~~L~~~~~~L~pgG~ll 321 (390)
.++++++...++||..++
T Consensus 108 ~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 108 REIAKKLSYILSEDATVT 125 (314)
T ss_dssp HHHHHHHHHHSCTTCEEE
T ss_pred HHHHHHHhhccCCCcEEE
Confidence 688999999999987544
|
| >3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei} | Back alignment and structure |
|---|
Probab=87.50 E-value=0.35 Score=39.43 Aligned_cols=67 Identities=19% Similarity=0.181 Sum_probs=50.3
Q ss_pred HHhChhHHHhhc--CCCCHHHHHHHhc-cCCCCCCCcHHHHHHHHhcCcceeecccC----C-C---cceecCccccccc
Q 016366 45 IQLGVFEIIAKA--GELSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVSG----G-E---RLYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~eLa~~~~-~~~~~~~~~l~r~L~~L~~~gll~~~~~~----~-~---~~y~~t~~s~~l~ 113 (390)
.+..|++.|..+ +..|+++|++.++ + ....+.+.|+.|+..|+|...... . + ..|.+|+.+....
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence 566677777654 3589999999999 8 999999999999999999853110 1 1 1589998887555
Q ss_pred cC
Q 016366 114 SN 115 (390)
Q Consensus 114 ~~ 115 (390)
..
T Consensus 106 ~~ 107 (151)
T 3u1d_A 106 RA 107 (151)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A* | Back alignment and structure |
|---|
Probab=87.29 E-value=2.2 Score=38.54 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=49.2
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCC----CeEEEecchHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhH
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQ----IKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDH 302 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~----~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~ 302 (390)
++..|+-||||.|.....+.+.+|+ ++++++|-..-.......+ ++.+.... + ++.
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~~~~l~~~~----------------NV~li~~f---v-de~ 119 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLR----------------DVTLVTRF---V-DEE 119 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCT----------------TEEEEECC---C-CHH
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcchhhhcCCC----------------cEEEEecc---C-CHH
Confidence 4569999999999999999887775 6888888210000001111 44443332 2 232
Q ss_pred HHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 303 CLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 303 ~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
-+++.++.+....+++|.|.-...
T Consensus 120 ---dl~~l~~~~~~~~iLLISDIRS~r 143 (307)
T 3mag_A 120 ---YLRSIKKQLHPSKIILISDVRSKR 143 (307)
T ss_dssp ---HHHHHHHHHTTSCEEEEECCCC--
T ss_pred ---HHHHHHHhccCCCEEEEEEecCCC
Confidence 256666677778899998876543
|
| >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 | Back alignment and structure |
|---|
Probab=87.26 E-value=0.29 Score=43.65 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=50.1
Q ss_pred HHhChhHHHhhc--CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
-+..++..|.++ +++|..|||+++++ ++..+.++++-|...|+|.+..+..+.+ ..+|+.+..+.
T Consensus 35 ~q~~vL~~L~~~~~~~~~~~el~~~l~~----~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 35 KEFILLTYLFHQQENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHHHHHSCSCSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHH
Confidence 345566777653 47999999999999 9999999999999999998865544443 55677766544
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=87.21 E-value=0.66 Score=41.40 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS 268 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~ 268 (390)
.++..+++.+. ..+..|||..||+|.++.+..+. +.+++++|+ +..++.+++
T Consensus 200 ~l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~ 252 (260)
T 1g60_A 200 DLIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANF 252 (260)
T ss_dssp HHHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 34455665543 45679999999999999998876 467888888 767766553
|
| >2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=86.91 E-value=0.48 Score=37.59 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=42.1
Q ss_pred HHHHHhChhHHHhhc-CCCCHHHHHHHh-----ccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 42 QAAIQLGVFEIIAKA-GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 42 ~~a~~lglfd~L~~~-g~~t~~eLa~~~-----~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.+..+.-|++.|... ++.|++||.+++ ++ +..-+-|.|+.|+..|+|.+-
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEE
Confidence 355677788888754 489999999999 66 888999999999999999864
|
| >1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6 | Back alignment and structure |
|---|
Probab=86.91 E-value=0.36 Score=36.39 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=39.2
Q ss_pred HHHHHHHhChhH-HHhhcCCC-CHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 40 ATQAAIQLGVFE-IIAKAGEL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 40 ~l~~a~~lglfd-~L~~~g~~-t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.++..++..|.+ .+..+..+ |..+||+.+|+ ....+++-|+.|...|+|..
T Consensus 15 ~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~ 67 (102)
T 1v4r_A 15 DVATHFRTLIKSGELAPGDTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSS 67 (102)
T ss_dssp HHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEE
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 344455555555 33432255 99999999999 99999999999999999986
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=86.48 E-value=1.8 Score=40.30 Aligned_cols=122 Identities=11% Similarity=0.032 Sum_probs=72.3
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCC-eEEEecc-hHHHhhCCC-CCCceEEECCCCCC----CC--CCcEEEeccccccC
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPS-YAGVEHVGGNMFES----VP--EGDAILMKWILHCW 298 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~~----~p--~~D~i~~~~vlh~~ 298 (390)
..+++|+-||.|.++..+.++.-+. .+..+|+ +.+++..+. .+...++.+|+.+- ++ ..|+++...-...|
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 3589999999999999999875322 3566676 666666554 35567888998762 22 24999988776666
Q ss_pred ChhH--------HHHHHHHH---HHhCC--CCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 299 DDDH--------CLRILKNC---YKAVP--GNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 299 ~d~~--------~~~~L~~~---~~~L~--pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
+..- .-.++.++ .+.++ | .+++.|.+..- . .+ .+.+.+.+.
T Consensus 82 S~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P--~~~~~ENV~~l-------------~---------~~--~~~~~i~~~ 135 (343)
T 1g55_A 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLP--KYILLENVKGF-------------E---------VS--STRDLLIQT 135 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCC--SEEEEEEETTG-------------G---------GS--HHHHHHHHH
T ss_pred hhcCCcCCccCccchHHHHHHHHHHHhcCCC--CEEEEeCCccc-------------c---------CH--HHHHHHHHH
Confidence 5221 11233333 33444 4 35666766311 0 01 135677888
Q ss_pred HHHCCCCeeE
Q 016366 366 AIAAGFKGIN 375 (390)
Q Consensus 366 l~~aGf~~~~ 375 (390)
|++.||.+..
T Consensus 136 l~~~GY~v~~ 145 (343)
T 1g55_A 136 IENCGFQYQE 145 (343)
T ss_dssp HHHTTEEEEE
T ss_pred HHHCCCeeEE
Confidence 8999998754
|
| >1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* | Back alignment and structure |
|---|
Probab=85.81 E-value=0.5 Score=43.77 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=45.6
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~ 108 (390)
+..|++.|.+++++|.++||+++++ .+..+.|-|+.|...|++.+. ..+..|++.+.
T Consensus 7 ~~~Il~~L~~~~~~s~~eLa~~l~v----S~~ti~r~l~~L~~~G~~i~~--~~g~GY~l~~~ 63 (321)
T 1bia_A 7 PLKLIALLANGEFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFT--VPGKGYSLPEP 63 (321)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEE--ETTTEEECSSC
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCcEEE--ecCCCcEEeec
Confidence 3456777876568999999999999 999999999999999998653 23446877653
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=85.30 E-value=0.88 Score=46.61 Aligned_cols=95 Identities=14% Similarity=0.169 Sum_probs=55.3
Q ss_pred CcceEEEEcCCccHHHHHHHhhC-------CC-----CeEEEecc----hHHHhhCCC---------------C------
Q 016366 227 NVERLVDVGGGFGVTLSMITSKY-------PQ-----IKAVNFDL----PHVVQDAPS---------------Y------ 269 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~-------p~-----~~~~~~Dl----~~~~~~a~~---------------~------ 269 (390)
+.-+|+|+|-|+|.......+.+ |+ ++++.++. ++.+..+-. .
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 44699999999998776665542 22 55777774 333331111 0
Q ss_pred --------C--CceEEECCCCCC---CC---C--CcEEEeccccc-cCChhHHHHHHHHHHHhCCCCcEEE
Q 016366 270 --------A--GVEHVGGNMFES---VP---E--GDAILMKWILH-CWDDDHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 270 --------~--rv~~~~gd~~~~---~p---~--~D~i~~~~vlh-~~~d~~~~~~L~~~~~~L~pgG~ll 321 (390)
+ ++++..||+.+- ++ . .|++++.-.-- --|+-.-..+++.+++.++|||.+.
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~ 216 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLA 216 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEE
Confidence 1 244566777552 21 1 28887643211 1122224478999999999998765
|
| >2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* | Back alignment and structure |
|---|
Probab=84.93 E-value=0.93 Score=36.58 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=40.7
Q ss_pred HHHHhChhHHHhhc-CCCCHHHHHHHh-----ccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 43 AAIQLGVFEIIAKA-GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 43 ~a~~lglfd~L~~~-g~~t~~eLa~~~-----~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+..+.-|++.|... ++.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+.
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEE
Confidence 34556688888753 489999999999 56 788899999999999999864
|
| >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=84.82 E-value=0.57 Score=44.34 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 37 ~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.+++++..-+..|++.|. +|++|..|||+++|+ .+..+.++++.|...|++.+.
T Consensus 13 ~~~~~~~~~~~~il~~l~-~~~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~ 66 (380)
T 2hoe_A 13 MPKSVRAENISRILKRIM-KSPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp ---------CCCSHHHHH-HSCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred CchhHHHHHHHHHHHHHH-cCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 456677777888999999 789999999999999 999999999999999999874
|
| >1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=84.67 E-value=0.58 Score=33.11 Aligned_cols=42 Identities=10% Similarity=0.089 Sum_probs=35.1
Q ss_pred hHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 50 FEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 50 fd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
++.|..++..|+.+||.++|+ ...-+.|.|.-|...|.|...
T Consensus 21 i~~L~~~~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 21 VLSLNTNDYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp HHTSCTTCEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCCCcchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecC
Confidence 335555335999999999999 888999999999999999753
|
| >2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8 | Back alignment and structure |
|---|
Probab=84.63 E-value=0.19 Score=47.20 Aligned_cols=62 Identities=8% Similarity=0.058 Sum_probs=0.0
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccccC
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSN 115 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~ 115 (390)
+..++..|..++++|..|||+++++ ++..++|.|+.|...|+|.+ ......+|+.+..+...
T Consensus 22 ~~~iL~~l~~~~~~t~~eLa~~l~v----s~~Tv~r~l~~Le~~Glv~~----~~~gi~LT~~G~~~~~~ 83 (345)
T 2o0m_A 22 RFQILRNIYWMQPIGRRSLSETMGI----TERVLRTETDVLKQLNLIEP----SKSGMTLTERGLEVYQG 83 (345)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE----EecceEEcHHHHHHHHH
Confidence 4567777777679999999999999 99999999999999999974 22346688877766643
|
| >1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A | Back alignment and structure |
|---|
Probab=84.26 E-value=0.43 Score=41.84 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=39.7
Q ss_pred CHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 60 SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 60 t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
+..+||+++++ ++..+.+.++.|...|+|.+. .+..+.+|+.+..+.
T Consensus 26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~---~~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVA---GDRHLELTEKGRALA 72 (230)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECHHHHHHH
T ss_pred cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe---CCccEEECHHHHHHH
Confidence 44999999999 999999999999999999973 345688888776554
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=84.15 E-value=0.54 Score=48.34 Aligned_cols=118 Identities=12% Similarity=0.106 Sum_probs=69.2
Q ss_pred CcceEEEEcCCccHHHHHHHhhC-------CC-----CeEEEecc----hHHHhhCCC----------------------
Q 016366 227 NVERLVDVGGGFGVTLSMITSKY-------PQ-----IKAVNFDL----PHVVQDAPS---------------------- 268 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~-------p~-----~~~~~~Dl----~~~~~~a~~---------------------- 268 (390)
+.-+|+|+|.|+|.......+.+ |+ ++++.++. .+.+..+-.
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 45699999999998777766542 32 56777774 222222100
Q ss_pred -------CC--CceEEECCCCCC---CC---CC--cEEEecccc-ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCC
Q 016366 269 -------YA--GVEHVGGNMFES---VP---EG--DAILMKWIL-HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI 330 (390)
Q Consensus 269 -------~~--rv~~~~gd~~~~---~p---~~--D~i~~~~vl-h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 330 (390)
.+ .++++.||+.+- ++ .+ |++++...- ..-|+-.-..+++.+.+.++|||.+.- ..
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t--~~---- 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST--FT---- 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE--SC----
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe--cc----
Confidence 01 355677887652 22 12 887764311 111222234788888888888887542 10
Q ss_pred CCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 331 PEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 331 ~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
.....++.|.++||.+.++.
T Consensus 212 ---------------------------~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 212 ---------------------------AAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp ---------------------------CCHHHHHHHHHTTCEEEEEE
T ss_pred ---------------------------CcHHHHHHHHhCCeEEEecc
Confidence 01345778889999877654
|
| >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A | Back alignment and structure |
|---|
Probab=84.11 E-value=0.58 Score=41.16 Aligned_cols=53 Identities=8% Similarity=0.098 Sum_probs=42.5
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecC
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t 106 (390)
+.-|.-.|.. |+.|.++||+.+|+ ++.-+...|.-|...|+|.+ ..+++....
T Consensus 167 ~~~l~~~l~~-~~~t~~~la~~~~l----~~~~V~~~l~~L~~~~~v~~---~~~~~~~~~ 219 (232)
T 2qlz_A 167 LAILHYLLLN-GRATVEELSDRLNL----KEREVREKISEMARFVPVKI---INDNTVVLD 219 (232)
T ss_dssp HHHHHHHHHS-SEEEHHHHHHHHTC----CHHHHHHHHHHHTTTSCEEE---ETTTEEEEC
T ss_pred HHHHHHHHhc-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhcCCeEE---ecCCeEEec
Confidence 3445556665 69999999999999 99999999999999999975 345555443
|
| >2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=83.66 E-value=0.68 Score=30.61 Aligned_cols=45 Identities=11% Similarity=0.195 Sum_probs=38.9
Q ss_pred HhChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 46 ~lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
+-.|++.+..+| -+.++.++++.|+ +..-+-..|+-|.+.|++..
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeec
Confidence 345678887764 6999999999999 99999999999999999874
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=83.41 E-value=4.1 Score=33.19 Aligned_cols=104 Identities=14% Similarity=0.168 Sum_probs=61.8
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecch-----HHHhhCCCCCCceEEECCCCCCCCC-----
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP-----HVVQDAPSYAGVEHVGGNMFESVPE----- 285 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~-----~~~~~a~~~~rv~~~~gd~~~~~p~----- 285 (390)
.+.+..+. .-.+-|||+|=|+|..=.++.+.+|+.++.++|.. +... +.=.++.||+.+-+|.
T Consensus 31 ~~a~~~v~--~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P-----~~e~~ilGdi~~tL~~~~~r~ 103 (174)
T 3iht_A 31 EHAIAQTA--GLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTP-----PEAQLILGDIRETLPATLERF 103 (174)
T ss_dssp HHHHHHTT--TCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCC-----CGGGEEESCHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCC-----chHheecccHHHHHHHHHHhc
Confidence 34444443 34567999999999999999999999999999941 1111 2345777777653221
Q ss_pred C-cEEEeccccccCChhH----HHHHHHHHHHhCCCCcEEEEEecc
Q 016366 286 G-DAILMKWILHCWDDDH----CLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 286 ~-D~i~~~~vlh~~~d~~----~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+ .+.+...=+.....++ +..+=.-+..+|.|||.++-..+.
T Consensus 104 g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl 149 (174)
T 3iht_A 104 GATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM 149 (174)
T ss_dssp CSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred CCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 2 3333222222222222 222333455678889977654444
|
| >4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=83.33 E-value=1.3 Score=34.39 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=52.0
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHh------ccCCCCCCCcHHHHHHHHhcCcceeecccC-----CCcceecCc
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQL------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNP 107 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~------~~~~~~~~~~l~r~L~~L~~~gll~~~~~~-----~~~~y~~t~ 107 (390)
.++.-.+++-|+..|.. +|.+.-+|++.+ ++ .+..+...|+-|...|+|...... ....|++|+
T Consensus 6 ~l~~g~l~~~IL~lL~~-~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~ 80 (117)
T 4esf_A 6 EMLKGSLEGCVLEIISR-RETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNE 80 (117)
T ss_dssp HHHHHHHHHHHHHHHHH-SCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECH
T ss_pred HHHHChHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECH
Confidence 34455556666777776 599999999998 67 889999999999999999864211 112488898
Q ss_pred cccccc
Q 016366 108 VSKYFV 113 (390)
Q Consensus 108 ~s~~l~ 113 (390)
.+....
T Consensus 81 ~G~~~l 86 (117)
T 4esf_A 81 AGRQEL 86 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887555
|
| >1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1 | Back alignment and structure |
|---|
Probab=83.29 E-value=0.61 Score=39.44 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=45.1
Q ss_pred HHHhChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcc-eeecccCCCcceecCcc
Q 016366 44 AIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV-LECSVSGGERLYALNPV 108 (390)
Q Consensus 44 a~~lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gl-l~~~~~~~~~~y~~t~~ 108 (390)
--...|.+.|..+ +++|..|||+++|+ ..+.+.|-++.|...|+ +.. ..+.|.+.+.
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~----~~~Gy~l~~~ 79 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVA----TPRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEE----ETTEEECCTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE----ECCEEEECCc
Confidence 3456678888754 47999999999999 99999999999999999 653 2356766653
|
| >2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66 | Back alignment and structure |
|---|
Probab=83.22 E-value=0.45 Score=36.04 Aligned_cols=43 Identities=28% Similarity=0.328 Sum_probs=34.8
Q ss_pred ChhHHHhhcCCC-CHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 48 GVFEIIAKAGEL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 48 glfd~L~~~g~~-t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.|...|..++.+ |..+||+.+|+ ...-+++-|+.|...|+|..
T Consensus 32 ~I~~~l~~g~~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~ 75 (102)
T 2b0l_A 32 HIFEELDGNEGLLVASKIADRVGI----TRSVIVNALRKLESAGVIES 75 (102)
T ss_dssp HHTTSSBTTEEEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhhhcCCCcCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 334444432245 99999999999 99999999999999999986
|
| >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A | Back alignment and structure |
|---|
Probab=82.58 E-value=0.92 Score=43.28 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=42.4
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.-+..|++.|..+|++|..|||+++|+ .+..+.++++.|...|++.+.
T Consensus 16 ~n~~~il~~l~~~~~~sr~~la~~~~l----s~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 16 TNAGAVYRLIDQLGPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHHHHSSCSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEee
Confidence 334457888888889999999999999 999999999999999999874
|
| >1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A* | Back alignment and structure |
|---|
Probab=82.50 E-value=2.2 Score=32.07 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=35.1
Q ss_pred HHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhc
Q 016366 42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVS 88 (390)
Q Consensus 42 ~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~ 88 (390)
..+.++||+..|.. |..|..|||+.+|+ ....+.|+-++|..
T Consensus 43 ~l~~R~~l~~~L~~-ge~TQREIA~~lGi----S~stISRi~r~L~~ 84 (101)
T 1jhg_A 43 ALGTRVRIIEELLR-GEMSQRELKNELGA----GIATITRGSNSLKA 84 (101)
T ss_dssp HHHHHHHHHHHHHH-CCSCHHHHHHHHCC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCcCHHHHHHHHCC----ChhhhhHHHHHHHH
Confidence 45667999999987 57999999999999 88888888776643
|
| >3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=81.87 E-value=0.62 Score=35.52 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=48.4
Q ss_pred HHHHhChhHHHhhcCCCCHHHHHHHh----ccCCCCCCCcHHHHHHHHhcCcceeecccCCCc----ceecCccccccc
Q 016366 43 AAIQLGVFEIIAKAGELSAPEIAAQL----QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER----LYALNPVSKYFV 113 (390)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~eLa~~~----~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~----~y~~t~~s~~l~ 113 (390)
-..++-|+..|.. +|.+.-+|++.+ ++ ++..+.+.|+.|...|+|.......++ .|++|+.+....
T Consensus 8 g~l~~~IL~~L~~-~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l 81 (108)
T 3l7w_A 8 LLIEYLILAIVSK-HDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHL 81 (108)
T ss_dssp HHHHHHHHHHHHH-SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHH
Confidence 3455566777776 588888888775 78 899999999999999999864221122 388888877554
|
| >2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C* | Back alignment and structure |
|---|
Probab=81.86 E-value=1.3 Score=29.76 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=28.5
Q ss_pred hHHHhhcCCCCHHHHHHHh-----ccCCCCCCCcHHHHHHHHhcCcce
Q 016366 50 FEIIAKAGELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVL 92 (390)
Q Consensus 50 fd~L~~~g~~t~~eLa~~~-----~~~~~~~~~~l~r~L~~L~~~gll 92 (390)
...+..++++|++||++.+ ++ ...-+.|.|+ ..|++
T Consensus 11 ~~ll~~~~~~t~~el~~~l~~~~~~v----s~~Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 11 REIITSNEIETQDELVDMLKQDGYKV----TQATVSRDIK---ELHLV 51 (64)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHTTCCC----CHHHHHHHHH---HHTCE
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCCCc----CHHHHHHHHH---HcCCE
Confidence 3445555699999999999 88 8888888888 55777
|
| >1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=81.79 E-value=1.3 Score=42.72 Aligned_cols=50 Identities=16% Similarity=0.341 Sum_probs=43.0
Q ss_pred HHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 42 ~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+..-+..|++.|..+|++|..|||+++|+ .+..+.++++.|...|++.+.
T Consensus 37 r~~n~~~il~~l~~~~~~sr~ela~~~gl----s~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 37 KQINAGRVYKLIDQKGPISRIDLSKESEL----APASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 33444557888887789999999999999 999999999999999999874
|
| >2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=81.76 E-value=0.4 Score=38.38 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=38.3
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC-----cceecCcccc
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE-----RLYALNPVSK 110 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~-----~~y~~t~~s~ 110 (390)
..|.++||+++|+ ++.-+.++|+-|...|++......+. ..|.++|.-.
T Consensus 51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~e 104 (135)
T 2v79_A 51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWG 104 (135)
T ss_dssp SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHH
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHH
Confidence 6899999999999 99999999999999999987321111 3466666443
|
| >2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=81.54 E-value=1.2 Score=36.05 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=41.7
Q ss_pred HHHHhChhHHHhhc-CCCCHHHHHHHh-----ccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 43 AAIQLGVFEIIAKA-GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 43 ~a~~lglfd~L~~~-g~~t~~eLa~~~-----~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+..+.-|++.|... ++.|++||.+.+ ++ +..-+-|.|+.|+..|+|.+.
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVL 80 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEE
Confidence 56677788888764 489999999998 56 888999999999999999864
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=81.51 E-value=4.8 Score=37.93 Aligned_cols=96 Identities=9% Similarity=0.059 Sum_probs=62.3
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-CCCceEEECCCCCC----C-----C--CCcEEEecccc
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFES----V-----P--EGDAILMKWIL 295 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~~----~-----p--~~D~i~~~~vl 295 (390)
.+++|+-||.|.++..+.++.-+ .+..+|+ +..++..+. .+...++++|+.+- + + ..|+|+..--.
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~-~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPC 81 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFD-VKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPC 81 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCE-EEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCC
T ss_pred CeEEEEccCcCHHHHHHHHCCCc-EEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCC
Confidence 47999999999999999887522 2346676 556555543 46788889998762 2 1 23999988877
Q ss_pred ccCCh-------hHHHHHHH---HHHHhCCCCcEEEEEeccc
Q 016366 296 HCWDD-------DHCLRILK---NCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 296 h~~~d-------~~~~~~L~---~~~~~L~pgG~lli~e~~~ 327 (390)
..|+. +..-.++. ++.+.++| ++++.|.+.
T Consensus 82 Q~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P--~~~v~ENV~ 121 (376)
T 3g7u_A 82 QGFSSIGKGNPDDSRNQLYMHFYRLVSELQP--LFFLAENVP 121 (376)
T ss_dssp CTTC-------CHHHHHHHHHHHHHHHHHCC--SEEEEEECT
T ss_pred CCcccccCCCCCCchHHHHHHHHHHHHHhCC--CEEEEecch
Confidence 77651 11122332 34445566 467778774
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=81.47 E-value=2.4 Score=38.21 Aligned_cols=98 Identities=10% Similarity=-0.058 Sum_probs=67.7
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----CCceEEECCCCCC----CCC---CcEEEecccc
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFES----VPE---GDAILMKWIL 295 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~~----~p~---~D~i~~~~vl 295 (390)
...+||+=+|+|.++.+++++. -+++.+|+ +..++..+++ ++++++..|.++- .|. .|+|++.=-+
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~~--d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRSQ--DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCTT--SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 4668999999999999999943 67888887 6666655543 6799999997541 232 3998877655
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCcEEEEEecccCC
Q 016366 296 HCWDDDHCLRILKNCYK--AVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~--~L~pgG~lli~e~~~~~ 329 (390)
..- .+..++++.+.+ .+.|+|.++|-=++.+.
T Consensus 170 e~k--~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~ 203 (283)
T 2oo3_A 170 ERK--EEYKEIPYAIKNAYSKFSTGLYCVWYPVVNK 203 (283)
T ss_dssp CST--THHHHHHHHHHHHHHHCTTSEEEEEEEESSH
T ss_pred CCC--cHHHHHHHHHHHhCccCCCeEEEEEEeccch
Confidence 421 234466666655 34588988887666543
|
| >2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.46 E-value=0.73 Score=34.35 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=40.3
Q ss_pred HHhChhHHHhhcC--CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~g--~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.+.-|+..+.+.| +++..+|+.++++ +...+.++|+.|++.|++...
T Consensus 38 ~E~lVy~~I~~aGn~GIw~kdL~~~tnL----~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 38 QEKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCEEEe
Confidence 4555677777644 7999999999999 999999999999999999863
|
| >3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=81.30 E-value=1 Score=34.98 Aligned_cols=72 Identities=13% Similarity=0.163 Sum_probs=54.0
Q ss_pred HHHHHHHHHhChhHHHhhcCCCCHHHHHHHhc------cCCCCCCCcHHHHHHHHhcCcceeecccC-CC----cceecC
Q 016366 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQ------AQNVKAPMMLDRMLRLLVSHRVLECSVSG-GE----RLYALN 106 (390)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~------~~~~~~~~~l~r~L~~L~~~gll~~~~~~-~~----~~y~~t 106 (390)
.+++.-..++-|+..|.. +|.+.-+|++.+. + .+..+.+.|+.|...|+|...... .+ ..|++|
T Consensus 8 ~~l~~g~l~~~IL~lL~~-~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT 82 (117)
T 3elk_A 8 ERILHGLITLYILKELVK-RPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHIT 82 (117)
T ss_dssp CHHHHHHHHHHHHHHHHH-SCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEEC
T ss_pred HHHHhhHHHHHHHHHHHc-CCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEEC
Confidence 345556667777888876 6999999999887 6 788999999999999999864210 11 248999
Q ss_pred cccccccc
Q 016366 107 PVSKYFVS 114 (390)
Q Consensus 107 ~~s~~l~~ 114 (390)
+.+.....
T Consensus 83 ~~G~~~l~ 90 (117)
T 3elk_A 83 DAGKKFLC 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98875553
|
| >3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=81.28 E-value=1.9 Score=28.51 Aligned_cols=44 Identities=25% Similarity=0.237 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~ 108 (390)
.++|+.|+|...++ +....+.-|+.|-+.|-+. +...+|++.|-
T Consensus 17 QGMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LR----KRsSRYrlkph 60 (68)
T 3i71_A 17 QGMTAGEVAAHFGW----PLEKARNALEQLFSAGTLR----KRSSRYRLKPH 60 (68)
T ss_dssp TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEE----EECCEEEECC-
T ss_pred ccccHHHHHHHhCC----cHHHHHHHHHHHHhcchhh----hhccccccCcc
Confidence 38999999999999 8888889999999999998 46789988763
|
| >3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A* | Back alignment and structure |
|---|
Probab=81.06 E-value=1.1 Score=41.49 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=45.0
Q ss_pred HhChhHHHhhc-C-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcc
Q 016366 46 QLGVFEIIAKA-G-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (390)
Q Consensus 46 ~lglfd~L~~~-g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~ 108 (390)
+..|++.|.++ | ++|.++||+++|+ ....+.+.++.|...|+..++ ..+..|++.+.
T Consensus 5 ~~~iL~~L~~~~g~~~Sg~eLa~~lgv----Sr~aV~k~i~~L~~~G~~i~~--~~~~GY~L~~~ 63 (323)
T 3rkx_A 5 SQDVLQLLYKNKPNYISGQSIAESLNI----SRTAVKKVIDQLKLEGCKIDS--VNHKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEE--ETTTEEEEEEC
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHCC----CHHHHHHHHHHHHhcCCeEEE--eCCCeEEEecC
Confidence 34577777432 3 8999999999999 999999999999999996653 24567888764
|
| >2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... | Back alignment and structure |
|---|
Probab=81.02 E-value=1.2 Score=38.73 Aligned_cols=49 Identities=10% Similarity=0.204 Sum_probs=41.0
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
+.+..+||+++++ ++..+.+.++.|...|+|.+ .....+++|+.+..+.
T Consensus 24 ~~~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r---~~~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 24 TPLRARIAERLEQ----SGPTVSQTVARMERDGLVVV---ASDRSLQMTPTGRTLA 72 (226)
T ss_dssp CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---CTTSBEEECHHHHHHH
T ss_pred CccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE---eCCCCeEECHHHHHHH
Confidence 3456999999999 99999999999999999987 3445688998887555
|
| >3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A* | Back alignment and structure |
|---|
Probab=80.32 E-value=1.8 Score=33.34 Aligned_cols=70 Identities=11% Similarity=0.196 Sum_probs=52.1
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHh--------ccCCCCCCCcHHHHHHHHhcCcceeecccC-CC----cceec
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-GE----RLYAL 105 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~--------~~~~~~~~~~l~r~L~~L~~~gll~~~~~~-~~----~~y~~ 105 (390)
.++.-..++-|+..|.+ +|.+.-+|.+.+ ++ ++..+.+.|+.|...|+|...... .+ ..|++
T Consensus 7 ~~~~g~l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~L 81 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ-GDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRL 81 (116)
T ss_dssp HHHHHHHHHHHHHHHHH-CCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEE
T ss_pred HHHhchHHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEE
Confidence 45555566677778876 699999999887 56 889999999999999999864211 11 24889
Q ss_pred Cccccccc
Q 016366 106 NPVSKYFV 113 (390)
Q Consensus 106 t~~s~~l~ 113 (390)
|+.+....
