Citrus Sinensis ID: 016386

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKGYIHSSILCLGCSIIPVGNLNGFLVTQKMQSNP
cccccccccEEEEEccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccEEEcccccccccEEEEcccHHcccccccccEEEEEcccEEEEEEccccccccEEEEEcccccccHHHHHHHHHccccEEEEccccccccccccHHHHHHHHcccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHcccc
cccEcccccEEEEcccEEEEEcHccccccHHHHccccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHEcccEEEcccccccEEEEEccccEEEcccccccEEEEEcccEEEEEEEEEcccccEEEEEEEEccccHHHHHHHHHHccEEEEccHHHccccccccHHHccHHHHccccccccccEccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHccccccHHHHHHHHHHHHccccc
mfsfhvsgeviisqepyvcvpnnsssisrcdgcfassnlkkcsacQVVWycgsncqkldwkLHRLECQVLSrldkekrksvtPSIRLMLKLYLRRKlqndnvipstttdNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTicnselrplgtglypVISIinhsclpnavlVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYlftctcprciklgqfddiQESAIlegyrckddgcsgfllrdsddkgftcqqcglvrsKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKGYIHSSilclgcsiipvgnlnGFLVTQKMQSNP
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQvlsrldkekrksvtpsiRLMLKLYLRrklqndnvipstttDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLlrdsddkgftCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKGYIHSSILCLGCSIIPVGNLNGFLVTQKMQSNP
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIrlmlklylrrklQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKGYIHSSILCLGCSIIPVGNLNGFLVTQKMQSNP
****HVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKGYIHSSILCLGCSIIPVGNLNGFLVT*******
**SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKGYIHSSILCLGCSIIPVGNLNGFLVTQK*****
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKGYIHSSILCLGCSIIPVGNLNGFLVTQKMQSNP
*FSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKGYIHSSILCLGCSIIPVGNLNGFLVTQKMQ***
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MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKGYIHSSILCLGCSIIPVGNLNGFLVTQKMQSNP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query390 2.2.26 [Sep-21-2011]
Q7XJS0480 Histone-lysine N-methyltr yes no 0.897 0.729 0.68 1e-146
E1C5V0436 N-lysine methyltransferas yes no 0.610 0.545 0.336 2e-34
Q8R5A0433 N-lysine methyltransferas yes no 0.605 0.545 0.344 4e-34
Q7M6Z3433 N-lysine methyltransferas yes no 0.605 0.545 0.34 6e-34
Q7ZXV5430 N-lysine methyltransferas N/A no 0.602 0.546 0.327 4e-33
Q5RGL7434 N-lysine methyltransferas yes no 0.882 0.792 0.300 1e-32
Q0P585433 N-lysine methyltransferas yes no 0.602 0.542 0.323 2e-32
Q6GN68430 N-lysine methyltransferas N/A no 0.602 0.546 0.327 3e-32
C3RZA1433 N-lysine methyltransferas yes no 0.597 0.538 0.321 8e-32
Q9NRG4433 N-lysine methyltransferas yes no 0.597 0.538 0.317 3e-31
>sp|Q7XJS0|ASHR1_ARATH Histone-lysine N-methyltransferase ASHR1 OS=Arabidopsis thaliana GN=ASHR1 PE=2 SV=2 Back     alignment and function desciption
 Score =  517 bits (1332), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 238/350 (68%), Positives = 298/350 (85%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVI+SQ+PY+CVPNN+SS SRCDGCF ++NLKKCSACQVVWYCGS+CQK +WKLHR EC
Sbjct: 34  GEVILSQKPYICVPNNTSSESRCDGCFKTNNLKKCSACQVVWYCGSSCQKSEWKLHRDEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
           + L+RL+KEKRK VTP+IRLM++LY++R LQN+ V+P TTTDNYSLVEALV+HMS+IDEK
Sbjct: 94  KALTRLEKEKRKFVTPTIRLMVRLYIKRNLQNEKVLPITTTDNYSLVEALVSHMSEIDEK 153

Query: 128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
           Q+LLYAQ+ANLVNLILQ+P + + EIAENFSK +CNAH+IC+SELRP G GL+P++SIIN
Sbjct: 154 QMLLYAQMANLVNLILQFPSVDLREIAENFSKFSCNAHSICDSELRPQGIGLFPLVSIIN 213

Query: 188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPR 247
           HSC PNAVLVFE ++AVVRA+ ++ K +E+ ISYIETAGST+TRQK+LKEQYLF C C R
Sbjct: 214 HSCSPNAVLVFEEQMAVVRAMDNISKDSEITISYIETAGSTLTRQKSLKEQYLFHCQCAR 273

