Citrus Sinensis ID: 016385

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
Protein Sequence
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIKYPPYK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHEEEEEEccHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccccEEEEEEEEEcccccEEEEEEEEEccccEEEEEEEEEccccccEEEEEEEEEEEEEEEEEccccccccEEEEEEEEcccccEEEEEEEEEccccccccccHHHHHHHHHHHHHccccccccEEcccccccccccccccEEEEEEEEEcccccccccccccccEEEEEEccccccEEccEEEccccccEEEEEEEEEEEcccccEEEEEEEEccccccccEEEEEEEEccccccccEEEEEEEEccccccccccEEEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHHHccccccccccEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccccEEEEEEEEEccccEEEEEEEEEEcccccEEEEEEEEEEcEccEEEEEEEEEEEEEEEEcccccccccEEEEEEEEcccccEEEEEEEEcccHcccccHHHHHHHHHHHHHHHHccccccEEEEccccccHHHccccccEEEEEEEEEEccccccccccccEEEEEEEEccccccEEccccccccccEEEEEEEEccEcccccEEEEEEEEccccccccccEEEEEEHHHccccccEEEEEEEccccccccccccEEEEEEEEEEcc
Coil and Loop (DISEMBL)
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVedskkilpaefypswvvfSHRQKLTWLNHHLEKLWPYVNEAASELIKSsvepvleqyRPFILSslkfskftlgtvapqftgvsiiedggsgvtMELEMQWDANSSIILAIKTRLGValpvqvknigftGVFRLIfrplvdefpgfaaVSYSLREKKKLDFKLKVvggdistipglsdsIEATIHDAIedsitwpvrkivpilpgdyselelkpvgtLEVKLVQAkgltnkdligksdpyavlfvrplpektkksktinndlnpiwNEHFEFIVEDESTQHLVVRIyddegiqsseliGCAQVRlcelepgkvKDVWLKLVKDLdvqrdtkyrgqvrikyppyk
Flexible Loop (DISEMBL)
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGdistipglsdsIEATIHDAiedsitwpvRKIVPILPGDYSELELKPVGTLEVKLVQAKgltnkdligksdpyAVLFVrplpektkksktinndlnPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCElepgkvkdVWLKLvkdldvqrdtkyrgqvrikyppyk
Low Complexity Region (SEG)
MgfffglvvglvvglgiivgfvRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGkvkdvwlklvkdldvQRDTKYRGQVRIKYPPYK
Disordered region (IsUnstruct)
**FFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP******KTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRI******
Disordered Region (DISOPRED)
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLK**************GQVRIKYPPYK
Disordered Region (DISEMBL)
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIKYPPYK
Disordered Region (DISPRO)
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIKYPPYK
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIKYPPYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	390	2.2.26 [Sep-21-2011]
Q8L706	560	Synaptotagmin-5 OS=Arabid	yes	no	0.997	0.694	0.782	0.0
A0JJX5	569	Synaptotagmin-4 OS=Arabid	no	no	0.987	0.676	0.741	1e-173
Q7XA06	540	Synaptotagmin-3 OS=Arabid	no	no	0.969	0.7	0.308	7e-53
Q9SKR2	541	Synaptotagmin-1 OS=Arabid	no	no	0.961	0.693	0.334	9e-53
B6ETT4	537	Synaptotagmin-2 OS=Arabid	no	no	0.966	0.702	0.316	3e-51
Q5DTI8	891	Extended synaptotagmin-3	yes	no	0.838	0.367	0.282	5e-29
Q5RAG2	1104	Extended synaptotagmin-1	yes	no	0.792	0.279	0.294	1e-27
Q5M7N9	889	Extended synaptotagmin-3	no	no	0.758	0.332	0.289	2e-27
Q9Z1X1	1088	Extended synaptotagmin-1	no	no	0.794	0.284	0.281	2e-27
A0FGR9	886	Extended synaptotagmin-3	yes	no	0.841	0.370	0.272	3e-27

>sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/391 (78%), Positives = 356/391 (91%), Gaps = 2/391 (0%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           MGF  G+V+GL+VG+ II+GFV+ EN+RSKLRSELA T+AAFARMTVEDS+K+LP EFYP
Sbjct: 1   MGFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKLTWLNHHL K+WPYV+EAASELIK+SVEPVLEQYRP I++SL FSK TLG
Sbjct: 61  SWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAIVASLTFSKLTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVS+I+   +G+T+EL+MQWD N +I+L +KT +GV+LP+QVKNIGFTGVFRL
Sbjct: 121 TVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IFRPLV++FP F AVS SLREKKKLDF LKVVGGDIS IPGLS++IE TI DA+EDSITW
Sbjct: 181 IFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSITW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK++PI+PGDYS+LELKPVG LEVKLVQAK LTNKDL+GKSDP+A +F+RPL EKTK+
Sbjct: 241 PVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKR 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SKTINNDLNPIWNEHFEF+VED STQHLVVRIYDDEG+Q+SELIGCAQ+RLCELEPGKVK
Sbjct: 301 SKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVRIK--YPPY 389
           DVWLKLVKDL++QRDTK RG+V ++  Y PY
Sbjct: 361 DVWLKLVKDLEIQRDTKNRGEVHLELLYIPY 391

May be involved in membrane trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1

 Score =  607 bits (1564), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 287/387 (74%), Positives = 340/387 (87%), Gaps = 2/387 (0%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           MGF FGL +G+ V  G++V F R  + RS  R++LA TIAAFARMTV+DS+K+LP +FYP
Sbjct: 1   MGFLFGLFIGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRKLLPGDFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKL WLN  LEK+WPYVNEAASELIKSSVEPVLEQY P +L+SLKFSKFTLG
Sbjct: 61  SWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAMLASLKFSKFTLG 120

Query: 121 TVAPQFTGVSIIED--GGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVF 178
           TVAPQFTGVSI+E   G +G+TMELEMQWD N  I+L +KT LGV+LP++VKNIGFTGVF
Sbjct: 121 TVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTGVF 180

Query: 179 RLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSI 238
           RLIF+PLVDEFP F A+SYSLREKK LDF LKV+GG++++IPG+SD+IE TI DAIEDSI
Sbjct: 181 RLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIEDSI 240

Query: 239 TWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT 298
           TWPVRKI+PILPGDYS+LELKPVG L+VK+VQAK L NKD+IGKSDPYA++F+RPLP++T
Sbjct: 241 TWPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRT 300

Query: 299 KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK 358
           KK+KTI+N LNPIWNEHFEFIVED STQHL VR++DDEG+ SS+LIG AQV L EL PGK
Sbjct: 301 KKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELVPGK 360

Query: 359 VKDVWLKLVKDLDVQRDTKYRGQVRIK 385
           VKD+WLKLVKDL++QRDTK RGQV+++
Sbjct: 361 VKDIWLKLVKDLEIQRDTKNRGQVQLE 387

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1

 Score =  208 bits (529), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 122/396 (30%), Positives = 212/396 (53%), Gaps = 18/396 (4%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           +GF  G+ +GL++G  +++    S       R  + T+I+    +  +            
Sbjct: 11  IGFVIGIPIGLILGFFVLIYSQPSHQEYPPARPLVETSISVLLDLLPDIP---------- 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQY-RPFILSSLKFSKFTL 119
            W+     +++ W N  +  +WPY+++A   +I+SSV+P+   Y   F + S++F   +L
Sbjct: 61  LWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLSL 120

Query: 120 GTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFR 179
           GT+ P   GV   E     +  E  ++W  N +I+L +K  L + + VQ+ ++ F  + R
Sbjct: 121 GTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKV-LSLRIRVQLVDLQFFAIVR 179

Query: 180 LIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSIT 239
           +  +PL+  FP F  V  SL EK  +DF LKV+GGD+ +IPGL   ++ TI   +     
Sbjct: 180 VALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSMYH 239

Query: 240 WPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK 299
           WP    +PIL    + ++ KPVG L V +++A+ L  KDL+G SDPY  L +       K
Sbjct: 240 WPQVLEIPILDSSTASVK-KPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAK 298

Query: 300 KSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV 359
           K+     +LNP WNEHF+ IV+D ++Q L + ++D + +   + +G   + L ++ PG+ 
Sbjct: 299 KTTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGER 358

Query: 360 KDVWLKLVKDLDVQRDT---KYRG--QVRIKYPPYK 390
           K+  L L+K+ +V  D+   K RG  +V ++Y P++
Sbjct: 359 KEFNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFR 394

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2

 Score =  207 bits (528), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 132/395 (33%), Positives = 212/395 (53%), Gaps = 20/395 (5%)

Query: 2   GFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPS 61
           GF  G+ +GLV+G  + V  + ++    ++RS       A  RM  E           P 
Sbjct: 12  GFGVGISLGLVIGYVLFVYLLPNDVKDPEIRSIADQDPKAMLRMLPE----------IPL 61

Query: 62  WVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRP-FILSSLKFSKFTLG 120
           WV      ++ W+N  LE +WPY+++A  +  K+  +P++E+  P + + S++F   TLG
Sbjct: 62  WVKNPDFDRVDWINRFLEYMWPYLDKAICKTAKNIAKPIIEEQIPKYKIDSVEFETLTLG 121

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           ++ P F G+ +       + ME  ++W AN +I++AIK   G+   VQV ++      R+
Sbjct: 122 SLPPTFQGMKVYLTDEKELIMEPCLKWAANPNILVAIKA-FGLKATVQVVDLQVFAQPRI 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
             +PLV  FP FA +  SL EK  +DF LK+ G D+ +IPGL   ++  I D + +   W
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVANMYLW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           P   +VPIL  D ++   +PVG + VK+V+A GL  KDL+G +DP+  + +      +KK
Sbjct: 241 PKTLVVPIL--DPAKAFRRPVGIVHVKVVRAVGLRKKDLMGGADPFVKIKLSEDKIPSKK 298

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           +   + +LNP WNE F+F V D  TQ L   +YD E + + E +G   + L E+ P + K
Sbjct: 299 TTVKHKNLNPEWNEEFKFSVRDPQTQVLEFSVYDWEQVGNPEKMGMNVLALKEMVPDEHK 358

Query: 361 DVWLKLVKDLDVQRD----TKYRGQVRIK--YPPY 389
              L+L K LD   D     KYRG++ ++  Y P+
Sbjct: 359 AFTLELRKTLDGGEDGQPPDKYRGKLEVELLYKPF 393

Plays an important role in maintaining plasma membrane integrity during freezing and osmotic stresses. May function in membrane resealing during calcium-dependent freezing tolerance. May regulate endocytosis and endosome recycling at the plasma membrane and cell-to-cell trafficking of cabbage leaf curl virus (CaLCuV) and tobacco mosaic virus (TMV) movement proteins via plasmodesmata.

Arabidopsis thaliana (taxid: 3702)

>sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1

 Score =  202 bits (514), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/395 (31%), Positives = 211/395 (53%), Gaps = 18/395 (4%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           +GF FG  +G+V+G  + + F  ++    +++  +       A M  E           P
Sbjct: 11  IGFGFGTTIGIVIGYYLFIYFQSTDVEDPEIKPLVELDSETIATMFPE----------IP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVL-EQYRPFILSSLKFSKFTL 119
            WV      ++ WLN  +  +WPY+++A  ++ KS  +P++ EQ   + + S++F   TL
Sbjct: 61  MWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLTL 120

Query: 120 GTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFR 179
           G++ P F G+ +       + MEL ++W  N +II+  K   G+   VQV ++      R
Sbjct: 121 GSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKA-FGLKATVQVIDLQVYATPR 179

Query: 180 LIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSIT 239
           +  +PLV  FP FA +  SL +K ++DF LK++G D+  IPGL   ++  I D + +   
Sbjct: 180 ITLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMYL 239

Query: 240 WPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK 299
           WP    V I+  D S+   KPVG L VK+++A  L  KDL+G SDPY  L +       K
Sbjct: 240 WPKTLNVQIM--DPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPGK 297

Query: 300 KSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV 359
           K+   +++LNP WNE F+ +V++  +Q L + +YD E +   + IG   ++L +L P + 
Sbjct: 298 KTVVKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEEP 357

Query: 360 KDVWLKLVKDLDVQR--DTKYRGQ--VRIKYPPYK 390
           K + L+L+K ++ +     K RGQ  V ++Y P+K
Sbjct: 358 KLMTLELLKSMEPKEPVSEKSRGQLVVEVEYKPFK 392

May play an important role in regulating an unconventional protein trafficking from the cytosol to the extracelluar matrix.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5DTI8|ESYT3_MOUSE Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2

 Score =  129 bits (323), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 169/350 (48%), Gaps = 23/350 (6%)

Query: 28  RSKLRSELATTIAAFARMTVEDS--KKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYV 85
           R   R +L    AAF  +  E     + L  +  P+W+ F   +++ W N  + ++WPY+
Sbjct: 77  RRNRRGKLGRLEAAFEFLEHEREFISRELRGQHLPAWIHFPDVERVEWANKIIIQIWPYL 136

Query: 86  NEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED--GGSGVTMEL 143
           +      I+  +EP + + +   L +  F+K   G   P+  GV +  D      VT++L
Sbjct: 137 SMIMENKIREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPKVNGVKVHTDKRNRRKVTLDL 195

Query: 144 EMQWDANSSIILAI-KTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREK 202
           ++ +  +  I + + K R GV+       +   G  R+I  PL+ + P   AV+    +K
Sbjct: 196 QICYIGDCEISVELQKIRGGVS------GVQLQGTLRVILEPLLVDKPFIGAVTVFFLQK 249

Query: 203 KKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPG-DYSELELK-P 260
             L      +  ++  +PG+++  ++ + D I   +  P R  VP+  G D + L +  P
Sbjct: 250 PHLQINWTGLT-NLLDMPGINELSDSLLEDLIAAHLVLPNRVTVPVKKGLDVTNLRVPLP 308

Query: 261 VGTLEVKLVQAKGLTNKD----LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 316
            G + V L++AK L  KD    L GKSDPYA + +     +  +S+TI  +LNP WNE F
Sbjct: 309 CGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIG---LQHCRSRTIYKNLNPTWNEVF 365

Query: 317 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
           EF+V +   Q L V +Y DE     + +G  Q+ L ++   +V D W  L
Sbjct: 366 EFMVYEVPGQDLEVDLY-DEDTDKDDFLGSLQICLGDVMKNRVVDEWFAL 414

May play a role as calcium-regulated intrinsic membrane protein.

Mus musculus (taxid: 10090)

>sp|Q5RAG2|ESYT1_PONAB Extended synaptotagmin-1 OS=Pongo abelii GN=ESYT1 PE=2 SV=2

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 168/346 (48%), Gaps = 37/346 (10%)

Query: 6   GLVVGLVV-GLGIIVGF--VRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFY--- 59
           GL VG V+ GL + +G+  VR E  RS LR+         AR  ++D +++     Y   
Sbjct: 75  GLSVGFVLFGLALYLGWRRVRDEKERS-LRA---------ARQLLDDEEQLTAKTLYMSH 124

Query: 60  ---PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSK 116
              P+WV F   +K  WLN  + ++WP++ +   +L+  +V P +    P  L +  F++
Sbjct: 125 RELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPH-LQTFTFTR 183

Query: 117 FTLGTVAPQFTGVSIIE-DGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFT 175
             LG    +  GV +        + ++L + +  +  I + +K     A    VK +   
Sbjct: 184 VELGEKPLRIIGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKA---GVKGMQLH 240

Query: 176 GVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIE 235
           GV R+I  PL+ + P   AVS     +  LD     +  ++  IPGLS   +  I D+I 
Sbjct: 241 GVLRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGM-TNLLDIPGLSSLSDTMIMDSIA 299

Query: 236 DSITWPVRKIVPILPGDYSELELK---PVGTLEVKLVQAKGLTNKD------LIGKSDPY 286
             +  P R +VP++P      +L+   P G + + L+ A+GLT+KD      + GKSDPY
Sbjct: 300 AFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLTSKDKYVKGLIEGKSDPY 359

Query: 287 AVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 332
           A   VR L  +T  S+ I+ +LNP W E +E +V +   Q + V +
Sbjct: 360 A--LVR-LGTQTFCSRVIDEELNPQWGETYEVMVHEVPGQEIEVEV 402

May play a role as calcium-regulated intrinsic membrane protein.

Pongo abelii (taxid: 9601)

>sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 151/318 (47%), Gaps = 22/318 (6%)

Query: 60  PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTL 119
           P+WV F   +++ WLN  + ++WPY+     ++ +  VEP++       L +  F+K  L
Sbjct: 148 PAWVNFPDVERVEWLNKVVGQMWPYIGMYVEKMFQDKVEPLVRSSSAH-LKAFTFTKVHL 206

Query: 120 GTVAPQFTGVSIIEDG--GSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGV 177
           G   P+  GV           V ++L++ ++ +  I + +K          VK +   G 
Sbjct: 207 GEKFPRINGVKSYTKNVDKREVILDLQLSYNGDVEINVEVKKMCKAG----VKGVQLHGT 262

Query: 178 FRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDS 237
            R+I  PL+ + P   AV+    ++  LD     +  ++  IPG+SD  ++ I D I   
Sbjct: 263 LRVILAPLLPDLPFVGAVTMFFIQRPHLDINWTGLT-NVLEIPGVSDFSDSMIVDMIASH 321

Query: 238 ITWPVRKIVPILPGDYSELELK---PVGTLEVKLVQAKGLTNKD------LIGKSDPYAV 288
           +  P R  VP L       +L+   P G L + L++A+ L  KD      + GKSDPYAV
Sbjct: 322 LVLPNRFTVP-LSSQVQAAQLRFPLPHGVLRLHLIEAEDLIPKDNYLKGIIRGKSDPYAV 380

Query: 289 LFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQ 348
           L +     +  KS+TI  +LNP W E +EF+V +   Q L V +Y DE     + +G   
Sbjct: 381 LRIG---NQNFKSRTIKENLNPKWGEMYEFVVHEVPGQDLEVDLY-DEDPDKDDFLGSLV 436

Query: 349 VRLCELEPGKVKDVWLKL 366
           + L  +   +V D W  L
Sbjct: 437 IGLEGVMQDRVVDEWFPL 454

May play a role as calcium-regulated intrinsic membrane protein.

Xenopus tropicalis (taxid: 8364)

>sp|Q9Z1X1|ESYT1_RAT Extended synaptotagmin-1 OS=Rattus norvegicus GN=Esyt1 PE=2 SV=1

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 168/345 (48%), Gaps = 35/345 (10%)

Query: 6   GLVVGLVV-GLGIIVGFVRSENARSK-LRSELATTIAAFARMTVEDSKKILPAEFY---- 59
           GL VG V+ GL + +G+ R  + + + LR+         AR  ++D ++I     Y    
Sbjct: 67  GLSVGFVLFGLALYLGWRRVRDGKERSLRA---------ARQLLDDEERITAETLYMSHR 117

Query: 60  --PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKF 117
             P+WV F   +K  WLN  + ++WP++ +   +L+  +V P +    P  L +  F++ 
Sbjct: 118 ELPAWVSFPDVEKAEWLNKIVVQVWPFLGQYMEKLLAETVAPAVRGANPH-LQTFTFTRV 176

Query: 118 TLGTVAPQFTGVSII-EDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTG 176
            LG    +  GV +        + ++L + +  +  I + +K     A    VK +   G
Sbjct: 177 ELGEKPVRIIGVKVHPSQRKDQILLDLNVSYVGDLQIDVEVKKYFCKA---GVKGMQLHG 233

Query: 177 VFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIED 236
           V R+I  PL+ + P   AVS    ++  LD     +  ++  IPGLS   +  I D+I  
Sbjct: 234 VLRVILEPLIGDLPIVGAVSMFFIKRPTLDINWTGM-TNLLDIPGLSSLSDTMIMDSIAA 292

Query: 237 SITWPVRKIVPILPGDYSELELK---PVGTLEVKLVQAKGLTNKD------LIGKSDPYA 287
            +  P R +VP++P      +L+   P G + + L+ A+GL++KD      + GKSDPYA
Sbjct: 293 FLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYA 352

Query: 288 VLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 332
           ++ V     +T  S+ I+ +LNP W E +E IV +   Q + V +
Sbjct: 353 LVRVG---TQTFCSRVIDEELNPHWGETYEVIVHEVPGQEIEVEV 394

May play a role as calcium-regulated intrinsic membrane protein.

Rattus norvegicus (taxid: 10116)

>sp|A0FGR9|ESYT3_HUMAN Extended synaptotagmin-3 OS=Homo sapiens GN=ESYT3 PE=2 SV=1

 Score =  123 bits (308), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 163/349 (46%), Gaps = 21/349 (6%)

Query: 28  RSKLRSELATTIAAFARMTVEDS--KKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYV 85
           R   R +L    AAF  +  E     + L  +  P+W+ F   +++ W N  + + WPY+
Sbjct: 73  RRNRRGKLGRLAAAFEFLDNEREFISRELRGQHLPAWIHFPDVERVEWANKIISQTWPYL 132

Query: 86  NEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSG--VTMEL 143
           +       +  +EP + + +   L +  F+K   G   P+  GV    +  +   VT++L
Sbjct: 133 SMIMESKFREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPRVNGVKAHTNTCNRRRVTVDL 191

Query: 144 EMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKK 203
           ++ +  +  I + ++      +   V  I   G  R+I  PL+ + P   AV+    +K 
Sbjct: 192 QICYIGDCEISVELQ-----KIQAGVNGIQLQGTLRVILEPLLVDKPFVGAVTVFFLQKP 246

Query: 204 KLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPG-DYSELELK-PV 261
            L      +  ++   PG++D  ++ + D I   +  P R  VP+  G D + L    P 
Sbjct: 247 HLQINWTGLT-NLLDAPGINDVSDSLLEDLIATHLVLPNRVTVPVKKGLDLTNLRFPLPC 305

Query: 262 GTLEVKLVQAKGLTNKD----LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFE 317
           G + V L++A+ L  KD    L GKSDPYA + +     +  +S+TI  +LNP WNE FE
Sbjct: 306 GVIRVHLLEAEQLAQKDNFLGLRGKSDPYAKVSIG---LQHFRSRTIYRNLNPTWNEVFE 362

Query: 318 FIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
           F+V +   Q L V +Y DE     + +G  Q+ L ++   +V D W  L
Sbjct: 363 FMVYEVPGQDLEVDLY-DEDTDRDDFLGSLQICLGDVMTNRVVDEWFVL 410

May play a role as calcium-regulated intrinsic membrane protein.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
118484311	566	unknown [Populus trichocarpa]	0.997	0.687	0.803	0.0
224144112	566	plant synaptotagmin [Populus trichocarpa	0.997	0.687	0.800	0.0
224120508	566	plant synaptotagmin [Populus trichocarpa	0.997	0.687	0.803	0.0
356562953	565	PREDICTED: extended synaptotagmin-1-like	0.997	0.688	0.797	0.0
186478159	560	calcium-dependent lipid-binding domain-c	0.997	0.694	0.782	0.0
255579863	558	calcium lipid binding protein, putative	0.976	0.682	0.800	0.0
449443041	567	PREDICTED: synaptotagmin-5-like [Cucumis	0.997	0.686	0.775	0.0
357478297	566	Synaptotagmin-1 [Medicago truncatula] gi	0.961	0.662	0.806	0.0
356562955	557	PREDICTED: extended synaptotagmin-1-like	0.976	0.684	0.785	1e-180
297843340	560	plant synaptotagmin [Arabidopsis lyrata	0.997	0.694	0.795	1e-180

>gi|118484311|gb|ABK94033.1| unknown [Populus trichocarpa]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/391 (80%), Positives = 353/391 (90%), Gaps = 2/391 (0%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           M FF GL+ GL VGL +IVGFV+SENARSKLRSELATTIAAFARMTV+DS+KILPAEFYP
Sbjct: 1   MSFFVGLIFGLAVGLALIVGFVKSENARSKLRSELATTIAAFARMTVDDSRKILPAEFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKL WLN HL K+WPYV++AAS LIK+S+EPVLEQYRP ILSSLKFSKFTLG
Sbjct: 61  SWVVFSQRQKLDWLNQHLTKIWPYVDQAASGLIKTSLEPVLEQYRPVILSSLKFSKFTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVSIIEDGGSG+TMELEM WD N SIIL IKTR GV+LPVQVK+IGFTGVFRL
Sbjct: 121 TVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIILGIKTRFGVSLPVQVKDIGFTGVFRL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IF+PLV EFP F A+ YSLR+KKK+DF LKV+GGDIS IPGL D+I+ TI +A+EDSITW
Sbjct: 181 IFKPLVPEFPCFGAICYSLRQKKKMDFTLKVIGGDISAIPGLDDAIQETIRNAVEDSITW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK+VPILPGDYS+LELKPVG LEVKLVQAK LTNKDLIGKSDP+A L++RPLP+KTK 
Sbjct: 241 PVRKVVPILPGDYSDLELKPVGILEVKLVQAKNLTNKDLIGKSDPFAKLYIRPLPDKTKT 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SK INNDLNPIWNEHFEF+VED STQHLVV++YDDEG+Q+SEL+GCAQV+L ELEPGKVK
Sbjct: 301 SKIINNDLNPIWNEHFEFVVEDASTQHLVVKVYDDEGLQASELLGCAQVKLSELEPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVRIK--YPPY 389
           DVWLKLVKDL+VQRD K RGQV ++  Y P+
Sbjct: 361 DVWLKLVKDLEVQRDNKNRGQVHLELLYCPF 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144112|ref|XP_002325190.1| plant synaptotagmin [Populus trichocarpa] gi|222866624|gb|EEF03755.1| plant synaptotagmin [Populus trichocarpa]

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/391 (80%), Positives = 353/391 (90%), Gaps = 2/391 (0%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           M FF GL+ GL VGL +IVGFV+SENARSKLRSELATTIAAFARMTV+DS+KILPAEFYP
Sbjct: 1   MSFFVGLIFGLAVGLALIVGFVKSENARSKLRSELATTIAAFARMTVDDSRKILPAEFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKL WLN HL K+WPYV++AAS LIK+S+EPVLEQYRP ILSSLKFSKFTLG
Sbjct: 61  SWVVFSQRQKLDWLNQHLTKIWPYVDQAASGLIKASLEPVLEQYRPVILSSLKFSKFTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVSIIEDGGSG+TMELEM WD N SIIL IKTR GV+LPVQVK+IGFTGVF+L
Sbjct: 121 TVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIILGIKTRFGVSLPVQVKDIGFTGVFKL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IF+PLV EFP F A+ YSLR+KKK+DF LKV+GGDIS IPGL D+I+ TI +A+EDSITW
Sbjct: 181 IFKPLVPEFPCFGAICYSLRQKKKMDFTLKVIGGDISAIPGLDDAIQETIRNAVEDSITW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK+VPILPGDYS+LELKPVG LEVKLVQAK LTNKDLIGKSDP+A L++RPLP+KTK 
Sbjct: 241 PVRKVVPILPGDYSDLELKPVGILEVKLVQAKDLTNKDLIGKSDPFAKLYIRPLPDKTKT 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SK INNDLNPIWNEHFEF+VED STQHLVV++YDDEG+Q+SEL+GCAQV+L ELEPGKVK
Sbjct: 301 SKIINNDLNPIWNEHFEFVVEDASTQHLVVKVYDDEGLQASELLGCAQVKLSELEPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVRIK--YPPY 389
           DVWLKLVKDL+VQRD K RGQV ++  Y P+
Sbjct: 361 DVWLKLVKDLEVQRDNKNRGQVHLELLYCPF 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120508|ref|XP_002331065.1| plant synaptotagmin [Populus trichocarpa] gi|222872995|gb|EEF10126.1| plant synaptotagmin [Populus trichocarpa]

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/391 (80%), Positives = 352/391 (90%), Gaps = 2/391 (0%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           M FF GL++GL VGL +IVGFV+SENARSKLRSELA  IAAFARMTVEDS+KILPAE+YP
Sbjct: 1   MSFFVGLIIGLAVGLALIVGFVKSENARSKLRSELAIAIAAFARMTVEDSRKILPAEYYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKL WLN HL K+WPYV++AAS LIK SVEPVLEQYRP ILSSLKFSKFTLG
Sbjct: 61  SWVVFSQRQKLDWLNQHLTKIWPYVDQAASGLIKDSVEPVLEQYRPIILSSLKFSKFTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVSIIEDGGSG+TMELEM WD N SIIL IKTRLGV+LPVQVK+IGFTGVFRL
Sbjct: 121 TVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIILDIKTRLGVSLPVQVKDIGFTGVFRL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IF+PLV EFP F AV  SLR+KKK+DFKLKVVGGDIS IPGL D+I+ TI +A+EDSITW
Sbjct: 181 IFKPLVAEFPCFGAVCCSLRQKKKMDFKLKVVGGDISAIPGLDDAIQETIQNAVEDSITW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK+VPILPGDYS+LELKPVG LEVKLVQAK LTNKDLIGKSDP+A L++RPLP+KTK 
Sbjct: 241 PVRKVVPILPGDYSDLELKPVGILEVKLVQAKDLTNKDLIGKSDPFAKLYIRPLPDKTKT 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           +K INNDLNPIWNEHFEF+VED +TQHLVV+IYDDEGIQ++EL+GCAQV+L ELEPGKVK
Sbjct: 301 TKIINNDLNPIWNEHFEFVVEDATTQHLVVKIYDDEGIQAAELLGCAQVKLNELEPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVRIK--YPPY 389
           D+WLKLVKDL+VQRD K RGQV ++  Y P+
Sbjct: 361 DLWLKLVKDLEVQRDNKNRGQVHLELLYRPF 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562953|ref|XP_003549732.1| PREDICTED: extended synaptotagmin-1-like isoform 1 [Glycine max]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/391 (79%), Positives = 354/391 (90%), Gaps = 2/391 (0%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           MGF FG+VVG++VGL IIVGFVR EN+R+  RS+LATT+AAFARMTVEDS+KILP +FYP
Sbjct: 1   MGFIFGVVVGIIVGLAIIVGFVRGENSRAAQRSQLATTVAAFARMTVEDSRKILPPQFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS  QKL+WLN HL K+WPYVNEAASELIK+SVEP+LE+YRP +L++LKFSKFTLG
Sbjct: 61  SWVVFSSSQKLSWLNSHLTKIWPYVNEAASELIKASVEPILEEYRPVVLAALKFSKFTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVSIIEDGG GVTMELEMQWD N SIIL IKT LGVALPVQVKNIGFTGVFRL
Sbjct: 121 TVAPQFTGVSIIEDGGDGVTMELEMQWDGNPSIILDIKTLLGVALPVQVKNIGFTGVFRL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IF+PLVDEFPGF AVSYSLR+KKKLDF LKV+GGDIS IPGL D+IE  I DA+EDSITW
Sbjct: 181 IFKPLVDEFPGFGAVSYSLRQKKKLDFTLKVIGGDISAIPGLYDAIEGAIRDAVEDSITW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK+VPILPGDYS+LELKP G LEVKLVQAK LTNKD+IGKSDPYAV+++RPL E+ KK
Sbjct: 241 PVRKVVPILPGDYSDLELKPEGILEVKLVQAKELTNKDIIGKSDPYAVVYIRPLRERMKK 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SKTINNDLNPIWNEHFEF+VED STQH+ V++YD EG+QSSELIGCAQ++L EL+PGKVK
Sbjct: 301 SKTINNDLNPIWNEHFEFVVEDVSTQHVTVKVYDSEGLQSSELIGCAQLQLSELQPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVRIK--YPPY 389
           DVWLKLVKDL++QRDTK RGQV ++  Y P+
Sbjct: 361 DVWLKLVKDLEIQRDTKNRGQVHLELLYCPF 391

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186478159|ref|NP_172041.2| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana] gi|75301121|sp|Q8L706.1|SYT5_ARATH RecName: Full=Synaptotagmin-5; AltName: Full=NTMC2T2.1; AltName: Full=Synaptotagmin E gi|22655178|gb|AAM98179.1| Ca2+-dependent lipid-binding protein, putative [Arabidopsis thaliana] gi|31711980|gb|AAP68346.1| At1g05500 [Arabidopsis thaliana] gi|110737090|dbj|BAF00497.1| putative Ca2+-dependent lipid-binding protein [Arabidopsis thaliana] gi|332189725|gb|AEE27846.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/391 (78%), Positives = 356/391 (91%), Gaps = 2/391 (0%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           MGF  G+V+GL+VG+ II+GFV+ EN+RSKLRSELA T+AAFARMTVEDS+K+LP EFYP
Sbjct: 1   MGFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKLTWLNHHL K+WPYV+EAASELIK+SVEPVLEQYRP I++SL FSK TLG
Sbjct: 61  SWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAIVASLTFSKLTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVS+I+   +G+T+EL+MQWD N +I+L +KT +GV+LP+QVKNIGFTGVFRL
Sbjct: 121 TVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IFRPLV++FP F AVS SLREKKKLDF LKVVGGDIS IPGLS++IE TI DA+EDSITW
Sbjct: 181 IFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSITW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK++PI+PGDYS+LELKPVG LEVKLVQAK LTNKDL+GKSDP+A +F+RPL EKTK+
Sbjct: 241 PVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKR 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SKTINNDLNPIWNEHFEF+VED STQHLVVRIYDDEG+Q+SELIGCAQ+RLCELEPGKVK
Sbjct: 301 SKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVRIK--YPPY 389
           DVWLKLVKDL++QRDTK RG+V ++  Y PY
Sbjct: 361 DVWLKLVKDLEIQRDTKNRGEVHLELLYIPY 391

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579863|ref|XP_002530768.1| calcium lipid binding protein, putative [Ricinus communis] gi|223529684|gb|EEF31628.1| calcium lipid binding protein, putative [Ricinus communis]

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/391 (80%), Positives = 350/391 (89%), Gaps = 10/391 (2%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           M FFFGLV+GL VGL I+VGFV+SENARSK RSELA T+AAFARMTVEDS+KILP+EFYP
Sbjct: 1   MSFFFGLVIGLAVGLAIVVGFVKSENARSKRRSELARTVAAFARMTVEDSRKILPSEFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SW        LTWLN HL K+WPYVNEAASELIK+SVEPVLEQYRP ILSSLKFSK TLG
Sbjct: 61  SW--------LTWLNLHLTKIWPYVNEAASELIKASVEPVLEQYRPIILSSLKFSKLTLG 112

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVSIIEDGGSG+TMELEM WD N SI+L IKTRLGV+LPVQVKNIGFTGVFRL
Sbjct: 113 TVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIVLDIKTRLGVSLPVQVKNIGFTGVFRL 172

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IF+PLV+EFP F AV +SLR+KKKLDF LKV+GGDISTIPG+ D+IE TI DAIEDSITW
Sbjct: 173 IFKPLVNEFPCFGAVCFSLRQKKKLDFTLKVIGGDISTIPGIYDAIEGTIRDAIEDSITW 232

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK++PILPGDYS+LELKPVG LEVKLVQAK LTNKD+IGKSDPYA L++RP+ ++ K 
Sbjct: 233 PVRKVIPILPGDYSDLELKPVGMLEVKLVQAKELTNKDIIGKSDPYAELYIRPIRDRIKT 292

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SKTINNDLNPIWNEHFEFIVED STQHLVV+I+DDEG+QSSELIGCAQV+LCEL+PGKVK
Sbjct: 293 SKTINNDLNPIWNEHFEFIVEDASTQHLVVKIFDDEGLQSSELIGCAQVQLCELQPGKVK 352

Query: 361 DVWLKLVKDLDVQRDTKYRGQVRIK--YPPY 389
           DVWLKLVKDL+VQRD + RGQV ++  Y P+
Sbjct: 353 DVWLKLVKDLEVQRDNRNRGQVHLELLYCPF 383

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443041|ref|XP_004139289.1| PREDICTED: synaptotagmin-5-like [Cucumis sativus] gi|449517890|ref|XP_004165977.1| PREDICTED: synaptotagmin-5-like [Cucumis sativus]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/392 (77%), Positives = 351/392 (89%), Gaps = 3/392 (0%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           M F  GLV+GL VGLG++VGFV+SENARSK R++LA TIAAFARMTVEDS+K+LP ++YP
Sbjct: 1   MAFVLGLVLGLFVGLGLVVGFVKSENARSKRRADLAATIAAFARMTVEDSRKLLPPQYYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKLTWLN HL K+WPYVNEAAS+LIK+SVEPVLEQYRP ILSSLKFS+FTLG
Sbjct: 61  SWVVFSQRQKLTWLNQHLTKIWPYVNEAASDLIKASVEPVLEQYRPIILSSLKFSRFTLG 120

Query: 121 TVAPQFTGVSIIEDGGS-GVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFR 179
           TVAPQ TG+SIIEDGG+ G+TME EMQWD N SIIL IKTRLGVALPVQVKN+GFTGVFR
Sbjct: 121 TVAPQLTGISIIEDGGTDGITMEFEMQWDGNQSIILDIKTRLGVALPVQVKNLGFTGVFR 180

Query: 180 LIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSIT 239
           LIF+PLVDEFP F AV +SLR+KKKLDF LKV+GGDIS IPGL  ++E TI DA+EDSIT
Sbjct: 181 LIFKPLVDEFPCFGAVCFSLRQKKKLDFTLKVIGGDISAIPGLYSALEGTIRDAVEDSIT 240

Query: 240 WPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK 299
           WPVRK++PI+PGDYS+LELKPVG LEVKLVQAK LTNKD+IGKSDPYA L++RPL ++ K
Sbjct: 241 WPVRKVIPIIPGDYSDLELKPVGILEVKLVQAKELTNKDVIGKSDPYAELYIRPLRDRMK 300

Query: 300 KSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV 359
            SK INNDLNP+WNEHFEF+VEDESTQHLVV++YDDEG+Q+SELIGCAQ++L EL+PGKV
Sbjct: 301 TSKIINNDLNPVWNEHFEFVVEDESTQHLVVKVYDDEGLQASELIGCAQIQLSELQPGKV 360

Query: 360 KDVWLKLVKDLDVQRDTKYRGQVRIK--YPPY 389
           KDVWLKLVKDL+V RD K RGQV ++  Y P+
Sbjct: 361 KDVWLKLVKDLEVIRDNKNRGQVHLELLYCPF 392

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478297|ref|XP_003609434.1| Synaptotagmin-1 [Medicago truncatula] gi|355510489|gb|AES91631.1| Synaptotagmin-1 [Medicago truncatula]

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/377 (80%), Positives = 342/377 (90%), Gaps = 2/377 (0%)

Query: 15  LGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWL 74
           L II+ FVRSEN+RS  RS+LATTIAAFARMTVEDS+K+LP++FYPSWVVFS+RQKLTWL
Sbjct: 15  LAIIIAFVRSENSRSARRSQLATTIAAFARMTVEDSRKLLPSQFYPSWVVFSNRQKLTWL 74

Query: 75  NHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED 134
           N HL K+WPYVNEAASELIK+S EP+LE+YRP ILS+LKFSKFTLGTVAPQFTGVSIIED
Sbjct: 75  NSHLTKIWPYVNEAASELIKTSAEPILEEYRPMILSALKFSKFTLGTVAPQFTGVSIIED 134

Query: 135 GGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAA 194
           GG GVTMELE+QWD N SIIL IKT +G+ALPVQVKN+GFTGVFRLIF+PLV+EFPGF A
Sbjct: 135 GGDGVTMELEVQWDGNPSIILDIKTLVGLALPVQVKNVGFTGVFRLIFKPLVNEFPGFGA 194

Query: 195 VSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYS 254
           V YSLR+KKKLDF LKV+GGDISTIPGL D+IE  I DA+EDSITWPVRKIVPILPGDYS
Sbjct: 195 VCYSLRQKKKLDFTLKVIGGDISTIPGLYDAIEGAIRDAVEDSITWPVRKIVPILPGDYS 254

Query: 255 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNE 314
           +LELKPVG LEVKLVQAK LTNKD+IGKSDPYAVL++RPL  +TKKSKTINNDLNPIWNE
Sbjct: 255 DLELKPVGILEVKLVQAKELTNKDIIGKSDPYAVLYIRPLRNRTKKSKTINNDLNPIWNE 314

Query: 315 HFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQR 374
           HFEFIVED STQHL V++YDDEG+QSSELIGC  ++L ELEPGK+KDVWLKLVKDL++QR
Sbjct: 315 HFEFIVEDASTQHLFVKVYDDEGLQSSELIGCTDIKLSELEPGKIKDVWLKLVKDLEIQR 374

Query: 375 DTKYRGQVRIK--YPPY 389
           D K RGQV ++  Y PY
Sbjct: 375 DNKNRGQVHLELLYCPY 391

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562955|ref|XP_003549733.1| PREDICTED: extended synaptotagmin-1-like isoform 2 [Glycine max]

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 307/391 (78%), Positives = 348/391 (89%), Gaps = 10/391 (2%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           MGF FG+VVG++VGL IIVGFVR EN+R+  RS+LATT+AAFARMTVEDS+KILP +FYP
Sbjct: 1   MGFIFGVVVGIIVGLAIIVGFVRGENSRAAQRSQLATTVAAFARMTVEDSRKILPPQFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SW        LTWLN HL K+WPYVNEAASELIK+SVEP+LE+YRP +L++LKFSKFTLG
Sbjct: 61  SW--------LTWLNSHLTKIWPYVNEAASELIKASVEPILEEYRPVVLAALKFSKFTLG 112

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVSIIEDGG GVTMELEMQWD N SIIL IKT LGVALPVQVKNIGFTGVFRL
Sbjct: 113 TVAPQFTGVSIIEDGGDGVTMELEMQWDGNPSIILDIKTLLGVALPVQVKNIGFTGVFRL 172

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IF+PLVDEFPGF AVSYSLR+KKKLDF LKV+GGDIS IPGL D+IE  I DA+EDSITW
Sbjct: 173 IFKPLVDEFPGFGAVSYSLRQKKKLDFTLKVIGGDISAIPGLYDAIEGAIRDAVEDSITW 232

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK+VPILPGDYS+LELKP G LEVKLVQAK LTNKD+IGKSDPYAV+++RPL E+ KK
Sbjct: 233 PVRKVVPILPGDYSDLELKPEGILEVKLVQAKELTNKDIIGKSDPYAVVYIRPLRERMKK 292

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SKTINNDLNPIWNEHFEF+VED STQH+ V++YD EG+QSSELIGCAQ++L EL+PGKVK
Sbjct: 293 SKTINNDLNPIWNEHFEFVVEDVSTQHVTVKVYDSEGLQSSELIGCAQLQLSELQPGKVK 352

Query: 361 DVWLKLVKDLDVQRDTKYRGQVRIK--YPPY 389
           DVWLKLVKDL++QRDTK RGQV ++  Y P+
Sbjct: 353 DVWLKLVKDLEIQRDTKNRGQVHLELLYCPF 383

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843340|ref|XP_002889551.1| plant synaptotagmin [Arabidopsis lyrata subsp. lyrata] gi|297335393|gb|EFH65810.1| plant synaptotagmin [Arabidopsis lyrata subsp. lyrata]

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 311/391 (79%), Positives = 356/391 (91%), Gaps = 2/391 (0%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           MGF  G+V+GLVVG+ II+GFV+ EN+RSKLRSELA T+AAFARMTVEDS+K+LP EFYP
Sbjct: 1   MGFIVGVVIGLVVGVAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKLTWLNHHL K+WPYV+EAASELIK+SVEPVLEQYRP I++SL FSK TLG
Sbjct: 61  SWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAIVASLTFSKLTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVSII+   +GVTMEL+MQWD N +I+L +KT +GV+LP+QVKNIGFTGVFRL
Sbjct: 121 TVAPQFTGVSIIDGDKNGVTMELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IFRPLV++FP F AVS SLREKKKLDF LKVVGGDIS IPGLS++IE TI DA+EDSITW
Sbjct: 181 IFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSITW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK++PI+PGDYS+LELKPVG LEVKLVQAK LTNKDL+GKSDP+A +F+RPL EKTK+
Sbjct: 241 PVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKR 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SKTINNDLNPIWNEHFEF+VED STQHLVVRIYDDEGIQ+SELIGCAQ+RLCELEPGKVK
Sbjct: 301 SKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGIQASELIGCAQIRLCELEPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVRIK--YPPY 389
           DVWLKLVKDL++QRDTK RG+V ++  Y PY
Sbjct: 361 DVWLKLVKDLEIQRDTKNRGEVHLELLYVPY 391

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
TAIR|locus:2201036	560	NTMC2T2.1 "AT1G05500" [Arabido	0.935	0.651	0.760	3.2e-152
TAIR|locus:2184931	569	SYTD "AT5G11100" [Arabidopsis	0.930	0.637	0.723	1.3e-141
TAIR|locus:2100992	510	NTMC2T4 [Arabidopsis thaliana	0.902	0.690	0.401	1.9e-67
TAIR|locus:2146688	540	SYTC "AT5G04220" [Arabidopsis	0.887	0.640	0.320	1.8e-48
TAIR|locus:2198581	537	SYTB "AT1G20080" [Arabidopsis	0.841	0.610	0.327	3.8e-46
WB|WBGene00020443	713	esyt-2 [Caenorhabditis elegans	0.746	0.408	0.290	3e-34
MGI|MGI:1098699	891	Esyt3 "extended synaptotagmin-	0.8	0.350	0.286	5.9e-28
UNIPROTKB|Q9BSJ8	1104	ESYT1 "Extended synaptotagmin-	0.764	0.269	0.287	3e-27
RGD|3053	1088	Esyt1 "extended synaptotagmin-	0.733	0.262	0.293	4.8e-27
MGI|MGI:1344426	1092	Esyt1 "extended synaptotagmin-	0.733	0.261	0.293	1e-26

TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)]

 Score = 1485 (527.8 bits), Expect = 3.2e-152, P = 3.2e-152
 Identities = 279/367 (76%), Positives = 321/367 (87%)

Query:    25 ENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPY 84
             EN+RSKLRSELA T+AAFARMTVEDS+K+LP EFYPSWVVFS RQKLTWLNHHL K+WPY
Sbjct:    25 ENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYPSWVVFSERQKLTWLNHHLTKIWPY 84

Query:    85 VNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELE 144
             V+EAASELIK+SVEPVLEQYRP I++SL FSK TLGTVAPQFTGVS+I+   +G+T+EL+
Sbjct:    85 VDEAASELIKASVEPVLEQYRPAIVASLTFSKLTLGTVAPQFTGVSVIDGDKNGITLELD 144

Query:   145 MQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKK 204
             MQWD N +I+L +KT +GV+LP+QVKNIGFTGVFRLIFRPLV++FP F AVS SLREKKK
Sbjct:   145 MQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRLIFRPLVEDFPCFGAVSVSLREKKK 204

Query:   205 LDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTL 264
             LDF LKVVGGDIS IPGLS++IE TI DA+EDSITWPVRK++PI+PGDYS+LELKPVG L
Sbjct:   205 LDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSITWPVRKVIPIIPGDYSDLELKPVGML 264

Query:   265 EVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES 324
             EVKLVQAK LTNKDL+GKSDP+A +F+RPL EKTK+SKTINNDLNPIWNEHFEF+VED S
Sbjct:   265 EVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKRSKTINNDLNPIWNEHFEFVVEDAS 324

Query:   325 TQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQRDTKYRGQVRI 384
             TQHLVVRIYDDEG+Q+SELIGCAQ+RLCELEPG               QRDTK RG+V +
Sbjct:   325 TQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVKDVWLKLVKDLEIQRDTKNRGEVHL 384

Query:   385 K--YPPY 389
             +  Y PY
Sbjct:   385 ELLYIPY 391

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0012505 "endomembrane system" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)]

 Score = 1385 (492.6 bits), Expect = 1.3e-141, P = 1.3e-141
 Identities = 264/365 (72%), Positives = 310/365 (84%)

Query:    23 RSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLW 82
             R  + RS  R++LA TIAAFARMTV+DS+K+LP +FYPSWVVFS RQKL WLN  LEK+W
Sbjct:    23 RYSSVRSTRRADLAKTIAAFARMTVQDSRKLLPGDFYPSWVVFSQRQKLNWLNLELEKIW 82

Query:    83 PYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED--GGSGVT 140
             PYVNEAASELIKSSVEPVLEQY P +L+SLKFSKFTLGTVAPQFTGVSI+E   G +G+T
Sbjct:    83 PYVNEAASELIKSSVEPVLEQYTPAMLASLKFSKFTLGTVAPQFTGVSILESESGPNGIT 142

Query:   141 MELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLR 200
             MELEMQWD N  I+L +KT LGV+LP++VKNIGFTGVFRLIF+PLVDEFP F A+SYSLR
Sbjct:   143 MELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTGVFRLIFKPLVDEFPCFGALSYSLR 202

Query:   201 EKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKP 260
             EKK LDF LKV+GG++++IPG+SD+IE TI DAIEDSITWPVRKI+PILPGDYS+LELKP
Sbjct:   203 EKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIEDSITWPVRKIIPILPGDYSDLELKP 262

Query:   261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
             VG L+VK+VQAK L NKD+IGKSDPYA++F+RPLP++TKK+KTI+N LNPIWNEHFEFIV
Sbjct:   263 VGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRTKKTKTISNSLNPIWNEHFEFIV 322

Query:   321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQRDTKYRG 380
             ED STQHL VR++DDEG+ SS+LIG AQV L EL PG               QRDTK RG
Sbjct:   323 EDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELVPGKVKDIWLKLVKDLEIQRDTKNRG 382

Query:   381 QVRIK 385
             QV+++
Sbjct:   383 QVQLE 387

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

TAIR|locus:2100992 NTMC2T4 [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 146/364 (40%), Positives = 221/364 (60%)

Query:    28 RSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNE 87
             RS  R   A  +     ++ +D KKI    F P W+ F   +++ WLN  L K+WPY+ E
Sbjct:    28 RSSKRVAKAVDMKLLGSLSRDDLKKICGDNF-PQWISFPAFEQVKWLNKLLSKMWPYIAE 86

Query:    88 AASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQW 147
             AA+ +I+ SVEP+LE YRP  ++SLKFSK TLG VAP+  G+ +       VTM+++++W
Sbjct:    87 AATMVIRDSVEPLLEDYRPPGITSLKFSKLTLGNVAPKIEGIRVQSFKEGQVTMDVDLRW 146