T Consensus 82 T~~G~~~l 89 (116)
T 3f8b_A 82 TEIGHENM 89 (116)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 98887555
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=80.15 E-value=4.5 Score=38.31 Aligned_cols=61 Identities=13% Similarity=0.241 Sum_probs=37.2
Q ss_pred CchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-------CCCeEEEecchH
Q 016366 196 NPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------PQIKAVNFDLPH 261 (390)
Q Consensus 196 ~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-------p~~~~~~~Dl~~ 261 (390)
.|+....|.+....+-. . ...... .+..-+|+|+|+|.|.++..+++.. ..+++..++...
T Consensus 54 apeis~~FGe~la~~~~---~-~w~~~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp 121 (387)
T 1zkd_A 54 SPEISQMFGELLGLWSA---S-VWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP 121 (387)
T ss_dssp HHHHCHHHHHHHHHHHH---H-HHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred CCchHHHHHHHHHHHHH---H-HHHHcC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCH
Confidence 35555566655433221 1 112222 3345689999999999998887642 345788888733
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=80.03 E-value=8.7 Score=34.30 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=52.9
Q ss_pred ceEEEEcCCc-c-HHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHHH
Q 016366 229 ERLVDVGGGF-G-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLR 305 (390)
Q Consensus 229 ~~iLDiG~G~-G-~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~ 305 (390)
.+|.=||+|. | .++..+.+..+..+++++|. ++.++.+++...+.....|..+.+...|+|++.- ++.....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilav-----p~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAV-----PIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECS-----CHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcC-----CHHHHHH
Confidence 4788899885 3 45555666555667888887 5555544332222122334332233449887654 4455568
Q ss_pred HHHHHHHh-CCCCcEEE
Q 016366 306 ILKNCYKA-VPGNGKVI 321 (390)
Q Consensus 306 ~L~~~~~~-L~pgG~ll 321 (390)
+++.+... ++|+..++
T Consensus 82 v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 82 FIKILADLDLKEDVIIT 98 (290)
T ss_dssp HHHHHHTSCCCTTCEEE
T ss_pred HHHHHHhcCCCCCCEEE
Confidence 88888888 88876544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 390 | ||||
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 1e-72 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 2e-68 | |
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 4e-64 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 2e-36 | |
| d1fp1d1 | 110 | a.4.5.29 (D:19-128) Chalcone O-methyltransferase { | 3e-34 | |
| d1kyza1 | 107 | a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic | 3e-34 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 1e-32 | |
| d1fp2a1 | 101 | a.4.5.29 (A:8-108) Isoflavone O-methyltransferase | 2e-20 | |
| d1tw3a1 | 85 | a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer | 3e-15 | |
| d1qzza1 | 92 | a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R | 3e-13 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 3e-05 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 6e-05 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 224 bits (573), Expect = 1e-72
Identities = 100/273 (36%), Positives = 150/273 (54%), Gaps = 33/273 (12%)
Query: 120 SLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGI 179
L F ++ W K+AV++ I
Sbjct: 3 YLASFTTFLCYPALLQVWM------------------------------NFKEAVVDEDI 32
Query: 180 -PFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGF 238
F VHG+ +E+ + + N+ ++++M + M+R+LE Y GF+ + LVDVGGG
Sbjct: 33 DLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGS 92
Query: 239 GVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCW 298
G L +I SKYP IK +NFDLP V+++AP +G+EHVGG+MF SVP+GDA+++K + H W
Sbjct: 93 GRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNW 152
Query: 299 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERT 358
D+ C+ L NC+KA+ NGKVI++ I+PE P S ++ S LD L+ GGRERT
Sbjct: 153 SDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFIT-VGGRERT 211
Query: 359 KKEYTELAIAAGFKGINFASCVCNLY-IMEFFK 390
+K+Y +L+ +GF A N +MEF+K
Sbjct: 212 EKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 244
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 214 bits (545), Expect = 2e-68
Identities = 132/272 (48%), Positives = 175/272 (64%), Gaps = 30/272 (11%)
Query: 117 DGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVME 176
DG S+ + DKV MESWY LKDAV++
Sbjct: 1 DGVSISALNLMNQDKVLMESWY------------------------------HLKDAVLD 30
Query: 177 GGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGG 236
GGIPFN+ +GM FEY +PRFN+ +++ M +HSTI M++ILE Y GF+ ++ LVDVGG
Sbjct: 31 GGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGG 90
Query: 237 GFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILH 296
G G ++ I SKYP IK +NFDLPHV++DAPSY GVEHVGG+MF S+P+ DA+ MKWI H
Sbjct: 91 GTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICH 150
Query: 297 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE 356
W D+HCL+ LKNCY+A+P NGKVIV I+P P+ S A + +DV+++ + GG+E
Sbjct: 151 DWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKE 210
Query: 357 RTKKEYTELAIAAGFKGINFASCVCNLYIMEF 388
RT+KE+ +LA AGF+G N YIMEF
Sbjct: 211 RTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEF 242
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 203 bits (516), Expect = 4e-64
Identities = 75/274 (27%), Positives = 131/274 (47%), Gaps = 36/274 (13%)
Query: 120 SLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGI 179
L + LD S++ LK + E +
Sbjct: 2 CLAPMVECVLDPTLSGSYH------------------------------ELKKWIYEEDL 31
Query: 180 -PFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGF 238
F G +++ NP +N ++++AM + S + + + F +E +VDVGGG
Sbjct: 32 TLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGT 91
Query: 239 GVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCW 298
G T +I +P++K + FD P VV++ + +VGG+MF S+P DA+L+K+ILH W
Sbjct: 92 GTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNW 151
Query: 299 DDDHCLRILKNCYKAVPGN---GKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGR 355
D CLRILK C +AV + GKV +++ ++ + + + + L+DV + G+
Sbjct: 152 TDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC--LNGK 209
Query: 356 ERTKKEYTELAIAAGFKGINFASCVCNLYIMEFF 389
ER ++E+ +L I AGF+ + L ++E +
Sbjct: 210 ERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 243
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 131 bits (329), Expect = 2e-36
Identities = 56/233 (24%), Positives = 96/233 (41%), Gaps = 17/233 (7%)
Query: 169 GLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNV 228
GL D V G + +G +E S + +++ M +A E + Y+ + V
Sbjct: 24 GLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAV 82
Query: 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGN--------MF 280
++DVGGG G L+ I + P ++ +L + A +
Sbjct: 83 RHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK 142
Query: 281 ESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET 340
D +L+ ++L W D+ L IL+ C +A+ G+++V++ E A R
Sbjct: 143 PLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDG---ADRFF 199
Query: 341 SLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC-----VCNLYIMEF 388
S L L M GGR RT+ E +LA +AG + + + I+EF
Sbjct: 200 STLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEF 252
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 120 bits (303), Expect = 3e-34
Identities = 45/110 (40%), Positives = 60/110 (54%), Gaps = 11/110 (10%)
Query: 19 EEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE----LSAPEIAAQLQA--QN 72
+ E+ + AM L +V P AAI L +FEIIAKA +S EIA++L A Q+
Sbjct: 1 QTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQH 60
Query: 73 VKAPMMLDRMLRLLVSHRVLECSV-----SGGERLYALNPVSKYFVSNKD 117
P LDRMLRLL S+ VL + G ER+Y L+ V KY V ++
Sbjct: 61 SDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDES 110
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 120 bits (303), Expect = 3e-34
Identities = 51/105 (48%), Positives = 66/105 (62%), Gaps = 8/105 (7%)
Query: 20 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKAP 76
+EE+ AMQLA VLPM ++A++L + EIIAKAG +S EIA+QL N AP
Sbjct: 3 SDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAP 62
Query: 77 MMLDRMLRLLVSHRVLECSV-----SGGERLYALNPVSKYFVSNK 116
+MLDRMLRLL + +L CSV +RLY L V+KY V N+
Sbjct: 63 VMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 107
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 120 bits (302), Expect = 1e-32
Identities = 49/211 (23%), Positives = 92/211 (43%), Gaps = 13/211 (6%)
Query: 170 LKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVE 229
L DA+ G + ++G +E +G P ++ + +A + Y+ + NV
Sbjct: 24 LPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVR 82
Query: 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMF--------E 281
++DVGGG G + I + P + A ++ V A SY E + +
Sbjct: 83 HVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP 142
Query: 282 SVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETS 341
+ DAI++ ++L W D +RIL C +A+ G++++ + E
Sbjct: 143 LPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTE-- 200
Query: 342 LLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372
LD+ ++ GG RT++++ LA +AG
Sbjct: 201 -LDLRMLVF-LGGALRTREKWDGLAASAGLV 229
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 83.4 bits (206), Expect = 2e-20
Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 17 EEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVKA 75
+ E ++ + + + M+ + A+++ + II G+ +S + + LQ + K
Sbjct: 2 KPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKI 61
Query: 76 PMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKD 117
+ R++R L + E E YAL S+ V D
Sbjct: 62 GNV-RRLMRYLAHNGFFEIITK-EEESYALTVASELLVRGSD 101
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 68.3 bits (167), Expect = 3e-15
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 27 HAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLL 86
+ + PM + A L + + I G + +AA+ + P L R++R L
Sbjct: 4 RTLIRLGSLHTPMVVRTAATLRLVDHILA-GARTVKALAARTDTR----PEALLRLIRHL 58
Query: 87 VSHRVLECSVSGGERLYALNPVSKYFVSN 115
V+ +LE + V + +
Sbjct: 59 VAIGLLEED---APGEFVPTEVGELLADD 84
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 62.8 bits (153), Expect = 3e-13
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 19 EEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMM 78
E ++ ++ +V PMA + A L + + + AG + +A + P
Sbjct: 2 EPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLL-AGADTLAGLADRTDTH----PQA 56
Query: 79 LDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113
L R++R L VLE G +
Sbjct: 57 LSRLVRHLTVVGVLEGGEKQGRP-LRPTRLGMLLA 90
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 42.6 bits (99), Expect = 3e-05
Identities = 23/155 (14%), Positives = 51/155 (32%), Gaps = 17/155 (10%)
Query: 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV----- 283
R++D+G G G T + + V+ V + +
Sbjct: 18 HRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP 77
Query: 284 ---PEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET 340
D I ++ H + D + ++ + + +G+ ++++ PE P +
Sbjct: 78 FPDDSFDIITCRYAAHHFSDVR--KAVREVARVLKQDGRFLLVDHYAPEDPVLD------ 129
Query: 341 SLLDVLLMTRDGG-GRERTKKEYTELAIAAGFKGI 374
++ L RD RE + E+ + A
Sbjct: 130 EFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQ 164
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 41.5 bits (96), Expect = 6e-05
Identities = 19/164 (11%), Positives = 49/164 (29%), Gaps = 12/164 (7%)
Query: 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEH 274
+ ++++ + E ++DV G G + ++ A + + G H
Sbjct: 4 LAKLMQIA-ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH 62
Query: 275 VGGNMFESVPEGDAILMKWILHCWDDDHCL------RILKNCYKAVPGNGKVIVMNSIVP 328
+ E + + Y+ + G+++++++ P
Sbjct: 63 QQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAP 122
Query: 329 EIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372
E V R K ++ ++ AGF+
Sbjct: 123 ENDAFDVFYNY-----VEKERDYSHHRAWKKSDWLKMLEEAGFE 161
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 390 | |||
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 100.0 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 100.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.84 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.83 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.81 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.79 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.78 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.78 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.77 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.77 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.72 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.71 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.7 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.69 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.67 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.65 | |
| d1fp2a1 | 101 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.62 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.62 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.61 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.6 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.59 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.56 | |
| d1tw3a1 | 85 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.56 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.52 | |
| d1qzza1 | 92 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.51 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.51 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.5 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.47 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.47 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.46 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.46 | |
| d1kyza1 | 107 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.45 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.44 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.41 | |
| d1fp1d1 | 110 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.4 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.36 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.35 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.34 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.31 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.3 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.29 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.28 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.27 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.25 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.25 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.23 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.22 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.21 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.16 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.07 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.07 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.96 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.95 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.92 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.9 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.89 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.82 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.76 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.75 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.73 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.49 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.39 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.35 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.26 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.25 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.24 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.21 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.16 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.16 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.15 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.15 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.14 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.1 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.06 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.05 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.02 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.01 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.99 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.99 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.95 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.91 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.83 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.83 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.81 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 97.76 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.75 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.73 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.72 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.59 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.56 | |
| d1mkma1 | 75 | Transcriptional regulator IclR, N-terminal domain | 97.55 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.53 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.52 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.47 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.36 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 97.3 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.2 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.96 | |
| d1ub9a_ | 100 | Hypothetical protein PH1061 {Archaeon Pyrococcus h | 96.87 | |
| d1u2wa1 | 108 | Cadmium efflux system accessory protein CadC {Stap | 96.61 | |
| d1biaa1 | 63 | Biotin repressor, N-terminal domain {Escherichia c | 96.55 | |
| d1r1ta_ | 98 | SmtB repressor {Cyanobacteria (Synechococcus), pcc | 96.51 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.4 | |
| d1r1ua_ | 94 | Metal-sensing transcriptional repressor CzrA {Stap | 96.4 | |
| d1xd7a_ | 127 | Hypothetical protein ywnA {Bacillus subtilis [TaxI | 96.39 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.28 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.24 | |
| d1z05a1 | 71 | Transcriptional regulator VC2007 N-terminal domain | 96.05 | |
| d1s3ja_ | 143 | Putative transcriptional regulator YusO {Bacillus | 95.87 | |
| d2etha1 | 140 | Putative transcriptional regulator TM0816 {Thermot | 95.81 | |
| d1lvaa3 | 64 | C-terminal fragment of elongation factor SelB {Moo | 95.78 | |
| d1z6ra1 | 70 | Mlc protein N-terminal domain {Escherichia coli [T | 95.73 | |
| d3ctaa1 | 85 | Ta1064 (RFK), N-terminal domain {Thermoplasma acid | 95.72 | |
| d1sfxa_ | 109 | Hypothetical protein AF2008 {Archaeoglobus fulgidu | 95.55 | |
| d2bv6a1 | 136 | Transcriptional regulator MgrA {Staphylococcus aur | 95.43 | |
| d2hoea1 | 62 | N-acetylglucosamine kinase {Thermotoga maritima [T | 95.41 | |
| d2a61a1 | 139 | Transcriptional regulator TM0710 {Thermotoga marit | 95.38 | |
| d1lnwa_ | 141 | MexR repressor {Pseudomonas aeruginosa [TaxId: 287 | 95.25 | |
| d2p4wa1 | 194 | Transcriptional regulatory protein PF1790 {Pyrococ | 95.18 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.08 | |
| d1j5ya1 | 65 | Putative transcriptional regulator TM1602, N-termi | 95.05 | |
| d1jgsa_ | 138 | Multiple antibiotic resistance repressor, MarR {Es | 94.88 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 94.78 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.73 | |
| d1ylfa1 | 138 | Hypothetical protein BC1842 {Bacillus cereus [TaxI | 94.72 | |
| d2fbia1 | 136 | Probable transcriptional regulator PA4135 {Pseudom | 94.63 | |
| d1z91a1 | 137 | Organic hydroperoxide resistance transcriptional r | 94.42 | |
| d1ulya_ | 190 | Hypothetical protein PH1932 {Pyrococcus horikoshii | 94.41 | |
| d3broa1 | 135 | Transcriptional regulator OEOE1854 {Oenococcus oen | 94.4 | |
| d2d1ha1 | 109 | Hypothetical transcriptional regulator ST1889 {Sul | 94.36 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 94.3 | |
| d1lj9a_ | 144 | Transcriptional regulator SlyA {Enterococcus faeca | 94.2 | |
| d2hr3a1 | 145 | Probable transcriptional regulator PA3067 {Pseudom | 94.19 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 94.06 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 93.89 | |
| d2cfxa1 | 63 | Transcriptional regulator LrpC {Bacillus subtilis | 93.84 | |
| d1i1ga1 | 60 | LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 93.79 | |
| d2cg4a1 | 63 | Regulatory protein AsnC {Escherichia coli [TaxId: | 93.78 | |
| d2cyya1 | 60 | Putative transcriptional regulator PH1519 {Archaeo | 93.67 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 93.64 | |
| d2fbha1 | 137 | Transcriptional regulator PA3341 {Pseudomonas aeru | 93.51 | |
| d2fxaa1 | 162 | Protease production regulatory protein Hpr {Bacill | 93.27 | |
| d1hsja1 | 115 | Staphylococcal accessory regulator A homolog, SarR | 93.11 | |
| d1p4xa2 | 125 | Staphylococcal accessory regulator A homolog, SarS | 93.01 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 93.0 | |
| d1r7ja_ | 90 | Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu | 92.98 | |
| d2isya1 | 63 | Iron-dependent regulator IdeR {Mycobacterium tuber | 92.81 | |
| d3deua1 | 140 | Transcriptional regulator SlyA {Salmonella typhimu | 92.65 | |
| d2ev0a1 | 61 | Manganese transport regulator MntR {Bacillus subti | 92.64 | |
| d1ku9a_ | 151 | DNA-binding protein Mj223 {Archaeon Methanococcus | 92.42 | |
| d2hzta1 | 95 | Putative transcriptional regulator YtcD {Bacillus | 92.36 | |
| d1p4xa1 | 125 | Staphylococcal accessory regulator A homolog, SarS | 91.84 | |
| d1jhfa1 | 71 | LexA repressor, N-terminal DNA-binding domain {Esc | 91.82 | |
| d1z7ua1 | 108 | Hypothetical protein EF0647 {Enterococcus faecalis | 91.79 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 91.73 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 91.52 | |
| d2fswa1 | 102 | Hypothetical protein PG0823 {Porphyromonas gingiva | 91.49 | |
| d1yyva1 | 114 | Putative transcriptional regulator YtfH {Salmonell | 91.36 | |
| d2fbka1 | 172 | Transcriptional regulator DR1159 {Deinococcus radi | 91.01 | |
| d2f2ea1 | 142 | Hypothetical protein PA1607 {Pseudomonas aeruginos | 90.85 | |
| d2frha1 | 115 | Pleiotropic regulator of virulence genes, SarA {St | 90.76 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 90.49 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 90.49 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 89.99 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 89.73 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 88.26 | |
| d1xmka1 | 73 | Z-alpha domain of dsRNA-specific adenosine deamina | 87.18 | |
| d2gxba1 | 59 | Z-alpha domain of dsRNA-specific adenosine deamina | 87.04 | |
| d1okra_ | 120 | Methicillin resistance regulatory protein MecI {St | 86.85 | |
| d1dpua_ | 69 | C-terminal domain of RPA32 {Human (Homo sapiens) [ | 86.5 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 86.47 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 86.35 | |
| d1zyba1 | 73 | Probable transcription regulator BT4300, C-termina | 85.33 | |
| d1j75a_ | 57 | Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | 82.87 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 82.39 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 82.01 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 81.95 | |
| d1sfua_ | 70 | 34L {Yaba-like disease virus, YLDV [TaxId: 132475] | 81.51 | |
| d1q1ha_ | 88 | Transcription factor E/IIe-alpha, N-terminal domai | 81.49 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 81.11 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 80.76 | |
| d1i5za1 | 69 | Catabolite gene activator protein (CAP), C-termina | 80.01 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=8.4e-44 Score=321.73 Aligned_cols=241 Identities=41% Similarity=0.789 Sum_probs=209.4
Q ss_pred CChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCC-chhhhhcCCChhhhcccCc
Q 016366 119 ASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGG-IPFNRVHGMHIFEYASGNP 197 (390)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~ 197 (390)
.|++.++.+++.|.+++.|. +|.+++++|+ ++|+..+|.++|+|+.++|
T Consensus 2 g~l~~~~~~~~~p~~~~~w~------------------------------~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p 51 (244)
T d1fp1d2 2 GYLASFTTFLCYPALLQVWM------------------------------NFKEAVVDEDIDLFKNVHGVTKYEFMGKDK 51 (244)
T ss_dssp CCCTHHHHHHTCHHHHHHHT------------------------------THHHHHHSCC--------------CCSSCH
T ss_pred ccHHHHHHHHhCHHHHHHHH------------------------------HHHHHHhcCCCCHhHHhcCCCHHHHHhhCH
Confidence 36888999988999999997 9999999876 5799999999999999999
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEEC
Q 016366 198 RFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGG 277 (390)
Q Consensus 198 ~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~g 277 (390)
+..+.|+++|...+....+.+++.++.+++..+|||||||+|.++.++++++|+++++++|+|.+++.+...+||+++.+
T Consensus 52 ~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~g 131 (244)
T d1fp1d2 52 KMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGG 131 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecC
Confidence 99999999999999988899999998678889999999999999999999999999999999999999998999999999
Q ss_pred CCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCccc
Q 016366 278 NMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRER 357 (390)
Q Consensus 278 d~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~ 357 (390)
|+++++|.+|+|++.++||+|+|+++.++|++++++|+|||+++|+|.+.++.+...........+|+.|+..+ +|++|
T Consensus 132 d~~~~~p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~-~g~er 210 (244)
T d1fp1d2 132 DMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRER 210 (244)
T ss_dssp CTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCE
T ss_pred CcccccccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhC-CCcCC
Confidence 99999998899999999999999999999999999999999999999998876655444455677888888766 89999
Q ss_pred CHHHHHHHHHHCCCCeeEEEec-CCceeEEEEeC
Q 016366 358 TKKEYTELAIAAGFKGINFASC-VCNLYIMEFFK 390 (390)
Q Consensus 358 t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~k 390 (390)
|.+||+++|++|||+.+++++. .+..+|||++|
T Consensus 211 t~~e~~~ll~~AGF~~v~v~~~~~~~~~viE~~K 244 (244)
T d1fp1d2 211 TEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 244 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred CHHHHHHHHHHcCCCceEEEecCCCCEEEEEEeC
Confidence 9999999999999999999755 48889999998
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=3.5e-42 Score=311.85 Aligned_cols=241 Identities=54% Similarity=1.022 Sum_probs=220.9
Q ss_pred CChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCCchhhhhcCCChhhhcccCch
Q 016366 119 ASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYASGNPR 198 (390)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~ 198 (390)
.++++++.+.+++.+++.|. +|.+++|+|+++|+..+|.++|+|+.++|+
T Consensus 3 ~s~~~~~~~~~~~~~~~~W~------------------------------~L~~avrtG~~~f~~~~G~~~~~~~~~~p~ 52 (243)
T d1kyza2 3 VSISALNLMNQDKVLMESWY------------------------------HLKDAVLDGGIPFNKAYGMTAFEYHGTDPR 52 (243)
T ss_dssp CCTHHHHHHHTSHHHHGGGG------------------------------GHHHHHHHCSCHHHHHHSSCHHHHGGGCHH
T ss_pred CcHHHHHHHhcCHHHHHHHH------------------------------HHHHHHhhCCCHHHhhcCCCHHHHHHhCHH
Confidence 46888998888888889997 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECC
Q 016366 199 FNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGN 278 (390)
Q Consensus 199 ~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd 278 (390)
..+.|+++|...+....+.+++.++.+++..+|||||||+|.++.++++++|+++++++|+|.+++.++..+|++++.+|
T Consensus 53 ~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d 132 (243)
T d1kyza2 53 FNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGD 132 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECC
T ss_pred HHHHHHHHHhHhhhhHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEeccc
Confidence 99999999999988888889998884466789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccC
Q 016366 279 MFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERT 358 (390)
Q Consensus 279 ~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t 358 (390)
+++++|.+|++++.+++|+|+++++.++|++++++|+|||+++|.|.+.++.............+|+.|+.++.+|++||
T Consensus 133 ~~~~~P~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert 212 (243)
T d1kyza2 133 MFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERT 212 (243)
T ss_dssp TTTCCCCCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEE
T ss_pred ccccCCCcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCC
Confidence 99999988999999999999999999999999999999999999999987765444444455678999988777899999
Q ss_pred HHHHHHHHHHCCCCeeEEEecCCceeEEEEe
Q 016366 359 KKEYTELAIAAGFKGINFASCVCNLYIMEFF 389 (390)
Q Consensus 359 ~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 389 (390)
.+||+++|++|||+.+++++.....+|||.+
T Consensus 213 ~~e~~~ll~~AGf~~vkv~~~~~~~~viE~~ 243 (243)
T d1kyza2 213 QKEFEDLAKGAGFQGFKVHCNAFNTYIMEFL 243 (243)
T ss_dssp HHHHHHHHHHHCCSCEEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHcCCCcEEEEEeCCCCEEEEeC
Confidence 9999999999999999999999999999964
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=7.1e-41 Score=302.64 Aligned_cols=238 Identities=32% Similarity=0.592 Sum_probs=210.7
Q ss_pred hHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCC-chhhhhcCCChhhhcccCchH
Q 016366 121 LGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGG-IPFNRVHGMHIFEYASGNPRF 199 (390)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~ 199 (390)
+..++.+..+|.++..|. .|.+++++|. ++|+..+|.++|+|+.++|+.
T Consensus 3 ~ap~~~~~~~p~~~~~w~------------------------------~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~ 52 (244)
T d1fp2a2 3 LAPMVECVLDPTLSGSYH------------------------------ELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEY 52 (244)
T ss_dssp CHHHHHHHTCHHHHHGGG------------------------------GHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHH
T ss_pred hHHHHHHHhCHHHHHHHH------------------------------HHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHH
Confidence 456667777787777776 8999999885 589999999999999999999
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCC
Q 016366 200 NETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNM 279 (390)
Q Consensus 200 ~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~ 279 (390)
.+.|+++|...+......+.+....+++..+|||||||+|.++..+++++|+++++++|+|.+++.+...+||+++.+|+
T Consensus 53 ~~~F~~aM~~~s~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~ 132 (244)
T d1fp2a2 53 NTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDM 132 (244)
T ss_dssp HHHHHHHHHHTHHHHHHHHHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCT
T ss_pred HHHHHHHhhhhhhhhhhhHhhhcccccCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCc
Confidence 99999999999887666665543226788899999999999999999999999999999999999999889999999999
Q ss_pred CCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCC---cEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcc
Q 016366 280 FESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGN---GKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE 356 (390)
Q Consensus 280 ~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pg---G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 356 (390)
++++|.+|+|+++++||+|+|+++.++|++++++|+|| |+++|+|.+.++.+...........+|+.|+. + +|++
T Consensus 133 f~~~p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~-~G~e 210 (244)
T d1fp2a2 133 FTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKE 210 (244)
T ss_dssp TTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCC
T ss_pred ccCCCCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-C-CCcC
Confidence 99888789999999999999999999999999999998 89999999998866554444445567887775 3 7999
Q ss_pred cCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 357 RTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 357 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
||.+||+++|++|||+.+++++.++..+|||+|+
T Consensus 211 rt~~e~~~ll~~AGf~~~~i~~~~~~~svIE~~p 244 (244)
T d1fp2a2 211 RNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 244 (244)
T ss_dssp EEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHHcCCceEEEEECCCCeEEEEEeC
Confidence 9999999999999999999999999999999986
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=100.00 E-value=5.9e-38 Score=286.35 Aligned_cols=219 Identities=26% Similarity=0.440 Sum_probs=193.1
Q ss_pred ccchhhhHhcCCchhhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHH
Q 016366 167 RLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMIT 246 (390)
Q Consensus 167 ~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~ 246 (390)
|..|.+++|+|.++|+..+|.++|+|++++|+..+.|+++|...+....+.+++.++ +++..+|||||||+|.++..++
T Consensus 22 ~~~L~~~~rtG~~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~vlDvG~G~G~~~~~l~ 100 (256)
T d1qzza2 22 FTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIA 100 (256)
T ss_dssp GGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHH
T ss_pred HHHHHHHHHhCCchhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-CccCCEEEEECCCCCHHHHHHH
Confidence 349999999999999999999999999999999999999999998888889999998 9999999999999999999999
Q ss_pred hhCCCCeEEEecchHHHhhCCC-------CCCceEEECCCCCCCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCc
Q 016366 247 SKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNG 318 (390)
Q Consensus 247 ~~~p~~~~~~~Dl~~~~~~a~~-------~~rv~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG 318 (390)
+++|+++++++|+|++++.+++ .+|++++.+|+++++|.+ |+|++.++||+|+++++.++|++++++|||||
T Consensus 101 ~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG 180 (256)
T d1qzza2 101 LRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGG 180 (256)
T ss_dssp HHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred HhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccccccCcHHHHHHHHHHHhhcCCcc
Confidence 9999999999999998887764 378999999999988876 99999999999999999999999999999999
Q ss_pred EEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecC-----CceeEEEEe
Q 016366 319 KVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV-----CNLYIMEFF 389 (390)
Q Consensus 319 ~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~-----~~~~vi~~~ 389 (390)
+++|+|.+.++.... .......+|+.|+..+ +|+.||.++|+++|+++||+++++.+.+ ..++|+|+.
T Consensus 181 ~llI~d~~~~~~~~~--~~~~~~~~d~~ml~~~-~g~~rt~~e~~~ll~~AGf~~~~~~~~~~~~~~~~~~v~E~~ 253 (256)
T d1qzza2 181 RLLVLDRADVEGDGA--DRFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFT 253 (256)
T ss_dssp EEEEEECCH---------HHHHHHHHHHHHHHH-SCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEE
T ss_pred eeEEEEeccCCCCcc--cHHHHHHHHHHHHhhC-CCccCCHHHHHHHHHHCCCceeEEEEeCCcCccCceEEEEEE
Confidence 999999876553322 2234567788888876 8999999999999999999999998765 356899875
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=100.00 E-value=1.9e-36 Score=276.07 Aligned_cols=219 Identities=24% Similarity=0.447 Sum_probs=191.6
Q ss_pred hccchhhhHhcCCchhhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHH
Q 016366 166 CRLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMI 245 (390)
Q Consensus 166 ~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l 245 (390)
+|.+|.+++|+|+++++..+|.++|+|+.++|+..+.|+.+|...+....+.+++.++ +++..+|||||||+|.++..+
T Consensus 20 ~~~~L~~~vr~G~~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~~~~l 98 (253)
T d1tw3a2 20 SFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAI 98 (253)
T ss_dssp GGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHH
T ss_pred cHHHHHHHHHhCCchhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-CccCCEEEEeCCCCCHHHHHH
Confidence 3459999999999999999999999999999999999999999999888889999998 999999999999999999999
Q ss_pred HhhCCCCeEEEecchHHHhhCCC-------CCCceEEECCCCCCCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCC
Q 016366 246 TSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGN 317 (390)
Q Consensus 246 ~~~~p~~~~~~~Dl~~~~~~a~~-------~~rv~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pg 317 (390)
++++|+++++++|+|.+++.+++ .+||+++.+|++++.|.. |+|+++++||+|+++++.++|++++++||||
T Consensus 99 a~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPG 178 (253)
T d1tw3a2 99 ARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG 178 (253)
T ss_dssp HHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE
T ss_pred HHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHhcCCC
Confidence 99999999999999888887765 268999999999877665 9999999999999999999999999999999
Q ss_pred cEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCC-----ceeEEEEe
Q 016366 318 GKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVC-----NLYIMEFF 389 (390)
Q Consensus 318 G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~-----~~~vi~~~ 389 (390)
|+++|.|...++..... .....+|+.|+..+ +|++||.++|+++|+++||+++++..+++ ...++++.