Query: 248 CIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEV 307
           C   G+  DI+ESAILEGYRC ++ C+GFLLRD ++KGF CQ+C L+RSKEE+KK+AS++
Sbjct: 274 CSNFGKPHDIEESAILEGYRCANEKCTGFLLRDPEEKGFVCQKCLLLRSKEEVKKLASDL 333

Query: 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIK 357
             +S+K     S  + Q  +  YK IEKLQ KLYH FS+ LM+TREKL+K
Sbjct: 334 KTVSEKAPTSPSAEDKQAAIELYKTIEKLQVKLYHSFSIPLMRTREKLLK 383
Histone methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|E1C5V0|SMYD2_CHICK N-lysine methyltransferase SMYD2 OS=Gallus gallus GN=SMYD2 PE=3 SV=1 Back     alignment and function description
>sp|Q8R5A0|SMYD2_MOUSE N-lysine methyltransferase SMYD2 OS=Mus musculus GN=Smyd2 PE=1 SV=1 Back     alignment and function description
>sp|Q7M6Z3|SMYD2_RAT N-lysine methyltransferase SMYD2 OS=Rattus norvegicus GN=Smyd2 PE=2 SV=1 Back     alignment and function description
>sp|Q7ZXV5|SMY2A_XENLA N-lysine methyltransferase SMYD2-A OS=Xenopus laevis GN=smyd2-a PE=2 SV=1 Back     alignment and function description
>sp|Q5RGL7|SMY2B_DANRE N-lysine methyltransferase SMYD2-B OS=Danio rerio GN=smyd2b PE=2 SV=2 Back     alignment and function description
>sp|Q0P585|SMYD2_BOVIN N-lysine methyltransferase SMYD2 OS=Bos taurus GN=SMYD2 PE=2 SV=1 Back     alignment and function description
>sp|Q6GN68|SMY2B_XENLA N-lysine methyltransferase SMYD2-B OS=Xenopus laevis GN=smyd2-b PE=2 SV=1 Back     alignment and function description
>sp|C3RZA1|SMYD2_PIG N-lysine methyltransferase SMYD2 OS=Sus scrofa GN=SMYD2 PE=2 SV=1 Back     alignment and function description
>sp|Q9NRG4|SMYD2_HUMAN N-lysine methyltransferase SMYD2 OS=Homo sapiens GN=SMYD2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
255545512482 protein with unknown function [Ricinus c 0.897 0.726 0.782 1e-166
302141868480 unnamed protein product [Vitis vinifera] 0.894 0.727 0.78 1e-165
225459467477 PREDICTED: histone-lysine N-methyltransf 0.887 0.725 0.777 1e-163
449445136482 PREDICTED: histone-lysine N-methyltransf 0.897 0.726 0.725 1e-150
224082230458 SET domain protein [Populus trichocarpa] 0.838 0.713 0.725 1e-149
357461631 511 Histone-lysine N-methyltransferase ASHR1 0.894 0.682 0.650 1e-146
30680137480 histone-lysine N-methyltransferase ASHR1 0.897 0.729 0.68 1e-144
297836508483 hypothetical protein ARALYDRAFT_319740 [ 0.897 0.724 0.68 1e-144
356507670484 PREDICTED: histone-lysine N-methyltransf 0.894 0.721 0.726 1e-143
388518229477 unknown [Medicago truncatula] 0.807 0.660 0.581 1e-125
>gi|255545512|ref|XP_002513816.1| protein with unknown function [Ricinus communis] gi|223546902|gb|EEF48399.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 274/350 (78%), Positives = 315/350 (90%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVIISQEPYVCVPNNS++ SRCD CF+SSN+KKCSACQV WYCGS+CQKL+WKLHR+EC
Sbjct: 34  GEVIISQEPYVCVPNNSATESRCDRCFSSSNVKKCSACQVAWYCGSSCQKLEWKLHRIEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
           + LS+LDK++RK VTPSIRLM++L +RRKLQ++ +I ST TDNY LVEALVAHM DIDEK
Sbjct: 94  EALSKLDKDRRKYVTPSIRLMVRLLIRRKLQSEKIISSTATDNYDLVEALVAHMKDIDEK 153

Query: 128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
           QL+LYAQ+ANLVNLIL+WP+++I EIAENFSKLACNAHTIC+SELRPLGTGLYPV+SIIN
Sbjct: 154 QLVLYAQMANLVNLILRWPDVNIKEIAENFSKLACNAHTICDSELRPLGTGLYPVVSIIN 213

Query: 188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPR 247
           HSCLPNAVLVF+GRLAVV  VQH+PKG+EVLISYIETAGSTMTRQKALK+QY FTCTCPR
Sbjct: 214 HSCLPNAVLVFDGRLAVVHTVQHIPKGSEVLISYIETAGSTMTRQKALKQQYFFTCTCPR 273