Query:   148 DANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSL--REKKKL 205
               + +I+L + T L  ++P+Q+K++    V R+IF+ L DE P  +AV  +L    K ++
Sbjct:   147 GGDPNIVLGV-TALVASIPIQLKDLQVFTVARVIFQ-LADEIPCISAVVVALLAEPKPRI 204

Query:   206 DFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPI--LPGDYSELELKPVGT 263
             D+ LK VGG ++ IPGLSD I+ T+   ++D + WP R +VPI  +P D S+LELKP G 
Sbjct:   205 DYTLKAVGGSLTAIPGLSDMIDDTVDTIVKDMLQWPHRIVVPIGGIPVDLSDLELKPQGK 264

Query:   264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
             L V +V+A  L NK+LIGKSDPYA +++RP+ +   K+K I N+LNP+W++ FE I ED+
Sbjct:   265 LIVTVVKATNLKNKELIGKSDPYATIYIRPVFKY--KTKAIENNLNPVWDQTFELIAEDK 322

Query:   324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQR--DTKYRGQ 381
              TQ L V ++D + +   E +G  ++ L  LE G                +  D K RG 
Sbjct:   323 ETQSLTVEVFDKD-VGQDERLGLVKLPLSSLEAGVTKELELNLLSSLDTLKVKDKKDRGS 381

Query:   382 VRIK 385
             + +K
Sbjct:   382 ITLK 385

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008289 "lipid binding" evidence=ISS;IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009958 "positive gravitropism" evidence=IMP

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA;IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2146688 SYTC "AT5G04220" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 114/356 (32%), Positives = 187/356 (52%)

Query:    43 ARMTVEDSKKILPAEF--YPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPV 100
             AR  VE S  +L       P W+     +++ W N  +  +WPY+++A   +I+SSV+P+
Sbjct:    41 ARPLVETSISVLLDLLPDIPLWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPL 100

Query:   101 LEQY-RPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKT 159
                Y   F + S++F   +LGT+ P   GV   E     +  E  ++W  N +I+L +K 
Sbjct:   101 FADYIGTFCIESIEFENLSLGTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKV 160

Query:   160 RLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTI 219
              L + + VQ+ ++ F  + R+  +PL+  FP F  V  SL EK  +DF LKV+GGD+ +I
Sbjct:   161 -LSLRIRVQLVDLQFFAIVRVALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSI 219

Query:   220 PGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDL 279
             PGL   ++ TI   +     WP    +PIL    + ++ KPVG L V +++A+ L  KDL
Sbjct:   220 PGLYRYVQETIKRQVSSMYHWPQVLEIPILDSSTASVK-KPVGLLHVSILRARNLLKKDL 278

Query:   280 IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339
             +G SDPY  L +       KK+     +LNP WNEHF+ IV+D ++Q L + ++D + + 
Sbjct:   279 LGTSDPYVKLSLTGEKLPAKKTTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVG 338

Query:   340 SSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQRDT---KYRG--QVRIKYPPYK 390
               + +G   + L ++ PG                 D+   K RG  +V ++Y P++
Sbjct:   339 GHDRLGMQMIPLQKINPGERKEFNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFR 394

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

TAIR|locus:2198581 SYTB "AT1G20080" [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 110/336 (32%), Positives = 178/336 (52%)

Query:    60 PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVL-EQYRPFILSSLKFSKFT 118
             P WV      ++ WLN  +  +WPY+++A  ++ KS  +P++ EQ   + + S++F   T
Sbjct:    60 PMWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLT 119

Query:   119 LGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVF 178
             LG++ P F G+ +       + MEL ++W  N +II+  K   G+   VQV ++      
Sbjct:   120 LGSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKA-FGLKATVQVIDLQVYATP 178

Query:   179 RLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSI 238
             R+  +PLV  FP FA +  SL +K ++DF LK++G D+  IPGL   ++  I D + +  
Sbjct:   179 RITLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMY 238

Query:   239 TWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT 298
              WP    V I+  D S+   KPVG L VK+++A  L  KDL+G SDPY  L +       
Sbjct:   239 LWPKTLNVQIM--DPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPG 296

Query:   299 KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGX 358
             KK+   +++LNP WNE F+ +V++  +Q L + +YD E +   + IG   ++L +L P  
Sbjct:   297 KKTVVKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEE 356

Query:   359 XXXXXXXXXXXXXXQRDT--KYRGQ--VRIKYPPYK 390
                           +     K RGQ  V ++Y P+K
Sbjct:   357 PKLMTLELLKSMEPKEPVSEKSRGQLVVEVEYKPFK 392

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009306 "protein secretion" evidence=IMP

WB|WBGene00020443 esyt-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 379 (138.5 bits), Expect = 3.0e-34, P = 3.0e-34
 Identities = 90/310 (29%), Positives = 164/310 (52%)

Query:    44 RMTVEDSKKILPAEFY--PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVL 101
             R T    ++++ A+    P+WV F   +++ WLN  + +LWPYV E     +   + P +
Sbjct:    58 RATALREREVIMAQLQDLPAWVQFPDTERVEWLNKVIHQLWPYVGEYTKTFMNDFIIPQV 117

Query:   102 EQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED--GGSGVTMELEMQWDANSSIILAIKT 159
             +   P +  + KF+K  +G +  +  G+ +     G   + +++++ +  ++   ++   
Sbjct:   118 KAQMPGMFKNFKFTKMDMGDIPCRVGGIKVYTTNVGRDRIIVDMDVAYAGDADFTVSCCG 177

Query:   160 RLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTI 219
               G      + NI F+G  R I +PL+   P    VS +  E  K+DF L  +G ++  +
Sbjct:   178 FTG-----GMNNIQFSGKLRAILKPLLPYPPMVGGVSGTFLEMPKMDFNLTGMG-EMVEL 231

Query:   220 PGLSDSIEATIHDAIEDSITWPVRKIVPILPG-DYSELEL-KPVGTLEVKLVQAKGLTNK 277
             PGL D+I + I+  I      P   +VP+ P  D ++L   +P G + +K+++AK L N+
Sbjct:   232 PGLIDAIRSVINSQIAALCVLPNEIVVPLAPDVDVTQLYFPEPDGVVRLKIIEAKNLENR 291

Query:   278 DLI----GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY 333
             D+     GKSDPYA + V     +  K++TI++DLNPIWNE+FE +V+    Q L + ++
Sbjct:   292 DISFIKKGKSDPYAEIQVG---SQFFKTRTIDDDLNPIWNEYFEAVVDQADGQKLRIELF 348

Query:   334 DDEGIQSSEL 343
             D++  +  EL
Sbjct:   349 DEDQGKDEEL 358

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

MGI|MGI:1098699 Esyt3 "extended synaptotagmin-like protein 3" [Mus musculus (taxid:10090)]

 Score = 323 (118.8 bits), Expect = 5.9e-28, P = 5.9e-28
 Identities = 96/335 (28%), Positives = 167/335 (49%)

Query:    28 RSKLRSELATTIAAFARMTVEDS--KKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYV 85
             R   R +L    AAF  +  E     + L  +  P+W+ F   +++ W N  + ++WPY+
Sbjct:    77 RRNRRGKLGRLEAAFEFLEHEREFISRELRGQHLPAWIHFPDVERVEWANKIIIQIWPYL 136

Query:    86 NEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSG--VTMEL 143
             +      I+  +EP + + +   L +  F+K   G   P+  GV +  D  +   VT++L
Sbjct:   137 SMIMENKIREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPKVNGVKVHTDKRNRRKVTLDL 195

Query:   144 EMQWDANSSIILAI-KTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREK 202
             ++ +  +  I + + K R GV+  VQ++     G  R+I  PL+ + P   AV+    +K
Sbjct:   196 QICYIGDCEISVELQKIRGGVS-GVQLQ-----GTLRVILEPLLVDKPFIGAVTVFFLQK 249

Query:   203 KKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPG-DYSELELK-P 260
               L      +  ++  +PG+++  ++ + D I   +  P R  VP+  G D + L +  P
Sbjct:   250 PHLQINWTGLT-NLLDMPGINELSDSLLEDLIAAHLVLPNRVTVPVKKGLDVTNLRVPLP 308

Query:   261 VGTLEVKLVQAKGLTNKD----LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 316
              G + V L++AK L  KD    L GKSDPYA + +     +  +S+TI  +LNP WNE F
Sbjct:   309 CGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIGL---QHCRSRTIYKNLNPTWNEVF 365

Query:   317 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRL 351
             EF+V +   Q L V +YD++     + +G  Q+ L
Sbjct:   366 EFMVYEVPGQDLEVDLYDED-TDKDDFLGSLQICL 399

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9BSJ8 ESYT1 "Extended synaptotagmin-1" [Homo sapiens (taxid:9606)]

 Score = 318 (117.0 bits), Expect = 3.0e-27, P = 3.0e-27
 Identities = 93/323 (28%), Positives = 161/323 (49%)

Query:    30 KLRSELATTIAAFARMTVEDSKKILPAEFY------PSWVVFSHRQKLTWLNHHLEKLWP 83
             ++R E   ++ A AR  ++D +++     Y      P+WV F   +K  WLN  + ++WP
Sbjct:    93 RVRDEKERSLRA-ARQLLDDEEQLTAKTLYMSHRELPAWVSFPDVEKAEWLNKIVAQVWP 151

Query:    84 YVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIE-DGGSGVTME 142
             ++ +   +L+  +V P +    P  L +  F++  LG    +  GV +        + ++
Sbjct:   152 FLGQYMEKLLAETVAPAVRGSNPH-LQTFTFTRVELGEKPLRIIGVKVHPGQRKEQILLD 210

Query:   143 LEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREK 202
             L + +  +  I + +K     A    VK +   GV R+I  PL+ + P   AVS     +
Sbjct:   211 LNISYVGDVQIDVEVKKYFCKA---GVKGMQLHGVLRVILEPLIGDLPFVGAVSMFFIRR 267

Query:   203 KKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPG--DYSELELK- 259
               LD     +  ++  IPGLS   +  I D+I   +  P R +VP++P   D ++L    
Sbjct:   268 PTLDINWTGMT-NLLDIPGLSSLSDTMIMDSIAAFLVLPNRLLVPLVPDLQDVAQLRSPL 326

Query:   260 PVGTLEVKLVQAKGLTNKD-----LI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 313
             P G + + L+ A+GL++KD     LI GKSDPYA+  VR L  +T  S+ I+ +LNP W 
Sbjct:   327 PRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYAL--VR-LGTQTFCSRVIDEELNPQWG 383

Query:   314 EHFEFIVEDESTQHLVVRIYDDE 336
             E +E +V +   Q + V ++D +
Sbjct:   384 ETYEVMVHEVPGQEIEVEVFDKD 406

GO:0016021 "integral to membrane" evidence=IEA

RGD|3053 Esyt1 "extended synaptotagmin-like protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 316 (116.3 bits), Expect = 4.8e-27, P = 4.8e-27
 Identities = 91/310 (29%), Positives = 155/310 (50%)

Query:    43 ARMTVEDSKKILPAEFY------PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSS 96
             AR  ++D ++I     Y      P+WV F   +K  WLN  + ++WP++ +   +L+  +
Sbjct:    97 ARQLLDDEERITAETLYMSHRELPAWVSFPDVEKAEWLNKIVVQVWPFLGQYMEKLLAET 156

Query:    97 VEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSG-VTMELEMQWDANSSIIL 155
             V P +    P  L +  F++  LG    +  GV +        + ++L + +  +  I +
Sbjct:   157 VAPAVRGANPH-LQTFTFTRVELGEKPVRIIGVKVHPSQRKDQILLDLNVSYVGDLQIDV 215

Query:   156 AIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGD 215
              +K     A    VK +   GV R+I  PL+ + P   AVS    ++  LD     +  +
Sbjct:   216 EVKKYFCKA---GVKGMQLHGVLRVILEPLIGDLPIVGAVSMFFIKRPTLDINWTGMT-N 271

Query:   216 ISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPG--DYSELELK-PVGTLEVKLVQAK 272
             +  IPGLS   +  I D+I   +  P R +VP++P   D ++L    P G + + L+ A+
Sbjct:   272 LLDIPGLSSLSDTMIMDSIAAFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAAR 331

Query:   273 GLTNKD-----LI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQ 326
             GL++KD     LI GKSDPYA+  VR +  +T  S+ I+ +LNP W E +E IV +   Q
Sbjct:   332 GLSSKDKYVKGLIEGKSDPYAL--VR-VGTQTFCSRVIDEELNPHWGETYEVIVHEVPGQ 388

Query:   327 HLVVRIYDDE 336
              + V ++D +
Sbjct:   389 EIEVEVFDKD 398

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1344426 Esyt1 "extended synaptotagmin-like protein 1" [Mus musculus (taxid:10090)]

 Score = 313 (115.2 bits), Expect = 1.0e-26, P = 1.0e-26
 Identities = 91/310 (29%), Positives = 154/310 (49%)

Query:    43 ARMTVEDSKKILPAEFY------PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSS 96
             AR  ++D ++I     Y      P+WV F   +K  WLN  + ++WP++ +   +L+  +
Sbjct:    95 ARQLLDDEERITAETLYMSHRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAET 154

Query:    97 VEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSG-VTMELEMQWDANSSIIL 155
             V P +    P  L +  F++  LG    +  GV +        + ++L + +  +  I +
Sbjct:   155 VAPAVRGANPH-LQTFTFTRVELGEKPLRIIGVKVHPSQRKDQILLDLNVSYVGDVQIDV 213

Query:   156 AIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGD 215
              +K     A    VK +   GV R+I  PL  + P   AVS    ++  LD     +  +
Sbjct:   214 EVKKYFCKA---GVKGMQLHGVLRVILEPLTGDLPIVGAVSMFFIKRPTLDINWTGMT-N 269

Query:   216 ISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPG--DYSELELK-PVGTLEVKLVQAK 272
             +  IPGLS   +  I D+I   +  P R +VP++P   D ++L    P G + + L+ A+
Sbjct:   270 LLDIPGLSSLSDTMIMDSIAAFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAAR 329

Query:   273 GLTNKD-----LI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQ 326
             GL++KD     LI GKSDPYA+  VR +  +T  S+ I+ +LNP W E +E IV +   Q
Sbjct:   330 GLSSKDKYVKGLIEGKSDPYAL--VR-VGTQTFCSRVIDEELNPHWGETYEVIVHEVPGQ 386

Query:   327 HLVVRIYDDE 336
              + V ++D +
Sbjct:   387 EIEVEVFDKD 396

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L706	SYT5_ARATH	No assigned EC number	0.7826	0.9974	0.6946	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	390
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-33
smart00239	101	smart00239, C2, Protein kinase C conserved region	7e-28
cd00030	102	cd00030, C2, C2 domain	5e-27
pfam00168	85	pfam00168, C2, C2 domain	8e-26
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	4e-20
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	4e-16
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	1e-15
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	2e-15
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	6e-15
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	9e-15
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	3e-14
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	4e-14
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	9e-13
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	3e-12
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	6e-12
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	2e-11
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	2e-11
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	3e-11
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	3e-11
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	7e-11
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	8e-11
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	1e-10
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-10
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	3e-10
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	3e-10
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	3e-10
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	6e-10
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	1e-09
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	2e-09
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	2e-09
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	3e-09
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	3e-09
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	7e-09
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	9e-09
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	1e-08
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	2e-08
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	2e-08
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	2e-08
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	4e-08
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	5e-08
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	6e-08
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	9e-08
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	1e-07
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	2e-07
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	3e-07
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	7e-07
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	8e-07
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	2e-06
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	3e-06
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	3e-06
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	4e-06
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	6e-06
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	1e-05
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	1e-05
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	2e-05
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	3e-05
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	5e-05
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	5e-05
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	2e-04
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	3e-04
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	3e-04
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	5e-04
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	5e-04
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	5e-04
cd08389	124	cd08389, C2A_Synaptotagmin-14_16, C2A domain first	6e-04
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	0.001
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	0.002
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	0.003

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score =  131 bits (331), Expect = 3e-33
 Identities = 86/319 (26%), Positives = 137/319 (42%), Gaps = 47/319 (14%)

Query: 71  LTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVS 130
           + WLN  L+K WP +  + S+ +   V   L +  P  + +L   +FTLG+  P+  G+ 
Sbjct: 223 VEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIR 282

Query: 131 IIEDGGSGVTMELEMQWDA-------------------NSSIILAIK--TRLGVA-LPVQ 168
                 S     + M  D                    N  I L +K     G   LP+ 
Sbjct: 283 SYPSTESDT---VVMDVDFSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPIL 339

Query: 169 VKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGG-----DISTIPGLS 223
           V+++ F G  R+    L+ ++P    VS+ L E  + DF L  +GG     DI  IPGLS
Sbjct: 340 VEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFGVDIFAIPGLS 398

Query: 224 DSIEATIHDAIEDSITWPVRKIVPI-LPGDYSELELKPVGTLEVKLVQAKGLTNKDLI-- 280
             I+  I+  +   +  P    + I +    +      +G +EVK+  A+GL   D    
Sbjct: 399 RFIQEIINSTLGPMLLPP--NSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTIN 456

Query: 281 GKSDPYAVL----FVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDE 336
           G  DPY  +     V        K++   N LNP+WNE F +I+ +  T  L + +YD  
Sbjct: 457 GTVDPYITVTFSDRVIG------KTRVKKNTLNPVWNETF-YILLNSFTDPLNLSLYDFN 509

Query: 337 GIQSSELIGCAQVRLCELE 355
             +S +++G  Q+ L  L 
Sbjct: 510 SFKSDKVVGSTQLDLALLH 528

Length = 1227

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score =  105 bits (263), Expect = 7e-28
 Identities = 37/101 (36%), Positives = 54/101 (53%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
           TL VK++ A+ L  KD  GKSDPY  + +   P++ KK+K + N LNP+WNE FEF V  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 323 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVW 363
                L + +YD +     + IG   + L +L  G   +  
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score =  102 bits (257), Expect = 5e-27
 Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 3/104 (2%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V +++A+ L  KDL GKSDPY  + +    ++  K+K + N LNP+WNE FEF V D 
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSL--GGKQKFKTKVVKNTLNPVWNETFEFPVLDP 58

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELE-PGKVKDVWLKL 366
            +  L V ++D +     + +G  ++ L EL   GK  ++WL L
Sbjct: 59  ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 99.3 bits (248), Expect = 8e-26
 Identities = 33/85 (38%), Positives = 45/85 (52%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V ++ AK L  KDL GKSDPY  + +    + TKK+K + N LNP+WNE F F V   
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQ 348
               L + +YD +     + IG   
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 84.7 bits (210), Expect = 4e-20
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 10/111 (9%)

Query: 262 GTLEVKLVQAKGLTNKDLI------GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEH 315
           G L + +++A+ L  KD        GKSDPY ++ V     +T KSK I  +LNP WNE 
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA---QTFKSKVIKENLNPKWNEV 57

Query: 316 FEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
           +E +V++   Q L + ++D++  +   L G   + L  +E     D WL L
Sbjct: 58  YEAVVDEVPGQELEIELFDEDPDKDDFL-GRLSIDLGSVEKKGFIDEWLPL 107

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 73.4 bits (181), Expect = 4e-16
 Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 2/106 (1%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V ++ A+ L + D  GKSDP+   ++    EK  K+KTI   LNP+WNE FE  V   
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNG--EKVFKTKTIKKTLNPVWNESFEVPVPSR 58

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 369
               L V +YD +     +L+G A + L +LEP +  ++ L L   
Sbjct: 59  VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQ 104

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 7/107 (6%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT-KKSKTINNDLNPIWNEHFEFIVE 321
            L++ L + + L  +D  G SDPY V F      KT  KSKTI  +LNP+W+E F   +E
Sbjct: 1   QLDIHLKEGRNLAARDRGGTSDPY-VKF--KYGGKTVYKSKTIYKNLNPVWDEKFTLPIE 57

Query: 322 DESTQHLVVRIYD-DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367
           D  TQ L ++++D D G+   + +G A V L  LE  K  +V LKL 
Sbjct: 58  D-VTQPLYIKVFDYDRGLT-DDFMGSAFVDLSTLELNKPTEVKLKLE 102

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 1/103 (0%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V++++A  +T  DL+   D Y  L++    ++ K++KTI N +NP+WNE FEF ++ +
Sbjct: 2   LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ 61

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
               L + + D++ +    L G     + +L+ G+   V   L
Sbjct: 62  VKNVLELTVMDEDYVMDDHL-GTVLFDVSKLKLGEKVRVTFSL 103

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 70.4 bits (173), Expect = 6e-15
 Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
           GTLEV L+ AKGL + D +GK DPY ++  R    K+K +K   +  NP WNE F+F VE
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAK--GDGRNPEWNEKFKFTVE 58

Query: 322 D---ESTQHLVVRIYDDEGIQSSELIGCAQVRL 351
                    L++RI D +     + IG A + L
Sbjct: 59  YPGWGGDTKLILRIMDKDNFSDDDFIGEATIHL 91

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 70.1 bits (172), Expect = 9e-15
 Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 8/110 (7%)

Query: 262 GTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
           G L V +V+AK L  KD    GKSDPYA+L V     +  K++TI N LNP WN   EF 
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV---GAQRFKTQTIPNTLNPKWNYWCEFP 57

Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKL 366
           +     Q L + ++D +     + +G   + L E+         D W+ L
Sbjct: 58  IFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITL 107

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 68.5 bits (168), Expect = 3e-14
 Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 7/116 (6%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
           G L+VK+++A GL   D+ GKSDP+ VL +     +T    TI   LNP WN+ F F ++
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQT---HTIYKTLNPEWNKIFTFPIK 57

Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTK 377
           D     L V +YD++  +  E +G   + L  ++ G+ K  W  L KD  ++   K
Sbjct: 58  D-IHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERK--WYAL-KDKKLRTRAK 109

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 68.9 bits (169), Expect = 4e-14
 Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 31/136 (22%)

Query: 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP----------------------- 293
              P+  L+V +++AKGL  KD+ G SDPY +L + P                       
Sbjct: 23  AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLK 82

Query: 294 --LPEK-TKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVR 350
             +P K  K ++     LNP+WNE F F VED S   L + I+D +     + +GC  + 
Sbjct: 83  DTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIP 138

Query: 351 LCELEPGKVKDVWLKL 366
           L +L    + D W KL
Sbjct: 139 LKDLPSCGL-DSWFKL 153

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 64.5 bits (158), Expect = 9e-13
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
             L V +++A+ L   D  G SDPY  + +    +K KK KT      LNP++NE F F 
Sbjct: 14  ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD 73

Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIGC 346
           V  E  +   LV+ + D + +  +E+IG 
Sbjct: 74  VPAEQLEEVSLVITVVDKDSVGRNEVIGQ 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 6/111 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEFI 319
             L V ++QA  L   D+ G SDPY  +++  LP+K KK  +K     LNP++NE F F 
Sbjct: 16  NQLTVGIIQAADLPAMDMGGTSDPYVKVYL--LPDKKKKFETKVHRKTLNPVFNETFTFK 73

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
           V   +   + LV  +YD +     +LIG  +V L  ++ G V + W  L  
Sbjct: 74  VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLES 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 61.8 bits (151), Expect = 6e-12
 Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 12/132 (9%)

Query: 261 VGTLEVKLVQAKGLTNKDLIGKS-DPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
           +G L V +  A+GL   D+IG + DPY    +     +  ++K   +  NP+WNE    +
Sbjct: 1   IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSIS-NRRELARTKVKKDTSNPVWNETKYIL 59

Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTKY 378
           V    T+ L + +YD    +  +LIG A+  L  L +  + +++        ++ R+ K 
Sbjct: 60  VNSL-TEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENL------TKNLLRNGKP 112

Query: 379 RGQVR--IKYPP 388
            G++   +++ P
Sbjct: 113 VGELNYDLRFFP 124

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI--NNDLNPIWNEHFEFI 319
           G L V +++AK L   D+ G SDPY  + +    ++ KK KT      LNP +NE F F 
Sbjct: 15  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74

Query: 320 VEDESTQ--HLVVRIYDDEGIQSSELIG 345
           V  E  Q  HL+V + D + I  ++ IG
Sbjct: 75  VPFEQIQKVHLIVTVLDYDRIGKNDPIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 266 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDEST 325
           + LV+ K L   D  G SDPY V F   L  +  KSK  +  LNP W E F+  + D+ +
Sbjct: 4   IVLVEGKNLPPMDDNGLSDPY-VKF--RLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQS 60

Query: 326 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
           Q L + ++D +  +  E IG  ++ L  L   +   + L+L
Sbjct: 61  QILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELEL 101

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 13/126 (10%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI-NNDLNPIWNEHFEFIV 320
           GTL V +++A+ L NK  + K DPY VL +      TKK+KT      +P W+E   F +
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEI 57

Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCE-LEPGKVKDVWLKLVKDLDVQRDTKYR 379
            ++    L V ++DD+  +  +LIG  +V L   L+ G+  D W       ++    +Y 
Sbjct: 58  TEDKKPILKVAVFDDDK-RKPDLIGDTEVDLSPALKEGEFDD-W------YELTLKGRYA 109

Query: 380 GQVRIK 385
           G+V ++
Sbjct: 110 GEVYLE 115

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 25/130 (19%)

Query: 269 VQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF-----IVEDE 323
           V  K L    L GK D  A +  R      KK++ + N+LNP+WNE FE+        DE
Sbjct: 3   VSLKNLPG--LKGKGDRIAKVTFR---GVKKKTRVLENELNPVWNETFEWPLAGSPDPDE 57

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRG--- 380
           S   L + + D E +  + LIG A V L +L    + +V   L+       D+  R    
Sbjct: 58  S---LEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLL-------DSNGRPTGA 107

Query: 381 --QVRIKYPP 388
              + + Y P
Sbjct: 108 TISLEVSYQP 117

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 59.2 bits (144), Expect = 7e-11
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%)

Query: 266 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDEST 325
           +++V+A+ L      G SDPY  L       +  K++TI + LNP W+E FE  V     
Sbjct: 5   IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64

Query: 326 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD------VWLKLVKDLDVQ 373
             +   ++D   +   +L G A ++   L+P +  D      +WL    DLD Q
Sbjct: 65  LWISATVWDRSFVGKHDLCGRASLK---LDPKRFGDDGLPREIWL----DLDTQ 111

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 59.1 bits (143), Expect = 8e-11
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPY--AVLFVRPLPEKTKKSKTINNDLNPIWNEH 315
           L   G L + +++A+ L   D+ G SDPY    L       K KK+    N LNP +NE 
Sbjct: 10  LPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEA 69

Query: 316 FEFIVEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367
             F V  E+  +  L++ + D + +  +ELIG  +V       G+ ++ W +++
Sbjct: 70  LVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVG--PNADGQGREHWNEML 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 318
           K +G L VKL+QA+ L  +D  G +DPY  + + P    TK+SK     LNP ++E F F
Sbjct: 13  KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVF 72

Query: 319 IV--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
            V  ++   + L V +YD +     E IG  ++ L E++  +  D+W K+
Sbjct: 73  EVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 258  LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFE 317
            ++  G L + L   + L + D  G SDP+  LF+    +   K+K +   LNP+WNE F 
Sbjct: 1036 VENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNE--KSVYKTKVVKKTLNPVWNEEFT 1093

Query: 318  FIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK 358
              V +     L + + D +  + ++L+G A++ L +LEPG 
Sbjct: 1094 IEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGG 1134

Length = 1227

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 7/79 (8%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK-SKTINNDLNPIWNEHFEFIVED 322
           + + +V A+GL  KD  G SDPY  + V     KTKK +KTI  +LNP+WNE F F   +
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQV----GKTKKRTKTIPQNLNPVWNEKFHFECHN 58

Query: 323 ESTQHLVVRIYD-DEGIQS 340
            S+  + VR++D D+ I+S
Sbjct: 59  -SSDRIKVRVWDEDDDIKS 76

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINND--LNPIWNEHFEFIV 320
           TLE+ ++ A+ L N +L GK   YAV+++ P     K+S  ++ D   NP WNE   F +
Sbjct: 1   TLEITIISAEDLKNVNLFGKMKVYAVVWIDP---SHKQSTPVDRDGGTNPTWNETLRFPL 57

Query: 321 EDESTQH----LVVRIYDDEGIQSSELIGCAQVRLCEL 354
           ++   Q     L + +Y +      +LIG  +V L +L
Sbjct: 58  DERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDL 95

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 56.8 bits (138), Expect = 3e-10
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK-KSKTINNDLNPIWNEHFEFIV 320
           G L + + +A  L N + +GK DPY  + V       K ++ TI+N LNP+W+E     V
Sbjct: 1   GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN---GIVKGRTVTISNTLNPVWDEVLYVPV 57

Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
                Q + + + D E +     +G  ++ + +L
Sbjct: 58  TSP-NQKITLEVMDYEKVGKDRSLGSVEINVSDL 90

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 56.1 bits (136), Expect = 6e-10
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 10/106 (9%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEF-- 318
            L   +++AKGL   D  G SDPY  L + P   K  K  +KT++   NP +NE   +  
Sbjct: 16  ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYG 75

Query: 319 IVEDE---STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD 361
           I E++    T  L+V   D++    ++ +G  ++ L +L+P + K 
Sbjct: 76  ITEEDIQRKTLRLLV--LDEDRF-GNDFLGETRIPLKKLKPNQTKQ 118

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V++V A+ L  KD  G S  Y  L       + K+++T   DLNP+WNE   F V D 
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVEL---DFDGQKKRTRTKPKDLNPVWNEKLVFNVSDP 58

Query: 324 S---TQHLVVRIYDDE 336
           S      L V +Y+D 
Sbjct: 59  SRLSNLVLEVYVYNDR 74

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE------KTKKSKTINNDLNPIWNEHFE 317
           L V+++ A+ L   D  G SDP+    V  LP        T K++     L P+++E FE
Sbjct: 18  LRVEILNARNLLPLDSNGSSDPFVK--VELLPRHLFPDVPTPKTQVKKKTLFPLFDESFE 75

Query: 318 FIVEDESTQH----LVVRIYDDEGIQSSELIGCAQVRL 351
           F V  E        L+  + D + + S++  G A + L
Sbjct: 76  FNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPL 113

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 8/96 (8%)

Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
           +G L+V++V+   L  +D    SDPY VL    L  +  K++ I  +LNP+WNE     V
Sbjct: 1   LGLLKVRVVRGTNLAVRDFTS-SDPYVVL---TLGNQKVKTRVIKKNLNPVWNEELTLSV 56

Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP 356
            +     L + ++D +     + +G A++   +LEP
Sbjct: 57  PNPMAP-LKLEVFDKDTFSKDDSMGEAEI---DLEP 88

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 53.7 bits (130), Expect = 3e-09
 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V L  AK L       +  PY  L V    + T+KSK      NP+W E F F+V + 
Sbjct: 2   LFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFLVRNP 58

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLKL 366
             Q L + + DD+  +S   +G   + L EL  EP    D    L
Sbjct: 59  ENQELEIEVKDDKTGKS---LGSLTLPLSELLKEPDLTLDQPFPL 100

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 269 VQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKT--INNDLNPIWNEHFEFIVEDES 324
           +  + L +KD++ KSDP+ V++V+        +  +T  I N+LNP +   F      E 
Sbjct: 7   ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66

Query: 325 TQHLVVRIYDDEG----IQSSELIGCAQVRLCEL 354
            Q L   +YD +     +   + +G A+  L E+
Sbjct: 67  VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 53.3 bits (129), Expect = 7e-09
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 266 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK---KSKTINNDLNPIWNEHFEFIVED 322
           V +V+A+ L  KD  GKSDPY  + +     K K   +   I N LNP++ + FE     
Sbjct: 4   VYVVRARNLQPKDPNGKSDPYLKIKLG----KKKINDRDNYIPNTLNPVFGKMFELEATL 59

Query: 323 ESTQHLVVRIYDDEGIQSSELIG 345
                L + + D + + S +LIG
Sbjct: 60  PGNSILKISVMDYDLLGSDDLIG 82

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 53.0 bits (128), Expect = 9e-09
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 6/109 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
             L V++ +AK L   D  G SDPY  L + P P+    +K+KTI   LNP+WNE F F 
Sbjct: 13  NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD 72

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
           +   D+  + L + ++D +    ++ +G     + EL      D W KL
Sbjct: 73  LKPADKDRR-LSIEVWDWDRTTRNDFMGSLSFGVSELIK-MPVDGWYKL 119

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
           TL +K+++A  L  KD  G SDP+  +++ P  +   ++K    +LNP WNE F F  E 
Sbjct: 17  TLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF--EG 74

Query: 323 ESTQHLVVRI-----YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
              + L  R+      D +    ++ IG   + L +++  + +  W  L
Sbjct: 75  FPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 263 TLEVKLVQAKGLTNKDLIGKS--DPYAVLFVRPLP---EKTKKSKTI-NNDLNPIWNEHF 316
           TL +K++  + L        S  DPY  + +  LP       K+K + NN  NP+WNE F
Sbjct: 3   TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETF 62

Query: 317 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           EF V       L   +YD++     + +G A + L  L  G
Sbjct: 63  EFDVTVPELAFLRFVVYDEDSG-DDDFLGQACLPLDSLRQG 102

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVL---------FVRPLPEKTKKSKTINNDLNPIWNE 314
           L VK++    L  KD+ G SDPY  +          +  +  KT K KT    LNP WNE
Sbjct: 2   LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIK-KT----LNPKWNE 56

Query: 315 HFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
            F F V +     L+  ++D+  +   + +G  +V L  L   
Sbjct: 57  EFFFRV-NPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTE 98

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           + + ++ A GL  +DL    DP+AV+ V     +T  +      L+P WNEHF+  V   
Sbjct: 2   VRLTVLCADGLAKRDLFRLPDPFAVITVDG--GQTHSTDVAKKTLDPKWNEHFDLTVGPS 59

Query: 324 STQHLVVRIYDDEGIQ--SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ 381
           S   + ++++D +  +      +GC ++R   + P K        ++ L    +   RG+
Sbjct: 60  SI--ITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGK 117

Query: 382 VRIK 385
           + + 
Sbjct: 118 IVVS 121

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI--NNDLNPIWNEHFEFI 319
             + V +++A+ L   D+ G SDPY  +++    ++ +K KT+     LNP++NE F F 
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74

Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIG 345
           +  E  +   L++ + D + +  ++LIG
Sbjct: 75  IPLERLRETTLIITVMDKDRLSRNDLIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 3/109 (2%)

Query: 263 TLEVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF-IV 320
            L V L++A+ L  +       DP+  + + P   ++ +SK      NP ++E F F + 
Sbjct: 15  QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVS 74

Query: 321 EDESTQH-LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
             E  +  L + +YD +      +IG     L +L+  K   VW  L  
Sbjct: 75  FKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 50.3 bits (121), Expect = 6e-08
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 10/99 (10%)

Query: 271 AKGLTNKDLIGKSDPYAVLFVRPLPEKTK----KSKTINNDLNPIWNEHFEFIVED---- 322
            K L  KD  GKSDP+  +  R   + T     +++ I N LNP+W   F   ++     
Sbjct: 9   GKKLDKKDFFGKSDPFLEIS-RQSEDGTWVLVYRTEVIKNTLNPVWKP-FTIPLQKLCNG 66

Query: 323 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD 361
           +  + + + +YD +     +LIG  +  L EL      +
Sbjct: 67  DYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKSSPLE 105

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 50.3 bits (120), Expect = 9e-08
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLP-EKTKKSKTINNDLNPIWNEH 315
           L   G L V +++AK L   D+   SDP+  +  V  L   KTKK+  +   ++P +NE 
Sbjct: 10  LPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNES 69

Query: 316 FEFIVEDESTQH--LVVRIYDDEGIQSSELIG 345
           F F V  E  ++  LV  +Y      S++ IG
Sbjct: 70  FSFKVPQEELENVSLVFTVYGHNVKSSNDFIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKS-DPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHF-- 316
           GTL V ++ AK L   D  G   DPY   ++ P P+KT K KT  +    NP +NE    
Sbjct: 13  GTLFVMVMHAKNLPLLD--GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVY 70

Query: 317 -EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
               VED   + L V ++  + +  +E +G   + L +L+  +  + W  L
Sbjct: 71  DGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 14/114 (12%)

Query: 253 YSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT----KKSKTINNDL 308
           YS    K    L V + + + L   D     DPY  L++  LP+K+    +K+    ++L
Sbjct: 11  YSSQRQK----LIVTVHKCRNLPPCDSSDIPDPYVRLYL--LPDKSKSTRRKTSVKKDNL 64

Query: 309 NPIWNEHFEFIV--EDESTQHLVVRIYDDEGIQSSE--LIGCAQVRLCELEPGK 358
           NP+++E FEF V  E+   + L V + + +   S E  L+G   + L +L+  K
Sbjct: 65  NPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK 118

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI--NNDLNPIWNEHFEFI 319
             L V +++   L   D  G SDP+  L+++P   K  K KT      LNP +NE F + 
Sbjct: 13  RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD 72

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIG 345
           +   D + + L + ++D +  +S++ IG
Sbjct: 73  IKHSDLAKKTLEITVWDKDIGKSNDYIG 100

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L++ +  AK L +     K DPY  + V   P   KK++      NP WNEHF  +V  +
Sbjct: 4   LQITVESAK-LKSNSKSFKPDPYVEVTVDGQP--PKKTEVSKKTSNPKWNEHFTVLVTPQ 60

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKL 366
           ST     +++    +++  L+G A + L ++     GK+++V L L
Sbjct: 61  STLEF--KVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTL 104

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 47.2 bits (113), Expect = 8e-07
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 6/61 (9%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSK----TINNDLNPIWNEHFE 317
             L V ++QA+ L  +D     +PY  +++  LP++++KSK    T+   LNP WN+ FE
Sbjct: 16  SQLIVTVLQARDLPPRDDGSLRNPYVKVYL--LPDRSEKSKRRTKTVKKTLNPEWNQTFE 73

Query: 318 F 318
           +
Sbjct: 74  Y 74

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 22/126 (17%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLPEKTKKSKTINNDLNPIWNEH--FEFIV 320
           L   + QA+ L   D  G SDP+A V F+     ++++++ I   L+P W++   F+ + 
Sbjct: 3   LRAYIYQARDLLAADKSGLSDPFARVSFL----NQSQETEVIKETLSPTWDQTLIFDEVE 58

Query: 321 EDESTQHL-------VVRIYDDEGIQSSELIGCAQVR------LCELEPGKVKDVWLKLV 367
              S + +       VV ++D + +   E +G +  +      L E  P K++  W  + 
Sbjct: 59  LYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQ--WFPIY 116

Query: 368 KDLDVQ 373
           K     
Sbjct: 117 KGGQSA 122

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVR-PLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
           L V++++ + L  K   G  DP+A + +       TK++K      NP ++E F F +  
Sbjct: 1   LSVRVLECRDLALKS-NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59

Query: 323 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
             +        ++E ++ SEL    +V L         D +L  V+
Sbjct: 60  GFSYEKKSFKVEEEDLEKSEL----RVELWHASMV-SGDDFLGEVR 100

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 272 KGL-TNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVV 330
           KGL T++   G   PYA L++    +    ++      NP WN   EF+V D     + V
Sbjct: 1   KGLDTSESKTGLLSPYAELYLNG--KLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTV 58

Query: 331 RIYDDEGIQSSELIGCAQVRLCEL 354
            + DD   +   ++G   + L +L
Sbjct: 59  VVKDD-RDRHDPVLGSVSISLNDL 81

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
           +G L V +V+ + L   +  GKSDPY  +    +  +  K+K +++ LNP WN   +F V
Sbjct: 14  IGRLMVVIVEGRDLKPCNSNGKSDPYCEV---SMGSQEHKTKVVSDTLNPKWNSSMQFFV 70

Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
           +D     L + ++D +     + +G  ++R+ ++
Sbjct: 71  KDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADI 104

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
            L   +++A+ L  KD  G SDP+  +F      +T ++  +     P WNE FEF + +
Sbjct: 1   RLRCHVLEARDLAPKDRNGTSDPFVRVFYN---GQTLETSVVKKSCYPRWNEVFEFELME 57

Query: 323 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRG 380
            +   L V ++D + +  ++ +G     +  L+  K ++ W +L+   D + + +  G
Sbjct: 58  GADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLP--DPRAEEESGG 113

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
           +L +++V+ K L  KD+ G SDPY +  V+   E   ++ T+   LNP W E  E+ V  
Sbjct: 1   SLYIRIVEGKNLPAKDITGSSDPYCI--VKVDNEVIIRTATVWKTLNPFWGE--EYTVHL 56

Query: 323 ESTQH-LVVRIYDDEGIQSSELIG 345
               H +   + D++ +   ++IG
Sbjct: 57  PPGFHTVSFYVLDEDTLSRDDVIG 80

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 13/113 (11%)

Query: 248 ILPGDYSELELKPV--GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSK--- 302
           + P     L+ K    G L V + +AK L      G SD +   ++  LP+K+KKSK   
Sbjct: 11  VPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYL--LPDKSKKSKQKT 68

Query: 303 -TINNDLNPIWNEHFEF---IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRL 351
             +   +NP+WN  F +     ED S   L + ++D + + S++ +G   VRL
Sbjct: 69  PVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGG--VRL 119

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L VK ++A GL+     G S+PY VL +   P+K + S   N   NP W+EHF F +   
Sbjct: 1   LLVKNIKANGLSEA--AGSSNPYCVLEMDEPPQKYQSSTQKNTS-NPFWDEHFLFELSPN 57

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355
           S + L+  +YD+     S+ +G A V   EL 
Sbjct: 58  SKE-LLFEVYDNGKKSDSKFLGLAIVPFDELR 88

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
             L V +++A+ L   D+ G +DPY  + +    ++  K KT      LNP++NE F F 
Sbjct: 15  NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD 74

Query: 320 VEDESTQHLVVRI--YDDEGIQSSELIG 345
           +  E  + + V     D + +  +E+IG
Sbjct: 75  IPSEELEDISVEFLVLDSDRVTKNEVIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 42.2 bits (100), Expect = 5e-05
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 7/65 (10%)

Query: 262 GTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTK--KSKTI--NNDLNPIWNEHF 316
           G+LEV + + + L   D    +S+PY  +++  LP+K+K  K KT    N  NP++NE  
Sbjct: 14  GSLEVHIKECRNLAYADEKKKRSNPYVKVYL--LPDKSKQSKRKTSVKKNTTNPVFNETL 71

Query: 317 EFIVE 321
           ++ + 
Sbjct: 72  KYHIS 76

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 9/129 (6%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V +++A+ L   D     + +    +     +T+ S+T N   NP WNE   F+  + 
Sbjct: 2   LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNG--NPSWNEELMFVAAEP 59

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELE----PGKVKDVWLKLVKDLDVQRD---T 376
              HL++ + D  G    E +G A + L ++E       V   W  L +           
Sbjct: 60  FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKR 119

Query: 377 KYRGQVRIK 385
           K+  ++ ++
Sbjct: 120 KFASRIHLR 128

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 10/106 (9%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF--IV 320
           +L +++++AK L +K   G  DPY  + +     +  ++KT+   LNP W E F F    
Sbjct: 1   SLRLRILEAKNLPSK---GTRDPYCTVSLDQ--VEVARTKTVE-KLNPFWGEEFVFDDPP 54

Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
            D +   L     D        +IG  +V L +L+ G+ KD W  L
Sbjct: 55  PDVTFFTLSFYNKDKRSKDRDIVIG--KVALSKLDLGQGKDEWFPL 98

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 12/81 (14%)

Query: 262 GTLEVKLVQAKGLTNKDL-IGKSDPYAVL----FVRPLPEKTKKSKTINNDLNPIWNE-H 315
           G L V + +A  L   D   G SDPY       F +PL      ++ I  DLNP+W E  
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPL----YSTRIIRKDLNPVWEETW 56

Query: 316 FEFIVEDESTQH--LVVRIYD 334
           F  +  DE      L  R++D
Sbjct: 57  FVLVTPDEVKAGERLSCRLWD 77

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 38/138 (27%)

Query: 262 GTLEVKLVQAKGLTNKDL------------------------------IGKSDPYAVLFV 291
           GTL+V + +A  L N D+                                 SDPYA + +
Sbjct: 7   GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDL 66

Query: 292 RPLPEKTKKSKT--INNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQV 349
                  + ++T  I N  NP+WNE F       ++ H+   + D++ +  ++LIG A +
Sbjct: 67  ----AGARVARTRVIENSENPVWNESFHIYCAHYAS-HVEFTVKDNDVV-GAQLIGRAYI 120

Query: 350 RLCELEPGKVKDVWLKLV 367
            + +L  G+  + WL ++
Sbjct: 121 PVEDLLSGEPVEGWLPIL 138

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 10/103 (9%)

Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF-I 319
           + TL V +++A GL   D    +D Y  +F      + K+++ I N+ NP WN  F+F  
Sbjct: 27  LATLTVTVLRATGL-WGDYFTSTDGYVKVF---FGGQEKRTEVIWNNNNPRWNATFDFGS 82

Query: 320 VEDESTQHLVVRIYDDEGIQSSELIG-CAQVRLCELEPGKVKD 361
           VE      L   ++D +     +L+G C+ V     E G  +D
Sbjct: 83  VELSPGGKLRFEVWDRDNGWDDDLLGTCSVV----PEAGVHED 121

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 13/105 (12%)

Query: 264 LEVKLVQAKGLT---NKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
           LEV ++ A+GL     KD  G +D Y V    P   K  +++T+ +  NP WNE + + V
Sbjct: 2   LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP---KWVRTRTVEDSSNPRWNEQYTWPV 58

Query: 321 EDESTQHLVVRIYD------DEGIQSSELIGCAQVRLCELEPGKV 359
            D  T  L V ++D       E +Q   LIG  ++RL  LE  +V
Sbjct: 59  YDPCTV-LTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRV 102

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 13/70 (18%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 266 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDEST 325
           V +  A+GL+ +D  G +DPY ++       ++ +S    + L+P ++    F  +   +
Sbjct: 7   VHVHSAEGLSKQDSGGGADPYVIIKCE---GESVRSPVQKDTLSPEFDTQAIFYRKKPRS 63

Query: 326 QHLVVRIYDD 335
             + +++++ 
Sbjct: 64  P-IKIQVWNS 72

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT-INNDLNPIWNEHFEF--IV 320
           L V +++A+ +  KD  G +  + V  V  LP K +++KT +    NP++NE F F  + 
Sbjct: 18  LTVTVIRAQDIPTKDR-GGASSWQVHLVL-LPSKKQRAKTKVQRGPNPVFNETFTFSRVE 75

Query: 321 EDESTQHLV-VRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
            +E     +  R+Y  E ++   LIG   V L +L       VWL L
Sbjct: 76  PEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 263 TLEVKLVQAKGL-TNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
           +L++K+ +AK L          D Y    V    E+  ++KT+   L P + E F F + 
Sbjct: 1   SLKIKIGEAKNLPPRSGPNKMRDCYCT--VNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP 58

Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ 381
             + +HL   IYD + ++   +IG   ++  +L     KD W  L     V  D++ +G+
Sbjct: 59  -RTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQP---VDADSEVQGK 114

Query: 382 VRI 384
           V +
Sbjct: 115 VHL 117

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 6/57 (10%)

Query: 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI--NNDLNPIWNE 314
           P+G + V + +A  L N+   GKSDPYA      L     K +TI  ++ LNPIWNE
Sbjct: 709 PIGAIRVSVRKANDLRNEIPGGKSDPYA----TVLVNNLVKYRTIYGSSTLNPIWNE 761

Length = 1227

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 263 TLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF 318
            L V +++ + L   D   G SDPY  L +  LPEK  K KT  +    NP+++E F F
Sbjct: 17  ALLVNIIECRDLPAMDEQSGTSDPYVKLQL--LPEKEHKVKTRVLRKTRNPVYDETFTF 73

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	390
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	100.0
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.89
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.87
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.86
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.86
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.86
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.86
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.85
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.84
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.84
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.84
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.84
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.83
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.83
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.83
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.83
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.83
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.83
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.82
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.82
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.82
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.82
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.82
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.82
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.81
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.81
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.81
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.81
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.8
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.8
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.79
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.79
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.79
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.79
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.79
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.79
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.79
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.78
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.78
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.78
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.78
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.78
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.78
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.78
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.77
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.77
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.77
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.77
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.77
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.76
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.76
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.76
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.76
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.76
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.75
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.75
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.75
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.75
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.74
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.73
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.73
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.73
PLN03008	868	Phospholipase D delta	99.72
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.72
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.72
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.72
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.72
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.71
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.71
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.71
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.7
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.7
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.7
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.69
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.69
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.69
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.68
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.68
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.68
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.68
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.68
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.68
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.68
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.68
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.67
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.67
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.67
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.66
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.65
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.64
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.64
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.63
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.61
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.6
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.58
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.56
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.53
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.37
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.37
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.37
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.36
PF10296	91	DUF2404: Putative integral membrane protein conser	99.35
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.31
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.28
PLN02270	808	phospholipase D alpha	99.28
PLN02223	537	phosphoinositide phospholipase C	99.24
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.24
PLN02952	599	phosphoinositide phospholipase C	99.18
PLN02230	598	phosphoinositide phospholipase C 4	99.08
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.03
PLN02222	581	phosphoinositide phospholipase C 2	99.02
KOG0169	746	consensus Phosphoinositide-specific phospholipase	99.0
PLN02228	567	Phosphoinositide phospholipase C	98.96
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.86
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.85
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.83
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.82
PLN02352	758	phospholipase D epsilon	98.8
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.63
KOG3532	1051	consensus Predicted protein kinase [General functi	98.52
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.43
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.4
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	98.35
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.29
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.22
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.04
PLN02964	644	phosphatidylserine decarboxylase	98.02
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.85
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.66
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.5
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.15
PF15627	156	CEP76-C2: CEP76 C2 domain	96.74
KOG3837	523	consensus Uncharacterized conserved protein, conta	96.62
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	95.9
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	95.88
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	94.79
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	94.76
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	94.65
KOG1327	529	consensus Copine [Signal transduction mechanisms]	94.63
KOG1452	442	consensus Predicted Rho GTPase-activating protein	94.46
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	94.39
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	93.95
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	93.04
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	92.01
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	91.85
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	91.58
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	90.01
KOG1329	887	consensus Phospholipase D1 [Lipid transport and me	88.73
KOG2238	795	consensus Uncharacterized conserved protein TEX2,	87.97
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	87.54
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	86.64
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	86.5
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	86.41
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	86.15
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	84.73
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	84.36
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	82.42
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	82.11

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=100.00  E-value=6.5e-49  Score=398.49  Aligned_cols=310  Identities=29%  Similarity=0.540  Sum_probs=273.7

Q ss_pred             CCcccHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhhcCCCccceEEEeEEecCCCCCeEeeEEEEec-CCCeEEEEEE
Q 016385           66 SHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELE  144 (390)
Q Consensus        66 ~~~E~~~WlN~~l~~~Wp~~~~~~~~~i~~~l~~~l~~~~p~~l~~i~~~~~~lG~~~P~i~~ir~~~~-~~~~v~le~~  144 (390)
                      .|+|++||||.+|+++||.+++.+++.+.+++|+.|.+..|+||+.+.+.+||||++||+|.+||.|+. +.+.+.||++
T Consensus       218 nd~ESveWLNtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~  297 (1227)
T COG5038         218 NDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVD  297 (1227)
T ss_pred             cchhHHHHHHHHHHhheeccChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEee
Confidence            578999999999999999999999999999999999999999999999999999999999999999988 6789999999


Q ss_pred             EEEee---------------CceEEEEEE--eecC-eeeeEEEEEEEEEEEEEEEEeeCCcCCCccceEEEEeccceeEE
Q 016385          145 MQWDA---------------NSSIILAIK--TRLG-VALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLD  206 (390)
Q Consensus       145 ~~~~~---------------~~~i~l~v~--~~~g-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~~f~~~P~l~  206 (390)
                      +++.-               ++.|.|.++  ..+| +++||.|+++.|.|++|++++ |++.+|++..+.++|++.|.+|
T Consensus       298 ~sftP~d~sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~d  376 (1227)
T COG5038         298 FSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFD  376 (1227)
T ss_pred             eccCccchhhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCccee
Confidence            99962               344666664  2345 789999999999999999999 9999999999999999999999


Q ss_pred             EEEEEcc-----cccccCCCcHHHHHHHHHHHhhccccCCceeEeeCC---CCCcccccccceeEEEEEEeeecCCcccc
Q 016385          207 FKLKVVG-----GDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPIL---PGDYSELELKPVGTLEVKLVQAKGLTNKD  278 (390)
Q Consensus       207 f~l~~~g-----~~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~~ipl~---~~~~~~~~~~~~g~L~V~v~~a~~L~~~d  278 (390)
                      |.+.++|     .|++++|||+.|++++|..+++.++++|+.+.+++.   .++    ...+.|++.|+|.+|++|...+
T Consensus       377 f~l~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~----s~~aIGVv~vkI~sa~~lk~~d  452 (1227)
T COG5038         377 FILVPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGD----SGTAIGVVEVKIKSAEGLKKSD  452 (1227)
T ss_pred             EEEEEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccc----cCCeeEEEEEEEeeccCccccc
Confidence            9999976     489999999999999999999999999999998653   232    3478999999999999999888


Q ss_pred             --CCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEccccCC
Q 016385          279 --LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP  356 (390)
Q Consensus       279 --~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~  356 (390)
                        ..+..|||+.+...  +....||++.+++.||+|||+|++.+... ++.|.++|||.+...+|+.+|++.++|..+..
T Consensus       453 ~~i~~~vDpyit~~~~--~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~  529 (1227)
T COG5038         453 STINGTVDPYITVTFS--DRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQ  529 (1227)
T ss_pred             ccccCCCCceEEEEec--cccCCccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhh
Confidence              67899999999965  34456999999999999999999999865 56999999998888999999999999998876


Q ss_pred             Cceee-EEEEcccccccCCCCeeeeEEEEE--Eeec
Q 016385          357 GKVKD-VWLKLVKDLDVQRDTKYRGQVRIK--YPPY  389 (390)
Q Consensus       357 ~~~~~-~w~~L~~~~~~~~~~~~~G~i~l~--y~p~  389 (390)
                      ..... +-+.+      ..+.+..|+++.+  |+|+
T Consensus       530 ~~~~~ne~~e~------~~~~k~vGrL~yDl~ffp~  559 (1227)
T COG5038         530 NPVKKNELYEF------LRNTKNVGRLTYDLRFFPV  559 (1227)
T ss_pred             ccccccceeee------eccCccceEEEEeeeeecc
Confidence            55433 33344      3377889999999  9886

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.89  E-value=1.2e-22  Score=164.10  Aligned_cols=116  Identities=23%  Similarity=0.438  Sum_probs=100.7

Q ss_pred             eeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCC-CCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCC
Q 016385          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  339 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~  339 (390)
                      .|.|+|+|++|++++..+ .|++||||++.++   .++.+|+++.+ +.||.|||+|.|.+.+. ...|.|+|||+|.++
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg---~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~   75 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVG---HAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT   75 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEEC---CEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence            489999999999988777 7999999999997   56789999865 79999999999999764 458999999999999


Q ss_pred             CCceeEEEEEEcc-ccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          340 SSELIGCAQVRLC-ELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       340 ~d~~lG~~~v~l~-~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      +|++||++.+++. .+..|...+.|++|.+.    +.....|+|+|+
T Consensus        76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~----~~~~~~g~i~l~  118 (121)
T cd04016          76 MDERIAWTHITIPESVFNGETLDDWYSLSGK----QGEDKEGMINLV  118 (121)
T ss_pred             CCceEEEEEEECchhccCCCCccccEeCcCc----cCCCCceEEEEE
Confidence            9999999999996 57788888999999753    234577999998

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.87  E-value=1.2e-21  Score=160.65  Aligned_cols=117  Identities=21%  Similarity=0.482  Sum_probs=101.9

Q ss_pred             EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEec-----CCCCEEEEEEEEcCCC
Q 016385          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-----ESTQHLVVRIYDDEGI  338 (390)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~-----~~~~~L~v~v~d~d~~  338 (390)
                      ++|+|++|++|+.++..|.+||||+++++   .++++|++++++.||.|||+|.|.+..     +..+.|.++|||++.+
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~---~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~   77 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG---KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL   77 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEEC---CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence            47999999999999888999999999996   567899999999999999999999976     3567899999999998


Q ss_pred             CCCceeEEEEEEccccC--CCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          339 QSSELIGCAQVRLCELE--PGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       339 ~~d~~lG~~~v~l~~l~--~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      ++|++||++.++++++.  .+...+.|++|.+...  +..+.+|+|+++
T Consensus        78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~--~~~~~~Gei~l~  124 (126)
T cd08682          78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG--KDDKERGEIEVD  124 (126)
T ss_pred             CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC--CCccccceEEEE
Confidence            88999999999999987  5677889999975322  345678999986

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.86  E-value=9e-21  Score=154.08  Aligned_cols=116  Identities=31%  Similarity=0.451  Sum_probs=101.2

Q ss_pred             EEEEEEeeecC---CccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC-
Q 016385          263 TLEVKLVQAKG---LTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI-  338 (390)
Q Consensus       263 ~L~V~v~~a~~---L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~-  338 (390)
                      .|+|+|++|++   |..+|..|.+||||++.++   .++.+|+++++++||.|||+|.|.+.++. ..|.|+|||++.. 
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g---~~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~   76 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG---PKWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH   76 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEEC---CEEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence            37899999999   8888989999999999996   67889999999999999999999998764 4899999999886 


Q ss_pred             -----CCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEE
Q 016385          339 -----QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRI  384 (390)
Q Consensus       339 -----~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l  384 (390)
                           ++|++||++.+++.++..+...+.|++|....  .+..+..|+|+.
T Consensus        77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~~~~g~l~~  125 (126)
T cd08379          77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN--PSGVKKMGELEC  125 (126)
T ss_pred             ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC--CCCccCCcEEEe
Confidence                 38999999999999999999999999997532  124667788875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.86  E-value=8.7e-21  Score=152.82  Aligned_cols=109  Identities=22%  Similarity=0.376  Sum_probs=94.0

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEe----cCCCceEeeeccCCCCCCeeeeEEEEEEec---CCCCEEEEEEEEc
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVR----PLPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIYDD  335 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~----~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~---~~~~~L~v~v~d~  335 (390)
                      .|+|+|++|++|+..+ .|.+||||++++.    +...++++|+++++++||.|||+|.|.+..   +....|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            3899999999999887 4999999999984    222346789999999999999999999974   3446799999999


Q ss_pred             CCCCCCceeEEEEEEccccCCCceeeEEEEccccccc
Q 016385          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDV  372 (390)
Q Consensus       336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~  372 (390)
                      +..++|++||++.+++.++..+...+.|++|.+..++
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~~  116 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIHM  116 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcccc
Confidence            9888899999999999999988889999999876544

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.86  E-value=1.2e-20  Score=153.53  Aligned_cols=119  Identities=33%  Similarity=0.533  Sum_probs=104.9

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCc
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~  342 (390)
                      .|+|+|++|++|+..|..|.+||||+++++  +...++|++++++.||.|||+|.|.+.+. .+.|.++|||++..++|+
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~--~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~   77 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG--GKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD   77 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC--CEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence            378999999999999988999999999986  24678999999999999999999998765 568999999999998999


Q ss_pred             eeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE--Eee
Q 016385          343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPP  388 (390)
Q Consensus       343 ~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p  388 (390)
                      +||++.+++.++..+...+.|++|...    ++.+..|+|++.  |.|
T Consensus        78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~----~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          78 FMGSAFVDLSTLELNKPTEVKLKLEDP----NSDEDLGYISLVVTLTP  121 (121)
T ss_pred             ceEEEEEEHHHcCCCCCeEEEEECCCC----CCccCceEEEEEEEECC
Confidence            999999999999988889999999642    134678999998  766

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.86  E-value=6.3e-21  Score=154.59  Aligned_cols=114  Identities=33%  Similarity=0.550  Sum_probs=100.4

Q ss_pred             eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccC-CCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCC
Q 016385          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (390)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~  340 (390)
                      |.|+|+|++|++|++.+..+.+||||+++++   .++++|+++. ++.||.|||.|.|.+.....+.|.++|||++..+ 
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-   76 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-   76 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEEC---CCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence            7899999999999999988999999999997   4677888874 5799999999999998766779999999999876 


Q ss_pred             CceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       341 d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      |++||++.+++.++..+...+.|++|..      +++.+|+|+++
T Consensus        77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~------~~~~~G~i~l~  115 (118)
T cd08681          77 PDLIGDTEVDLSPALKEGEFDDWYELTL------KGRYAGEVYLE  115 (118)
T ss_pred             CcceEEEEEecHHHhhcCCCCCcEEecc------CCcEeeEEEEE
Confidence            9999999999999877767789999964      45688999987

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.85  E-value=1.8e-20  Score=152.12  Aligned_cols=113  Identities=26%  Similarity=0.530  Sum_probs=100.6

Q ss_pred             EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCce
Q 016385          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (390)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~  343 (390)
                      |+|+|++|++|++.+..+.+||||++++.+.+...++|++++++.||.|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence            789999999999988889999999999865445678999999999999999999999776667899999999998 8999


Q ss_pred             eEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       344 lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      ||++.+++.++..+...+.|++|.+        +.+|+|+++
T Consensus        81 iG~~~~~l~~l~~g~~~~~~~~L~~--------~~~g~l~~~  114 (119)
T cd04036          81 LGTVLFDVSKLKLGEKVRVTFSLNP--------QGKEELEVE  114 (119)
T ss_pred             cEEEEEEHHHCCCCCcEEEEEECCC--------CCCceEEEE
Confidence            9999999999999999999999953        357888876

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.84  E-value=4.3e-20  Score=149.18  Aligned_cols=111  Identities=28%  Similarity=0.452  Sum_probs=100.4

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCc
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~  342 (390)
                      +++|+|++|++|+..+..+.+||||+++++   ++.++|++++++.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~   77 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG---NEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE   77 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEEC---CEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            478999999999999988999999999986   56789999999999999999999998776789999999999988999


Q ss_pred             eeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       343 ~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      +||++.++++++..+...+.|++|.+         ..|+|++.
T Consensus        78 ~iG~~~~~l~~l~~~~~~~~w~~L~~---------~~G~~~~~  111 (116)
T cd08376          78 FIGRCEIDLSALPREQTHSLELELED---------GEGSLLLL  111 (116)
T ss_pred             eEEEEEEeHHHCCCCCceEEEEEccC---------CCcEEEEE
Confidence            99999999999988888999999963         15888776

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.84  E-value=3.3e-20  Score=151.50  Aligned_cols=120  Identities=25%  Similarity=0.498  Sum_probs=105.2

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCc
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~  342 (390)
                      +|+|+|++|++|...+..+.+||||+++++   ....+|++++++.||.|||+|.|.+.+.....|.|+|||++..++++
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~   77 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN---GQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND   77 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEEC---CEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            489999999999999888899999999986   56789999999999999999999998766678999999999988999


Q ss_pred             eeEEEEEEccccCCCceeeEEEEccccccc-CCCCeeeeEEEEE
Q 016385          343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDV-QRDTKYRGQVRIK  385 (390)
Q Consensus       343 ~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~-~~~~~~~G~i~l~  385 (390)
                      +||++.++++++..+...+.|+.|.+.... .+.++..|.|++.
T Consensus        78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~  121 (123)
T cd04025          78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLK  121 (123)
T ss_pred             EeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEE
Confidence            999999999999877777899999874332 3467888999875

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.84  E-value=5.2e-20  Score=152.49  Aligned_cols=116  Identities=26%  Similarity=0.486  Sum_probs=100.8

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~  338 (390)
                      ...|.|+|+|++|++|++.|..|.+||||+++++   .+.++|++++++.||.|||+|.|.+.++..+.|.++|||++..
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~---~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~   88 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG---SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF   88 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence            5789999999999999999989999999999986   5689999999999999999999999887777999999999998


Q ss_pred             CCCceeEEEEEEccccCC-----CceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          339 QSSELIGCAQVRLCELEP-----GKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~-----~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      ++|++||++.+++.++..     ......|..+        ..+.+|+|+++
T Consensus        89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~--------~~~~~g~i~l~  132 (136)
T cd08375          89 SPDDFLGRTEIRVADILKETKESKGPITKRLLL--------HEVPTGEVVVK  132 (136)
T ss_pred             CCCCeeEEEEEEHHHhccccccCCCcEEEEecc--------ccccceeEEEE
Confidence            899999999999999865     2222345444        45678999987

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.84  E-value=4.6e-20  Score=155.17  Aligned_cols=119  Identities=20%  Similarity=0.420  Sum_probs=101.9

Q ss_pred             EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCC-CCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCc
Q 016385          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (390)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~  342 (390)
                      |+|+|++|++|+.++..|.+||||+++++   .+..+|+++.+ +.||.|||.|.|.+.++..+.+.++|||++..++|+
T Consensus         2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~---~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd   78 (150)
T cd04019           2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLG---NQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDE   78 (150)
T ss_pred             EEEEEEEeECCCCCCCCCCCCeEEEEEEC---CEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCC
Confidence            78999999999999999999999999997   57888998866 699999999999998766679999999999888899


Q ss_pred             eeEEEEEEccccCCC----ceeeEEEEcccccc---cCCCCeeeeEEEEE
Q 016385          343 LIGCAQVRLCELEPG----KVKDVWLKLVKDLD---VQRDTKYRGQVRIK  385 (390)
Q Consensus       343 ~lG~~~v~l~~l~~~----~~~~~w~~L~~~~~---~~~~~~~~G~i~l~  385 (390)
                      +||++.++++++..+    ...+.|++|.+..+   .++..+.+|+|++.
T Consensus        79 ~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~  128 (150)
T cd04019          79 PLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLR  128 (150)
T ss_pred             eEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEE
Confidence            999999999998643    45689999987532   12345678999988

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.83  E-value=2.5e-20  Score=148.22  Aligned_cols=105  Identities=15%  Similarity=0.251  Sum_probs=91.3

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecC-CCceEeeeccCCCCCCeeeeEEEEEEec--CCCCEEEEEEEEc
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL-PEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYDD  335 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~kT~v~~~~~nP~w~e~f~f~v~~--~~~~~L~v~v~d~  335 (390)
                      ...|.|+|+|++|++|+   ..|.+||||++++.+. +..+++|+++++|+||.|||+|.|.+..  ..+..|.++|||+
T Consensus        11 ~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~   87 (118)
T cd08677          11 KQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCC   87 (118)
T ss_pred             CcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeC
Confidence            56899999999999998   3467999999999753 3357789999999999999999999865  3567899999999


Q ss_pred             CCCCCCceeEEEEEEccccCCCceeeEEEEc
Q 016385          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKL  366 (390)
Q Consensus       336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L  366 (390)
                      |.++++++||++.++++++..+...++|-+|
T Consensus        88 Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          88 DRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             CCCCCCceEEEEEEccccccCCccccchhcC
Confidence            9999999999999999988777778889654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.83  E-value=4.4e-20  Score=151.58  Aligned_cols=117  Identities=30%  Similarity=0.428  Sum_probs=100.8

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCC---CCEEEEEEEEcCCCC
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES---TQHLVVRIYDDEGIQ  339 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~---~~~L~v~v~d~d~~~  339 (390)
                      .|+|+|++|++|...+..|.+||||+++++   .+.++|++++++.||.|||.|.|.+.++.   ...|.++|||++..+
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~   77 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD---GQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG   77 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence            378999999999999888999999999987   56789999999999999999999987542   368999999999876


Q ss_pred             -CCceeEEEEEEccccC-CCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          340 -SSELIGCAQVRLCELE-PGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       340 -~d~~lG~~~v~l~~l~-~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                       ++++||++.++++++. .+.....|++|.+..   ..++.+|+|+++
T Consensus        78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~  122 (127)
T cd04022          78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG---LFSRVRGEIGLK  122 (127)
T ss_pred             CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC---CCCCccEEEEEE
Confidence             7999999999999987 567778999997531   134578999998

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.83  E-value=7.3e-20  Score=150.50  Aligned_cols=120  Identities=33%  Similarity=0.516  Sum_probs=103.7

Q ss_pred             eEEEEEEeeecCCccccC--CCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCC
Q 016385          262 GTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  339 (390)
Q Consensus       262 g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~  339 (390)
                      |.|+|+|++|++|+..+.  .+.+||||+++++   .+.++|++++++.||.|||+|.|.+.+...+.|.++|||++..+
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~   77 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG---AQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA   77 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC---CEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence            789999999999999888  8899999999986   56789999999999999999999998766789999999999988


Q ss_pred             CCceeEEEEEEccccC---CCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          340 SSELIGCAQVRLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       340 ~d~~lG~~~v~l~~l~---~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      ++++||++.+++.++.   .....+.|++|.+.... +....+|+|+++
T Consensus        78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~-~~~~~~G~i~l~  125 (128)
T cd04024          78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPG-KTSVVSGEIHLQ  125 (128)
T ss_pred             CCCcceEEEEEHHHhhcccccCccceeEEccCcccC-ccccccceEEEE
Confidence            8999999999999986   23446899999764222 345678999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.83  E-value=4.6e-20  Score=150.06  Aligned_cols=105  Identities=27%  Similarity=0.456  Sum_probs=94.1

Q ss_pred             eeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEE-e--cCCCCEEEEEEEEc
Q 016385          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIV-E--DESTQHLVVRIYDD  335 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v-~--~~~~~~L~v~v~d~  335 (390)
                      .|.|.|+|++|++|+..+ .+.+||||++++.+..  ..+++|++++++.||.|||+|.|.+ .  +.....|.++|||+
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~   90 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH   90 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence            688999999999999999 8999999999998654  3478999999999999999999987 2  33567899999999


Q ss_pred             CCCCCCceeEEEEEEccccCCCceeeEEEEc
Q 016385          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKL  366 (390)
Q Consensus       336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L  366 (390)
                      +..+++++||++.+++.++..+...+.|++|
T Consensus        91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            9999999999999999999888878999987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.83  E-value=1.8e-19  Score=147.59  Aligned_cols=120  Identities=23%  Similarity=0.404  Sum_probs=100.0

Q ss_pred             eeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCC
Q 016385          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~  340 (390)
                      ...|+|+|++|++|+..   +.+||||+++++  +.+..+|++. ++.||.|||+|.|.+.......+.+.|||++..++
T Consensus         3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~--~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~   76 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLN--EVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK   76 (126)
T ss_pred             eeEEEEEEEEeeCCCCC---CCCCeeEEEEEC--CEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence            45799999999999864   478999999996  2345788874 68999999999998765544689999999999999


Q ss_pred             CceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE--Eee
Q 016385          341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPP  388 (390)
Q Consensus       341 d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p  388 (390)
                      |++||++.+++.++..+...+.|++|.+...  ...+..|+|+++  |.+
T Consensus        77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~--~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          77 DSEIAEVTVQLSKLQNGQETDEWYPLSSASP--LKGGEWGSLRIRARYSH  124 (126)
T ss_pred             CCeEEEEEEEHhHccCCCcccEeEEcccCCC--CCCCcCcEEEEEEEEEc
Confidence            9999999999999988888899999986421  245677999999  865

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.83  E-value=1.3e-19  Score=150.73  Aligned_cols=110  Identities=25%  Similarity=0.430  Sum_probs=96.5

Q ss_pred             ceeEEEEEEeeecCCcccc-CCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEE-Ec
Q 016385          260 PVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY-DD  335 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~-d~  335 (390)
                      ..|.|.|+|++|++|...+ ..|.+||||++++.+.+.  .++||+++++++||.|||+|.|.+. ..+..|.++|| |+
T Consensus        27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~  105 (146)
T cd04028          27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY  105 (146)
T ss_pred             CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence            3589999999999998864 568899999999986543  3789999999999999999999998 66779999999 67


Q ss_pred             CCCCCCceeEEEEEEccccCCCceeeEEEEccccc
Q 016385          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDL  370 (390)
Q Consensus       336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~  370 (390)
                      +.++++++||++.++|+++..+.....|++|.+..
T Consensus       106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~  140 (146)
T cd04028         106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS  140 (146)
T ss_pred             CCCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence            88888999999999999997777788999998754

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.82  E-value=1.8e-19  Score=146.34  Aligned_cols=116  Identities=26%  Similarity=0.445  Sum_probs=99.3

Q ss_pred             EEEEEeeecCCcccc-CCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCc
Q 016385          264 LEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (390)
Q Consensus       264 L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~  342 (390)
                      |.|+|++|++|+..+ ..|.+||||.++++  +...++|+++++++||.|||+|.|.+.+. ...|.|.|||++.+++|+
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~   78 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--QEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS   78 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--CccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence            679999999999864 45789999999996  33468999999999999999999999754 469999999999999999


Q ss_pred             eeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       343 ~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      +||++.++++++..+...+.|++|.+.   ..+.+.+|+|+++
T Consensus        79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~---~~~~~~~G~i~l~  118 (121)
T cd08401          79 VIGKVAIKKEDLHKYYGKDTWFPLQPV---DADSEVQGKVHLE  118 (121)
T ss_pred             eEEEEEEEHHHccCCCCcEeeEEEEcc---CCCCcccEEEEEE
Confidence            999999999999888888999999863   1234468999986

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.82  E-value=5.4e-20  Score=151.80  Aligned_cols=96  Identities=34%  Similarity=0.619  Sum_probs=88.8

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~  338 (390)
                      ...|.|+|+|.+|.+|..+|..+++||||++.++   .++.+|+++++++||+|||.|.|.+.++ ...|.+.|||+|.+
T Consensus         3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg---~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f   78 (168)
T KOG1030|consen    3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG---NQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF   78 (168)
T ss_pred             ccceEEEEEEEeecCeeeeccccCCCCeEEEEEC---CeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence            4689999999999999999988999999999998   7889999999999999999999999988 45999999999999


Q ss_pred             CCCceeEEEEEEccccCCCc
Q 016385          339 QSSELIGCAQVRLCELEPGK  358 (390)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~~~  358 (390)
                      ++||++|.+++++..+....
T Consensus        79 s~dD~mG~A~I~l~p~~~~~   98 (168)
T KOG1030|consen   79 SSDDFMGEATIPLKPLLEAQ   98 (168)
T ss_pred             CcccccceeeeccHHHHHHh
Confidence            99999999999998875543

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.82  E-value=2.7e-19  Score=146.69  Aligned_cols=119  Identities=29%  Similarity=0.480  Sum_probs=101.2

Q ss_pred             EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCce
Q 016385          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (390)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~  343 (390)
                      |.|+|++|++|+.  ..|.+||||++++.. ..+.++|++++++.||.|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~   76 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE-PPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF   76 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECC-CCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence            5799999999987  678999999999862 2456899999999999999999999864 36689999999999889999


Q ss_pred             eEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE--Eee
Q 016385          344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPP  388 (390)
Q Consensus       344 lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p  388 (390)
                      ||++.++++++..+...+.|++|.+...  ++....|+|+++  |.+
T Consensus        77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~--~~~~~~G~l~l~~~~~~  121 (126)
T cd08678          77 LGLAIVPFDELRKNPSGRQIFPLQGRPY--EGDSVSGSITVEFLFME  121 (126)
T ss_pred             EEEEEEeHHHhccCCceeEEEEecCCCC--CCCCcceEEEEEEEEec
Confidence            9999999999988877889999975321  245678999998  654

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.82  E-value=2.1e-19  Score=146.18  Aligned_cols=112  Identities=34%  Similarity=0.622  Sum_probs=99.3

Q ss_pred             eEEEEEEeeecCCccccC------CCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEc
Q 016385          262 GTLEVKLVQAKGLTNKDL------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD  335 (390)
Q Consensus       262 g~L~V~v~~a~~L~~~d~------~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~  335 (390)
                      |.|+|+|++|++|+..+.      .|.+||||+++++   .+.++|++++++.||.|||+|.|.+.+...+.|.++|||+
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~   77 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---AQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE   77 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC---CEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence            789999999999998774      3689999999997   4789999999999999999999999876678999999999


Q ss_pred             CCCCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      +.. +|++||++.+++.++..+...+.|++|..        ...|+|+++
T Consensus        78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~--------~~~G~~~~~  118 (121)
T cd08391          78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLED--------VKSGRLHLK  118 (121)
T ss_pred             CCC-CCCcEEEEEEEHHHhcccCccceEEECcC--------CCCceEEEE
Confidence            987 89999999999999987777899999953        357988876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.82  E-value=1.4e-19  Score=147.94  Aligned_cols=109  Identities=35%  Similarity=0.576  Sum_probs=98.2

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDE  336 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d  336 (390)
                      ...|.|.|+|++|++|+..+..|.+||||++++.+.+.+.++|++++++.||.|||+|.|.+...  ....|.++|||++
T Consensus        13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~   92 (124)
T cd08387          13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD   92 (124)
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence            46789999999999999999889999999999976656788999999999999999999998643  3568999999999


Q ss_pred             CCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (390)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (390)
                      .++++++||++.++++++..+...+.|++|+
T Consensus        93 ~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          93 QFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            9989999999999999998777889999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.82  E-value=1.5e-19  Score=147.75  Aligned_cols=109  Identities=23%  Similarity=0.444  Sum_probs=95.6

Q ss_pred             cceeEEEEEEeeecCCccccCC-CCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEec--CCCCEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIY  333 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~--~~~~~L~v~v~  333 (390)
                      ...+.|.|+|++|++|+.++.. |.+||||++++.+.+  ..+++|+++++++||.|||+|.|.+..  .....|.++||
T Consensus        12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~   91 (125)
T cd08393          12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW   91 (125)
T ss_pred             CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence            4567899999999999999875 889999999997654  346799999999999999999999864  34568999999


Q ss_pred             EcCCCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (390)
                      |++.++++++||++.++|.++..+.....|++|+
T Consensus        92 d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          92 HRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             eCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            9999999999999999999998777788999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.81  E-value=2e-19  Score=146.92  Aligned_cols=109  Identities=18%  Similarity=0.354  Sum_probs=96.0

Q ss_pred             cceeEEEEEEeeecCCccccC-CCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  333 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~  333 (390)
                      ...|.|.|+|++|++|+..+. .+.+||||++++.+.+  ..++||++++++.||.|||+|.|.+...  ....|.|+||
T Consensus        12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~   91 (125)
T cd04029          12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW   91 (125)
T ss_pred             CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            567899999999999998765 4789999999997654  3467899999999999999999998653  4568999999


Q ss_pred             EcCCCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (390)
                      |++..+++++||++.+++.++......+.|++|+
T Consensus        92 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          92 HYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             ECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            9999999999999999999998888899999983

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=3.2e-19  Score=144.89  Aligned_cols=112  Identities=22%  Similarity=0.435  Sum_probs=96.2

Q ss_pred             EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCce
Q 016385          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (390)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~  343 (390)
                      |+|+|++|++|+..    .+||||+++++   .+..+|++++++.||.|||+|.|.+.++....|.++|||++.. ++++
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~---~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~   73 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLG---NYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDF   73 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEEC---CccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCce
Confidence            78999999999876    78999999997   4678999999999999999999998876677999999999987 7899


Q ss_pred             eEEEEEEccccCCC-----ceeeEEEEcccccccCCCCeeeeEEEEE-Ee
Q 016385          344 IGCAQVRLCELEPG-----KVKDVWLKLVKDLDVQRDTKYRGQVRIK-YP  387 (390)
Q Consensus       344 lG~~~v~l~~l~~~-----~~~~~w~~L~~~~~~~~~~~~~G~i~l~-y~  387 (390)
                      ||++.++++++..+     ...+.|++|.+..    +.+.+|+|+++ ++
T Consensus        74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~----~~~~~G~i~l~~~~  119 (121)
T cd08378          74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK----GGRVGGELMLAVWF  119 (121)
T ss_pred             eeeEEEEhHhCcCCCCCCCCCCcceEEccCCC----CCccceEEEEEEEe
Confidence            99999999998542     2356999997642    35688999998 44

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.81  E-value=5.2e-19  Score=150.26  Aligned_cols=120  Identities=28%  Similarity=0.489  Sum_probs=101.0

Q ss_pred             ceeEEEEEEeeecCCcccc------------------------------CCCCCCcEEEEEEecCCCceEeeeccCCCCC
Q 016385          260 PVGTLEVKLVQAKGLTNKD------------------------------LIGKSDPYAVLFVRPLPEKTKKSKTINNDLN  309 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d------------------------------~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~n  309 (390)
                      -.|.|+|+|.+|++|+++|                              ..|.+||||+++++  +.+..+|++++++.|
T Consensus         5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~--~~~~~rT~v~~~~~n   82 (158)
T cd04015           5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA--GARVARTRVIENSEN   82 (158)
T ss_pred             EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC--CeEeeEEEEeCCCCC
Confidence            4699999999999999987                              24668999999997  235679999999999


Q ss_pred             CeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          310 PIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       310 P~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      |.|||+|.|.+.+. .+.|.|+|||+|..+ +++||++.++++++..+...+.|++|.....  +..+..|+|+++
T Consensus        83 P~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~--~~~~~~~~l~v~  154 (158)
T cd04015          83 PVWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNG--KPPKPGAKIRVS  154 (158)
T ss_pred             CccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCC--CCCCCCCEEEEE
Confidence            99999999998765 468999999999875 6899999999999988888999999976421  234456899988

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.81  E-value=3.8e-19  Score=145.44  Aligned_cols=109  Identities=32%  Similarity=0.535  Sum_probs=97.8

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDE  336 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d  336 (390)
                      ...|.|+|+|++|++|+..+..+.+||||++++.+...+.++|++++++.||.|||+|.|.+...  ....|.|+|||++
T Consensus        13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d   92 (124)
T cd08385          13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD   92 (124)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence            46789999999999999999889999999999986656688999999999999999999998643  3568999999999


Q ss_pred             CCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (390)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (390)
                      .++++++||++.++++++..+...++|++|.
T Consensus        93 ~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          93 RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            9989999999999999998888889999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.80  E-value=6.1e-19  Score=144.14  Aligned_cols=120  Identities=28%  Similarity=0.489  Sum_probs=100.3

Q ss_pred             eeEEEEEEeeecCCcccc-CCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCC
Q 016385          261 VGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  339 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~  339 (390)
                      .|.|+|+|.+|++|+..+ ..+.+||||++.+... .+.++|++++++.||.|||.|.|.+. ...+.|.++|||++..+
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~   78 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR   78 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence            489999999999999755 3467899999999732 36789999999999999999999987 44679999999999988


Q ss_pred             CCceeEEEEEEccccCCCceee-EEEEcccccccCCCCeeeeEEEEE--Eee
Q 016385          340 SSELIGCAQVRLCELEPGKVKD-VWLKLVKDLDVQRDTKYRGQVRIK--YPP  388 (390)
Q Consensus       340 ~d~~lG~~~v~l~~l~~~~~~~-~w~~L~~~~~~~~~~~~~G~i~l~--y~p  388 (390)
                      +|++||++.+++.++..+...+ .|..+.      .+++..|+|+++  |.|
T Consensus        79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~------~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL------RNGKPVGELNYDLRFFP  124 (124)
T ss_pred             CCceeEEEEEEHHHhccCccccCcchhhh------cCCccceEEEEEEEeCC
Confidence            9999999999999998766554 344443      266778999999  887

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.80  E-value=3.4e-19  Score=142.67  Aligned_cols=103  Identities=26%  Similarity=0.507  Sum_probs=90.0

Q ss_pred             eEEEEEEeeecCCccccCC-CCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC---CCCEEEEEEEEcCC
Q 016385          262 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG  337 (390)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~---~~~~L~v~v~d~d~  337 (390)
                      |+|+|+|++|++|+..+.. +.+||||++++.+.+...++|+++++++||.|||+|.|.+...   ..+.|.++|||+|.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            7899999999999999887 8999999999975555678999999999999999999987654   35689999999999


Q ss_pred             CCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (390)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (390)
                      .++|++||++.+++.++.   ....|+++.
T Consensus        81 ~~~dd~lG~~~i~l~~l~---~~~~~~~~~  107 (111)
T cd04041          81 FTADDRLGRVEIDLKELI---EDRNWMGRR  107 (111)
T ss_pred             CCCCCcceEEEEEHHHHh---cCCCCCccc
Confidence            989999999999999987   345677763

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.79  E-value=1.1e-18  Score=143.24  Aligned_cols=109  Identities=21%  Similarity=0.291  Sum_probs=93.7

Q ss_pred             cceeEEEEEEeeecCCccccCC-CCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEE-Eec--CCCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VED--ESTQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~-v~~--~~~~~L~v~v~d  334 (390)
                      ...+.|+|+|++|++|+..+.. +.+||||++++.+...++.||++++++.||.|||+|.|. +..  .....|.++|||
T Consensus        13 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d   92 (128)
T cd08388          13 SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLS   92 (128)
T ss_pred             CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEE
Confidence            4567999999999999998876 889999999998666667899999999999999999993 432  234579999999


Q ss_pred             cCCCCCCceeEEEEEEccccCCC--ceeeEEEEcc
Q 016385          335 DEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLV  367 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~--~~~~~w~~L~  367 (390)
                      +|.+++|++||++.+++.++..+  .....|++|+
T Consensus        93 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~  127 (128)
T cd08388          93 FDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ  127 (128)
T ss_pred             cCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence            99999999999999999998544  6688999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.79  E-value=2.3e-18  Score=141.05  Aligned_cols=118  Identities=19%  Similarity=0.309  Sum_probs=100.0

Q ss_pred             ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCC
Q 016385          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  339 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~  339 (390)
                      |.++|+|+|++|++|...+..|.+||||++.++   ++.++|++++++.||.|||.|.|.+.+. ...|.++|||++.. 
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~-   75 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCE---GESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL-   75 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEEC---CEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence            467999999999999999888999999999986   5678999999999999999999988765 66899999999886 


Q ss_pred             CCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          340 SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       340 ~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      +|++||++.+++++...  ....|++|.+... ..+++..|+|.++
T Consensus        76 ~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~-~~~~~~~G~i~~~  118 (126)
T cd04046          76 CDEFLGQATLSADPNDS--QTLRTLPLRKRGR-DAAGEVPGTISVK  118 (126)
T ss_pred             CCCceEEEEEecccCCC--cCceEEEcccCCC-CCCCCCCCEEEEE
Confidence            48999999999987643  3456778864322 3577889999998

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.79  E-value=2.3e-18  Score=139.69  Aligned_cols=115  Identities=32%  Similarity=0.605  Sum_probs=99.3

Q ss_pred             eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCC
Q 016385          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  341 (390)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d  341 (390)
                      |.|+|+|++|++|+..+..+.+||||++++.   ...++|++++++.||.|||+|.|.+.+. .+.+.++|||++..+++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~   76 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV---NARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP   76 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC---CEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence            7899999999999999988999999999986   4567999999999999999999998754 46899999999988889


Q ss_pred             ceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       342 ~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      ++||++.+++.++..+.  ..|++|...   ....+..|+|.++
T Consensus        77 ~~iG~~~~~l~~~~~~~--~~~~~l~~~---~~~~~~~G~i~l~  115 (119)
T cd08377          77 EFLGKVAIPLLSIKNGE--RKWYALKDK---KLRTRAKGSILLE  115 (119)
T ss_pred             ceeeEEEEEHHHCCCCC--ceEEECccc---CCCCceeeEEEEE
Confidence            99999999999987653  579998643   1244578999987

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.79  E-value=1.8e-18  Score=143.24  Aligned_cols=119  Identities=27%  Similarity=0.472  Sum_probs=99.7

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEecCC----CceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~  338 (390)
                      .|+|+|++|++|+..+..|.+||||++++....    ...++|++++++.||.|||+|.|.+... ...|.++|||++..
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~   79 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL   79 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence            378999999999999988999999999997431    1256899999999999999999998654 46899999999999


Q ss_pred             CCCceeEEEEEEccccCCCc------eeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          339 QSSELIGCAQVRLCELEPGK------VKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~~~------~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      +++++||++.++++++..+.      ....|++|.+.   .+.++..|+|+++
T Consensus        80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~---~~~~~~~G~l~~~  129 (133)
T cd04033          80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR---SSKSRVKGHLRLY  129 (133)
T ss_pred             CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec---CCCCcceeEEEEE
Confidence            89999999999999986543      34699999753   2245679999998

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.79  E-value=9.7e-19  Score=146.37  Aligned_cols=106  Identities=24%  Similarity=0.342  Sum_probs=90.2

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEe---------------cCCC
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE---------------DEST  325 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~---------------~~~~  325 (390)
                      .|+|+|++|++|..  ..|.+||||++++.+..  .+.++|++++++.||.|||+|.|.+.               +...
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            37899999999987  46899999999997432  25678999999999999999999985               1233


Q ss_pred             CEEEEEEEEcCCCCCCceeEEEEEEccccCCC-ceeeEEEEccccc
Q 016385          326 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKLVKDL  370 (390)
Q Consensus       326 ~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~-~~~~~w~~L~~~~  370 (390)
                      ..|.++|||++..++|++||++.+++.++..+ ...+.||+|.+..
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~  124 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE  124 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence            57999999999888999999999999999876 5678999998753

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.79  E-value=1.8e-18  Score=140.63  Aligned_cols=116  Identities=23%  Similarity=0.498  Sum_probs=98.4

Q ss_pred             EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCce
Q 016385          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (390)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~  343 (390)
                      |.|+|++|++|.+++..|.+||||+++++  +...++|++++++.||.|||.|.|.+.+. .+.+.+++||++..++|++
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~   78 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD--NEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDV   78 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEEC--CEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCE
Confidence            78999999999999999999999999986  23457999999999999999999998644 4689999999999999999


Q ss_pred             eEEEEEEccccCCC-ceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          344 IGCAQVRLCELEPG-KVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       344 lG~~~v~l~~l~~~-~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      ||++.++++++..+ ...+.|++|.+.   ..+....|+|++.
T Consensus        79 iG~~~~~~~~~~~~~~~~~~W~~L~~~---~~~~~~~G~i~l~  118 (121)
T cd04054          79 IGKVSLTREVISAHPRGIDGWMNLTEV---DPDEEVQGEIHLE  118 (121)
T ss_pred             EEEEEEcHHHhccCCCCCCcEEECeee---CCCCccccEEEEE
Confidence            99999999888653 346899999753   2245578999875

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.79  E-value=1e-18  Score=141.91  Aligned_cols=108  Identities=20%  Similarity=0.339  Sum_probs=94.5

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC---ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  333 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~  333 (390)
                      ...+.|.|+|++|+||+..+..+.+||||++++.+++.   ..++|++++++.||.|||+|.|.+...  .+..|.++||
T Consensus        11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~   90 (124)
T cd08680          11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVC   90 (124)
T ss_pred             CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEE
Confidence            56789999999999999988888999999999987663   478999999999999999999998643  5679999999


Q ss_pred             EcCCCCCCceeEEEEEEccccCCC-ceeeEEEEc
Q 016385          334 DDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKL  366 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v~l~~l~~~-~~~~~w~~L  366 (390)
                      |++..+++++||++.++++++... .....|++|
T Consensus        91 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          91 SVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             eCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            999999999999999999998444 456788875

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.78  E-value=3.2e-18  Score=139.64  Aligned_cols=117  Identities=26%  Similarity=0.524  Sum_probs=98.3

Q ss_pred             EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCC--C
Q 016385          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS--S  341 (390)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~--d  341 (390)
                      |+|+|++|++|...+..+.+||||+++++  +.+.++|++++++.||.|||+|.|.+..  .+.|.++|||++..++  |
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d   77 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVD--GGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ   77 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEEC--CccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence            78999999999999988999999999995  3567899999999999999999999965  6799999999998765  5


Q ss_pred             ceeEEEEEEccccCCCc-eeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          342 ELIGCAQVRLCELEPGK-VKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       342 ~~lG~~~v~l~~l~~~~-~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      ++||++.+++.++.... ....|++|.+.. ....+...|+|.++
T Consensus        78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~-~~~~~~~~G~v~~~  121 (123)
T cd08382          78 GFLGCVRIRANAVLPLKDTGYQRLDLRKLK-KSDNLSVRGKIVVS  121 (123)
T ss_pred             ceEeEEEEEHHHccccCCCccceeEeecCC-CCCCceEeeEEEEE
Confidence            89999999999986543 447899996532 12456778998875

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.78  E-value=1.5e-18  Score=137.46  Aligned_cols=100  Identities=31%  Similarity=0.408  Sum_probs=90.0

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCc
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~  342 (390)
                      .|.|+|++|++|+..+..+.+||||+++++   ++.++|++++++.||.|||.|.|.+.++..+.|.++|||++.   ++
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~   74 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK   74 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEEC---CEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence            378999999999998888999999999997   478899999999999999999999998777899999999886   78


Q ss_pred             eeEEEEEEccccCCC--ceeeEEEEccc
Q 016385          343 LIGCAQVRLCELEPG--KVKDVWLKLVK  368 (390)
Q Consensus       343 ~lG~~~v~l~~l~~~--~~~~~w~~L~~  368 (390)
                      +||++.+++.++..+  ...+.||+|.+
T Consensus        75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~~  102 (105)
T cd04050          75 SLGSLTLPLSELLKEPDLTLDQPFPLDN  102 (105)
T ss_pred             ccEEEEEEHHHhhccccceeeeeEecCC
Confidence            999999999998654  46789999964

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.78  E-value=2.2e-18  Score=141.13  Aligned_cols=109  Identities=26%  Similarity=0.437  Sum_probs=96.8

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEec---CCCCEEEEEEEEc
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIYDD  335 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~---~~~~~L~v~v~d~  335 (390)
                      ...+.|+|+|++|++|+..+..+.+||||++++.+.+.+..+|++++++.||.|||+|.|.+..   .....|.++|||+
T Consensus        13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~   92 (125)
T cd08386          13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY   92 (125)
T ss_pred             CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence            4678999999999999999888999999999997655677899999999999999999997532   2456899999999


Q ss_pred             CCCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (390)
Q Consensus       336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (390)
                      +..+++++||++.+++.++..+...+.|+.|.
T Consensus        93 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          93 DRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             CCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence            99889999999999999998888899999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.78  E-value=2.2e-18  Score=141.15  Aligned_cols=108  Identities=20%  Similarity=0.434  Sum_probs=93.3

Q ss_pred             cceeEEEEEEeeecCCccccCC-CCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  333 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~  333 (390)
                      ...+.|.|+|++|++|+.++.. |.+||||++++.+..  ..++||++++++.||.|||+|.|.+...  ....|.+.||
T Consensus        12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~   91 (128)
T cd08392          12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVW   91 (128)
T ss_pred             CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence            4568999999999999998865 899999999998655  3477999999999999999999998653  4569999999


Q ss_pred             EcCCCCCCceeEEEEEEccccCC---CceeeEEEEc
Q 016385          334 DDEGIQSSELIGCAQVRLCELEP---GKVKDVWLKL  366 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v~l~~l~~---~~~~~~w~~L  366 (390)
                      |++.++++++||++.++|.++..   +.....||+|
T Consensus        92 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l  127 (128)
T cd08392          92 HSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL  127 (128)
T ss_pred             eCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence            99999999999999999999844   3466799987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.78  E-value=2.2e-18  Score=140.62  Aligned_cols=108  Identities=31%  Similarity=0.433  Sum_probs=96.4

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEE-Eec--CCCCEEEEEEEEc
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VED--ESTQHLVVRIYDD  335 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~-v~~--~~~~~L~v~v~d~  335 (390)
                      ...+.|.|+|++|++|+..+..+.+||||++.+.+...++++|+++++ .||.|||+|.|. +..  ..+..|.++|||+
T Consensus        13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~   91 (124)
T cd08389          13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGV   91 (124)
T ss_pred             CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence            466789999999999999988889999999998777677889999887 999999999998 543  2567899999999


Q ss_pred             CCCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (390)
Q Consensus       336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (390)
                      +.++++++||++.++|+++..+.....|++|+
T Consensus        92 ~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~  123 (124)
T cd08389          92 ERMRKERLIGEKVVPLSQLNLEGETTVWLTLE  123 (124)
T ss_pred             CCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence            99999999999999999998888899999986

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.78  E-value=1.6e-18  Score=140.19  Aligned_cols=106  Identities=25%  Similarity=0.471  Sum_probs=91.3

Q ss_pred             ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecC-CCCEEEEEEEEcC
Q 016385          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE  336 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~-~~~~L~v~v~d~d  336 (390)
                      ..|.|.|+|++|++|+.++ .|.+||||++++.+...  .++||++++++.||.|||+|.|.+... ....+.++|||++
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~   88 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL   88 (119)
T ss_pred             cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence            4578999999999999988 78999999999986543  366899999999999999999998643 2347889999998


Q ss_pred             CCC-CCceeEEEEEEccccCCCceeeEEEEc
Q 016385          337 GIQ-SSELIGCAQVRLCELEPGKVKDVWLKL  366 (390)
Q Consensus       337 ~~~-~d~~lG~~~v~l~~l~~~~~~~~w~~L  366 (390)
                      ... ++++||++.+++.++..+...+.||.|
T Consensus        89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            865 478999999999999878778999976

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.78  E-value=4.9e-18  Score=140.87  Aligned_cols=118  Identities=22%  Similarity=0.398  Sum_probs=97.8

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC---------CCCEEEEEEE
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------STQHLVVRIY  333 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~---------~~~~L~v~v~  333 (390)
                      .|+|+|.+|++|+.+|..|.+||||+++++   .++++|++++++.||.|||.|.|.+...         ....+.++||
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~   78 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFL---NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF   78 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEEC---CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence            589999999999999999999999999996   5678999999999999999999975432         1257999999


Q ss_pred             EcCCCCCCceeEEEEE-EccccC---CCceeeEEEEcccccccCCCCeeeeEEEEE--Eeec
Q 016385          334 DDEGIQSSELIGCAQV-RLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPPY  389 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v-~l~~l~---~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p~  389 (390)
                      |+|..++|++||++.+ ++..+.   .+.....|++|.+      .+...|+|.++  +.|.
T Consensus        79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~------~~~~~Geil~~~~~~~~  134 (135)
T cd04017          79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK------GGQSAGELLAAFELIEV  134 (135)
T ss_pred             eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec------CCCchhheeEEeEEEEe
Confidence            9999999999999986 443343   3467789999964      44578999998  7664

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.77  E-value=6.6e-18  Score=138.66  Aligned_cols=114  Identities=30%  Similarity=0.476  Sum_probs=98.3

Q ss_pred             EeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcCCCCCCceeE
Q 016385          268 LVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQSSELIG  345 (390)
Q Consensus       268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d~~~~d~~lG  345 (390)
                      |++|++|+.  ..|.+||||++++.   ...++|++++++.||.|||+|.|.+.+.  ..+.|.++|||++..++|++||
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~---~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG   76 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFR---GVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG   76 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEEC---CEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence            678999988  67899999999996   5578999999999999999999999764  5679999999999988999999


Q ss_pred             EEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE--EeecC
Q 016385          346 CAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPPYK  390 (390)
Q Consensus       346 ~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p~~  390 (390)
                      ++.++++++..+.....|++|....    .....|+|+++  |.|.+
T Consensus        77 ~~~~~l~~l~~~~~~~~~~~L~~~~----~~~~~~~l~l~~~~~~~~  119 (127)
T cd08373          77 SATVSLQDLVSEGLLEVTEPLLDSN----GRPTGATISLEVSYQPPD  119 (127)
T ss_pred             EEEEEhhHcccCCceEEEEeCcCCC----CCcccEEEEEEEEEeCCC
Confidence            9999999999888889999996421    33346899999  99864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.77  E-value=4.1e-18  Score=139.86  Aligned_cols=109  Identities=26%  Similarity=0.444  Sum_probs=95.6

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d  334 (390)
                      ...+.|+|+|++|++|+..+..+.+||||++++.+.+  ..+++|++++++.||.|||+|.|.+...  ....|.+.|||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~   92 (127)
T cd04030          13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN   92 (127)
T ss_pred             CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence            4568999999999999999988999999999997543  4578999999999999999999998543  45689999999


Q ss_pred             cCCC--CCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385          335 DEGI--QSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (390)
Q Consensus       335 ~d~~--~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (390)
                      ++..  +++++||++.+++.++..+...+.|++|.
T Consensus        93 ~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          93 SKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             CCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence            9875  68999999999999998888889999883

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.77  E-value=3.8e-18  Score=139.27  Aligned_cols=108  Identities=20%  Similarity=0.458  Sum_probs=94.5

Q ss_pred             cceeEEEEEEeeecCCcccc-CCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  333 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~  333 (390)
                      ...|.|+|+|++|++|+..+ ..+.+||||++++.+.+.  .+++|++++++.||.|||+|.|.+...  ....|.++||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~   90 (123)
T cd08521          11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            46789999999999999988 678999999999865433  468999999999999999999998653  3568999999


Q ss_pred             EcCCCCCCceeEEEEEEccccCCCceeeEEEEc
Q 016385          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL  366 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L  366 (390)
                      |++..+++++||++.++++++..+...+.|++|
T Consensus        91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            999988999999999999999777778999986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.77  E-value=6.9e-18  Score=137.73  Aligned_cols=109  Identities=25%  Similarity=0.376  Sum_probs=96.8

Q ss_pred             cceeEEEEEEeeecCCcccc-CCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEc
Q 016385          259 KPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  335 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~  335 (390)
                      ...+.|.|+|++|++|+..+ ..+.+||||++++.+.+.+.++|++++++.||.|||+|.|.+...  ....|.|+|||+
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~   90 (123)
T cd08390          11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence            56789999999999999988 678899999999976556678999999999999999999998653  345899999999


Q ss_pred             CCCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (390)
Q Consensus       336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (390)
                      +..+++++||++.++++++......+.|++|.
T Consensus        91 ~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~  122 (123)
T cd08390          91 DRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE  122 (123)
T ss_pred             CcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence            99888999999999999998888889999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.77  E-value=9.9e-18  Score=138.53  Aligned_cols=111  Identities=25%  Similarity=0.476  Sum_probs=96.0

Q ss_pred             eeEEEEEEeeecCCccccCC----------CCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEE
Q 016385          261 VGTLEVKLVQAKGLTNKDLI----------GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVV  330 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~----------g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v  330 (390)
                      .|.|+|+|++|++|...+..          +.+||||++.++  +.+..+|++++++.||.|||+|.|.+.  ....+.|
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~   78 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD--DTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL   78 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC--CEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence            58999999999999988752          578999999997  334578999999999999999999996  3468999


Q ss_pred             EEEEcCCCCCCceeEEEEEEccccCC--CceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          331 RIYDDEGIQSSELIGCAQVRLCELEP--GKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       331 ~v~d~d~~~~d~~lG~~~v~l~~l~~--~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      .|||++..++++++|++.++++++..  +...+.|++|.          ..|+|++.
T Consensus        79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~----------~~G~l~l~  125 (132)
T cd04014          79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE----------PQGKLHVK  125 (132)
T ss_pred             EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc----------CCcEEEEE
Confidence            99999988889999999999999876  56789999994          35888887

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.76  E-value=4.5e-18  Score=135.10  Aligned_cols=94  Identities=15%  Similarity=0.294  Sum_probs=82.1

Q ss_pred             eEEEEEEeeecCCccccCC----CCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC-CCCEEEEEEEEcC
Q 016385          262 GTLEVKLVQAKGLTNKDLI----GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE  336 (390)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~----g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~-~~~~L~v~v~d~d  336 (390)
                      |+|.|+|++|++|+..+..    +.+||||+++++   .+++||+++++++||.|||.|.|.+.+. ....|.++|||++
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~---~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d   77 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG---RRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD   77 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC---CEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence            7899999999999987642    358999999986   5678999999999999999999998754 3458999999999


Q ss_pred             CCCCCceeEEEEEEccccCCCc
Q 016385          337 GIQSSELIGCAQVRLCELEPGK  358 (390)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~  358 (390)
                      ..++|++||++.++|+++..+.
T Consensus        78 ~~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          78 KFSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             CCCCCcceEEEEEEHHHHHhhC
Confidence            9999999999999999986653

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.76  E-value=5.9e-18  Score=138.52  Aligned_cols=108  Identities=24%  Similarity=0.439  Sum_probs=91.3

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC---CCCEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIY  333 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~---~~~~L~v~v~  333 (390)
                      ...|.|+|+|++|++|...+..+.+||||++++.+.+  ..+++|++++++.||.|||+|.|.+...   ....|.++||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~   92 (125)
T cd04031          13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW   92 (125)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence            4568999999999999999888999999999997533  3577899999999999999999986432   4568999999


Q ss_pred             EcCCCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (390)
                      |++..+++++||++.+++++. .......|++|+
T Consensus        93 d~~~~~~~~~iG~~~i~l~~~-~~~~~~~W~~L~  125 (125)
T cd04031          93 DYDRDGENDFLGEVVIDLADA-LLDDEPHWYPLQ  125 (125)
T ss_pred             eCCCCCCCcEeeEEEEecccc-cccCCcceEECc
Confidence            999988999999999999983 233457899984

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.76  E-value=1.3e-17  Score=136.78  Aligned_cols=105  Identities=28%  Similarity=0.487  Sum_probs=91.3

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCc
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~  342 (390)
                      .++|+|++|++|+..+..+.+||||++.....+.+.++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            57899999999999988899999999987643345789999999999999999999998765679999999999988899


Q ss_pred             eeEEEEEEccccCC---CceeeEEEEcc
Q 016385          343 LIGCAQVRLCELEP---GKVKDVWLKLV  367 (390)
Q Consensus       343 ~lG~~~v~l~~l~~---~~~~~~w~~L~  367 (390)
                      +||++.+++.++..   +...+.|++|.
T Consensus        82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~  109 (126)
T cd04043          82 LCGRASLKLDPKRFGDDGLPREIWLDLD  109 (126)
T ss_pred             eEEEEEEecCHHHcCCCCCCceEEEEcC
Confidence            99999999987632   45678999995

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.76  E-value=1.8e-17  Score=135.92  Aligned_cols=114  Identities=32%  Similarity=0.648  Sum_probs=96.2

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC----
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI----  338 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~----  338 (390)
                      .|+|+|++|++|+..|..|.+||||+++++   ...++|++++++.||.|||+|.|.+..+ ...|.++|||+|..    
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~   77 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG---KTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR   77 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEEC---CEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence            689999999999999988999999999986   4578999999999999999999988655 45899999999852    


Q ss_pred             -------CCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          339 -------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       339 -------~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                             +++++||++.+++.++..  ..+.|+.|.+..   .....+|+|+++
T Consensus        78 ~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~---~~~~~~G~i~~~  126 (127)
T cd04027          78 LKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRT---DKSAVSGAIRLH  126 (127)
T ss_pred             cceeccccCCCcceEEEEEhHHccC--CCCeEEECccCC---CCCcEeEEEEEE
Confidence                   468999999999988753  357999998642   244579999885

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.76  E-value=7.2e-18  Score=141.54  Aligned_cols=103  Identities=39%  Similarity=0.712  Sum_probs=90.9

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--------------------------CceEeeeccCCCCCCee
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--------------------------EKTKKSKTINNDLNPIW  312 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--------------------------~~~~kT~v~~~~~nP~w  312 (390)
                      ++.+.|.|+|++|++|..+|..|.+||||++++.+..                          .+.++|+++++++||.|
T Consensus        25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W  104 (153)
T cd08676          25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW  104 (153)
T ss_pred             CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence            6899999999999999999999999999999986421                          13478999999999999


Q ss_pred             eeEEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEccccCCCceeeEEEEc
Q 016385          313 NEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL  366 (390)
Q Consensus       313 ~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L  366 (390)
                      ||+|.|.+.+...+.|.|+|||++    +++||++.++++++. +...+.|++|
T Consensus       105 nE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~-~~~~d~W~~L  153 (153)
T cd08676         105 NETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP-SCGLDSWFKL  153 (153)
T ss_pred             ccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence            999999998766789999999997    889999999999998 3457999986

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.75  E-value=5.7e-18  Score=135.34  Aligned_cols=101  Identities=27%  Similarity=0.472  Sum_probs=89.1

Q ss_pred             EEEEEeeecCCccccC-CCCCCcEEEEEEecCCCceEeeeccCCCCCCee-eeEEEEEEecC--CCCEEEEEEEEcCCCC
Q 016385          264 LEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIW-NEHFEFIVEDE--STQHLVVRIYDDEGIQ  339 (390)
Q Consensus       264 L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w-~e~f~f~v~~~--~~~~L~v~v~d~d~~~  339 (390)
                      |.|+|++|++|+.++. .+.+||||+++++   .++++|+++++++||.| ||+|.|.+...  .++.|.++|||++..+
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~---~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~   77 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS   77 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEEC---CeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence            5799999999998874 6889999999997   47889999999999999 99999998764  3468999999999999


Q ss_pred             CCceeEEEEEEccccCC---CceeeEEEEcc
Q 016385          340 SSELIGCAQVRLCELEP---GKVKDVWLKLV  367 (390)
Q Consensus       340 ~d~~lG~~~v~l~~l~~---~~~~~~w~~L~  367 (390)
                      +|++||++.+++.++..   +...+.||+|.
T Consensus        78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~  108 (110)
T cd08688          78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY  108 (110)
T ss_pred             CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence            99999999999999866   34578999985

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.75  E-value=7.4e-18  Score=137.96  Aligned_cols=115  Identities=27%  Similarity=0.482  Sum_probs=97.9

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccC-CCCCCeeeeEEEEEEecCC----CCEEEEEEEEcCC
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEG  337 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~~~nP~w~e~f~f~v~~~~----~~~L~v~v~d~d~  337 (390)
                      .|+|+|++|++|+..+..+.+||||++++.+  .+.++|++.. ++.||.|||.|.|.+.+..    ...|.++|||++.
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~--~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~   78 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP--SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP   78 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC--CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence            3789999999999988889999999999973  3567888874 6899999999999997763    5789999999998


Q ss_pred             CCCCceeEEEEEEccccCCCce-----eeEEEEcccccccCCCCeeeeEEEE
Q 016385          338 IQSSELIGCAQVRLCELEPGKV-----KDVWLKLVKDLDVQRDTKYRGQVRI  384 (390)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~~~~-----~~~w~~L~~~~~~~~~~~~~G~i~l  384 (390)
                      +++|++||++.+++.++..+..     ...|++|.+.     +++..|.|++
T Consensus        79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-----~g~~~G~~~~  125 (125)
T cd04051          79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-----SGKPQGVLNF  125 (125)
T ss_pred             CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-----CCCcCeEEeC
Confidence            8889999999999999875543     4789999753     5788899875

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.75  E-value=1.9e-17  Score=133.48  Aligned_cols=113  Identities=35%  Similarity=0.548  Sum_probs=98.4

Q ss_pred             EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCce
Q 016385          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (390)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~  343 (390)
                      |+|+|++|++|+..+..+.+||||++++.  +.+.++|+++.++.||.|||+|.|.+.+...+.+.+++||++..+++++
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~--~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~   78 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLN--GEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL   78 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEEC--CCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence            57899999999998888899999999986  2456899999999999999999999987667799999999999889999


Q ss_pred             eEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEE
Q 016385          344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVR  383 (390)
Q Consensus       344 lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~  383 (390)
                      ||++.+++.++..+...+.|++|.+.     ++...|.+.
T Consensus        79 iG~~~~~l~~l~~~~~~~~~~~L~~~-----g~~~~~~~~  113 (115)
T cd04040          79 LGSAYIDLSDLEPEETTELTLPLDGQ-----GGGKLGAVF  113 (115)
T ss_pred             eEEEEEEHHHcCCCCcEEEEEECcCC-----CCccCceEE
Confidence            99999999999888888999999753     445566654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.75  E-value=1.4e-17  Score=136.12  Aligned_cols=104  Identities=39%  Similarity=0.638  Sum_probs=93.2

Q ss_pred             eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCC-CCCCeeeeEEEEEEecC---CCCEEEEEEEEcCC
Q 016385          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG  337 (390)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-~~nP~w~e~f~f~v~~~---~~~~L~v~v~d~d~  337 (390)
                      |.|.|+|++|++|+..+..+.+||||++++.   .+.++|++.++ +.||.|||+|.|.+..+   ..+.|.|+|||++.
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   77 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR---TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN   77 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEEC---CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence            7899999999999998888999999999986   45678888774 89999999999999876   35689999999999


Q ss_pred             CCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      .++|++||++.+++.++..+...+.|+.|.+
T Consensus        78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p  108 (124)
T cd04049          78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVP  108 (124)
T ss_pred             CCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence            8899999999999999988778899999976

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.74  E-value=2.3e-17  Score=136.87  Aligned_cols=108  Identities=21%  Similarity=0.359  Sum_probs=93.8

Q ss_pred             EEEEEeeecCCccccCCCCCCcEEEEEEec-CCCceEeeeccCCCCCCeeeeEEEEEEecC---------------CCCE
Q 016385          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------------STQH  327 (390)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~---------------~~~~  327 (390)
                      |+|+|++|++|..+ ..+.+|||+++++.. ...+.++|++++++.||.|||+|.|.+...               ..+.
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999988 778999999999973 224678999999999999999999998765               4678


Q ss_pred             EEEEEEEcCCCCCCceeEEEEEEccccCCCceeeEEEEccccccc
Q 016385          328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDV  372 (390)
Q Consensus       328 L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~  372 (390)
                      +.++|||++..+++++||++.+++.++......+.|++|.+....
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~~  124 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPREAP  124 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcCCC
Confidence            999999999988899999999999998877778999999875433

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.73  E-value=2.1e-17  Score=140.87  Aligned_cols=110  Identities=21%  Similarity=0.373  Sum_probs=94.8

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEec---CCCCEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY  333 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~---~~~~~L~v~v~  333 (390)
                      .+.|.|.|+|++|++|+..+..+.+||||++++.+.+  ..+++|++++++.||.|||+|.|.+..   .....|.|+||
T Consensus        24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            5789999999999999999988999999999986432  457899999999999999999998532   23458999999


Q ss_pred             EcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      |++.+++|++||++.+++.++......+.|+.+..
T Consensus       104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020         104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             eCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            99999899999999999999876666788888854

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.73  E-value=3.6e-17  Score=131.38  Aligned_cols=99  Identities=22%  Similarity=0.371  Sum_probs=84.6

Q ss_pred             eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCC
Q 016385          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  341 (390)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d  341 (390)
                      |.|.|+|++|++|...+   ..||||++.++   .++.+|++.++ .||.|||+|.|.+.+... .|.++|||++.. .|
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g---~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~-~L~v~V~dkd~~-~D   72 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQ---NVKSTTIAVRG-SQPCWEQDFMFEINRLDL-GLVIELWNKGLI-WD   72 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEEC---CEEeEeeECCC-CCCceeeEEEEEEcCCCC-EEEEEEEeCCCc-CC
Confidence            68999999999997544   46899999997   56788998877 599999999999987644 599999999965 89


Q ss_pred             ceeEEEEEEccccCCCcee--eEEEEcccc
Q 016385          342 ELIGCAQVRLCELEPGKVK--DVWLKLVKD  369 (390)
Q Consensus       342 ~~lG~~~v~l~~l~~~~~~--~~w~~L~~~  369 (390)
                      |++|++.++|+++..+...  .+|++|.+.
T Consensus        73 D~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~  102 (127)
T cd08394          73 TLVGTVWIPLSTIRQSNEEGPGEWLTLDSE  102 (127)
T ss_pred             CceEEEEEEhHHcccCCCCCCCccEecChH
Confidence            9999999999998765544  799999864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.73  E-value=8e-18  Score=139.08  Aligned_cols=108  Identities=21%  Similarity=0.302  Sum_probs=92.2

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCc--eEeeeccCCCCCCeeeeEEEEEEec--CCCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~v~~~~~nP~w~e~f~f~v~~--~~~~~L~v~v~d  334 (390)
                      +..+.|.|+|++|++|+..+..|.+||||++++.+.+.+  ++||+++++++||.|||+|.|.+..  ..+..|.|+|||
T Consensus        12 ~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~   91 (136)
T cd08406          12 PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAE   91 (136)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEe
Confidence            456789999999999999988899999999999765443  6689999999999999999999865  356789999999


Q ss_pred             cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      +|..+++++||++.+...  ..|...++|..+..
T Consensus        92 ~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~  123 (136)
T cd08406          92 STEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLA  123 (136)
T ss_pred             CCCCCCCCeeEEEEECCC--CCChhHHHHHHHHH
Confidence            999999999999999765  35666778877764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>PLN03008 Phospholipase D delta

Probab=99.72  E-value=5.5e-17  Score=164.43  Aligned_cols=126  Identities=23%  Similarity=0.514  Sum_probs=106.7

Q ss_pred             cceeEEEEEEeeecCCccccC------------------------------------------CCCCCcEEEEEEecCCC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDL------------------------------------------IGKSDPYAVLFVRPLPE  296 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~  296 (390)
                      .-.|.|.++|.+|++|+++|.                                          .+++||||++.++  +.
T Consensus        11 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg--~~   88 (868)
T PLN03008         11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP--QA   88 (868)
T ss_pred             EeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEEC--Cc
Confidence            356889999999998875331                                          2467999999996  34


Q ss_pred             ceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCC
Q 016385          297 KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDT  376 (390)
Q Consensus       297 ~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~  376 (390)
                      ++.||++++++.||+|||+|.|.+.++. ..|.|+|||+|.++ +++||++.+|++++..|...+.|++|.+...  +..
T Consensus        89 rv~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~--kp~  164 (868)
T PLN03008         89 TLARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG--KPP  164 (868)
T ss_pred             ceeeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC--CCC
Confidence            5779999999999999999999998874 48999999999986 6899999999999999999999999987543  355


Q ss_pred             eeeeEEEEE--EeecC
Q 016385          377 KYRGQVRIK--YPPYK  390 (390)
Q Consensus       377 ~~~G~i~l~--y~p~~  390 (390)
                      +.+|+|+++  |+|++
T Consensus       165 k~~~kl~v~lqf~pv~  180 (868)
T PLN03008        165 KAETAIFIDMKFTPFD  180 (868)
T ss_pred             CCCcEEEEEEEEEEcc
Confidence            667899999  99985

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.72  E-value=7.4e-17  Score=130.79  Aligned_cols=103  Identities=25%  Similarity=0.425  Sum_probs=91.5

Q ss_pred             eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCC
Q 016385          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  341 (390)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d  341 (390)
                      |.|+|+|++|++|+..+..+.+||||+++++  +...++|++++++.||.|||+|.|.+.+. .+.|.|+|||++..++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d   77 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN--GIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD   77 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEEC--CEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence            7899999999999999888999999999986  23568899999999999999999988765 46999999999999999


Q ss_pred             ceeEEEEEEccccCCCceeeEEEEccc
Q 016385          342 ELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       342 ~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      ++||++.+++.++..+ ..+.||.+..
T Consensus        78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~  103 (120)
T cd04045          78 RSLGSVEINVSDLIKK-NEDGKYVEYD  103 (120)
T ss_pred             CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence            9999999999999876 5678888865

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.72  E-value=2.7e-16  Score=129.82  Aligned_cols=117  Identities=20%  Similarity=0.372  Sum_probs=95.8

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEecCC----------CceEeeeccCCCCCCee-eeEEEEEEecCCCCEEEEE
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----------EKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVR  331 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----------~~~~kT~v~~~~~nP~w-~e~f~f~v~~~~~~~L~v~  331 (390)
                      +..|++++|++|+ ++..|++|||+++++.+.+          .+.++|+++++++||.| ||+|.|.+.  .++.|.++
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence            4678999999998 7778999999999997543          24789999999999999 999999985  34689999


Q ss_pred             EEEcCCCCC---CceeEEEEEEccccCCC---ceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          332 IYDDEGIQS---SELIGCAQVRLCELEPG---KVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       332 v~d~d~~~~---d~~lG~~~v~l~~l~~~---~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      |||++..++   +++||++.+++.++..+   .....|++|.+..   ..+..+|+|.+.
T Consensus        79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~---~~s~v~G~~~l~  135 (137)
T cd08691          79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT---PTDHVSGQLTFR  135 (137)
T ss_pred             EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC---CCCcEEEEEEEE
Confidence            999875443   79999999999998654   3467899998643   256778999875

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.72  E-value=1.1e-17  Score=138.12  Aligned_cols=108  Identities=20%  Similarity=0.383  Sum_probs=91.6

Q ss_pred             cceeEEEEEEeeecCCccccC--CCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v  332 (390)
                      +..|.|.|+|++|+||...|.  .+.+||||++++.+.+.  .++||+++++++||+|||.|.|.+.+.  .+..|.++|
T Consensus        12 ~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V   91 (138)
T cd08407          12 PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEV   91 (138)
T ss_pred             CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEE
Confidence            567899999999999999873  35599999999986543  367899999999999999999998753  456899999


Q ss_pred             EEcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       333 ~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      ||+|.++++++||++.+++..  .|+..++|..+..
T Consensus        92 ~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~  125 (138)
T cd08407          92 LNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLD  125 (138)
T ss_pred             EeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHh
Confidence            999999999999999999974  5667788877754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.72  E-value=2.1e-16  Score=132.51  Aligned_cols=116  Identities=25%  Similarity=0.378  Sum_probs=90.9

Q ss_pred             EEEEeeecC--CccccCCCCCCcEEEEEEe-c-CCCceEeeeccCCCCCCeeeeEEEEEEecC--------CCCEEEEEE
Q 016385          265 EVKLVQAKG--LTNKDLIGKSDPYAVLFVR-P-LPEKTKKSKTINNDLNPIWNEHFEFIVEDE--------STQHLVVRI  332 (390)
Q Consensus       265 ~V~v~~a~~--L~~~d~~g~~dpyv~v~~~-~-~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~--------~~~~L~v~v  332 (390)
                      .++|..|++  ++..+..+.+||||++++. + .+.++.||+++++|+||.|||+|.|.+...        ..+.|.++|
T Consensus         5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V   84 (155)
T cd08690           5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV   84 (155)
T ss_pred             EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence            345555555  7777777889999999973 2 345689999999999999999999999643        245799999


Q ss_pred             EEcCCC-CCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          333 YDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       333 ~d~d~~-~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      ||++.+ ++|++||++.++|+.+........|++|...     .....|+|+++
T Consensus        85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-----~k~~Gg~l~v~  133 (155)
T cd08690          85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-----RKATGGKLEVK  133 (155)
T ss_pred             EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-----CCCcCCEEEEE
Confidence            999986 5799999999999999877777789998742     22344666665

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.71  E-value=2.3e-17  Score=136.53  Aligned_cols=108  Identities=25%  Similarity=0.453  Sum_probs=93.3

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d  334 (390)
                      ...|.|.|+|++|++|+..|..|.+||||++++.+..  ..+++|++++++.||.|||+|.|.+...  ....|.|+|||
T Consensus        10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d   89 (133)
T cd08384          10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWD   89 (133)
T ss_pred             CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence            4678999999999999999988999999999997543  3467999999999999999999998653  45689999999


Q ss_pred             cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      ++..+++++||++.+++..  .++..++|+++..
T Consensus        90 ~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~  121 (133)
T cd08384          90 KDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK  121 (133)
T ss_pred             CCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence            9998889999999999975  4556789998865

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.71  E-value=3.2e-17  Score=136.17  Aligned_cols=108  Identities=23%  Similarity=0.377  Sum_probs=92.2

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d  334 (390)
                      ...+.|.|+|++|++|+..|..|.+||||++++.+.+.  ...+|++++++.||.|||+|.|.+...  ....|.|+|||
T Consensus        12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d   91 (136)
T cd08404          12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence            45778999999999999999889999999999864432  357899999999999999999998643  34578999999


Q ss_pred             cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      ++.++++++||++.+++..  .+...++|+++..
T Consensus        92 ~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~  123 (136)
T cd08404          92 SDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCN  123 (136)
T ss_pred             CCCCCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence            9999999999999999987  4566788988854

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.71  E-value=9.8e-17  Score=130.58  Aligned_cols=94  Identities=26%  Similarity=0.416  Sum_probs=82.4

Q ss_pred             ccceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEec-CCCCEEEEEEEEcC
Q 016385          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-ESTQHLVVRIYDDE  336 (390)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~-~~~~~L~v~v~d~d  336 (390)
                      .+..|.|+|+|++|++|+. +..+.+|||++++++   +++++|++++++.||.|||+|.|.... ...+.|.|+|||++
T Consensus        24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~---~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d   99 (127)
T cd04032          24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFG---GQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD   99 (127)
T ss_pred             cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC---CccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence            3678999999999999984 667889999999986   458899999999999999999997533 35679999999999


Q ss_pred             CCCCCceeEEEEEEccccC
Q 016385          337 GIQSSELIGCAQVRLCELE  355 (390)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~  355 (390)
                      ..++|++||++.+++....
T Consensus       100 ~~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032         100 NGWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCCCCeeEEEEEEecCCc
Confidence            9999999999999998554

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.70  E-value=1.2e-16  Score=133.43  Aligned_cols=91  Identities=30%  Similarity=0.600  Sum_probs=83.4

Q ss_pred             eeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCC
Q 016385          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~  340 (390)
                      .|.|+|+|++|++|+..+. +.+||||+++++   .+.++|++++++.||.|||+|.|.+.++ .+.+.++|||++.+++
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g---~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~   75 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG---NQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK   75 (145)
T ss_pred             CeEEEEEEEeeECCCCCCC-CCcCcEEEEEEC---CEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence            3899999999999998887 889999999996   6789999999999999999999999877 6799999999999999


Q ss_pred             CceeEEEEEEccccCC
Q 016385          341 SELIGCAQVRLCELEP  356 (390)
Q Consensus       341 d~~lG~~~v~l~~l~~  356 (390)
                      |++||++.+++.++..
T Consensus        76 dd~iG~a~i~l~~l~~   91 (145)
T cd04038          76 DDSMGEAEIDLEPLVE   91 (145)
T ss_pred             CCEEEEEEEEHHHhhh
Confidence            9999999999988743

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.70  E-value=3.7e-16  Score=129.65  Aligned_cols=124  Identities=20%  Similarity=0.359  Sum_probs=99.1

Q ss_pred             ccceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCC
Q 016385          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (390)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~  337 (390)
                      .+....|.|.|++|++|+.++     +|||.+.++  +....||+++.++.||.|+|.|+|..... -..+.|.||+.+.
T Consensus         7 ~R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld--~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~   78 (146)
T cd04013           7 RRTENSLKLWIIEAKGLPPKK-----RYYCELCLD--KTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESD   78 (146)
T ss_pred             eEEEEEEEEEEEEccCCCCcC-----CceEEEEEC--CEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccC
Confidence            356778999999999998754     799999997  34567999999999999999999976554 3579999987653


Q ss_pred             C----CCCceeEEEEEEccccCCCceeeEEEEcccccccC-----CCCeeeeEEEEE--Eeec
Q 016385          338 I----QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ-----RDTKYRGQVRIK--YPPY  389 (390)
Q Consensus       338 ~----~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~-----~~~~~~G~i~l~--y~p~  389 (390)
                      .    .++++||.+.++++++..+...+.||+|.......     ......|+|+++  |.+.
T Consensus        79 ~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~  141 (146)
T cd04013          79 KKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST  141 (146)
T ss_pred             ccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence            2    25789999999999999999999999998743221     012344789998  9875

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.70  E-value=1.1e-16  Score=128.02  Aligned_cols=100  Identities=26%  Similarity=0.498  Sum_probs=85.3

Q ss_pred             CCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEccccCC-C
Q 016385          279 LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-G  357 (390)
Q Consensus       279 ~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~-~  357 (390)
                      .+|.+||||+++++  +...++|++++++.||.|||.|.|.+.+...+.|.|+|||++.. ++++||++.++|+++.. +
T Consensus         9 ~~G~~dPYv~v~v~--~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~   85 (111)
T cd04052           9 KTGLLSPYAELYLN--GKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT   85 (111)
T ss_pred             cCCCCCceEEEEEC--CEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence            46889999999996  23467999999999999999999999877677899999999998 89999999999999854 4


Q ss_pred             ceeeEEEEcccccccCCCCeeeeEEEEE--Eeec
Q 016385          358 KVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPPY  389 (390)
Q Consensus       358 ~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p~  389 (390)
                      ...+.|++|..        ...|+|+++  |.|.
T Consensus        86 ~~~~~w~~L~~--------~~~G~i~~~~~~~p~  111 (111)
T cd04052          86 SVGQQWFPLSG--------NGQGRIRISALWKPV  111 (111)
T ss_pred             hccceeEECCC--------CCCCEEEEEEEEecC
Confidence            45689999952        457999999  9884

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.69  E-value=2e-16  Score=132.62  Aligned_cols=103  Identities=20%  Similarity=0.287  Sum_probs=86.6

Q ss_pred             EEEEEEeeecCCccccCCC--------------CCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC-CCCE
Q 016385          263 TLEVKLVQAKGLTNKDLIG--------------KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQH  327 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g--------------~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~-~~~~  327 (390)
                      .|.|+|++|++|+.+|..+              .+||||++.++   ++..+|++++++.||.|||+|.|.+..+ ..+.
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~---g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~   77 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---GQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCER   77 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC---CEeeecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence            3789999999999988543              68999999997   4567999999999999999999997644 3569


Q ss_pred             EEEEEEEcCCCCCCceeEEEEEEccccCCCce-------eeEEEEccc
Q 016385          328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKV-------KDVWLKLVK  368 (390)
Q Consensus       328 L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~~-------~~~w~~L~~  368 (390)
                      +.++|||+|..++|++||++.+++.++.....       ...|+.+..
T Consensus        78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg  125 (151)
T cd04018          78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG  125 (151)
T ss_pred             EEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence            99999999999899999999999998865432       257877754

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.69  E-value=1.2e-16  Score=130.47  Aligned_cols=92  Identities=28%  Similarity=0.398  Sum_probs=81.0

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCc
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~  342 (390)
                      +|+|.|++|++|++.|..|.+||||+++++.. ....+|++++++.||.|||+|.|.+..+..+.|.++|||++..++|+
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd   79 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK-KINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD   79 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe-eccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence            47899999999999998899999999999732 23467888889999999999999987777789999999999998999


Q ss_pred             eeEEEEEEccccC
Q 016385          343 LIGCAQVRLCELE  355 (390)
Q Consensus       343 ~lG~~~v~l~~l~  355 (390)
                      +||++.+++++..
T Consensus        80 ~iG~~~i~l~~~~   92 (124)
T cd04037          80 LIGETVIDLEDRF   92 (124)
T ss_pred             eeEEEEEeecccc
Confidence            9999999998754

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.69  E-value=2.3e-16  Score=126.27  Aligned_cols=98  Identities=22%  Similarity=0.396  Sum_probs=85.2

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCC----CCEEEEEEEEcCCC
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEGI  338 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~----~~~L~v~v~d~d~~  338 (390)
                      .|+|+|++|++|.    .+.+||||+++++   +++++|++++++.||.|||+|.|.+..+.    +..|.++|||++..
T Consensus         5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~   77 (111)
T cd04011           5 QVRVRVIEARQLV----GGNIDPVVKVEVG---GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL   77 (111)
T ss_pred             EEEEEEEEcccCC----CCCCCCEEEEEEC---CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence            6899999999998    4789999999998   56788999999999999999999986542    46899999999998


Q ss_pred             CCCceeEEEEEEccccCCC---ceeeEEEEcc
Q 016385          339 QSSELIGCAQVRLCELEPG---KVKDVWLKLV  367 (390)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~~---~~~~~w~~L~  367 (390)
                      ++|++||++.++++++..+   .....|++|.
T Consensus        78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~  109 (111)
T cd04011          78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT  109 (111)
T ss_pred             ccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence            8899999999999998655   3457899985

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.68  E-value=7e-17  Score=133.82  Aligned_cols=108  Identities=29%  Similarity=0.480  Sum_probs=91.2

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d  334 (390)
                      ...|.|+|+|++|++|++.+..|.+||||++++.+.+  ...++|++++++.||.|||+|.|.+...  ....|.|+|||
T Consensus        11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d   90 (134)
T cd08403          11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD   90 (134)
T ss_pred             CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence            5678999999999999999989999999999986433  2467899999999999999999987543  33579999999


Q ss_pred             cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      ++..+++++||++.+++.  ..+...++|+++..
T Consensus        91 ~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~  122 (134)
T cd08403          91 YDRVGHNELIGVCRVGPN--ADGQGREHWNEMLA  122 (134)
T ss_pred             CCCCCCCceeEEEEECCC--CCCchHHHHHHHHH
Confidence            999999999999999986  44555678888764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.68  E-value=3.4e-16  Score=129.43  Aligned_cols=98  Identities=27%  Similarity=0.380  Sum_probs=85.9

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC----CceEeeeccCCCCCCeeeeEEEEEEecC----CCCEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVV  330 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~~~~~nP~w~e~f~f~v~~~----~~~~L~v  330 (390)
                      ...+.|+|+|++|++|+..+..+.+||||++++.+..    ...++|+++++++||.|||+|.|.+...    ....|.+
T Consensus        13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~   92 (133)
T cd04009          13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF   92 (133)
T ss_pred             CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence            4567899999999999998888999999999987433    3578999999999999999999998653    3568999


Q ss_pred             EEEEcCCCCCCceeEEEEEEccccCC
Q 016385          331 RIYDDEGIQSSELIGCAQVRLCELEP  356 (390)
Q Consensus       331 ~v~d~d~~~~d~~lG~~~v~l~~l~~  356 (390)
                      +|||++..++|++||++.++++++..
T Consensus        93 ~V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          93 TVKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             EEEecCCCCCCcEeEEEEEeHHHCCc
Confidence            99999999889999999999999864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=2.9e-16  Score=153.03  Aligned_cols=129  Identities=27%  Similarity=0.426  Sum_probs=111.4

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEec--CCCCEEEEEEEEcC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYDDE  336 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~--~~~~~L~v~v~d~d  336 (390)
                      .....|.|+|++|++|+.+|..|.+||||++++.++...+.+|++.++++||.|||+|.|.+..  ...+.|.+.|||+|
T Consensus       164 ~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d  243 (421)
T KOG1028|consen  164 FELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFD  243 (421)
T ss_pred             ccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence            5677899999999999999966789999999999888889999999999999999999999654  36789999999999


Q ss_pred             CCCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE--Eeec
Q 016385          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPPY  389 (390)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p~  389 (390)
                      .+++|+++|++.++|.++........|.++.......  ....|+|.++  |.|.
T Consensus       244 rfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~--~~~~gel~~sL~Y~p~  296 (421)
T KOG1028|consen  244 RFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS--EELAGELLLSLCYLPT  296 (421)
T ss_pred             CcccccEEEEEEecCccccccccceeeeccccccCCc--ccccceEEEEEEeecC
Confidence            9999999999999999887777788999998753222  2222899998  9885

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.68  E-value=3.2e-16  Score=130.15  Aligned_cols=108  Identities=23%  Similarity=0.420  Sum_probs=91.4

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEec--CCCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~--~~~~~L~v~v~d  334 (390)
                      ...|.|.|+|++|++|+..+..|.+||||++++.+.+  ...++|++++++.||.|||+|.|.+..  .....|.|+|||
T Consensus        12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d   91 (136)
T cd08405          12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence            4678999999999999998888999999999985432  346789999999999999999998753  245689999999


Q ss_pred             cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      ++..+++++||++.+++.+.  +...++|+++..
T Consensus        92 ~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~  123 (136)
T cd08405          92 KDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLS  123 (136)
T ss_pred             CCCCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence            99999999999999999875  555678877764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.68  E-value=6e-16  Score=128.45  Aligned_cols=109  Identities=19%  Similarity=0.323  Sum_probs=91.5

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC---ceEeeeccCCCCCCeeeeEEEEEEec--CCCCEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIY  333 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~v~~~~~nP~w~e~f~f~v~~--~~~~~L~v~v~  333 (390)
                      ...|.|.|+|++|+||+..+..|.+||||++++.+..+   .++||++++++.||.|||+|.|.+..  ..+..|.|+||
T Consensus        12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~   91 (138)
T cd08408          12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVY   91 (138)
T ss_pred             CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEE
Confidence            56789999999999999999889999999999976433   25689999999999999999999874  35669999999


Q ss_pred             EcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      |++..+++++||++.+++.... ....++|..+..
T Consensus        92 ~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~  125 (138)
T cd08408          92 NKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKE  125 (138)
T ss_pred             ECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHh
Confidence            9999999999999999886432 124568888754

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.68  E-value=3.9e-16  Score=128.83  Aligned_cols=106  Identities=34%  Similarity=0.570  Sum_probs=93.0

Q ss_pred             eEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC-CCCEEEEEEEEcCCC
Q 016385          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDEGI  338 (390)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~-~~~~L~v~v~d~d~~  338 (390)
                      |.|+|+|++|++|+..+..+.+||||.+.+.+.+  ...++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            8899999999999998888899999999997432  3578999999999999999999998654 356899999999988


Q ss_pred             CCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          339 QSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      +++++||++.+++.++... ..+.|++|..
T Consensus        93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~  121 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLN  121 (131)
T ss_pred             CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence            8899999999999998754 6789999965

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.68  E-value=3.2e-16  Score=127.24  Aligned_cols=101  Identities=26%  Similarity=0.428  Sum_probs=87.8

Q ss_pred             EeeecCCccccCCCCCCcEEEEEEecCC----CceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCC----CC
Q 016385          268 LVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG----IQ  339 (390)
Q Consensus       268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~----~~  339 (390)
                      .++|++|++.+..|.+||||++++.+..    ...++|++++++.||.|||+|.|.+.....+.|.++|||++.    .+
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~   85 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS   85 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence            3789999999988999999999997543    135899999999999999999998765556789999999997    78


Q ss_pred             CCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          340 SSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       340 ~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      +|++||++.+++.++..+.....|++|..
T Consensus        86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~~  114 (120)
T cd04048          86 DHDFLGEAECTLGEIVSSPGQKLTLPLKG  114 (120)
T ss_pred             CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence            99999999999999988877888999843

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.68  E-value=9.1e-17  Score=133.49  Aligned_cols=108  Identities=31%  Similarity=0.465  Sum_probs=91.6

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d  334 (390)
                      +..|.|.|+|++|++|+..+..|.+||||++++.+.+.  ..++|++++++.||.|||+|.|.+...  ....|.++|||
T Consensus        12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d   91 (136)
T cd08402          12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence            56789999999999999999889999999999864332  467899999999999999999998643  23479999999


Q ss_pred             cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      ++.+++|++||++.+++..  .+...++|+++..
T Consensus        92 ~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~  123 (136)
T cd08402          92 YDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLA  123 (136)
T ss_pred             CCCCCCCceeEEEEECCcc--CChHHHHHHHHHh
Confidence            9999999999999999975  3556678888765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.67  E-value=1e-16  Score=133.11  Aligned_cols=109  Identities=24%  Similarity=0.410  Sum_probs=92.9

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEec--CCCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~--~~~~~L~v~v~d  334 (390)
                      ...+.|.|+|++|++|...+ .+.+||||++++.+.+.  .+++|++++++.||.|||+|.|.+..  .....|.++|||
T Consensus        12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~   90 (137)
T cd08409          12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQ   90 (137)
T ss_pred             CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence            45688999999999999888 78899999999875433  36789999999999999999999863  345689999999


Q ss_pred             cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      ++..+++++||++.++......+...++|..+..
T Consensus        91 ~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~  124 (137)
T cd08409          91 SGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS  124 (137)
T ss_pred             CCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence            9998999999999999766666777788888765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.67  E-value=2.8e-16  Score=128.10  Aligned_cols=110  Identities=10%  Similarity=0.230  Sum_probs=89.3

Q ss_pred             ccceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCC-CCeeeeEEEEEEecCC-CCEEEEEEE
Q 016385          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDL-NPIWNEHFEFIVEDES-TQHLVVRIY  333 (390)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~-nP~w~e~f~f~v~~~~-~~~L~v~v~  333 (390)
                      .+..|+|+|+|++|++|++.+..+.+||||++++...++  .++||++++++. ||.|||+|.|.+.... +-.|.++||
T Consensus        10 ~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~   89 (135)
T cd08692          10 QAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLY   89 (135)
T ss_pred             cCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEE
Confidence            367889999999999999876566779999999875443  377899999995 6999999999997542 346788999


Q ss_pred             EcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      |++..+++++||++.++.++. .+...++|.++..
T Consensus        90 d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~  123 (135)
T cd08692          90 SRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIA  123 (135)
T ss_pred             eCCCCcCCceEEEEEECCccC-CchhhhhHHHHHh
Confidence            999888999999999999763 3445688977754

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.67  E-value=1.6e-15  Score=123.91  Aligned_cols=116  Identities=24%  Similarity=0.426  Sum_probs=93.0

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCc
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~  342 (390)
                      .|.|++.+|+ |...+..+.+||||+++++.  ...++|++++++.||.|||+|.|.+.  ..+.|.++|||++..++|+
T Consensus         3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~--~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~~~~~~   77 (125)
T cd04021           3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDG--QPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHTLKADV   77 (125)
T ss_pred             eEEEEEEeeE-CCCCCcCCCCCeEEEEEECC--cccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCCCCCCc
Confidence            6899999998 55555578899999999962  24789999999999999999999985  3568999999999998999


Q ss_pred             eeEEEEEEccccCCC---ce--eeEEEEcccccccCCCCeeeeEEEEE
Q 016385          343 LIGCAQVRLCELEPG---KV--KDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       343 ~lG~~~v~l~~l~~~---~~--~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      +||++.+++.++...   ..  ...|+++.+..  ..++...|+|+++
T Consensus        78 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~~~~  123 (125)
T cd04021          78 LLGEASLDLSDILKNHNGKLENVKLTLNLSSEN--KGSSVKVGELTVI  123 (125)
T ss_pred             EEEEEEEEHHHhHhhcCCCccceEEEEEEEccC--CCcceeeeeEEEE
Confidence            999999999998543   22  23588887532  1145778999875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.66  E-value=9.9e-16  Score=126.95  Aligned_cols=109  Identities=26%  Similarity=0.442  Sum_probs=88.4

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d  334 (390)
                      ...|.|+|+|++|++|+..|..|.+||||++++.+.+  .++++|++++++.||.|||+|.|.+...  ....|.|+|||
T Consensus        11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d   90 (135)
T cd08410          11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG   90 (135)
T ss_pred             CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence            4568999999999999999988999999999985432  2467899999999999999999998543  34479999999


Q ss_pred             cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      ++..+++++||++.+...... +...++|..|..
T Consensus        91 ~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~  123 (135)
T cd08410          91 HNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLN  123 (135)
T ss_pred             CCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHh
Confidence            999999999999886653322 223578888765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.65  E-value=1.6e-15  Score=123.79  Aligned_cols=107  Identities=25%  Similarity=0.428  Sum_probs=90.5

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEec---CCCCEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY  333 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~---~~~~~L~v~v~  333 (390)
                      ...+.|+|+|++|++|++.+..+.+||||++++.+..  ...++|++++++.||.|||+|.|....   .....+.+++|
T Consensus        12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~   91 (123)
T cd04035          12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL   91 (123)
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence            4567899999999999998888899999999986432  357899999999999999999986322   23568999999


Q ss_pred             EcCCCCCCceeEEEEEEccccCCCceeeEEEEc
Q 016385          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL  366 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L  366 (390)
                      |++.. ++++||++.++++++..++.++.|+.|
T Consensus        92 d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~  123 (123)
T cd04035          92 DEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL  123 (123)
T ss_pred             EcCCc-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence            99988 899999999999999988888777653

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.64  E-value=3.6e-16  Score=129.51  Aligned_cols=107  Identities=28%  Similarity=0.438  Sum_probs=93.3

Q ss_pred             ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecCC--CCEEEEEEEEc
Q 016385          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYDD  335 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~~--~~~L~v~v~d~  335 (390)
                      ..|.|.|+|++|++|+..+..+.+||||++++.+.+.  ..++|++++++.||.|||+|.|.+....  ...|.|+|||+
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~   91 (134)
T cd00276          12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK   91 (134)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence            4579999999999999988888999999999975432  3678999999999999999999987542  57899999999


Q ss_pred             CCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      +..+++++||++.+++++  .+...++|++|..
T Consensus        92 ~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~  122 (134)
T cd00276          92 DSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA  122 (134)
T ss_pred             CCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence            988889999999999998  5667889999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.64  E-value=3.9e-15  Score=120.22  Aligned_cols=111  Identities=31%  Similarity=0.528  Sum_probs=86.4

Q ss_pred             EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCC--CCEEEEEEEEcCCCCCC
Q 016385          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYDDEGIQSS  341 (390)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~--~~~L~v~v~d~d~~~~d  341 (390)
                      |+|+|++|++|+..   +.+||||+++++  +.+.++|+++++ .||.|||+|.|.+.+.+  ...+.+.+||.+...++
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~--~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~   75 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLD--QVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD   75 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEEC--CEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence            78999999999876   789999999997  234578999988 99999999999987642  34678888888766556


Q ss_pred             ceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       342 ~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      ..+|.  +++..+..+...+.|++|.+..   ......|+|+++
T Consensus        76 ~~~g~--v~l~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~  114 (117)
T cd08383          76 IVIGK--VALSKLDLGQGKDEWFPLTPVD---PDSEVQGSVRLR  114 (117)
T ss_pred             eEEEE--EEecCcCCCCcceeEEECccCC---CCCCcCceEEEE
Confidence            56665  5555555577789999997642   134578999987

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.63  E-value=1.4e-16  Score=148.22  Aligned_cols=109  Identities=33%  Similarity=0.578  Sum_probs=95.5

Q ss_pred             ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC-CCCEEEEEEEEcC
Q 016385          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE  336 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~-~~~~L~v~v~d~d  336 (390)
                      ....|+|+|.+|+||.++|.+|.||||+++.+-+++  ..+++|++++.++||+|||+|.|.+... .+..|.++|||||
T Consensus       178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD  257 (683)
T KOG0696|consen  178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD  257 (683)
T ss_pred             cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence            456789999999999999999999999999997654  3478899999999999999999998754 4568999999999


Q ss_pred             CCCCCceeEEEEEEccccCCCceeeEEEEcccc
Q 016385          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (390)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~  369 (390)
                      ..+++||+|...+.+++|... ..+.|+.|..+
T Consensus       258 rTsRNDFMGslSFgisEl~K~-p~~GWyKlLsq  289 (683)
T KOG0696|consen  258 RTSRNDFMGSLSFGISELQKA-PVDGWYKLLSQ  289 (683)
T ss_pred             ccccccccceecccHHHHhhc-chhhHHHHhhh
Confidence            999999999999999998754 46789998764

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.61  E-value=4.3e-15  Score=117.85  Aligned_cols=82  Identities=28%  Similarity=0.505  Sum_probs=70.6

Q ss_pred             EEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEc------
Q 016385          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD------  335 (390)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~------  335 (390)
                      |.|+|.+|++|+     +.+||||++++.+.+  ....+|+++++|+||.|||+|+|.+.  ..+.|++.|||+      
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~   73 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK   73 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence            579999999996     569999999997543  35789999999999999999999986  367999999998      


Q ss_pred             -CCCCCCceeEEEEEEcc
Q 016385          336 -EGIQSSELIGCAQVRLC  352 (390)
Q Consensus       336 -d~~~~d~~lG~~~v~l~  352 (390)
                       |..++|+.+|++.+.|+
T Consensus        74 ~d~~~~d~~~G~g~i~Ld   91 (118)
T cd08686          74 LDGEGTDAIMGKGQIQLD   91 (118)
T ss_pred             ccccCcccEEEEEEEEEC
Confidence             45678999999888874

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.60  E-value=2.3e-14  Score=117.67  Aligned_cols=116  Identities=26%  Similarity=0.413  Sum_probs=93.4

Q ss_pred             EEEEEEeeecCCcccc--CCCCCCcEEEEEEecCC---CceEeeeccCCCC-CCeeeeEEEEEEecCCCCEEEEEEEEcC
Q 016385          263 TLEVKLVQAKGLTNKD--LIGKSDPYAVLFVRPLP---EKTKKSKTINNDL-NPIWNEHFEFIVEDESTQHLVVRIYDDE  336 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~~~~---~~~~kT~v~~~~~-nP~w~e~f~f~v~~~~~~~L~v~v~d~d  336 (390)
                      .|+|+|++|++|+..+  ..+..||||++++...+   ...++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            6899999999999887  57889999999986332   4578899887765 9999999999998776668999999999


Q ss_pred             CCCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      .. ++++||++.++++++..|   ..|++|....   ......|.|.++
T Consensus        83 ~~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~---~~~~~~~~l~v~  124 (128)
T cd00275          83 SG-DDDFLGQACLPLDSLRQG---YRHVPLLDSK---GEPLELSTLFVH  124 (128)
T ss_pred             CC-CCcEeEEEEEEhHHhcCc---eEEEEecCCC---CCCCcceeEEEE
Confidence            87 899999999999999655   3577886421   122455787766

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.58  E-value=1.8e-14  Score=115.04  Aligned_cols=91  Identities=26%  Similarity=0.440  Sum_probs=76.6

Q ss_pred             EeeecCCccccCCCCCCcEEEEEEecCC---CceEeeeccCCCCCCeeeeEEEEEEecC----CCCEEEEEEEEcCCCCC
Q 016385          268 LVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVVRIYDDEGIQS  340 (390)
Q Consensus       268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~v~~~~~nP~w~e~f~f~v~~~----~~~~L~v~v~d~d~~~~  340 (390)
                      .++|++|+..|..|.+|||+++++.+.+   ...++|+++++++||.|| +|.|.+.+.    ..+.|.++|||++..++
T Consensus         6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~   84 (110)
T cd04047           6 QFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGK   84 (110)
T ss_pred             EEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCC
Confidence            4689999999999999999999987432   236899999999999999 588875432    25799999999999999


Q ss_pred             CceeEEEEEEccccCCCce
Q 016385          341 SELIGCAQVRLCELEPGKV  359 (390)
Q Consensus       341 d~~lG~~~v~l~~l~~~~~  359 (390)
                      |++||++.++++++..+..
T Consensus        85 d~~iG~~~~~l~~l~~~~~  103 (110)
T cd04047          85 HDLIGEFETTLDELLKSSP  103 (110)
T ss_pred             CcEEEEEEEEHHHHhcCCC
Confidence            9999999999999975443

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.56  E-value=1.2e-14  Score=160.22  Aligned_cols=116  Identities=15%  Similarity=0.292  Sum_probs=99.4

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCC-CCEEEEEEEEcCC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDEG  337 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~-~~~L~v~v~d~d~  337 (390)
                      .-.|.|+|+|++|++|.  +..|.+||||++.++.  +++.||++++++.||.|||.|.|.+.++. ++.+.++|||+|.
T Consensus      1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200       1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN--GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred             hCCcceEEEEeeccccc--cccCCCCCeEEEEECC--CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence            56899999999999998  4478999999999982  34678999999999999999999888764 4679999999999


Q ss_pred             CCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeE---EEEE
Q 016385          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ---VRIK  385 (390)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~---i~l~  385 (390)
                      ++ ++.+|++++++.++..+.....||+|.+      ++++.|+   |+++
T Consensus      2053 f~-kd~~G~~~i~l~~vv~~~~~~~~~~L~~------~~~k~G~~~~~~~e 2096 (2102)
T PLN03200       2053 FG-KSSLGKVTIQIDRVVMEGTYSGEYSLNP------ESNKDGSSRTLEIE 2096 (2102)
T ss_pred             cC-CCCCceEEEEHHHHhcCceeeeeeecCc------ccccCCCcceEEEE
Confidence            85 4599999999999998889999999964      3445666   6665

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.53  E-value=6.3e-14  Score=105.89  Aligned_cols=85  Identities=35%  Similarity=0.596  Sum_probs=76.7

Q ss_pred             EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCce
Q 016385          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (390)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~  343 (390)
                      |+|+|.+|++|...+..+..|||+++.+.......++|++++++.+|.|+|+|.|.+..+..+.|.|+|||++..++|++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            68999999999998878899999999998544467999999999999999999999887777789999999999988999


Q ss_pred             eEEEE
Q 016385          344 IGCAQ  348 (390)
Q Consensus       344 lG~~~  348 (390)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.37  E-value=5.7e-12  Score=97.83  Aligned_cols=96  Identities=38%  Similarity=0.655  Sum_probs=82.0

Q ss_pred             EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCce
Q 016385          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (390)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~  343 (390)
                      +.|+|++|+++......+..+||+++++.+.+....+|+++.++.||.|||+|.|.+.....+.+.++|||++..+.+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            67999999999887655678999999997432357899999999999999999999987657799999999998777999


Q ss_pred             eEEEEEEccccCCCce
Q 016385          344 IGCAQVRLCELEPGKV  359 (390)
Q Consensus       344 lG~~~v~l~~l~~~~~  359 (390)
                      +|.+.+++.++..+..
T Consensus        82 ~G~~~~~l~~~~~~~~   97 (101)
T smart00239       82 IGQVTIPLSDLLLGGR   97 (101)
T ss_pred             eEEEEEEHHHcccCcc
Confidence            9999999998876543

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=8.4e-13  Score=128.16  Aligned_cols=118  Identities=32%  Similarity=0.635  Sum_probs=98.5

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~  338 (390)
                      +-...++++|+.|++|..+|..|++|||+...++   +.+.+|+++..++||.|||.|+|..++. +..+.++|||+|..
T Consensus       292 kwsakitltvlcaqgl~akdktg~sdpyvt~qv~---ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~d  367 (1283)
T KOG1011|consen  292 KWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG---KTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDND  367 (1283)
T ss_pred             ccceeeEEeeeecccceecccCCCCCCcEEEeec---ccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCccc
Confidence            4567899999999999999999999999999987   6678899999999999999999999876 55999999998852


Q ss_pred             -----------CCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          339 -----------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       339 -----------~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                                 ..|||+|+..+.+..+..  ..+.|+.|.+..+   ....+|.|++.
T Consensus       368 lksklrqkl~resddflgqtvievrtlsg--emdvwynlekrtd---ksavsgairlh  420 (1283)
T KOG1011|consen  368 LKSKLRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTD---KSAVSGAIRLH  420 (1283)
T ss_pred             HHHHHHHHhhhcccccccceeEEEEeccc--chhhhcchhhccc---hhhccceEEEE
Confidence                       468999999999987653  4688999987542   23456766553

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.37  E-value=5.3e-12  Score=102.96  Aligned_cols=95  Identities=20%  Similarity=0.357  Sum_probs=79.7

Q ss_pred             EEEEEeeecCCccc--cCCCC--CCcEEEEEEecCCCceEeeeccCCCCC--CeeeeEEEEEEecC--------------
Q 016385          264 LEVKLVQAKGLTNK--DLIGK--SDPYAVLFVRPLPEKTKKSKTINNDLN--PIWNEHFEFIVEDE--------------  323 (390)
Q Consensus       264 L~V~v~~a~~L~~~--d~~g~--~dpyv~v~~~~~~~~~~kT~v~~~~~n--P~w~e~f~f~v~~~--------------  323 (390)
                      |+|.|.+|++++..  +..|.  +||||+..+.+....+++|.+..+++|  |.||+.|.|.+..+              
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            78999999996543  34564  999999999865566889999999999  99999999887651              


Q ss_pred             ---------CCCEEEEEEEEcCCCCCCceeEEEEEEccccCCCc
Q 016385          324 ---------STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK  358 (390)
Q Consensus       324 ---------~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~  358 (390)
                               ....|.++|||+|.+++|+++|++++++..+..+.
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                     24578999999999999999999999999886553

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd00030 C2 C2 domain

Probab=99.36  E-value=6.7e-12  Score=97.07  Aligned_cols=101  Identities=39%  Similarity=0.725  Sum_probs=86.7

Q ss_pred             EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCce
Q 016385          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (390)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~  343 (390)
                      |.|++++|+++......+..+||+.+.+..  ...++|+++.++.||.|++.|.|.+.......+.++||+++..+.+++
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   78 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF   78 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence            468999999998766667899999999973  367899999999999999999999987456789999999998877899


Q ss_pred             eEEEEEEccccC-CCceeeEEEEc
Q 016385          344 IGCAQVRLCELE-PGKVKDVWLKL  366 (390)
Q Consensus       344 lG~~~v~l~~l~-~~~~~~~w~~L  366 (390)
                      +|.+.+++.++. .+.....|++|
T Consensus        79 ig~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          79 LGEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             eEEEEEeHHHhhhcCCcCcceecC
Confidence            999999999987 66667778764

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1

Probab=99.35  E-value=7.5e-12  Score=95.90  Aligned_cols=85  Identities=22%  Similarity=0.346  Sum_probs=73.5

Q ss_pred             HHHHHHHhhhH--HHHHHHHHHHhHHHHHhhc-CCCccceEEEeEEecCCCCCeEeeEEEEecC-CCeEEEEEEEEEeeC
Q 016385           75 NHHLEKLWPYV--NEAASELIKSSVEPVLEQY-RPFILSSLKFSKFTLGTVAPQFTGVSIIEDG-GSGVTMELEMQWDAN  150 (390)
Q Consensus        75 N~~l~~~Wp~~--~~~~~~~i~~~l~~~l~~~-~p~~l~~i~~~~~~lG~~~P~i~~ir~~~~~-~~~v~le~~~~~~~~  150 (390)
                      |.+++|++-.+  .+.+.+.+++.++..|++. +|+++++|+++++++|+.||.|+++|+.+.+ ++++.+|+|+.|.|+
T Consensus         1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~   80 (91)
T PF10296_consen    1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG   80 (91)
T ss_pred             ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence            77888876544  3578999999999999984 5999999999999999999999999998654 456999999999999


Q ss_pred             ceEEEEEEe
Q 016385          151 SSIILAIKT  159 (390)
Q Consensus       151 ~~i~l~v~~  159 (390)
                      +.+.++++.
T Consensus        81 ~~l~l~t~l   89 (91)
T PF10296_consen   81 FSLTLETKL   89 (91)
T ss_pred             eEEEEEEEE
Confidence            999888763

These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.31  E-value=3.9e-12  Score=125.12  Aligned_cols=117  Identities=25%  Similarity=0.451  Sum_probs=104.0

Q ss_pred             eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCC
Q 016385          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  341 (390)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d  341 (390)
                      ..|.|+|.+|+||+..+..|.+||||.+.++  +..+.||.++.+++.|.|.|.|+|.++.. -+.|.|-|||.| +++|
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD--~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D   80 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD--QEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRD   80 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeec--chhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-cccc
Confidence            4689999999999999999999999999997  45689999999999999999999999754 468999999999 8999


Q ss_pred             ceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       342 ~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      +.||.+.+.=++|..-...+.|+.|.+   ...+....|+||++
T Consensus        81 ~~IGKvai~re~l~~~~~~d~W~~L~~---VD~dsEVQG~v~l~  121 (800)
T KOG2059|consen   81 DIIGKVAIKREDLHMYPGKDTWFSLQP---VDPDSEVQGKVHLE  121 (800)
T ss_pred             cccceeeeeHHHHhhCCCCccceeccc---cCCChhhceeEEEE
Confidence            999999999888877778999999975   33467788999988

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.28  E-value=1e-11  Score=128.64  Aligned_cols=121  Identities=27%  Similarity=0.463  Sum_probs=103.8

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~  338 (390)
                      .+.|-|+|.+..|.||+..|.+|.+||||++.+.  +...++|+++++|+||.|||.|.+.+.......+.+.|+|+|..
T Consensus      1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln--~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~ 1114 (1227)
T COG5038        1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLN--EKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSG 1114 (1227)
T ss_pred             cccCcEEEEEeccCCCcccccCCCCCceEEEEec--ceecccccchhccCCCCccccceEeeeccccceEEEEEeecccC
Confidence            5789999999999999999999999999999997  34489999999999999999999999977778999999999999


Q ss_pred             CCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          339 QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      .+++.||.+.++|..+..+.....-.+|....    .....|.++..
T Consensus      1115 ~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~----~~~~~g~~~~~ 1157 (1227)
T COG5038        1115 EKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT----FIVLDGTLHPG 1157 (1227)
T ss_pred             CCccccccccccHhhcCcCCccceeeeccCcc----eEecccEeecc
Confidence            99999999999999999887777667775421    22345555544

>PLN02270 phospholipase D alpha

Probab=99.28  E-value=3.9e-11  Score=122.36  Aligned_cols=125  Identities=22%  Similarity=0.403  Sum_probs=101.7

Q ss_pred             ceeEEEEEEeeecCCcccc------------------CCCCCCcEEEEEEecCCCceEeeeccCCC-CCCeeeeEEEEEE
Q 016385          260 PVGTLEVKLVQAKGLTNKD------------------LIGKSDPYAVLFVRPLPEKTKKSKTINND-LNPIWNEHFEFIV  320 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d------------------~~g~~dpyv~v~~~~~~~~~~kT~v~~~~-~nP~w~e~f~f~v  320 (390)
                      -.|.|.++|.+|++|++.+                  ..+.+|||+.+.+.  +.++.||+++.+. .||.|+|+|.+.+
T Consensus         6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~a~v~rtr~~~~~~~~p~w~e~f~i~~   83 (808)
T PLN02270          6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE--KARVGRTRKIENEPKNPRWYESFHIYC   83 (808)
T ss_pred             eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC--CcEEEEEeecCCCCCCCccccceEEee
Confidence            4689999999999998631                  12467999999997  4678999999885 6999999999999


Q ss_pred             ecCCCCEEEEEEEEcCCCCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE--EeecC
Q 016385          321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPPYK  390 (390)
Q Consensus       321 ~~~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p~~  390 (390)
                      .+.. ..+.|.|.|.|.++ ..+||.+.+|+.++..|...+.|+++.....+  ..+..-+|+++  |+|++
T Consensus        84 ah~~-~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~--p~~~~~~~~~~~~f~~~~  151 (808)
T PLN02270         84 AHMA-SNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDNDKN--PIHGGSKIHVKLQYFEVT  151 (808)
T ss_pred             ccCc-ceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCCCC--cCCCCCEEEEEEEEEEcc
Confidence            8875 48999999999886 56999999999999999999999999764211  12222378888  99863

>PLN02223 phosphoinositide phospholipase C

Probab=99.24  E-value=6.4e-11  Score=116.21  Aligned_cols=105  Identities=25%  Similarity=0.341  Sum_probs=85.9

Q ss_pred             eeEEEEEEeeecCCcc-----ccCCCCCCcEEEEEEec--CCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEE
Q 016385          261 VGTLEVKLVQAKGLTN-----KDLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY  333 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~-----~d~~g~~dpyv~v~~~~--~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~  333 (390)
                      ...|.|+|+.|++++.     .+.....||||++.+.+  .+...++|.+..|+.||.|||+|.|.+..++-..|+|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            4679999999998751     12235679999999863  3344677888889999999999999999998888999999


Q ss_pred             EcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      |+|..++|+++|++.+|+..+++|-.   +.+|..
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~GyR---~VpL~~  519 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEGIR---AVPLYD  519 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCCce---eEeccC
Confidence            99988889999999999999998853   456643

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=2e-11  Score=119.23  Aligned_cols=108  Identities=29%  Similarity=0.481  Sum_probs=89.2

Q ss_pred             ccceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEE
Q 016385          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  333 (390)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~  333 (390)
                      .++.|.|+|.|++|++|..++..+.+||||++++...+.  .+++|.+.+++.||.|||+|.|.+...  ..-.+.++||
T Consensus       294 ~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~  373 (421)
T KOG1028|consen  294 LPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVW  373 (421)
T ss_pred             ecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEE
Confidence            467899999999999999999999999999999875442  367899999999999999999988743  4457899999


Q ss_pred             EcCCCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (390)
                      |+|.++++++||++.+....  .+....+|.++.
T Consensus       374 d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~  405 (421)
T KOG1028|consen  374 DHDTLGSNDLIGRCILGSDS--TGEEVRHWQEML  405 (421)
T ss_pred             EcccccccceeeEEEecCCC--CchHHHHHHHHH
Confidence            99999999999998888764  333345555543

>PLN02952 phosphoinositide phospholipase C

Probab=99.18  E-value=3.4e-10  Score=113.41  Aligned_cols=105  Identities=24%  Similarity=0.364  Sum_probs=86.8

Q ss_pred             eeEEEEEEeeecCCccc------cCCCCCCcEEEEEEec--CCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEE
Q 016385          261 VGTLEVKLVQAKGLTNK------DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI  332 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~--~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v  332 (390)
                      ...|.|+|+.|++++..      +.....||||++.+-+  .+..+.+|+++.++.||.|||+|.|.+..++-..++|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46899999999987531      1223459999999863  334577899999999999999999999888777899999


Q ss_pred             EEcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       333 ~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      ||+|..+.++++|++.+|+..|..|-.   |++|..
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~~  581 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGIR---SVPLHD  581 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCce---eEeCcC
Confidence            999988889999999999999998863   888864

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.08  E-value=6.5e-10  Score=111.22  Aligned_cols=105  Identities=21%  Similarity=0.279  Sum_probs=85.3

Q ss_pred             eeEEEEEEeeecCCccc------cCCCCCCcEEEEEEec--CCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEE
Q 016385          261 VGTLEVKLVQAKGLTNK------DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI  332 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~--~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v  332 (390)
                      ...|.|+|+.|+++...      +.....||||++.+-.  .+..+++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46799999999986421      2223569999999863  334467888999999999999999999988888999999


Q ss_pred             EEcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       333 ~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      +|+|...+|+++|+..+|+..|+.|-.   ..+|..
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~  580 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFN  580 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCccc---eEeccC
Confidence            999988889999999999999998753   345643

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.03  E-value=5.2e-11  Score=117.33  Aligned_cols=126  Identities=33%  Similarity=0.610  Sum_probs=100.0

Q ss_pred             ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC-----------------------C-----ceEeeeccCCCCCCe
Q 016385          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP-----------------------E-----KTKKSKTINNDLNPI  311 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-----------------------~-----~~~kT~v~~~~~nP~  311 (390)
                      |.-.+.|.+.+|++|.++|.+|.||||+...+.+.-                       +     -.+-|++++.|+||.
T Consensus       112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk  191 (1103)
T KOG1328|consen  112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK  191 (1103)
T ss_pred             CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence            444566778999999999999999999998774210                       0     024578889999999


Q ss_pred             eeeEEEEEEecCCCCEEEEEEEEcCCC---------------------------------CC---CceeEEEEEEccccC
Q 016385          312 WNEHFEFIVEDESTQHLVVRIYDDEGI---------------------------------QS---SELIGCAQVRLCELE  355 (390)
Q Consensus       312 w~e~f~f~v~~~~~~~L~v~v~d~d~~---------------------------------~~---d~~lG~~~v~l~~l~  355 (390)
                      |+|.|.|.+.+..+..+.+.+||+|.-                                 +.   |||+|.+.+|+.++.
T Consensus       192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP  271 (1103)
T KOG1328|consen  192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP  271 (1103)
T ss_pred             hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence            999999999999888999999998721                                 22   799999999999986


Q ss_pred             CCceeeEEEEcccccccCCCCeeeeEEEEE-Eeec
Q 016385          356 PGKVKDVWLKLVKDLDVQRDTKYRGQVRIK-YPPY  389 (390)
Q Consensus       356 ~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~-y~p~  389 (390)
                      . ...+.||.|++..   ...+..|+++++ +..+
T Consensus       272 ~-~Gld~WFkLepRS---~~S~VqG~~~LklwLsT  302 (1103)
T KOG1328|consen  272 P-DGLDQWFKLEPRS---DKSKVQGQVKLKLWLST  302 (1103)
T ss_pred             c-chHHHHhccCccc---ccccccceEEEEEEEee
Confidence            4 3578999998753   245678999988 6543

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.02  E-value=1.9e-09  Score=107.78  Aligned_cols=105  Identities=23%  Similarity=0.308  Sum_probs=84.7

Q ss_pred             eeEEEEEEeeecCCc----cc--cCCCCCCcEEEEEEe--cCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEE
Q 016385          261 VGTLEVKLVQAKGLT----NK--DLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI  332 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~----~~--d~~g~~dpyv~v~~~--~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v  332 (390)
                      ...|+|+|+.|+++.    ..  +.....||||++.+.  +.+..+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            457999999998753    11  122457999999986  3334577899999999999999999999888878999999


Q ss_pred             EEcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       333 ~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      +|+|..+.|+++|++.+|+..|+.|-.   ..+|..
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~  563 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHS  563 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCccc---eEEccC
Confidence            999988889999999999999998753   345643

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=99.00  E-value=9.5e-10  Score=110.20  Aligned_cols=97  Identities=28%  Similarity=0.438  Sum_probs=81.7

Q ss_pred             EEEEEEeeecCCccc-cC---CCCCCcEEEEEEe--cCCCceEeee-ccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEc
Q 016385          263 TLEVKLVQAKGLTNK-DL---IGKSDPYAVLFVR--PLPEKTKKSK-TINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD  335 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~-d~---~g~~dpyv~v~~~--~~~~~~~kT~-v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~  335 (390)
                      .|.|+|..|+++... +.   ...+|||+.+.+.  +......+|+ +..|+.||.|+|+|+|.+..|+-..++|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            699999999976543 21   2457999999985  2334577888 567899999999999999999888999999999


Q ss_pred             CCCCCCceeEEEEEEccccCCCce
Q 016385          336 EGIQSSELIGCAQVRLCELEPGKV  359 (390)
Q Consensus       336 d~~~~d~~lG~~~v~l~~l~~~~~  359 (390)
                      |..++|+|+|+..+|+.+|.+|-.
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyR  720 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYR  720 (746)
T ss_pred             CCCCcccccceeeccHHHhhCcee
Confidence            999999999999999999998753

>PLN02228 Phosphoinositide phospholipase C

Probab=98.96  E-value=4.5e-09  Score=104.82  Aligned_cols=105  Identities=21%  Similarity=0.285  Sum_probs=84.3

Q ss_pred             eeEEEEEEeeecCCcc---c---cCCCCCCcEEEEEEec--CCCceEeeeccCCCCCCee-eeEEEEEEecCCCCEEEEE
Q 016385          261 VGTLEVKLVQAKGLTN---K---DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVR  331 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~---~---d~~g~~dpyv~v~~~~--~~~~~~kT~v~~~~~nP~w-~e~f~f~v~~~~~~~L~v~  331 (390)
                      ...|+|+|++|++|+.   .   +.....||||++.+.+  .+...++|++++++.||.| ||+|.|.+..++-..|+|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            3479999999998731   1   1123479999999863  3345679999999999999 9999999988887899999


Q ss_pred             EEEcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       332 v~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      |+|+|..+.|+++|++.+|++.|+.|-.   .++|..
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~  543 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHD  543 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccC
Confidence            9999988889999999999999988743   345643

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.86  E-value=7.4e-10  Score=109.37  Aligned_cols=96  Identities=31%  Similarity=0.479  Sum_probs=82.5

Q ss_pred             ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC----CceEeeeccCCCCCCeeeeEEEEEEecC----CCCEEEEE
Q 016385          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVVR  331 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~~~~~nP~w~e~f~f~v~~~----~~~~L~v~  331 (390)
                      ....|.|.|+.|+++.+-|.+|.|||||++.+.|..    ...++|++++.|+||+|+|+|+|.|...    +...+.|+
T Consensus       945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen  945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred             cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEE
Confidence            344556667889999999999999999999998532    3478999999999999999999999753    46689999


Q ss_pred             EEEcCCCCCCceeEEEEEEccccC
Q 016385          332 IYDDEGIQSSELIGCAQVRLCELE  355 (390)
Q Consensus       332 v~d~d~~~~d~~lG~~~v~l~~l~  355 (390)
                      |+|+|-.+.+||-|++.+.|+++.
T Consensus      1025 VMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             eeccceecccccchHHHHhhCCCC
Confidence            999999999999999999998874

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.85  E-value=1.1e-08  Score=78.63  Aligned_cols=85  Identities=24%  Similarity=0.439  Sum_probs=69.3

Q ss_pred             EEEEEeeecCCcccc---CCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCC
Q 016385          264 LEVKLVQAKGLTNKD---LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (390)
Q Consensus       264 L~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~  340 (390)
                      |.|+|.+|+++...+   ..+.+|||+.++++  +.++.||++   +.||.|||+|.|.+. . ...+.+.|||... ..
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve--d~~kaRTr~---srnd~WnE~F~i~Vd-k-~nEiel~VyDk~~-~~   72 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVE--DVERARTKP---SRNDRWNEDFEIPVE-K-NNEEEVIVYDKGG-DQ   72 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEEC--CEEEEeccC---CCCCcccceEEEEec-C-CcEEEEEEEeCCC-Ce
Confidence            578999999998776   56788999999997  345778876   479999999999994 3 5599999999865 34


Q ss_pred             CceeEEEEEEccccCC
Q 016385          341 SELIGCAQVRLCELEP  356 (390)
Q Consensus       341 d~~lG~~~v~l~~l~~  356 (390)
                      .-.+|...+.++++.+
T Consensus        73 ~~Pi~llW~~~sdi~E   88 (109)
T cd08689          73 PVPVGLLWLRLSDIAE   88 (109)
T ss_pred             ecceeeehhhHHHHHH
Confidence            5688998888888743

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.83  E-value=1.8e-08  Score=100.93  Aligned_cols=95  Identities=24%  Similarity=0.386  Sum_probs=79.6

Q ss_pred             eEEEEEEeeecCCccccCCCCCCcEEEEEEec---CCCceEeeeccCCCCCCeee-eEEEEEEecCCCCEEEEEEEEcCC
Q 016385          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP---LPEKTKKSKTINNDLNPIWN-EHFEFIVEDESTQHLVVRIYDDEG  337 (390)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~~~kT~v~~~~~nP~w~-e~f~f~v~~~~~~~L~v~v~d~d~  337 (390)
                      -.|.|+|+.|+.|+... .|-..||+.+.+-+   +.+..++|.++.|++||.|| |.|+|.+.+|+-..|+|.|+|.|.
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence            46889999999999543 35567999999853   22334556667899999999 999999999998999999999999


Q ss_pred             CCCCceeEEEEEEccccCCC
Q 016385          338 IQSSELIGCAQVRLCELEPG  357 (390)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~~  357 (390)
                      ++...|||++..|+..+..|
T Consensus      1144 fs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred             cCCcceeeeeecchhhhhcc
Confidence            99889999999999888765

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.82  E-value=1.3e-08  Score=98.55  Aligned_cols=116  Identities=26%  Similarity=0.485  Sum_probs=95.6

Q ss_pred             eEEEEEEeeecCCccccCC-CCCCcEEEEEEecCCCceEeeeccCCCCCCeee-eEEEEEEecC--CCCEEEEEEEEcCC
Q 016385          262 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN-EHFEFIVEDE--STQHLVVRIYDDEG  337 (390)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~-e~f~f~v~~~--~~~~L~v~v~d~d~  337 (390)
                      |.|.|+|..|++|+-+|.. ...|.|+.+++.   ...+||.+..+++||.|| +.|.|.|.+.  .++.|.+++.|+|.
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~---n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt   79 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFA---NTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT   79 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEec---ccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence            6788999999999998864 457999999997   678999999999999999 6789998764  56789999999999


Q ss_pred             CCCCceeEEEEEEccccC----------CCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          338 IQSSELIGCAQVRLCELE----------PGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~----------~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      .+.+|-||.+.++++.+.          .|.....|+++....     ..-+|+|++-
T Consensus        80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-----hgirgeinvi  132 (1169)
T KOG1031|consen   80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-----HGIRGEINVI  132 (1169)
T ss_pred             cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-----ccccceeEEE
Confidence            999999999999987762          234557999987532     2356887754

>PLN02352 phospholipase D epsilon

Probab=98.80  E-value=4.7e-08  Score=99.93  Aligned_cols=119  Identities=13%  Similarity=0.294  Sum_probs=89.9

Q ss_pred             cceeEEEEEEeeecCCccc----cCC-CCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNK----DLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY  333 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~----d~~-g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~  333 (390)
                      .-.|.|.++|.+|+.+...    ... ...|||+.+.++  +.++.||   .+..||.|+|+|.+.+.+.....+.|.|.
T Consensus         7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk   81 (758)
T PLN02352          7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG--NKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLK   81 (758)
T ss_pred             ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeC--CcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEe
Confidence            3579999999999843321    111 223999999997  4667888   55669999999999998876458999998


Q ss_pred             EcCCCCCCceeEEEEEEccccCCCce-eeEEEEcccccccCCCCeeeeEEEEE--EeecC
Q 016385          334 DDEGIQSSELIGCAQVRLCELEPGKV-KDVWLKLVKDLDVQRDTKYRGQVRIK--YPPYK  390 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v~l~~l~~~~~-~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p~~  390 (390)
                      |     ...+||.+.+|+.++..|.. .+.|+++.......  ... .+|+++  |+|.+
T Consensus        82 ~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p--~~~-~~~~~~~~~~~~~  133 (758)
T PLN02352         82 T-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKP--NPE-LKLRFMLWFRPAE  133 (758)
T ss_pred             c-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCC--CCC-CEEEEEEEEEEhh
Confidence            8     26799999999999988866 89999997643221  111 478888  99863

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.63  E-value=4.5e-08  Score=97.05  Aligned_cols=116  Identities=22%  Similarity=0.308  Sum_probs=85.6

Q ss_pred             eeecCCccccCCCCCCcEEEEEEe-cCCCceEeeeccCCCCCCeeeeEEEEEEecC---------------CCCEEEEEE
Q 016385          269 VQAKGLTNKDLIGKSDPYAVLFVR-PLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------------STQHLVVRI  332 (390)
Q Consensus       269 ~~a~~L~~~d~~g~~dpyv~v~~~-~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~---------------~~~~L~v~v  332 (390)
                      ++++++.+.+ ++.+|||+.+... +...+..+|++++++.+|.|+|.|+|.+...               ....+++++
T Consensus       138 L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~l  216 (800)
T KOG2059|consen  138 LKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDL  216 (800)
T ss_pred             hhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEee
Confidence            4444444443 4669999999875 3333457899999999999999999998644               344688999


Q ss_pred             EE-cCCCCCCceeEEEEEEccccCCCceeeEEEEcccccccCC--CCeeeeEEEEE
Q 016385          333 YD-DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQR--DTKYRGQVRIK  385 (390)
Q Consensus       333 ~d-~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~--~~~~~G~i~l~  385 (390)
                      |+ .+....++|+|++.+++..+......+.||.|++..+..+  .+..-|.+++.
T Consensus       217 W~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~  272 (800)
T KOG2059|consen  217 WNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLN  272 (800)
T ss_pred             ccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeee
Confidence            99 5566669999999999998886677789999998643322  23345666665

>KOG3532 consensus Predicted protein kinase [General function prediction only]

Probab=98.52  E-value=6.2e-07  Score=88.52  Aligned_cols=227  Identities=15%  Similarity=0.273  Sum_probs=160.8

Q ss_pred             CCCCccccCCc-------ccHHHHHHHHHHHhhhH--HHH----HHHHHHHhHHHHHhhcC-CCccceEEEeEEecCCCC
Q 016385           58 FYPSWVVFSHR-------QKLTWLNHHLEKLWPYV--NEA----ASELIKSSVEPVLEQYR-PFILSSLKFSKFTLGTVA  123 (390)
Q Consensus        58 ~~p~w~~~~~~-------E~~~WlN~~l~~~Wp~~--~~~----~~~~i~~~l~~~l~~~~-p~~l~~i~~~~~~lG~~~  123 (390)
                      ..|.|+..-..       ..|-.+|.++..++...  ..+    +-+.+...++..+.... ...++.+.+.++.+|.+.
T Consensus        81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f  160 (1051)
T KOG3532|consen   81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF  160 (1051)
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence            45777665322       24666677777776532  122    33333344444554433 348999999999999999


Q ss_pred             CeEeeEEEEecC------------C-------------CeEEEEEEEEEeeCceEEEEEEeecCeeeeEEEEEEEEEEEE
Q 016385          124 PQFTGVSIIEDG------------G-------------SGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVF  178 (390)
Q Consensus       124 P~i~~ir~~~~~------------~-------------~~v~le~~~~~~~~~~i~l~v~~~~g~~~~v~v~~~~~~g~~  178 (390)
                      |.+++.+++.-+            +             ..+.+-++++|.|+..-++++....+....++|+..+++|.+
T Consensus       161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~  240 (1051)
T KOG3532|consen  161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV  240 (1051)
T ss_pred             ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence            999999998621            0             124566899999999888888877777778999999999999


Q ss_pred             EEEEeeCCcCCCccceEEEEeccceeEEEEEEE--cccccccCCCcHHHHHHHHHHHhhccccCCceeEe--eCCCCC--
Q 016385          179 RLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKV--VGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIV--PILPGD--  252 (390)
Q Consensus       179 rv~l~pl~~~~P~~~~~~~~f~~~P~l~f~l~~--~g~~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~~i--pl~~~~--  252 (390)
                      |+.+.    ..| ..+++++|...|.+..+++.  .|-.+..  -|.+.|...++.++.+...|||++..  |..+..  
T Consensus       241 r~~~~----r~p-y~hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~  313 (1051)
T KOG3532|consen  241 RVILS----RQP-YHHWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIF  313 (1051)
T ss_pred             eEEEE----ecc-ceeeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccCccc
Confidence            99986    333 67789999999988777655  2222211  25678888999999999999998863  444321  


Q ss_pred             ------cccccccceeEEEEEEeeecCCccccCCCCCCcEEEEEEec
Q 016385          253 ------YSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP  293 (390)
Q Consensus       253 ------~~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~  293 (390)
                            .+.....+.|.+.|+++++..|..  ..++..-||.+.+.+
T Consensus       314 ~a~~~~~s~~~i~~~G~~~V~~lE~srL~~--~~k~~e~Yct~T~e~  358 (1051)
T KOG3532|consen  314 QASPPINSFTHIKMEGGIEVTVLECSRLKD--KNKNYEVYCTVTIES  358 (1051)
T ss_pred             ccCcchhhhhheeccCceeEeehhhhhhhc--cCCccceeeeccccC
Confidence                  111234689999999999988864  457788999888763

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.43  E-value=1.8e-07  Score=97.24  Aligned_cols=109  Identities=26%  Similarity=0.402  Sum_probs=90.2

Q ss_pred             ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCc--eEeeeccCCCCCCeeeeEEEEE---EecCCCCEEEEEEEE
Q 016385          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFI---VEDESTQHLVVRIYD  334 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~v~~~~~nP~w~e~f~f~---v~~~~~~~L~v~v~d  334 (390)
                      ..|+|.|-|.-+++|.--.....+||||+.++.|+..+  +.||+++++|.||.|||.....   ......+.|.+.||.
T Consensus      1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred             cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence            47889999999999965444567999999999876643  6789999999999999976554   223355789999999


Q ss_pred             cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      .+....+.++|.+.++|.++...+....||.|..
T Consensus      1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred             ccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence            9999999999999999998877766779999954

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.40  E-value=1e-06  Score=86.32  Aligned_cols=118  Identities=25%  Similarity=0.415  Sum_probs=86.2

Q ss_pred             eeecCCccccCCCCCCcEEEEEEec-CC--CceEeeeccCCCCCCeeeeEEEEEEecC----CCCEEEEEEEEcCCCCCC
Q 016385          269 VQAKGLTNKDLIGKSDPYAVLFVRP-LP--EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVVRIYDDEGIQSS  341 (390)
Q Consensus       269 ~~a~~L~~~d~~g~~dpyv~v~~~~-~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~----~~~~L~v~v~d~d~~~~d  341 (390)
                      .+|++|.++|.++++|||..++-.. ++  ...++|++.++++||.|.+ |.+.....    ....+.+.+||++..+++
T Consensus       143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~  221 (529)
T KOG1327|consen  143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH  221 (529)
T ss_pred             eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence            5588999999999999999888542 22  2378999999999999998 55554332    246888999999999999


Q ss_pred             ceeEEEEEEccccCCCceeeEEEEccc-ccccCCCCeeeeEEEEE-Ee
Q 016385          342 ELIGCAQVRLCELEPGKVKDVWLKLVK-DLDVQRDTKYRGQVRIK-YP  387 (390)
Q Consensus       342 ~~lG~~~v~l~~l~~~~~~~~w~~L~~-~~~~~~~~~~~G~i~l~-y~  387 (390)
                      +++|.+..++.++........|....+ ..+.+++.+.+|++.+. |.
T Consensus       222 ~~ig~~~tt~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~g~~~l~~~~  269 (529)
T KOG1327|consen  222 DLIGKFQTTLSELQEPGSPNQIMLINPKKKAKKKSYKNSGQLILDRFT  269 (529)
T ss_pred             CceeEecccHHHhcccCCcccccccChhhhhhhhcccccceEEehhee
Confidence            999999999998875222334433332 22223456677888876 54

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=2e-06  Score=84.58  Aligned_cols=111  Identities=22%  Similarity=0.337  Sum_probs=91.6

Q ss_pred             eeEEEEEEeeecCCccccCCCCCCcEEEEEEe-c---CCCceEeeeccCCCCCCeeeeEEEEEEecC---CCCEEEEEEE
Q 016385          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR-P---LPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIY  333 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-~---~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~---~~~~L~v~v~  333 (390)
                      ...++|.|+.|.+|+-. ..|.-.||+.+.+- |   +.++++.|++..++..|.+||+|.|.+.+.   +.-.|.++|.
T Consensus      1124 ehkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred             cceEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence            34577888999998754 35677899999974 2   334577899999999999999999998653   5568999999


Q ss_pred             EcCCCCCCceeEEEEEEccccCCCceeeEEEEccccccc
Q 016385          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDV  372 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~  372 (390)
                      |+.-.+.|..+|-+.+.|.++........|++|.+...+
T Consensus      1203 DYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrrihm 1241 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGRRIHM 1241 (1283)
T ss_pred             hheeecccceeeeeeeehhhHhhcCceeEeeeccccccc
Confidence            998888899999999999999888888999999876544

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.29  E-value=3.7e-07  Score=93.75  Aligned_cols=92  Identities=27%  Similarity=0.389  Sum_probs=79.6

Q ss_pred             eeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCC
Q 016385          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~  340 (390)
                      .-.++|.+++|-+|.+.|.+|.+|||+.+.++.. ...-++..+.+++||+|++.|++....+....+.+.|||+|..+.
T Consensus       612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~-~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~  690 (1105)
T KOG1326|consen  612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKK-RTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ  690 (1105)
T ss_pred             eeeEEEEEEEeeeccccCCCCCcCceeeeeeccc-hhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence            3456799999999999999999999999998721 112456678999999999999998888877899999999999999


Q ss_pred             CceeEEEEEEccc
Q 016385          341 SELIGCAQVRLCE  353 (390)
Q Consensus       341 d~~lG~~~v~l~~  353 (390)
                      |+.+|+..+++++
T Consensus       691 d~~iget~iDLEn  703 (1105)
T KOG1326|consen  691 DEKIGETTIDLEN  703 (1105)
T ss_pred             cchhhceehhhhh
Confidence            9999999999865

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=1.3e-06  Score=79.85  Aligned_cols=104  Identities=24%  Similarity=0.347  Sum_probs=83.0

Q ss_pred             ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCc--eEeeeccCCCCCCeeeeEEEEEEec--CCCCEEEEEEEEc
Q 016385          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYDD  335 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~v~~~~~nP~w~e~f~f~v~~--~~~~~L~v~v~d~  335 (390)
                      ...-+.|++++|..|..+|.+|.+|||+..++.++.+.  +++|++.+++.+|.++++|.+.+..  .....+.+.+||+
T Consensus       231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~  310 (362)
T KOG1013|consen  231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY  310 (362)
T ss_pred             CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence            45678899999999999999999999999999865443  5678889999999999999988754  3456889999999


Q ss_pred             CCCCCCceeEEEEEEccccCCCceeeEEEE
Q 016385          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLK  365 (390)
Q Consensus       336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~  365 (390)
                      +..+..+.+|-+....  .+.+....+|..
T Consensus       311 ~~G~s~d~~GG~~~g~--~rr~~v~~h~gr  338 (362)
T KOG1013|consen  311 DIGKSNDSIGGSMLGG--YRRGEVHKHWGR  338 (362)
T ss_pred             CCCcCccCCCcccccc--cccchhhcCccc
Confidence            9877888999865543  344555555543

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=6.9e-07  Score=81.55  Aligned_cols=129  Identities=29%  Similarity=0.406  Sum_probs=93.9

Q ss_pred             cccceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEE--EEEEecC-CCCEEEEE
Q 016385          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHF--EFIVEDE-STQHLVVR  331 (390)
Q Consensus       257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f--~f~v~~~-~~~~L~v~  331 (390)
                      +......+..++.+|++|+.++.++..|||++..+.+.-.  .+.+|++..+++||.|+|+-  .+...+. ....+++.
T Consensus        88 y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~  167 (362)
T KOG1013|consen   88 YDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKV  167 (362)
T ss_pred             hhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhee
Confidence            3456678889999999999999999999999999875322  25778899999999999864  3444433 34567899


Q ss_pred             EEEcCCCCCCceeEEEEEEccccCCCcee--eEEEEcccccc-c-CCCCeeeeEEEEE
Q 016385          332 IYDDEGIQSSELIGCAQVRLCELEPGKVK--DVWLKLVKDLD-V-QRDTKYRGQVRIK  385 (390)
Q Consensus       332 v~d~d~~~~d~~lG~~~v~l~~l~~~~~~--~~w~~L~~~~~-~-~~~~~~~G~i~l~  385 (390)
                      +.|.+.+...+++|+..+++..+.+...+  ..|+.-.-... . ..+...+|+|.++
T Consensus       168 vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~is  225 (362)
T KOG1013|consen  168 VCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILIS  225 (362)
T ss_pred             eccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeee
Confidence            99999998899999999999888654432  34433221111 1 1234678888887

>PLN02964 phosphatidylserine decarboxylase

Probab=98.02  E-value=9.8e-06  Score=82.58  Aligned_cols=90  Identities=17%  Similarity=0.337  Sum_probs=75.4

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~  338 (390)
                      .-.|...+++++|+    ++   ..|+|..+..-  +.+++||.+.++|.||+||+...|.+...+....++.|||.+.+
T Consensus        51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~--g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (644)
T PLN02964         51 DFSGIALLTLVGAE----MK---FKDKWLACVSF--GEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL  121 (644)
T ss_pred             cccCeEEEEeehhh----hc---cCCcEEEEEEe--cceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence            46799999999987    33   36898765432  47899999999999999999999999877666779999999999


Q ss_pred             CCCceeEEEEEEccccCCC
Q 016385          339 QSSELIGCAQVRLCELEPG  357 (390)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~~  357 (390)
                      ++++++|.|++++.++...
T Consensus       122 s~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964        122 SKNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             CHHHhhhheeecHhhccHH
Confidence            9999999999988776543

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.85  E-value=4.3e-05  Score=60.85  Aligned_cols=103  Identities=17%  Similarity=0.378  Sum_probs=74.5

Q ss_pred             EEEEEeeecCCcccc---------C----CCCCCcEEEEEEec-CCCceEeeeccCCCCCCeeeeEEEEEEe--------
Q 016385          264 LEVKLVQAKGLTNKD---------L----IGKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVE--------  321 (390)
Q Consensus       264 L~V~v~~a~~L~~~d---------~----~g~~dpyv~v~~~~-~~~~~~kT~v~~~~~nP~w~e~f~f~v~--------  321 (390)
                      |.|.|.+|.+|+...         .    .-.-++|+.+.+.- .+.+..+|+++.++-.|.|+.+++|.++        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            357788888886421         0    01247999999763 2356788999999999999999999865        


Q ss_pred             c-------CCCCEEEEEEEEcCCC----------CCCceeEEEEEEccccCC-CceeeEEEEc
Q 016385          322 D-------ESTQHLVVRIYDDEGI----------QSSELIGCAQVRLCELEP-GKVKDVWLKL  366 (390)
Q Consensus       322 ~-------~~~~~L~v~v~d~d~~----------~~d~~lG~~~v~l~~l~~-~~~~~~w~~L  366 (390)
                      .       .+...+.++||+.+..          .+|-.||.+.+|+.+|.. ......||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            1       1456789999996532          245689999999999854 3456788874

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.66  E-value=4.6e-05  Score=56.33  Aligned_cols=98  Identities=20%  Similarity=0.249  Sum_probs=67.5

Q ss_pred             EEEEeeecCCccccCCC-CCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEe--cCCCCEEEEEEEEcCCCCCC
Q 016385          265 EVKLVQAKGLTNKDLIG-KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE--DESTQHLVVRIYDDEGIQSS  341 (390)
Q Consensus       265 ~V~v~~a~~L~~~d~~g-~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~--~~~~~~L~v~v~d~d~~~~d  341 (390)
                      -|++++|+++.-....| ...-|++--+.-.....+||++..+..||.|.|+|.|.+.  ...+-.|-+.|+.  ...+.
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK   79 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK   79 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence            37889999986543222 2334444333312234678999999999999999988764  3345577888888  45678


Q ss_pred             ceeEEEEEEccccCCCceeeEEEE
Q 016385          342 ELIGCAQVRLCELEPGKVKDVWLK  365 (390)
Q Consensus       342 ~~lG~~~v~l~~l~~~~~~~~w~~  365 (390)
                      +.||.|.+.++++.+ +..++|.+
T Consensus        80 e~iG~~sL~l~s~ge-eE~~HW~e  102 (103)
T cd08684          80 RTIGECSLSLRTLST-QETDHWLE  102 (103)
T ss_pred             ceeeEEEeecccCCH-HHhhhhhc
Confidence            899999999987643 34567754

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.50  E-value=2.2e-05  Score=81.18  Aligned_cols=104  Identities=21%  Similarity=0.290  Sum_probs=81.0

Q ss_pred             eeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC---------CCCEEEEE
Q 016385          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------STQHLVVR  331 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~---------~~~~L~v~  331 (390)
                      .-.+++.+.+|+.|...|..+.+|||+.+.+-   ++.+.|.++.+|+||.|+.+..|.-...         .-..+.++
T Consensus       205 ~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~---~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e  281 (1105)
T KOG1326|consen  205 HSPLRSYIYQARALGAPDKDDESDPDAAVEFC---GQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFE  281 (1105)
T ss_pred             hhhhHHHHHHHHhhcCCCcccCCCchhhhhcc---cccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEE
Confidence            34567788999999999988999999999886   6788999999999999999877742211         12357899


Q ss_pred             EEEcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       332 v~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      +||.+..+.++++|++.....-+.. ...-.|+++..
T Consensus       282 ~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~r  317 (1105)
T KOG1326|consen  282 VYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMR  317 (1105)
T ss_pred             eehhhhhchHHhhcccccceEEEec-CCccceEEeec
Confidence            9999999999999997765433222 34557888765

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.15  E-value=0.0004  Score=64.91  Aligned_cols=111  Identities=23%  Similarity=0.365  Sum_probs=86.6

Q ss_pred             cceeEEEEEEeeecCCccccC-CCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEE-
Q 016385          259 KPVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD-  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d-  334 (390)
                      ...|.+.|.+++|++|..+.- ...++||+++++.+.+.  .+.+|+...+|++|.+.....|.-..+ ...|.+.+|. 
T Consensus       266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~-~k~Lq~tv~gd  344 (405)
T KOG2060|consen  266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP-GKYLQGTVWGD  344 (405)
T ss_pred             cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC-ccEEEEEEecc
Confidence            567899999999999986542 23689999999875442  256788888999988877666665544 5689999985 


Q ss_pred             cCCCCCCceeEEEEEEccccCCCc-eeeEEEEccccc
Q 016385          335 DEGIQSSELIGCAQVRLCELEPGK-VKDVWLKLVKDL  370 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~~-~~~~w~~L~~~~  370 (390)
                      +..+.++.|+|.+++-++++.-+. ..-.||+|....
T Consensus       345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss  381 (405)
T KOG2060|consen  345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS  381 (405)
T ss_pred             ccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence            666777889999999999997665 677999998743

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.74  E-value=0.021  Score=47.78  Aligned_cols=123  Identities=13%  Similarity=0.154  Sum_probs=82.9

Q ss_pred             ceeEEEEEEeeecCCccccC--CCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCC-------------
Q 016385          260 PVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-------------  324 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~-------------  324 (390)
                      ..--|+++|..++-+...-.  .+..+.-..+++. .++|.++|+.+..+.+|.++|.|.|.+....             
T Consensus         7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~-f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~   85 (156)
T PF15627_consen    7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLH-FRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI   85 (156)
T ss_pred             CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEE-ecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence            44578899999986543211  1455555666554 3478999999999999999999999986442             


Q ss_pred             CCEEEEEEEEcCCCCCCceeEEEEEEccccCCCcee--eEEEEcccccccCCCCeeeeEEEEE
Q 016385          325 TQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK--DVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       325 ~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~~~--~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      .+.+.+.|-..|..+...++|+-.++...+......  ..-..|..  .........|.|.++
T Consensus        86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G--~~~e~kv~~GiL~l~  146 (156)
T PF15627_consen   86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCG--VGPESKVPVGILDLR  146 (156)
T ss_pred             CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEec--cCCCCccceeEEEEE
Confidence            346788888877776678999999998887544333  22233332  112223467877766

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=96.62  E-value=0.0014  Score=61.97  Aligned_cols=109  Identities=18%  Similarity=0.185  Sum_probs=78.8

Q ss_pred             ceeEEEEEEeeecCCccccCCCCCCcEEEEEEe--cCCCceEeeeccCCCCCCeeeeEEEEEEecC-----------CCC
Q 016385          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-----------STQ  326 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~-----------~~~  326 (390)
                      ....|.+.|+++.+++...-....|-|+.+.+.  .+..++.+|.+++++.+|.|+|.|.+.+..-           ...
T Consensus       365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~  444 (523)
T KOG3837|consen  365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL  444 (523)
T ss_pred             chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence            344566677777776543222235677777753  2335677899999999999999999988651           233


Q ss_pred             EEEEEEEEcCCC-CCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          327 HLVVRIYDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       327 ~L~v~v~d~d~~-~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      .+.|++|+...+ .+|.++|.+.+.+.-|.........++|..
T Consensus       445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~D  487 (523)
T KOG3837|consen  445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKD  487 (523)
T ss_pred             CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccc
Confidence            588999998764 678999999999988876666667778764

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=95.90  E-value=0.12  Score=49.21  Aligned_cols=100  Identities=11%  Similarity=0.250  Sum_probs=77.1

Q ss_pred             EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEec-------CCCCEEEEEEEEcC
Q 016385          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-------ESTQHLVVRIYDDE  336 (390)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~-------~~~~~L~v~v~d~d  336 (390)
                      +.++|++|++++...   ...-.+...+.   +....|..+..+..|.||......+..       .....+++++|-.|
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~n---g~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~   75 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFN---GESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD   75 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeC---CceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence            568899999998652   23455566665   677888888889999999877666642       25668999999988


Q ss_pred             -CCCCCceeEEEEEEcccc---CCC--ceeeEEEEcccc
Q 016385          337 -GIQSSELIGCAQVRLCEL---EPG--KVKDVWLKLVKD  369 (390)
Q Consensus       337 -~~~~d~~lG~~~v~l~~l---~~~--~~~~~w~~L~~~  369 (390)
                       ..++.+.+|.+.++|...   ..+  ..+..|++|...
T Consensus        76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~  114 (340)
T PF12416_consen   76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS  114 (340)
T ss_pred             CCCCcceeccEEEEEccccccccccccccCCCeeEcccc
Confidence             556788999999999988   555  567899999864

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=95.88  E-value=0.02  Score=59.26  Aligned_cols=92  Identities=24%  Similarity=0.421  Sum_probs=69.2

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC----CceEeeecc-CCCCCCeeeeE-EEEE-EecCCCCEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTI-NNDLNPIWNEH-FEFI-VEDESTQHLVVR  331 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~-~~~~nP~w~e~-f~f~-v~~~~~~~L~v~  331 (390)
                      -..+.+.|+|++|+-|..++    ..-||.+.+-..+    .+.++|+++ .++.||.|+|+ |.|. |--++-..|+|.
T Consensus       700 vIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRia  775 (1189)
T KOG1265|consen  700 VIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIA  775 (1189)
T ss_pred             eEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeee
Confidence            35678899999999987654    4589999874322    245678776 57899999964 6664 333455689999


Q ss_pred             EEEcCCCCCCceeEEEEEEccccCCCc
Q 016385          332 IYDDEGIQSSELIGCAQVRLCELEPGK  358 (390)
Q Consensus       332 v~d~d~~~~d~~lG~~~v~l~~l~~~~  358 (390)
                      ||+..    .+++|+-.+|++.+..|-
T Consensus       776 vyeEg----gK~ig~RIlpvd~l~~GY  798 (1189)
T KOG1265|consen  776 VYEEG----GKFIGQRILPVDGLNAGY  798 (1189)
T ss_pred             eeccC----CceeeeeccchhcccCcc
Confidence            99975    469999999999988774