T Consensus 179 G~l~i~e~~~~~~~~~~---~~~~~~dl~~~~~~-~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p~~~~~~~li~~~ 251 (253)
T d1tw3a2 179 GRILIHERDDLHENSFN---EQFTELDLRMLVFL-GGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLA 251 (253)
T ss_dssp EEEEEEECCBCGGGCCS---HHHHHHHHHHHHHH-SCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEE
T ss_pred cEEEEEeccCCCCCcch---hHHHHhhHHHHhhC-CCcCCCHHHHHHHHHHCCCeEEEEEECCCCCCCccEEEEEEe
Confidence 99999998765533221 23456788888776 89999999999999999999999887653 23455543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.84 E-value=2.8e-20 Score=165.19 Aligned_cols=164 Identities=13% Similarity=0.146 Sum_probs=122.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhh--CCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCCcEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSK--YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~--~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~D~i~~~~v 294 (390)
++..+|||||||+|..+..+++. .|+.+++++|+ +.|++.|++. .++.+..+|+.+ +.+..|+|++.++
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~ 117 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 117 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESC
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeee
Confidence 56789999999999999999986 48899999999 8999998752 467888889876 5545599999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhh-hc------------CCCcccCHHH
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT-RD------------GGGRERTKKE 361 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~------------~~g~~~t~~e 361 (390)
+|+++.++..++|++++++|+|||.+++.|...++.+...... ......+.... .. ..-..++.++
T Consensus 118 l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 196 (225)
T d1im8a_ 118 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLL-IDLHHQFKRANGYSELEVSQKRTALENVMRTDSIET 196 (225)
T ss_dssp GGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHH-HHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHHH
T ss_pred ccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHH-HHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHHH
Confidence 9999988888999999999999999999998876653211100 00000000000 00 0013468899
Q ss_pred HHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 362 YTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 362 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
+.++|+++||+.++++.....+..+.++|
T Consensus 197 ~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 197 HKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp HHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 99999999999999876655566666665
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.83 E-value=2.6e-20 Score=165.69 Aligned_cols=153 Identities=16% Similarity=0.272 Sum_probs=117.3
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCC-CCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~~p~~- 286 (390)
..+++..+ +++..+|||||||+|.++..++++.+ +++++|+ +.+++.|++ .++++++++|+.+ +++.+
T Consensus 5 ~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~ 81 (231)
T d1vl5a_ 5 AKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER 81 (231)
T ss_dssp HHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence 35666666 88889999999999999999998864 6788887 888888764 3789999999998 77765
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
|+|++.+++||++|.+ ++|++++++|+|||+++|.+...+... ........... .........++.++|.++
T Consensus 82 fD~v~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 154 (231)
T d1vl5a_ 82 FHIVTCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVDNSAPEND---AFDVFYNYVEK--ERDYSHHRAWKKSDWLKM 154 (231)
T ss_dssp EEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEBCSSH---HHHHHHHHHHH--HHCTTCCCCCBHHHHHHH
T ss_pred cccccccccccccCCHH--HHHHHHHHhcCCCcEEEEEeCCCCCCH---HHHHHHHHHHh--hcccCcccCCCHHHHHHH
Confidence 9999999999999876 889999999999999999988765532 11111111111 111123456789999999
Q ss_pred HHHCCCCeeEEEe
Q 016366 366 AIAAGFKGINFAS 378 (390)
Q Consensus 366 l~~aGf~~~~~~~ 378 (390)
|+++||+++++..
T Consensus 155 l~~aGf~~~~~~~ 167 (231)
T d1vl5a_ 155 LEEAGFELEELHC 167 (231)
T ss_dssp HHHHTCEEEEEEE
T ss_pred HHHCCCEEEEEEE
Confidence 9999999887654
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.81 E-value=1.1e-19 Score=166.88 Aligned_cols=156 Identities=15% Similarity=0.226 Sum_probs=121.2
Q ss_pred HHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-C
Q 016366 212 TIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S 282 (390)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~ 282 (390)
...+..+....+ +++..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++. ++|+++++|+.+ +
T Consensus 53 ~~~~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~ 130 (282)
T d2o57a1 53 EWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 130 (282)
T ss_dssp HHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred HHHHHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccccccccccccccccccc
Confidence 334445555545 7888999999999999999999876 578999998 8888887752 689999999998 7
Q ss_pred CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHH
Q 016366 283 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKK 360 (390)
Q Consensus 283 ~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~ 360 (390)
++.+ |+|++..++||+++.. ++|++++++|||||++++.+....+...... .....+... .....+.+
T Consensus 131 ~~~~sfD~V~~~~~l~h~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~s~~ 200 (282)
T d2o57a1 131 CEDNSYDFIWSQDAFLHSPDKL--KVFQECARVLKPRGVMAITDPMKEDGIDKSS---IQPILDRIK-----LHDMGSLG 200 (282)
T ss_dssp SCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEECTTCCGGG---GHHHHHHHT-----CSSCCCHH
T ss_pred ccccccchhhccchhhhccCHH--HHHHHHHHhcCCCcEEEEEEeecCCCCchhH---HHHHHHHhc-----cCCCCCHH
Confidence 7765 9999999999999866 8999999999999999999988765432211 111111111 23346889
Q ss_pred HHHHHHHHCCCCeeEEEec
Q 016366 361 EYTELAIAAGFKGINFASC 379 (390)
Q Consensus 361 e~~~ll~~aGf~~~~~~~~ 379 (390)
+|.++++++||+.+.+...
T Consensus 201 ~~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 201 LYRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp HHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHcCCceEEEEEC
Confidence 9999999999998887754
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.79 E-value=3.1e-19 Score=159.28 Aligned_cols=151 Identities=17% Similarity=0.319 Sum_probs=118.0
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC--
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG-- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~-- 286 (390)
-+++..+ ++++.||||||||+|.++..++++.+ +++++|+ +.+++.|+++ +++.++++|+.+ +++.+
T Consensus 7 ~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 83 (234)
T d1xxla_ 7 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF 83 (234)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred HHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhccccccccccccccccccccccccc
Confidence 3556667 88999999999999999999999874 6788998 8888887753 689999999988 77765
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhh-hhhhhcCCCcccCHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDV-LLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~g~~~t~~e~~~l 365 (390)
|+|++.+++||+++.. ++|++++++|+|||++++.+...++.+ .... +++. .........+..+..+|..+
T Consensus 84 D~v~~~~~l~~~~d~~--~~l~~~~r~LkpgG~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (234)
T d1xxla_ 84 DIITCRYAAHHFSDVR--KAVREVARVLKQDGRFLLVDHYAPEDP---VLDE---FVNHLNRLRDPSHVRESSLSEWQAM 155 (234)
T ss_dssp EEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECBCSSH---HHHH---HHHHHHHHHCTTCCCCCBHHHHHHH
T ss_pred ceeeeeceeecccCHH--HHHHHHHHeeCCCcEEEEEEcCCCCCH---HHHH---HHHHHHhhCCCcccccCCHHHHHHH
Confidence 9999999999998865 899999999999999999988765532 1111 1111 11111124566789999999
Q ss_pred HHHCCCCeeEEEe
Q 016366 366 AIAAGFKGINFAS 378 (390)
Q Consensus 366 l~~aGf~~~~~~~ 378 (390)
++++||.+..+..
T Consensus 156 ~~~~gf~~~~~~~ 168 (234)
T d1xxla_ 156 FSANQLAYQDIQK 168 (234)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHCCCceeEEEE
Confidence 9999998776543
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.5e-19 Score=160.16 Aligned_cols=140 Identities=16% Similarity=0.229 Sum_probs=114.0
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC--cEEEeccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKWI 294 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~--D~i~~~~v 294 (390)
..+..+|||||||+|.++..++++.+. +++++|+ +.+++.|++. ++++++++|+++ +++.. |+|++.++
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCC-EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 456789999999999999999877753 7888998 8899887752 468999999988 65544 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCee
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 374 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 374 (390)
+||+++++..++|+++++.|+|||.+++.+....+... .+ .......++.++|+++|+++||+++
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~----------~~-----~~~~~~~~~~~~~~~l~~~aGf~ii 201 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI----------LD-----DVDSSVCRDLDVVRRIICSAGLSLL 201 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE----------EE-----TTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred cccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc----------cc-----cCCceeeCCHHHHHHHHHHcCCEEE
Confidence 99999998889999999999999999999987655311 00 0113455789999999999999999
Q ss_pred EEEecC
Q 016366 375 NFASCV 380 (390)
Q Consensus 375 ~~~~~~ 380 (390)
+.....
T Consensus 202 ~~~~q~ 207 (222)
T d2ex4a1 202 AEERQE 207 (222)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 877643
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.78 E-value=2.2e-19 Score=162.25 Aligned_cols=147 Identities=18% Similarity=0.288 Sum_probs=116.8
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCC-CCCCC--cE
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEG--DA 288 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~-~~p~~--D~ 288 (390)
.+++.++ ..+..+|||+|||+|.++..++.++.+ +++++|. +.+++.|++ .++++++++|+.+ +++.. |+
T Consensus 84 ~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 161 (254)
T d1xtpa_ 84 NFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDL 161 (254)
T ss_dssp HHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEE
T ss_pred HHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccce
Confidence 4556666 567789999999999999998887654 6788887 888888875 2568999999987 55543 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHH
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 368 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~ 368 (390)
|++.+++||+++++..++|++++++|+|||+++|.+.+...... ..+. ......|+.++|+++|++
T Consensus 162 I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~---------~~d~-----~d~~~~rs~~~~~~l~~~ 227 (254)
T d1xtpa_ 162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVDK-----EDSSLTRSDIHYKRLFNE 227 (254)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEET-----TTTEEEBCHHHHHHHHHH
T ss_pred EEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcc---------eecc-----cCCceeCCHHHHHHHHHH
Confidence 99999999999999899999999999999999999987554211 1110 123456899999999999
Q ss_pred CCCCeeEEEec
Q 016366 369 AGFKGINFASC 379 (390)
Q Consensus 369 aGf~~~~~~~~ 379 (390)
+||++++...-
T Consensus 228 aGf~ii~~~~q 238 (254)
T d1xtpa_ 228 SGVRVVKEAFQ 238 (254)
T ss_dssp HTCCEEEEEEC
T ss_pred cCCEEEEEEee
Confidence 99999887653
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.5e-18 Score=155.96 Aligned_cols=153 Identities=10% Similarity=0.064 Sum_probs=118.6
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~ 286 (390)
...+.+.+. +.++.+|||||||+|.++..++++++ .+++++|+ +.+++.+++. ++|+++.+|+.+..+..
T Consensus 22 ~~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~ 99 (245)
T d1nkva_ 22 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 99 (245)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence 345666666 78889999999999999999998875 78999998 8888877652 57999999998854443
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHH
Q 016366 287 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 364 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ 364 (390)
|+|++..++||+++.. ++|++++++|||||++++.++.....+..... ..... ........+..++.+
T Consensus 100 ~fD~v~~~~~~~~~~d~~--~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~ 169 (245)
T d1nkva_ 100 KCDVAACVGATWIAGGFA--GAEELLAQSLKPGGIMLIGEPYWRQLPATEEI---AQACG-----VSSTSDFLTLPGLVG 169 (245)
T ss_dssp CEEEEEEESCGGGTSSSH--HHHHHHTTSEEEEEEEEEEEEEETTCCSSHHH---HHTTT-----CSCGGGSCCHHHHHH
T ss_pred ceeEEEEEehhhccCCHH--HHHHHHHHHcCcCcEEEEEeccccCCCChHHH---HHHhc-----cCCCcccCCHHHHHH
Confidence 9999999999999866 89999999999999999998876554322111 11110 011234568999999
Q ss_pred HHHHCCCCeeEEEec
Q 016366 365 LAIAAGFKGINFASC 379 (390)
Q Consensus 365 ll~~aGf~~~~~~~~ 379 (390)
+++++||.++.....
T Consensus 170 ~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 170 AFDDLGYDVVEMVLA 184 (245)
T ss_dssp HHHTTTBCCCEEEEC
T ss_pred HHHHcCCEEEEEEeC
Confidence 999999998876544
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=2.1e-18 Score=150.85 Aligned_cols=138 Identities=21% Similarity=0.174 Sum_probs=104.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCC--cEEEeccccccCChh
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDD 301 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~ 301 (390)
.+..+|||||||+|.++..+.+ .+++|+ +.+++.++++ +++++++|+.+ +++.. |+|++.++|||+++.
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~~------~~giD~s~~~~~~a~~~-~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~ 107 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLKI------KIGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP 107 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHTC------CEEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH
T ss_pred CCCCeEEEECCCCcccccccce------EEEEeCChhhccccccc-cccccccccccccccccccccccccccccccccc
Confidence 3456899999999999888753 467887 8899988864 69999999988 77654 999999999999886
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEe
Q 016366 302 HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 378 (390)
Q Consensus 302 ~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 378 (390)
. ++|++++++|+|||++++.++...+ ..... ............+...+|.+++.++|+++||+++++..
T Consensus 108 ~--~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 108 E--RALKEAYRILKKGGYLIVGIVDRES-----FLGRE-YEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp H--HHHHHHHHHEEEEEEEEEEEECSSS-----HHHHH-HHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred c--cchhhhhhcCCCCceEEEEecCCcc-----hhHHh-hhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 5 8999999999999999998875432 11000 00111111111245568999999999999999888764
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.72 E-value=3.9e-17 Score=149.07 Aligned_cols=164 Identities=15% Similarity=0.241 Sum_probs=123.9
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPEG 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~p~~ 286 (390)
...+++.+. ++++.+|||||||+|.++..++++++ ++++++|+ +..++.+++ ..++.+...|..+.....
T Consensus 41 ~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~f 118 (280)
T d2fk8a1 41 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 118 (280)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccch
Confidence 356777777 88899999999999999999888875 69999998 667776654 246777777765432233
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCc-----chHHhhhhhhhhhhhhhcCCCcccCHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEV-----SSAARETSLLDVLLMTRDGGGRERTKKE 361 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~g~~~t~~e 361 (390)
|.|++..+++|+++.....+|++++++|||||+++|.+.+..+.... ..........++..-..+|+|..++.++
T Consensus 119 D~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~ 198 (280)
T d2fk8a1 119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEM 198 (280)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred hhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHh
Confidence 99999999999998877899999999999999999988665442110 0011112223444444567999999999
Q ss_pred HHHHHHHCCCCeeEEEecC
Q 016366 362 YTELAIAAGFKGINFASCV 380 (390)
Q Consensus 362 ~~~ll~~aGf~~~~~~~~~ 380 (390)
+.+.++++||.+.++...+
T Consensus 199 l~~~~e~aGf~v~~~~~~~ 217 (280)
T d2fk8a1 199 MVEHGEKAGFTVPEPLSLR 217 (280)
T ss_dssp HHHHHHHTTCBCCCCEECH
T ss_pred hhhhHHhhccccceeeecc
Confidence 9999999999999887653
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=9.7e-17 Score=146.46 Aligned_cols=164 Identities=17% Similarity=0.185 Sum_probs=124.6
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPEG 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~p~~ 286 (390)
...+++.+. ++++.+|||||||.|.++..+++++ +++++++++ +..++.+++ .+++++..+|+.+.-...
T Consensus 51 ~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f 128 (285)
T d1kpga_ 51 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 128 (285)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence 356777777 8899999999999999999999998 489999998 555555543 268999999986422234
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCC-----cchHHhhhhhhhhhhhhhcCCCcccCHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPE-----VSSAARETSLLDVLLMTRDGGGRERTKKE 361 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~g~~~t~~e 361 (390)
|.|++...+.|+.......++++++++|+|||++++.+.+...... ...........++..-..+++|..++.++
T Consensus 129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~ 208 (285)
T d1kpga_ 129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM 208 (285)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred cceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhh
Confidence 9999999999998776678999999999999999998877433110 00011112223333344467999999999
Q ss_pred HHHHHHHCCCCeeEEEecC
Q 016366 362 YTELAIAAGFKGINFASCV 380 (390)
Q Consensus 362 ~~~ll~~aGf~~~~~~~~~ 380 (390)
+.++++++||++.++..+.
T Consensus 209 ~~~~~e~agf~v~~~~~~~ 227 (285)
T d1kpga_ 209 VQECASANGFTVTRVQSLQ 227 (285)
T ss_dssp HHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHhchhhcccccch
Confidence 9999999999999987764
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.70 E-value=4.2e-17 Score=149.30 Aligned_cols=162 Identities=16% Similarity=0.185 Sum_probs=112.8
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~- 286 (390)
..+++.+..+.++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.|++. .+++|+++|+.+ +++..
T Consensus 16 ~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~f 95 (281)
T d2gh1a1 16 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKY 95 (281)
T ss_dssp HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCE
T ss_pred HHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCc
Confidence 445554443667889999999999999999998874 78999998 8888888753 368999999988 66655
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC-------CCCc-chHHhhhhhhhhhhhhhcCCCccc-
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE-------IPEV-SSAARETSLLDVLLMTRDGGGRER- 357 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~-------~~~~-~~~~~~~~~~d~~~~~~~~~g~~~- 357 (390)
|+|++.+++||++++. ++|++++++|||||++++.|+.... .... ........+...........+...
T Consensus 96 D~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (281)
T d2gh1a1 96 DIAICHAFLLHMTTPE--TMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGN 173 (281)
T ss_dssp EEEEEESCGGGCSSHH--HHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTT
T ss_pred eEEEEehhhhcCCCHH--HHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999876 8999999999999999998864211 0000 000001111111111100122222
Q ss_pred CHHHHHHHHHHCCCCeeEEEec
Q 016366 358 TKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 358 t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
...++..+++++||+.+++...
T Consensus 174 i~~~l~~~l~eaGf~~i~~~~~ 195 (281)
T d2gh1a1 174 IGMKIPIYLSELGVKNIECRVS 195 (281)
T ss_dssp GGGTHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHcCCeEEEEEEe
Confidence 2246778999999999877544
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.69 E-value=1e-16 Score=146.72 Aligned_cols=165 Identities=16% Similarity=0.233 Sum_probs=123.9
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPEG 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~p~~ 286 (390)
...+++.+. ++++.+|||||||.|.++..++++++ ++++++++ +..++.+++ ..++++...|+..+-...
T Consensus 50 ~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~f 127 (291)
T d1kpia_ 50 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 127 (291)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccccc
Confidence 356777777 88999999999999999999999886 68999998 555555543 257888888875322234
Q ss_pred cEEEeccccccCCh-------hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcch-----HHhhhhhhhhhhhhhcCCC
Q 016366 287 DAILMKWILHCWDD-------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSS-----AARETSLLDVLLMTRDGGG 354 (390)
Q Consensus 287 D~i~~~~vlh~~~d-------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~g 354 (390)
|.|++...+.|+++ +.-..++++|+++|||||++++.+.+.++...... ........++.....+++|
T Consensus 128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg 207 (291)
T d1kpia_ 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG 207 (291)
T ss_dssp SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCC
Confidence 99999999999986 34568999999999999999999988765321100 0011122233333346799
Q ss_pred cccCHHHHHHHHHHCCCCeeEEEecCC
Q 016366 355 RERTKKEYTELAIAAGFKGINFASCVC 381 (390)
Q Consensus 355 ~~~t~~e~~~ll~~aGf~~~~~~~~~~ 381 (390)
..++.+++...++++||++..+...+.
T Consensus 208 ~lps~~~~~~~~e~~gl~v~~~~~~~~ 234 (291)
T d1kpia_ 208 RLPRISQVDYYSSNAGWKVERYHRIGA 234 (291)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCHHHHHhhhcccccccceeeeccc
Confidence 999999999999999999998887753
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.67 E-value=2.1e-16 Score=139.78 Aligned_cols=144 Identities=14% Similarity=0.178 Sum_probs=105.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--CCceEEECCCCC-CCCCC-cEEEeccccccCC
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPEG-DAILMKWILHCWD 299 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~~ 299 (390)
+.++.+|||||||+|.++..++++.. +++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.++|||++
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 95 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecC
Confidence 44677999999999999999998865 4778887 8899988753 579999999887 45444 9999999999999
Q ss_pred hhHHHHHHHHHH-HhCCCCcEEEEEecccCCCCCcchHHhhhhhhhh--------hhhhhcCCCcccCHHHHHHHHHHCC
Q 016366 300 DDHCLRILKNCY-KAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDV--------LLMTRDGGGRERTKKEYTELAIAAG 370 (390)
Q Consensus 300 d~~~~~~L~~~~-~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~--------~~~~~~~~g~~~t~~e~~~ll~~aG 370 (390)
++. ++|++++ ++|+|||.+++..+-... ........+.. ..-......+.++.++++++++++|
T Consensus 96 d~~--~~l~~i~~~~Lk~gG~l~i~~pn~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~G 168 (225)
T d2p7ia1 96 DPV--ALLKRINDDWLAEGGRLFLVCPNANA-----VSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAG 168 (225)
T ss_dssp SHH--HHHHHHHHTTEEEEEEEEEEEECTTC-----HHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTT
T ss_pred CHH--HHHHHHHHHhcCCCceEEEEeCCccc-----HHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCC
Confidence 876 8899998 789999999987543211 00000000000 0000112345678999999999999
Q ss_pred CCeeEEE
Q 016366 371 FKGINFA 377 (390)
Q Consensus 371 f~~~~~~ 377 (390)
|++++..
T Consensus 169 f~i~~~~ 175 (225)
T d2p7ia1 169 LQVTYRS 175 (225)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9988754
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.65 E-value=1.5e-16 Score=142.88 Aligned_cols=106 Identities=20% Similarity=0.329 Sum_probs=88.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC-c
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-D 287 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-D 287 (390)
..+.+.+. ..+..+|||||||+|.++..++++. .+++++|+ +.|++.|++. .+++++++|+.+ +++.. |
T Consensus 31 ~~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD 107 (251)
T d1wzna1 31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD 107 (251)
T ss_dssp HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred HHHHHHhc-CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccccccchheehhhhhcccccccc
Confidence 34455555 5667899999999999999999875 47888898 8899988863 479999999988 77655 9
Q ss_pred EEEec-cccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 288 AILMK-WILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 288 ~i~~~-~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+|++. +++++++.++..++|++++++|+|||++++..
T Consensus 108 ~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 99886 68888887888899999999999999998744
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.62 E-value=2e-16 Score=120.66 Aligned_cols=94 Identities=18% Similarity=0.209 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCC
Q 016366 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (390)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~ 99 (390)
..+++..|++++.||+.+++|++|+++||||.|.++ ||+|++|||+++++ ++.+++.|.|+||+|++.|++.+.. +.
T Consensus 6 ~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~~p~t~~eLa~~~~~-~~~~~~~L~RlLR~L~~~gi~~~~~-~~ 83 (101)
T d1fp2a1 6 IFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIIT-KE 83 (101)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcCCCCCHHHHHHHcCC-CCccchHHHHHHHHHHhCCceeeec-CC
Confidence 345777999999999999999999999999999864 59999999999998 2224466999999999999997532 35
Q ss_pred CcceecCccccccccCC
Q 016366 100 ERLYALNPVSKYFVSNK 116 (390)
Q Consensus 100 ~~~y~~t~~s~~l~~~~ 116 (390)
+++|++|+.|+.|+.+.
T Consensus 84 ~~~Y~lt~~s~~Lv~~~ 100 (101)
T d1fp2a1 84 EESYALTVASELLVRGS 100 (101)
T ss_dssp SEEEEECHHHHTTSTTS
T ss_pred CCeEecCHHHHHhhcCC
Confidence 67899999999777653
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.62 E-value=7.4e-16 Score=135.63 Aligned_cols=99 Identities=16% Similarity=0.285 Sum_probs=85.9
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC--cEEEeccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKWILH 296 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~--D~i~~~~vlh 296 (390)
++..+|||||||+|.++..+++. +.+++++|+ +.+++.|++. .++.++.+|+.+ +++.. |+|++.+++|
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchh
Confidence 45689999999999999999986 467888998 8899888752 568999999988 77654 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 297 CWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 297 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|+++.+..++|+++.++|+|||+++|....
T Consensus 114 ~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 114 HFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 999888889999999999999999987654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.61 E-value=8.2e-16 Score=137.70 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=78.9
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC-cEEEec-ccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAILMK-WILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-D~i~~~-~vlh~ 297 (390)
.+.+|||||||+|.++..+++++. +++++|+ +.|++.|+++ .+++++++|+.+ +++.. |+|+|. +++++
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeec
Confidence 457999999999999999999865 6788998 8899988752 479999999987 55555 999875 67777
Q ss_pred CC-hhHHHHHHHHHHHhCCCCcEEEE
Q 016366 298 WD-DDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 298 ~~-d~~~~~~L~~~~~~L~pgG~lli 322 (390)
+. .++..++|++++++|+|||.+++
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 64 56777899999999999999886
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.60 E-value=3.6e-15 Score=131.82 Aligned_cols=134 Identities=12% Similarity=0.074 Sum_probs=105.1
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCC----CCCCceEEECCCCCC--CCC-C-cEEEecccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP----SYAGVEHVGGNMFES--VPE-G-DAILMKWIL 295 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~----~~~rv~~~~gd~~~~--~p~-~-D~i~~~~vl 295 (390)
+.++.+|||||||+|.++..+++..|+.+++++|+ |.+++.++ +++++..+.+|...+ ... . |++++.+.+
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~ 151 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV 151 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccc
Confidence 67889999999999999999999999999999998 77777655 357889999988773 222 2 777777788
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
|+..+. ..+++++++.|||||++++++.....+....+ ....+++.+.|+++||++++
T Consensus 152 ~~~~~~--~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~--------------------~~~~~e~~~~L~~aGF~ive 209 (230)
T d1g8sa_ 152 AQPNQA--EILIKNAKWFLKKGGYGMIAIKARSIDVTKDP--------------------KEIFKEQKEILEAGGFKIVD 209 (230)
T ss_dssp CSTTHH--HHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH--------------------HHHHHHHHHHHHHHTEEEEE
T ss_pred cchHHH--HHHHHHHHHhcccCceEEEEeeccccCCCCCH--------------------HHHHHHHHHHHHHcCCEEEE
Confidence 877654 48899999999999999998766443321111 11246788999999999999
Q ss_pred EEecC
Q 016366 376 FASCV 380 (390)
Q Consensus 376 ~~~~~ 380 (390)
...+.
T Consensus 210 ~idL~ 214 (230)
T d1g8sa_ 210 EVDIE 214 (230)
T ss_dssp EEECT
T ss_pred EecCC
Confidence 88775
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.59 E-value=2.9e-15 Score=129.67 Aligned_cols=101 Identities=12% Similarity=0.162 Sum_probs=85.9
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCC-CCCCC-cEEEecccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-SVPEG-DAILMKWIL 295 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~~p~~-D~i~~~~vl 295 (390)
+..+++|||||||+|..+..++++.. +++++|+ +.+++.+++ .+++++..+|+.+ +.+.. |+|++..++
T Consensus 28 ~~~~grvLDiGcG~G~~~~~la~~g~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~ 105 (198)
T d2i6ga1 28 VVAPGRTLDLGCGNGRNSLYLAANGY--DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVM 105 (198)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCG
T ss_pred cCCCCcEEEECCCCCHHHHHHHHHhh--hhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeee
Confidence 44567999999999999999999864 6788887 778887664 2678999999988 54444 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
||+++++..++|++++++|+|||++++.+...
T Consensus 106 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 106 MFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp GGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred ecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 99999988999999999999999999877653
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.56 E-value=9.5e-15 Score=125.57 Aligned_cols=109 Identities=13% Similarity=0.093 Sum_probs=89.6
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------------------CCceEEECC
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------------AGVEHVGGN 278 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------------------~rv~~~~gd 278 (390)
....+. ++++.||||+|||+|..+..++++ +.+++++|+ +.+++.++++ ..+++.++|
T Consensus 12 ~~~~l~-~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 88 (201)
T d1pjza_ 12 YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 88 (201)
T ss_dssp HHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHHHcC-CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccc
Confidence 344454 678899999999999999999998 468899998 8899888752 346889999
Q ss_pred CCCCCC--C-C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 279 MFESVP--E-G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 279 ~~~~~p--~-~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
+++..+ . . |+|++..++|+++++....+++++++.|||||++++.......