Query: 248 CIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEV 307
           CIK+G  DDIQESAILEGYRCKD+ C+GFLLRDSDD+GF CQQCGL+RSKEE+KK A+E+
Sbjct: 274 CIKMGLLDDIQESAILEGYRCKDNRCNGFLLRDSDDRGFICQQCGLLRSKEEVKKSAAEI 333

Query: 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIK 357
              S K     S GN QE VS YK+IEKLQ+KL HPFS +LMQTREKL+K
Sbjct: 334 KATSDKASKSISSGNLQEAVSIYKLIEKLQRKLCHPFSTSLMQTREKLLK 383

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302141868|emb|CBI19071.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225459467|ref|XP_002284386.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449445136|ref|XP_004140329.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Cucumis sativus] gi|449502473|ref|XP_004161650.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224082230|ref|XP_002306611.1| SET domain protein [Populus trichocarpa] gi|222856060|gb|EEE93607.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357461631|ref|XP_003601097.1| Histone-lysine N-methyltransferase ASHR1 [Medicago truncatula] gi|355490145|gb|AES71348.1| Histone-lysine N-methyltransferase ASHR1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|30680137|ref|NP_849969.1| histone-lysine N-methyltransferase ASHR1 [Arabidopsis thaliana] gi|94707144|sp|Q7XJS0.2|ASHR1_ARATH RecName: Full=Histone-lysine N-methyltransferase ASHR1; AltName: Full=ASH1-related protein 1; AltName: Full=Protein SET DOMAIN GROUP 37 gi|145651792|gb|ABP88121.1| At2g17900 [Arabidopsis thaliana] gi|330251606|gb|AEC06700.1| histone-lysine N-methyltransferase ASHR1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297836508|ref|XP_002886136.1| hypothetical protein ARALYDRAFT_319740 [Arabidopsis lyrata subsp. lyrata] gi|297331976|gb|EFH62395.1| hypothetical protein ARALYDRAFT_319740 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356507670|ref|XP_003522587.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Glycine max] Back     alignment and taxonomy information
>gi|388518229|gb|AFK47176.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
TAIR|locus:2827831480 SDG37 "SET domain group 37" [A 0.897 0.729 0.66 4.6e-128
UNIPROTKB|E1C5V0436 SMYD2 "N-lysine methyltransfer 0.6 0.536 0.334 1.5e-33
MGI|MGI:1915889433 Smyd2 "SET and MYND domain con 0.602 0.542 0.338 2e-33
RGD|727785433 Smyd2 "SET and MYND domain con 0.605 0.545 0.328 8.5e-33
ZFIN|ZDB-GENE-041001-201434 smyd2b "SET and MYND domain co 0.887 0.797 0.288 1.4e-32
UNIPROTKB|Q7ZXV5430 smyd2-a "N-lysine methyltransf 0.602 0.546 0.323 9.8e-32
UNIPROTKB|Q0P585433 SMYD2 "N-lysine methyltransfer 0.607 0.547 0.321 1.3e-31
UNIPROTKB|C3RZA1433 SMYD2 "N-lysine methyltransfer 0.602 0.542 0.318 3.3e-31
UNIPROTKB|F1S2Y3431 SMYD2 "N-lysine methyltransfer 0.602 0.545 0.318 3.3e-31
UNIPROTKB|Q6GN68430 smyd2-b "N-lysine methyltransf 0.602 0.546 0.315 4.2e-31
TAIR|locus:2827831 SDG37 "SET domain group 37" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1257 (447.5 bits), Expect = 4.6e-128, P = 4.6e-128
 Identities = 231/350 (66%), Positives = 287/350 (82%)

Query:     8 GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
             GEVI+SQ+PY+CVPNN+SS SRCDGCF ++NLKKCSACQVVWYCGS+CQK +WKLHR EC
Sbjct:    34 GEVILSQKPYICVPNNTSSESRCDGCFKTNNLKKCSACQVVWYCGSSCQKSEWKLHRDEC 93

Query:    68 QVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
             + L+RL+KEKRK VTP+I            QN+ V+P TTTDNYSLVEALV+HMS+IDEK
Sbjct:    94 KALTRLEKEKRKFVTPTIRLMVRLYIKRNLQNEKVLPITTTDNYSLVEALVSHMSEIDEK 153

Query:   128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
             Q+LLYAQ+ANLVNLILQ+P + + EIAENFSK +CNAH+IC+SELRP G GL+P++SIIN
Sbjct:   154 QMLLYAQMANLVNLILQFPSVDLREIAENFSKFSCNAHSICDSELRPQGIGLFPLVSIIN 213