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.79  E-value=0.26  Score=41.61  Aligned_cols=99  Identities=19%  Similarity=0.336  Sum_probs=63.8

Q ss_pred             eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCc---eEeeeccCCCCCCeeeeEEEEEEe--c-CCCCEEEEEEEEc
Q 016385          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDD  335 (390)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~v~~~~~nP~w~e~f~f~v~--~-~~~~~L~v~v~d~  335 (390)
                      ..++|+++++.++.-.   ..+|-|+.+.+-..+..   ...|+.+.. .++.|||...|.+.  + +.+..|.|.+|+.
T Consensus         8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            3678999999988754   34688888865421111   122333332 67999999888764  3 3567899999997


Q ss_pred             CCCC----CCceeEEEEEEccc----cCCCcee-eEEE
Q 016385          336 EGIQ----SSELIGCAQVRLCE----LEPGKVK-DVWL  364 (390)
Q Consensus       336 d~~~----~d~~lG~~~v~l~~----l~~~~~~-~~w~  364 (390)
                      ....    ....+|.+.++|-+    |..|... ..|.
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~~~~Lr~G~~~L~lW~  121 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDYTDTLVSGKMALNLWP  121 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECCCChhhCCCEEEEEEc
Confidence            6421    23569999999965    3445433 4564

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.76  E-value=0.28  Score=42.17  Aligned_cols=89  Identities=19%  Similarity=0.259  Sum_probs=59.7

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEecCCC---ceEeeeccCCCCCCeeeeEEEEEEe--c-CCCCEEEEEEEEcC
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDDE  336 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~v~~~~~nP~w~e~f~f~v~--~-~~~~~L~v~v~d~d  336 (390)
                      .++|+++++.++...  ....+-|+.+.+--.+.   ....|+.+..+.++.|||...|.+.  + +.+..|.+.+|+..
T Consensus         9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~   86 (173)
T cd08693           9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS   86 (173)
T ss_pred             CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence            678999999998752  23466777765431111   1234544444567999999888653  3 35678999999975


Q ss_pred             CCC----------------CCceeEEEEEEccc
Q 016385          337 GIQ----------------SSELIGCAQVRLCE  353 (390)
Q Consensus       337 ~~~----------------~d~~lG~~~v~l~~  353 (390)
                      ...                ++..||.+.++|-+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd  119 (173)
T cd08693          87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD  119 (173)
T ss_pred             ccccccccccccccccccCcceEEEEEeEEEEc
Confidence            422                24699999999865

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.65  E-value=0.27  Score=41.46  Aligned_cols=91  Identities=18%  Similarity=0.220  Sum_probs=58.9

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEecCC---CceEeeeccCCCCCCeeeeEEEEEEe--c-CCCCEEEEEEEEcC
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDDE  336 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~v~~~~~nP~w~e~f~f~v~--~-~~~~~L~v~v~d~d  336 (390)
                      .++|++....+....+ ....+-|+.+.+-..+   .....|.......++.|||...|.+.  + +.+..|.+.+|+.+
T Consensus         9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~   87 (156)
T cd08380           9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS   87 (156)
T ss_pred             CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence            4667777777765411 2345667766553211   12334444443468999999888753  2 35668999999987


Q ss_pred             CCC--CCceeEEEEEEcccc
Q 016385          337 GIQ--SSELIGCAQVRLCEL  354 (390)
Q Consensus       337 ~~~--~d~~lG~~~v~l~~l  354 (390)
                      ..+  ++..+|.+.+++-+-
T Consensus        88 ~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          88 EPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             cCCCCcceEEEEEeEEeEcc
Confidence            543  468999999999663

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=94.63  E-value=0.067  Score=53.16  Aligned_cols=61  Identities=25%  Similarity=0.467  Sum_probs=51.5

Q ss_pred             ceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCC----CCCCceeEEEEEEccccCCC
Q 016385          297 KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG----IQSSELIGCAQVRLCELEPG  357 (390)
Q Consensus       297 ~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~----~~~d~~lG~~~v~l~~l~~~  357 (390)
                      ...+|.++.+.+||.|.+.|.+.......|.++++++|.+.    ...++|+|+++..+..+...
T Consensus        41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~  105 (529)
T KOG1327|consen   41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSS  105 (529)
T ss_pred             cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhh
Confidence            35689999999999999999888877788999999999764    35678999999999887543

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=94.46  E-value=0.096  Score=48.18  Aligned_cols=81  Identities=17%  Similarity=0.167  Sum_probs=58.8

Q ss_pred             cceeEEEEEEeeecCCccccC--CCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDE  336 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d  336 (390)
                      ...|.|.+++..+++|+-...  .-.-+-||++..+  .....+|.+.....--.|.|+|+.++.+.  ..+.+-||.|+
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d--rqh~aRt~vrs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW~  123 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD--RQHPARTRVRSSGPGFAWAEDFKHDVVNI--EVLHYLVYSWP  123 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeec--ccCccccccccCCCCccchhhceeecccc--eeeeEEEeecC
Confidence            467999999999999974321  2346899999876  23345566665666678999999988644  37888999988


Q ss_pred             CCCCCce
Q 016385          337 GIQSSEL  343 (390)
Q Consensus       337 ~~~~d~~  343 (390)
                      .-.++++
T Consensus       124 pq~RHKL  130 (442)
T KOG1452|consen  124 PQRRHKL  130 (442)
T ss_pred             chhhccc
Confidence            7656654

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=94.39  E-value=2.2  Score=35.03  Aligned_cols=103  Identities=15%  Similarity=0.220  Sum_probs=62.6

Q ss_pred             eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeec-cCCCCCCeeeeEEEEEEec--------CCCCEEEEEE
Q 016385          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT-INNDLNPIWNEHFEFIVED--------ESTQHLVVRI  332 (390)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v-~~~~~nP~w~e~f~f~v~~--------~~~~~L~v~v  332 (390)
                      =.+.+++.+..+++.    .....|+....+.......+|+. ...+..-.|||.|.+.+.-        .+...+.+.|
T Consensus         7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v   82 (143)
T PF10358_consen    7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV   82 (143)
T ss_pred             EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence            356788888888774    12233344433321111233333 2345568999999887531        1344688999


Q ss_pred             EEcCCCCCCceeEEEEEEccccCCC--ceeeEEEEccc
Q 016385          333 YDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVK  368 (390)
Q Consensus       333 ~d~d~~~~d~~lG~~~v~l~~l~~~--~~~~~w~~L~~  368 (390)
                      +.....++...+|.+.++|.+....  .....-++|..
T Consensus        83 ~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~  120 (143)
T PF10358_consen   83 FEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK  120 (143)
T ss_pred             EEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc
Confidence            9875433346999999999998763  34555566653

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.95  E-value=0.25  Score=41.81  Aligned_cols=74  Identities=18%  Similarity=0.219  Sum_probs=51.4

Q ss_pred             CCCCcEEEEEEecCCCc---eEeeeccCCCCCCeeeeEEEEEEe--c-CCCCEEEEEEEEcCCCCCCceeEEEEEEcccc
Q 016385          281 GKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL  354 (390)
Q Consensus       281 g~~dpyv~v~~~~~~~~---~~kT~v~~~~~nP~w~e~f~f~v~--~-~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l  354 (390)
                      ..+|-|+.+.+-..+..   ...|+.+.-+..+.|||...|.+.  + +.+..|.+++||.+..++...+|.+.+++-+-
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            45778887766422211   224444444567889999888764  3 35678999999988666678999999999653

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.04  E-value=0.39  Score=41.23  Aligned_cols=93  Identities=16%  Similarity=0.221  Sum_probs=61.2

Q ss_pred             eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCc---eEeeeccC----CCCCCeeeeEEEEEEe--c-CCCCEEEEE
Q 016385          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTIN----NDLNPIWNEHFEFIVE--D-ESTQHLVVR  331 (390)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~v~~----~~~nP~w~e~f~f~v~--~-~~~~~L~v~  331 (390)
                      ..+.|+|.++.+++........|-|+.+.+--.+..   ...|+...    -...+.|||...|.+.  + +.+..|.+.
T Consensus         8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it   87 (171)
T cd04012           8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT   87 (171)
T ss_pred             ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence            457889999999886554445788888765421111   12333211    1235779998888763  2 356689999


Q ss_pred             EEEcCCCC---------CCceeEEEEEEcccc
Q 016385          332 IYDDEGIQ---------SSELIGCAQVRLCEL  354 (390)
Q Consensus       332 v~d~d~~~---------~d~~lG~~~v~l~~l  354 (390)
                      +|+....+         .+..+|.+.++|-+-
T Consensus        88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            99976543         457999999999663

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=92.01  E-value=2.1  Score=32.32  Aligned_cols=66  Identities=20%  Similarity=0.282  Sum_probs=48.1

Q ss_pred             CCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEcccc
Q 016385          281 GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL  354 (390)
Q Consensus       281 g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l  354 (390)
                      |-++-.+++.++  +..+..|.-.. -.+..|++.|.+.+.  .+.+|.|.||-.|.   ..+-|...+.|++.
T Consensus         7 ~~~eV~avLklD--n~~VgqT~Wk~-~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~---RslCav~~lrLEd~   72 (98)
T cd08687           7 GCSEVSAVLKLD--NTVVGQTQWKP-KSNQAWDQSFTLELE--RSRELEIAVYWRDW---RSLCAVKFLKLEDE   72 (98)
T ss_pred             cccceEEEEEEc--CeEEeeccccc-cccccccceeEEEee--cccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence            336778888886  34566666543 357899999999986  35689999998764   45777778888773

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=91.85  E-value=2.3  Score=35.12  Aligned_cols=56  Identities=18%  Similarity=0.390  Sum_probs=40.5

Q ss_pred             EeeeccCCC-CCCeeeeEEEEEEe--c-CCCCEEEEEEEEcCCCCCC----ceeEEEEEEcccc
Q 016385          299 KKSKTINND-LNPIWNEHFEFIVE--D-ESTQHLVVRIYDDEGIQSS----ELIGCAQVRLCEL  354 (390)
Q Consensus       299 ~kT~v~~~~-~nP~w~e~f~f~v~--~-~~~~~L~v~v~d~d~~~~d----~~lG~~~v~l~~l  354 (390)
                      ..|+...-+ .++.|||...|.+.  + +.+..|.+.+|+.+.....    ..||.+.+++-+.
T Consensus        22 ~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   22 QSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             EE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            355555444 79999999888864  3 3567999999998765444    6999999999775

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=91.58  E-value=1.2  Score=38.64  Aligned_cols=57  Identities=19%  Similarity=0.328  Sum_probs=35.5

Q ss_pred             ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcCCCC-C--CceeEEEEEEccc
Q 016385          297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQ-S--SELIGCAQVRLCE  353 (390)
Q Consensus       297 ~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d~~~-~--d~~lG~~~v~l~~  353 (390)
                      ..+.|.+...+.+|.|+|+|.+.++..  .+..|.|++++...-. +  ...+|.+.+||-+
T Consensus        59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            356778888889999999999888754  4668999999965422 1  2699999999976

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=90.01  E-value=2.2  Score=36.73  Aligned_cols=89  Identities=13%  Similarity=0.194  Sum_probs=53.1

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCc---eEeeeccCCCCCCeeeeEEEEEEe--c-CCCCEEEEEEEEcC
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDDE  336 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~v~~~~~nP~w~e~f~f~v~--~-~~~~~L~v~v~d~d  336 (390)
                      .++|+|.++..+. .+......-|+.+.+-. +.+   ..+|.....+.++.|||...|.+.  + +....|.|.+|+..
T Consensus        11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~-g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQH-GQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CEEEEEEeecccC-cCCCCceEEEEEEEEEE-CCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            4677787776332 22122233555554321 222   124444555667999998887754  3 35678999999963


Q ss_pred             CCC----------------CCceeEEEEEEccc
Q 016385          337 GIQ----------------SSELIGCAQVRLCE  353 (390)
Q Consensus       337 ~~~----------------~d~~lG~~~v~l~~  353 (390)
                      ...                ++..||.+.+.|-+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD  121 (178)
T cd08399          89 APALSSKKSAESPSSESKGKHQLLYYVNLLLID  121 (178)
T ss_pred             cCcccccccccccccccccccceEEEEEEEEEc
Confidence            211                25688889999865

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]

Probab=88.73  E-value=0.57  Score=49.31  Aligned_cols=85  Identities=12%  Similarity=0.255  Sum_probs=68.3

Q ss_pred             CCCcEEEEEEecCCCceEeeeccCCC-CCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEccccCCCcee
Q 016385          282 KSDPYAVLFVRPLPEKTKKSKTINND-LNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK  360 (390)
Q Consensus       282 ~~dpyv~v~~~~~~~~~~kT~v~~~~-~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~~~  360 (390)
                      ..++|+.+.+.  .....+|..+.+. .+|.|++.|+........ .+.+++-+.+..+-...+|.+..+...+..+...
T Consensus       137 ~~e~Ylt~~l~--~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g-~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~  213 (887)
T KOG1329|consen  137 TLENYLTVVLH--KARYRRTHVIYEFLENSRWSFSFDIGFAHKAG-YVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRI  213 (887)
T ss_pred             hccchheeeec--hhhhhchhhhhcccccchhhhhcccccccccc-EEEEeecCCccccceeEEEEeccchhhhhccccc
Confidence            37899999886  2345566666666 789999999888877654 8888988888776578999999999999888888


Q ss_pred             eEEEEcccc
Q 016385          361 DVWLKLVKD  369 (390)
Q Consensus       361 ~~w~~L~~~  369 (390)
                      +.|+++...
T Consensus       214 ~~~~~Il~~  222 (887)
T KOG1329|consen  214 GGWFPILDN  222 (887)
T ss_pred             cceeeeecc
Confidence            999998653

>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]

Probab=87.97  E-value=0.16  Score=52.30  Aligned_cols=89  Identities=16%  Similarity=0.286  Sum_probs=72.5

Q ss_pred             ccHHHHHHHHHHHhhhHHHH--HHHHHHHhHHHHHhhcC-CCccceEEEeEEecCCCCCeEeeEEEEecCC-CeEEEEEE
Q 016385           69 QKLTWLNHHLEKLWPYVNEA--ASELIKSSVEPVLEQYR-PFILSSLKFSKFTLGTVAPQFTGVSIIEDGG-SGVTMELE  144 (390)
Q Consensus        69 E~~~WlN~~l~~~Wp~~~~~--~~~~i~~~l~~~l~~~~-p~~l~~i~~~~~~lG~~~P~i~~ir~~~~~~-~~v~le~~  144 (390)
                      +.+-|+|.++.++..-+.+.  ..+...+.++.++...+ |++++.+-..+++-|+.||.|++.++..... +...++.|
T Consensus       334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~d  413 (795)
T KOG2238|consen  334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSYIEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEID  413 (795)
T ss_pred             hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchhhhhhhhhhhhhcCCccccccceeEEeeccccccCccc
Confidence            45899999999998665432  66777888888888765 7899999999999999999999999998754 44568999


Q ss_pred             EEEeeCceEEEEE
Q 016385          145 MQWDANSSIILAI  157 (390)
Q Consensus       145 ~~~~~~~~i~l~v  157 (390)
                      +.|.||..+.+..
T Consensus       414 i~y~~d~~~~i~~  426 (795)
T KOG2238|consen  414 IEYRGDLTIIIET  426 (795)
T ss_pred             eeecccccccccc
Confidence            9999986655544

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=87.54  E-value=1.8  Score=37.52  Aligned_cols=56  Identities=20%  Similarity=0.299  Sum_probs=42.3

Q ss_pred             ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcCCCC--CCceeEEEEEEcc
Q 016385          297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQ--SSELIGCAQVRLC  352 (390)
Q Consensus       297 ~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d~~~--~d~~lG~~~v~l~  352 (390)
                      ..++|.+...+.+|.|+|++.+.++..  ....|.|++++.....  .....|.+.+||-
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            367888888899999999998887643  5668899888754321  1267999999983

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=86.64  E-value=8.3  Score=33.44  Aligned_cols=57  Identities=14%  Similarity=0.278  Sum_probs=42.4

Q ss_pred             ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcCC--C-------CCCceeEEEEEEccc
Q 016385          297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEG--I-------QSSELIGCAQVRLCE  353 (390)
Q Consensus       297 ~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d~--~-------~~d~~lG~~~v~l~~  353 (390)
                      ....|.+...+.+|.|.|++.+.+.-.  ....|.|+.|+.+-  .       .....+|.+.+||-.
T Consensus        56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            356788888889999999988776533  56689999998641  1       123579999999854

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=86.50  E-value=0.37  Score=38.62  Aligned_cols=29  Identities=17%  Similarity=0.338  Sum_probs=18.8

Q ss_pred             hhhHHHHHHHHHHhhheeeehhhhhhHhh
Q 016385            4 FFGLVVGLVVGLGIIVGFVRSENARSKLR   32 (390)
Q Consensus         4 ~~g~~~g~~~gl~l~~~~~~~~~~~~~~~   32 (390)
                      +.|+++|.++|+++..+++.|..+|.++|
T Consensus        66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk   94 (122)
T PF01102_consen   66 IIGIIFGVMAGVIGIILLISYCIRRLRKK   94 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             eeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            56777777777777777766666555444

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=86.41  E-value=8.8  Score=32.74  Aligned_cols=84  Identities=18%  Similarity=0.243  Sum_probs=58.4

Q ss_pred             CCCcEEEEEEecCCCceEeeeccC--CCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEccccCCC--
Q 016385          282 KSDPYAVLFVRPLPEKTKKSKTIN--NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG--  357 (390)
Q Consensus       282 ~~dpyv~v~~~~~~~~~~kT~v~~--~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~--  357 (390)
                      +..-|+++.+.  ++.+.+|+...  .+..-.++|.|.+.+.... +.+.+++|.... ..+..|+++.+|+-.....  
T Consensus        36 ~~~~~ikl~~N--~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P-esi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~  111 (168)
T PF15625_consen   36 KTRYYIKLFFN--DKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP-ESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTS  111 (168)
T ss_pred             heeEEEEEEEC--CEEEEeeeeEecCCCeEEeccCEEEEEEecCC-CEEEEEEEEccC-ccceEEEEEEeeCCCCccccc
Confidence            45678888886  45566666543  3444567899999997754 489999999887 5789999999998554322  


Q ss_pred             ce--eeEEEEcccc
Q 016385          358 KV--KDVWLKLVKD  369 (390)
Q Consensus       358 ~~--~~~w~~L~~~  369 (390)
                      ..  ...|+.....
T Consensus       112 ~~~~~~~~~eFsS~  125 (168)
T PF15625_consen  112 TDNVPLEEYEFSSD  125 (168)
T ss_pred             ccCCceEeEEEcCC
Confidence            11  4566666543

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=86.15  E-value=4  Score=35.62  Aligned_cols=56  Identities=21%  Similarity=0.244  Sum_probs=42.1

Q ss_pred             ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcCCC----CCCceeEEEEEEcc
Q 016385          297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI----QSSELIGCAQVRLC  352 (390)
Q Consensus       297 ~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d~~----~~d~~lG~~~v~l~  352 (390)
                      ..++|-+...+.+|.|+|++.+.++..  ....|.|++++....    ......|.+.+||-
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            367788888889999999998887643  566899999875421    12357999999984

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=84.73  E-value=5.6  Score=31.18  Aligned_cols=83  Identities=18%  Similarity=0.188  Sum_probs=42.4

Q ss_pred             CceEeeeccCCCCCCeeeeEEEEEEecC-------CCCEEEEEEEEcCCCCCCceeEEEEEEccccCCCc--eeeEEEEc
Q 016385          296 EKTKKSKTINNDLNPIWNEHFEFIVEDE-------STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK--VKDVWLKL  366 (390)
Q Consensus       296 ~~~~kT~v~~~~~nP~w~e~f~f~v~~~-------~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~--~~~~w~~L  366 (390)
                      -+.+.|.++. +.+|.+|-+-.+.|...       .+..+.++++..-. ...+.+|.+++++..+.+..  .......+
T Consensus        10 fEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~~i~~~~~l   87 (107)
T PF11618_consen   10 FETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGERIHGSATL   87 (107)
T ss_dssp             ---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S--EEEEEEE
T ss_pred             eeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCceEEEEEEE
Confidence            4567788776 78999998888877533       45588999998764 34789999999999985332  23344445


Q ss_pred             ccccccCCCCeeeeEEEEE
Q 016385          367 VKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       367 ~~~~~~~~~~~~~G~i~l~  385 (390)
                      .+.     +++.-|.|...
T Consensus        88 ~g~-----~~~~~g~l~y~  101 (107)
T PF11618_consen   88 VGV-----SGEDFGTLEYW  101 (107)
T ss_dssp             -BS-----SS-TSEEEEEE
T ss_pred             ecc-----CCCeEEEEEEE
Confidence            432     33466877755

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=84.36  E-value=5.7  Score=30.61  Aligned_cols=74  Identities=18%  Similarity=0.197  Sum_probs=43.3

Q ss_pred             EEEEEeeecCCccccCCCCCCcEEEEEEecCCCc---eEeeeccCCCCCCeeeeEEEEEEe--c-CCCCEEEEEEEEcCC
Q 016385          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDDEG  337 (390)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~v~~~~~nP~w~e~f~f~v~--~-~~~~~L~v~v~d~d~  337 (390)
                      +.+.+...++.........++-|+.+.+-..+..   ...|+.+.-...+.|||...|.+.  + +.+..|.+.+|+...
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~   92 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN   92 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence            4455555555543332223578888865421211   123444444556899998888653  3 356789999999653

Outlier of C2 family.

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=82.42  E-value=4.1  Score=35.12  Aligned_cols=54  Identities=19%  Similarity=0.351  Sum_probs=40.0

Q ss_pred             EeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcCCC-----CCCceeEEEEEEccc
Q 016385          299 KKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI-----QSSELIGCAQVRLCE  353 (390)
Q Consensus       299 ~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d~~-----~~d~~lG~~~v~l~~  353 (390)
                      ++|-+..+ .+|.|+|++.+.++..  ....|.|++++.+.-     .....+|.+.+||-+
T Consensus        55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            44444444 8999999998888543  467899999996532     346789999999965

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=82.11  E-value=4.2  Score=35.07  Aligned_cols=56  Identities=13%  Similarity=0.228  Sum_probs=42.1

Q ss_pred             ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcCCCC------CCceeEEEEEEcc
Q 016385          297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQ------SSELIGCAQVRLC  352 (390)
Q Consensus       297 ~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d~~~------~d~~lG~~~v~l~  352 (390)
                      ....|.+...+.+|.|+|++.+.++-.  ....|.|++++.+-..      ....+|.+.+||-
T Consensus        54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~  117 (179)
T cd08696          54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL  117 (179)
T ss_pred             eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence            456788888899999999998877643  5568999999844211      1357999999984

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	390
1rlw_A	126	Calcium-Phospholipid Binding Domain From Cytosolic		3e-09
1bci_A	138	C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minim		4e-09
1cjy_A	749	Human Cytosolic Phospholipase A2 Length = 749		7e-09
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		6e-08
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		9e-08
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		2e-07
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		4e-07
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		6e-07
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		7e-07
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		9e-07
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		9e-07
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		2e-06
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		2e-06
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		2e-06
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		2e-06
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		2e-06
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		2e-06
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		2e-06
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		2e-06
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		3e-06
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		3e-06
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		9e-06
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		3e-05
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		4e-05
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		5e-05
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		4e-04

>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic Phospholipase A2 Length = 126

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 278 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337
           D++   DPY  LF+   P+  K+++  NND+NP+WNE FEFI++      L + + D   
Sbjct: 22  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81
Query: 338 IQSSELIGCAQVRLCELEPG 357
           +   E +G A   +  ++ G
Sbjct: 82  VM-DETLGTATFTVSSMKVG 100

>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized Average Structure Length = 138

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 278 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337
           D++   DPY  LF+   P+  K+++  NND+NP+WNE FEFI++      L + + D   
Sbjct: 37  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 338 IQSSELIGCAQVRLCELEPG 357
           +   E +G A   +  ++ G
Sbjct: 97  VM-DETLGTATFTVSSMKVG 115

>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 278 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337
           D++   DPY  LF+   P+  K+++  NND+NP+WNE FEFI++      L + + D   
Sbjct: 37  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 338 IQSSELIGCAQVRLCELEPG 357
           +   E +G A   +  ++ G
Sbjct: 97  VM-DETLGTATFTVSSMKVG 115

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
           P GTLEV LV AKGL + D +   DPY  L  R   +K+  ++ +     P WNE F F 
Sbjct: 8   PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGT--TPEWNETFIFT 65
Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRL 351
           V  E T  L  +I+D +     + +G A + L
Sbjct: 66  VS-EGTTELKAKIFDKDVGTEDDAVGEATIPL 96

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK----KSKTINNDLNPIWNEHFEFI 319
           L VK+V    L  KD+ G SDPY  L +    E  +    ++KTI   LNP WNE F F 
Sbjct: 23  LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
           V + S   L+  ++D+  +   + +G   V L  L
Sbjct: 83  V-NPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHL 116

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 254 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 313
           S  ++K VG L+VK+++A  L   D  GKSDP+ +L    L     ++ T+  +LNP WN
Sbjct: 5   SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLL---ELGNDRLQTHTVYKNLNPEWN 61
Query: 314 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           + F F ++D     L V ++D++G +  + +G   + L  +  G
Sbjct: 62  KVFTFPIKD-IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG 104

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           + + +V A+GL  KD  G SDPY  + V    +  K++KTI  +LNP+W E+F F   + 
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQV---GKTKKRTKTIYGNLNPVWEENFHFECHN- 74
Query: 324 STQHLVVRIYD-DEGIQS 340
           S+  + VR+ D D+ I+S
Sbjct: 75  SSDRIKVRVLDEDDDIKS 92

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLN 309
           ++S L  +    L+  +++AKGL   D  G +DPY  L + P   K+ K  +KT+ N  N
Sbjct: 19  EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 78
Query: 310 PIWNEHFEF---IVEDESTQHLVVRIYDDEGIQSSELIG 345
           P+WNE  ++     ED   + L + + D++    +E IG
Sbjct: 79  PVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIG 117

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLN 309
           ++S L  +    L+  +++AKGL   D  G +DPY  L + P   K+ K  +KT+ N  N
Sbjct: 17  EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 76
Query: 310 PIWNEHFEF---IVEDESTQHLVVRIYDDEGIQSSELIG 345
           P+WNE  ++     ED   + L + + D++    +E IG
Sbjct: 77  PVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIG 115

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE 321
           L V +  AK L   D  G SDPY  L + P P  E  +K+KTI + LNP WNE F F ++
Sbjct: 19  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 322 -DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
             +  + L V I+D +    ++ +G     + EL
Sbjct: 79  PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 112

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE 321
           L V +  AK L   D  G SDPY  L + P P  E  +K+KTI + LNP WNE F F ++
Sbjct: 18  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 322 -DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
             +  + L V I+D +    ++ +G     + EL
Sbjct: 78  PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 111

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE 321
           L V +  AK L   D  G SDPY  L + P P  E  +K+KTI + LNP WNE F F ++
Sbjct: 20  LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 322 -DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
             +  + L V I+D +    ++  G     + EL
Sbjct: 80  PSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSEL 113

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 271 AKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEF-IVEDESTQH 327
           AK L   D  G SDPY  L + P P  E  +K+KTI   LNP WNE F F + E +  + 
Sbjct: 40  AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRR 99
Query: 328 LVVRIYDDEGIQSSELIGCAQVRLCELE 355
           L V I+D +    ++ +G     + EL+
Sbjct: 100 LSVEIWDWDLTSRNDFMGSLSFGISELQ 127

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           +   + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           +   + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 271 AKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEF-IVEDESTQH 327
           AK L   D  G SDPY  L + P P  E  +K+KTI + LNP WNE F F + E +  + 
Sbjct: 181 AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRR 240
Query: 328 LVVRIYDDEGIQSSELIGCAQVRLCELE 355
           L V I+D +    ++ +G     + EL+
Sbjct: 241 LSVEIWDWDLTSRNDFMGSLSFGISELQ 268

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 44  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           +   + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 139

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 21  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           + + + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 81  ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 116

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 19  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           +   + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 79  ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 114

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPY--AVLFVRPLPEKTKKSKTINNDLN 309
           ++S   L   G L V +++A  L   DL G SDPY  A L       K +K+    N LN
Sbjct: 143 NFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLN 202
Query: 310 PIWNEHFEFIVEDESTQH--LVVRIYDDEGIQSSELIGCAQV 349
           P +NE   F V  ES ++  L + + D + I  +E+IG  +V
Sbjct: 203 PTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 244

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPY--AVLFVRPLPEKTKKSKTINNDLN 309
           ++S   L   G L V +++A  L   DL G SDPY  A L       K +K+    N LN
Sbjct: 142 NFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLN 201
Query: 310 PIWNEHFEFIVEDESTQH--LVVRIYDDEGIQSSELIGCAQV 349
           P +NE   F V  ES ++  L + + D + I  +E+IG  +V
Sbjct: 202 PTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIV 320
           + V+++   GL  KD++G SDPY  V    P+     + ++KTI   LNP WNE   F V
Sbjct: 22  VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV 81
Query: 321 EDESTQH-LVVRIYDDEGIQSSELIGCAQVRLCEL 354
             +  QH L+  ++D+  +   + +G   V L  L
Sbjct: 82  HPQ--QHRLLFEVFDENRLTRDDFLGQVDVPLYPL 114

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 255 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLPE--KTKKSKTINNDLNPI 311
           EL       + VK++   GL  KD++G SDPY  V    P+     + ++KTI   LNP 
Sbjct: 1   ELHNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPK 60
Query: 312 WNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
           WNE   F V  +    ++  ++D+  +   + +G   V L  L
Sbjct: 61  WNEEILFRVLPQR-HRILFEVFDENRLTRDDFLGQVDVPLYPL 102

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVE 321
           + V + +A+ L   D  G SDPY  L + P P     +K++T+   LNP+WNE F F ++
Sbjct: 22  IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 322 -DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
             +  + L V ++D +    ++ +G     + EL
Sbjct: 82  PGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSEL 115

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF---EFI 319
           TL VK+++A+ L  KD  G SDP+  +++ P  +   ++K    +LNP WNE F    F 
Sbjct: 27  TLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFP 86
Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355
            E    + L +++ D +    ++ IG   + L +++
Sbjct: 87  YEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVD 122

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
           +G L V +++A  L      GKS+PY  +    +  ++  ++TI + LNP WN + +F +
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEI---SMGSQSYTTRTIQDTLNPKWNFNCQFFI 442
Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQV 349
           +D     L + ++D +     + +G  ++
Sbjct: 443 KDLYQDVLCLTLFDRDQFSPDDFLGRTEI 471

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	390
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	5e-37
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	2e-36
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	2e-35
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-34
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	2e-34
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	8e-34
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	6e-33
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	3e-28
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	1e-26
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	4e-26
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	4e-25
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	7e-24
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-15
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	3e-23
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	4e-23
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	6e-23
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	1e-22
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	6e-22
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-21
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	7e-21
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	6e-15
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	8e-21
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-19
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	1e-19
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	2e-19
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	2e-19
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	4e-19
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	5e-19
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	6e-19
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	6e-19
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	7e-18
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	1e-17
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	2e-17
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	2e-17
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	2e-17
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-16
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	3e-16
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-15
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	5e-12
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	9e-10
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	1e-09
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	1e-09
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	3e-08
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	4e-08
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-05
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	4e-05

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  131 bits (331), Expect = 5e-37
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 7/137 (5%)

Query: 255 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPI 311
           EL       + VK++   GL  KD++G SDPY  + +         + ++KTI   LNP 
Sbjct: 1   ELHNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPK 60

Query: 312 WNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 371
           WNE   F V  +    ++  ++D+  +   + +G   V L  L     +       KD  
Sbjct: 61  WNEEILFRVLPQ-RHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFV 119

Query: 372 VQRDT---KYRGQVRIK 385
           +   +   + +G +R+K
Sbjct: 120 LHPRSHKSRVKGYLRLK 136

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  128 bits (323), Expect = 2e-36
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 10/128 (7%)

Query: 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 318
            P GTLEV LV AKGL + D +   DPY  L  R   +  K +        P WNE F F
Sbjct: 7   GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR--TQDQKSNVAEGMGTTPEWNETFIF 64

Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTK 377
            V + +T+ L  +I+D +     + +G A + L  +   G +      +VK      D +
Sbjct: 65  TVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK------DEE 117

Query: 378 YRGQVRIK 385
           Y+G++ + 
Sbjct: 118 YKGEIWVA 125

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  125 bits (316), Expect = 2e-35
 Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 9/132 (6%)

Query: 254 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 313
           S  ++K VG L+VK+++A  L   D  GKSDP+ +L +        ++ T+  +LNP WN
Sbjct: 5   SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN---DRLQTHTVYKNLNPEWN 61

Query: 314 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ 373
           + F F ++D     L V ++D++G +  + +G   + L  +  G+     LK        
Sbjct: 62  KVFTFPIKD-IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL---- 116

Query: 374 RDTKYRGQVRIK 385
            +  ++G + ++
Sbjct: 117 -EQAFKGVIYLE 127

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  123 bits (310), Expect = 1e-34
 Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 264 LEVKLVQAKGLTN---KDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
             V +++A  +T     D++   DPY  LF+   P+  K+++  NND+NP+WNE FEFI+
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
           +      L + + D   +   E +G A   +  ++ G+ K+V    
Sbjct: 65  DPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIF 109

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  123 bits (311), Expect = 2e-34
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 12/148 (8%)

Query: 244 KIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKK 300
             V  L  D      +    + V+++   GL  KD++G SDPY  + +         + +
Sbjct: 7   VEVFGLLEDE-----ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQ 61

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           +KTI   LNP WNE   F V  +    L+  ++D+  +   + +G   V L  L     +
Sbjct: 62  TKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPR 120

Query: 361 DVWLKLVKDLDVQ---RDTKYRGQVRIK 385
                  KD  +      ++ +G +R+K
Sbjct: 121 LERPYTFKDFVLHPRSHKSRVKGYLRLK 148

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  121 bits (306), Expect = 8e-34
 Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 8/133 (6%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
           G L V +  A  +  K   GK DP   +  +    + KK+K ++N+LNP+WNE  EF + 
Sbjct: 7   GMLRVIVESASNI-PKTKFGKPDPIVSVIFKD---EKKKTKKVDNELNPVWNEILEFDLR 62

Query: 321 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ-RDTK 377
               + +  L + + D E I  ++LIG A V L +L   + + +  KL+  L+ + +DT 
Sbjct: 63  GIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTG 122

Query: 378 YRGQVRIKYPPYK 390
               + I Y P  
Sbjct: 123 ATIDLVIGYDPPS 135

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score =  129 bits (325), Expect = 6e-33
 Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 248 ILPGDYSELELKPVGTLEVKLVQAKGLTNK---DLIGKSDPYAVLFVRPLPEKTKKSKTI 304
           I P  +  +E +      V +++A  +T     D++   DPY  LF+   P+  K+++  
Sbjct: 4   IDPYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHF 63

Query: 305 NNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWL 364
           NND+NP+WNE FEFI++      L + + D   +   E +G A   +  ++ G+ K+V  
Sbjct: 64  NNDINPVWNETFEFILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPF 122

Query: 365 K 365
            
Sbjct: 123 I 123

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  108 bits (270), Expect = 3e-28
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 9/134 (6%)

Query: 254 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 313
           S   L     L++ ++ AK   NK       PY  + V     ++KK++  NN  +P W 
Sbjct: 28  SMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG---QSKKTEKCNNTNSPKWK 84

Query: 314 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKLVKDL 370
           +    IV   S   L  R++  + ++S  L+G A + + E       K+++V + L    
Sbjct: 85  QPLTVIVTPVSK--LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGG 142

Query: 371 DVQRDTKYRGQVRI 384
           D +  T+  G + I
Sbjct: 143 D-KEPTETIGDLSI 155

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score =  102 bits (255), Expect = 1e-26
 Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           + + ++ AK L  KD     DP+A + V     +   + T+ N L+P WN+H++  V   
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDG-SGQCHSTDTVKNTLDPKWNQHYDLYVGKT 65

Query: 324 STQHLVVRIYDDEGI---QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRG 380
               + + +++ + I   Q +  +GC ++    +   K        +  L+       RG
Sbjct: 66  --DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRG 123

Query: 381 QVRIK 385
           Q+ + 
Sbjct: 124 QIVVS 128

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  101 bits (253), Expect = 4e-26
 Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 20/143 (13%)

Query: 254 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 313
            +   K    + + +V A+GL  KD  G SDPY  + V    +  K++KTI  +LNP+W 
Sbjct: 9   LDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVG---KTKKRTKTIYGNLNPVWE 65

Query: 314 EHFEFIVEDESTQHLVVRIYD-----------DEGIQSSELIGCAQVRLCELEPGKVKDV 362
           E+F F   + S+  + VR+ D               +S + +G   + +  L      DV
Sbjct: 66  ENFHFECHN-SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE--MDV 122

Query: 363 WLKLVKDLDVQRDTKYRGQVRIK 385
           W  L K       +   G +R+ 
Sbjct: 123 WYNLDK---RTDKSAVSGAIRLH 142

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 98.6 bits (246), Expect = 4e-25
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEFI 319
             L+  +++AKGL   D  G +DPY  L + P   K+ K  +KT+ N  NP+WNE  ++ 
Sbjct: 29  SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 88

Query: 320 V---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
               ED   + L + + D++    +E IG  +  L +L+  + K+  + L +
Sbjct: 89  GITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 99.1 bits (247), Expect = 7e-24
 Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 2/129 (1%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
             L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V 
Sbjct: 19  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 78

Query: 322 DE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYR 379
               + + LV+ +YD +     ++IG  +V +  ++ G V + W  L      +++    
Sbjct: 79  YSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGD 138

Query: 380 GQVRIKYPP 388
               ++Y P
Sbjct: 139 ICFSLRYVP 147

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 74.8 bits (184), Expect = 2e-15
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 6/116 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
           G L V +++AK L   D+ G SDPY  + +    ++ KK KT    N LNP +NE F F 
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ 373
           V  E      +VV + D + I  ++ IG  +V +     G     W  ++ +    
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIG--KVFVGYNSTGAELRHWSDMLANPRRP 263

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 93.2 bits (232), Expect = 3e-23
 Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 3/108 (2%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
            TL VK+++A+ L  KD  G SDP+  +++ P  +   ++K    +LNP WNE F F   
Sbjct: 26  STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85

Query: 321 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             E    + L +++ D +    ++ IG   + L +++  +++  W  L
Sbjct: 86  PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 93.2 bits (232), Expect = 4e-23
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
             L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 321 -EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             +   + LV+ +YD +     ++IG  +V +  ++ G V + W  L
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 93.1 bits (231), Expect = 6e-23
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 18/134 (13%)

Query: 247 PILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGK----------SDPYAVLFVRPLPE 296
            +  G  S   +K  G L V++ +A GL       +           DPY  + V     
Sbjct: 14  LVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQ--V 71

Query: 297 KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-- 354
           +  ++ T      P +NE F   V D    HL + ++ +  +     +    ++  EL  
Sbjct: 72  RVGQTSTKQKTNKPTYNEEFCANVTD--GGHLELAVFHETPLGYDHFVANCTLQFQELLR 129

Query: 355 --EPGKVKDVWLKL 366
                   + W+ L
Sbjct: 130 TTGASDTFEGWVDL 143

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 92.5 bits (230), Expect = 1e-22
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
             L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V 
Sbjct: 42  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 101

Query: 321 -EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             +   + LV+ +YD +     ++IG  +V +  ++ G V + W  L
Sbjct: 102 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 148

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 90.1 bits (224), Expect = 6e-22
 Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
             L V +  AK L   D  G SDPY  L + P P+    +K+KTI   LNP WNE F F 
Sbjct: 31  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90

Query: 320 V-EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 369
           + E +  + L V I+D +    ++ +G     + EL+   V   W KL+  
Sbjct: 91  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDG-WFKLLSQ 140

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 91.1 bits (226), Expect = 7e-21
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 5/131 (3%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
             L V+++QA  L  KD  G SDPY  +++ P  +K  ++K     LNPI+NE F+F V 
Sbjct: 20  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 79

Query: 321 -EDESTQHLVVRIYDDEGIQSSELIGCAQV--RLCELEPGKVKDVWLKLVKDLDVQRDTK 377
             + + + L   +YD +     +LIG   +   L   E    + +W  +  +   ++   
Sbjct: 80  LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDI-LEGGSEKADL 138

Query: 378 YRGQVRIKYPP 388
                 + Y P
Sbjct: 139 GELNFSLCYLP 149

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 73.7 bits (181), Expect = 6e-15
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
           G L V +++A  L   DL G SDPY    +     + KK KT    N LNP +NE   F 
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQV 349
           V  E      L + + D + I  +E+IG  +V
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 86.4 bits (214), Expect = 8e-21
 Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 17/121 (14%)

Query: 259 KPVGTLEVKLVQAKGLTNKDLIGK-----------SDPYAVLFVRPLPEKTKKSKTINND 307
              G L++K+ +A  L       +            DPY  L V     +  ++ T    
Sbjct: 3   VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD--SRIGQTATKQKT 60

Query: 308 LNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLK 365
            +P W++ F   V +   + + + ++ D  I   + +    ++  EL     +  + W+ 
Sbjct: 61  NSPAWHDEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWID 118

Query: 366 L 366
           L
Sbjct: 119 L 119

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 83.6 bits (207), Expect = 1e-19
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 6/108 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK-KSKTINNDLNPIWNEHFEFIV 320
             L V  ++A      +  G  D Y    V       + ++      L+  W E     +
Sbjct: 26  AELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82

Query: 321 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             E+  T  L + +   +      + G  ++ L           W +L
Sbjct: 83  AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 83.9 bits (208), Expect = 1e-19
 Identities = 21/122 (17%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 262 GTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF 318
            +L V + +   L   D    +S+PY   ++ P   +  K KT    + +NP+++E   +
Sbjct: 23  QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82

Query: 319 IV--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDT 376
            +     + + L   ++       +  +G A++++   +  K  D  L L   +  + + 
Sbjct: 83  EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESEG 142

Query: 377 KY 378
            +
Sbjct: 143 HH 144

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 83.6 bits (207), Expect = 2e-19
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 6/112 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT---KKSKTINNDLNPIWNEHFEF 318
               + ++Q   L+             + V P  E T    +++ ++     ++NE F  
Sbjct: 43  KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102

Query: 319 IVEDE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-GKVKDVWLKLV 367
            +       + L V +   +     E +G AQ+ L E+   G+    W  L+
Sbjct: 103 SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 83.7 bits (207), Expect = 2e-19
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 5/109 (4%)

Query: 262 GTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF 318
           G LEV++++A+ LT K        PY  +++        K KT      L+P++ +   F
Sbjct: 30  GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89

Query: 319 IVEDESTQHLVVRIYDDEG-IQSSELIGCAQVRLCELEPGKVKDVWLKL 366
               +  + L V ++ D G +     +G AQ+ L EL+   +   W KL
Sbjct: 90  DESPQG-KVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 81.9 bits (203), Expect = 4e-19
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
           GTL + ++  K L  +D     +PY   ++ P   KT  +K+K      NP +NE   + 
Sbjct: 20  GTLFIMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYS 78

Query: 320 V---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
               E    + L + +   E ++ +  +G   + L +    K    W +L
Sbjct: 79  GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQL 128

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 81.6 bits (202), Expect = 5e-19
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
               V + +A+GL   D     SDPY  + + P  +   K++ +   L+P ++E F F  
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 321 ---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK-DVWLKLVK 368
                     L   I   +     ++IG   + L  +E  + K  +  +++ 
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 81.7 bits (202), Expect = 6e-19
 Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 14/119 (11%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP-----------LPEKTKKSKTINNDLNP 310
           G L + ++QA+ L  +D  G SDP+  +++ P             E  +++K +   LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 311 IWNEHFEFIV---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
            WN+   +     E    + L V ++D +   S++ +G   + L           W  L
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 81.7 bits (202), Expect = 6e-19
 Identities = 23/114 (20%), Positives = 51/114 (44%), Gaps = 9/114 (7%)

Query: 262 GTLEVKLVQAKGL-------TNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNE 314
             L V++++A+ L        ++  +  S+PY  + + P  + +K++        P++ E
Sbjct: 26  NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85

Query: 315 HFEFIV--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
            + F +   +   + L++ + D +      +IG   V LCE++  K    W  L
Sbjct: 86  RYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKAL 139

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 78.5 bits (194), Expect = 7e-18
 Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
            ++ V +++A+ L   D+ G SDPY  +++    ++ +K KT     +LNPI+NE F F 
Sbjct: 16  NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75

Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           +  E  +   +++ + D + +  +++IG   +        
Sbjct: 76  IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGE 115

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 77.8 bits (192), Expect = 1e-17
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 7/114 (6%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
             L V +   + L        SDPY  +++ P   ++ + KT      LNP++++ F+F 
Sbjct: 24  NKLIVVVHACRNLIAFS-EDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS 82

Query: 320 V--EDESTQHLVVRIYDDEGIQSSE--LIGCAQVRLCELEPGKVKDVWLKLVKD 369
           V   +   + L V + +  G  S +  L+G   V L   E  K    W  L +D
Sbjct: 83  VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 77.3 bits (191), Expect = 2e-17
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
             L V ++ AK L +++     +PY  ++  P       +++KT+   L P WN+ F + 
Sbjct: 18  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77

Query: 320 V---EDESTQHLVVRIYDDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKL 366
                +   + L + ++D   +  + SE +G   + L           W KL
Sbjct: 78  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 128

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
             L V ++ AK L +++     +PY  ++  P       +++KT+   L P WN+ F + 
Sbjct: 21  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80

Query: 320 V---EDESTQHLVVRIYDDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKL 366
                +   + L + ++D   +  + SE +G   + L           W KL
Sbjct: 81  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 131

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF- 318
             L + +++ KGL +K   G  DPY  + + P   + +  KT  + +  +P ++EHF F 
Sbjct: 27  RVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP 85

Query: 319 IVEDESTQHLVVRIYDDEGIQ-SSELIGCAQVRLCELE-PGKVKDVWLKL 366
           + E++  + L+V +++       S LIGC    +  L  P K    W  L
Sbjct: 86  VQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYL 135

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 6/114 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
           G L V +++   L   D  G SDP+  L+++P   K  K KT      LNP +NE F + 
Sbjct: 37  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 371
           +   D + + L + ++D +  +S++ IG  Q+ +     G+    W + +K+ D
Sbjct: 97  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKD 148

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 74.4 bits (183), Expect = 3e-16
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 4/100 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
           G L V +++AK L   D+ G SDPY  + +    ++ KK KT    N LNP +NE F F 
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 320 VEDE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           V  E      +VV + D + I  ++ IG   V        
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
            TL V +++A+ L   D+ G SDPY  + +    ++  K KT       N ++NE F F 
Sbjct: 30  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89

Query: 320 VEDE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
           +  E      +   + D E    +E+IG  ++ L     G     W ++  
Sbjct: 90  IPCESLEEISVEFLVLDSERGSRNEVIG--RLVLGATAEGSGGGHWKEICD 138

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 66.5 bits (161), Expect = 5e-12
 Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 14/135 (10%)

Query: 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF- 318
            +  L V   +A+ L        +D Y  +F      +  ++  + N+ NP W +  +F 
Sbjct: 392 GLAHLVVSNFRAEHLWGDYTT-ATDAYLKVF---FGGQEFRTGVVWNNNNPRWTDKMDFE 447

Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK-----DLDVQ 373
            V   +   L V+++D +     +L+G           G   +V  +L           +
Sbjct: 448 NVLLSTGGPLRVQVWDADYGWDDDLLGSCDR---SPHSG-FHEVTCELNHGRVKFSYHAK 503

Query: 374 RDTKYRGQVRIKYPP 388
                 G   ++Y P
Sbjct: 504 CLPHLTGGTCLEYAP 518

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 55.4 bits (133), Expect = 9e-10
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 15/118 (12%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
             L V + +AK    ++   K + Y  L V+ +   T   +       P W + F F + 
Sbjct: 5   SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVRG----SQPSWEQDFMFEIN 57

Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL----EPGKVKDVWLKLVKDLDVQRD 375
                 L V ++ ++G+    ++G   + L  +    E G  +  WL L     +   
Sbjct: 58  RLDLG-LTVEVW-NKGLIWDTMVGTVWIPLRTIRQSNEEGPGE--WLTLDSQAIMADS 111

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 23/108 (21%), Positives = 49/108 (45%), Gaps = 14/108 (12%)

Query: 253 YSELELKPVGT---LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLN 309
           +    L P G+   L V L     L      G++D  A +  R    ++  S+ + N  +
Sbjct: 9   HHSSGLVPRGSHMALIVHLKTVSELR-----GRADRIAKVTFR---GQSFYSRVLENCED 60

Query: 310 PI-WNEHFEFIVED--ESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
              ++E F + V    +  + L ++I++   + S++LIG  ++ L ++
Sbjct: 61  VADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKV 108

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 58.5 bits (140), Expect = 1e-09
 Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 9/105 (8%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVL-FVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
            L++ +++A+ L  K        Y  L     L  +T       +     W EHFEF   
Sbjct: 12  VLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL 66

Query: 322 DESTQ---HLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVW 363
                   HL            +  +G   V +  L      + W
Sbjct: 67  PAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQW 111

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 51.5 bits (123), Expect = 3e-08
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 15/118 (12%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
             L V + +AK    ++   K + Y  L V+ +   T   +       P W + F F + 
Sbjct: 14  SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTTIAVRG----SQPSWEQDFMFEIN 66

Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL----EPGKVKDVWLKLVKDLDVQRD 375
                 L V ++ ++G+    ++G   + L  +    E G  +  WL L     +   
Sbjct: 67  RLDL-GLTVEVW-NKGLIWDTMVGTVWIPLRTIRQSNEEGPGE--WLTLDSQAIMADS 120

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 54.1 bits (129), Expect = 4e-08
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVR----PLPEKTKKSKTI-NNDLNPIWNEHFE 317
            L V+++  + L   +    S     + V          ++++  I NN  NP W+  FE
Sbjct: 498 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 557

Query: 318 FIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           F V       +   + D +    ++ IG + +    L+ G
Sbjct: 558 FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG 597

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 24/119 (20%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 316
           +   +G L V +++A  L      GKS+PY  +    +  ++  ++TI + LNP WN + 
Sbjct: 382 KTSGIGRLMVHVIEATELKACKPNGKSNPYCEI---SMGSQSYTTRTIQDTLNPKWNFNC 438

Query: 317 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQR 374
           +F ++D     L + ++D +     + +G  ++ + ++    + K    + +   +V  
Sbjct: 439 QFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPT 497

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 55/431 (12%), Positives = 110/431 (25%), Gaps = 129/431 (29%)

Query: 37  TTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSS 96
           T +A          K     +F   W+   +      +   L+KL   ++   +     S
Sbjct: 164 TWVAL---DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 97  VEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDAN------ 150
                       + S++     L    P    + ++ +    V        +A       
Sbjct: 221 SNI------KLRIHSIQAELRRLLKSKPYENCLLVLLN----V-------QNAKAWNAFN 263

Query: 151 -SSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKL 209
            S  IL + TR         +   F          L                 +     L
Sbjct: 264 LSCKIL-LTTR-------FKQVTDFLSAATTTHISLDHHSMTLT-------PDEVKSLLL 308

Query: 210 KVVGGDISTIPGLSDS--------IEATIHDAIEDSITWP----------VRKIVPIL-P 250
           K +      +P    +        I  +I D +     W           +   + +L P
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 251 GDYSEL--ELK--------PVGTLEV---------------KLVQAKGLTNKDLIGKSDP 285
            +Y ++   L         P   L +               KL +   L  K    K   
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQ--PKEST 425

Query: 286 YAV-----LFVRPLPEKTKKSKTI-----------NNDLNPIWNE---------HFEFIV 320
            ++          L  +    ++I           ++DL P + +         H + I 
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 321 EDESTQHLVVRIY-DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYR 379
             E    L   ++ D   ++        ++R           + L  ++ L       Y+
Sbjct: 486 HPERMT-LFRMVFLDFRFLE-------QKIRHDSTAWNASGSI-LNTLQQLK-----FYK 531

Query: 380 GQVRIKYPPYK 390
             +    P Y+
Sbjct: 532 PYICDNDPKYE 542

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 42.6 bits (99), Expect = 4e-05
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 7/33 (21%)

Query: 201 EK---KKLDFKLKVVGGDISTIPGLSDSIEATI 230
           EK   KKL   LK+   D  + P L  +I+AT+
Sbjct: 18  EKQALKKLQASLKLYADD--SAPAL--AIKATM 46

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B Length = 799

 Score = 45.0 bits (105), Expect = 4e-05
 Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 15/115 (13%)

Query: 250 PGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP-----EKTKKSKTI 304
           P     +++    TL + ++  + L+ +        Y  + +  LP         K    
Sbjct: 666 PFSVDRIDVVVATTLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPS 721

Query: 305 NNDLNPIWNEH-FEFI-VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
            N +NP+W E  F F  +       L V + ++     ++ +G   + +  L  G
Sbjct: 722 TNSINPVWKEEPFVFEKILMPELASLRVAVMEE----GNKFLGHRIIPINALNSG 772

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	390
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.88
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.87
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.87
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.87
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.85
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.85
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.85
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.85
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.84
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.83
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.83
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.83
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.83
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.82
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.82
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.82
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.8
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.8
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.79
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.79
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.79
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.79
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.79
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.79
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.79
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.78
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.78
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.78
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.78
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.77
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.77
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.76
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.75
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.74
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.72
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.72
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.7
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.67
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.66
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.64
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.63
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.63
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.56
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.54
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.5
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.37
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.18
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.18
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.16
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.0
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.87
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	94.4
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	91.09
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	87.06
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	82.02

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.88  E-value=8e-22  Score=162.72  Aligned_cols=122  Identities=34%  Similarity=0.589  Sum_probs=109.1

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccC-CCCCCeeeeEEEEEEecCCCCEEEEEEEEcCC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~  337 (390)
                      .+.|.|+|+|++|++|+..+..+.+||||++++.   .+.++|++++ ++.||.|||+|.|.+.+ ..+.|.|+|||++.
T Consensus         7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~   82 (136)
T 1wfj_A            7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDV   82 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESS---SCEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSS
T ss_pred             CCcEEEEEEEEeccCCCCcccCCCcCceEEEEEC---CccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCC
Confidence            5889999999999999999988999999999987   4568999998 89999999999999987 46799999999999


Q ss_pred             CCCCceeEEEEEEcccc-CCCceeeEEEEcccccccCCCCeeeeEEEEE--EeecC
Q 016385          338 IQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPPYK  390 (390)
Q Consensus       338 ~~~d~~lG~~~v~l~~l-~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p~~  390 (390)
                      +++|++||++.+++.++ ..+...+.|++|.+      +++..|+|+++  |.|..
T Consensus        83 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~------~~~~~G~i~l~l~~~p~~  132 (136)
T 1wfj_A           83 GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK------DEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             CTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE------TTEEEEEEEEEEEEEECC
T ss_pred             CCCCceEEEEEEEHHHhccCCCCCcEEEEeec------CCccCEEEEEEEEEEeCC
Confidence            99999999999999998 55666789999972      56789999999  98863

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=2.5e-21  Score=160.54  Aligned_cols=126  Identities=29%  Similarity=0.490  Sum_probs=107.6

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC---CCCEEEEEEEEc
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYDD  335 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~---~~~~L~v~v~d~  335 (390)
                      ...|.|+|+|++|++|+..+. +.+||||++++.   .++++|+++++++||.|||+|.|.+..+   ....|.|+|||+
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~   79 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFK---DEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF   79 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECS---SCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred             CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEEC---CEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence            467899999999999999998 999999999997   5679999999999999999999999754   457999999999


Q ss_pred             CCCCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE--Eeec
Q 016385          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPPY  389 (390)
Q Consensus       336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p~  389 (390)
                      |..++|++||++.+++.++..+...+.|+++.+-.. .++....|+|+++  |.|-
T Consensus        80 d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~-~~~~~~~G~l~l~~~~~p~  134 (140)
T 2dmh_A           80 ETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLN-EKGQDTGATIDLVIGYDPP  134 (140)
T ss_dssp             TCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEEC-TTCCEEEEEEEEEEEECCC
T ss_pred             CCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccC-CCCCCCCCEEEEEEEEECC
Confidence            999999999999999999988888899998332111 1234567999998  8773

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.87  E-value=3e-21  Score=157.07  Aligned_cols=116  Identities=27%  Similarity=0.540  Sum_probs=103.1

Q ss_pred             eeEEEEEEeeecCCcc---ccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCC
Q 016385          261 VGTLEVKLVQAKGLTN---KDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~---~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~  337 (390)
                      .|.|+|+|++|++|+.   .+..|.+||||++++.+.+.+.++|+++++++||.|||+|.|.+.......|.++|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            5899999999999998   4667899999999998554578999999999999999999999976777899999999998


Q ss_pred             CCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      . +|++||++.+++.++..+...+.|++|.+        ...|+|+++
T Consensus        82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~--------~~~g~i~~~  120 (126)
T 1rlw_A           82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQ--------VTEMVLEMS  120 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEETT--------TEEEEEEEE
T ss_pred             C-CCceeEEEEEEHHHccCCCcEEEEEEcCC--------CceEEEEEE
Confidence            7 49999999999999999999999999953        467888876

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.87  E-value=2.6e-21  Score=162.94  Aligned_cols=127  Identities=26%  Similarity=0.489  Sum_probs=102.2

Q ss_pred             ccceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC---ceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEE
Q 016385          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD  334 (390)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d  334 (390)
                      ....|.|+|+|++|++|+.+|..|.+||||++++.+...   +.++|+++++++||.|||+|.|.+.+. ...|.++|||
T Consensus        16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d   94 (153)
T 3b7y_A           16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFD   94 (153)
T ss_dssp             CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEE
T ss_pred             CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEE
Confidence            367899999999999999999889999999999984332   578999999999999999999999765 5699999999


Q ss_pred             cCCCCCCceeEEEEEEccccCCCcee------eEEEEcccccccCCCCeeeeEEEEE--Eee
Q 016385          335 DEGIQSSELIGCAQVRLCELEPGKVK------DVWLKLVKDLDVQRDTKYRGQVRIK--YPP  388 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~~~~------~~w~~L~~~~~~~~~~~~~G~i~l~--y~p  388 (390)
                      ++..++|++||++.+++.++..+...      ..|++|.+..   ...+..|+|+++  |.|
T Consensus        95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS---HKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSS---TTCCCCSEEEEEEEECC
T ss_pred             CCCCcCCCeeEEEEEEHHHcccCCCccccccccccccccccc---CCCCcceEEEEEEEEeC
Confidence            99999999999999999998765432      5999997532   234678999999  877

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.85  E-value=3.4e-20  Score=155.18  Aligned_cols=118  Identities=31%  Similarity=0.601  Sum_probs=102.8

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~  338 (390)
                      ...|.|+|+|++|++|+.+|..|.+||||+++++   .+.++|+++++++||.|||+|.|.+.++ .+.|.++|||+|..
T Consensus        14 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~   89 (148)
T 3kwu_A           14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVG---KTKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDD   89 (148)
T ss_dssp             -CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEET---TEEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCS
T ss_pred             ccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEEC---CEEEECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCC
Confidence            4579999999999999999999999999999996   6789999999999999999999999876 46999999999985


Q ss_pred             -----------CCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          339 -----------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       339 -----------~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                                 ++|++||++.+++.++  ....+.|++|.+..   .....+|+|+++
T Consensus        90 ~~~~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~---~~~~~~G~i~l~  142 (148)
T 3kwu_A           90 IKSRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRT---DKSAVSGAIRLH  142 (148)
T ss_dssp             HHHHHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSS---TTCCCCCEEEEE
T ss_pred             ccccccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCC---CCCCCceEEEEE
Confidence                       7899999999999998  34678999997532   234467999988

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.85  E-value=6.2e-21  Score=156.78  Aligned_cols=119  Identities=28%  Similarity=0.551  Sum_probs=104.6

Q ss_pred             ccceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCC
Q 016385          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (390)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~  337 (390)
                      ..+.|.|+|+|++|++|+.++..|.+||||++++.   .+.++|+++++++||.|||+|.|.+.+. .+.|.++|||++.
T Consensus         9 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~d~   84 (133)
T 2ep6_A            9 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELG---NDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDG   84 (133)
T ss_dssp             CCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET---TEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEET
T ss_pred             cCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEEC---CEEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEECCC
Confidence            46899999999999999999989999999999997   4678999999999999999999999865 5689999999999


Q ss_pred             CCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      .++|++||++.+++.++..+.  ..|++|....   .+....|+|+++
T Consensus        85 ~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~---~~~~~~G~i~l~  127 (133)
T 2ep6_A           85 DKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKD---LEQAFKGVIYLE  127 (133)
T ss_dssp             TEEEEECCBCEEEGGGCCSSC--CEECCCBCSC---TTSCCSSEEEEE
T ss_pred             CCCCCeeEEEEEEHHHccCCC--ceEEEeecCC---CCCccceEEEEE
Confidence            888999999999999997654  5899997532   134678999988

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.85  E-value=2.4e-20  Score=160.85  Aligned_cols=127  Identities=26%  Similarity=0.500  Sum_probs=99.7

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC---ceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEc
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD  335 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~  335 (390)
                      ...|.|+|+|++|++|+.++..|.+||||++++.....   ++++|+++++++||.|||+|.|.+... .+.|.|+|||+
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~L~~~V~d~   83 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ-RHRILFEVFDE   83 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT-TCEEEEEEEEC
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC-CCEEEEEEEEC
Confidence            46899999999999999999899999999999984332   578999999999999999999999754 56999999999


Q ss_pred             CCCCCCceeEEEEEEccccCCCcee-e-----EEEEcccccccCCCCeeeeEEEEE--Eeec
Q 016385          336 EGIQSSELIGCAQVRLCELEPGKVK-D-----VWLKLVKDLDVQRDTKYRGQVRIK--YPPY  389 (390)
Q Consensus       336 d~~~~d~~lG~~~v~l~~l~~~~~~-~-----~w~~L~~~~~~~~~~~~~G~i~l~--y~p~  389 (390)
                      +.+++|++||++.++|.++..+... +     .|++|....   ..++..|+|+++  |.|.
T Consensus        84 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           84 NRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS---HKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             C----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS---TTCCCCSEEEEEEEECC-
T ss_pred             CCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC---CCCccCEEEEEEEEEEeC
Confidence            9999999999999999999765433 2     799997532   245578999999  8873

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.85  E-value=5.4e-21  Score=160.74  Aligned_cols=113  Identities=23%  Similarity=0.347  Sum_probs=98.1

Q ss_pred             cceeEEEEEEeeecCCccccC----------CCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDL----------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHL  328 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~----------~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L  328 (390)
                      ...|.|+|+|++|++|+++|.          .|.+||||++.++  +.+..+|+++++|+||.|||+|.|.+.+  .+.|
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~--~~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L  101 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD--QVRVGQTSTKQKTNKPTYNEEFCANVTD--GGHL  101 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEEC--CEeeEEeeecCCCCCCccCcEEEEEcCC--CCEE
Confidence            678999999999999998873          2679999999996  2345799999999999999999999975  3589


Q ss_pred             EEEEEEcCCCCCCceeEEEEEEccccCCC----ceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          329 VVRIYDDEGIQSSELIGCAQVRLCELEPG----KVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       329 ~v~v~d~d~~~~d~~lG~~~v~l~~l~~~----~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      .++|||+|.+++|++||++.++++++..+    ...+.|++|.+          .|+|+++
T Consensus       102 ~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~----------~G~i~l~  152 (157)
T 2fk9_A          102 ELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP----------EGKVFVV  152 (157)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS----------SCEEEEE
T ss_pred             EEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC----------CcEEEEE
Confidence            99999999999999999999999998644    67899999952          6888876

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.84  E-value=2e-20  Score=154.38  Aligned_cols=115  Identities=20%  Similarity=0.356  Sum_probs=98.3

Q ss_pred             ceeEEEEEEeeecCCccccCCCC-----------CCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEE
Q 016385          260 PVGTLEVKLVQAKGLTNKDLIGK-----------SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHL  328 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~-----------~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L  328 (390)
                      ..|.|+|+|++|++|+++|..++           +||||+++++  +.+..+|+++++++||.|||+|.|.+.+.  +.|
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~--~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L   79 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD--DSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKI   79 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEEC--CeEeeeeeEECCCcCCccCCEEEEEecCC--CEE
Confidence            56999999999999998886544           9999999986  23457899999999999999999999765  699


Q ss_pred             EEEEEEcCCCCCCceeEEEEEEccccCCC--ceeeEEEEcccccccCCCCeeeeEEEEE--Eee
Q 016385          329 VVRIYDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPP  388 (390)
Q Consensus       329 ~v~v~d~d~~~~d~~lG~~~v~l~~l~~~--~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p  388 (390)
                      .++|||+|..++|++||++.+++.++..+  ...+.|++|.          +.|+|+++  |.+
T Consensus        80 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~----------~~G~i~l~l~~~~  133 (136)
T 1gmi_A           80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE----------PEGKVYVIIDLSG  133 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB----------SSCEEEEEEEEEE
T ss_pred             EEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC----------CCeEEEEEEEEEe
Confidence            99999999999999999999999998764  3458999984          26888887  654

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.83  E-value=3.9e-20  Score=153.88  Aligned_cols=110  Identities=31%  Similarity=0.504  Sum_probs=100.3

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDE  336 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d  336 (390)
                      ...|.|+|+|++|++|+.++..+.+||||++++.+.+.++++|++++++.||.|||+|.|.+...  ....|.|+|||++
T Consensus        31 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  110 (143)
T 3f04_A           31 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  110 (143)
T ss_dssp             TTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCC
Confidence            57789999999999999999889999999999976667789999999999999999999998643  4579999999999


Q ss_pred             CCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      .+++|++||++.+++.++..+...+.|++|.+
T Consensus       111 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          111 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            99999999999999999999888999999964

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=3.3e-20  Score=153.96  Aligned_cols=111  Identities=26%  Similarity=0.457  Sum_probs=99.4

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEec---CCCCEEEEEEEEc
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIYDD  335 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~---~~~~~L~v~v~d~  335 (390)
                      ...+.|+|+|++|++|+.++..+.+||||++++.+.+.+.++|+++++++||.|||+|.|.+..   .....|.|+|||+
T Consensus        23 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~  102 (141)
T 2d8k_A           23 FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDY  102 (141)
T ss_dssp             SSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEEC
T ss_pred             CCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEEC
Confidence            4678999999999999999989999999999998666678999999999999999999998532   2357899999999


Q ss_pred             CCCCCCceeEEEEEEccccCCCceeeEEEEcccc
Q 016385          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (390)
Q Consensus       336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~  369 (390)
                      +.+++|++||++.+++.++..+...+.|++|.+.
T Consensus       103 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  136 (141)
T 2d8k_A          103 DRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS  136 (141)
T ss_dssp             CSSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred             CCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence            9998999999999999999888888999999763

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.83  E-value=6.1e-20  Score=154.41  Aligned_cols=110  Identities=31%  Similarity=0.504  Sum_probs=99.8

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDE  336 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d  336 (390)
                      ...+.|+|+|++|++|+..|..+.+||||++++.+.+.+.++|+++++++||.|||+|.|.+...  ....|.|+|||++
T Consensus        39 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  118 (152)
T 1rsy_A           39 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  118 (152)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECC
Confidence            46789999999999999999889999999999986666789999999999999999999988643  4579999999999


Q ss_pred             CCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      .+++|++||++.+++.++..+...++|++|.+
T Consensus       119 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  150 (152)
T 1rsy_A          119 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  150 (152)
T ss_dssp             SSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence            99899999999999999988888899999964

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.83  E-value=8.4e-20  Score=149.78  Aligned_cols=121  Identities=21%  Similarity=0.440  Sum_probs=100.7

Q ss_pred             eeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCC
Q 016385          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~  340 (390)
                      ...|+|+|++|++|+++|..|.+||||++++.+. .+.++|+++++++||.|||+|.|.+.+..  .|.++|||++..++
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~l~~~v~d~d~~~~   80 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS-GQCHSTDTVKNTLDPKWNQHYDLYVGKTD--SITISVWNHKKIHK   80 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT-CCEEECCCCSSCSSCEEEEEEEEEEETTC--CEEEEEEEGGGTTS
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC-CceEECCccCCCCCCCccCEEEEEeCCCC--EEEEEEEECCCCCC
Confidence            4689999999999999999999999999999743 47899999999999999999999997653  59999999998876


Q ss_pred             ---CceeEEEEEEcccc-CCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          341 ---SELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       341 ---d~~lG~~~v~l~~l-~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                         |++||++.++++++ ..+.....|++|.... .....+..|+|+++
T Consensus        81 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~-~~~~~~~~G~i~v~  128 (132)
T 3pyc_A           81 KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLN-PSDTDAVRGQIVVS  128 (132)
T ss_dssp             STTTTEEEEEEECHHHHHHHTTSCCEEEECBCSS-TTCCCCCCSEEEEE
T ss_pred             CCCCCceEEEEEeHHHhhcccccCcEEEeeeecC-CCCCCceeEEEEEE
Confidence               89999999999888 3334456889997632 12234668999987

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.82  E-value=1.1e-19  Score=149.59  Aligned_cols=109  Identities=20%  Similarity=0.352  Sum_probs=96.4

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecC--CCceEeeeccCCCCCCeeeeEEEEE-EecC--CCCEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVRIY  333 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~~~nP~w~e~f~f~-v~~~--~~~~L~v~v~  333 (390)
                      ...|.|.|+|++|++|+. +..|.+||||++++.+.  ...+++|+++++++||.|||+|.|. +...  ....|.|+||
T Consensus        17 ~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~   95 (134)
T 2b3r_A           17 YRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVL   95 (134)
T ss_dssp             EETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEE
T ss_pred             ecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEE
Confidence            457899999999999997 77889999999999654  2467899999999999999999999 7532  4579999999


Q ss_pred             EcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      |++.++++++||++.+++.++..+...+.|++|.+
T Consensus        96 d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~  130 (134)
T 2b3r_A           96 SAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA  130 (134)
T ss_dssp             ECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred             ECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence            99999999999999999999988888899999964

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.82  E-value=2.1e-20  Score=157.58  Aligned_cols=109  Identities=17%  Similarity=0.221  Sum_probs=96.1

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC---CceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  333 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~  333 (390)
                      ...|.|+|+|++|++|+++|..|.+||||++++.+..   ..++||+++++|+||.|||+|.|.+...  ....|.|+||
T Consensus        40 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~  119 (155)
T 2z0u_A           40 EKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVC  119 (155)
T ss_dssp             TTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEE
T ss_pred             CCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEE
Confidence            4678999999999999999999999999999998532   2378999999999999999999998643  3568999999


Q ss_pred             EcCCCCCCceeEEEEEEccccCC-CceeeEEEEcc
Q 016385          334 DDEGIQSSELIGCAQVRLCELEP-GKVKDVWLKLV  367 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v~l~~l~~-~~~~~~w~~L~  367 (390)
                      |+|.++++++||++.+++.++.. +....+|++|.
T Consensus       120 d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          120 TTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             EECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             ECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            99999999999999999999953 67788999985

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.82  E-value=3.4e-19  Score=152.89  Aligned_cols=124  Identities=25%  Similarity=0.335  Sum_probs=101.8

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~  338 (390)
                      ...+.|+|+|++|++|+..+..+.+||||+++++   .++++|+++++++||.|||+|.|.+. + .+.|.|+|||+|.+
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~---~~~~kT~v~~~tlnP~Wne~f~f~v~-~-~~~L~~~V~D~d~~  107 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVD---GQSKKTEKCNNTNSPKWKQPLTVIVT-P-VSKLHFRVWSHQTL  107 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEEEC-T-TCEEEEEEEECCSS
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEEC---CEEeEccccCCCCCCeECCEEEEEeC-C-CCEEEEEEEECCCC
Confidence            4678999999999999944444559999999997   47899999999999999999999985 3 67999999999999


Q ss_pred             CCCceeEEEEEEccccCCC---ce--eeEEEEcccccccCCCCeeeeEEEEE--EeecC
Q 016385          339 QSSELIGCAQVRLCELEPG---KV--KDVWLKLVKDLDVQRDTKYRGQVRIK--YPPYK  390 (390)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~~---~~--~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p~~  390 (390)
                      ++|++||++.+++.++..+   ..  .+.|++|...   +.+.+..|+|+++  |.+++
T Consensus       108 ~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~---~~~~~~~G~L~v~l~~l~~~  163 (173)
T 2nq3_A          108 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD---KEPTETIGDLSICLDGLQLE  163 (173)
T ss_dssp             SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES---SCTTSEEEEEEEEEESEECC
T ss_pred             CCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC---CCCCcccEEEEEEEeeeecc
Confidence            9999999999999998532   22  2679999764   2245678999988  77653

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.80  E-value=3.8e-19  Score=145.12  Aligned_cols=108  Identities=23%  Similarity=0.418  Sum_probs=89.5

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEec---CCCCEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY  333 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~---~~~~~L~v~v~  333 (390)
                      ...|.|.|+|++|++|+.++..|.+||||++++.+.+  ..+++|+++++++||.|||+|.|.+..   .....|.++||
T Consensus        15 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~   94 (129)
T 2bwq_A           15 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   94 (129)
T ss_dssp             TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             cCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEE
Confidence            4678999999999999999989999999999996543  468999999999999999999998532   24579999999


Q ss_pred             EcCCCCC--CceeEEEEEEccccCCCceeeEEEEcc
Q 016385          334 DDEGIQS--SELIGCAQVRLCELEPGKVKDVWLKLV  367 (390)
Q Consensus       334 d~d~~~~--d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (390)
                      |++..++  |++||++.+++.++.... .+.|++|+
T Consensus        95 d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           95 DQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             EC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             ECCcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence            9999887  999999999999986654 78999983

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.80  E-value=7.9e-19  Score=145.08  Aligned_cols=110  Identities=21%  Similarity=0.329  Sum_probs=95.7

Q ss_pred             cceeEEEEEEeeecCCccccCC-CCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEE-EecC--CCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~-v~~~--~~~~L~v~v~d  334 (390)
                      ...+.|.|+|++|++|+.+|.. +.+||||++++.+.+.+.++|+++++++||.|||+|.|. +...  ....|.|+|||
T Consensus        19 ~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d   98 (138)
T 1ugk_A           19 FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILS   98 (138)
T ss_dssp             GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEE
Confidence            5778999999999999999985 899999999998655678999999999999999999996 5432  34689999999


Q ss_pred             cCCCCCCceeEEEEEEccccCCCcee-eEEEEccc
Q 016385          335 DEGIQSSELIGCAQVRLCELEPGKVK-DVWLKLVK  368 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~~~~-~~w~~L~~  368 (390)
                      +|.+++|++||++.+++.++..+... ..|++|.+
T Consensus        99 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~  133 (138)
T 1ugk_A           99 FDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             ECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             CCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence            99999999999999999999776544 56788865

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.79  E-value=2e-19  Score=150.53  Aligned_cols=111  Identities=17%  Similarity=0.347  Sum_probs=98.0

Q ss_pred             cceeEEEEEEeeecCCcccc-CCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  333 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~  333 (390)
                      ...|.|.|+|++|++|+.++ ..+.+||||++++.+.+.  ++++|+++++++||.|||+|.|.+...  ....|.|+||
T Consensus        20 ~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~   99 (148)
T 3fdw_A           20 QQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVW   99 (148)
T ss_dssp             TTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEE
Confidence            56789999999999999888 578999999999986543  488999999999999999999998654  3457999999


Q ss_pred             EcCCCCCCceeEEEEEEccccCCCceeeEEEEcccc
Q 016385          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~  369 (390)
                      |+|.+++|++||++.+++.++..+...+.|++|.+.
T Consensus       100 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  135 (148)
T 3fdw_A          100 HHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK  135 (148)
T ss_dssp             EECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred             ECCCCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence            999998999999999999999877778899999864

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.79  E-value=1.6e-18  Score=160.79  Aligned_cols=128  Identities=29%  Similarity=0.489  Sum_probs=110.5

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDE  336 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d  336 (390)
                      ...|.|+|+|++|++|+.+|..|.+||||++++.+.+.+.++|+++++++||.|||+|.|.+...  ..+.|.|+|||+|
T Consensus        16 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d   95 (284)
T 2r83_A           16 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFD   95 (284)
T ss_dssp             TTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECC
Confidence            46789999999999999999899999999999986656788999999999999999999998653  4579999999999


Q ss_pred             CCCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE--Eee
Q 016385          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPP  388 (390)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p  388 (390)
                      .+++|++||++.+++.++..+...+.|++|.....  ......|+|+++  |.|
T Consensus        96 ~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~--~~~~~~G~i~l~l~~~p  147 (284)
T 2r83_A           96 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK--EEQEKLGDICFSLRYVP  147 (284)
T ss_dssp             SSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSS--CCCCCCCEEEEEEEEET
T ss_pred             CCCCCceeEEEEEcchhcccCCcceeEEEeecccc--ccccccccEEEEEEecC
Confidence            99899999999999999988888899999976321  123457888887  765

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.79  E-value=5.3e-19  Score=146.15  Aligned_cols=107  Identities=16%  Similarity=0.149  Sum_probs=93.4

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecC-CCceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEc
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL-PEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  335 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~  335 (390)
                      ...+.|+|+|++|+   ++|..|.+||||++++.+. +...++|+++++++||.|||+|.|.+...  ....|.|+|||+
T Consensus        23 ~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~   99 (138)
T 1wfm_A           23 CQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTC   99 (138)
T ss_dssp             TTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred             CCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEEC
Confidence            46789999999999   3677899999999999753 33468999999999999999999998654  356899999999


Q ss_pred             CCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      |.+++|++||++.+++.++..+...+.|++|.+
T Consensus       100 d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~  132 (138)
T 1wfm_A          100 DRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             CSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             CCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence            999999999999999999977777889999976

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=3.1e-19  Score=148.24  Aligned_cols=110  Identities=26%  Similarity=0.405  Sum_probs=95.4

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d  334 (390)
                      ...|.|.|+|++|++|+.++..| +||||++++.+.+.  .+++|+++++++||.|||+|.|.+...  ....|.|+|||
T Consensus        21 ~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d   99 (142)
T 2dmg_A           21 SQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKN   99 (142)
T ss_dssp             TTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEE
Confidence            46789999999999999999888 99999999975444  688999999999999999999998542  34589999999


Q ss_pred             cCCCCC--CceeEEEEEEccccCCCceeeEEEEcccc
Q 016385          335 DEGIQS--SELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (390)
Q Consensus       335 ~d~~~~--d~~lG~~~v~l~~l~~~~~~~~w~~L~~~  369 (390)
                      ++.+++  +++||++.+++.++..+...+.|++|.+.
T Consensus       100 ~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~  136 (142)
T 2dmg_A          100 SGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED  136 (142)
T ss_dssp             CCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred             CCCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence            998753  57999999999999877788899999763

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.79  E-value=1.1e-18  Score=146.23  Aligned_cols=108  Identities=35%  Similarity=0.546  Sum_probs=95.4

Q ss_pred             ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC-CCCEEEEEEEEcC
Q 016385          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE  336 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~-~~~~L~v~v~d~d  336 (390)
                      ..|.|+|+|++|++|+.+|..+.+||||++++.+.+  ...++|+++++++||.|||+|.|.+... ....|.|+|||++
T Consensus        29 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d  108 (149)
T 1a25_A           29 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD  108 (149)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred             cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECC
Confidence            357899999999999999988999999999998533  4578999999999999999999998754 2458999999999


Q ss_pred             CCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      ..++|++||++.+++.++..+ ..+.|++|..
T Consensus       109 ~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~  139 (149)
T 1a25_A          109 LTSRNDFMGSLSFGISELQKA-GVDGWFKLLS  139 (149)
T ss_dssp             SSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred             CCCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence            998999999999999999776 4789999975

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.79  E-value=9.3e-19  Score=145.36  Aligned_cols=110  Identities=27%  Similarity=0.519  Sum_probs=97.3

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEE-EecC--CCCEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVRIY  333 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~-v~~~--~~~~L~v~v~  333 (390)
                      ...|.|.|+|++|++|+.++..|.+||||++++.+.+  ...++|+++++++||.|||+|.|. +...  ....|.|+||
T Consensus        26 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~  105 (142)
T 2chd_A           26 QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVC  105 (142)
T ss_dssp             GGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEE
Confidence            5788999999999999999988999999999998533  368899999999999999999998 5432  2358999999


Q ss_pred             EcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      |++.+++|++||++.+++.++..+.....|++|.+
T Consensus       106 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A          106 DEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             EECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             ECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            99999899999999999999998888899999864

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=2.9e-19  Score=149.38  Aligned_cols=110  Identities=21%  Similarity=0.394  Sum_probs=95.7

Q ss_pred             cceeEEEEEEeeecCCccc-cC------CCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNK-DL------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLV  329 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~-d~------~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~  329 (390)
                      ...|.|+|+|++|++|+.. +.      .+.+||||++++.+.+.++++|+++++++||.|||+|.|.+...  ....|.
T Consensus        23 ~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~  102 (147)
T 2enp_A           23 LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLL  102 (147)
T ss_dssp             TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEE
T ss_pred             CCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEE
Confidence            5678999999999999984 43      35899999999986656788999999999999999999998643  245899


Q ss_pred             EEEEEcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          330 VRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       330 v~v~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      |+|||++.+++|++||++.+++.++..+.....|++|.+
T Consensus       103 ~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~  141 (147)
T 2enp_A          103 LTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIP  141 (147)
T ss_dssp             EEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred             EEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeec
Confidence            999999999999999999999999987777789999975

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.78  E-value=9.1e-19  Score=150.16  Aligned_cols=110  Identities=25%  Similarity=0.390  Sum_probs=96.5

Q ss_pred             ceeEEEEEEeeecCCccccC-CCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEE-Ec
Q 016385          260 PVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY-DD  335 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~-d~  335 (390)
                      ..|.|.|+|++|++|+.+|. .|.+||||++++.+.+.  .+++|+++++++||.|||+|.|.+.. ....|.|+|| |+
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~  106 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDY  106 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcC
Confidence            57899999999999999985 69999999999975432  37899999999999999999999854 4679999999 99


Q ss_pred             CCCCCCceeEEEEEEccccCCCceeeEEEEccccc
Q 016385          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDL  370 (390)
Q Consensus       336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~  370 (390)
                      |.+++|++||++.++++++..+...+.|++|.+..
T Consensus       107 d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  141 (171)
T 2q3x_A          107 GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPS  141 (171)
T ss_dssp             STTCSSEEEEEEEECGGGSCTTSCEEEEEECBCGG
T ss_pred             CCCCCCCEEEEEEEEHHHcccCCCcceeEECCCcc
Confidence            99999999999999999998888899999998743

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.78  E-value=4.5e-19  Score=147.00  Aligned_cols=110  Identities=23%  Similarity=0.412  Sum_probs=94.8

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEec---CCCCEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY  333 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~---~~~~~L~v~v~  333 (390)
                      ...+.|+|+|++|++|+.++..+.+||||++++.+.+  .++++|+++++++||.|||+|.|.+..   .....|.|+||
T Consensus        18 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~   97 (141)
T 1v27_A           18 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   97 (141)
T ss_dssp             TTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEE
T ss_pred             CCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEE
Confidence            4568999999999999999989999999999986432  468899999999999999999998432   24579999999


Q ss_pred             EcCCCCC--CceeEEEEEEccccCCCceeeEEEEcccc
Q 016385          334 DDEGIQS--SELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (390)
Q Consensus       334 d~d~~~~--d~~lG~~~v~l~~l~~~~~~~~w~~L~~~  369 (390)
                      |++..++  |++||++.+++.++.... .+.|++|.+.
T Consensus        98 d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~  134 (141)
T 1v27_A           98 DQARVREEESEFLGEILIELETALLDD-EPHWYKLQTH  134 (141)
T ss_dssp             EBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCC
T ss_pred             ECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccc
Confidence            9999886  999999999999986554 7899999763

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.78  E-value=1.9e-19  Score=149.52  Aligned_cols=108  Identities=23%  Similarity=0.453  Sum_probs=94.7

Q ss_pred             eeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC-----------ceEeeeccCCCCCCeeeeEEEEE-Eec--CCCC
Q 016385          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE-----------KTKKSKTINNDLNPIWNEHFEFI-VED--ESTQ  326 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~-----------~~~kT~v~~~~~nP~w~e~f~f~-v~~--~~~~  326 (390)
                      .|.|+|+|++|++|+.+|..|.+||||++++.+...           ..++|+++++++||.|||+|.|. +..  ....
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            689999999999999999999999999999985432           35789999999999999999997 542  2467


Q ss_pred             EEEEEEEEcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          327 HLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       327 ~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      .|.++|||+|.+++|++||++.+++.++..+...+.|++|.+
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~  138 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE  138 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCc
Confidence            999999999999999999999999999877777889999975

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.77  E-value=2.6e-18  Score=144.61  Aligned_cols=110  Identities=27%  Similarity=0.499  Sum_probs=94.9

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC-CCCEEEEEEEEc
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDD  335 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~-~~~~L~v~v~d~  335 (390)
                      ...|.|.|+|++|++|+..| .|.+||||++++.+..  ..+++|+++++++||.|||+|.|.+... ....|.|+|||+
T Consensus        24 ~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~  102 (153)
T 3fbk_A           24 AQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNR  102 (153)
T ss_dssp             ESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEEC
T ss_pred             CCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeC
Confidence            67899999999999999998 6999999999996432  4578999999999999999999998432 234699999999


Q ss_pred             CCCCC-CceeEEEEEEccccCC-CceeeEEEEcccc
Q 016385          336 EGIQS-SELIGCAQVRLCELEP-GKVKDVWLKLVKD  369 (390)
Q Consensus       336 d~~~~-d~~lG~~~v~l~~l~~-~~~~~~w~~L~~~  369 (390)
                      +.+++ |++||++.+++.++.. +...+.|++|.+.
T Consensus       103 d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~  138 (153)
T 3fbk_A          103 ASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE  138 (153)
T ss_dssp             CSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred             CCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence            99876 9999999999999974 7788999999874

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.77  E-value=4.8e-18  Score=143.85  Aligned_cols=111  Identities=32%  Similarity=0.459  Sum_probs=95.4

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d  334 (390)
                      ...|.|.|+|++|++|+.+|..|.+||||++++.+.+.  ..++|+++++++||.|||+|.|.+...  ....|.|+|||
T Consensus        22 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d  101 (159)
T 1tjx_A           22 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD  101 (159)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEE
Confidence            56789999999999999999889999999999975432  478999999999999999999998654  24589999999


Q ss_pred             cCCCCCCceeEEEEEEcccc------------CCCceeeEEEEcccc
Q 016385          335 DEGIQSSELIGCAQVRLCEL------------EPGKVKDVWLKLVKD  369 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l------------~~~~~~~~w~~L~~~  369 (390)
                      +|.+++|++||++.+++..+            .++...+.|++|.+.
T Consensus       102 ~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~  148 (159)
T 1tjx_A          102 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (159)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             CCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCc
Confidence            99999999999999999843            345677899999763

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.76  E-value=4.7e-18  Score=140.22  Aligned_cols=96  Identities=25%  Similarity=0.473  Sum_probs=84.7

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecCC--CCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~~--~~~L~v~v~d  334 (390)
                      ...|.|.|+|++|++|+..|..|.+||||++++.+.+.  .+++|++++++.||.|||+|.|.+....  ...|.++|||
T Consensus        13 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d   92 (138)
T 3n5a_A           13 PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMD   92 (138)
T ss_dssp             TTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEE
T ss_pred             CCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEE
Confidence            46789999999999999999889999999999975432  4788999999999999999999986542  3689999999


Q ss_pred             cCCCCCCceeEEEEEEcccc
Q 016385          335 DEGIQSSELIGCAQVRLCEL  354 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l  354 (390)
                      ++.+++|++||++.++++++
T Consensus        93 ~~~~~~~~~lG~~~i~l~~~  112 (138)
T 3n5a_A           93 KDKLSRNDVIGKIYLSWKSG  112 (138)
T ss_dssp             CCSSSCCEEEEEEEESSSSC
T ss_pred             CCCCCCCcEEEEEEEccccC
Confidence            99999999999999999864

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.75  E-value=1.3e-17  Score=142.24  Aligned_cols=110  Identities=25%  Similarity=0.423  Sum_probs=94.2

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d  334 (390)
                      ...|.|.|+|++|++|+.+|..|.+||||++++.+.+  ...++|+++++++||.|||+|.|.+...  ....|.|+|||
T Consensus        34 ~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d  113 (166)
T 2cm5_A           34 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD  113 (166)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEE
Confidence            5688999999999999999989999999999998532  3688999999999999999999998653  35699999999


Q ss_pred             cCCCCCCceeEEEEEEcccc------------CCCceeeEEEEccc
Q 016385          335 DEGIQSSELIGCAQVRLCEL------------EPGKVKDVWLKLVK  368 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l------------~~~~~~~~w~~L~~  368 (390)
                      ++.+++|++||++.+++.++            .++.....|+.|..
T Consensus       114 ~d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~~  159 (166)
T 2cm5_A          114 YDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN  159 (166)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC
T ss_pred             CCCCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEeeECCC
Confidence            99999999999999999874            24556677877764

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.74  E-value=1.2e-17  Score=140.52  Aligned_cols=107  Identities=24%  Similarity=0.351  Sum_probs=84.2

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCc--eEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d  334 (390)
                      ...|.|.|+|++|++|+.+|..|.+||||++++.+.+..  +++|+++++++||.|||+|.|.+...  ....|.|+|||
T Consensus        27 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d  106 (153)
T 1w15_A           27 STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLD  106 (153)
T ss_dssp             TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEe
Confidence            467899999999999999998899999999999754332  67999999999999999999998754  24689999999


Q ss_pred             cCCCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (390)
                      ++.+++|++||++.+++.+  .+...++|++|.
T Consensus       107 ~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~  137 (153)
T 1w15_A          107 SERGSRNEVIGRLVLGATA--EGSGGGHWKEIC  137 (153)
T ss_dssp             CCTTSCCEEEEEEEESTTC--CSHHHHHHHHHH
T ss_pred             CCCCCCCcEEEEEEECCCC--CchHHHHHHHHH
Confidence            9999999999999999987  233344555554

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.72  E-value=2.4e-17  Score=153.85  Aligned_cols=127  Identities=29%  Similarity=0.472  Sum_probs=104.8

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDE  336 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d  336 (390)
                      ...|.|.|+|++|++|+.+|..|.+||||++++.+.+.+.++|+++++++||.|||+|.|.+...  ....|.|+|||+|
T Consensus        17 ~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d   96 (296)
T 1dqv_A           17 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   96 (296)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcC
Confidence            56789999999999999999999999999999976667789999999999999999999998643  3458999999999


Q ss_pred             CCCCCceeEEEEEE-ccccCC-CceeeEEEEcccccccCCCCeeeeEEEEE--Eee
Q 016385          337 GIQSSELIGCAQVR-LCELEP-GKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPP  388 (390)
Q Consensus       337 ~~~~d~~lG~~~v~-l~~l~~-~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p  388 (390)
                      .+++|++||++.++ +.++.. +...+.|++|....   ......|+|+++  |.|
T Consensus        97 ~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~---~~~~~~G~i~vsl~y~~  149 (296)
T 1dqv_A           97 RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG---SEKADLGELNFSLCYLP  149 (296)
T ss_dssp             SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCS---SCCSCCCEEEEEEEEET
T ss_pred             CCCCCceEEEEEeccccccccCCccceeeecccccc---ccccccceEEEEEEecc
Confidence            99999999999996 444433 34567899997532   234457998887  765

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.72  E-value=2.7e-16  Score=156.76  Aligned_cols=172  Identities=19%  Similarity=0.292  Sum_probs=125.6

Q ss_pred             eEEEEeccce-eEEEEEEEccccccc-CCCcHHHHHHHHHHHhhccccC-----C--ceeEeeCC---------CCC--c
Q 016385          194 AVSYSLREKK-KLDFKLKVVGGDIST-IPGLSDSIEATIHDAIEDSITW-----P--VRKIVPIL---------PGD--Y  253 (390)
Q Consensus       194 ~~~~~f~~~P-~l~f~l~~~g~~~~~-iP~l~~~i~~~i~~~i~~~~v~-----P--~~~~ipl~---------~~~--~  253 (390)
                      .+.=++...| .|++.+.++. ++.. -+.....++.++.+.+.+.-.+     |  |- ..++.         ++.  .
T Consensus       306 ~W~~Sv~~~P~~I~~~l~PI~-~Lv~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn-~~~l~g~~C~C~C~~~~~t~  383 (540)
T 3nsj_A          306 TWTASLPSNPGLVDYSLEPLH-TLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSG-QHKSSHDSCQCECQDSKVTN  383 (540)
T ss_dssp             HHHHHTTTSCEEEEEEEEEGG-GGSCTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTT-EEECSSCTTCEEESCTTTBC
T ss_pred             HHHHHHhhCCceEEEEEEEHH-HhcCCcHHHHHHHHHHHHHHHHhcCchhhhcccccCC-CccCCCCceEeeCCCCCCcc
Confidence            3334455555 6788888864 3322 2334567888888888776555     2  11 11221         110  0


Q ss_pred             cc-cc-ccceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEec-CCCCEEEE
Q 016385          254 SE-LE-LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-ESTQHLVV  330 (390)
Q Consensus       254 ~~-~~-~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~-~~~~~L~v  330 (390)
                      .+ .+ ....|.|+|+|++|++|+. |..|++||||+++++   .+.++|+++++++||.|||+|.|.+.+ ...+.|+|
T Consensus       384 ~~~C~~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~---~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~  459 (540)
T 3nsj_A          384 QDCCPRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFG---GQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRV  459 (540)
T ss_dssp             GGGCBSSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEET---TEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEE
T ss_pred             cccccccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEEC---CEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEE
Confidence            11 11 2458999999999999998 989999999999997   467999999999999999999998653 45779999


Q ss_pred             EEEEcCCCCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEEE
Q 016385          331 RIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIKY  386 (390)
Q Consensus       331 ~v~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~y  386 (390)
                      +|||+|..++||+||++.++|.   .| ..+.|++|.           .|.|+++|
T Consensus       460 ~V~D~D~~~~dD~LG~~~~~L~---~g-~~~~~~~l~-----------~G~l~~~~  500 (540)
T 3nsj_A          460 QVWDADYGWDDDLLGSCDRSPH---SG-FHEVTCELN-----------HGRVKFSY  500 (540)
T ss_dssp             EEEECCSSSCCEEEEEEEECCC---SE-EEEEEEECS-----------SSEEEEEE
T ss_pred             EEEECCCCCCCCEEEEEEEEee---CC-cEEEEEEcC-----------CeEEEEEE
Confidence            9999999989999999999986   33 467898873           47788774

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.70  E-value=5.8e-17  Score=162.64  Aligned_cols=116  Identities=22%  Similarity=0.454  Sum_probs=102.2

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~  338 (390)
                      ...|.|+|+|++|++|+.+|..|.+||||+++++   .++++|+++++++||.|||+|.|.+..+..+.|.|+|||+|.+
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~---~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~  460 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMG---SQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF  460 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSS
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEEC---CeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence            5678999999999999999999999999999996   5789999999999999999999999877778999999999999


Q ss_pred             CCCceeEEEEEEccccCCCce----eeEEEEcccccccCCCCeeeeEEEEE
Q 016385          339 QSSELIGCAQVRLCELEPGKV----KDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~~~~----~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      ++|++||++.++++++..+..    ...|+++..        +.+|+|+++
T Consensus       461 ~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~--------~~~G~i~l~  503 (510)
T 3jzy_A          461 SPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHE--------VPTGEVWVR  503 (510)
T ss_dssp             SSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBS--------SSSCEEEEE
T ss_pred             CCCCceEEEEEEHHHhccccCCCCceeeeecCCC--------CCCceEEEE
Confidence            999999999999999876543    678999843        356888877

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.67  E-value=4.3e-16  Score=127.27  Aligned_cols=99  Identities=22%  Similarity=0.315  Sum_probs=78.2

Q ss_pred             ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccC-CCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC
Q 016385          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~  338 (390)
                      +.|.|.|+|++|+++..   .|.+||||++. .   . ..+|++++ ++.||.|||+|.|.+.+. ...|.++|||+| .
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~---~-~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~   72 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V---Q-NVKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-L   72 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEE-E---T-TEEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-S
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEE-e---c-CEEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-C
Confidence            46899999999998852   57899999999 3   2 34455554 799999999999999865 458999999999 8


Q ss_pred             CCCceeEEEEEEccccCCCc--eeeEEEEccc
Q 016385          339 QSSELIGCAQVRLCELEPGK--VKDVWLKLVK  368 (390)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~~~--~~~~w~~L~~  368 (390)
                      ++|++||++.+++.++....  ....|.++..
T Consensus        73 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~  104 (131)
T 2cjt_A           73 IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS  104 (131)
T ss_dssp             SCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred             CCCCeEEEEEEEHHHhhhcCCCCccccEEccc
Confidence            89999999999999985432  2235666643

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.66  E-value=8.3e-16  Score=124.27  Aligned_cols=119  Identities=19%  Similarity=0.277  Sum_probs=99.6

Q ss_pred             ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccC-CCCCCeeeeEEEEEEecC--CCCEEEEEEEEcC
Q 016385          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDE--STQHLVVRIYDDE  336 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d  336 (390)
                      ..-.|+|++.+|++|+     |++|||+++.+.   +.+++|++++ ++.||.|||.|++.+..+  .+..|.+.|+|++
T Consensus        19 ~~msL~V~l~~a~~Lp-----g~~Dp~akv~FR---g~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~   90 (144)
T 3l9b_A           19 SHMALIVHLKTVSELR-----GRADRIAKVTFR---GQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYS   90 (144)
T ss_dssp             CCEEEEEEEEEEESCC-----SCEEEEEEEEET---TEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEEC
T ss_pred             CcEEEEEEEEEecCCC-----CCCCCeEEEEEe---ccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECc
Confidence            3457999999999998     689999999996   7789999998 799999999999998754  5679999999999


Q ss_pred             CCCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE--EeecC
Q 016385          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPPYK  390 (390)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p~~  390 (390)
                      +++++++||++.++|.++..+.....+-+|...    ++....++|.++  |.|.+
T Consensus        91 ~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~----n~~~~~a~I~l~l~Y~pp~  142 (144)
T 3l9b_A           91 KVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDD----NNAIIKTSLSMEVRYQAAD  142 (144)
T ss_dssp             TTSCCEEEEEEEEESHHHHHHSEEEEEEEEECT----TSCEEEEEEEEEEEEEETT
T ss_pred             cccCCCEEEEEEEEhHHhccCCeEEEeecccCC----CCCccccEEEEEEEecCCC
Confidence            999999999999999999776666666667642    233445788888  99863

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.64  E-value=3.4e-16  Score=160.72  Aligned_cols=111  Identities=28%  Similarity=0.557  Sum_probs=101.4

Q ss_pred             ccceeEEEEEEeeecCCcc---ccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEE
Q 016385          258 LKPVGTLEVKLVQAKGLTN---KDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD  334 (390)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~---~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d  334 (390)
                      ..+.|.|+|+|++|++|+.   +|..|.+||||++++.+...++++|+++++++||.|||+|.|.+.....+.|.|+|||
T Consensus        14 ~~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D   93 (749)
T 1cjy_A           14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD   93 (749)
T ss_dssp             CCCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEE
T ss_pred             CCCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEE
Confidence            3678999999999999998   8888999999999998655578999999999999999999999988767799999999


Q ss_pred             cCCCCCCceeEEEEEEccccCCCceeeEEEEcccc
Q 016385          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~  369 (390)
                      +|.++ |++||++.+++.++..+...+.|++|.+.
T Consensus        94 ~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~  127 (749)
T 1cjy_A           94 ANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV  127 (749)
T ss_dssp             CCSSS-CEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred             CCCCC-CceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence            99998 99999999999999888888999999753

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.63  E-value=3.2e-15  Score=127.12  Aligned_cols=88  Identities=20%  Similarity=0.279  Sum_probs=74.2

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccC-CCCCCeeeeEEEEEEecCCCCEEEEEEEEcCC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~  337 (390)
                      .+.|.|+|+|++|+++.   ..+.+||||++. .    +..+|++++ ++.||.|||+|.|.+.+. ...|.|+|||+| 
T Consensus        11 g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~----~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-   80 (167)
T 2cjs_A           11 GILSLLCVGVKKAKFDG---AQEKFNTYVTLK-V----QNVESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-   80 (167)
T ss_dssp             SCCCEEEEEEEEEECSS---CGGGCEEEEEEE-E----TTEEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-
T ss_pred             CceEEEEEEEEEEECCC---CCCCCCeEEEEE-e----cceEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-
Confidence            45789999999999884   357899999999 3    235566665 699999999999999865 458999999999 


Q ss_pred             CCCCceeEEEEEEccccCC
Q 016385          338 IQSSELIGCAQVRLCELEP  356 (390)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~  356 (390)
                      +++|++||++.++|.++..
T Consensus        81 ~~~dd~iG~~~i~L~~l~~   99 (167)
T 2cjs_A           81 LIWDTMVGTVWIPLRTIRQ   99 (167)
T ss_dssp             SSCCEEEEEEEEEGGGSCB
T ss_pred             CCCCceEEEEEEEHHHhcc
Confidence            8899999999999999853

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.63  E-value=2.6e-15  Score=139.14  Aligned_cols=111  Identities=32%  Similarity=0.459  Sum_probs=94.6

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecCC--CCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~~--~~~L~v~v~d  334 (390)
                      +..|.|.|+|++|++|+.+|..|.+||||++++.+.+.  .+++|+++++++||.|||+|.|.+....  ...|.|+|||
T Consensus       147 p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d  226 (284)
T 2r83_A          147 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD  226 (284)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEE
T ss_pred             CcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEe
Confidence            45789999999999999999899999999999875433  4678999999999999999999986542  4579999999


Q ss_pred             cCCCCCCceeEEEEEEcccc------------CCCceeeEEEEcccc
Q 016385          335 DEGIQSSELIGCAQVRLCEL------------EPGKVKDVWLKLVKD  369 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l------------~~~~~~~~w~~L~~~  369 (390)
                      ++.+++|++||++.++++.+            .++.....|++|.+.
T Consensus       227 ~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~  273 (284)
T 2r83_A          227 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  273 (284)
T ss_dssp             CCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred             CCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence            99999999999999999752            345667899999763

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.56  E-value=4.9e-14  Score=143.53  Aligned_cols=120  Identities=18%  Similarity=0.323  Sum_probs=98.8

Q ss_pred             ceeEEEEEEeeecCCccccC--CCCCCcEEEEEEecC--CCceEeeeccCCC-CCCeeeeEEEEEEecCCCCEEEEEEEE
Q 016385          260 PVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPL--PEKTKKSKTINND-LNPIWNEHFEFIVEDESTQHLVVRIYD  334 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~--~~~~~kT~v~~~~-~nP~w~e~f~f~v~~~~~~~L~v~v~d  334 (390)
                      ..+.|+|+|++|++|+..+.  .+.+||||++.+.+.  ...++||++++++ +||.|||+|.|.+..++...|+|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            57899999999999998873  688999999999632  2357899999987 999999999999987766799999999


Q ss_pred             cCCCCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      +|..++|++||++.+++.++..|.   .|++|....   ...-..|.|.++
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~---g~~~~~~~L~v~  619 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKN---GDQHPSATLFVK  619 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTT---SCEEEEEEEEEE
T ss_pred             cCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCC---cCCCCceEEEEE
Confidence            999989999999999999998763   488886421   111245677665

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.54  E-value=1.7e-15  Score=141.26  Aligned_cols=111  Identities=32%  Similarity=0.463  Sum_probs=94.2

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d  334 (390)
                      +..|.|+|+|++|++|+.+|..|.+||||++++.+.+  ..+++|+++++++||.|||+|.|.+...  ....|.|+|||
T Consensus       149 ~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d  228 (296)
T 1dqv_A          149 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVD  228 (296)
T ss_dssp             TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEE
T ss_pred             cccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEe
Confidence            4679999999999999999999999999999997533  3578999999999999999999988654  24579999999


Q ss_pred             cCCCCCCceeEEEEEEccccC-------------CCceeeEEEEcccc
Q 016385          335 DEGIQSSELIGCAQVRLCELE-------------PGKVKDVWLKLVKD  369 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~-------------~~~~~~~w~~L~~~  369 (390)
                      ++.+++|++||++.++++++.             ++.....|++|...
T Consensus       229 ~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~  276 (296)
T 1dqv_A          229 YDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE  276 (296)
T ss_dssp             CCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred             CCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence            999999999999999998652             34566788888764

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.50  E-value=1.4e-15  Score=150.96  Aligned_cols=103  Identities=18%  Similarity=0.332  Sum_probs=16.9

Q ss_pred             ccceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCC---CCCeeeeEEEEEEecCCCCEEEEEEEE
Q 016385          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINND---LNPIWNEHFEFIVEDESTQHLVVRIYD  334 (390)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~---~nP~w~e~f~f~v~~~~~~~L~v~v~d  334 (390)
                      .+..|.|+|+|++|++|+++|     ||||+++++  +....||++++++   +||.|||+|.|.+.+. ...|.++|||
T Consensus         7 ~r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~--~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d   78 (483)
T 3bxj_A            7 RRVDNVLKLWIIEARELPPKK-----RYYCELCLD--DMLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYR   78 (483)
T ss_dssp             EEEEECC----------------------------------------------------CCEECC---------------
T ss_pred             ceeccEEEEEEEEcCCcCCCC-----CCeEEEEEC--CeEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEe
Confidence            467899999999999999776     999999986  2346789999998   9999999999987544 4689999999


Q ss_pred             c-C---CCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          335 D-E---GIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       335 ~-d---~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      + |   ..++|++||++.++++++..+...+.|++|..
T Consensus        79 ~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~  116 (483)
T 3bxj_A           79 DSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTL  116 (483)
T ss_dssp             ----------------------------CCEECC----
T ss_pred             cCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCC
Confidence            4 4   36789999999999999988888899999965

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.37  E-value=1.2e-12  Score=135.52  Aligned_cols=109  Identities=35%  Similarity=0.558  Sum_probs=94.8

Q ss_pred             ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC-CCCEEEEEEEEcC
Q 016385          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE  336 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~-~~~~L~v~v~d~d  336 (390)
                      ..+.|.|++.+|++|.++|..|.+|||+++++.+.+  ..+++|+++++++||.|||+|.|.+... ....|.++|||+|
T Consensus       170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d  249 (674)
T 3pfq_A          170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD  249 (674)
T ss_dssp             CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECC
T ss_pred             ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecc
Confidence            457899999999999999999999999999996543  4578999999999999999999998754 3457999999999


Q ss_pred             CCCCCceeEEEEEEccccCCCceeeEEEEcccc
Q 016385          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (390)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~  369 (390)
                      ..++|++||++.+++.++..+. .+.|+.|...
T Consensus       250 ~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~  281 (674)
T 3pfq_A          250 LTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ  281 (674)
T ss_dssp             SSSCCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred             cccccccccccccchhhhccCC-cccceeeccc
Confidence            9999999999999999987654 4899998653

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.18  E-value=8.9e-11  Score=122.59  Aligned_cols=111  Identities=18%  Similarity=0.359  Sum_probs=84.7

Q ss_pred             eeEEEEEEeeecCCccccCCCCCCcEEEEEEecC--CC-ceEeeeccCC-CCCCeeee-EEEEE-EecCCCCEEEEEEEE
Q 016385          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PE-KTKKSKTINN-DLNPIWNE-HFEFI-VEDESTQHLVVRIYD  334 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~-~~~kT~v~~~-~~nP~w~e-~f~f~-v~~~~~~~L~v~v~d  334 (390)
                      ...|+|+|++|++|+..    .+||||++.+.+.  .. ++++|+++++ ++||.||| +|.|. +..++...|+|+|||
T Consensus       724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D  799 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE  799 (885)
T ss_dssp             CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence            34799999999999853    6899999999742  22 3578999875 59999999 69998 766666789999999


Q ss_pred             cCCCCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      +|    +++||++.++|..|..|-   .+++|....   ...-..|.|.+.
T Consensus       800 ~d----ddfiG~~~lpL~~L~~Gy---R~vpL~~~~---g~~l~~atLfv~  840 (885)
T 3ohm_B          800 EG----GKFVGHRILPVSAIRSGY---HYVCLRNEA---NQPLCLPALLIY  840 (885)
T ss_dssp             TT----TEEEEEEEEETTTCCCEE---EEEEEECTT---SCEEEEEEEEEE
T ss_pred             CC----ccEEeeEEEEHHHcCCCc---eEEEecCCC---CCccCceEEEEE
Confidence            86    789999999999998763   356775421   112245676665

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.18  E-value=1.3e-10  Score=120.80  Aligned_cols=97  Identities=27%  Similarity=0.451  Sum_probs=79.7

Q ss_pred             eeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--C--ceEeeeccCC-CCCCeeeeE-EEEE-EecCCCCEEEEEEE
Q 016385          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--E--KTKKSKTINN-DLNPIWNEH-FEFI-VEDESTQHLVVRIY  333 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~--~~~kT~v~~~-~~nP~w~e~-f~f~-v~~~~~~~L~v~v~  333 (390)
                      .+.|+|+|++|++|+.+    .+||||++.+.+.+  .  ++++|+++++ ++||.|||+ |.|. +..++...|+|+||
T Consensus       649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~  724 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS  724 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence            47899999999999853    68999999987322  2  4678999875 699999998 9998 76666679999999


Q ss_pred             EcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      |++    ++++|++.++|+.|..|-   .+++|..
T Consensus       725 D~d----ddfiG~~~ipL~~L~~Gy---R~vpL~~  752 (816)
T 3qr0_A          725 EEN----GKFIGHRVMPLDGIKPGY---RHVPLRN  752 (816)
T ss_dssp             ETT----SCEEEEEEEESTTCCCEE---EEEEEEC
T ss_pred             ecC----CCeeeEEEEEHHHcCCcc---eEEEEeC
Confidence            985    789999999999998763   3567754

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.16  E-value=2.2e-10  Score=119.51  Aligned_cols=98  Identities=20%  Similarity=0.363  Sum_probs=80.4

Q ss_pred             ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecC--C-CceEeee-ccC-CCCCCeeee-EEEE-EEecCCCCEEEEEE
Q 016385          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--P-EKTKKSK-TIN-NDLNPIWNE-HFEF-IVEDESTQHLVVRI  332 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~-~~~~kT~-v~~-~~~nP~w~e-~f~f-~v~~~~~~~L~v~v  332 (390)
                      ..|.|.|+|++|++|+.    +.+||||++.+.+.  . .+++||+ +++ +++||.||| +|.| .+..++...|+|+|
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V  751 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV  751 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence            46899999999999984    46899999999532  1 2467899 776 569999999 6999 88766667999999


Q ss_pred             EEcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       333 ~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      ||+|    +++||++.++++.|.+|.   .|++|..
T Consensus       752 ~D~d----~d~iG~~~ipl~~L~~G~---r~v~L~~  780 (799)
T 2zkm_X          752 MEEG----NKFLGHRIIPINALNSGY---HHLCLHS  780 (799)
T ss_dssp             EETT----TEEEEEEEEEGGGBCCEE---EEEEEEC
T ss_pred             EEeC----CCccceEeeehhhcCCCc---EEEeccC
Confidence            9986    789999999999998763   4677754

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.00  E-value=6.7e-09  Score=81.43  Aligned_cols=110  Identities=12%  Similarity=0.182  Sum_probs=79.7

Q ss_pred             ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC-CceEee-eccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCC
Q 016385          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP-EKTKKS-KTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~~~kT-~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~  337 (390)
                      ..+.|+|.+.+..--.-+......||||.+.+...- ....+| ...++|..|.|||+|.-.+.  +.+.|.+.|++...
T Consensus         4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~--~Gr~l~i~Vfh~a~   81 (126)
T 1yrk_A            4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY--EGRVIQIVLMRAAE   81 (126)
T ss_dssp             CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECC--TTCEEEEEEEEETT
T ss_pred             cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeee--CCEEEEEEEEcCCC
Confidence            345788888665532211222358999999986211 112354 66788999999999988886  45699999996543


Q ss_pred             CCCCceeEEEEEEccccC-----CCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          338 IQSSELIGCAQVRLCELE-----PGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~-----~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                          ++++.|.+++.+|.     .+...+.|+.|+          +.|+|++.
T Consensus        82 ----~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe----------P~Gkl~~~  120 (126)
T 1yrk_A           82 ----EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ----------PQAKVLMS  120 (126)
T ss_dssp             ----EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB----------SSCEEEEE
T ss_pred             ----CeeeEEEEEHHHHHhhhccCCCceEEEEecc----------cCcEEEEE
Confidence                89999999999996     456779999995          46888876

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.87  E-value=1.1e-08  Score=81.31  Aligned_cols=110  Identities=15%  Similarity=0.299  Sum_probs=79.1

Q ss_pred             ceeEEEEEEeeecCCcccc-CCCCCCcEEEEEEecCC-CceEee-eccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcC
Q 016385          260 PVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLP-EKTKKS-KTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDE  336 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~-~~~~kT-~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d  336 (390)
                      ..+.|+|.+.+..--+.+. .....||||.+.+...- ....+| ...++|..|.|||.|.-.+.  +.+.|.+.|++..
T Consensus         8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~--~Gr~l~i~Vfh~a   85 (138)
T 2enj_A            8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN--KGRVMQIIVKGKN   85 (138)
T ss_dssp             CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCC--SSCEEEEEEECSS
T ss_pred             cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEE--CCeEEEEEEEcCC
Confidence            4567888887765433221 12358999999987311 012455 55667899999999988776  4568999999543


Q ss_pred             CCCCCceeEEEEEEccccC-----CCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          337 GIQSSELIGCAQVRLCELE-----PGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~-----~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      .    ++++.|.+++.+|.     .+...+.|+.|++          .|+|++.
T Consensus        86 ~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP----------~Gkl~v~  125 (138)
T 2enj_A           86 V----DLISETTVELYSLAERCRKNNGKTEIWLELKP----------QGRMLMN  125 (138)
T ss_dssp             C----SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS----------SCEEEEE
T ss_pred             C----CeeeEEEEEHHHHHhhhccCCCceEEEEeccc----------CcEEEEE
Confidence            2    89999999999996     4556799999954          6777776

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=94.40  E-value=0.83  Score=39.40  Aligned_cols=56  Identities=21%  Similarity=0.249  Sum_probs=42.8

Q ss_pred             ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcCCC----CCCceeEEEEEEcc
Q 016385          297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI----QSSELIGCAQVRLC  352 (390)
Q Consensus       297 ~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d~~----~~d~~lG~~~v~l~  352 (390)
                      ..++|.+...+.+|.|+|++.+.+...  ....|.|++++....    ..+..+|.+.+||-
T Consensus        77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~  138 (220)
T 3l4c_A           77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM  138 (220)
T ss_dssp             SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred             eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence            357788888899999999999888644  456899999875421    22357899999984

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=91.09  E-value=1.8  Score=35.11  Aligned_cols=121  Identities=12%  Similarity=0.137  Sum_probs=80.6

Q ss_pred             cceeEEEEEEeeecCCccc-cCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC-------CCCEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNK-DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-------STQHLVV  330 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~-d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~-------~~~~L~v  330 (390)
                      +..+.+.|+|.++.--+.. ...+..+|..-+.+.--.-+.+.|.+.. +.+|.+|.+-.+.|.-.       .+..+.+
T Consensus        15 ~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~l   93 (156)
T 2yrb_A           15 RGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITL   93 (156)
T ss_dssp             SSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEE
T ss_pred             CCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEE
Confidence            5678999999988732111 1124467887777765556778888776 78999999888887432       3447889


Q ss_pred             EEEEcCCCCCCceeEEEEEEccccCCCce-eeEEEEcccccccCCCC-eeeeEEEEE
Q 016385          331 RIYDDEGIQSSELIGCAQVRLCELEPGKV-KDVWLKLVKDLDVQRDT-KYRGQVRIK  385 (390)
Q Consensus       331 ~v~d~d~~~~d~~lG~~~v~l~~l~~~~~-~~~w~~L~~~~~~~~~~-~~~G~i~l~  385 (390)
                      +++.... ...+.+|.+++++.++..... .-.-.+|...    .++ ..-|+|.+.
T Consensus        94 ELhqa~g-~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~----~g~~~~~G~Leyw  145 (156)
T 2yrb_A           94 EVHQAYS-TEYETIAACQLKFHEILEKSGRIFCTASLIGT----KGDIPNFGTVEYW  145 (156)
T ss_dssp             EEEEECS-SCEEEEEEEEECCSHHHHCCSCEEEEEEECBS----SSCCTTSEEEEEE
T ss_pred             EEEEeeC-CCceEEEEEEEEhHHhhCcCCceEEEEEEEcC----CCCcceEEEEEEE
Confidence            9988764 356799999999999854332 3344455432    122 356877765

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=87.06  E-value=3.8  Score=43.28  Aligned_cols=92  Identities=17%  Similarity=0.246  Sum_probs=60.4

Q ss_pred             ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC---ceEeeeccCCCCCCeeeeEEEEEEe--c-CCCCEEEEEEE
Q 016385          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIY  333 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~v~~~~~nP~w~e~f~f~v~--~-~~~~~L~v~v~  333 (390)
                      -...+.|+|.++.++...   ..++-|+.+.+-..+.   ....|+.+....+|.|||...|.+.  + |.+..|.+.+|
T Consensus       215 ~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~  291 (940)
T 2wxf_A          215 LEQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALY  291 (940)
T ss_dssp             CCSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred             cCCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEE
Confidence            345789999999988643   3467888776632221   1233444444678999999888775  2 45679999999


Q ss_pred             EcCCC--C----------CCceeEEEEEEcccc
Q 016385          334 DDEGI--Q----------SSELIGCAQVRLCEL  354 (390)
Q Consensus       334 d~d~~--~----------~d~~lG~~~v~l~~l  354 (390)
                      +....  +          .+..+|.+.+++-+-
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             EEC----------------CEEEEEEEEESBCT
T ss_pred             EecCCccCccccccccccccceEEEEeeeEECC
Confidence            96331  1          245999999998663

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=82.02  E-value=12  Score=40.00  Aligned_cols=93  Identities=16%  Similarity=0.228  Sum_probs=61.0

Q ss_pred             ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC---ceEeeeccCCCCCCeeeeEEEEEEe--c-CCCCEEEEEEE
Q 016385          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIY  333 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~v~~~~~nP~w~e~f~f~v~--~-~~~~~L~v~v~  333 (390)
                      -...++|+|.++.++... .....+-|+.+.+--.+.   ...+|+.+. ..+|.|||...|.+.  + |....|.+.+|
T Consensus       353 ~~~~f~v~i~~~~~~n~~-~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~  430 (1091)
T 3hhm_A          353 INSALRIKILCATYVNVN-IRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSIC  430 (1091)
T ss_dssp             CCSEEEEEEEEESCCCCC-CSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEEC
T ss_pred             CCCCEEEEEEEecCCCCC-ccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEE
Confidence            345789999999887532 223467888887752222   223344333 457889999888875  2 45679999999


Q ss_pred             EcCCC----CCCceeEEEEEEcccc
Q 016385          334 DDEGI----QSSELIGCAQVRLCEL  354 (390)
Q Consensus       334 d~d~~----~~d~~lG~~~v~l~~l  354 (390)
                      +....    ..+..+|.+.+++-+-
T Consensus       431 ~~~~~~~~~~~~~~lg~~n~~lfd~  455 (1091)
T 3hhm_A          431 SVKGRKGAKEEHCPLAWGNINLFDY  455 (1091)
T ss_dssp             CCCCCC-------CCEEEEEESBCT
T ss_pred             EecCccCcccccceeEEeeeeeEcc
Confidence            86542    1345899999999664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	390
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	2e-22
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	6e-22
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	3e-21
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	1e-20
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	4e-20
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	3e-17
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	2e-16
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	3e-16
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	7e-16
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	8e-16
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	1e-15
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	6e-15
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	2e-14
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	2e-14
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	5e-14
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	4e-13
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	9e-11
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	4e-09

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 89.8 bits (222), Expect = 2e-22
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 10/128 (7%)

Query: 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 318
            P GTLEV LV AKGL + D +   DPY  L  R   +K+  ++ +     P WNE F F
Sbjct: 7   GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMG--TTPEWNETFIF 64

Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-GKVKDVWLKLVKDLDVQRDTK 377
            V + +   L  +I+D +     + +G A + L  +   G +      +VKD       +
Sbjct: 65  TVSEGT-TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE------E 117

Query: 378 YRGQVRIK 385
           Y+G++ + 
Sbjct: 118 YKGEIWVA 125

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 89.0 bits (220), Expect = 6e-22
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
             L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 321 -EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             +   + LV+ +YD +     ++IG  +V +  ++ G V + W  L
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.3 bits (213), Expect = 3e-21
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 4/108 (3%)

Query: 262 GTLEVKLVQAKGLTN---KDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 318
               V +++A  +T     D++   DPY  LF+   P+  K+++  NND+NP+WNE FEF
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
           I++      L + +  D      E +G A   +  ++ G+ K+V    
Sbjct: 63  ILDPNQENVLEITLM-DANYVMDETLGTATFTVSSMKVGEKKEVPFIF 109

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.8 bits (209), Expect = 1e-20
 Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 9/129 (6%)

Query: 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 316
           ++K VG L+VK+++A  L   D  GKSDP+ +L +        ++ T+  +LNP WN+ F
Sbjct: 1   DVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN---DRLQTHTVYKNLNPEWNKVF 57

Query: 317 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDT 376
            F ++D     L V ++D++G +  + +G   + L  +  G+     LK         + 
Sbjct: 58  TFPIKDI-HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL-----EQ 111

Query: 377 KYRGQVRIK 385
            ++G + ++
Sbjct: 112 AFKGVIYLE 120

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.6 bits (206), Expect = 4e-20
 Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 4/108 (3%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEF- 318
             L V +  AK L   D  G SDPY  L + P P  E  +K+KTI   LNP WNE F F 
Sbjct: 15  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74

Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
           + E +  + L V I+D +    ++ +G     + EL+   V D W KL
Sbjct: 75  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKL 121

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (184), Expect = 3e-17
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 8/112 (7%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK--KSKTINNDLNPIWNEHFEFI 319
             L V ++ AK L +++     +PY  ++  P        ++KT+   L P WN+ F + 
Sbjct: 14  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73

Query: 320 V---EDESTQHLVVRIYDDEGIQSS--ELIGCAQVRLCELEPGKVKDVWLKL 366
                +   + L + ++D   ++    E +G   + L           W KL
Sbjct: 74  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 124

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.4 bits (179), Expect = 2e-16
 Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 14/119 (11%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT-----------KKSKTINNDLNP 310
           G L + ++QA+ L  +D  G SDP+  +++ P   +            +++K +   LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 311 IWNEHFEFIV---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
            WN+   +     E    + L V ++D +   S++ +G   + L           W  L
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.4 bits (177), Expect = 3e-16
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
            TL V +++A+ L   D+ G SDPY  + +    ++  K KT       N ++NE F F 
Sbjct: 15  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74

Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
           +  ES +   +   + D E    +E+IG   +       G     W ++  
Sbjct: 75  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE--GSGGGHWKEICD 123

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 7e-16
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
               V + +A+GL   D     SDPY  + + P  +   K++ +   L+P ++E F F  
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 321 ---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK-DVWLKLVK 368
                     L   I   +     ++IG   + L  +E  + K  +  +++ 
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.3 bits (174), Expect = 8e-16
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 259 KPVGTLEVKLVQAKGL--TNKDLIGKSDPYAVLFVRPLPEKTKKSKT---INNDLNPIWN 313
           +P   L V+++  + L   NK+     DP  ++ +  +   T   +T    NN  NP W+
Sbjct: 2   RPE-RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 60

Query: 314 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             FEF V       +   + D +    ++ IG + +    L+ G      + L
Sbjct: 61  MEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG---YRHVHL 110

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (173), Expect = 1e-15
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 9/126 (7%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
             L++ ++ AK   NK       PY  + V     ++KK++  NN  +P W +    IV 
Sbjct: 6   SQLQITVISAKLKENKKNWFGPSPYVEVTVDG---QSKKTEKCNNTNSPKWKQPLTVIVT 62

Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKLVKDLDVQRDTKY 378
                 L  R++  + ++S  L+G A + + E       K+++V + L +    +  T+ 
Sbjct: 63  P--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTL-QLGGDKEPTET 119

Query: 379 RGQVRI 384
            G + I
Sbjct: 120 IGDLSI 125

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.1 bits (168), Expect = 6e-15
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 6/114 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEFI 319
           G L V +++   L   D  G SDP+  L+++P   K  K  ++     LNP +NE F + 
Sbjct: 15  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 371
           +   D + + L + ++D +  +S++ IG  Q+ +     G+    W + +K+ D
Sbjct: 75  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKD 126

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 2e-14
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 6/108 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK-KSKTINNDLNPIWNEHFEFIV 320
             L V  ++A      +  G  D Y    V       + ++      L+  W E     +
Sbjct: 26  AELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82

Query: 321 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             E+  T  L + +   +      + G  ++ L           W +L
Sbjct: 83  AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.5 bits (164), Expect = 2e-14
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
           G L V +++A  L   DL G SDPY    +     + KK KT    N LNP +NE   F 
Sbjct: 20  GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 79

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
           V  E      L + + D + I  +E+IG  +V     +P   ++ W +++ 
Sbjct: 80  VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLA 129

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.1 bits (163), Expect = 5e-14
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 6/114 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
           G L V +++AK L   D+ G SDPY  + +    ++   KK+    N LNP +NE F F 
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 371
           V  E  Q   +VV + D + I  ++ IG   V             W  ++ +  
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE--LRHWSDMLANPR 136

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 63.8 bits (154), Expect = 4e-13
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 17/118 (14%)

Query: 262 GTLEVKLVQAKGLTNKDL-----------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNP 310
           G L++K+ +A  L                    DPY  L V     +  ++ T     +P
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD--SRIGQTATKQKTNSP 63

Query: 311 IWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLKL 366
            W++ F   V +     L V      G    + +    ++  EL     +  + W+ L
Sbjct: 64  AWHDEFVTDVCNGRKIELAVFHDAPIGYD--DFVANCTIQFEELLQNGSRHFEDWIDL 119

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.1 bits (137), Expect = 9e-11
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 12/121 (9%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V + +AK    ++   K + Y  L V+      K +        P W + F F +   
Sbjct: 4   LCVGVKKAKFDGAQE---KFNTYVTLKVQ----NVKSTTIAVRGSQPSWEQDFMFEINRL 56

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLKLVKDLDVQRDTKYRGQ 381
               L V ++ ++G+    ++G   + L  +     +    WL L     +  D++  G 
Sbjct: 57  -DLGLTVEVW-NKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQA-IMADSEICGT 113

Query: 382 V 382
            
Sbjct: 114 K 114

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (125), Expect = 4e-09
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 15/102 (14%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT-----INNDLNPIWNEH-- 315
           TL + ++  + L+ +        Y  + +  LP   K+          N +NP+W E   
Sbjct: 2   TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPF 57

Query: 316 FEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
               +       L V + ++      + +G   + +  L  G
Sbjct: 58  VFEKILMPELASLRVAVMEEGN----KFLGHRIIPINALNSG 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	390
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.88
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.87
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.86
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.81
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.81
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.81
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.8
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.78
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.77
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.75
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.73
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.72
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.72
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.72
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.7
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.7
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.69
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.62
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.61
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.37
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	90.65

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=2.7e-22  Score=163.68  Aligned_cols=121  Identities=34%  Similarity=0.588  Sum_probs=105.4

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccC-CCCCCeeeeEEEEEEecCCCCEEEEEEEEcCC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~  337 (390)
                      .|.|.|+|+|++|++|+..+..|++||||+++++   .+..+|++++ ++.||.|||+|.|.+.+. ...|.|+|||+|.
T Consensus         7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~---~~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~   82 (136)
T d1wfja_           7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDV   82 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESS---SCEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSS
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEe---eeeEEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEecC
Confidence            6899999999999999999999999999999986   4567788875 689999999999999875 4579999999999


Q ss_pred             CCCCceeEEEEEEccccC-CCceeeEEEEcccccccCCCCeeeeEEEEE--Eeec
Q 016385          338 IQSSELIGCAQVRLCELE-PGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPPY  389 (390)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~-~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p~  389 (390)
                      .++|++||++.++|.++. .+.....|+.+.+      +++.+|+|+++  |.|.
T Consensus        83 ~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~------~~~~~G~i~l~l~~~p~  131 (136)
T d1wfja_          83 GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK------DEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             CTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE------TTEEEEEEEEEEEEEEC
T ss_pred             CCCCCEEEEEEEEhHHhcccCCcCcEEEEecC------CCccCEEEEEEEEEEeC
Confidence            999999999999999874 4556678998854      56788999999  9885

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.9e-22  Score=161.23  Aligned_cols=118  Identities=28%  Similarity=0.564  Sum_probs=102.9

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~  338 (390)
                      ++.|.|+|+|++|++|+.++..|.+||||++.++   .++++|++++++.||.|||+|.|.+.++ .+.|.++|||++..
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~   78 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELG---NDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGD   78 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET---TEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETT
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcC---CeEEEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCC
Confidence            5789999999999999999999999999999997   5788999999999999999999999876 46899999999998


Q ss_pred             CCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          339 QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      ++|++||++.++++++..+.  ..|+.|...   ..+++.+|+|+++
T Consensus        79 ~~d~~lG~~~i~l~~l~~~~--~~~~~l~~~---~~~~~~~G~i~l~  120 (126)
T d2ep6a1          79 KPPDFLGKVAIPLLSIRDGQ--PNCYVLKNK---DLEQAFKGVIYLE  120 (126)
T ss_dssp             EEEEECCBCEEEGGGCCSSC--CEECCCBCS---CTTSCCSSEEEEE
T ss_pred             cCcceEEEEEEEHHHCCCCC--ceEEEcccc---CCCCceeEEEEEE
Confidence            88999999999999987664  468877542   2245567999988

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.6e-21  Score=156.79  Aligned_cols=119  Identities=26%  Similarity=0.526  Sum_probs=103.0

Q ss_pred             eeEEEEEEeeecCCccc---cCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCC
Q 016385          261 VGTLEVKLVQAKGLTNK---DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~  337 (390)
                      .+.|+|+|++|++|+..   |..|.+||||++.+++...++++|++++++.||.|||+|.|.+.+.....|.++|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            46899999999999863   456899999999998655678899999999999999999999988877899999999987


Q ss_pred             CCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE--Eee
Q 016385          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPP  388 (390)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p  388 (390)
                      . +|++||++.++|+++..+...+.|++|.+        ...|+|+++  +.|
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~--------~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQ--------VTEMVLEMSLEVAS  125 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEETT--------TEEEEEEEEEECCC
T ss_pred             C-CCCeEEEEEEEHHHccCCCeEEEEEEccC--------CCeEEEEEEEEEEe
Confidence            5 58999999999999999999999999943        356777776  554

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=8.8e-20  Score=149.80  Aligned_cols=109  Identities=31%  Similarity=0.508  Sum_probs=98.7

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDE  336 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d  336 (390)
                      ...+.|+|+|++|++|+.++..|.+||||++++.+.+.+.++|++++++.||.|||+|.|.+...  ....|.|+|||++
T Consensus        31 ~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d  110 (143)
T d1rsya_          31 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  110 (143)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcC
Confidence            45679999999999999999889999999999987667788999999999999999999987543  4668999999999


Q ss_pred             CCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (390)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (390)
                      ..+++++||++.++|.++..+...++|++|+
T Consensus       111 ~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  141 (143)
T d1rsya_         111 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  141 (143)
T ss_dssp             SSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             CCCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence            9999999999999999998888889999995

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.81  E-value=2.2e-19  Score=145.94  Aligned_cols=115  Identities=20%  Similarity=0.348  Sum_probs=96.2

Q ss_pred             ceeEEEEEEeeecCCcccc-----------CCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEE
Q 016385          260 PVGTLEVKLVQAKGLTNKD-----------LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHL  328 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d-----------~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L  328 (390)
                      -.|.|+|+|.+|++|++.+           ..+.+||||+++++  +....+|++++++.||.|||+|.|.+.+.  +.|
T Consensus         4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~--~~~~~~T~~~~~t~~P~Wne~f~f~v~~~--~~l   79 (136)
T d1gmia_           4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD--DSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKI   79 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEE
T ss_pred             EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeC--CCcCcEeeEEcCCCCccCccEEEEEEecC--Cce
Confidence            4699999999999998754           34678999999996  23456899999999999999999999754  589


Q ss_pred             EEEEEEcCCCCCCceeEEEEEEccccCCC--ceeeEEEEcccccccCCCCeeeeEEEEE--Eee
Q 016385          329 VVRIYDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPP  388 (390)
Q Consensus       329 ~v~v~d~d~~~~d~~lG~~~v~l~~l~~~--~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p  388 (390)
                      .++|||++.+++|++||++.++++++..+  ...+.|++|.+          .|++++.  +.|
T Consensus        80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p----------~G~v~l~v~~~~  133 (136)
T d1gmia_          80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP----------EGKVYVIIDLSG  133 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS----------SCEEEEEEEEEE
T ss_pred             EEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC----------CcEEEEEEEEEe
Confidence            99999999999999999999999998544  45789999953          5777776  655

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=1.3e-19  Score=146.59  Aligned_cols=108  Identities=34%  Similarity=0.524  Sum_probs=94.3

Q ss_pred             ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecC--CCceEeeeccCCCCCCeeeeEEEEEEecC-CCCEEEEEEEEcC
Q 016385          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE  336 (390)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~~~nP~w~e~f~f~v~~~-~~~~L~v~v~d~d  336 (390)
                      ..+.|.|+|++|++|+.+|..|.+||||++++.+.  +..+++|++++++.||.|||+|.|.+.+. ..+.|.|+|||+|
T Consensus        13 ~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d   92 (132)
T d1a25a_          13 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD   92 (132)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred             cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecC
Confidence            35789999999999999999999999999998643  24578999999999999999999998754 3458999999999


Q ss_pred             CCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      ..++|++||++.+++.++..+ ..++|++|..
T Consensus        93 ~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~  123 (132)
T d1a25a_          93 LTSRNDFMGSLSFGISELQKA-GVDGWFKLLS  123 (132)
T ss_dssp             SSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred             CCCCCcEeEEEEEeHHHcCCC-CCCeEEECCC
Confidence            999999999999999998765 4679999975

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.8e-19  Score=142.83  Aligned_cols=123  Identities=24%  Similarity=0.326  Sum_probs=97.0

Q ss_pred             eeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCC
Q 016385          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~  340 (390)
                      .+.|.|+|++|++++..+..+.+||||++.++   .+.++|++++++.||.|||.|.|.+.+  .+.|.|+|||++.+++
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~   79 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVD---GQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKS   79 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSC
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEEC---CeEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCC
Confidence            37899999999999988888899999999997   678999999999999999999999864  4589999999999999


Q ss_pred             CceeEEEEEEccccC---CCceeeEEEEcccccccCCCCeeeeEEEEE--Eeec
Q 016385          341 SELIGCAQVRLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPPY  389 (390)
Q Consensus       341 d~~lG~~~v~l~~l~---~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p~  389 (390)
                      |++||++.++|.++.   .+.....|+.+... ...+.....|+|.+.  +...
T Consensus        80 d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~-~~~~~~~~~G~L~v~l~~~~~  132 (133)
T d2nq3a1          80 DVLLGTAALDIYETLKSNNMKLEEVVVTLQLG-GDKEPTETIGDLSICLDGLQL  132 (133)
T ss_dssp             CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEE-ESSCTTSEEEEEEEEEESEEC
T ss_pred             CceEEEEEEEHHHhhhhcCCceeeEEEEEecC-CCCCCceEEEEEEEEEeeEEc
Confidence            999999999998873   23333344443211 123456678999887  5543

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=2.9e-19  Score=144.21  Aligned_cols=110  Identities=29%  Similarity=0.452  Sum_probs=93.9

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcC
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDE  336 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d  336 (390)
                      ...+.|.|+|++|++|+.++..|.+||||++++.+.+.++++|++++++.||.|||+|.|.+...  ....|.|+|||++
T Consensus        15 ~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~   94 (130)
T d1dqva1          15 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   94 (130)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcC
Confidence            56789999999999999999899999999999976666789999999999999999999998643  4567999999999


Q ss_pred             CCCCCceeEEEEEEccc-cC-CCceeeEEEEccc
Q 016385          337 GIQSSELIGCAQVRLCE-LE-PGKVKDVWLKLVK  368 (390)
Q Consensus       337 ~~~~d~~lG~~~v~l~~-l~-~~~~~~~w~~L~~  368 (390)
                      .+++|++||++.+++.. +. .......|++|.+
T Consensus        95 ~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          95 RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             CCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            99999999999998643 33 2334567999964

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=2.1e-19  Score=147.33  Aligned_cols=109  Identities=23%  Similarity=0.441  Sum_probs=93.9

Q ss_pred             eeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC-----------ceEeeeccCCCCCCeeeeEEEEEEec---CCCC
Q 016385          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE-----------KTKKSKTINNDLNPIWNEHFEFIVED---ESTQ  326 (390)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~-----------~~~kT~v~~~~~nP~w~e~f~f~v~~---~~~~  326 (390)
                      .|.|.|+|++|++|+.+|..|.+||||++++.+...           ++++|++++++.||.|||+|.|....   ....
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            589999999999999999999999999999854322           23579999999999999999997432   2466


Q ss_pred             EEEEEEEEcCCCCCCceeEEEEEEccccCCCceeeEEEEcccc
Q 016385          327 HLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (390)
Q Consensus       327 ~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~  369 (390)
                      .|.++|||++.+++|++||++.++|.++..+...+.|++|.+.
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~  139 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ  139 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence            8999999999999999999999999999888788899999764

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.1e-17  Score=134.95  Aligned_cols=118  Identities=19%  Similarity=0.331  Sum_probs=89.7

Q ss_pred             eEEEEEEeeecCCcc--ccCCCCCCcEEEEEEec--CCCceEeeeccCC-CCCCeeeeEEEEEEecCCCCEEEEEEEEcC
Q 016385          262 GTLEVKLVQAKGLTN--KDLIGKSDPYAVLFVRP--LPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDE  336 (390)
Q Consensus       262 g~L~V~v~~a~~L~~--~d~~g~~dpyv~v~~~~--~~~~~~kT~v~~~-~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d  336 (390)
                      ..|+|+|++|++|+.  .+..+.+||||++++.+  .+.+.++|+++++ ++||.|||+|.|.+..+....|.++|||+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            479999999999975  44567899999999853  2346788888754 579999999999988777778999999999


Q ss_pred             CCCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK  385 (390)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~  385 (390)
                      ..++|++||++.++|+++.+|   ..|++|....   ...-..+.|.++
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~---g~~~~~~~L~v~  126 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKN---GDQHPSATLFVK  126 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCE---EEEEEEECTT---SCEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEEEEeccCCC---CEEEECCCCC---cCCCCCCEEEEE
Confidence            999999999999999999765   3588885421   122234565554

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=1.5e-17  Score=132.99  Aligned_cols=99  Identities=20%  Similarity=0.329  Sum_probs=84.3

Q ss_pred             eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCC
Q 016385          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  341 (390)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d  341 (390)
                      +.|.|+|.+|++|..++   +.||||++.++   +.+.+|.+++ +.||.|||+|.|.+.++ .+.|.|+|||++.. +|
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~---~~k~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~-~d   72 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQ---NVKSTTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLI-WD   72 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEET---TEEEECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSS-CE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeC---CEEEEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCc-CC
Confidence            68999999999999876   67999999997   5678888876 55999999999999877 46899999999876 59


Q ss_pred             ceeEEEEEEccccCCC--ceeeEEEEcccc
Q 016385          342 ELIGCAQVRLCELEPG--KVKDVWLKLVKD  369 (390)
Q Consensus       342 ~~lG~~~v~l~~l~~~--~~~~~w~~L~~~  369 (390)
                      ++||++.++|+++..+  ...+.|++|...
T Consensus        73 ~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~  102 (128)
T d2cjta1          73 TMVGTVWIPLRTIRQSNEEGPGEWLTLDSQ  102 (128)
T ss_dssp             EEEEEEEEEGGGSCBCSSCCCCEEEECBC-
T ss_pred             cceEEEEEEehhhccCCCCCCCeeEECCcc
Confidence            9999999999998533  456789999653

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.6e-17  Score=135.22  Aligned_cols=107  Identities=16%  Similarity=0.137  Sum_probs=92.6

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC-CceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEc
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP-EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  335 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~  335 (390)
                      ...+.|.|+|++|++|.   ..+.+||||++++.+.. ...++|++++++.||.|||+|.|.+...  ....|.|+|||+
T Consensus        23 ~~~~~L~V~v~~a~~L~---~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~   99 (138)
T d1wfma_          23 CQKAELFVTRLEAVTSN---HDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTC   99 (138)
T ss_dssp             TTTTEEEEEEEEEECCC---CSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred             CCCCEEEEEEEEcCCCC---CCCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeee
Confidence            45689999999999995   35779999999997543 3367899999999999999999998643  467899999999


Q ss_pred             CCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      +.++++++||++.++|.++..+...+.|++|.+
T Consensus       100 ~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~  132 (138)
T d1wfma_         100 DRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             CSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             cccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence            999999999999999999987777899999976

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.2e-17  Score=132.64  Aligned_cols=109  Identities=20%  Similarity=0.302  Sum_probs=90.2

Q ss_pred             cceeEEEEEEeeecCCccccCCCC-CCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC---CCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~-~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~---~~~~L~v~v~d  334 (390)
                      ...+.|.|+|++|++|+.++..+. +||||++++.+.+.+.++|++++++.||.|||+|.|.....   ....|+|+|||
T Consensus        19 ~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d   98 (138)
T d1ugka_          19 FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILS   98 (138)
T ss_dssp             GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEE
Confidence            466789999999999998876654 79999999987667788999999999999999999964322   34589999999


Q ss_pred             cCCCCCCceeEEEEEEccccCCCc-eeeEEEEcc
Q 016385          335 DEGIQSSELIGCAQVRLCELEPGK-VKDVWLKLV  367 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~~-~~~~w~~L~  367 (390)
                      +|.+++|++||++.++|+++...+ ....|..+.
T Consensus        99 ~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~  132 (138)
T d1ugka_          99 FDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII  132 (138)
T ss_dssp             ECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred             CCCCCCCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence            999999999999999999985443 344665553

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.5e-17  Score=131.68  Aligned_cols=108  Identities=24%  Similarity=0.453  Sum_probs=86.3

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEE-EecC--CCCEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVRIY  333 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~-v~~~--~~~~L~v~v~  333 (390)
                      ...+.|+|+|++|++|+..+..+.+||||++++.+..  ...++|++++++.||.|||+|.|. +...  ....|.|+||
T Consensus        11 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~   90 (125)
T d2bwqa1          11 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   90 (125)
T ss_dssp             TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEE
Confidence            4567999999999999998888999999999996543  346899999999999999999996 4322  3558999999


Q ss_pred             EcCCC--CCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385          334 DDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (390)
Q Consensus       334 d~d~~--~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (390)
                      |++..  +++++||++.++++++.... ..+|++|+
T Consensus        91 d~~~~~~~~~~~iG~~~i~l~~~~~~~-~~~Wy~L~  125 (125)
T d2bwqa1          91 DQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  125 (125)
T ss_dssp             EC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             ECCCCCCCCCeeEEEEEEEchhcCCCC-CCEEEeCc
Confidence            99975  34569999999999986554 35799983

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=7.9e-17  Score=133.97  Aligned_cols=110  Identities=31%  Similarity=0.453  Sum_probs=93.2

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCc--eEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d  334 (390)
                      +..|.|.|+|++|++|+..+..+.+||||++++.+.+.+  .++|++++++.||.|||+|.|.+...  ....|.++|||
T Consensus        22 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d  101 (157)
T d1uowa_          22 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD  101 (157)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcc
Confidence            456899999999999999888899999999999754433  45799999999999999999998754  35589999999


Q ss_pred             cCCCCCCceeEEEEEEcccc------------CCCceeeEEEEccc
Q 016385          335 DEGIQSSELIGCAQVRLCEL------------EPGKVKDVWLKLVK  368 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l------------~~~~~~~~w~~L~~  368 (390)
                      ++.++++++||++.+++.+.            .++.....|++|..
T Consensus       102 ~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~  147 (157)
T d1uowa_         102 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (157)
T ss_dssp             CCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             cCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence            99999999999999999652            23455679999965

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=7.1e-17  Score=131.31  Aligned_cols=96  Identities=25%  Similarity=0.317  Sum_probs=77.1

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d  334 (390)
                      +..|.|.|+|++|++|+.++..+.+||||++++.+.+.  .+++|++++++.||.|||+|.|.+...  ....|.|+|||
T Consensus        12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d   91 (138)
T d1w15a_          12 STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLD   91 (138)
T ss_dssp             TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEe
Confidence            45679999999999999999889999999999865433  356899999999999999999988543  34579999999


Q ss_pred             cCCCCCCceeEEEEEEcccc
Q 016385          335 DEGIQSSELIGCAQVRLCEL  354 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l  354 (390)
                      ++.++++++||++.+++.+.
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          92 SERGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             CCTTSCCEEEEEEEESTTCC
T ss_pred             CCCCCCCCEEEEEEEcchhC
Confidence            99999999999999998753

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=1.5e-16  Score=129.08  Aligned_cols=108  Identities=24%  Similarity=0.419  Sum_probs=89.1

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d  334 (390)
                      +..|.|.|+|++|++|+..+..+.+||||++++.+.+  ..+++|++++++.||.|||+|.|.+...  ....|.+.+||
T Consensus        12 ~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~   91 (137)
T d2cm5a1          12 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD   91 (137)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeee
Confidence            4678999999999999998888999999999986532  3467899999999999999999998643  45689999999


Q ss_pred             cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      ++..+++++||++.+++.++.  ...++|++|.+
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~~  123 (137)
T d2cm5a1          92 YDIGKSNDYIGGCQLGISAKG--ERLKHWYECLK  123 (137)
T ss_dssp             CCSSSCCEEEEEEEEETTCCH--HHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEEEeCccccC--cchhhhhhHhh
Confidence            999999999999999997642  23345655543

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.6e-15  Score=120.28  Aligned_cols=107  Identities=13%  Similarity=0.244  Sum_probs=83.0

Q ss_pred             EEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCC
Q 016385          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  341 (390)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d  341 (390)
                      +.|.+..+..++  ...+.+||||++++.+..  .+.++|+++++|+||.|||+|+|.+.+  .+.|.+.|||+|    +
T Consensus         7 ~~~~~~~~~~~~--~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d----d   78 (123)
T d1bdya_           7 ISFNSYELGSLQ--AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA----E   78 (123)
T ss_dssp             EEEEEEECCTTC--CCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET----T
T ss_pred             EEEEEeecccCC--CCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc----c
Confidence            344445555544  346889999999996421  235678889999999999999999975  458999999975    6


Q ss_pred             ceeEEEEEEcccc-----CCCceeeEEEEcccccccCCCCeeeeEEEEE--Eee
Q 016385          342 ELIGCAQVRLCEL-----EPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPP  388 (390)
Q Consensus       342 ~~lG~~~v~l~~l-----~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p  388 (390)
                      +++|.+.+++.++     ..+...+.|++|.          ++|+|+++  |++
T Consensus        79 ~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~----------~~Gkl~l~v~~f~  122 (123)
T d1bdya_          79 DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ----------PQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB----------SSCEEEEEEEEEE
T ss_pred             cccCccEEehhheeeccccCCCcccEEEeCC----------CCEEEEEEEEEec
Confidence            8999999999887     3467889999994          46999988  653

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=6.3e-17  Score=132.79  Aligned_cols=109  Identities=28%  Similarity=0.448  Sum_probs=89.7

Q ss_pred             cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEec--CCCCEEEEEEEE
Q 016385          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYD  334 (390)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~--~~~~~L~v~v~d  334 (390)
                      +..|.|.|+|++|++|+..+..+.+||||++++.+.+.  ..++|++++++.||.|||+|.|.+..  .....|.|.+||
T Consensus        17 ~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d   96 (145)
T d1dqva2          17 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVD   96 (145)
T ss_dssp             TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEE
T ss_pred             CCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEe
Confidence            56789999999999999988889999999999875433  35789999999999999999998753  245679999999


Q ss_pred             cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      ++..+++++||++.++++.+.. ...++|++|..
T Consensus        97 ~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~l~~  129 (145)
T d1dqva2          97 YDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLA  129 (145)
T ss_dssp             CCSSSCCEEEEECCCSSCTTCH-HHHHHHHTSSS
T ss_pred             cCCCCCCcEEEEEEECchHcCc-hhhHHHHHHHh
Confidence            9999999999999999976532 23456766643

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.2e-12  Score=103.16  Aligned_cols=95  Identities=21%  Similarity=0.395  Sum_probs=71.8

Q ss_pred             EEEEEEeeecCCccccCCCCCCcEEEEEEec---CCCceEeeec--cCCCCCCeeeeE-EEE-EEecCCCCEEEEEEEEc
Q 016385          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP---LPEKTKKSKT--INNDLNPIWNEH-FEF-IVEDESTQHLVVRIYDD  335 (390)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~~~kT~v--~~~~~nP~w~e~-f~f-~v~~~~~~~L~v~v~d~  335 (390)
                      .|+|+|++|++|+.+    +.||||++++-+   +..++++|++  .+++.||.|||+ |.+ .+..++...|+|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            589999999999854    489999999853   2233344444  478899999975 444 45555566899999997


Q ss_pred             CCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (390)
Q Consensus       336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (390)
                      +    |++||++.+|++.+.+|-   .|.+|..
T Consensus        78 d----~~~lG~~~ipl~~l~~Gy---R~vpL~~  103 (122)
T d2zkmx2          78 G----NKFLGHRIIPINALNSGY---HHLCLHS  103 (122)
T ss_dssp             T----TEEEEEEEEEGGGBCCEE---EEEEEEC
T ss_pred             C----CCEEEEEEEEcccCcCCc---eEEEccC
Confidence            5    789999999999998764   4567754