T Consensus 89 ~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~ 143 (201)
T d1pjza_ 89 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQ 143 (201)
T ss_dssp CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred ccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 987332 1 3 9999999999999988899999999999999999887665443
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.56 E-value=3.7e-15 Score=110.23 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=73.4
Q ss_pred HHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 28 AMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 28 l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
.+....+++.+.+|++|+++||||.|.. ||.|++|||+++|+ ++..+.|+||+|++.|++.+ .+++.|++|+
T Consensus 5 ~l~~l~~~~~~~aL~~av~L~ifd~l~~-gp~s~~eLA~~~g~----~~~~l~rlLr~l~a~gl~~e---~~~~~y~lt~ 76 (85)
T d1tw3a1 5 TLIRLGSLHTPMVVRTAATLRLVDHILA-GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEE---DAPGEFVPTE 76 (85)
T ss_dssp HHHHHHCSHHHHHHHHHHHTTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---EETTEEEECT
T ss_pred HHHHHHchHHHHHHHHHHHcCcHHHhcc-CCCCHHHHHHHhCc----ChhHHHHHHHHHHHCCCeEe---cCCCeEecCH
Confidence 3555588899999999999999999987 79999999999999 99999999999999999987 4678999999
Q ss_pred cccccccCC
Q 016366 108 VSKYFVSNK 116 (390)
Q Consensus 108 ~s~~l~~~~ 116 (390)
.|+.|.+++
T Consensus 77 ~s~~L~~Dh 85 (85)
T d1tw3a1 77 VGELLADDH 85 (85)
T ss_dssp TGGGGSTTS
T ss_pred HHHHhhcCC
Confidence 999888653
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.52 E-value=1e-14 Score=129.82 Aligned_cols=96 Identities=19% Similarity=0.289 Sum_probs=82.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCC--cEEEe-ccccccCCh
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILM-KWILHCWDD 300 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~~-~~vlh~~~d 300 (390)
+++.+|||||||+|.++..+++. ..+++++|+ +.+++.|++.....++.+|+.+ +++.+ |+|++ ..++||++|
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d 118 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 118 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhh
Confidence 46679999999999999999886 467899998 8899999886556688899988 77654 99997 479999998
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
.+ ++|+++++.|+|||.+++..+
T Consensus 119 ~~--~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 119 KD--KAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp HH--HHHHHHHHHEEEEEEEEEEEE
T ss_pred HH--HHHHHHHhhcCcCcEEEEEEC
Confidence 76 799999999999999988654
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.51 E-value=1.2e-14 Score=108.73 Aligned_cols=87 Identities=20% Similarity=0.246 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc
Q 016366 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER 101 (390)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~ 101 (390)
.++++.+++++.+++.+.+|++|+++||||.|.. ||.|++|||+++|+ +++.+.|+||+|++.|++++.. .+.+
T Consensus 5 d~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~-gp~t~~eLA~~~g~----~~~~l~rLlr~L~a~gll~~~~-d~~~ 78 (92)
T d1qzza1 5 DQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA-GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGGE-KQGR 78 (92)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECCC-C-CC
T ss_pred chhHHHHHHHHHchHHHHHHHHHHHcCchHHHhC-CCCCHHHHHHHHCc----CchHHHHHHHHHHHCCCeeeec-CCCc
Confidence 3788999999999999999999999999999987 79999999999999 9999999999999999998731 1234
Q ss_pred ceecCcccccccc
Q 016366 102 LYALNPVSKYFVS 114 (390)
Q Consensus 102 ~y~~t~~s~~l~~ 114 (390)
.|++|+.+..+.+
T Consensus 79 ~~~~t~~g~lL~d 91 (92)
T d1qzza1 79 PLRPTRLGMLLAD 91 (92)
T ss_dssp CCEECTTGGGGST
T ss_pred eecccHHHHhccC
Confidence 6888998887763
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.4e-14 Score=130.55 Aligned_cols=151 Identities=17% Similarity=0.113 Sum_probs=98.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHh----hCCCC--eEEEecc-hHHHhhCCCC-------CCce--EEECCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITS----KYPQI--KAVNFDL-PHVVQDAPSY-------AGVE--HVGGNM 279 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~----~~p~~--~~~~~Dl-~~~~~~a~~~-------~rv~--~~~gd~ 279 (390)
+.++..+...++..+|||||||+|.++..+++ ++++. +++++|. +.+++.+++. .++. +...++
T Consensus 29 ~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 108 (280)
T d1jqea_ 29 PGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETS 108 (280)
T ss_dssp HHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCH
T ss_pred HHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhh
Confidence 34444443234455899999999998777655 45554 5689997 7788877542 3333 344433
Q ss_pred C-------CCCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhh-hhhh
Q 016366 280 F-------ESVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDV-LLMT 349 (390)
Q Consensus 280 ~-------~~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~-~~~~ 349 (390)
. .+.+.. |+|++.+++||++|.. ++|+++++.|+|||.++|.....+. ... . .+..+ ....
T Consensus 109 ~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~--~~l~~l~~~LkpgG~l~i~~~~~~~----~~~-~--l~~~~~~~~~ 179 (280)
T d1jqea_ 109 SEYQSRMLEKKELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGTNAKMLIIVVSGSS----GWD-K--LWKKYGSRFP 179 (280)
T ss_dssp HHHHHHHTTSSSCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEECTTS----HHH-H--HHHHHGGGSC
T ss_pred hhhcchhcccCCCCceeEEEEccceecCCCHH--HHHHHHHhhCCCCCEEEEEEecCcc----hHH-H--HHHHHHHhcC
Confidence 2 122333 9999999999998876 8999999999999999987653211 111 1 01111 1111
Q ss_pred hcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 350 RDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 350 ~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
.....+.++.++|.++|++.||+.+.
T Consensus 180 ~~~~~~~~~~~~~~~~L~~~G~~~~~ 205 (280)
T d1jqea_ 180 QDDLCQYITSDDLTQMLDNLGLKYEC 205 (280)
T ss_dssp CCTTSCCCCHHHHHHHHHHHTCCEEE
T ss_pred CCcccccCCHHHHHHHHHHCCCceEE
Confidence 11234557899999999999998644
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=5.7e-14 Score=124.23 Aligned_cols=131 Identities=10% Similarity=-0.023 Sum_probs=101.8
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-----------------------CCCceEEECCCC
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------------------YAGVEHVGGNMF 280 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------------------~~rv~~~~gd~~ 280 (390)
...+.+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..++++.++|++
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 567789999999999999999987 457899998 778876532 147899999998
Q ss_pred C-C-CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCC-c
Q 016366 281 E-S-VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGG-R 355 (390)
Q Consensus 281 ~-~-~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g-~ 355 (390)
+ + .+.+ |+|+...++|+++++....++++++++|+|||++++.....+..... +. .
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~-------------------gpp~ 181 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP-------------------GPPF 181 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCC-------------------CSSC
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCC-------------------CCCC
Confidence 7 3 3333 99999999999998888999999999999999988877665432110 11 1
Q ss_pred ccCHHHHHHHHHHCCCCeeEEE
Q 016366 356 ERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 356 ~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
..+.++++++|+. +|.+..+.
T Consensus 182 ~~~~~el~~lf~~-~~~i~~le 202 (229)
T d2bzga1 182 YVPHAEIERLFGK-ICNIRCLE 202 (229)
T ss_dssp CCCHHHHHHHHTT-TEEEEEEE
T ss_pred CCCHHHHHHHhcC-CCEEEEEE
Confidence 2478999999965 77765543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=3.7e-14 Score=128.45 Aligned_cols=92 Identities=18% Similarity=0.274 Sum_probs=81.4
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-CCCceEEECCCCC-CCCCC--cEEEeccccccCCh
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDD 300 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d 300 (390)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++++|+.+ +++.+ |+|++.+++|+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 5678999999999999999999999999999998 889998876 4789999999998 77765 99999888876
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+++++|+|||||++++..+.
T Consensus 160 ------~~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 160 ------AEELARVVKPGGWVITATPG 179 (268)
T ss_dssp ------HHHHHHHEEEEEEEEEEEEC
T ss_pred ------HHHHHHHhCCCcEEEEEeeC
Confidence 46788999999999998764
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.47 E-value=5.6e-14 Score=126.06 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=83.8
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCC-C-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP-E- 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p-~- 285 (390)
.+++.+. ++..+|||||||+|..+..+++... .+++++|+ +.+++.|+++ .++.+.++|+.. ++. .
T Consensus 16 ~lI~~~~--~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~ 92 (252)
T d1ri5a_ 16 CLIRLYT--KRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGK 92 (252)
T ss_dssp HHHHHHC--CTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSS
T ss_pred HHHHHhC--CCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccc
Confidence 4455443 5678999999999999999988754 36889998 8888887642 469999999976 443 3
Q ss_pred C-cEEEeccccccC--ChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 286 G-DAILMKWILHCW--DDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 286 ~-D~i~~~~vlh~~--~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
. |+|++..++||+ +.++...+|+++.+.|+|||++++..
T Consensus 93 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 93 EFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 134 (252)
T ss_dssp CEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence 3 999999999997 34567789999999999999988753
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.46 E-value=1.4e-13 Score=118.43 Aligned_cols=104 Identities=16% Similarity=0.283 Sum_probs=82.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC--------CCCceEEECCCCCCCCCC-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFESVPEG- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--------~~rv~~~~gd~~~~~p~~- 286 (390)
-+++.++ ..+..+|||||||+|.++..+++.++++ +++|+ +.+++.+++ ..+++++.+|++++++..
T Consensus 43 lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~v--~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~ 119 (194)
T d1dusa_ 43 ILVENVV-VDKDDDILDLGCGYGVIGIALADEVKST--TMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSEE--EEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred HHHHhCC-cCCCCeEEEEeecCChhHHHHHhhcccc--ceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCC
Confidence 3566666 6678899999999999999999988765 55555 778887764 246899999998866653
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
|+|++..++|+. .+...++++++.+.|+|||++++..
T Consensus 120 fD~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 120 YNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp EEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEcccEEec-chhhhhHHHHHHHhcCcCcEEEEEE
Confidence 999999888764 4445689999999999999988743
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.8e-14 Score=129.35 Aligned_cols=139 Identities=14% Similarity=0.070 Sum_probs=95.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---C--C----------------------------
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---A--G---------------------------- 271 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~--r---------------------------- 271 (390)
..+.+|||||||+|.++..++.... .+++++|+ +.+++.+++. . .
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 4567999999999998877766542 36899998 7888877642 0 0
Q ss_pred --c-eEEECCC----CC-CCCCC--cEEEeccccccCCh--hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhh
Q 016366 272 --V-EHVGGNM----FE-SVPEG--DAILMKWILHCWDD--DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARE 339 (390)
Q Consensus 272 --v-~~~~gd~----~~-~~p~~--D~i~~~~vlh~~~d--~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~ 339 (390)
+ .....+. .. +.+.+ |+|++.+++|+.+. ++...+++++++.|||||++++.+.........
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~------ 202 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMV------ 202 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE------
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccccccee------
Confidence 0 1111121 11 33443 99999999999763 456789999999999999999988764331000
Q ss_pred hhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 340 TSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 340 ~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
.+.. .....++.++++++|++|||+++++...
T Consensus 203 ---~~~~-----~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 234 (257)
T d2a14a1 203 ---GKRE-----FSCVALEKGEVEQAVLDAGFDIEQLLHS 234 (257)
T ss_dssp ---TTEE-----EECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ---cccc-----ccccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 0000 0123468999999999999999888544
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.45 E-value=5.3e-14 Score=107.22 Aligned_cols=95 Identities=54% Similarity=0.780 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcC---CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeeccc
Q 016366 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 97 (390)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g---~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~ 97 (390)
+.++.-..++++.+++.+++|++|++|||||+|+++| ++|..||+.+++.+++..+..|.|+||+|++.|++.++..
T Consensus 4 dee~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~ 83 (107)
T d1kyza1 4 DEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVR 83 (107)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEeee
Confidence 4455567789999999999999999999999999865 6899999999998544345679999999999999976432
Q ss_pred C-C----CcceecCccccccccC
Q 016366 98 G-G----ERLYALNPVSKYFVSN 115 (390)
Q Consensus 98 ~-~----~~~y~~t~~s~~l~~~ 115 (390)
. . +..|.+||.++.|+.+
T Consensus 84 ~~~dg~~~~~Y~LTpvsk~Lv~d 106 (107)
T d1kyza1 84 TQQDGKVQRLYGLATVAKYLVKN 106 (107)
T ss_dssp ECTTSCEEEEEEECHHHHHHSCC
T ss_pred cCCCCCeeeEEecchhHHhhcCC
Confidence 1 1 2369999999988865
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.44 E-value=4.3e-13 Score=116.58 Aligned_cols=102 Identities=12% Similarity=0.045 Sum_probs=80.1
Q ss_pred hhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCC-CCCCC---cEEEec
Q 016366 222 YEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEG---DAILMK 292 (390)
Q Consensus 222 ~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~-~~p~~---D~i~~~ 292 (390)
++ ++++.+|||||||+|.++..+++..|+.+++++|+ |.+++.+++ .+++.++.+|... +.+.. ++.++.
T Consensus 52 l~-lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~ 130 (209)
T d1nt2a_ 52 LK-LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIY 130 (209)
T ss_dssp CC-CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred CC-CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEE
Confidence 45 77889999999999999999999999989999999 888887654 5789999999887 33321 222333
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+.+++..+. ..+++++++.|||||++++.+..
T Consensus 131 ~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 131 QDIAQKNQI--EILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp ECCCSTTHH--HHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ecccChhhH--HHHHHHHHHHhccCCeEEEEEEc
Confidence 345444443 48899999999999999988754
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=4.7e-14 Score=124.79 Aligned_cols=142 Identities=15% Similarity=0.117 Sum_probs=94.1
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC---CCCCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE---SVPEG 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~---~~p~~ 286 (390)
..+.+.+. ..+.+|||||||+|..+..+++..+ .+++++|+ +.+++.|++. .++.++.+|+.. +++.+
T Consensus 44 ~~la~~~~--~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (229)
T d1zx0a1 44 HALAAAAS--SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDG 120 (229)
T ss_dssp HHHHHHHT--TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTT
T ss_pred HHHHHhhc--cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccc
Confidence 33444433 4567999999999999999998765 46888888 8888887752 457778777643 45543
Q ss_pred --cEEE-----eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCH
Q 016366 287 --DAIL-----MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTK 359 (390)
Q Consensus 287 --D~i~-----~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~ 359 (390)
|.|+ +...++++++.. .++++++++|||||+|++.+..... ...... .........
T Consensus 121 ~fD~i~fD~~~~~~~~~~~~~~~--~~~~~~~r~LkpGG~~~~~~~~~~~-------~~~~~~--------~~~~~~~~~ 183 (229)
T d1zx0a1 121 HFDGILYDTYPLSEETWHTHQFN--FIKNHAFRLLKPGGVLTYCNLTSWG-------ELMKSK--------YSDITIMFE 183 (229)
T ss_dssp CEEEEEECCCCCBGGGTTTHHHH--HHHHTHHHHEEEEEEEEECCHHHHH-------HHTTTT--------CSCHHHHHH
T ss_pred cccceeecccccccccccccCHH--HHHHHHHHHcCCCcEEEEEecCCcc-------hhhhhh--------hhhcchhhh
Confidence 7665 566777776654 8999999999999998874433110 000000 001111124
Q ss_pred HHHHHHHHHCCCCeeEEE
Q 016366 360 KEYTELAIAAGFKGINFA 377 (390)
Q Consensus 360 ~e~~~ll~~aGf~~~~~~ 377 (390)
+.+...+.++||+..++.
T Consensus 184 ~~~~~~l~~agF~~~~i~ 201 (229)
T d1zx0a1 184 ETQVPALLEAGFRRENIR 201 (229)
T ss_dssp HHTHHHHHHTTCCGGGEE
T ss_pred hHHHHHHHHCCCeeEEEE
Confidence 556677889999877664
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.40 E-value=3.8e-13 Score=102.70 Aligned_cols=96 Identities=44% Similarity=0.607 Sum_probs=78.5
Q ss_pred HhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcC-C---CCHHHHHHHhccCCCCCC---CcHHHHHHHHhcCcce
Q 016366 20 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG-E---LSAPEIAAQLQAQNVKAP---MMLDRMLRLLVSHRVL 92 (390)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g-~---~t~~eLa~~~~~~~~~~~---~~l~r~L~~L~~~gll 92 (390)
++.++.-..++++.+++.+++|++|++|||||+|.++| + +|++||+.+++++ .+++ ..|.|+||.|++.|++
T Consensus 2 ~~~~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~-~~~p~~~~~L~RiLRlLas~~vf 80 (110)
T d1fp1d1 2 TEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPAS-TQHSDLPNRLDRMLRLLASYSVL 80 (110)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGG-GCCTTHHHHHHHHHHHHHHTTSE
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCC-CCCccHHHHHHHHHHHHHHcCcc
Confidence 45677888999999999999999999999999999765 3 7999999999862 2233 3699999999999999
Q ss_pred eecccC-C----CcceecCccccccccCC
Q 016366 93 ECSVSG-G----ERLYALNPVSKYFVSNK 116 (390)
Q Consensus 93 ~~~~~~-~----~~~y~~t~~s~~l~~~~ 116 (390)
.++... . +..|.+||.++.|+.++
T Consensus 81 ~~~~~~~~~g~~e~~Y~Ltpvsk~Lv~de 109 (110)
T d1fp1d1 81 TSTTRTIEDGGAERVYGLSMVGKYLVPDE 109 (110)
T ss_dssp EEEEEECTTSCEEEEEEECTTGGGGSTTC
T ss_pred ccccccCCCCCeeeEEecchhhHhhcCCC
Confidence 754221 1 23599999999998765
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.36 E-value=4e-13 Score=119.99 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=92.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCC--CcEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE--GDAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~--~D~i~~~~vlh~ 297 (390)
.++.+|||+|||+|.++..+++.. .+++++|+ +.+++.|+++ -+++++.+|+.+..+. .|+|+++...+
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~g--~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~- 195 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CccCEEEEcccchhHHHHHHHhcC--CEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccccc-
Confidence 467899999999999999887754 57888888 8888888752 3578899998765443 39998864443
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
...++++.++++|||||++++++.... ..+++.+.++++||++++..
T Consensus 196 ----~l~~l~~~~~~~LkpGG~lilSgil~~-----------------------------~~~~v~~~~~~~Gf~~~~~~ 242 (254)
T d2nxca1 196 ----LHAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ----HHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTCEEEEEE
T ss_pred ----cHHHHHHHHHHhcCCCcEEEEEecchh-----------------------------hHHHHHHHHHHCCCEEEEEE
Confidence 345789999999999999998765311 14667888999999998877
Q ss_pred ecC
Q 016366 378 SCV 380 (390)
Q Consensus 378 ~~~ 380 (390)
...
T Consensus 243 ~~~ 245 (254)
T d2nxca1 243 AEG 245 (254)
T ss_dssp EET
T ss_pred EEC
Confidence 654
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=4.4e-13 Score=120.94 Aligned_cols=138 Identities=13% Similarity=0.126 Sum_probs=94.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CC---------------------------
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AG--------------------------- 271 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~r--------------------------- 271 (390)
...+.++||||||+|.+....+.+... +++++|. +.+++.+++. ..
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 345789999999999887655544433 7899998 8888876531 00
Q ss_pred ----ceEEECCCCCC-------CCCC--cEEEeccccccCCh--hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchH
Q 016366 272 ----VEHVGGNMFES-------VPEG--DAILMKWILHCWDD--DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSA 336 (390)
Q Consensus 272 ----v~~~~gd~~~~-------~p~~--D~i~~~~vlh~~~d--~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~ 336 (390)
-.....|+.++ .+.+ |+|++.++||+.+. ++..++|+++++.|||||.|++.+.......
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~----- 205 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWY----- 205 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEE-----
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCccc-----
Confidence 12344566441 1122 99999999999762 3567899999999999999999887643210
Q ss_pred HhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 337 ARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 337 ~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
....... .....+.++++++|+++||++++..
T Consensus 206 -----~~~~~~~----~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 206 -----LAGEARL----TVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp -----EETTEEE----ECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred -----ccCCccc----ccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 0000000 1123589999999999999988754
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.34 E-value=5.2e-13 Score=118.76 Aligned_cols=103 Identities=12% Similarity=0.083 Sum_probs=80.8
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCCCCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPEG 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~p~~ 286 (390)
..++..++ ..++.+|||+|||+|.++..+++. .|+.+++.+|. +++++.|++ ..+|++..+|+.+.+++.
T Consensus 75 ~~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~ 153 (250)
T d1yb2a1 75 SYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 153 (250)
T ss_dssp ------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccc
Confidence 34666666 788999999999999999999986 68889999998 778887775 268999999998866553
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 287 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|+|++ ++++++ .+|.+++++|||||++++..+.
T Consensus 154 ~fD~V~l-----d~p~p~--~~l~~~~~~LKpGG~lv~~~P~ 188 (250)
T d1yb2a1 154 MYDAVIA-----DIPDPW--NHVQKIASMMKPGSVATFYLPN 188 (250)
T ss_dssp CEEEEEE-----CCSCGG--GSHHHHHHTEEEEEEEEEEESS
T ss_pred eeeeeee-----cCCchH--HHHHHHHHhcCCCceEEEEeCC
Confidence 99875 456665 7899999999999999986543
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=3e-12 Score=118.98 Aligned_cols=111 Identities=13% Similarity=0.216 Sum_probs=89.0
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC---------------CCCceEEECC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------------YAGVEHVGGN 278 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------------~~rv~~~~gd 278 (390)
...+++.+. +.+..+|||||||+|..+..+++.++..+++++|+ +.+++.|++ ..+|+++++|
T Consensus 140 ~~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 140 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 346677776 78889999999999999999999999889999998 777766543 3579999999
Q ss_pred CCC-CCCC----CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 279 MFE-SVPE----GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 279 ~~~-~~p~----~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
+.+ ++.+ +|+|++.+.+| .++ ..+.|+++++.|||||++++.+.+.+.
T Consensus 219 ~~~~~~~~~~~~advi~~~~~~f-~~~--~~~~l~e~~r~LKpGg~iv~~~~~~~~ 271 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVIFVNNFAF-GPE--VDHQLKERFANMKEGGRIVSSKPFAPL 271 (328)
T ss_dssp TTSHHHHHHHHHCSEEEECCTTT-CHH--HHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred ccccccccccCcceEEEEcceec-chH--HHHHHHHHHHhCCCCcEEEEecccCCC
Confidence 987 5433 48888776554 343 458899999999999999988876554
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.30 E-value=1.3e-12 Score=116.88 Aligned_cols=105 Identities=14% Similarity=0.239 Sum_probs=89.2
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCC---------CCCceEEECCCCC-C
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFE-S 282 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~---------~~rv~~~~gd~~~-~ 282 (390)
+..++..++ ..++.+|||+|||+|.++..+++. .|+-+++.+|+ +++++.|++ .++++++.+|+.+ +
T Consensus 85 ~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 85 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 456777777 889999999999999999999997 79999999998 888888775 2689999999987 6
Q ss_pred CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 283 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 283 ~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
++++ |.|++ ++++++ .++.+++++|||||++++..+..
T Consensus 164 ~~~~~fDaV~l-----dlp~P~--~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp CCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEESSH
T ss_pred ccCCCcceEEE-----ecCCHH--HHHHHHHhccCCCCEEEEEeCcc
Confidence 7765 99875 578877 88999999999999999876653
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.29 E-value=3.1e-12 Score=110.47 Aligned_cols=97 Identities=16% Similarity=0.221 Sum_probs=77.7
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCC-C--CCCC--cEEEecccc
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-S--VPEG--DAILMKWIL 295 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~--~p~~--D~i~~~~vl 295 (390)
...|||||||+|.++..+++.+|+..++++|+ +.++..+.+ .+||.++.+|+.. . ++.+ |.|++.+..
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 34789999999999999999999999999998 666665543 3789999999876 2 5554 988887777
Q ss_pred ccCChhH------HHHHHHHHHHhCCCCcEEEEEe
Q 016366 296 HCWDDDH------CLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 296 h~~~d~~------~~~~L~~~~~~L~pgG~lli~e 324 (390)
.+..... ...+|+.+++.|||||.|+|.+
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 6544321 1379999999999999998864
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.28 E-value=2.2e-12 Score=115.96 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=98.5
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE 285 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~ 285 (390)
+..++..++ ..++.+|||+|||+|.++..+++.. |+.+++++|. +++++.|+++ +++.+..+|+...++.
T Consensus 92 ~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 92 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence 446777777 8899999999999999999999875 8889999998 8888888762 5688888887665544
Q ss_pred C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHH
Q 016366 286 G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT 363 (390)
Q Consensus 286 ~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~ 363 (390)
. |.| +++.++++ .+|+++.++|||||++++..++.. ...+..
T Consensus 171 ~~~D~V-----~~d~p~p~--~~l~~~~~~LKpGG~lv~~~P~~~-----------------------------Qv~~~~ 214 (266)
T d1o54a_ 171 KDVDAL-----FLDVPDPW--NYIDKCWEALKGGGRFATVCPTTN-----------------------------QVQETL 214 (266)
T ss_dssp CSEEEE-----EECCSCGG--GTHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred cceeee-----EecCCCHH--HHHHHHHhhcCCCCEEEEEeCccc-----------------------------HHHHHH
Confidence 3 665 45778877 889999999999999998655421 123445
Q ss_pred HHHHHCCCCeeEEEe
Q 016366 364 ELAIAAGFKGINFAS 378 (390)
Q Consensus 364 ~ll~~aGf~~~~~~~ 378 (390)
+.+++.||..+++..
T Consensus 215 ~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 215 KKLQELPFIRIEVWE 229 (266)
T ss_dssp HHHHHSSEEEEEEEC
T ss_pred HHHHHCCceeEEEEE
Confidence 677888998776654
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.27 E-value=3e-12 Score=109.19 Aligned_cols=101 Identities=19% Similarity=0.158 Sum_probs=81.0
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCC--C
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP--E 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p--~ 285 (390)
.++..+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.|+++ ++|+++++|+.+ ..+ .
T Consensus 24 ~il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~ 100 (186)
T d1l3ia_ 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (186)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHhcC-CCCCCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence 4555565 77889999999999999999998764 6788887 8888888762 689999999877 333 2
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 286 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 286 ~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
.|+|++....++. .++++.+.+.|+|||++++...
T Consensus 101 ~D~v~~~~~~~~~-----~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 101 IDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp EEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCEEEEeCccccc-----hHHHHHHHHHhCcCCEEEEEee
Confidence 3999988766542 4789999999999999987654
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=4.6e-12 Score=115.85 Aligned_cols=104 Identities=21% Similarity=0.244 Sum_probs=77.5
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----------CCceEEECCCCC---C
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFE---S 282 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----------~rv~~~~gd~~~---~ 282 (390)
.+...+. ..+..+|||||||+|.++..++++ +.+++++|+ +.|++.|++. .+..+...|+.. +
T Consensus 47 ~l~~~l~-~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T d1xvaa_ 47 WLLGLLR-QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD 123 (292)
T ss_dssp HHHHHHH-HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred HHHHHhh-hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccc
Confidence 3444444 456689999999999999999987 468999998 8899887652 234556666643 2
Q ss_pred CC--CC-cEEEec-cccccCCh-----hHHHHHHHHHHHhCCCCcEEEEE
Q 016366 283 VP--EG-DAILMK-WILHCWDD-----DHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 283 ~p--~~-D~i~~~-~vlh~~~d-----~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.| .. |+|++. ++++|+++ ++...+|++++++|||||+|++.
T Consensus 124 ~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 124 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp SCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 23 33 877764 68888864 45778999999999999998874
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.25 E-value=2.1e-11 Score=106.79 Aligned_cols=141 Identities=12% Similarity=0.056 Sum_probs=97.9
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCC----CCCCceEEECCCCCC--CC--CC--cEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAP----SYAGVEHVGGNMFES--VP--EG--DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~----~~~rv~~~~gd~~~~--~p--~~--D~i~~~ 292 (390)
+.++.+|||+|||+|.++..+++.. |+-+++++|+ +.+++.++ +.+++..+.+|...+ .+ .. |+|++
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~- 149 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE- 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence 6788999999999999999999974 7889999998 77777655 357788888888652 22 12 65554
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
.+++..+ ...+++++++.|||||+++|+......+..... .....+..++ .+.||+
T Consensus 150 -d~~~~~~--~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~--------------------~~v~~~v~~l-~~~gf~ 205 (227)
T d1g8aa_ 150 -DVAQPTQ--AKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEP--------------------EQVFREVERE-LSEYFE 205 (227)
T ss_dssp -CCCSTTH--HHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCH--------------------HHHHHHHHHH-HHTTSE
T ss_pred -Eccccch--HHHHHHHHHHhcccCCeEEEEEECCccCCCCCH--------------------HHHHHHHHHH-HHcCCE
Confidence 3444333 447899999999999999987654322111100 0012233444 467999
Q ss_pred eeEEEecCC---ceeEEEEeC
Q 016366 373 GINFASCVC---NLYIMEFFK 390 (390)
Q Consensus 373 ~~~~~~~~~---~~~vi~~~k 390 (390)
+++...+.. .+.++.++|
T Consensus 206 iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 206 VIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEEC
T ss_pred EEEEEcCCCCCCceEEEEEEe
Confidence 999887753 578888876
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=5.2e-11 Score=106.96 Aligned_cols=133 Identities=15% Similarity=0.172 Sum_probs=100.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCCC--cEEEecccc-
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG--DAILMKWIL- 295 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~~--D~i~~~~vl- 295 (390)
....+|||+|||+|..+..++..+|+.+++++|+ +.+++.|+++ .+|+++.+|++++++.. |+|+++=-.
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence 4567899999999999999999999999999999 8888887763 57999999999977653 999987222
Q ss_pred ------------ccCCh----------hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCC
Q 016366 296 ------------HCWDD----------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG 353 (390)
Q Consensus 296 ------------h~~~d----------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 353 (390)
.+=|. ....++++.+.+.|+|||.+++ |.- .
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig--~------------------------ 239 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EHG--W------------------------ 239 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-ECC--S------------------------
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EEC--c------------------------
Confidence 11110 2356789999999999998876 221 0
Q ss_pred CcccCHHHHHHHHHHCCCCeeEEEec-CCceeEEEE
Q 016366 354 GRERTKKEYTELAIAAGFKGINFASC-VCNLYIMEF 388 (390)
Q Consensus 354 g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~ 388 (390)
...+.+.+++++.||+.+++..- .+...++.+
T Consensus 240 ---~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~ 272 (274)
T d2b3ta1 240 ---QQGEAVRQAFILAGYHDVETCRDYGDNERVTLG 272 (274)
T ss_dssp ---SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEE
T ss_pred ---hHHHHHHHHHHHCCCCeEEEEECCCCCceEEEE
Confidence 01456688999999987776544 455556554
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.22 E-value=7.5e-12 Score=108.98 Aligned_cols=99 Identities=19% Similarity=0.300 Sum_probs=80.8
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCC------CCCceEEECCCCCCCC-CC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFESVP-EG 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~~~p-~~ 286 (390)
..+++.+. ++++.+|||||||+|.++..+++.. ++.+++.+|. +.+++.+++ ..++.++.+|..+..+ .+
T Consensus 65 a~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~ 143 (213)
T d1dl5a1 65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (213)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence 45666676 7889999999999999999999865 6778999997 888888775 3689999999887333 33
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 287 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
|+|++...+++.++. +.+.|+|||+|++.