Query:   188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPR 247
             HSC PNAVLVFE ++AVVRA+ ++ K +E+ ISYIETAGST+TRQK+LKEQYLF C C R
Sbjct:   214 HSCSPNAVLVFEEQMAVVRAMDNISKDSEITISYIETAGSTLTRQKSLKEQYLFHCQCAR 273

Query:   248 CIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEV 307
             C   G+  DI+ESAILEGYRC ++ C+GFLLRD ++KGF CQ+C L+RSKEE+KK+AS++
Sbjct:   274 CSNFGKPHDIEESAILEGYRCANEKCTGFLLRDPEEKGFVCQKCLLLRSKEEVKKLASDL 333

Query:   308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIK 357
               +S+K     S  + Q  +  YK IEKLQ KLYH FS+ LM+TREKL+K
Sbjct:   334 KTVSEKAPTSPSAEDKQAAIELYKTIEKLQVKLYHSFSIPLMRTREKLLK 383
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA
UNIPROTKB|E1C5V0 SMYD2 "N-lysine methyltransferase SMYD2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1915889 Smyd2 "SET and MYND domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|727785 Smyd2 "SET and MYND domain containing 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041001-201 smyd2b "SET and MYND domain containing 2b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q7ZXV5 smyd2-a "N-lysine methyltransferase SMYD2-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P585 SMYD2 "N-lysine methyltransferase SMYD2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|C3RZA1 SMYD2 "N-lysine methyltransferase SMYD2" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1S2Y3 SMYD2 "N-lysine methyltransferase SMYD2" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q6GN68 smyd2-b "N-lysine methyltransferase SMYD2-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XJS0ASHR1_ARATH2, ., 1, ., 1, ., 4, 30.680.89740.7291yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
pfam0175339 pfam01753, zf-MYND, MYND finger 5e-10
pfam00856113 pfam00856, SET, SET domain 6e-09
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 1e-07
>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger Back     alignment and domain information 
 Score = 54.0 bits (130), Expect = 5e-10
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 30 CDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
          C  C   +  L +CS C+ V+YC   CQK DW  H+ EC
Sbjct: 1  CAVCGKEALKLLRCSRCKSVYYCSKECQKADWPYHKKEC 39

Length = 39
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 390
KOG2084482 consensus Predicted histone tail methylase contain 99.9
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.33
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 99.08
PF0175337 zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin 98.76
KOG2589453 consensus Histone tail methylase [Chromatin struct 98.74
COG2940480 Proteins containing SET domain [General function p 97.87
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 97.68
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 97.64
KOG1710396 consensus MYND Zn-finger and ankyrin repeat protei 97.3
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 96.83
PF1382455 zf-Mss51: Zinc-finger of mitochondrial splicing su 96.34
KOG11411262 consensus Predicted histone methyl transferase [Ch 96.12
KOG1337472 consensus N-methyltransferase [General function pr 96.12
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 95.74
KOG1085392 consensus Predicted methyltransferase (contains a 95.6
PLN03158396 methionine aminopeptidase; Provisional 92.48
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 91.73
KOG1338466 consensus Uncharacterized conserved protein [Funct 90.58
KOG2857157 consensus Predicted MYND Zn-finger protein/hormone 90.03
PF0443830 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc 89.51
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 89.02
PF1057980 Rapsyn_N: Rapsyn N-terminal myristoylation and lin 85.08
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 83.88
KOG1081463 consensus Transcription factor NSD1 and related SE 82.93
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 80.91
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=99.90  E-value=1.2e-22  Score=207.33  Aligned_cols=341  Identities=24%  Similarity=0.359  Sum_probs=205.8

Q ss_pred             CCCCCCCEEEEeCCeeeeecCCCCCcccccccCcCCCCCCCCCCccccCCHHHHHHhhhhhHHHHHHhhhhhhhhcccCC
Q 016386            3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVT   82 (390)
Q Consensus         3 ~~I~~Ge~Il~e~P~~~~~~~~~~~~~C~~C~~~~~~~~C~~C~~~~yCS~~C~~~~~~~H~~EC~~l~~l~~~~~~~~~   82 (390)
                      .+|++|++|+.|.|++.+|..    ..|..|+.. ....|..|....+|+..++...|..|+++|.. .........   
T Consensus        32 ~~i~~g~~i~~e~p~~~~p~~----~~~~~c~~~-~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---  102 (482)
T KOG2084|consen   32 QAIEAGEVILEEEPLVVGPAS----KSCSRCLGC-SCDHCRRCLEAIECNKCQQRGWALCGKFACSA-DLAKLECEP---  102 (482)
T ss_pred             cccCCCceEEecCcceeeecc----cCCcccccc-chhhhhcCCccHhhhhhhccCccccchhhcch-hhccccccc---
Confidence            479999999999999999986    344455443 44567788888888754444444567777765 322111000   