T Consensus 144 ~fD~I~~~~~~~~~p~~--------l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 144 PYDVIFVTVGVDEVPET--------WFTQLKEGGRVIVP 174 (213)
T ss_dssp CEEEEEECSBBSCCCHH--------HHHHEEEEEEEEEE
T ss_pred chhhhhhhccHHHhHHH--------HHHhcCCCcEEEEE
Confidence 999999999988753 45679999999874
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.21 E-value=3.2e-11 Score=103.95 Aligned_cols=97 Identities=19% Similarity=0.273 Sum_probs=74.5
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCC---CCCCC--cEEEecccc
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE---SVPEG--DAILMKWIL 295 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~---~~p~~--D~i~~~~vl 295 (390)
...|||||||+|.++..+++.+|+..++++|+ +.++..+.+ .+++.++.+|+.+ .++.. |.|++.+.-
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 34799999999999999999999999999998 666666543 3789999999876 24543 887765544
Q ss_pred ccCChhH------HHHHHHHHHHhCCCCcEEEEEe
Q 016366 296 HCWDDDH------CLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 296 h~~~d~~------~~~~L~~~~~~L~pgG~lli~e 324 (390)
.+..... ...+|+.+.+.|+|||.|.+.+
T Consensus 112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 3222111 1478999999999999998854
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.16 E-value=4.8e-11 Score=112.75 Aligned_cols=111 Identities=13% Similarity=0.228 Sum_probs=84.8
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---------------CCceE-EEC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------AGVEH-VGG 277 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---------------~rv~~-~~g 277 (390)
+..+++.+. +.++.+|||||||+|..+..++..++..+++|+|+ +.+++.|++. ..+.+ ..+
T Consensus 205 i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 205 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 456778777 88889999999999999999999999889999998 7788877642 22344 456
Q ss_pred CCCC-C-----CCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 278 NMFE-S-----VPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 278 d~~~-~-----~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
++.+ + ++.+|+|++.+.+| . ++..+.|+++++.|||||++++.+.+.+.
T Consensus 284 ~f~~~~~~d~~~~~adVV~inn~~f-~--~~l~~~L~ei~r~LKPGGrIVs~~~~~~~ 338 (406)
T d1u2za_ 284 SFVDNNRVAELIPQCDVILVNNFLF-D--EDLNKKVEKILQTAKVGCKIISLKSLRSL 338 (406)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTC-C--HHHHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred chhhccccccccccceEEEEecccC-c--hHHHHHHHHHHHhcCCCcEEEEecccCCC
Confidence 6654 2 22348888776543 3 34568999999999999999988876544
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.1e-10 Score=102.21 Aligned_cols=100 Identities=20% Similarity=0.190 Sum_probs=78.7
Q ss_pred HHHHHHhh-ccCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCC-----------CCCceEEECCCCC
Q 016366 216 ERILEHYE-GFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFE 281 (390)
Q Consensus 216 ~~l~~~~~-~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~-----------~~rv~~~~gd~~~ 281 (390)
..+++.+. ..+++.+|||||||+|..+..+++. .|..+++++|+ +++++.+++ ..+++++.+|...
T Consensus 64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~ 143 (224)
T d1i1na_ 64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM 143 (224)
T ss_dssp HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence 34555552 2567889999999999999888885 57889999998 888887764 2578999999887
Q ss_pred C-CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 282 S-VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 282 ~-~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
. .+.+ |+|++...+++.++. +.+.|||||++++.
T Consensus 144 ~~~~~~~fD~I~~~~~~~~ip~~--------l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 144 GYAEEAPYDAIHVGAAAPVVPQA--------LIDQLKPGGRLILP 180 (224)
T ss_dssp CCGGGCCEEEEEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred ccchhhhhhhhhhhcchhhcCHH--------HHhhcCCCcEEEEE
Confidence 3 3333 999999999987753 46789999999984
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=8.1e-11 Score=108.30 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=88.6
Q ss_pred HHHHHhhccH----HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCC--------
Q 016366 203 YHEAMFNHST----IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS-------- 268 (390)
Q Consensus 203 ~~~~m~~~~~----~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~-------- 268 (390)
|...|...++ ..+..++..++ ..++.+|||+|||+|.++..+++. .|+-+++.+|+ +++++.|++
T Consensus 71 ~~~~~~r~tqiiypkD~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~ 149 (324)
T d2b25a1 71 YVVLMKRGTAITFPKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS 149 (324)
T ss_dssp HHHHSCCSSCCCCHHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCCCcccccccHHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhh
Confidence 4444554443 23456777777 889999999999999999999986 58889999998 777777664
Q ss_pred ---------CCCceEEECCCCCC---CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 269 ---------YAGVEHVGGNMFES---VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 269 ---------~~rv~~~~gd~~~~---~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
.+++++..+|+.+. ++.. |.|++ ++|+++ .+|.+++++|||||++++.-++.
T Consensus 150 ~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 150 WKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp HTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEEEEEEEEEEESSH
T ss_pred hhhhhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhccCCCEEEEEeCCH
Confidence 15799999998763 2332 88875 566665 67999999999999999876553
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.96 E-value=4.1e-10 Score=104.30 Aligned_cols=94 Identities=15% Similarity=0.218 Sum_probs=73.1
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC-------CCCceEEECCCCC-CCCCC--cEEEeccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFE-SVPEG--DAILMKWILH 296 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-------~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh 296 (390)
++.+|||||||+|.++..++++. ..+++++|...+++.+++ .++++++.+|+.+ ++|.. |+|++..+.+
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 46899999999999998877764 347889998656555543 2679999999998 77753 9999877766
Q ss_pred cCCh-hHHHHHHHHHHHhCCCCcEEE
Q 016366 297 CWDD-DHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 297 ~~~d-~~~~~~L~~~~~~L~pgG~ll 321 (390)
.... .....++..+.+.|||||+++
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccchhHHHHHHHHHhccCCCeEEE
Confidence 5543 335578888999999999875
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.95 E-value=3.8e-10 Score=104.00 Aligned_cols=94 Identities=19% Similarity=0.274 Sum_probs=72.6
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC-------CCCceEEECCCCC-CCCCC--cEEEeccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFE-SVPEG--DAILMKWILH 296 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-------~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh 296 (390)
++.+|||||||+|.++..++++.+ .+++++|...+...+++ .++|+++.+|+.+ +.+.. |+|++....|
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 467899999999999998888654 47888997443333322 3679999999998 66643 9999887777
Q ss_pred cCChh-HHHHHHHHHHHhCCCCcEEE
Q 016366 297 CWDDD-HCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 297 ~~~d~-~~~~~L~~~~~~L~pgG~ll 321 (390)
....+ ....++..+.+.|+|||+++
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 65433 46689999999999999876
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.92 E-value=1.4e-09 Score=92.79 Aligned_cols=98 Identities=18% Similarity=0.175 Sum_probs=72.7
Q ss_pred CCcceEEEEcCCccHH----HHHHHhh----CCCCeEEEecc-hHHHhhCCCC---------------------------
Q 016366 226 QNVERLVDVGGGFGVT----LSMITSK----YPQIKAVNFDL-PHVVQDAPSY--------------------------- 269 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~----~~~l~~~----~p~~~~~~~Dl-~~~~~~a~~~--------------------------- 269 (390)
.+..||+++|||+|.- +..+.+. .+++++++.|+ +.+++.|++-
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 4567999999999963 3333332 23457888887 7788776530
Q ss_pred ----------CCceEEECCCCCC--CCC-C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 270 ----------AGVEHVGGNMFES--VPE-G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 270 ----------~rv~~~~gd~~~~--~p~-~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
..+.+...+...+ .+. . |+|+|.|||++++++...++|++++++|+|||.|++-
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1255666666652 222 3 9999999999999999999999999999999998873
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.90 E-value=8.7e-10 Score=95.98 Aligned_cols=97 Identities=15% Similarity=0.259 Sum_probs=75.6
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCCCCCC-C--c
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFESVPE-G--D 287 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~~~p~-~--D 287 (390)
..+++.+. +.++.+|||||||+|.++..+++... +++.+|. +..++.+++ ..+++++.+|.....++ + |
T Consensus 60 a~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~~--~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD 136 (224)
T d1vbfa_ 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (224)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHHhh-hcccceEEEecCCCCHHHHHHHHHhc--ccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence 34667777 88899999999999999988888764 5666775 777666654 47899999998774443 3 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
+|++...+++.++. +.+.|+|||+|++.
T Consensus 137 ~Iiv~~a~~~ip~~--------l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 137 RVVVWATAPTLLCK--------PYEQLKEGGIMILP 164 (224)
T ss_dssp EEEESSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred HHHhhcchhhhhHH--------HHHhcCCCCEEEEE
Confidence 99999988887753 34689999999874
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=2.3e-09 Score=98.35 Aligned_cols=97 Identities=19% Similarity=0.219 Sum_probs=73.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC-------CCCceEEECCCCC-CCCCC--cEEEeccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFE-SVPEG--DAILMKWI 294 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-------~~rv~~~~gd~~~-~~p~~--D~i~~~~v 294 (390)
..++.+|||||||+|.++..++++.+ .+++++|..+....+++ .++|+++.+|+.+ +.+.. |+|++...
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 44678999999999999999888765 47899998332222221 3689999999998 66643 99999877
Q ss_pred cccCChh-HHHHHHHHHHHhCCCCcEEEE
Q 016366 295 LHCWDDD-HCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 295 lh~~~d~-~~~~~L~~~~~~L~pgG~lli 322 (390)
.|....+ ....++....+.|+|||+++-
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeecccccccHHHHHHHHhcCCCCcEEec
Confidence 7775543 455778878899999998873
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.82 E-value=1.3e-09 Score=92.51 Aligned_cols=109 Identities=17% Similarity=0.223 Sum_probs=86.1
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-----CCCceEEECCCCC-C-----
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFE-S----- 282 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~rv~~~~gd~~~-~----- 282 (390)
..++++.+. ..+...+||++||+|.++..+++++|+.+++++|. +.+++.+++ .+|+.++.++|.+ .
T Consensus 12 l~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~ 90 (192)
T d1m6ya2 12 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 90 (192)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence 456777776 67788999999999999999999999999999998 889988875 2689999999865 2
Q ss_pred CCC-C-cEEEecccc---------ccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 283 VPE-G-DAILMKWIL---------HCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 283 ~p~-~-D~i~~~~vl---------h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.+. . |.|++..-+ ..+ ....+.|..+.+.|+|||+++++++-
T Consensus 91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~--~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 91 LGIEKVDGILMDLGVSTYQLKGENREL--ENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp TTCSCEEEEEEECSCCHHHHHTSHTHH--HHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred cCCCCcceeeeccchhHhhhhhhhccc--hhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 222 2 888765333 122 22457899999999999999998865
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.76 E-value=6.9e-09 Score=90.20 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=76.2
Q ss_pred HHHHHHhh-ccCCcceEEEEcCCccHHHHHHHhh------CCCCeEEEecc-hHHHhhCCCC-----------CCceEEE
Q 016366 216 ERILEHYE-GFQNVERLVDVGGGFGVTLSMITSK------YPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVG 276 (390)
Q Consensus 216 ~~l~~~~~-~~~~~~~iLDiG~G~G~~~~~l~~~------~p~~~~~~~Dl-~~~~~~a~~~-----------~rv~~~~ 276 (390)
..+++.+. .+.+..+|||||||+|..+..+++. .+..+++.+|. ++.++.++++ .+|.++.
T Consensus 68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~ 147 (223)
T d1r18a_ 68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 147 (223)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence 34566552 2678899999999999998888764 34567888887 7777777542 5899999
Q ss_pred CCCCCCCC-CC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 277 GNMFESVP-EG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 277 gd~~~~~p-~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
+|..+..+ .+ |.|++...+...|+. +.+.|+|||++++.
T Consensus 148 ~d~~~~~~~~~~fD~Iiv~~a~~~~p~~--------l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 148 GDGRKGYPPNAPYNAIHVGAAAPDTPTE--------LINQLASGGRLIVP 189 (223)
T ss_dssp SCGGGCCGGGCSEEEEEECSCBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred cccccccccccceeeEEEEeechhchHH--------HHHhcCCCcEEEEE
Confidence 99987433 33 999999999887752 45799999999874
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.75 E-value=6.3e-09 Score=89.84 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=75.8
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCCCCC-CC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFESVP-EG- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~~~p-~~- 286 (390)
..+++.+. ..+..+|||||||+|..+..+++... .+++.+|. +.+++.+++ .+++.++++|..+-.+ .+
T Consensus 68 a~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 68 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhhc-cCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence 45666677 78889999999999999988887643 44666665 777777765 3789999999987444 33
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
|.|++...+...|+. +.+.|+|||++++.
T Consensus 146 fD~Iiv~~a~~~ip~~--------l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 146 YDVIIVTAGAPKIPEP--------LIEQLKIGGKLIIP 175 (215)
T ss_dssp EEEEEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred ceeEEeecccccCCHH--------HHHhcCCCCEEEEE
Confidence 999999998877753 34579999999874
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.73 E-value=8.7e-09 Score=91.73 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=88.7
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCC--cEEEeccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG--DAILMKWI 294 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~--D~i~~~~v 294 (390)
..++.+|||+|||+|.++..++++. ..+++++|+ |..++.++++ ++|+++++|+.+-.+.. |.|++...
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence 3567899999999999999999874 568999998 8887777652 57999999998744443 98886532
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCee
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 374 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 374 (390)
- . ...+|..+.+.|+|||++.+.+.+..+. ......+.++++.++.||++.
T Consensus 184 ~----~--~~~~l~~a~~~l~~gG~lh~~~~~~~~~-----------------------~~~~~~e~~~~~~~~~g~~v~ 234 (260)
T d2frna1 184 V----R--THEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE 234 (260)
T ss_dssp S----S--GGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred C----c--hHHHHHHHHhhcCCCCEEEEEecccccc-----------------------chhhHHHHHHHHHHHcCCceE
Confidence 1 1 2367888999999999998876653221 001235566788889999874
Q ss_pred E
Q 016366 375 N 375 (390)
Q Consensus 375 ~ 375 (390)
.
T Consensus 235 ~ 235 (260)
T d2frna1 235 K 235 (260)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=7.6e-07 Score=78.40 Aligned_cols=74 Identities=11% Similarity=0.041 Sum_probs=57.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC----C---CCC--cE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES----V---PEG--DA 288 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~----~---p~~--D~ 288 (390)
....++||||||+|..+..++.+.|+.+++++|+ +.+++.|+++ +++.++..+..+. + ... |+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 3456999999999999999999999999999999 8888888762 6788887655432 1 122 99
Q ss_pred EEeccccccCC
Q 016366 289 ILMKWILHCWD 299 (390)
Q Consensus 289 i~~~~vlh~~~ 299 (390)
|+|+=-++.-.
T Consensus 140 ivsNPPY~~~~ 150 (250)
T d2h00a1 140 CMCNPPFFANQ 150 (250)
T ss_dssp EEECCCCC---
T ss_pred EEecCcccccc
Confidence 99998877533
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.39 E-value=6.1e-08 Score=83.62 Aligned_cols=98 Identities=9% Similarity=0.153 Sum_probs=71.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCCC-------CC--c
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVP-------EG--D 287 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~p-------~~--D 287 (390)
.++.+|||||||+|..+..+++..+ +.+++.+|. +.+.+.+++ .++|+++.||..+.++ .. |
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 4578999999999999999999875 578999998 777777764 2679999999865222 12 8
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
+|++.+ +.........+.++.+.|+|||.++ +|.+.
T Consensus 135 ~ifiD~---~~~~~~~~~~l~~~~~lLkpGGvIv-~Ddvl 170 (214)
T d2cl5a1 135 MVFLDH---WKDRYLPDTLLLEKCGLLRKGTVLL-ADNVI 170 (214)
T ss_dssp EEEECS---CGGGHHHHHHHHHHTTCEEEEEEEE-ESCCC
T ss_pred eeeecc---cccccccHHHHHHHhCccCCCcEEE-EeCcC
Confidence 888763 2222222345777788999999755 45543
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.35 E-value=7.5e-08 Score=78.44 Aligned_cols=93 Identities=11% Similarity=-0.020 Sum_probs=67.3
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCC--CCC--CcEEEeccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFES--VPE--GDAILMKWI 294 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~--~p~--~D~i~~~~v 294 (390)
.+.+|||+|||+|.++.+.+.+... +++.+|. +.+++.+++ .++++++++|..+. .+. .|+|++.=-
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 5689999999999999998888654 8888887 777766554 25799999998762 222 399987532
Q ss_pred cccCChhHHHHHHHHHHH--hCCCCcEEEEE
Q 016366 295 LHCWDDDHCLRILKNCYK--AVPGNGKVIVM 323 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~--~L~pgG~lli~ 323 (390)
. .......+|..+.+ .|+|||.+++-
T Consensus 93 y---~~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 93 Y---AKETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp S---HHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred h---ccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 2 23334566776654 58999987764
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=4.1e-07 Score=78.45 Aligned_cols=98 Identities=12% Similarity=0.230 Sum_probs=74.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCC--------CCC-
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESV--------PEG- 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~--------p~~- 286 (390)
..++++|||||||+|..+..+++..| +.+++.+|. +...+.|++ .++++++.||+.+.+ +..
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 45789999999999999999999876 688899887 666666654 378999999986521 122
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|+|+... ........+..+.+.|+|||.+++-+...
T Consensus 137 D~ifiD~-----dk~~y~~~~~~~~~lL~~GGvii~Dn~l~ 172 (219)
T d2avda1 137 DVAVVDA-----DKENCSAYYERCLQLLRPGGILAVLRVLW 172 (219)
T ss_dssp EEEEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred cEEEEeC-----CHHHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 8887753 22334578899999999999887755543
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.25 E-value=7.3e-07 Score=79.20 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=53.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC----CcEEEec
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE----GDAILMK 292 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~----~D~i~~~ 292 (390)
.+..+++|+|||+|..+..++ ++|+.+++++|+ +.+++.|+++ .++.+..+|++++.+. .|+|+++
T Consensus 109 ~~~~~vld~g~GsG~i~~~la-~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 109 YGIKTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp HTCCEEEEESCTTSHHHHHHH-HHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred ccccEEEEeeeeeehhhhhhh-hcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 345689999999999999987 569999999998 8888877752 5688899999885542 2999887
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.24 E-value=3.7e-07 Score=83.04 Aligned_cols=99 Identities=18% Similarity=0.132 Sum_probs=74.8
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-----------CCCceEEECCCCCC---CCCC-cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFES---VPEG-DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------~~rv~~~~gd~~~~---~p~~-D~i 289 (390)
+++++||.||+|.|..+.++++..|..+++.+|+ |.+++.+++ .+|++++.+|..+- .+.. |+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 5678999999999999999999888888888888 888887764 36899999999762 2333 999
Q ss_pred Eeccc--cccC-Ch--hHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 290 LMKWI--LHCW-DD--DHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 290 ~~~~v--lh~~-~d--~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
++... ...- +. --..++++.|++.|+|||.+++.-
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 85432 1110 10 112478999999999999887743
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.21 E-value=8.1e-07 Score=75.06 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=52.3
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCceEEECCCCCCCCCCcEEEecccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVPEGDAILMKWIL 295 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~~~p~~D~i~~~~vl 295 (390)
.+.+|||+|||+|.++..++...+. +++++|+ +.+++.++++ .+++++++|+.+.-...|+|+++=-+
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~-~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAE-SVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPF 117 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBS-EEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCC-cccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeCccc
Confidence 3689999999999999887776543 6788887 8888888864 77999999987522234999987433
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.16 E-value=6.4e-07 Score=82.07 Aligned_cols=100 Identities=15% Similarity=0.159 Sum_probs=73.4
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---CC---CC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP---EG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~p---~~-D~i~ 290 (390)
+++.+|||+|||+|.++..++.... .+++.+|+ +.+++.++++ ++++++++|+++. ++ .. |+|+
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 4678999999999999999988754 47899998 7888887752 5789999998762 11 22 9999
Q ss_pred eccccccCCh---h----HHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 291 MKWILHCWDD---D----HCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 291 ~~~vlh~~~d---~----~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+.-....-.. . .-.+++..+.+.|+|||+|+++...
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 8533221111 1 1345889999999999998886643
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.16 E-value=1.2e-06 Score=76.34 Aligned_cols=93 Identities=10% Similarity=0.255 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCC----CCCCceEEECCCCC-CCCCC-
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAP----SYAGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~----~~~rv~~~~gd~~~-~~p~~- 286 (390)
..+..+++... .....+|||||||+|.++..+++....+.++..| +.+++..+ ..++++++.+|+.+ +++..
T Consensus 8 ~i~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D-~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~ 85 (235)
T d1qama_ 8 HNIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEID-HKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 85 (235)
T ss_dssp HHHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSC-HHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCcCceEEEeec-cchHHHHHHHhhcccchhhhhhhhhhccccccc
Confidence 44566777666 6788999999999999999999986554444444 66665544 35889999999998 77765
Q ss_pred cEEEeccccccCChhHHHHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCY 311 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~ 311 (390)
...+.+++=++.+. .++.++.
T Consensus 86 ~~~vv~NLPYnIss----~il~~ll 106 (235)
T d1qama_ 86 SYKIFGNIPYNIST----DIIRKIV 106 (235)
T ss_dssp CCEEEEECCGGGHH----HHHHHHH
T ss_pred cceeeeeehhhhhH----HHHHHHH
Confidence 44444554444443 4555543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.15 E-value=5.4e-07 Score=80.99 Aligned_cols=98 Identities=21% Similarity=0.231 Sum_probs=73.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCC---CCCC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~---~p~~-D~i~ 290 (390)
+++.+||-||+|.|..+.++++..|..+++.+|+ |.+++.+++ .+|++++.+|..+- .+.. |+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 4678999999999999999998877778888887 888888775 37999999999762 2223 9998
Q ss_pred eccccccCChh---HHHHHHHHHHHhCCCCcEEEEE
Q 016366 291 MKWILHCWDDD---HCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 291 ~~~vlh~~~d~---~~~~~L~~~~~~L~pgG~lli~ 323 (390)
+...-..-... --.++++.+++.|+|||.+++.
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 65332111110 0247899999999999988764
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.15 E-value=4.6e-07 Score=79.41 Aligned_cols=90 Identities=10% Similarity=0.251 Sum_probs=67.3
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----CCceEEECCCCC-CCCCC-c
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG-D 287 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~-~~p~~-D 287 (390)
+..+++.+. ..+..+|||||||+|.++..+++... +++++|+ +.+++.+++. ++++++.+|+.+ +++.. +
T Consensus 18 i~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~ 94 (245)
T d1yuba_ 18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhhccchhhhhhhhhcccccccee
Confidence 356777766 67888999999999999999999865 5666665 6677776653 689999999998 77765 5
Q ss_pred EEEeccccccCChhHHHHHH
Q 016366 288 AILMKWILHCWDDDHCLRIL 307 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L 307 (390)
..+.++.=++.+.+-..+++
T Consensus 95 ~~vv~NLPY~Ist~il~~~l 114 (245)
T d1yuba_ 95 YKIVGNIPYHLSTQIIKKVV 114 (245)
T ss_dssp EEEEEECCSSSCHHHHHHHH
T ss_pred eeEeeeeehhhhHHHHHHHh
Confidence 55566666677765544444
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.14 E-value=8e-07 Score=79.40 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=71.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------------CCCceEEECCCCCCC--CCC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------------YAGVEHVGGNMFESV--PEG 286 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------------~~rv~~~~gd~~~~~--p~~ 286 (390)
.++.+||.||+|.|..+.++++ +|..+++.+|+ |.+++.+++ .+|++++.+|...-+ ...
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 5678999999999999999987 45567888887 889887763 368999999987521 223
Q ss_pred -cEEEeccccccCChhH---HHHHHHHHHHhCCCCcEEEEEe
Q 016366 287 -DAILMKWILHCWDDDH---CLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~---~~~~L~~~~~~L~pgG~lli~e 324 (390)
|+|++...- ...... ..++++.|++.|+|||.+++.-
T Consensus 150 yDvIi~D~~~-~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 150 FDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEEeCCC-CCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 999865432 222111 2478999999999999887643
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.10 E-value=8.5e-07 Score=79.04 Aligned_cols=98 Identities=19% Similarity=0.160 Sum_probs=73.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCC---CCCC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~---~p~~-D~i~ 290 (390)
.++.+||-||+|.|..+.++++..+..+++.+|+ |.+++.+++ .+|++++.+|...- .++. |+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 4678999999999999999998877778888887 888887765 37899999998762 2223 9998
Q ss_pred eccccccCChh--HHHHHHHHHHHhCCCCcEEEEE
Q 016366 291 MKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 291 ~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~ 323 (390)
....=..-+.. --.++++.+++.|+|||.++..
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence 66422111100 1337899999999999988764
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=1.2e-06 Score=78.48 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=73.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCC---CCCCC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPEG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~---~~p~~-D~i~ 290 (390)
+++++||-||+|.|..+.++++..+..+++.+|+ |.+++.+++ .+|++++.+|..+ ..++. |+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 5678999999999999999998777788888887 889888875 3799999999876 22333 9998
Q ss_pred eccccccCChhH---HHHHHHHHHHhCCCCcEEEEEe
Q 016366 291 MKWILHCWDDDH---CLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 291 ~~~vlh~~~d~~---~~~~L~~~~~~L~pgG~lli~e 324 (390)
+.- .+...... -.++++.|++.|+|||.+++.-
T Consensus 157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 157 TDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 753 22221111 2367999999999999988753
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.05 E-value=1.1e-06 Score=80.18 Aligned_cols=97 Identities=15% Similarity=0.090 Sum_probs=70.7
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCC---CC---CC-cEEEec
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VP---EG-DAILMK 292 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~---~p---~~-D~i~~~ 292 (390)
.+.+|||++||+|.++..+++. ..+++.+|+ +.+++.++++ ++++++++|.++. ++ .. |+|++.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 5689999999999999998865 347888887 7888887752 6799999998752 21 22 999875
Q ss_pred cccccCC-------hhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 293 WILHCWD-------DDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 293 ~vlh~~~-------d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
---.... -..-.++++.+.+.|+|||.|+++.-
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 3221111 11134689999999999999887543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.02 E-value=2.2e-06 Score=76.95 Aligned_cols=98 Identities=17% Similarity=0.180 Sum_probs=74.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCC---CCCC-C-cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPE-G-DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~---~~p~-~-D~i 289 (390)
+++.+||-||+|.|..+.++++..|-.+++.+|+ +.+++.+++ .+|++++.+|..+ ..++ . |+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 5678999999999999999999777667888887 888888875 3789999999876 2333 3 999
Q ss_pred EeccccccCChh---HHHHHHHHHHHhCCCCcEEEEEe
Q 016366 290 LMKWILHCWDDD---HCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 290 ~~~~vlh~~~d~---~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+.... ...... -...+++.+++.|+|||.+++.-
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 86432 111111 13478999999999999988753
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.01 E-value=6e-06 Score=70.02 Aligned_cols=85 Identities=13% Similarity=0.067 Sum_probs=58.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCCCcEEEeccccccCCh
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEGDAILMKWILHCWDD 300 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d 300 (390)
.+.+|||+|||+|.++..++.+.+ .+++++|+ +.+++.++++ .+++++.+|..+.....|+|+++=-++....
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~~~~ 124 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQRK 124 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSST
T ss_pred CCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCccccccc
Confidence 457999999999999998887654 57888887 7777776652 4678899988653333499998765543332
Q ss_pred hHHHHHHHHHHH
Q 016366 301 DHCLRILKNCYK 312 (390)
Q Consensus 301 ~~~~~~L~~~~~ 312 (390)
.....++....+
T Consensus 125 ~~d~~~l~~~~~ 136 (201)
T d1wy7a1 125 HADRPFLLKAFE 136 (201)
T ss_dssp TTTHHHHHHHHH
T ss_pred cccHHHHHHHHh
Confidence 222244554433
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.99 E-value=1.8e-06 Score=77.94 Aligned_cols=98 Identities=16% Similarity=0.121 Sum_probs=71.4
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCC---CCCC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~---~p~~-D~i~ 290 (390)
+++.+||-||+|.|..+.++++..|-.+++.+|+ +.+++.+++ .+|++++.+|..+- .+.. |+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 4678999999999999999998777678888888 888887765 27899999998762 2223 9998
Q ss_pred eccccccCC--hhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 291 MKWILHCWD--DDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 291 ~~~vlh~~~--d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
+...-..-+ .--...+++.+++.|+|||.++..
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 754321111 111357899999999999998865
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.99 E-value=2e-06 Score=74.33 Aligned_cols=97 Identities=16% Similarity=0.156 Sum_probs=73.8
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCC---------CCC
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESV---------PEG 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~---------p~~ 286 (390)
..++++|||||+++|..+..+++..| +.+++.+|. +...+.|++ .++|+++.||+.+-+ ...
T Consensus 57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~ 136 (227)
T d1susa1 57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 136 (227)
T ss_dssp HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence 45689999999999999999999886 578888887 666666664 268999999986522 112
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|+|+... .. ......+..+.+.|+|||.+++-+..
T Consensus 137 fD~iFiDa----~k-~~y~~~~e~~~~ll~~gGiii~DNvl 172 (227)
T d1susa1 137 YDFIFVDA----DK-DNYLNYHKRLIDLVKVGGVIGYDNTL 172 (227)
T ss_dssp BSEEEECS----CS-TTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred eeEEEecc----ch-hhhHHHHHHHHhhcCCCcEEEEccCC
Confidence 9998763 22 33558899999999999987755443
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.95 E-value=3.1e-06 Score=76.23 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=72.2
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCCCCC------C-CcE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESVP------E-GDA 288 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~~~p------~-~D~ 288 (390)
...+.+|||+.||+|.++..++... .+++.+|. +.+++.|+++ .+++++++|+++.+. . .|+
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~G--A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhCC--CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 4567899999999999999988764 57899998 7788887752 369999999976321 2 299
Q ss_pred EEec---cccc----cCC-hhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 289 ILMK---WILH----CWD-DDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 289 i~~~---~vlh----~~~-d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|++. +.-. .+. ......+++.+.+.|+|||.+++....
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 9974 1111 011 233456778899999999987766543
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=5e-06 Score=69.41 Aligned_cols=93 Identities=12% Similarity=0.024 Sum_probs=66.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCCC--C-CCC-cEEEecccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFES--V-PEG-DAILMKWIL 295 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~~--~-p~~-D~i~~~~vl 295 (390)
...+|||++||+|.++.+.+.+... +++.+|. +.+++.+++ ..+++++.+|.++. . ... |+|++.=-.