Q ss_pred             HHHHHHHHHHH-HHHhcCCCCCCCCCCCchHH--HHHhhcccCCCChHH--HHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 016386           83 PSIRLMLKLYL-RRKLQNDNVIPSTTTDNYSL--VEALVAHMSDIDEKQ--LLLYAQIANLVNLILQWPEISINEIAENF  157 (390)
Q Consensus        83 ~~~~l~lR~l~-~~~~~~~~~~~~~~~~~~~~--v~~L~sh~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~ei~~~~  157 (390)
                      .........+. .......      ..+.+..  +..+....+......  ...+...+................+..++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (482)
T KOG2084|consen  103 LKLVGAPEECLALSSLHEE------SREAIVLLSLLEECSLSAEKPRLRLDLSYLEHGATEDDQSHLLLVLAADCISKLF  176 (482)
T ss_pred             hhhccchHHHHHhhcCCcc------ccchHHHHHHHHHhhhhcccccHhHHHhhHHHHhhHHhhccccchhHHHHHHHHH
Confidence            00000000000 0000000      0111111  111111111111100  00111111100000001111222334445


Q ss_pred             hHhhccccccccCCCC----CCcccccccccccCCCCCCCeEEEEeCCEEEEEEccccCCCC-eeeEeccCCCCCHHHHH
Q 016386          158 SKLACNAHTICNSELR----PLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGA-EVLISYIETAGSTMTRQ  232 (390)
Q Consensus       158 ~~l~~Naf~i~~~~~~----~~g~glyp~~S~~NHSC~PN~~~~f~~~~~~vrA~r~I~~Ge-ei~isY~~~~~~~~~Rr  232 (390)
                      ..+..+++.+.+....    ..|.|+||..+++||||.||+...|++....+++...+.+++ +++++|++..+++..||
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~hsC~pn~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~  256 (482)
T KOG2084|consen  177 PSLLCNSITNASSLRVPEPLFLGRGLFPGSSLFNHSCFPNISVIFDGRGLALLVPAGIDAGEEELTISYTDPLLSTASRQ  256 (482)
T ss_pred             HHHHHhhhhhhhhhhccccccceeeecccchhcccCCCCCeEEEECCceeEEEeecccCCCCCEEEEeecccccCHHHHH
Confidence            5555666655544333    489999999999999999999999999998888888888877 99999999999999999


Q ss_pred             HHHhccCCeEeeCcccCCCCCCCCccchhhhhccccCCCCCcceeeeCCC---CCccccCcCCCccCHHHHHHHHHHHHH
Q 016386          233 KALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSD---DKGFTCQQCGLVRSKEEIKKIASEVNI  309 (390)
Q Consensus       233 ~~L~~~~~F~C~C~rC~~~~~~~~~~~~~~l~~~~C~~~~C~g~~~~~~~---~~~~~C~~C~~~~~~~~v~~~~~~~~~  309 (390)
                      +.|+..|.|.|.|.||.+| ++    .+.++.+++|.+..|.+.+.+...   ...|.|..|.......++.........
T Consensus       257 ~~l~~~~~f~c~c~rc~d~-~~----~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  331 (482)
T KOG2084|consen  257 KQLRQSKLFSCQCPRCLDP-TE----LGTFLSSLRCENCTCGGLLGTSFLDKEDLQWPCTECALVRLKAYVVESREELQN  331 (482)
T ss_pred             HHHhhccceeeecCCCCCC-Cc----cccchhhhhhcCCCCCCccCCCcccccCCCccccccccchhHHHHHHHHHHHHh
Confidence            9999999999999999985 33    345667789988888766544333   358999999999887777766655443


Q ss_pred             HHHHHHhhhcCCCHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHHHHHhcchhccccce
Q 016386          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKGYIHSSILCLGCSII  372 (390)
Q Consensus       310 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~lhp~~~~~~~~~~~l~~~y~~~~~~~~~~~~~  372 (390)
                      .   ..  ...++    ....+.+...+....|+++.........+..++..+...-..|+.+
T Consensus       332 ~---~~--~~~~~----~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~  385 (482)
T KOG2084|consen  332 E---LL--DAFSD----LLIEELLLLRQESLELPNDFEVLLLKLHLLFILGSLLGAFLSCSPN  385 (482)
T ss_pred             h---cc--ccCCh----hhhHHHHHHHHHhhhCcchHHHHHHHHHHHHHHHHHHhhhhccchh
Confidence            2   00  01111    1222234456667789999988888888888777665544455543