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 3578999999999999999988754 7888887 667776654 25788999998762 2 223 999987554
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCcEEEEE
Q 016366 296 HCWDDDHCLRILKNCYK--AVPGNGKVIVM 323 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~--~L~pgG~lli~ 323 (390)
.. ....+++..+.+ .|+|+|.+++-
T Consensus 122 ~~---~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 122 RR---GLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp ST---TTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cc---chHHHHHHHHHHCCCCCCCeEEEEE
Confidence 32 223456666655 58999987763
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=2.9e-05 Score=65.72 Aligned_cols=92 Identities=17% Similarity=0.240 Sum_probs=70.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-h---HHHhhCCC---CCCceEEECCCCCCCCC--CcEEEecccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P---HVVQDAPS---YAGVEHVGGNMFESVPE--GDAILMKWILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~---~~~~~a~~---~~rv~~~~gd~~~~~p~--~D~i~~~~vlh~ 297 (390)
...+++|||+|.|.-+.-++-.+|+.+++.+|. . ..++.+.. ..+++.++..+++..+. .|+|+++.+
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~--- 141 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF--- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS---
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhh---
Confidence 457999999999999999999999999999995 2 23333222 36899999998873333 399888764
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.+ ...++.-+...++++|++++.-
T Consensus 142 -~~--~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 142 -AS--LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -SS--HHHHHHHHTTSEEEEEEEEEEE
T ss_pred -cC--HHHHHHHHHHhcCCCcEEEEEC
Confidence 33 3378999999999999988754
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.83 E-value=2.6e-05 Score=66.57 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=71.4
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCCCCceEEECCCCCCCC-CC-cEEEe
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP-EG-DAILM 291 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p-~~-D~i~~ 291 (390)
..+++.+. ...+.+|||.|||+|.++..+.++.+. ..++++|+ +..++.++ +...+.+|++...+ .. |++++
T Consensus 9 ~~m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~---~~~~~~~~~~~~~~~~~fd~ii~ 84 (223)
T d2ih2a1 9 DFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP---WAEGILADFLLWEPGEAFDLILG 84 (223)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---TEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc---cceeeeeehhccccccccceecc
Confidence 34455444 556789999999999999999887655 56788887 44433332 35778888876332 33 88887
Q ss_pred ccccccCC---h------------------------hHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 292 KWILHCWD---D------------------------DHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 292 ~~vlh~~~---d------------------------~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
+-.+.... . .-...++.++.+.|+|||++.++-+
T Consensus 85 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 85 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 75543211 0 0123567899999999999887654
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.81 E-value=3.1e-06 Score=76.99 Aligned_cols=99 Identities=10% Similarity=0.059 Sum_probs=69.9
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCCCC------CCC-cE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESV------PEG-DA 288 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~~~------p~~-D~ 288 (390)
...+.+|||+.||+|.++..++... ..+++.+|+ +..++.++++ .+++++++|.++.+ ... |+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 3467899999999999998877643 346788887 6677766541 47899999997632 122 99
Q ss_pred EEeccc--------cccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 289 ILMKWI--------LHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 289 i~~~~v--------lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|++.=- ++.. ...-.++++.+.+.|+|||.|+++..
T Consensus 221 Ii~DPP~f~~~~~~~~~~-~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSV-SKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp EEECCCCC-----CCCCH-HHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEEcChhhccchhHHHHH-HHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 987411 1111 12245799999999999999887553
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=97.76 E-value=5.8e-06 Score=68.24 Aligned_cols=95 Identities=19% Similarity=0.099 Sum_probs=58.8
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---CC-C-CcEEEe
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP-E-GDAILM 291 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~p-~-~D~i~~ 291 (390)
...+.+|||+|||+|.++.+.+.+. .+++.+|. +.+++.++++ .++....+|.+.+ .. . .|+|++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence 3467899999999999999988875 46777887 8888877652 3343333433211 11 2 299988
Q ss_pred ccccccCCh-hHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 292 KWILHCWDD-DHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 292 ~~vlh~~~d-~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.=-++. .. +....++. ...|+|||.+++..
T Consensus 117 DPPY~~-~~~~~l~~l~~--~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 117 APPYAM-DLAALFGELLA--SGLVEAGGLYVLQH 147 (171)
T ss_dssp CCCTTS-CTTHHHHHHHH--HTCEEEEEEEEEEE
T ss_pred cccccc-CHHHHHHHHHH--cCCcCCCeEEEEEe
Confidence 533221 21 22222332 25799999877643
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.75 E-value=2.2e-05 Score=71.54 Aligned_cols=101 Identities=10% Similarity=0.129 Sum_probs=72.1
Q ss_pred cCCcceEEEEcCCccHHHHHHHhh-----CCCCeEEEecc-hHHHhhCCC-----CCCceEEECCCCCCCCC--CcEEEe
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSK-----YPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFESVPE--GDAILM 291 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~-----~p~~~~~~~Dl-~~~~~~a~~-----~~rv~~~~gd~~~~~p~--~D~i~~ 291 (390)
.....+|+|.|||+|.++..+..+ .++.+.+++|+ +.+++.|+. .....+..+|.....+. .|+|++
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~ 194 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS 194 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Confidence 456679999999999999998754 34557888887 767776653 25678888888774443 399998
Q ss_pred ccccccCChhH----------------HHHHHHHHHHhCCCCcEEEEEec
Q 016366 292 KWILHCWDDDH----------------CLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 292 ~~vlh~~~d~~----------------~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
+=-+......+ -..++.++.+.|+|||+++++-+
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 85543222111 12379999999999999877554
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.73 E-value=6.9e-05 Score=62.00 Aligned_cols=109 Identities=16% Similarity=0.204 Sum_probs=77.7
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecchHHHhhCCCCCCceEEECCCCC-CC-------
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SV------- 283 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~-~~------- 283 (390)
+.+.+|.+.+.-+.+..+||||||+.|.++..+.+.. +..+++++|+..+ ...+++.++.+|+.+ ..
T Consensus 8 fKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~i~~~~~~~~d~~~~~~~~~~~~~ 83 (180)
T d1ej0a_ 8 FKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DPIVGVDFLQGDFRDELVMKALLER 83 (180)
T ss_dssp HHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CCCTTEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cccCCceEeecccccchhhhhhhhh
Confidence 3345677777756788899999999999999888754 5578899997432 335778999999976 21
Q ss_pred -CC--CcEEEeccccccCC----hh-----HHHHHHHHHHHhCCCCcEEEEEec
Q 016366 284 -PE--GDAILMKWILHCWD----DD-----HCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 284 -p~--~D~i~~~~vlh~~~----d~-----~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
.. .|+|++......-. |+ -+...|.-+.+.|++||.+++=-+
T Consensus 84 ~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 84 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 12 29998776543322 11 144577788899999999887443
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.72 E-value=2.5e-05 Score=64.78 Aligned_cols=109 Identities=18% Similarity=0.224 Sum_probs=79.4
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC--CCCceEEECCCCC-C-----CC-
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS--YAGVEHVGGNMFE-S-----VP- 284 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~rv~~~~gd~~~-~-----~p- 284 (390)
..++++.+. ..++..++|..+|.|.++..++++. .+++++|. |.+++.+++ .+++.++.+++.+ . ..
T Consensus 7 l~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~~--~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~ 83 (182)
T d1wg8a2 7 YQEALDLLA-VRPGGVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGV 83 (182)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhccc--CcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCC
Confidence 456777776 6778899999999999999999974 57888888 888887765 3789999998865 2 11
Q ss_pred CC-cEEEeccccccC----Ch---hHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 285 EG-DAILMKWILHCW----DD---DHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 285 ~~-D~i~~~~vlh~~----~d---~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.. |.|++.--+..+ ++ ......|....+.|+|||++++..+-
T Consensus 84 ~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 84 ERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp SCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred CccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 12 877764322110 00 12345789999999999999987763
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.00017 Score=63.68 Aligned_cols=94 Identities=14% Similarity=0.250 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC-------CCCceEEECCCCC-CCC
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFE-SVP 284 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-------~~rv~~~~gd~~~-~~p 284 (390)
..+..+++... .....+|||||+|.|.++..++++...+.++..| +..++..++ .++++++.+|+.+ ++|
T Consensus 8 ~i~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D-~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~ 85 (278)
T d1zq9a1 8 LIINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD-PRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 85 (278)
T ss_dssp HHHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESC-HHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEc-cchhHHHHHHHhhhccccchhhhHHHHhhhhhh
Confidence 34556777665 6677899999999999999999998766666666 555444332 2579999999998 676
Q ss_pred CCcEEEeccccccCChhHHHHHHHHHHHh
Q 016366 285 EGDAILMKWILHCWDDDHCLRILKNCYKA 313 (390)
Q Consensus 285 ~~D~i~~~~vlh~~~d~~~~~~L~~~~~~ 313 (390)
..+.|+.+- |-.-...++.++...
T Consensus 86 ~~~~vV~NL-----PY~Iss~il~~~~~~ 109 (278)
T d1zq9a1 86 FFDTCVANL-----PYQISSPFVFKLLLH 109 (278)
T ss_dssp CCSEEEEEC-----CGGGHHHHHHHHHHC
T ss_pred hhhhhhcch-----HHHHHHHHHHHHHhh
Confidence 656655443 333344566665544
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.56 E-value=0.00029 Score=60.34 Aligned_cols=109 Identities=17% Similarity=0.046 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHH---HhhCCCC---CCceEEECCCCCCCC-C
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHV---VQDAPSY---AGVEHVGGNMFESVP-E 285 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~---~~~a~~~---~rv~~~~gd~~~~~p-~ 285 (390)
+...++.+.+- +.+..+|+|+|||.|..+..++.+.+...+.++++..- .....+. +-+++...+.....+ .
T Consensus 53 ~Kl~~~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~ 131 (257)
T d2p41a1 53 AKLRWFVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPE 131 (257)
T ss_dssp HHHHHHHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHHHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCC
Confidence 33456666664 67788999999999999999998866556666665111 1111111 225666654433333 3
Q ss_pred -CcEEEeccccccCCh-----hHHHHHHHHHHHhCCCCcEEEEE
Q 016366 286 -GDAILMKWILHCWDD-----DHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 286 -~D~i~~~~vlh~~~d-----~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.|+|+|.-.=+ -++ +...++|.-+.+.|+|||.+++-
T Consensus 132 ~~D~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvK 174 (257)
T d2p41a1 132 RCDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 174 (257)
T ss_dssp CCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred cCCEEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence 39999885432 221 22446788888999999988763
|
| >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator IclR, N-terminal domain domain: Transcriptional regulator IclR, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.55 E-value=3e-05 Score=54.40 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=47.5
Q ss_pred hChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 47 lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
+.|++.+..+ +|+|+.|||+++|+ ++..+.|+|..|+..|++.+ ..+++|++++..
T Consensus 8 l~IL~~~a~~~~~~s~~eia~~~~~----~~st~~rll~tL~~~g~l~~---~~~g~y~lG~~l 64 (75)
T d1mkma1 8 FEILDFIVKNPGDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLR---KKDKRYVPGYKL 64 (75)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEE---CTTSCEEECTHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE---CCCCCEeecHHH
Confidence 4567778765 48999999999999 99999999999999999997 346789988743
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.53 E-value=0.00013 Score=62.65 Aligned_cols=96 Identities=13% Similarity=0.088 Sum_probs=64.4
Q ss_pred CcceEEEEcCCccHHHHHHHh----hCCCCeEEEecc-hHHHhhCC-CCCCceEEECCCCCC--C---CC-C-cEEEecc
Q 016366 227 NVERLVDVGGGFGVTLSMITS----KYPQIKAVNFDL-PHVVQDAP-SYAGVEHVGGNMFES--V---PE-G-DAILMKW 293 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~----~~p~~~~~~~Dl-~~~~~~a~-~~~rv~~~~gd~~~~--~---p~-~-D~i~~~~ 293 (390)
++.+|||||++.|..+..++. ..++.+++++|+ +....... ..++|+++.+|..++ + .. . |.|+.-.
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~ 159 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 159 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence 368999999999987765553 246788999997 33333222 348899999997652 1 12 2 8777655
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
. |.. +.. ..-+ .....|+|||+++|-|..
T Consensus 160 ~-H~~-~~v-~~~~-~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 160 A-HAN-TFN-IMKW-AVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp S-CSS-HHH-HHHH-HHHHTCCTTCEEEECSCH
T ss_pred C-cch-HHH-HHHH-HHhcccCcCCEEEEEcCC
Confidence 4 553 322 2334 466899999999887764
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.52 E-value=5.3e-05 Score=62.88 Aligned_cols=93 Identities=10% Similarity=0.018 Sum_probs=66.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCC------CCC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV------PEG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~------p~~-D~i~ 290 (390)
-.+.+|||+.||+|.++.+.+.+... +++.+|. +.+++.++++ .+++++++|.++.+ ... |+|+
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 35689999999999999999998643 6777776 6666666542 57999999986521 122 9998
Q ss_pred eccccccCChhHHHHHHHHHHH--hCCCCcEEEE
Q 016366 291 MKWILHCWDDDHCLRILKNCYK--AVPGNGKVIV 322 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~--~L~pgG~lli 322 (390)
+.=-++. .....+|..+.+ .|+|+|.+++
T Consensus 119 lDPPY~~---~~~~~~l~~i~~~~~L~~~giIi~ 149 (182)
T d2fhpa1 119 LDPPYAK---QEIVSQLEKMLERQLLTNEAVIVC 149 (182)
T ss_dssp ECCCGGG---CCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred echhhhh---hHHHHHHHHHHHCCCCCCCEEEEE
Confidence 7644322 223466777755 5899997664
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.47 E-value=0.0019 Score=58.63 Aligned_cols=151 Identities=14% Similarity=0.104 Sum_probs=93.0
Q ss_pred CcceEEEEcCCccHHHH-------HHH-hh--------CCCCeEEEecchH-----HHhhCCC---CC-C--ceEEECCC
Q 016366 227 NVERLVDVGGGFGVTLS-------MIT-SK--------YPQIKAVNFDLPH-----VVQDAPS---YA-G--VEHVGGNM 279 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~-------~l~-~~--------~p~~~~~~~Dl~~-----~~~~a~~---~~-r--v~~~~gd~ 279 (390)
+.-+|.|+||.+|..+. ... ++ -|.+++..-|+|. ....... .. + +..++|+|
T Consensus 51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF 130 (359)
T d1m6ex_ 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence 44689999999997763 222 11 3566778888853 2222111 11 1 55688999
Q ss_pred CC-CCCCC--cEEEeccccccCCh-------------------h------------HHHHHHHHHHHhCCCCcEEEEEec
Q 016366 280 FE-SVPEG--DAILMKWILHCWDD-------------------D------------HCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 280 ~~-~~p~~--D~i~~~~vlh~~~d-------------------~------------~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
.+ -+|.. |++++++.||+++. + +-..+|+.=.+=|.|||++++.-.
T Consensus 131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 98 68876 99999999998752 1 233578887888999999999887
Q ss_pred ccCCCCCcc------hHHhhhhhhhhhhhhhcCC---------CcccCHHHHHHHHHHCC-CCeeEEE
Q 016366 326 IVPEIPEVS------SAARETSLLDVLLMTRDGG---------GRERTKKEYTELAIAAG-FKGINFA 377 (390)
Q Consensus 326 ~~~~~~~~~------~~~~~~~~~d~~~~~~~~~---------g~~~t~~e~~~ll~~aG-f~~~~~~ 377 (390)
..++..... +..-...+.|+.-...... --.++.+|+++.+++.| |.+.+..
T Consensus 211 gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e 278 (359)
T d1m6ex_ 211 GRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp ECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred ccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeE
Confidence 765432111 0001112222221111100 12468999999999877 6666553
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=6.6e-05 Score=65.53 Aligned_cols=70 Identities=10% Similarity=0.221 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC----CCCceEEECCCCC-CCC
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS----YAGVEHVGGNMFE-SVP 284 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~----~~rv~~~~gd~~~-~~p 284 (390)
..+..+++... ......|||||||.|.++..++++...+.++.+| +..++..++ .++++++.+|+.+ +++
T Consensus 8 ~~~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD-~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~ 82 (252)
T d1qyra_ 8 FVIDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLDQLTVIELD-RDLAARLQTHPFLGPKLTIYQQDAMTFNFG 82 (252)
T ss_dssp HHHHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCC-HHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred HHHHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccCCceEEEEec-cchhHHHHHHhhhccchhHHhhhhhhhccc
Confidence 44556777766 6678899999999999999999987665555555 666665543 3689999999987 543
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=97.30 E-value=0.00096 Score=59.38 Aligned_cols=99 Identities=12% Similarity=0.108 Sum_probs=75.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC---------CCCceEEECCCCCCCC----------CC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFESVP----------EG 286 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~---------~~rv~~~~gd~~~~~p----------~~ 286 (390)
.+...|+.+|||-=.....+ ...++++++.+|+|++++.-++ ..+..++..|+.++++ ..
T Consensus 88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 45567888999988777665 3467899999999998874332 2346778888875422 11
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
-++++-.++++++.+++.++|+.+.+...||+.|++ |..
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~-d~~ 206 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETS 206 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECC
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEE-Eec
Confidence 577888899999999999999999999999998664 443
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.20 E-value=0.00016 Score=62.28 Aligned_cols=93 Identities=17% Similarity=0.267 Sum_probs=69.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-h---HHHhhCCC---CCCceEEECCCCC-C----CCCC-cEEEec
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P---HVVQDAPS---YAGVEHVGGNMFE-S----VPEG-DAILMK 292 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~---~~~~~a~~---~~rv~~~~gd~~~-~----~p~~-D~i~~~ 292 (390)
....+++|||+|.|--+.-++-.+|+.+++.+|. . ..++.+.+ ..++.++.+.+++ . .... |+|+++
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 4567999999999999999999999999999995 2 23333322 4678888877654 1 2223 999988
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.+- + ...++.-+...+++||++++.-
T Consensus 149 Ava----~--l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 149 AVA----R--LSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp CCS----C--HHHHHHHHGGGEEEEEEEEEEE
T ss_pred hhh----C--HHHHHHHHhhhcccCCEEEEEC
Confidence 643 3 3378999999999999988744
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.96 E-value=0.01 Score=53.22 Aligned_cols=105 Identities=13% Similarity=0.222 Sum_probs=83.4
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC---------------------------CCCceEEECC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------------------------YAGVEHVGGN 278 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~---------------------------~~rv~~~~gd 278 (390)
.+...|+-+|||.=.....+...+|+++++.+|.|++++.-++ .++..++..|
T Consensus 95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D 174 (328)
T d1rjda_ 95 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 174 (328)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence 3456899999999988888888899999999999888763221 2568889999
Q ss_pred CCC-CC---------C-CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCC
Q 016366 279 MFE-SV---------P-EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP 331 (390)
Q Consensus 279 ~~~-~~---------p-~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~ 331 (390)
+.+ .. . .. -++++--++.+++++++.++|+.+.+..+ +|.+++.|++.+..+
T Consensus 175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~~~~p 238 (328)
T d1rjda_ 175 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIGGSQP 238 (328)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCCCST
T ss_pred CCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCCCCCC
Confidence 876 21 1 11 58899999999999999999999999885 577888999865433
|
| >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Hypothetical protein PH1061 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.87 E-value=0.00015 Score=53.69 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=54.5
Q ss_pred HHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCcccccc
Q 016366 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYF 112 (390)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l 112 (390)
++..-.++.|+..|..+|++|+.|||+.+++ .+..+.+.|+.|...|+|.......++ .|++|+.+...
T Consensus 12 ~l~~p~r~~IL~~L~~~~~~~~~eLa~~l~i----s~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~~ 83 (100)
T d1ub9a_ 12 ILGNPVRLGIMIFLLPRRKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEE 83 (100)
T ss_dssp HHHSHHHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHH
T ss_pred hcCCHHHHHHHHHhccCCCeeHHHHHHHHhh----ccccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHHHH
Confidence 4444557888899976689999999999999 999999999999999999864322222 38888877543
|
| >d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Cadmium efflux system accessory protein CadC species: Staphylococcus aureus [TaxId: 1280]
Probab=96.61 E-value=0.00077 Score=50.44 Aligned_cols=66 Identities=21% Similarity=0.186 Sum_probs=51.1
Q ss_pred HHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
..+|.--.++.|+..|...|+.++.|||+.+|+ .+..+.+.|+.|...|+|.....+..-.|++++
T Consensus 25 ~kaLadp~Rl~Il~~L~~~~~~~v~ela~~l~~----s~s~vS~HL~~L~~aGlv~~~r~G~~~~Y~l~~ 90 (108)
T d1u2wa1 25 LKAIADENRAKITYALCQDEELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKEGKLALYSLGD 90 (108)
T ss_dssp HHHHHSHHHHHHHHHHHHSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----CCEEEESC
T ss_pred HHHhCCHHHHHHHHHHHhCCCccHHHHHHHHcc----ChhHHHHHHHHHHHCCeeEEEEECCEEEEEECH
Confidence 456666778888888865579999999999999 999999999999999999874222222476654
|
| >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Biotin repressor, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.55 E-value=0.00084 Score=44.90 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=45.4
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecC
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t 106 (390)
.++.|+..|.+++.+|.+|||+++|+ ....+.+-+..|...|+..++ ..+..|++.
T Consensus 6 ~~~~iL~~L~~~~~~s~~eLa~~l~v----S~~ti~r~i~~L~~~G~~I~~--~~g~GY~L~ 61 (63)
T d1biaa1 6 VPLKLIALLANGEFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFT--VPGKGYSLP 61 (63)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEE--ETTTEEECS
T ss_pred HHHHHHHHHHHCCcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCcEEE--eCCCeEEeC
Confidence 34568888887668999999999999 999999999999999985443 234468764
|
| >d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: SmtB repressor species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]
Probab=96.51 E-value=0.00078 Score=49.46 Aligned_cols=64 Identities=19% Similarity=0.315 Sum_probs=49.7
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
++|.--.++.|+..|.. |+.++.|||+.+|+ .+..+.+.|+.|...|+|.....+..-.|++++
T Consensus 18 kaL~~p~Rl~Il~~L~~-~~~~v~ela~~l~i----s~stvS~HL~~L~~aglV~~~r~G~~~~Y~l~~ 81 (98)
T d1r1ta_ 18 AVLADPNRLRLLSLLAR-SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQD 81 (98)
T ss_dssp HHHCCHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESS
T ss_pred HHhCCHHHHHHHHHHHc-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEECCEEEEEECh
Confidence 34555667778888876 69999999999999 999999999999999999864222222466553
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.40 E-value=0.0036 Score=58.55 Aligned_cols=111 Identities=19% Similarity=0.129 Sum_probs=73.0
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC-------------CeEEEecc-hHHHhhCCC--------CCC
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-------------IKAVNFDL-PHVVQDAPS--------YAG 271 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~-------------~~~~~~Dl-~~~~~~a~~--------~~r 271 (390)
++..+++.+. .....+|+|-.||+|.++..+.++..+ ....++|+ +.+...++- .+.
T Consensus 150 Iv~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~ 228 (425)
T d2okca1 150 LIQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 228 (425)
T ss_dssp HHHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred hhHhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcccc
Confidence 3444555555 456789999999999999888765321 23566665 555444432 245
Q ss_pred ceEEECCCCCCCCC--CcEEEeccccccCC---------------hhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 272 VEHVGGNMFESVPE--GDAILMKWILHCWD---------------DDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 272 v~~~~gd~~~~~p~--~D~i~~~~vlh~~~---------------d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
..+..+|.++..+. .|+|+++=-+..-. ...-..++.++.+.|+|||++.++-+
T Consensus 229 ~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 229 SPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp CSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 67888998874433 39998875553211 01123589999999999999887644
|
| >d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Metal-sensing transcriptional repressor CzrA species: Staphylococcus aureus [TaxId: 1280]
Probab=96.40 E-value=0.0009 Score=48.69 Aligned_cols=64 Identities=22% Similarity=0.326 Sum_probs=50.2
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
.+|.--.++.|+..|.. |+.++.||++.+|+ .+..+.+.|+.|...|+|.....+..-.|+++.
T Consensus 13 kaL~d~~Rl~Il~~L~~-~~~~v~el~~~l~~----s~~~vS~HL~~L~~~glv~~~r~G~~~~Y~l~~ 76 (94)
T d1r1ua_ 13 KALGDYNRIRIMELLSV-SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDD 76 (94)
T ss_dssp HHTCSHHHHHHHHHHHH-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESS
T ss_pred HHhCCHHHHHHHHHHHc-CCccHHHHHHHHCC----CHHHHHHHHHHHHHCCceEEEEECCEEEEEECc
Confidence 34555567778888887 69999999999999 999999999999999999874221122377664
|
| >d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein ywnA species: Bacillus subtilis [TaxId: 1423]
Probab=96.39 E-value=0.002 Score=49.56 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=42.5
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcc
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~ 108 (390)
++-.|+.++++|.++||+.+++ ++..++++|+.|...|+|...++ .+|.| +++.
T Consensus 9 ~L~~la~~~~~ss~~IA~~~~~----~~~~v~kIl~~L~~aglV~s~rG-~~GGy-Lar~ 62 (127)
T d1xd7a_ 9 ILSLISMDEKTSSEIIADSVNT----NPVVVRRMISLLKKADILTSRAG-VPGAS-LKKD 62 (127)
T ss_dssp HHHHHHTCSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCSS-SSSCE-ESSC
T ss_pred HHHHHhcCCCCCHHHHHHHhCc----CHHHHHHHHHHHHHhCcccccCC-CCCcc-ccCC
Confidence 3455565569999999999999 99999999999999999986433 33446 6653
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.28 E-value=0.0032 Score=57.33 Aligned_cols=99 Identities=21% Similarity=0.254 Sum_probs=65.3
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCCCCC----
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFESVP---- 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~~~p---- 284 (390)
..+++.+. ..+..+|+|+-||+|.++..++++.. +++++|. +..++.|++ ..+++|+.+|.++.++
T Consensus 202 ~~v~~~~~-~~~~~~vlDLycG~G~fsl~La~~~~--~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~ 278 (358)
T d1uwva2 202 ARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 278 (358)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHHhhc-cCCCceEEEecccccccchhcccccc--EEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhh
Confidence 34444444 56778999999999999999998764 5677776 777777764 3689999999877432
Q ss_pred --CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 285 --EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 285 --~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.. |+|++.=-=-- +.++++.+.+. +|.-.++|+
T Consensus 279 ~~~~~d~vilDPPR~G-----~~~~~~~l~~~-~~~~ivYVS 314 (358)
T d1uwva2 279 AKNGFDKVLLDPARAG-----AAGVMQQIIKL-EPIRIVYVS 314 (358)
T ss_dssp GTTCCSEEEECCCTTC-----CHHHHHHHHHH-CCSEEEEEE
T ss_pred hhccCceEEeCCCCcc-----HHHHHHHHHHc-CCCEEEEEe
Confidence 12 88776522111 22445555543 565555553
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.24 E-value=0.0017 Score=53.44 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=61.9
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCC----CCCC--CcEEEe
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE----SVPE--GDAILM 291 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~----~~p~--~D~i~~ 291 (390)
...++||+-||+|.++.+.+.+... +++.+|. +.+++..+++ ....++..|..+ .... .|+|++
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred ccceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 3468999999999999999998753 7888886 5555544431 245666666543 1112 299988
Q ss_pred ccccccCChhHHHHHHHHHHH--hCCCCcEEEEE
Q 016366 292 KWILHCWDDDHCLRILKNCYK--AVPGNGKVIVM 323 (390)
Q Consensus 292 ~~vlh~~~d~~~~~~L~~~~~--~L~pgG~lli~ 323 (390)
.=-... .....+|..+.+ .|+++|.+++-
T Consensus 122 DPPY~~---~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 122 DPPFHF---NLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp CCCSSS---CHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred chhHhh---hhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 754432 234467777765 68999976653
|
| >d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Transcriptional regulator VC2007 N-terminal domain species: Vibrio cholerae [TaxId: 666]
Probab=96.05 E-value=0.002 Score=44.04 Aligned_cols=44 Identities=18% Similarity=0.395 Sum_probs=40.6
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
..|+..|..+|++|..|||+.+|+ .+..+.++++.|...|+|.+
T Consensus 9 ~~Il~~l~~~g~~sr~eLa~~~gl----S~~Tv~~~l~~L~~~Glv~e 52 (71)
T d1z05a1 9 GRVYKLIDQKGPISRIDLSKESEL----APASITKITRELIDAHLIHE 52 (71)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 357888888889999999999999 99999999999999999985
|
| >d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator YusO species: Bacillus subtilis [TaxId: 1423]
Probab=95.87 E-value=0.0083 Score=46.77 Aligned_cols=65 Identities=22% Similarity=0.263 Sum_probs=51.3
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
.++.++..|..+|+.|+.+||+.+++ ++..+.+.++.|+..|+|.+.....+.+ +.+|+.+..+.
T Consensus 36 ~q~~iL~~l~~~~~~t~~~la~~~~i----~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~G~~~~ 103 (143)
T d1s3ja_ 36 AQLFVLASLKKHGSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 103 (143)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHhhhheeeeecCCCCceEEEECHHHHHHH
Confidence 34446777777679999999999999 9999999999999999998754433433 67777776555
|
| >d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator TM0816 species: Thermotoga maritima [TaxId: 2336]
Probab=95.81 E-value=0.0024 Score=49.85 Aligned_cols=66 Identities=18% Similarity=0.144 Sum_probs=53.2
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.-++.++..|..+|++|+.+||+++++ ++..+.+.++.|+..|+|.+.....+. ..++|+.+..+.
T Consensus 32 ~~q~~iL~~l~~~~~~t~~~La~~l~i----~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~ 100 (140)
T d2etha1 32 TTELYAFLYVALFGPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 100 (140)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeeecccccchhhhhcCHHHHHHH
Confidence 345667778887789999999999999 999999999999999999876543343 367777776554
|
| >d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal fragment of elongation factor SelB domain: C-terminal fragment of elongation factor SelB species: Moorella thermoacetica [TaxId: 1525]
Probab=95.78 E-value=0.0057 Score=40.78 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=40.9
Q ss_pred ChhHHHhhcC--CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCccee
Q 016366 48 GVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYA 104 (390)
Q Consensus 48 glfd~L~~~g--~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~ 104 (390)
.|.+.+.+.| |.++.|||+.+|+ ++..++.+|+.|+..|.+.. -.++.|.