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51 Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1337 consensus N-methyltransferase [General function prediction only] Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>PLN03158 methionine aminopeptidase; Provisional Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>KOG1338 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription] Back     alignment and domain information
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
3qwv_A433 Crystal Structure Of Histone Lysine Methyltransfera 1e-32
3s7b_A433 Structural Basis Of Substrate Methylation And Inhib 1e-30
3rib_A441 Human Lysine Methyltransferase Smyd2 In Complex Wit 9e-30
3tg4_A433 Structure Of Smyd2 In Complex With Sam Length = 433 1e-29
3oxg_A464 Human Lysine Methyltransferase Smyd3 In Complex Wit 8e-28
3qwp_A429 Crystal Structure Of Set And Mynd Domain Containing 8e-28
3pdn_A428 Crystal Structure Of Smyd3 In Complex With Methyltr 9e-28
3ru0_A438 Cocrystal Structure Of Human Smyd3 With Inhibitor S 9e-28
3oxf_A436 Human Lysine Methyltransferase Smyd3 In Complex Wit 9e-28
3mek_A429 Crystal Structure Of Human Histone-Lysine N- Methyl 4e-27
3n71_A490 Crystal Structure Of Cardiac Specific Histone Methy 5e-20
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase Smyd2 In Complex With The Cofactor Product Adohcy Length = 433 Back     alignment and structure 
Iteration: 1

 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 125/250 (50%), Gaps = 14/250 (5%)
Query: 4   FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
           FHV G+++ S   Y CV         C+ CFA    L KC  C+  +YC   CQK DW L
Sbjct: 27  FHV-GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL 85
Query: 63  HRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMS 122
           H+LEC  +  L +    S T  +            +       T ++    V    +H+ 
Sbjct: 86  HKLECSSMVVLGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVREFESHLD 139
Query: 123 DID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTG 178
            +D EK+ L+ + IA L       L++P+ S   +   F+++ CN  TI + EL  LG+ 
Sbjct: 140 KLDNEKKDLIQSDIAALHQFYSKYLEFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGSA 197
Query: 179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQ 238
           ++P ++++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++ 
Sbjct: 198 IFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDS 257
Query: 239 YLFTCTCPRC 248
           Y FTC C  C
Sbjct: 258 YFFTCECREC 267
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition Of Smyd2 Length = 433 Back     alignment and structure
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With Adohcy Length = 441 Back     alignment and structure
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam Length = 433 Back     alignment and structure
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form Iii) Length = 464 Back     alignment and structure
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3; Zinc Finger Mynd Domain-Containing Protein 1 Length = 429 Back     alignment and structure
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With Methyltransferase Inhibitor Sinefungin Length = 428 Back     alignment and structure
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin Bound Length = 438 Back     alignment and structure
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form I) Length = 436 Back     alignment and structure
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N- Methyltransferase Smyd3 In Complex With S-Adenosyl-L- Methionine Length = 429 Back     alignment and structure
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone Methyltransferase Smyd1 Length = 490 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
3qww_A433 SET and MYND domain-containing protein 2; methyltr 4e-67
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 1e-58
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 6e-56
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 6e-13
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 7e-13
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 2e-12
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 1e-11
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure
 Score =  217 bits (554), Expect = 4e-67
 Identities = 85/357 (23%), Positives = 158/357 (44%), Gaps = 37/357 (10%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y CV         C+ CFA    L KC  C+  +YC   CQK DW LH+LE
Sbjct: 30  GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLE 89

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +  L +      + ++RL  ++  ++K+  +     T ++    V    +H+  +D 
Sbjct: 90  CSSMVVLGENWNP--SETVRLTARILAKQKIHPER----TPSEKLLAVREFESHLDKLDN 143

Query: 126 EKQLLLYAQIANLVNLILQWPEI-SINEIAENFSKLACNAHTICNSELRPLGTGLYPVIS 184
           EK+ L+ + IA L     ++ E    + +   F+++ CN  TI + EL  LG+ ++P ++
Sbjct: 144 EKKDLIQSDIAALHQFYSKYLEFPDHSSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVA 203

Query: 185 IINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCT 244
           ++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++ Y FTC 
Sbjct: 204 LMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCE 263

Query: 245 CPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIA 304
           C  C                              +D D      ++       E I+ + 
Sbjct: 264 CREC----------------------------TTKDKDKAKVEVRKLSSPPQAEAIRDMV 295

Query: 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKGYIH 361
                + ++        +  E++   ++ ++    ++   +V ++    + +   ++
Sbjct: 296 RYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY 352
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Length = 60 Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Length = 70 Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 60 Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Length = 64 Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 52 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
3qww_A433 SET and MYND domain-containing protein 2; methyltr 100.0
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 100.0
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 100.0
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 99.55
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 99.45
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 99.28
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 99.26
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 99.13
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 99.0
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 98.95
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 98.93
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 98.83
3smt_A497 Histone-lysine N-methyltransferase SETD3; histone 98.81
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 98.78
3qxy_A449 N-lysine methyltransferase SETD6; epigenetics, pro 98.77
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 98.77
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 98.76
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 98.68
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 98.66
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 98.63
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 98.63
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 98.56
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 98.55
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 98.55
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 98.39
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 98.34
2h21_A440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 98.3
3db5_A151 PR domain zinc finger protein 4; methyltransferase 97.59
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 97.42
3dal_A196 PR domain zinc finger protein 1; methyltransferase 97.12
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 96.8
3ray_A237 PR domain-containing protein 11; structural genomi 96.47
2yqq_A56 Zinc finger HIT domain-containing protein 3; struc 94.0
1x4s_A59 Protein FON, zinc finger HIT domain containing pro 93.29
3qww_A433 SET and MYND domain-containing protein 2; methyltr 91.76
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 91.07
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 91.02
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
Probab=100.00  E-value=2.3e-56  Score=448.75  Aligned_cols=330  Identities=24%  Similarity=0.456  Sum_probs=270.0

Q ss_pred             CCCCCCCEEEEeCCeeeeecCCCCCcccccccCc-CCCCCCCCCCccccCCHHHHHHhhhhhHHHHHHhhhhhhhhcccC
Q 016386            3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFAS-SNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSV   81 (390)
Q Consensus         3 ~~I~~Ge~Il~e~P~~~~~~~~~~~~~C~~C~~~-~~~~~C~~C~~~~yCS~~C~~~~~~~H~~EC~~l~~l~~~~~~~~   81 (390)
                      ++|++||+|+.|+|+++++.......+|.+|+++ ..+.+|++|++++|||++||+++|++|+.||+.++.+....  .+
T Consensus        25 r~i~~Ge~Il~e~P~a~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~l~~~~~~~--~p  102 (433)
T 3qww_A           25 RPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLECSSMVVLGENW--NP  102 (433)
T ss_dssp             SCBCTTCEEEEEECSEEEECGGGTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHHHHTTTHHHHHHSSTTC--CC
T ss_pred             CCCCCCCEEEecCCceEEecccccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhhHHHHHHHHHHHhCccC--CC
Confidence            6899999999999999999877889999999998 46899999999999999999999999999999998875322  24


Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCCCCCCCchHHHHHhhcccCCCChHHHHHHHHHHHHHHHHhCC--CCCCHHHHHHHHhH
Q 016386           82 TPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQW--PEISINEIAENFSK  159 (390)
Q Consensus        82 ~~~~~l~lR~l~~~~~~~~~~~~~~~~~~~~~v~~L~sh~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~ei~~~~~~  159 (390)
                      +..+++++|+++++..+.+.    ...+.+..+..|++|.+++.+++...+......+..+++.  ...+.++|..++++
T Consensus       103 ~~~~rl~~Ril~~~~~~~~~----~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~  178 (433)
T 3qww_A          103 SETVRLTARILAKQKIHPER----TPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKYLEFPDHSSLVVLFAQ  178 (433)
T ss_dssp             CHHHHHHHHHHHHHHHCCSC----CGGGSSCCGGGCCCCGGGCCHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhcccc----CchhhhhhHHHHHhhhhccChHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence            56789999999876554321    1123455678899999998876543333222233334432  24578999999999


Q ss_pred             hhccccccccCCCCCCcccccccccccCCCCCCCeEEEEeCCEEEEEEccccCCCCeeeEeccCCCCCHHHHHHHHhccC
Q 016386          160 LACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQY  239 (390)
Q Consensus       160 l~~Naf~i~~~~~~~~g~glyp~~S~~NHSC~PN~~~~f~~~~~~vrA~r~I~~Geei~isY~~~~~~~~~Rr~~L~~~~  239 (390)
                      +.+|+|+|.+.+...+|.||||.+|+|||||+||+.+.|+|++++|+|+|||++||||||||++..+++.+||+.|+++|
T Consensus       179 ~~~N~f~i~~~~~~~~g~gl~p~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~Geel~i~Y~~~~~~~~~R~~~L~~~~  258 (433)
T 3qww_A          179 VNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSY  258 (433)
T ss_dssp             HHHHCEEEECTTCCEEEEEECTTGGGSEECSSCSEEEEEETTEEEEEESSCBCTTCEEEECCSCTTSCHHHHHHHHHHHH
T ss_pred             HcCCceecccCCccceeEEecccccccCCCCCCCceEEEcCCEEEEEeccCcCCCCEEEEeecCCcCCHHHHHHHHhCcC
Confidence            99999999988877889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEeeCcccCCCCCCCCccchhhhhccccCCCCCcceeeeCCCCCccccCcCCCccCHHHHHHHHHHHHHHHHHHHhhhc
Q 016386          240 LFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTS  319 (390)
Q Consensus       240 ~F~C~C~rC~~~~~~~~~~~~~~l~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~~~v~~~~~~~~~~~~~~~~~~~  319 (390)
                      +|+|.|.||.++ ++     |..+.++++    |                  +.....+++..+.......+++..+...
T Consensus       259 ~F~C~C~~C~~~-~~-----d~~~~~~~~----~------------------~~~~~~e~v~~~~~~~~~~le~~~~~~~  310 (433)
T 3qww_A          259 FFTCECRECTTK-DK-----DKAKVEVRK----L------------------SSPPQAEAIRDMVRYARNVIEEFRRAKH  310 (433)
T ss_dssp             SCCCCSHHHHHC-TT-----HHHHTCBCC----C------------------SSCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CEEeECCCCCCC-Cc-----chhhhhhhh----c------------------CCCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999996 21     222222221    1                  1112345666666666667776666556