T Consensus 11 ~I~~~~~~~g~~PP~vrdl~~~l~~----~e~~~~~lL~~l~~~G~lvk---I~~d~yf 62 (64)
T d1lvaa3 11 DLEDKYRVSRWQPPSFKEVAGSFNL----DPSELEELLHYLVREGVLVK---INDEFYW 62 (64)
T ss_dssp HHHHHHHHHTTSCCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEE---SSSSBEE
T ss_pred HHHHHHHHcCCCCCcHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEE---ecccccc
Confidence 3444555444 9999999999999 99999999999999999987 4566664
|
| >d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Mlc protein N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.73 E-value=0.0037 Score=42.58 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=40.8
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
..|+..|..+|++|..|||+.+|+ ....+.++++.|...|+|.+
T Consensus 8 ~~Il~~i~~~g~~sr~eLa~~~gL----S~~Tvs~iv~~L~~~glv~e 51 (70)
T d1z6ra1 8 GAVYRLIDQLGPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQE 51 (70)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence 347888988899999999999999 99999999999999999986
|
| >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Ta1064 (RFK), N-terminal domain species: Thermoplasma acidophilum [TaxId: 2303]
Probab=95.72 E-value=0.0016 Score=46.30 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=43.3
Q ss_pred hhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 54 AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 54 ~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
...+++|..+||+++++ .+..+.++|+.|...|+|.+..+...-.|.+|+.+..+.
T Consensus 17 ~~~~~lt~~eLa~~l~i----~~~~vs~~l~~Le~~GlV~r~~D~R~~~i~LT~~G~~~l 72 (85)
T d3ctaa1 17 SNRAYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVL 72 (85)
T ss_dssp SSEEECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred cCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeeecccccccceECHHHHHHH
Confidence 33358999999999999 999999999999999999974222122367777766444
|
| >d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical protein AF2008 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.55 E-value=0.0039 Score=46.46 Aligned_cols=46 Identities=15% Similarity=0.392 Sum_probs=40.4
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+..++..|..+|+.|+.|||+.+|+ ++..+.+.|+-|...|+|.+.
T Consensus 22 e~~v~~~L~~~g~~t~~eia~~~~i----~~~~v~~~l~~L~~~GlV~r~ 67 (109)
T d1sfxa_ 22 DVRIYSLLLERGGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhCC----CcchHHHHHHHHHhCCCEEEE
Confidence 4456677776789999999999999 999999999999999999763
|
| >d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator MgrA species: Staphylococcus aureus [TaxId: 1280]
Probab=95.43 E-value=0.0043 Score=48.08 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=52.5
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+++.|..+||+.+++ ++..+.++++-|+..|+|.+...+.++ .+++|+.+..+.
T Consensus 34 ~~q~~vL~~i~~~~~~t~~~la~~l~~----~~~~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~lT~~G~~~~ 102 (136)
T d2bv6a1 34 YPQFLVLTILWDESPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR 102 (136)
T ss_dssp HHHHHHHHHHHHSSEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEEeecCCcccchhhccCHHHHHHH
Confidence 345667777877789999999999999 999999999999999999875543443 356787776554
|
| >d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=95.41 E-value=0.0054 Score=40.61 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=39.2
Q ss_pred ChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 48 glfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.|+..|.+ ||+|..|||+.+|+ ....+.++++.|...|+|.+.
T Consensus 3 ~Il~~i~~-~pisr~eLa~~~gl----s~~TVs~~v~~L~~~GlV~e~ 45 (62)
T d2hoea1 3 RILKRIMK-SPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEE 45 (62)
T ss_dssp CSHHHHHH-SCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHH-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC
Confidence 57788887 69999999999999 999999999999999999863
|
| >d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator TM0710 species: Thermotoga maritima [TaxId: 2336]
Probab=95.38 E-value=0.0034 Score=48.93 Aligned_cols=65 Identities=14% Similarity=0.207 Sum_probs=50.9
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCcccccccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~~ 114 (390)
+..++..|..+|+.|+.+||+.+++ ++..+.+.++-|+..|+|.....+.++ .+.+|+.+..+..
T Consensus 32 q~~iL~~i~~~~~~t~~~la~~l~i----~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~ 99 (139)
T d2a61a1 32 QFDILQKIYFEGPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE 99 (139)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCC----CcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHH
Confidence 4455666666679999999999999 999999999999999999875443332 3777887776553
|
| >d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: MexR repressor species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.25 E-value=0.0057 Score=47.72 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=51.2
Q ss_pred HHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
+..++.++..|..++++|+.+||+.+++ ++..+.+.++.|+..|+|.+.....+++ +.+|+.+..+.
T Consensus 35 t~~q~~vL~~l~~~~~~t~~~la~~l~~----~~~~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~G~~~~ 104 (141)
T d1lnwa_ 35 TPPDVHVLKLIDEQRGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH 104 (141)
T ss_dssp CHHHHHHHHHHHSSTTCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCc----cHhHHHHHHHHHHHhhceeeeccCCCCcchhhccCHHHHHHH
Confidence 3445666777777678999999999999 9999999999999999998754433332 56666665443
|
| >d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: PF1790-like domain: Transcriptional regulatory protein PF1790 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.18 E-value=0.007 Score=50.00 Aligned_cols=66 Identities=14% Similarity=0.186 Sum_probs=49.6
Q ss_pred HHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC-----cceecCcccc
Q 016366 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE-----RLYALNPVSK 110 (390)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~-----~~y~~t~~s~ 110 (390)
+|.--.+..|++.|.+ ||+|+.+||+.+|+ .+..+.+.|+.|...|+|.......+ ..|+++..+.
T Consensus 11 ~l~~~~R~~Il~~L~~-~~~~~~ela~~l~~----s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~ 81 (194)
T d2p4wa1 11 VLGNETRRRILFLLTK-RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (194)
T ss_dssp HHHSHHHHHHHHHHHH-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccce
Confidence 3344455667777876 69999999999999 99999999999999999975322111 2477776543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.08 E-value=0.052 Score=43.13 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=61.6
Q ss_pred eEEEEcCCc-c-HHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCCcEEEeccccccCChhHHHH
Q 016366 230 RLVDVGGGF-G-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEGDAILMKWILHCWDDDHCLR 305 (390)
Q Consensus 230 ~iLDiG~G~-G-~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~D~i~~~~vlh~~~d~~~~~ 305 (390)
+|+=||||. | .++..+.+..++.+++++|. ++.++.+++...+....-+... .....|+|++.- |......
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~-----p~~~~~~ 77 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFRE 77 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS-----CHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccC-----Cchhhhh
Confidence 578899995 4 57777877888889999998 7788887765544444433332 122348887654 5566788
Q ss_pred HHHHHHHhCCCCcEEE
Q 016366 306 ILKNCYKAVPGNGKVI 321 (390)
Q Consensus 306 ~L~~~~~~L~pgG~ll 321 (390)
++..+...++++..+.
T Consensus 78 vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 78 IAKKLSYILSEDATVT 93 (171)
T ss_dssp HHHHHHHHSCTTCEEE
T ss_pred hhhhhhcccccccccc
Confidence 9999999999887544
|
| >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Putative transcriptional regulator TM1602, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.05 E-value=0.011 Score=39.50 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=43.5
Q ss_pred HHhChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcc-eeecccCCCcceecCc
Q 016366 45 IQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV-LECSVSGGERLYALNP 107 (390)
Q Consensus 45 ~~lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gl-l~~~~~~~~~~y~~t~ 107 (390)
-...|++.|..+ +++|+++||+.+++ ..+-+.|-+..|...|+ +.. ..+.|.+.+
T Consensus 8 R~~~Il~~L~~~~~~vs~~~La~~l~V----S~~TI~rdi~~L~~~G~~I~~----~~gGY~L~~ 64 (65)
T d1j5ya1 8 RLKSIVRILERSKEPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVA----TPRGYVLAG 64 (65)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEE----ETTEEECCT
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEE----eCCCEEeCC
Confidence 345677888654 48999999999999 99999999999999997 442 345787753
|
| >d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Multiple antibiotic resistance repressor, MarR species: Escherichia coli [TaxId: 562]
Probab=94.88 E-value=0.0071 Score=46.96 Aligned_cols=65 Identities=23% Similarity=0.178 Sum_probs=51.6
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|..+|++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+++|+.+..+.
T Consensus 35 ~q~~vL~~l~~~~~~t~~ela~~~~i----~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~ 102 (138)
T d1jgsa_ 35 AQFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHhHHhCcCCCHHHHHHHHCC----CHhHHHHHHHHHhhCCCEEEeeccCCCCeeEEEECHHHHHHH
Confidence 44556666766679999999999999 999999999999999999875443333 477787777655
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.78 E-value=0.021 Score=50.97 Aligned_cols=55 Identities=9% Similarity=0.151 Sum_probs=39.4
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCC---CCCCceEEECCCCC
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP---SYAGVEHVGGNMFE 281 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~---~~~rv~~~~gd~~~ 281 (390)
...+|||||+|.|.++..++.+..--++++++. +...+..+ ..++++++.+|+..
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 456899999999999999998742225666664 44433332 34789999999874
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.73 E-value=0.035 Score=45.60 Aligned_cols=104 Identities=14% Similarity=0.070 Sum_probs=66.3
Q ss_pred cCCcceEEEEcCCc-cHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCC---------CCC-cEEEec
Q 016366 225 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESV---------PEG-DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~---------p~~-D~i~~~ 292 (390)
.++..+||.+|||. |..+..+++.....++++.|. +.-++.+++..- ..+.-...+++ +.+ |+++-.
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga-~~~~~~~~~~~~~~i~~~t~g~g~D~vid~ 101 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF-EIADLSLDTPLHEQIAALLGEPEVDCAVDA 101 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-EEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccc-cEEEeCCCcCHHHHHHHHhCCCCcEEEEEC
Confidence 67888999999998 667888888877778888887 677777776532 22211111111 223 777643
Q ss_pred ccc------cc-CChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 293 WIL------HC-WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 293 ~vl------h~-~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
.-. |+ .........|+.+.+.++|||+++++-...++
T Consensus 102 vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~ 145 (195)
T d1kola2 102 VGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTE 145 (195)
T ss_dssp CCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSC
T ss_pred ccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCC
Confidence 221 10 00111236799999999999999987654333
|
| >d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein BC1842 species: Bacillus cereus [TaxId: 1396]
Probab=94.72 E-value=0.017 Score=44.72 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=37.5
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcc
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~ 108 (390)
++|.++||+.+++ ++..++++|..|...|+|...++ .|.|.+...
T Consensus 23 ~vss~~IA~~~~i----~~~~l~kil~~L~~aGlv~S~rG--~GG~~L~~~ 67 (138)
T d1ylfa1 23 LCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNRG--PGGAGLLKD 67 (138)
T ss_dssp GCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEESSC
T ss_pred cCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeecC--CCCceecCC
Confidence 7999999999999 99999999999999999976432 366777653
|
| >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA4135 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.63 E-value=0.0054 Score=47.46 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=50.8
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCcccccccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~~ 114 (390)
++.++..|..+|++|+.+||+.+++ ++..+.++++-|+..|+|.+.....++ ..++|+.+..+..
T Consensus 32 q~~vL~~l~~~~~~t~~~la~~~~i----~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~ 99 (136)
T d2fbia1 32 QWRVIRILRQQGEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFV 99 (136)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeecCccCchhhhccCHHHHHHHH
Confidence 4455666776789999999999999 999999999999999999875443333 2667777765553
|
| >d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Organic hydroperoxide resistance transcriptional regulator OhrR species: Bacillus subtilis [TaxId: 1423]
Probab=94.42 E-value=0.0064 Score=47.13 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=52.1
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccccC
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFVSN 115 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~~~ 115 (390)
++.++..|..++++|..+||+.+++ ++..+.+.++-|+..|+|.+...+++++ .++|+.+..+...
T Consensus 35 q~~vL~~l~~~~~~t~~~La~~~~i----~~~~vsr~i~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~~ 103 (137)
T d1z91a1 35 QYLALLLLWEHETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK 103 (137)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHhhccceEEeecCCCCCeEEEEECHHHHHHHHH
Confidence 3445566666679999999999999 9999999999999999998765434433 6788888766643
|
| >d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Hypothetical protein PH1932 domain: Hypothetical protein PH1932 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.41 E-value=0.013 Score=47.97 Aligned_cols=69 Identities=10% Similarity=0.166 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCC-----CcceecCcccc
Q 016366 37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG-----ERLYALNPVSK 110 (390)
Q Consensus 37 ~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~-----~~~y~~t~~s~ 110 (390)
...+|..-.+..|++.|.. ||.|+.|||+.+|+ .+..+.+.|+.|...|+|....... ...|++|..+-
T Consensus 12 ~~~~l~~p~R~~Il~~L~~-~~~s~~ela~~lg~----s~~~v~~hl~~L~~~glv~~~~~~~~~g~~~k~y~~~~~~~ 85 (190)
T d1ulya_ 12 VIKVMLEDTRRKILKLLRN-KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADVF 85 (190)
T ss_dssp HHHHHHSHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSSEE
T ss_pred HHHHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeeccCCcceEEEEEcccce
Confidence 3566777788889999976 79999999999999 9999999999999999996432111 12377776543
|
| >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator OEOE1854 species: Oenococcus oeni [TaxId: 1247]
Probab=94.40 E-value=0.014 Score=44.88 Aligned_cols=66 Identities=12% Similarity=0.232 Sum_probs=50.5
Q ss_pred HHHhChhHHHhhc--CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~--g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+ +++|..|||+.+++ +...+.++++-|+..|+|.+.....+. .+++|+.+..+.
T Consensus 29 ~~q~~vL~~l~~~~~~~it~~ela~~~~~----~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~ 99 (135)
T d3broa1 29 GTQMTIIDYLSRNKNKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 99 (135)
T ss_dssp HHHHHHHHHHHHTTTSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHCc----CHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHH
Confidence 4455566667654 36999999999999 999999999999999999875433333 377788766554
|
| >d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical transcriptional regulator ST1889 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=94.36 E-value=0.0098 Score=44.08 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=37.4
Q ss_pred hChhHHHh-hcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 47 LGVFEIIA-KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 47 lglfd~L~-~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
..|+..|. ..||+|+.+||+.+++ ++..+.+.++-|...|+|.+.
T Consensus 24 ~~iL~~L~~~~~~~t~~eLa~~~~i----~~~tvs~~l~~L~~~GlV~r~ 69 (109)
T d2d1ha1 24 VAVLLKMVEIEKPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCc----cHhHHHHHHHHHHHCCCEEEe
Confidence 33444443 3468999999999999 999999999999999999864
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.30 E-value=0.044 Score=48.54 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=65.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCC------CCCceEEECCCCC-CC-CCC-cEEEec-
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-SV-PEG-DAILMK- 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~~-p~~-D~i~~~- 292 (390)
..++.+|||+.+|.|.=+..++.... +..++..|. +.-++..++ ..++.....|... +. ... |.|++.
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 46678999999999998888887654 567888886 433333322 2567777777654 22 222 777652
Q ss_pred -----cccc-------cCChhH-------HHHHHHHHHHhCCCCcEEEEEecc
Q 016366 293 -----WILH-------CWDDDH-------CLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 293 -----~vlh-------~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.++. .+...+ -.++|.++.+.+||||+++-++=.
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS 246 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 246 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence 1121 122222 346899999999999987765533
|
| >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Enterococcus faecalis [TaxId: 1351]
Probab=94.20 E-value=0.011 Score=46.11 Aligned_cols=62 Identities=8% Similarity=0.031 Sum_probs=47.8
Q ss_pred ChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 48 glfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++..|..++++|..+||+++++ ++..+.+.++-|+..|+|.+.....++ ...+|+.+..+.
T Consensus 33 ~iL~~i~~~~~~t~~~la~~l~i----~~~tvs~~l~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~~~ 97 (144)
T d1lj9a_ 33 LYLVRVCENPGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCc----cHhhHHHHHHHHHhhhcccccCCCCCCCccccccCHHHHHHH
Confidence 34445666678999999999999 999999999999999999876443343 356677666444
|
| >d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA3067 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.19 E-value=0.015 Score=45.37 Aligned_cols=66 Identities=20% Similarity=0.200 Sum_probs=49.0
Q ss_pred HHHhChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|... |++|+.+||+.+++ ++..+.++++-|+..|+|.+.....+. .+.+|+.+..+.
T Consensus 34 ~~q~~vL~~L~~~~g~~t~~~La~~~~~----~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~ 103 (145)
T d2hr3a1 34 FSQLVVLGAIDRLGGDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 103 (145)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHHH
Confidence 3456666777543 58999999999999 999999999999999999875332222 377777776554
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.06 E-value=0.062 Score=46.86 Aligned_cols=102 Identities=17% Similarity=0.233 Sum_probs=64.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHh----hCCCC--CCceEEECCCCC-C--CCCC-cEEEec-
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ----DAPSY--AGVEHVGGNMFE-S--VPEG-DAILMK- 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~----~a~~~--~rv~~~~gd~~~-~--~p~~-D~i~~~- 292 (390)
...+.+|||+.+|.|.=+..++....+.+++..|. +.-++ ..++. ..+.....|... . .+.. |.|++.
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 56778999999999999999998888888888886 32222 22222 334444444432 1 2222 777542
Q ss_pred -----ccccc-------CChhH-------HHHHHHHHHHhCCCCcEEEEEecc
Q 016366 293 -----WILHC-------WDDDH-------CLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 293 -----~vlh~-------~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.++.. +...+ -.++|+++.+.|+|||+|+-++=.
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS 232 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 232 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 22222 22211 346899999999999988765533
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=93.89 E-value=0.22 Score=39.79 Aligned_cols=96 Identities=19% Similarity=0.116 Sum_probs=61.1
Q ss_pred cCCcceEEEEcCCc-cHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-----------CCCCC-cEEE
Q 016366 225 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-----------SVPEG-DAIL 290 (390)
Q Consensus 225 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-----------~~p~~-D~i~ 290 (390)
.+.+.+||-+|+|. |.++..+++....-+++++|. +.-++.+++..--.++...-.+ .-+.+ |+|+
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi 105 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 105 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence 56678999999984 788888888775447888886 6667777665322222211000 01223 8776
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
-.- ..+ ..++.+.+.|+|||+++++-...+
T Consensus 106 d~v-----G~~---~~~~~a~~~l~~~G~iv~~G~~~~ 135 (182)
T d1vj0a2 106 EAT-----GDS---RALLEGSELLRRGGFYSVAGVAVP 135 (182)
T ss_dssp ECS-----SCT---THHHHHHHHEEEEEEEEECCCCSC
T ss_pred ecC-----Cch---hHHHHHHHHhcCCCEEEEEeecCC
Confidence 332 111 457888899999999988765433
|
| >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Transcriptional regulator LrpC species: Bacillus subtilis [TaxId: 1423]
Probab=93.84 E-value=0.026 Score=37.25 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=41.5
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCccee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~ 93 (390)
.+..|.+.|..++..|..+||+++|+ .+..+.+=++-|...|++.
T Consensus 6 ~D~~IL~~L~~n~r~s~~~iA~~lgi----s~~tv~~Ri~~L~~~giI~ 50 (63)
T d2cfxa1 6 IDLNIIEELKKDSRLSMRELGRKIKL----SPPSVTERVRQLESFGIIK 50 (63)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCee
Confidence 46678899998889999999999999 9999999999999999997
|
| >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: LprA species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.79 E-value=0.018 Score=37.60 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=41.0
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCccee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~ 93 (390)
.+..|...|.+++..|..+||+++|+ ++..+.+-++.|...|++.
T Consensus 4 ~D~kIl~~L~~n~r~s~~~lA~~~gl----s~~~v~~Ri~~L~~~giI~ 48 (60)
T d1i1ga1 4 RDKIILEILEKDARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIE 48 (60)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeE
Confidence 35678888988889999999999999 9999999999999999997
|
| >d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Regulatory protein AsnC species: Escherichia coli [TaxId: 562]
Probab=93.78 E-value=0.021 Score=37.66 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=41.8
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|...|.+++..|..+||+++|+ ++..+.+=++.|...|++..
T Consensus 6 ~D~~IL~~L~~~~r~s~~eiA~~l~l----s~~~v~~Ri~rL~~~GiI~~ 51 (63)
T d2cg4a1 6 LDRGILEALMGNARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG 51 (63)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 46678889998889999999999999 99999999999999999973
|
| >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Putative transcriptional regulator PH1519 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.67 E-value=0.021 Score=37.24 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=41.6
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCccee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~ 93 (390)
++..|...|.+++..|..+||+++|+ .+..+.+-++.|...|++.
T Consensus 4 ~D~~Il~~L~~n~r~s~~eiA~~l~l----s~~~v~~Ri~~L~~~giI~ 48 (60)
T d2cyya1 4 IDKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIK 48 (60)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeE
Confidence 56778899998889999999999999 9999999999999999997
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.64 E-value=0.028 Score=51.15 Aligned_cols=93 Identities=10% Similarity=0.012 Sum_probs=66.9
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---------------------CCceEEECCCCC---
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------------AGVEHVGGNMFE--- 281 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---------------------~rv~~~~gd~~~--- 281 (390)
++.+|||..||+|..+.+.+.+.+..+++..|+ +..++.++++ ..+.+...|...
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 457899999999999999998887778889998 7777776642 124455555533
Q ss_pred CCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 282 SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 282 ~~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
..... |+|.+.= +..+. .+|..+.++++.||.|.|.-+
T Consensus 125 ~~~~~fDvIDiDP----fGs~~--pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGSPM--EFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HSTTCEEEEEECC----SSCCH--HHHHHHHHHEEEEEEEEEEEC
T ss_pred hhcCcCCcccCCC----CCCcH--HHHHHHHHHhccCCEEEEEec
Confidence 12223 8886653 33333 789999999999999887543
|
| >d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator PA3341 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.51 E-value=0.024 Score=43.62 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=46.2
Q ss_pred ChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 48 GVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 48 glfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++-.|..++ ++|+.+||+.+++ ++..+.++++.|+..|+|.+...+.++ ..++|+.+..+.
T Consensus 32 ~iL~~l~~~~~~~t~~~la~~~~~----~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~ 97 (137)
T d2fbha1 32 LVLLHLARHRDSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 97 (137)
T ss_dssp HHHHHHHHCSSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHCC----CHHHHHHHHHHHHHcCCccccCCCCCCCchhhhcCHHHHHHH
Confidence 3444554443 6899999999999 999999999999999999875433333 256677666554
|
| >d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Protease production regulatory protein Hpr species: Bacillus subtilis [TaxId: 1423]
Probab=93.27 E-value=0.013 Score=46.94 Aligned_cols=64 Identities=14% Similarity=-0.018 Sum_probs=48.5
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
+..++..|..++++|+.+||+.+++ +...+.++++.|...|+|.+.....+. ..++|+.+..+.
T Consensus 43 q~~vL~~l~~~~~~t~~~la~~~~l----~~~tvs~~i~rL~~~gli~r~~~~~D~R~~~l~lT~~G~~~~ 109 (162)
T d2fxaa1 43 EHHILWIAYQLNGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 109 (162)
T ss_dssp HHHHHHHHHHHTSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHhhhccCCCcCHHHHHHHHcC----CchhhHHHHHHHHHCCCceeecccccCeeeeeccCHhHHHHH
Confidence 3446677776679999999999999 999999999999999999875432333 266677666544
|
| >d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarR species: Staphylococcus aureus [TaxId: 1280]
Probab=93.11 E-value=0.016 Score=43.42 Aligned_cols=63 Identities=21% Similarity=0.213 Sum_probs=46.6
Q ss_pred hChhHHHh--hcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 47 LGVFEIIA--KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 47 lglfd~L~--~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
+.++..|. ..+++|..+||+.+++ ++..+.++++.|+..|+|.+.....+.+ ..+|+.+..+.
T Consensus 35 ~~vL~~l~~~~~~~~t~~ela~~l~~----~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~ 102 (115)
T d1hsja1 35 IYILNHILRSESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 102 (115)
T ss_dssp HHHHHHHHTCSCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHHHccCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHHH
Confidence 33455554 2358999999999999 9999999999999999998755433433 55666665443
|
| >d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=93.01 E-value=0.018 Score=43.76 Aligned_cols=64 Identities=11% Similarity=0.080 Sum_probs=48.4
Q ss_pred HhChhHHHhh--cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 46 QLGVFEIIAK--AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 46 ~lglfd~L~~--~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
++.++..|.. ++++|+.+||+.+++ ++..+.+.++-|...|+|.+.....+++ ..+|+.+..+.
T Consensus 35 q~~vL~~l~~~~~~~~~~~~ia~~l~~----~~~~vs~~v~~L~~~glV~r~~~~~D~R~v~i~LT~~G~~~~ 103 (125)
T d1p4xa2 35 EFTILAIITSQNKNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 103 (125)
T ss_dssp HHHHHHHHHTTTTCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHHccCCCccHHHHHHHHCC----CcchHHHHHHHHHhccCEeeeecCCCCCeEEEEECHHHHHHH
Confidence 4445666643 247899999999999 9999999999999999998765444443 66677665444
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=93.00 E-value=0.02 Score=54.67 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=65.9
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC----CC--------------CeEEEecc-hHHHhhCCC------
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY----PQ--------------IKAVNFDL-PHVVQDAPS------ 268 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~----p~--------------~~~~~~Dl-~~~~~~a~~------ 268 (390)
++..+++.+. .....+|+|-.||+|.++....+.. .. ....++|+ +.+...++-
T Consensus 152 Iv~~mv~ll~-~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~ 230 (524)
T d2ar0a1 152 LIKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 230 (524)
T ss_dssp HHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred hhHhhhhccc-CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence 3444455554 4556799999999999998766532 11 13567776 555544431
Q ss_pred C-----CCceEEECCCCC-CC---CCCcEEEecccccc--C-----------ChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 269 Y-----AGVEHVGGNMFE-SV---PEGDAILMKWILHC--W-----------DDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 269 ~-----~rv~~~~gd~~~-~~---p~~D~i~~~~vlh~--~-----------~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
. ..-.+..++.+. +. +..|+|+++=-+.. . .+.+ ..++.++.+.|+|||++.++-+
T Consensus 231 ~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 231 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQ-LCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHH-HHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhcccccccc-HHHHHHHHHhccccCcEEEEEe
Confidence 0 123455566654 21 12388887643321 0 1112 2589999999999999888644
|
| >d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Archaeal DNA-binding protein domain: Sso10a (SSO10449) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.98 E-value=0.026 Score=40.14 Aligned_cols=49 Identities=10% Similarity=0.192 Sum_probs=44.3
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccccccc
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~ 114 (390)
+.+...|..++++ +...+..+|+.|+..|++.. .++.|.+|+.+..|..
T Consensus 18 g~~kT~i~~~aNL----s~~~~~kyl~~L~~~GLI~~----~~~~Y~iT~kG~~~L~ 66 (90)
T d1r7ja_ 18 GSPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQ----EGKQYMLTKKGEELLE 66 (90)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEECHHHHHHHH
T ss_pred CCCccHHHHHcCC----CHHHHHHHHHHHHHCCCeee----cCCEEEECccHHHHHH
Confidence 5688999999999 99999999999999999984 6789999999987774
|
| >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Iron-dependent regulator IdeR species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.81 E-value=0.077 Score=34.81 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=33.8
Q ss_pred hhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 54 AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 54 ~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.++++++..+||+.+|+ .++.+.+.++-|...|+|..
T Consensus 19 ~~~~~v~~~~iA~~L~v----s~~SVt~mvkrL~~~Glv~~ 55 (63)
T d2isya1 19 EEGVTPLRARIAERLDQ----SGPTVSQTVSRMERDGLLRV 55 (63)
T ss_dssp HTTCCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred hcCCCCcHHHHHHHhCC----CchhHHHHHHHHHHCCCEEE
Confidence 44468999999999999 99999999999999999986
|
| >d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Salmonella typhimurium [TaxId: 90371]
Probab=92.65 E-value=0.029 Score=43.25 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=46.6
Q ss_pred HhChhHHHhh-cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 46 QLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 46 ~lglfd~L~~-~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
++.++..|.. ++++|..+||+.+++ ++..+.+.++.|+..|+|.+...+.++ .+++|+.+..+.
T Consensus 33 ~~~~L~~l~~~~~~~t~~~la~~l~i----~~~~vs~~l~~L~~~glI~~~~~~~D~R~~~l~lT~~G~~~~ 100 (140)
T d3deua1 33 HWVTLHNIHQLPPDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI 100 (140)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHcCCCccHHHHHHHHCC----CHhHHHHHHHHHHhCCCEEecccCCCCCceeeEECHHHHHHH
Confidence 4445556654 346999999999999 999999999999999999864333333 377788776555
|
| >d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Manganese transport regulator MntR species: Bacillus subtilis [TaxId: 1423]
Probab=92.64 E-value=0.048 Score=35.63 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=35.5
Q ss_pred hHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 50 FEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 50 fd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
|....+.|+++..+||+.+|+ .++.....++-|...|+|..
T Consensus 13 ~~l~~~~~~v~~~~iA~~L~v----s~~SVs~mikrL~~~GlV~~ 53 (61)
T d2ev0a1 13 YMLIEEKGYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIY 53 (61)
T ss_dssp HHHHHHHSSCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHhcCCCccHHHHHHHhCC----CchhHHHHHHHHHHCCCEEE
Confidence 343344469999999999999 99999999999999999986
|
| >d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: DNA-binding protein Mj223 domain: DNA-binding protein Mj223 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.42 E-value=0.037 Score=43.17 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=37.7
Q ss_pred hChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 47 lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
..|+..|..+ +|+|+.|||+++|+ ++..+.+.++-|...|+|.+.
T Consensus 29 ~~i~~~L~~~~~plt~~ela~~l~v----sk~~vs~~l~~L~~~GlV~r~ 74 (151)
T d1ku9a_ 29 GAVYAILYLSDKPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (151)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhCCCCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCEEEE
Confidence 3455556433 48999999999999 999999999999999999864
|
| >d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtcD species: Bacillus subtilis [TaxId: 1423]
Probab=92.36 E-value=0.06 Score=38.58 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=53.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccCCC---cc
Q 016366 27 HAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RL 102 (390)
Q Consensus 27 ~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~---~~ 102 (390)
..+++..+-|...++.. |.. |+....||.+.+ |+ .+..|.+=|+.|+..|+|.+...... -.
T Consensus 3 ~~l~ilg~kW~l~Il~~---------L~~-g~~rF~el~~~l~gi----s~~~Ls~rLk~Le~~glv~r~~~~~~p~~ve 68 (95)
T d2hzta1 3 ATLEVIGGKWKCVILCH---------LTH-GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPKVE 68 (95)
T ss_dssp HHHHHHCSTTHHHHHHH---------HTT-CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEE
T ss_pred HHHHHHcCCCHHHHHHH---------HHc-CCCCHHHHHHHhhcC----ChhHHHHHHHHHHHhHHHhheeccccccchh
Confidence 45566666666655543 333 689999999997 99 99999999999999999986432111 13
Q ss_pred eecCccccccc
Q 016366 103 YALNPVSKYFV 113 (390)
Q Consensus 103 y~~t~~s~~l~ 113 (390)
|++|+.+..+.
T Consensus 69 Y~LT~~G~~L~ 79 (95)
T d2hzta1 69 YELSEYGRSLE 79 (95)
T ss_dssp EEECTTGGGGH
T ss_pred hhhhhhHHHHH
Confidence 99998887766
|
| >d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=91.84 E-value=0.035 Score=42.03 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=48.5
Q ss_pred HHhChhHHHhhc--CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
.++.++..|..+ +++|+.|||+.+++ .+..+.+.++-|...|+|.+.....+.+ ..+|+.+....
T Consensus 35 ~q~~iL~~l~~~~~~~~t~~eia~~~~~----~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~ 104 (125)
T d1p4xa1 35 KEFILLTYLFHQQENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI 104 (125)
T ss_dssp HHHHHHHHHHSCSCSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCceeecccCCCCeEEEEECHHHHHHH
Confidence 345556666443 47899999999999 9999999999999999998765443333 56677665444
|
| >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: LexA repressor, N-terminal DNA-binding domain domain: LexA repressor, N-terminal DNA-binding domain species: Escherichia coli [TaxId: 562]
Probab=91.82 E-value=0.073 Score=35.86 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=32.4
Q ss_pred hcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 55 KAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 55 ~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
++| |.|..|||+.+|+. .+..+.+.|+.|...|++.+
T Consensus 20 ~~G~~Ps~rei~~~~g~~---S~stv~~~l~~Le~kG~I~r 57 (71)
T d1jhfa1 20 QTGMPPTRAEIAQRLGFR---SPNAAEEHLKALARKGVIEI 57 (71)
T ss_dssp HHSSCCCHHHHHHHTTCS---SHHHHHHHHHHHHHTTSEEE
T ss_pred HhCCCCCHHHHHHHcCCC---CHHHHHHHHHHHHHCcCeec
Confidence 346 99999999999992 56679999999999999996
|
| >d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein EF0647 species: Enterococcus faecalis [TaxId: 1351]
Probab=91.79 E-value=0.06 Score=39.58 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccCC
Q 016366 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (390)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~ 99 (390)
..++.+..+++..+-|...+|.. |.. |+....||...+ |+ .+..|.+=|+.|+..|+|.+.....
T Consensus 5 ~~c~i~~al~iig~kW~~~Il~~---------L~~-g~~RF~el~~~l~gI----S~~~Ls~rLk~L~~~glv~R~~~~~ 70 (108)
T d1z7ua1 5 KQTSINLALSTINGKWKLSLMDE---------LFQ-GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNE 70 (108)
T ss_dssp HHHHHHHHHHTTCSTTHHHHHHH---------HHH-SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECC
T ss_pred cCCcHHHHHHHHcCCCHHHHHHH---------HHc-CCCCHHHHHHHCcCC----ChhHHHHHHHHHHHCCcceeeccCC
Confidence 46888889999999998876654 344 588999999997 79 9999999999999999998642211
Q ss_pred C---cceecCccccccc
Q 016366 100 E---RLYALNPVSKYFV 113 (390)
Q Consensus 100 ~---~~y~~t~~s~~l~ 113 (390)
. -.|++|+.+..+.
T Consensus 71 ~p~~veY~LT~~G~~L~ 87 (108)
T d1z7ua1 71 LPPRVEYTLTPEGYALY 87 (108)
T ss_dssp SSCEEEEEECHHHHHHH
T ss_pred CcceehhhhchhHHHHH
Confidence 1 1299999888766
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=91.73 E-value=0.69 Score=36.07 Aligned_cols=92 Identities=10% Similarity=0.098 Sum_probs=60.1
Q ss_pred cCCcceEEEEcCC-ccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-C-----------CCCC-cEE
Q 016366 225 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-S-----------VPEG-DAI 289 (390)
Q Consensus 225 ~~~~~~iLDiG~G-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~-----------~p~~-D~i 289 (390)
.+...+||-+||| .|.++..+++.. +.+++++|. +.-++.+++..--..+..|-.. + .+.+ |+|
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 5677889999988 567777777765 479999997 6667777664322222222111 1 1233 777
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 290 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 290 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
+-.- .. ...+..+.+.++|+|++++.-.
T Consensus 103 id~~-----g~---~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 103 IDCS-----GN---EKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp EECS-----CC---HHHHHHHHHHSCTTCEEEECSC
T ss_pred eecC-----CC---hHHHHHHHHHHhcCCceEEEec
Confidence 6432 11 1568888899999999998764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.52 E-value=1.2 Score=34.62 Aligned_cols=94 Identities=9% Similarity=0.003 Sum_probs=61.4
Q ss_pred cCCcceEEEEcCCcc-HHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCC----------CCCC-cEEEe
Q 016366 225 FQNVERLVDVGGGFG-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES----------VPEG-DAILM 291 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G-~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~----------~p~~-D~i~~ 291 (390)
.++..+|+=+|||.. ..+..+++.....++++.|. +.-++.+++..--.++..+-.++ .+.+ |+|+-
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 567789999999854 56666777665557888887 77777777653323333222211 1223 88765
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 292 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 292 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
..- .+ ..++...+.++|||++++.-..
T Consensus 104 ~~G-----~~---~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 104 CTG-----AE---ASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp CSC-----CH---HHHHHHHHHSCTTCEEEECSCC
T ss_pred ccC-----Cc---hhHHHHHHHhcCCCEEEEEecC
Confidence 432 11 5688999999999999987653
|
| >d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PG0823 species: Porphyromonas gingivalis [TaxId: 837]
Probab=91.49 E-value=0.065 Score=38.96 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccCC
Q 016366 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (390)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~ 99 (390)
+.++....+++..+-|...+|+. |.. |+....||.+.+ |+ .+..|.+=|+.|++.|+|.+.....
T Consensus 6 ~~Cpv~~~l~ilg~kW~l~Il~~---------L~~-g~~rF~el~~~l~gI----s~~~Ls~rLkeL~~~glv~r~~~~~ 71 (102)
T d2fswa1 6 EECPVRKSMQIFAGKWTLLIIFQ---------INR-RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPE 71 (102)
T ss_dssp TTCHHHHHHHHHTSSSHHHHHHH---------HTT-SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECS
T ss_pred CCCCHHHHHHHHcCCCHHHHHHH---------Hcc-CCCCHHHHHhhCccc----chhHHHHHHHHHHHCCceeecccCC
Confidence 45789999999999998877654 233 588999999997 89 9999999999999999998642211
Q ss_pred -C--cceecCccccccc
Q 016366 100 -E--RLYALNPVSKYFV 113 (390)
Q Consensus 100 -~--~~y~~t~~s~~l~ 113 (390)
+ -.|++|+.+..+.
T Consensus 72 ~p~~veY~LT~~G~~L~ 88 (102)
T d2fswa1 72 VPPRVEYSLTPLGEKVL 88 (102)
T ss_dssp SSCEEEEEECHHHHTTH
T ss_pred CCCeehhhhhHhHHHHH
Confidence 1 1399999887665
|
| >d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtfH species: Salmonella typhimurium [TaxId: 90371]
Probab=91.36 E-value=0.067 Score=39.72 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=63.4
Q ss_pred HhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccC
Q 016366 20 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSG 98 (390)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~ 98 (390)
.+.+.....+++..+-|...+|.. |.. |+....||...+ |+ .+..|.+-|+.|+..|+|.+....
T Consensus 9 ~~~Cpv~~~l~~ig~kW~l~Il~~---------L~~-g~~RF~el~~~l~gi----s~~~Ls~rL~~Le~~glv~R~~~~ 74 (114)
T d1yyva1 9 AEQCPSREVLKHVTSRWGVLILVA---------LRD-GTHRFSDLRRKMGGV----SEKMLAQSLQALEQDGFLNRVSYP 74 (114)
T ss_dssp STTCTHHHHHHHHHSHHHHHHHHH---------GGG-CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred cCCCCHHHHHHHHcCCCHHHHHHH---------Hhc-CCCCHHHHHHHcccc----chhHHHHHHHHHHHHHHHhhcccC
Confidence 456888999999999998877754 333 688999999998 78 899999999999999999874321
Q ss_pred CC---cceecCccccccc
Q 016366 99 GE---RLYALNPVSKYFV 113 (390)
Q Consensus 99 ~~---~~y~~t~~s~~l~ 113 (390)
.. -.|++|+.+..|.
T Consensus 75 ~~p~~veY~LT~~G~~L~ 92 (114)
T d1yyva1 75 VVPPHVEYSLTPLGEQVS 92 (114)
T ss_dssp SSSCEEEEEECHHHHHHH
T ss_pred CCCchhHhHhhHhHHHHH
Confidence 11 2399999888776
|
| >d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator DR1159 species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.01 E-value=0.038 Score=44.37 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=44.7
Q ss_pred hChhHHHhhcC---CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 47 LGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 47 lglfd~L~~~g---~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
+.|+-.|...| ++|..+||+.+++ ++..+.++++-|+..|+|.+.....++ ..++|+.+..+.
T Consensus 65 ~~vL~~L~~~~~~~~lt~~eLa~~l~i----~~~tvsr~l~~Le~~GlV~r~~~~~DrR~~~i~LT~~G~~l~ 133 (172)
T d2fbka1 65 WDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 133 (172)
T ss_dssp HHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred HHHHHHHHhhCCCCCcCHHHHHHHHCc----CHhHHHHHHHHHHhCCCeeeeccccchhhHHhhcCHHHHHHH
Confidence 34445554333 4899999999999 999999999999999999975432333 256677666554
|
| >d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PA1607 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.85 E-value=0.11 Score=40.11 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC-
Q 016366 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE- 100 (390)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~- 100 (390)
.++....+++...-|...+|+.. .. |+.+..||.+.+|+ .+..|.+=|+.|+..|+|.+.....+
T Consensus 7 ~Cpv~~~l~ilg~kW~l~Il~~l---------~~-G~~rf~el~~~lgi----s~~vLs~rL~~L~~~gLv~r~~~~~p~ 72 (142)
T d2f2ea1 7 SCPVARPLDVIGDGWSMLIVRDA---------FE-GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGS 72 (142)
T ss_dssp SCTTTTTHHHHCSSSHHHHHHHH---------HT-TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred CCCHHHHHHHHcCCCHHHHHHHH---------Hc-CCCCHHHHHHHhhc----cHHHHHHHHHHHHHhcceeeecCCCCC
Confidence 35566778888888888777753 23 69999999999999 89999999999999999976211122
Q ss_pred -cceecCccccccc
Q 016366 101 -RLYALNPVSKYFV 113 (390)
Q Consensus 101 -~~y~~t~~s~~l~ 113 (390)
-.|++|+.+..|.
T Consensus 73 r~~Y~LT~~G~~L~ 86 (142)
T d2f2ea1 73 HQEYRLTDKGRALF 86 (142)
T ss_dssp CEEEEECHHHHTTH
T ss_pred eeEEecCcCcchHH
Confidence 2499998887666
|
| >d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Pleiotropic regulator of virulence genes, SarA species: Staphylococcus aureus [TaxId: 1280]
Probab=90.76 E-value=0.046 Score=40.67 Aligned_cols=62 Identities=11% Similarity=0.154 Sum_probs=46.2
Q ss_pred ChhHHHhhc--CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 48 GVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 48 glfd~L~~~--g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
.++..|..+ |++|..+||+.+++ ++..+.+.++.|...|++.+..+..+++ ..+|+.+..+.
T Consensus 37 ~vL~~l~~~~~~~~t~~~la~~l~~----~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~ 103 (115)
T d2frha1 37 AVLTYISENKEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 103 (115)
T ss_dssp HHHHHHHHTCCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHCC----CHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHHH
Confidence 334445432 36899999999999 9999999999999999998765433333 66777665443
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.49 E-value=0.38 Score=41.71 Aligned_cols=57 Identities=16% Similarity=0.150 Sum_probs=41.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCC------CCCceEEECCCCC
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE 281 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~ 281 (390)
...+.+|||+.+|.|.-+..++... +..+++.+|. +.-++..++ ..++.+...|+..
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~ 156 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLA 156 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhh
Confidence 4567899999999999888888753 5567888887 443443332 2678888888765
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=90.49 E-value=0.56 Score=36.49 Aligned_cols=84 Identities=12% Similarity=0.069 Sum_probs=55.3
Q ss_pred eEEEEcCC--ccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHHHH
Q 016366 230 RLVDVGGG--FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRI 306 (390)
Q Consensus 230 ~iLDiG~G--~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~ 306 (390)
+|.=||+| -+.++..+.++ +.+++++|. ++.++.+++...+.....+ .+.+..+|+|++. .|.....++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~~~~~~-~~~~~~~DiIila-----vp~~~~~~v 73 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDEAGQD-LSLLQTAKIIFLC-----TPIQLILPT 73 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSEEESC-GGGGTTCSEEEEC-----SCHHHHHHH
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhccceeeee-ccccccccccccc-----CcHhhhhhh
Confidence 57778887 34556666554 457788887 6777776665433322222 2234455998764 366778899
Q ss_pred HHHHHHhCCCCcEEE
Q 016366 307 LKNCYKAVPGNGKVI 321 (390)
Q Consensus 307 L~~~~~~L~pgG~ll 321 (390)
++++...++++..++
T Consensus 74 l~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 74 LEKLIPHLSPTAIVT 88 (165)
T ss_dssp HHHHGGGSCTTCEEE
T ss_pred hhhhhhhccccccee
Confidence 999999999887554
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=89.99 E-value=1 Score=35.44 Aligned_cols=93 Identities=13% Similarity=0.119 Sum_probs=62.8
Q ss_pred cCCcceEEEEcCCc-cHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-C--------CCCC-cEEEec
Q 016366 225 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-S--------VPEG-DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~--------~p~~-D~i~~~ 292 (390)
.++..+||=+|||. |.++..+++.....++++.|. ++-++.+++..--.++...-.+ . .+.+ |+++-.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 56778999999997 889999999887667888887 5566667665433333221111 1 1123 887543
Q ss_pred cccccCChhHHHHHHHHHHHhCCCC-cEEEEEec
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGN-GKVIVMNS 325 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pg-G~lli~e~ 325 (390)
. ..+ ..+....+.++|| |+++++-.
T Consensus 106 ~-----G~~---~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 106 A-----GTA---QTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp S-----CCH---HHHHHHHHTBCTTTCEEEECCC
T ss_pred c-----ccc---hHHHHHHHHhhcCCeEEEecCC
Confidence 2 111 5699999999996 99988654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.73 E-value=0.58 Score=36.90 Aligned_cols=93 Identities=16% Similarity=0.182 Sum_probs=59.9
Q ss_pred cCCcceEEEEcCCc-cHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCC------C-CCC-cEEEeccc
Q 016366 225 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES------V-PEG-DAILMKWI 294 (390)
Q Consensus 225 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~------~-p~~-D~i~~~~v 294 (390)
.++..+||=+|||. |..+..+++.....++++.|. +.-++.+++..-..++..+-.+. + +.+ |+|+-.--
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G 105 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG 105 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCC
Confidence 66778899999985 356777777766667777775 66677776654444443322211 1 123 77653321
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
. ...++.+.+.++|+|+++++-.
T Consensus 106 -----~---~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 106 -----S---PEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp -----C---HHHHHHHHHTEEEEEEEEECCC
T ss_pred -----c---HHHHHHHHhcccCceEEEEEee
Confidence 1 1568888999999999988653
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=88.26 E-value=0.75 Score=35.88 Aligned_cols=98 Identities=18% Similarity=0.249 Sum_probs=60.8
Q ss_pred HHhhccCCcceEEEEcC-C-ccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCC--------CCCC-c
Q 016366 220 EHYEGFQNVERLVDVGG-G-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES--------VPEG-D 287 (390)
Q Consensus 220 ~~~~~~~~~~~iLDiG~-G-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~--------~p~~-D 287 (390)
.... ..+..+||=+|| | .|..+..+++.....++++.|. +.-++.+++..--.++..+-.+. .+.+ |
T Consensus 21 ~~~~-~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 21 RKAS-LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp HHTT-CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred HHhC-CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccch
Confidence 3344 667789999996 3 5677777888776678888886 55556555432223333222211 1233 7
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+++-... . ...++.+.+.++|||+++++-..
T Consensus 100 ~vid~~g-----~---~~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 100 AVIDLNN-----S---EKTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp EEEESCC-----C---HHHHTTGGGGEEEEEEEEECCSS
T ss_pred hhhcccc-----c---chHHHhhhhhcccCCEEEEeccc
Confidence 7765432 1 15677788999999999987543
|
| >d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.18 E-value=0.27 Score=32.88 Aligned_cols=60 Identities=10% Similarity=0.074 Sum_probs=47.7
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCC-CcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAP-MMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~-~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
.+..|.+.|...|+.++-.||+.+|+ .. .-+-+.|..|...|.|...+ ..+-.|.++...
T Consensus 6 ~eekI~~~L~~~g~~~Al~iak~lGl----~kakeVN~~LY~L~k~g~v~k~~-~tPP~W~L~~~~ 66 (73)
T d1xmka1 6 IKEKICDYLFNVSDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQG-TTPPIWHLTDKK 66 (73)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEEC-SSSCEEEECHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHhCC----CcHHHHhHHHHHHHHCCCeecCC-CCCCceeeecch
Confidence 56678899998899999999999999 66 35899999999999998632 234467777543
|
| >d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.04 E-value=0.33 Score=30.65 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=36.4
Q ss_pred ChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 48 glfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
+.|..|......|+.+||.++++ ...-+-|.|..|...|.+..
T Consensus 6 ~~l~~lg~~~~~tA~~LA~kl~v----pKk~iNr~LYsL~~kgkl~k 48 (59)
T d2gxba1 6 KFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQK 48 (59)
T ss_dssp HHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHhcCCccchhHHHHHHHhCC----cHHHHHHHHHHHHHccchhh
Confidence 34555655348999999999999 88999999999999999985
|
| >d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Penicillinase repressor domain: Methicillin resistance regulatory protein MecI species: Staphylococcus aureus [TaxId: 1280]
Probab=86.85 E-value=0.13 Score=38.42 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=41.2
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.|+.|...|-..||.|+.||.+.+....+-.+.-+..+|+-|+..|+|.+.
T Consensus 8 ~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~r~ 58 (120)
T d1okra_ 8 AEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRK 58 (120)
T ss_dssp HHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhcccCccHHhHHHHHHHHHHCCCeEEE
Confidence 577888899887899999999888421111777999999999999999874
|
| >d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal domain of RPA32 domain: C-terminal domain of RPA32 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.50 E-value=0.34 Score=32.11 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=41.4
Q ss_pred ChhHHHhhc---CCCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 48 GVFEIIAKA---GELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 48 glfd~L~~~---g~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
.||..|... -++++.+|++++ ++ +...+...++.|.+.|.+-.- -+++.|..|.
T Consensus 10 ~V~~~i~s~~~~eGi~~~el~~~l~~~----~~~~i~~aid~L~~eG~IYsT--iDddHfkstd 67 (69)
T d1dpua_ 10 QVLNLIKACPRPEGLNFQDLKNQLKHM----SVSSIKQAVDFLSNEGHIYST--VDDDHFKSTD 67 (69)
T ss_dssp HHHHHHHHCCCTTTEEHHHHHHHSTTS----CHHHHHHHHHHHHHTTSEEEC--SSTTEEEESS
T ss_pred HHHHHHHhCCCccCcCHHHHHHHccCC----CHHHHHHHHHHHHhCCceecc--cccchhcccC
Confidence 355555432 289999999999 79 899999999999999998532 4567777653
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=86.47 E-value=2 Score=33.36 Aligned_cols=92 Identities=10% Similarity=-0.003 Sum_probs=59.2
Q ss_pred cCCcceEEEEcCCcc-HHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCC-------CCCC-cEEEeccc
Q 016366 225 FQNVERLVDVGGGFG-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES-------VPEG-DAILMKWI 294 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G-~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~-------~p~~-D~i~~~~v 294 (390)
..+..+||-+|+|.. ..+..+++.....++++.|. +.-++.+++.....++..+-... -+.+ |+|+-...
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g 109 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVG 109 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecC
Confidence 456778999999855 55567777666667888887 56677776654444444321100 1223 76653332
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.. ..+....+.+++||+++++-
T Consensus 110 -----~~---~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 110 -----SQ---ATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp -----CH---HHHHHGGGGEEEEEEEEECC
T ss_pred -----cc---hHHHHHHHHHhCCCEEEEEe
Confidence 11 46888899999999999865
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=86.35 E-value=0.58 Score=37.02 Aligned_cols=94 Identities=17% Similarity=0.114 Sum_probs=60.0
Q ss_pred cCCcceEEEEcCCc-cHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCC------C--CCC-cEEEecc
Q 016366 225 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES------V--PEG-DAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~------~--p~~-D~i~~~~ 293 (390)
.++..+||=+|||. |..+..+++.....++++.|. +.-++.+++..-..++.-.-.+. . ..+ |+|+-.-
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence 66778898899996 788888888765457888887 55566666543223322111110 1 123 8765432
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
-- + ..+..+.+.++|+|+++++-..
T Consensus 105 g~-----~---~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 105 GG-----S---ETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp SC-----T---THHHHHHHHEEEEEEEEECCCC
T ss_pred CC-----H---HHHHHHHHHHhcCCEEEEEeec
Confidence 21 1 4578888999999999986543
|
| >d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Probable transcription regulator BT4300, C-terminal domain species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=85.33 E-value=0.25 Score=33.22 Aligned_cols=42 Identities=12% Similarity=0.212 Sum_probs=35.9
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
++|-+|||+-+|+ ....+.|.|..|...|++.. ..+.+....
T Consensus 27 ~lt~~elA~~lg~----sr~tvsr~l~~l~~~g~I~~----~~~~i~I~d 68 (73)
T d1zyba1 27 KVKMDDLARCLDD----TRLNISKTLNELQDNGLIEL----HRKEILIPD 68 (73)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSCEE----ETTEEEESC
T ss_pred ecCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe----cCCEEEEcc
Confidence 7899999999999 99999999999999999985 445555543
|
| >d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Dlm-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.87 E-value=0.38 Score=29.62 Aligned_cols=53 Identities=9% Similarity=0.243 Sum_probs=42.3
Q ss_pred HhChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceec
Q 016366 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (390)
Q Consensus 46 ~lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~ 105 (390)
|-.|++.|.+.| |+.+..|++++++ +...|.+.|..|...+=|.. .+...|.+
T Consensus 3 EQkILQVL~dagspvk~~ql~k~cqV----pkk~lNqVL~rlkke~kVsl---~~patW~l 56 (57)
T d1j75a_ 3 EQKILQVLSDDGGPVKIGQLVKKCQV----PKKTLNQVLYRLKKEDRVSS---PEPATWSI 56 (57)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEE---EETTEEEE
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHCC----CHHHHHHHHHHHHhcccccc---CCCccccC
Confidence 456778887655 9999999999999 88999999999998887765 34455543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.39 E-value=0.53 Score=36.87 Aligned_cols=93 Identities=14% Similarity=0.078 Sum_probs=57.4
Q ss_pred cCCcceEEEEcCC-ccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEEC-CCCC---CCCCC-cEEEec-cccc
Q 016366 225 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGG-NMFE---SVPEG-DAILMK-WILH 296 (390)
Q Consensus 225 ~~~~~~iLDiG~G-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~g-d~~~---~~p~~-D~i~~~-~vlh 296 (390)
..+..+||-+|+| .|.++..+++.. +++++++|. ++-++.+++..--.++.. +-.+ ..... |+++-. ..-+
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT 103 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence 6678899999998 677887787765 578888886 566666665432222221 1111 12233 776543 2222
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 297 CWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 297 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
.. .+..+.+.|+|+|+++++-.
T Consensus 104 ~~-------~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 104 DI-------DFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp TC-------CTTTGGGGEEEEEEEEECCC
T ss_pred cc-------hHHHHHHHhhccceEEEecc
Confidence 11 14456789999999998753
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=82.01 E-value=1.5 Score=34.06 Aligned_cols=92 Identities=15% Similarity=0.120 Sum_probs=56.3
Q ss_pred cCCcceEEEEcCC-ccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC---CCCCC-cEEEeccccccC
Q 016366 225 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPEG-DAILMKWILHCW 298 (390)
Q Consensus 225 ~~~~~~iLDiG~G-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~---~~p~~-D~i~~~~vlh~~ 298 (390)
.+++.+||=+|+| .|.++..+++.. ..+.+++|. ++-.+.+++...-.++..+-.. ....+ |+++-.--
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g---- 102 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA---- 102 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS----
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeee----
Confidence 6778889889987 467888888876 566667765 5455555553322333221111 11123 87764431
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 299 DDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
.+ ..+....+.++|+|+++++-.
T Consensus 103 -~~---~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 103 -AP---HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp -SC---CCHHHHHTTEEEEEEEEECCC
T ss_pred -cc---hhHHHHHHHHhcCCEEEEecc
Confidence 11 236777889999999998753
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=81.95 E-value=1 Score=40.08 Aligned_cols=60 Identities=13% Similarity=0.244 Sum_probs=36.8
Q ss_pred cCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-------CCCeEEEecc
Q 016366 195 GNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------PQIKAVNFDL 259 (390)
Q Consensus 195 ~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-------p~~~~~~~Dl 259 (390)
+.|+....|.++.+.+- ..+...+. .++..+|||+|+|+|.++..+++.. ..+++..++.
T Consensus 52 Tsp~is~~Fg~~ia~~~----~~~~~~~~-~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~ 118 (365)
T d1zkda1 52 TSPEISQMFGELLGLWS----ASVWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEI 118 (365)
T ss_dssp SHHHHCHHHHHHHHHHH----HHHHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECC
T ss_pred CCCchHHHHHHHHHHHH----HHHHHHhC-CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEecc
Confidence 34556666666553221 12223333 3455689999999999998876643 2345677776
|
| >d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: 34L species: Yaba-like disease virus, YLDV [TaxId: 132475]
Probab=81.51 E-value=0.37 Score=31.74 Aligned_cols=42 Identities=10% Similarity=0.089 Sum_probs=35.5
Q ss_pred hHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 50 FEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 50 fd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.+.|..+...|+.+||.++|+ ...-+-|.|..|...|.|...
T Consensus 16 l~~L~~~~~~tA~~LAk~Lg~----~Kk~VNr~LY~L~~~G~v~~~ 57 (70)
T d1sfua_ 16 VLSLNTNDYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV 57 (70)
T ss_dssp HHTSCTTCEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcCCCCCchHHHHHHHhCC----CHHHHHHHHHHHHHCCCeecC
Confidence 344555458999999999999 888999999999999999864
|
| >d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcription factor E/IIe-alpha, N-terminal domain domain: Transcription factor E/IIe-alpha, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=81.49 E-value=0.49 Score=32.80 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=37.4
Q ss_pred ChhHHHhh-cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 48 GVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 48 glfd~L~~-~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.|++.|-+ .+.+|=++||+++|+ ....+++.|..|...|++...
T Consensus 22 ~v~~~L~~~~~evtDe~iA~~tgi----~in~VRk~Ly~L~~~~L~~y~ 66 (88)
T d1q1ha_ 22 DVLRILLDKGTEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (88)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHhccCcCCHHHHHHHhCC----cHHHHHHHHHHHHhCCceEEE
Confidence 46776653 247999999999999 999999999999999999753
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=81.11 E-value=2.5 Score=31.17 Aligned_cols=84 Identities=11% Similarity=0.078 Sum_probs=51.0
Q ss_pred eEEEEcCCccHHHHHHHhhC--CCCeEEEecc-hHHHhhCCCCCCceEEECCCCCC-------CCCCcEEEeccccccCC
Q 016366 230 RLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES-------VPEGDAILMKWILHCWD 299 (390)
Q Consensus 230 ~iLDiG~G~G~~~~~l~~~~--p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~-------~p~~D~i~~~~vlh~~~ 299 (390)
+|+=+|+ |.++..+++.. .+..++++|. |+.++.+++.-.+.++.||..++ +..+|.++.. .+
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-----t~ 74 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV-----TG 74 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC-----CS
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhccc-----CC
Confidence 4666666 66666655533 2456788876 77777665444688999999872 2234777653 22
Q ss_pred hhHHHHHHHHHHHhCCCCcEE
Q 016366 300 DDHCLRILKNCYKAVPGNGKV 320 (390)
Q Consensus 300 d~~~~~~L~~~~~~L~pgG~l 320 (390)
+++.-.+.....+.+.+.-.+
T Consensus 75 ~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 75 KEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp CHHHHHHHHHHHHHTTCCCEE
T ss_pred cHHHHHHHHHHHHHcCCceEE
Confidence 333334556666778877443
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.76 E-value=2 Score=32.93 Aligned_cols=91 Identities=13% Similarity=0.096 Sum_probs=54.2
Q ss_pred cCCcceEEEEcCCccH-HHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCC-------CCC-cEEEeccc
Q 016366 225 FQNVERLVDVGGGFGV-TLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESV-------PEG-DAILMKWI 294 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~-~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~-------p~~-D~i~~~~v 294 (390)
.++..+||=.|+|.-. .+..+++. ...++++.|. +.-++.+++..--.++... .++. ..+ |.++...+
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~ 102 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELGADLVVNPL-KEDAAKFMKEKVGGVHAAVVTAV 102 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCSEEECTT-TSCHHHHHHHHHSSEEEEEESSC
T ss_pred CCCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcCcceecccc-cchhhhhcccccCCCceEEeecC
Confidence 5677889989988654 45555555 4568888886 6666666654322222211 1111 122 44433322
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
.. ..+....+.|+|+|++++.-.
T Consensus 103 ----~~----~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 103 ----SK----PAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp ----CH----HHHHHHHHHEEEEEEEEECCC
T ss_pred ----CH----HHHHHHHHHhccCCceEeccc
Confidence 11 568899999999999988653
|
| >d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Catabolite gene activator protein (CAP), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=80.01 E-value=0.47 Score=31.26 Aligned_cols=33 Identities=15% Similarity=0.381 Sum_probs=31.8
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
++|-+|||.-+|+ ....+.|.|+.|...|++..
T Consensus 29 ~lt~~~lA~~~G~----sRetvsr~L~~l~~~glI~~ 61 (69)
T d1i5za1 29 KITRQEIGQIVGC----SRETVGRILKMLEDQNLISA 61 (69)
T ss_dssp ECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 7999999999999 99999999999999999985
|