Q ss_pred             CCCHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHHHHHhcchh
Q 016386          320 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKGYIHSSILC  366 (390)
Q Consensus       320 ~~~~~~a~~~~~~~~~~~~~~lhp~~~~~~~~~~~l~~~y~~~~~~~  366 (390)
                      .|+|++|+++|++++..+..+++|+|+.++.+.+.|+.+|..+|++.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~  357 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWE  357 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHH
Confidence            78999999999999999999999999999999999999999999985
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 390
d2dana147 g.85.1.1 (A:8-54) Zinc finger MYND domain-containi 2e-10
d2dj8a147 g.85.1.1 (A:8-54) Zinc finger MYND domain-containi 8e-10
d2jw6a138 g.85.1.1 (A:503-540) Zinc finger MYND domain-conta 9e-10
d2h2ja2261 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain 3e-08
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 9e-05
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 2e-10
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 29 RCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
          RC  C A +  K+CS CQ  WYC   CQ   W+ H   C
Sbjct: 10 RCAYCSAEA-SKRCSRCQNEWYCCRECQVKHWEKHGKTC 47
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261 Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 99.37
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 99.05
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 98.82
d2jw6a138 Zinc finger MYND domain-containing protein 2, MTG8 98.72
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 98.68
d2dana147 Zinc finger MYND domain-containing protein 10, ZMY 98.63
d2dj8a147 Zinc finger MYND domain-containing protein 2, MTG8 98.61
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 98.41
d1x4sa146 Zinc finger HIT domain containing protein 2, ZNHIT 85.87
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 80.64
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 80.23
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.37  E-value=1.1e-13  Score=126.52  Aligned_cols=88  Identities=22%  Similarity=0.203  Sum_probs=69.5

Q ss_pred             CCCHHHHHHHHhHhhccccccccCCCCCCcccccccccccCCCCCCCeEEEEeC-----------CEEEEEEccccCCCC
Q 016386          147 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEG-----------RLAVVRAVQHVPKGA  215 (390)
Q Consensus       147 ~~~~~ei~~~~~~l~~Naf~i~~~~~~~~g~glyp~~S~~NHSC~PN~~~~f~~-----------~~~~vrA~r~I~~Ge  215 (390)
                      .++.+.+..++..+.+++|.+.    ...|.+|||.++|+||||.||+.+.+++           +.+++||+|+|++||
T Consensus       157 ~~~~~~~~~a~~~v~sr~~~~~----~~~~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~GE  232 (261)
T d2h2ja2         157 PVTLDDFFWAFGILRSRAFSRL----RNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGE  232 (261)
T ss_dssp             CCCHHHHHHHHHHHHHHSBCCC-------CCBCCTTGGGCEECSSCCSCCCCCC-----------CEEEEECSSCCCTTS
T ss_pred             ccCHHHHHHHHHHhhccccccc----ccccccchhhhHHhhcCCCCCcccccccccCcccccCCCcEEEEEECCCCCCCC
Confidence            4677788888888888888653    2568899999999999999999887753           468999999999999


Q ss_pred             eeeEeccCCCCCHHHHHHHHhccCCeEe
Q 016386          216 EVLISYIETAGSTMTRQKALKEQYLFTC  243 (390)
Q Consensus       216 ei~isY~~~~~~~~~Rr~~L~~~~~F~C  243 (390)
                      ||||||++.. +.    ..|...|+|.+
T Consensus       233 EI~isYG~~~-~n----~~ll~~yGFv~  255 (261)
T d2h2ja2         233 QVYIQYDLNK-SN----AELALDYGFIE  255 (261)
T ss_dssp             BCEECSCSSC-CH----HHHHHHSSCCC
T ss_pred             EEEEecCCCC-CH----HHHHHhCCCCC
Confidence            9999998643 32    23555899973
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure