Citrus Sinensis ID: 016413

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
Protein Sequence
MARFDHHNKHTYTKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYRPPK
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEEEEEEccEEEEEEEccEEEEEcccccccccEEEEEcccEEEEccccEEcccccccccccccEEEEEEEccccccccccEEEEEEccccccccEEccccccccccccEEEEccEEEEEEccccccccccEEEEEEcccccEEccccccccccccEEEEEEEccEEEEEccccccccccccccEEEEEcccccEEEcccccccccccEEEEEccEEEEEcccccccccccEEEEEcEEEccccccccEEEcccccccccccEEEEEccEEEEEccccccccccccccccccccccEEEEEEEEEccccccEEEcccccccccccEEEEEEEccEEEEEcccccccccccEEEEEEEEEEcccccEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHEEEEHHHHHHHHHHHHHHHHHHccccccccHHcHccccccccccccccEEEcccccccEEcccEEEEccccccccccccHHHHHcccccccccccccccccccccccEEEEEccEEEEEEccccccccccEEEEEcccccccccccccccccccccEEEEEcccEEEEEEccccccccccccEEEEEccccccccccccccccccccEEEEEccEEEEEEccccccccccEEEEEEEEcccccccccccccccccccccccEEEEEccEEEEEEcccccccccccccEEEEccccccEcccEEEcccccccEEcccccccccccEEEEEEEccEEEEEEcccccccccEEEEEEEEEEEEEcccEEEEEEccccc
Coil and Loop (DISEMBL)
marfdhhnkhtytktgCWFLCVLGLLGAALIADFmwasssssfssssahLSVASNWALEKSGVvviphvnatkidrqrESVAVIDKKGQDAERFLSAtfadlpapdleweqmpsapvprldgaAIQIKNLFYVFAGygsldyvhshvdvynftdnkwvdrfdmpkdmahshlgvvsDGRYIYIVsgqygpqcrgptsrtfvldsetrkwdsipplpspryspatqlwrgrlhvmggskenrhtpglehwsiAVKDGKALEKAWrteipiprggphracfvfndrlfvvggqegdfmakpgspifkcsrrhevvygdvymlddemkwkvlppmpkpnshieCAWVIVNNSIiitggttekhpmtkRMILVGEVFQFHLDSLVIIYHYRPPK
Flexible Loop (DISEMBL)
marfdhhnkhtytktgCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHvnatkidrqresvAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGqygpqcrgptSRTFVLDsetrkwdsipplpspryspATQLWRGRLHVMGGSkenrhtpglehwsiAVKDGKALEKAWRTeipiprggphRACFVFNDRLFVVGGQEGDFMAkpgspifkcsrrhEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIiyhyrppk
Low Complexity Region (SEG)
MARFDHHNKHTYTKTGCWFLCVLGLLGAALIADFMWasssssfssssahlsvasNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYRPPK
Disordered region (IsUnstruct)
*********HTYTKTGCWFLCVLGLLGAALIADFMWA************LSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDK*****ERFLSATFADLPAPDLEWE*****PVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD********************TQLWRGRLHVM*********PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHY****
Disordered Region (DISOPRED)
********KHTYTKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSG**************QRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYR***
Disordered Region (DISEMBL)
MARFDHHNKHTYTKTGCWFLCVLGLLGAALIADFMWAS*************VASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYRPPK
Disordered Region (DISPRO)
************TKTGCWFLCVLGLLGAALIADFMWASSSSSFSS*SAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYRP**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARFDHHNKHTYTKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYRPPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	390	2.2.26 [Sep-21-2011]
Q9LK31	426	Kelch repeat-containing p	no	no	0.9	0.823	0.653	1e-138
Q6DFF6	604	Kelch-like protein 20 OS=	N/A	no	0.443	0.286	0.254	7e-10
Q5ZKD9	610	Kelch-like protein 20 OS=	yes	no	0.443	0.283	0.254	8e-10
Q8VCK5	604	Kelch-like protein 20 OS=	yes	no	0.443	0.286	0.248	2e-09
Q5R7B8	609	Kelch-like protein 20 OS=	yes	no	0.443	0.284	0.248	2e-09
D3Z8N4	609	Kelch-like protein 20 OS=	yes	no	0.443	0.284	0.248	2e-09
Q9Y2M5	609	Kelch-like protein 20 OS=	yes	no	0.443	0.284	0.248	2e-09
Q08DK3	609	Kelch-like protein 20 OS=	yes	no	0.443	0.284	0.248	2e-09
Q91XA8	350	Kelch domain-containing p	no	no	0.607	0.677	0.211	4e-09
B4LIG6	624	Kelch-like protein diablo	N/A	no	0.443	0.277	0.232	8e-09

>sp|Q9LK31|Y3272_ARATH Kelch repeat-containing protein At3g27220 OS=Arabidopsis thaliana GN=At3g27220 PE=1 SV=1

 Score =  490 bits (1261), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 236/361 (65%), Positives = 285/361 (78%), Gaps = 10/361 (2%)

Query: 20  LCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRE 79
           L    +LG   IA F+    SSS  S SA  S+   W       + IP +++  +  Q+ 
Sbjct: 22  LYFTSVLGIGFIAAFL--CLSSSIPSVSAVFSI---WVPVNRPEIQIPIIDSKIV--QKR 74

Query: 80  SVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGS 139
           S    D K  D  RFLSA FAD+PAP+L+WE+M SAPVPRLDG ++QI NL YVF+GYGS
Sbjct: 75  SKQSNDTK--DHVRFLSAIFADIPAPELKWEEMESAPVPRLDGYSVQINNLLYVFSGYGS 132

Query: 140 LDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRT 199
           LDYVHSHVDV+NFTDNKW DRF  PK+MA+SHLG+V+DGRY+Y+VSGQ GPQCRGPTSR+
Sbjct: 133 LDYVHSHVDVFNFTDNKWCDRFHTPKEMANSHLGIVTDGRYVYVVSGQLGPQCRGPTSRS 192

Query: 200 FVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKAL 259
           FVLDS T+ W   P LP+PRY+PATQ+WRGRLHVMGGSKENR+    +HWSIAVKDGKAL
Sbjct: 193 FVLDSFTKTWLEFPSLPAPRYAPATQIWRGRLHVMGGSKENRNAVAFDHWSIAVKDGKAL 252

Query: 260 EKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYM 319
           ++ WR E+PIPRGGPHRAC V ND+L V+GGQEGDFMAKP SPIFKCSRR E+  G+VYM
Sbjct: 253 DE-WREEVPIPRGGPHRACVVANDKLLVIGGQEGDFMAKPNSPIFKCSRRREIFNGEVYM 311

Query: 320 LDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDS 379
           +D+EMKWK+LPPMPK NSHIE AW+IVNNSI+I GGTT+ HP+TKR++LVGE+F+F LD+
Sbjct: 312 MDEEMKWKMLPPMPKNNSHIESAWIIVNNSIVIVGGTTDWHPVTKRLVLVGEIFRFQLDT 371

Query: 380 L 380
           L
Sbjct: 372 L 372

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DFF6|KLH20_XENLA Kelch-like protein 20 OS=Xenopus laevis GN=klhl20 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 75/185 (40%), Gaps = 12/185 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
           EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct: 339 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 396

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
             + +GV   G Y+Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct: 397 CRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 453

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
            G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct: 454 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 506

Query: 288 VGGQE 292
           VGG++
Sbjct: 507 VGGRD 511

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of target proteins, leading to their degradation by the proteasome.

Xenopus laevis (taxid: 8355)

>sp|Q5ZKD9|KLH20_CHICK Kelch-like protein 20 OS=Gallus gallus GN=KLHL20 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 75/185 (40%), Gaps = 12/185 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
           EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct: 345 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 402

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
             + +GV   G Y+Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct: 403 CRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 459

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
            G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct: 460 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 512

Query: 288 VGGQE 292
           VGG++
Sbjct: 513 VGGRD 517

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of target proteins, leading to their degradation by the proteasome.

Gallus gallus (taxid: 9031)

>sp|Q8VCK5|KLH20_MOUSE Kelch-like protein 20 OS=Mus musculus GN=Klhl20 PE=2 SV=2

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 12/185 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
           EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct: 339 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 396

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
             + +GV   G ++Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct: 397 CRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 453

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
            G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct: 454 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 506

Query: 288 VGGQE 292
           VGG++
Sbjct: 507 VGGRD 511

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis. Also acts as a regulator of endothelial migration during angiogenesis by controlling the activation of Rho GTPases.

Mus musculus (taxid: 10090)

>sp|Q5R7B8|KLH20_PONAB Kelch-like protein 20 OS=Pongo abelii GN=KLHL20 PE=2 SV=3

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 12/185 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
           EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct: 344 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 401

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
             + +GV   G ++Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct: 402 CRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 458

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
            G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct: 459 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 511

Query: 288 VGGQE 292
           VGG++
Sbjct: 512 VGGRD 516

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis. Also acts as a regulator of endothelial migration during angiogenesis by controlling the activation of Rho GTPases.

Pongo abelii (taxid: 9601)

>sp|D3Z8N4|KLH20_RAT Kelch-like protein 20 OS=Rattus norvegicus GN=Klhl20 PE=3 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 12/185 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
           EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct: 344 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 401

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
             + +GV   G ++Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct: 402 CRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 458

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
            G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct: 459 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 511

Query: 288 VGGQE 292
           VGG++
Sbjct: 512 VGGRD 516

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y2M5|KLH20_HUMAN Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE=1 SV=4

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 12/185 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
           EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct: 344 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 401

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
             + +GV   G ++Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct: 402 CRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 458

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
            G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct: 459 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 511

Query: 288 VGGQE 292
           VGG++
Sbjct: 512 VGGRD 516

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis. Also acts as a regulator of endothelial migration during angiogenesis by controlling the activation of Rho GTPases.

Homo sapiens (taxid: 9606)

>sp|Q08DK3|KLH20_BOVIN Kelch-like protein 20 OS=Bos taurus GN=KLHL20 PE=2 SV=3

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 12/185 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
           EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct: 344 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 401

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
             + +GV   G ++Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct: 402 CRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 458

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
            G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct: 459 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 511

Query: 288 VGGQE 292
           VGG++
Sbjct: 512 VGGRD 516

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis. Also acts as a regulator of endothelial migration during angiogenesis by controlling the activation of Rho GTPases.

Bos taurus (taxid: 9913)

>sp|Q91XA8|KLD8A_MOUSE Kelch domain-containing protein 8A OS=Mus musculus GN=Klhdc8a PE=2 SV=1

 Score = 63.2 bits (152), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 111/293 (37%), Gaps = 56/293 (19%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
           +W  +PS P  R   A   +     V  G G+       V++YN  + KW  R      +
Sbjct: 58  QWTSLPSLPTARAGVAITALGKRIMVIGGVGTNQLPVKVVEMYNIDEGKWKKR----SVL 113

Query: 168 AHSHLGV-VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQL 226
             + +G+ V+   Y    +G  G   R P +     D     W S+ P+P+PRY+  + L
Sbjct: 114 REAAMGISVTAKDYRVYAAGGMGLDLR-PHNYLQHYDMLKDMWVSLAPMPTPRYAATSFL 172

Query: 227 WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLF 286
              +++V+GG +        E + I         ++W     IP      +    ++ L+
Sbjct: 173 RGSKIYVLGGRQSKYAVNAFEVFDIE-------SRSWTKFPNIPCKRAFSSFVTLDNHLY 225

Query: 287 VVGG-QEGDFMAKPG-------------------SPIFKCSRRHEVVYGDV--------- 317
            +GG ++G    +P                       F   RR + V G +         
Sbjct: 226 SLGGLRQGRLYRQPKFLRTMDVFDMEQGGWLKMERSFFLKKRRADFVAGGLSGRVIVAGG 285

Query: 318 -----YMLD-------DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTE 358
                 +L+       ++ KW+ LPPMP P     C+ ++  N ++  GG ++
Sbjct: 286 LGNQPTVLETAEAFHPEKNKWEALPPMPTP--RCACSSIVFKNCLLAVGGVSQ 336

Mus musculus (taxid: 10090)

>sp|B4LIG6|KLHDB_DROVI Kelch-like protein diablo OS=Drosophila virilis GN=dbo PE=3 SV=1

 Score = 62.0 bits (149), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 12/185 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
           +W+ +      R       + +L Y   G+    Y++S ++ Y+   N+W      P   
Sbjct: 349 DWKMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNS-IERYDPQTNQWSCDV-APTTS 406

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
             + +GV     ++Y V GQ G QC     R    D +  KW  + P+ + R   A  + 
Sbjct: 407 CRTSVGVAVLDGFLYAVGGQDGVQCLNHVER---YDPKENKWSKVAPMTTRRLGVAVAVL 463

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
            G L+ +GGS        +E +          +  W    P+     H  C VFN+ ++ 
Sbjct: 464 SGHLYAIGGSDGQCPLNTVERYD-------PRQNKWVAVNPMSTRRKHLGCAVFNNYIYA 516

Query: 288 VGGQE 292
           VGG++
Sbjct: 517 VGGRD 521

Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May have a role in synapse differentiation and growth.

Drosophila virilis (taxid: 7244)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
225452169	423	PREDICTED: kelch repeat-containing prote	0.928	0.855	0.750	1e-165
296090252	431	unnamed protein product [Vitis vinifera]	0.928	0.839	0.750	1e-165
255536987	430	conserved hypothetical protein [Ricinus	0.964	0.874	0.738	1e-159
449449581	418	PREDICTED: kelch repeat-containing prote	0.928	0.866	0.705	1e-159
449479719	418	PREDICTED: LOW QUALITY PROTEIN: kelch re	0.928	0.866	0.702	1e-158
225443351	426	PREDICTED: kelch repeat-containing prote	0.925	0.847	0.727	1e-156
255561818	425	conserved hypothetical protein [Ricinus	0.889	0.816	0.719	1e-150
363814328	436	uncharacterized protein LOC100777575 [Gl	0.951	0.850	0.667	1e-150
356560517	434	PREDICTED: kelch repeat-containing prote	0.905	0.813	0.684	1e-150
224113255	424	predicted protein [Populus trichocarpa]	0.905	0.832	0.701	1e-148

>gi|225452169|ref|XP_002270625.1| PREDICTED: kelch repeat-containing protein At3g27220 [Vitis vinifera]

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 280/373 (75%), Positives = 317/373 (84%), Gaps = 11/373 (2%)

Query: 9   KHTYTKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPH 68
           KH  +K        +G LGA L+AD++WAS+S       A+LS+ASNWAL KS  VVIP 
Sbjct: 7   KHYTSKKLVLLASFVGFLGAILVADYLWASASF------AYLSIASNWALTKSSTVVIP- 59

Query: 69  VNATKIDRQ-RESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQI 127
              T  D + ++ V V DKK + + R LSATFADLPAP+L+WE+M  APVPRLDGA+IQI
Sbjct: 60  ---TNFDEKLQQRVDVKDKKNRTSGRILSATFADLPAPELKWEEMQPAPVPRLDGASIQI 116

Query: 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQ 187
           KNL YVFAGYG+L+YVHSHVD+YN TDN W  RFDMPK+MAHSHLG+ +DGRYIYIVSGQ
Sbjct: 117 KNLLYVFAGYGTLNYVHSHVDIYNITDNAWGGRFDMPKEMAHSHLGMATDGRYIYIVSGQ 176

Query: 188 YGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLE 247
           YGPQCRGPT+R FVLD+ET+KW  +P LP+PRY+PATQLWRGRLHVMGG KENRHTPGLE
Sbjct: 177 YGPQCRGPTARCFVLDTETKKWQDLPTLPAPRYAPATQLWRGRLHVMGGGKENRHTPGLE 236

Query: 248 HWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCS 307
           HWS+AVK+GKALEK WR+EIPIPRGGPHRAC V +DRLFV+GGQEGDFMAKPGSPIFKCS
Sbjct: 237 HWSLAVKNGKALEKEWRSEIPIPRGGPHRACVVVDDRLFVIGGQEGDFMAKPGSPIFKCS 296

Query: 308 RRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMI 367
           RRHEVVY DVYMLDDEMKWKVLPPMPKP+SHIE AWV+VNNSIII GGTTEKHP+TKRMI
Sbjct: 297 RRHEVVYEDVYMLDDEMKWKVLPPMPKPDSHIEFAWVVVNNSIIIVGGTTEKHPVTKRMI 356

Query: 368 LVGEVFQFHLDSL 380
           LVGEVFQFHLDSL
Sbjct: 357 LVGEVFQFHLDSL 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090252|emb|CBI40071.3| unnamed protein product [Vitis vinifera]

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 280/373 (75%), Positives = 317/373 (84%), Gaps = 11/373 (2%)

Query: 9   KHTYTKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPH 68
           KH  +K        +G LGA L+AD++WAS+S       A+LS+ASNWAL KS  VVIP 
Sbjct: 7   KHYTSKKLVLLASFVGFLGAILVADYLWASASF------AYLSIASNWALTKSSTVVIP- 59

Query: 69  VNATKIDRQ-RESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQI 127
              T  D + ++ V V DKK + + R LSATFADLPAP+L+WE+M  APVPRLDGA+IQI
Sbjct: 60  ---TNFDEKLQQRVDVKDKKNRTSGRILSATFADLPAPELKWEEMQPAPVPRLDGASIQI 116

Query: 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQ 187
           KNL YVFAGYG+L+YVHSHVD+YN TDN W  RFDMPK+MAHSHLG+ +DGRYIYIVSGQ
Sbjct: 117 KNLLYVFAGYGTLNYVHSHVDIYNITDNAWGGRFDMPKEMAHSHLGMATDGRYIYIVSGQ 176

Query: 188 YGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLE 247
           YGPQCRGPT+R FVLD+ET+KW  +P LP+PRY+PATQLWRGRLHVMGG KENRHTPGLE
Sbjct: 177 YGPQCRGPTARCFVLDTETKKWQDLPTLPAPRYAPATQLWRGRLHVMGGGKENRHTPGLE 236

Query: 248 HWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCS 307
           HWS+AVK+GKALEK WR+EIPIPRGGPHRAC V +DRLFV+GGQEGDFMAKPGSPIFKCS
Sbjct: 237 HWSLAVKNGKALEKEWRSEIPIPRGGPHRACVVVDDRLFVIGGQEGDFMAKPGSPIFKCS 296

Query: 308 RRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMI 367
           RRHEVVY DVYMLDDEMKWKVLPPMPKP+SHIE AWV+VNNSIII GGTTEKHP+TKRMI
Sbjct: 297 RRHEVVYEDVYMLDDEMKWKVLPPMPKPDSHIEFAWVVVNNSIIIVGGTTEKHPVTKRMI 356

Query: 368 LVGEVFQFHLDSL 380
           LVGEVFQFHLDSL
Sbjct: 357 LVGEVFQFHLDSL 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536987|ref|XP_002509560.1| conserved hypothetical protein [Ricinus communis] gi|223549459|gb|EEF50947.1| conserved hypothetical protein [Ricinus communis]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 282/382 (73%), Positives = 319/382 (83%), Gaps = 6/382 (1%)

Query: 1   MARFDHHNKHTYTKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEK 60
           MAR  H N   ++K   + L  +GLLGA  I D +W +SSSS S SSA+ S+ASNW L  
Sbjct: 1   MARLGHTNH--FSKKSVFLLSCVGLLGALFIVDVLW-TSSSSLSISSAYQSIASNWVLVN 57

Query: 61  SGV-VVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPR 119
            G   V+P+++A+K D ++E++    K    AER LSATFADLPAP+LEWEQMPSAPVPR
Sbjct: 58  PGNNAVLPNISASK-DHEKEALKG-RKDSVGAERLLSATFADLPAPELEWEQMPSAPVPR 115

Query: 120 LDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGR 179
           LDG ++QI NL YVF GYG++++VHSHVDVYNFTDN W ++FD PKDMAHSHLGV +DGR
Sbjct: 116 LDGYSVQINNLLYVFVGYGNINHVHSHVDVYNFTDNTWGEKFDTPKDMAHSHLGVATDGR 175

Query: 180 YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKE 239
           YIYIVSGQYGPQCR   S TF LD+ET+ W  +P LP+PRY+PATQLWRGRLHVMGGSKE
Sbjct: 176 YIYIVSGQYGPQCRTAISLTFSLDTETKIWRRMPSLPAPRYAPATQLWRGRLHVMGGSKE 235

Query: 240 NRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKP 299
           NRHTPG++HWSIAVKDGKALEK WRTEIPIPRGGPHRAC V NDRLFV+GGQEGDFM KP
Sbjct: 236 NRHTPGVDHWSIAVKDGKALEKEWRTEIPIPRGGPHRACIVVNDRLFVIGGQEGDFMPKP 295

Query: 300 GSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEK 359
           GSPIFKCSRR+EVVYGDVYMLD EMKWK LP MPKPNSHIECAWVIVNNSIIITGGTTEK
Sbjct: 296 GSPIFKCSRRNEVVYGDVYMLDYEMKWKALPAMPKPNSHIECAWVIVNNSIIITGGTTEK 355

Query: 360 HPMTKRMILVGEVFQFHLDSLV 381
           HP+TKRMILVGEVFQFHLDSL 
Sbjct: 356 HPVTKRMILVGEVFQFHLDSLT 377

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449581|ref|XP_004142543.1| PREDICTED: kelch repeat-containing protein At3g27220-like [Cucumis sativus]

 Score =  567 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 266/377 (70%), Positives = 315/377 (83%), Gaps = 15/377 (3%)

Query: 5   DHHNKHTYTKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVV 64
           +H    + T T  + +   GLLGAALIAD +W SSSS   +S+        WA+ ++ + 
Sbjct: 4   NHLKNASSTNTLLFLITCAGLLGAALIADLLWTSSSSFSIAST--------WAIGRTKLY 55

Query: 65  VIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAA 124
           VIPH +         +   +D K  D+ +FL+ TF DLPAPDLEWE++PSAPVPRLDGA+
Sbjct: 56  VIPHSST-------NNATQVDDKETDSRKFLTGTFFDLPAPDLEWEEIPSAPVPRLDGAS 108

Query: 125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIV 184
           IQI N+FYVFAGYG+++YVH+HVD++NF+DNKW+ +FDMPK+MAHSHLG+  DGRY+Y+V
Sbjct: 109 IQINNIFYVFAGYGNINYVHTHVDMFNFSDNKWIGKFDMPKEMAHSHLGMACDGRYVYVV 168

Query: 185 SGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTP 244
           SGQYGPQCRGPT+RTFVLD+ET+KW+S+PPLP+PRY+PATQLWRGRLHVMGGSKENRHTP
Sbjct: 169 SGQYGPQCRGPTARTFVLDTETKKWNSMPPLPAPRYAPATQLWRGRLHVMGGSKENRHTP 228

Query: 245 GLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIF 304
           GLEHWSIAVKDGK LEK WRTE+PIPRGGPHRAC V +DRLFV+GGQEGDFMAKPGSPIF
Sbjct: 229 GLEHWSIAVKDGKVLEKKWRTEVPIPRGGPHRACIVVDDRLFVIGGQEGDFMAKPGSPIF 288

Query: 305 KCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTK 364
           KCSRRHEVVYGDVYMLD+E KWK L PMPKP+SHIE AWV+VNNSIIITGGTTEKHP+TK
Sbjct: 289 KCSRRHEVVYGDVYMLDNEKKWKTLSPMPKPDSHIEFAWVVVNNSIIITGGTTEKHPITK 348

Query: 365 RMILVGEVFQFHLDSLV 381
           RMILVGEVF+F LDS  
Sbjct: 349 RMILVGEVFRFDLDSFT 365

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479719|ref|XP_004155687.1| PREDICTED: LOW QUALITY PROTEIN: kelch repeat-containing protein At3g27220-like [Cucumis sativus]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 265/377 (70%), Positives = 314/377 (83%), Gaps = 15/377 (3%)

Query: 5   DHHNKHTYTKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVV 64
           +H    + T T  + +   GLLGAALIAD +W SSSS   +S+        WA+ ++ + 
Sbjct: 4   NHLKNASSTNTLLFLITCAGLLGAALIADLLWTSSSSFSIAST--------WAIGRTKLY 55

Query: 65  VIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAA 124
           VIPH +         +   +D K  D+ +FL+ TF DLPAPDLEWE++PSAPVPRLDGA+
Sbjct: 56  VIPHSST-------NNATQVDDKETDSRKFLTGTFFDLPAPDLEWEEIPSAPVPRLDGAS 108

Query: 125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIV 184
           IQI N+FYVFAGYG+++YVH+HVD++NF+DNKW+ +FDMPK+MAHSHLG+  DGRY+Y+V
Sbjct: 109 IQINNIFYVFAGYGNINYVHTHVDMFNFSDNKWIGKFDMPKEMAHSHLGMACDGRYVYVV 168

Query: 185 SGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTP 244
           SGQYGPQCRGPT+RTFVLD+ET+KW+S+ PLP+PRY+PATQLWRGRLHVMGGSKENRHTP
Sbjct: 169 SGQYGPQCRGPTARTFVLDTETKKWNSMXPLPAPRYAPATQLWRGRLHVMGGSKENRHTP 228

Query: 245 GLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIF 304
           GLEHWSIAVKDGK LEK WRTE+PIPRGGPHRAC V +DRLFV+GGQEGDFMAKPGSPIF
Sbjct: 229 GLEHWSIAVKDGKVLEKKWRTEVPIPRGGPHRACIVVDDRLFVIGGQEGDFMAKPGSPIF 288

Query: 305 KCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTK 364
           KCSRRHEVVYGDVYMLD+E KWK L PMPKP+SHIE AWV+VNNSIIITGGTTEKHP+TK
Sbjct: 289 KCSRRHEVVYGDVYMLDNEKKWKTLSPMPKPDSHIEFAWVVVNNSIIITGGTTEKHPITK 348

Query: 365 RMILVGEVFQFHLDSLV 381
           RMILVGEVF+F LDS  
Sbjct: 349 RMILVGEVFRFDLDSFT 365

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443351|ref|XP_002265018.1| PREDICTED: kelch repeat-containing protein At3g27220 [Vitis vinifera] gi|297735771|emb|CBI18458.3| unnamed protein product [Vitis vinifera]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 269/370 (72%), Positives = 313/370 (84%), Gaps = 9/370 (2%)

Query: 13  TKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKS-GVVVIPHVNA 71
           ++T  + +   GLL A L+AD +WASS SS    S + S+A+NWA + S   V++PH   
Sbjct: 10  SRTFVFVISCFGLLAAGLVADLLWASSKSS----SGYHSIATNWAFDDSRSTVIVPHQQP 65

Query: 72  TKIDRQRESVAVIDKKGQDA-ERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNL 130
            K    +E   V DKK  D  ER LSATFADLPAP+LEWE+M  APVPRLDGAAIQIKNL
Sbjct: 66  QK---AKEGSDVKDKKKADVPERVLSATFADLPAPELEWEKMAPAPVPRLDGAAIQIKNL 122

Query: 131 FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGP 190
            YVFAGYG++D+VHSHVDVYNFTDN W  RFDMPK+MAHSHLG+V+DGRYIY+V+GQYGP
Sbjct: 123 LYVFAGYGTIDFVHSHVDVYNFTDNTWGGRFDMPKEMAHSHLGMVTDGRYIYVVTGQYGP 182

Query: 191 QCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWS 250
           QCRGPT+RTFVLD++T++W  +PPLP PRY+PATQLWRGRLHVMGGS ENRHTP LEHWS
Sbjct: 183 QCRGPTARTFVLDTKTKQWSDMPPLPVPRYAPATQLWRGRLHVMGGSGENRHTPALEHWS 242

Query: 251 IAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRH 310
           +AVK+GKALEK WR+EIPIPRGGPHRAC V +DRL V+GGQEGDFMAKPGSPIFKCSRR+
Sbjct: 243 LAVKNGKALEKEWRSEIPIPRGGPHRACIVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRN 302

Query: 311 EVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVG 370
           EVV+ DVYMLDDEMKWK LPPMPKP+SHIE AWV+VN+SIII GGTTEKHP+TK+M+LVG
Sbjct: 303 EVVFSDVYMLDDEMKWKNLPPMPKPDSHIEFAWVMVNHSIIIVGGTTEKHPITKKMVLVG 362

Query: 371 EVFQFHLDSL 380
           EVFQF+LDSL
Sbjct: 363 EVFQFNLDSL 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561818|ref|XP_002521918.1| conserved hypothetical protein [Ricinus communis] gi|223538843|gb|EEF40442.1| conserved hypothetical protein [Ricinus communis]

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 264/367 (71%), Positives = 303/367 (82%), Gaps = 20/367 (5%)

Query: 20  LCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRE 79
           L  + LLG   +A+++WASS         HLS   NW    +    +P+V   K    R+
Sbjct: 15  LVCVALLGFGAVANYLWASSF-------PHLS---NWVNVDN---YVPNVILPKDQNPRQ 61

Query: 80  SVAVIDKKGQDA-------ERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFY 132
             A  +KK +         ERFLSATFADLPAPDL+WE+M SAPVPRLDGAAIQIKNL Y
Sbjct: 62  VGADKEKKPKKDKDKKDIPERFLSATFADLPAPDLKWEKMTSAPVPRLDGAAIQIKNLLY 121

Query: 133 VFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQC 192
           VFAGYG++DYVHSHVD+YNFTDN W  RFDMPK+MAHSHLG+V+DGRYIY+VSGQYGPQC
Sbjct: 122 VFAGYGTIDYVHSHVDIYNFTDNTWGKRFDMPKEMAHSHLGMVTDGRYIYVVSGQYGPQC 181

Query: 193 RGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIA 252
           RGPT+ TFVLD+ET++W  +PPLP PRY+PATQLWRGRLHVMGGSKENRHTPGLEHWS+A
Sbjct: 182 RGPTAHTFVLDTETKQWQDMPPLPVPRYAPATQLWRGRLHVMGGSKENRHTPGLEHWSLA 241

Query: 253 VKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEV 312
           VKDGKALEK WRTEIPIPRGGPHRAC V ND+L V+GGQEGDFMAKPGSPIFKCSRR+EV
Sbjct: 242 VKDGKALEKEWRTEIPIPRGGPHRACVVVNDQLIVIGGQEGDFMAKPGSPIFKCSRRNEV 301

Query: 313 VYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEV 372
           VYGDVYMLDD+MKWKVLP MPKP+SHIE AWV+VNNSI+I GGTT+KHP+TK+MIL GEV
Sbjct: 302 VYGDVYMLDDDMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTDKHPVTKKMILNGEV 361

Query: 373 FQFHLDS 379
           FQF+LD+
Sbjct: 362 FQFNLDN 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814328|ref|NP_001242294.1| uncharacterized protein LOC100777575 [Glycine max] gi|255635360|gb|ACU18033.1| unknown [Glycine max]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 253/379 (66%), Positives = 306/379 (80%), Gaps = 8/379 (2%)

Query: 3   RFDHHNKHTYTKTGCW-FLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKS 61
           R ++H  H+ + +    F C+   LG A+IA+   AS S+ +      LS+A+NW ++ +
Sbjct: 10  RHNNHRSHSSSASKIIVFFCLSAFLGLAIIANLFRASLSTHY------LSIATNW-VDTN 62

Query: 62  GVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLD 121
             V+I  + AT  +   +       +    +RFLSATFADLPAP+ +WEQMPSAPVPRLD
Sbjct: 63  APVLILKLAATPHNSNNKGKDGKIAQRIGPQRFLSATFADLPAPEWQWEQMPSAPVPRLD 122

Query: 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYI 181
           G +IQIKN FYVFAGY  LD+VHSH+DV++F+ NKWVD+  MP +MAHSHLG+ SDGRYI
Sbjct: 123 GYSIQIKNTFYVFAGYAHLDHVHSHIDVFDFSINKWVDQIKMPNEMAHSHLGIASDGRYI 182

Query: 182 YIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR 241
           YIVSGQY  QC GPT+ +F LD+ T+KW  +PPLP+PRY+PATQLW+GRLHVMGGSKENR
Sbjct: 183 YIVSGQYCTQCSGPTTASFSLDTATKKWKPLPPLPAPRYAPATQLWKGRLHVMGGSKENR 242

Query: 242 HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGS 301
           HTPG +HWS+AVKDG+ LE+ WR E+PIPRGGPHRAC   ND+LFV+GGQEGDFMAKPGS
Sbjct: 243 HTPGRDHWSLAVKDGETLEQQWRDEVPIPRGGPHRACIAVNDQLFVIGGQEGDFMAKPGS 302

Query: 302 PIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHP 361
           PIFKCSRRHEVVYGDVYMLDDEMKWK+LPPMPKP+SHIECAWVIVNNSIIITGGTTEKHP
Sbjct: 303 PIFKCSRRHEVVYGDVYMLDDEMKWKILPPMPKPDSHIECAWVIVNNSIIITGGTTEKHP 362

Query: 362 MTKRMILVGEVFQFHLDSL 380
           +TKRM+LVGEVFQFHLD++
Sbjct: 363 VTKRMMLVGEVFQFHLDTM 381

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560517|ref|XP_003548538.1| PREDICTED: kelch repeat-containing protein At3g27220-like [Glycine max]

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 250/365 (68%), Positives = 305/365 (83%), Gaps = 12/365 (3%)

Query: 19  FLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNAT---KID 75
           F C+   L  ALIA+   AS S+ +      L++A+NW ++ +  ++IP++ A      +
Sbjct: 24  FFCLSAFLALALIANLFRASLSTHY------LAIATNW-VDTNAPLLIPNLTAIPHNNNN 76

Query: 76  RQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFA 135
            + +   +  ++G   ERFLSATFADLPAP+  W+QMPSAPVPRLDG +IQIKN+FYVFA
Sbjct: 77  NKGKDGKIAKRRG--PERFLSATFADLPAPEWHWKQMPSAPVPRLDGYSIQIKNMFYVFA 134

Query: 136 GYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGP 195
           GY +LD+VHSHVDV++F+ NKWVD+  MPK+MAHSHLG+ SDGRYIYI+SGQYG QC GP
Sbjct: 135 GYANLDHVHSHVDVFDFSSNKWVDQIKMPKEMAHSHLGIASDGRYIYIISGQYGIQCSGP 194

Query: 196 TSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKD 255
           T+ +F LD+ T+KW  +PPLP+PRY+PATQLW+GRLHVMGGSKENRHTPG++HWS+AVKD
Sbjct: 195 TTASFSLDTATKKWKPLPPLPAPRYAPATQLWKGRLHVMGGSKENRHTPGIDHWSLAVKD 254

Query: 256 GKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYG 315
           G+ALE+ WR E+PIPRGGPHRAC   NDRLFV+GGQEGDFMAKPGSPIFKCSRRHEVVYG
Sbjct: 255 GEALEQQWRDEVPIPRGGPHRACIAVNDRLFVIGGQEGDFMAKPGSPIFKCSRRHEVVYG 314

Query: 316 DVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQF 375
           DVYMLD+EMKWK+LP MPKP+SHIECAWVIVNNSIIITGGTTEKHP+TKRM+LVGEVFQF
Sbjct: 315 DVYMLDEEMKWKILPAMPKPDSHIECAWVIVNNSIIITGGTTEKHPVTKRMMLVGEVFQF 374

Query: 376 HLDSL 380
            LD++
Sbjct: 375 RLDTM 379

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113255|ref|XP_002316438.1| predicted protein [Populus trichocarpa] gi|222865478|gb|EEF02609.1| predicted protein [Populus trichocarpa]

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 256/365 (70%), Positives = 301/365 (82%), Gaps = 12/365 (3%)

Query: 19  FLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNW--ALEKSGVVVIPHVNATKIDR 76
            LCV+ LLG  LIAD++WASS   F+SSS      SNW  A      V+IP      +D 
Sbjct: 15  ILCVV-LLGFGLIADYLWASSPH-FASSS----YLSNWVPADNSQSHVIIPKQEPHHVDT 68

Query: 77  QRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAG 136
           +   +    K     +R LSATFADLPAP+L+WE+M +APVPRLDGAAIQIK+L YVFAG
Sbjct: 69  KPPKI----KADGVHDRSLSATFADLPAPELKWEKMANAPVPRLDGAAIQIKDLLYVFAG 124

Query: 137 YGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPT 196
           YG++D VHSHVD+YNFTDN W  RF+MPK+MAHSHLG+V+DGRYIY+V+GQYGPQCRGPT
Sbjct: 125 YGTIDLVHSHVDIYNFTDNTWGRRFNMPKEMAHSHLGMVTDGRYIYVVTGQYGPQCRGPT 184

Query: 197 SRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDG 256
           +R FVLD++T++W  +PPLP PRY+PATQLWRGRLHVMGGSKENRHTP LEHWS+AVKDG
Sbjct: 185 ARNFVLDTKTKQWQDLPPLPVPRYAPATQLWRGRLHVMGGSKENRHTPALEHWSLAVKDG 244

Query: 257 KALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGD 316
           KALEK WR EIPIPRGGPHRAC V +DRL ++GGQEGDFMAKPGSPIFKCSRR+E+VY +
Sbjct: 245 KALEKEWRPEIPIPRGGPHRACVVVSDRLLIIGGQEGDFMAKPGSPIFKCSRRNEIVYDE 304

Query: 317 VYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFH 376
           V+MLDDEMKWK LPPMPKP+SHIE AW IVNNSI+I GGTTEKHP TK+M+LVGEVF+F+
Sbjct: 305 VHMLDDEMKWKPLPPMPKPDSHIEFAWAIVNNSIVIAGGTTEKHPTTKKMVLVGEVFRFN 364

Query: 377 LDSLV 381
           LD+L 
Sbjct: 365 LDTLT 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
TAIR|locus:2033944	415	AT1G51540 [Arabidopsis thalian	0.884	0.831	0.675	1.8e-133
TAIR|locus:2086528	426	AT3G27220 "AT3G27220" [Arabido	0.935	0.856	0.618	3.6e-128
UNIPROTKB|B4L0G9	617	dbo "Kelch-like protein diablo	0.433	0.273	0.275	2e-09
UNIPROTKB|B4J045	624	dbo "Kelch-like protein diablo	0.433	0.270	0.275	2e-09
UNIPROTKB|B4LIG6	624	dbo "Kelch-like protein diablo	0.433	0.270	0.275	2e-09
UNIPROTKB|Q6DFF6	604	klhl20 "Kelch-like protein 20"	0.443	0.286	0.254	3.1e-09
UNIPROTKB|F1NMM8	609	KLHL20 "Kelch-like protein 20"	0.443	0.284	0.254	3.2e-09
UNIPROTKB|Q5ZKD9	610	KLHL20 "Kelch-like protein 20"	0.443	0.283	0.254	3.2e-09
UNIPROTKB|F1NGH0	617	KLHL20 "Kelch-like protein 20"	0.443	0.280	0.254	3.2e-09
UNIPROTKB|B0WWP2	582	dbo "Kelch-like protein diablo	0.433	0.290	0.275	3.8e-09

TAIR|locus:2033944 AT1G51540 [Arabidopsis thaliana (taxid:3702)]

 Score = 1308 (465.5 bits), Expect = 1.8e-133, P = 1.8e-133
 Identities = 243/360 (67%), Positives = 285/360 (79%)

Query:    21 CVLGLLGAALIADFMWXXXXXXXXXXXXXXXXXXNWALEKSGVVVIPHVNATKIDRQRES 80
             C+  LL   LIADF+W                    +L  S   VI  V   + D ++  
Sbjct:    15 CI-ALLATGLIADFLWATSHRFSSAAISAGL-----SLPSSLTTVI--VPGQEKDTKK-- 64

Query:    81 VAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSL 140
                  KK    ER LS TF DLPAP+L+WE+M ++PVPRLDGAAIQI++L YVFAGYG++
Sbjct:    65 -----KKDSVKERKLSNTFQDLPAPELKWEKMAASPVPRLDGAAIQIRDLLYVFAGYGTI 119

Query:   141 DYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTF 200
             D VHSHVD+YNFTDN W  RF+MPKDMAHSHLG+V+DGRYIYIV+GQ+GPQCRGPT++TF
Sbjct:   120 DLVHSHVDIYNFTDNSWGGRFNMPKDMAHSHLGMVTDGRYIYIVTGQFGPQCRGPTAKTF 179

Query:   201 VLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALE 260
             VLD++T  W    PLP PRY+PATQLWRGRLHVMGGSKENR TPGLEHWSIAVKDGK+LE
Sbjct:   180 VLDTDTNTWKDFVPLPVPRYAPATQLWRGRLHVMGGSKENRFTPGLEHWSIAVKDGKSLE 239

Query:   261 KAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYML 320
               WR+EIPIPRGGPHRAC V +DRLFV+GGQEGDFMAKPGSPIFKCSRR EVV+ DVYML
Sbjct:   240 NEWRSEIPIPRGGPHRACVVVDDRLFVIGGQEGDFMAKPGSPIFKCSRRMEVVFSDVYML 299

Query:   321 DDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSL 380
             D+EMKWKV+PPMPKP+SHIE AW +VNNSI+I GGTTEKHP TK+M+LVGE+FQF+L++L
Sbjct:   300 DEEMKWKVMPPMPKPDSHIEFAWKVVNNSIVIVGGTTEKHPETKKMVLVGEIFQFNLNTL 359

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2086528 AT3G27220 "AT3G27220" [Arabidopsis thaliana (taxid:3702)]

 Score = 1258 (447.9 bits), Expect = 3.6e-128, P = 3.6e-128
 Identities = 232/375 (61%), Positives = 283/375 (75%)

Query:     6 HHNKHTYTKTGCWFLCVLGLLGAALIADFMWXXXXXXXXXXXXXXXXXXNWALEKSGVVV 65
             HH+ H  ++     L    +LG   IA F+                    W       + 
Sbjct:     8 HHHHHQSSRRLMLVLYFTSVLGIGFIAAFLCLSSSIPSVSAVFSI-----WVPVNRPEIQ 62

Query:    66 IPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAI 125
             IP +++  +  Q+ S    D K  D  RFLSA FAD+PAP+L+WE+M SAPVPRLDG ++
Sbjct:    63 IPIIDSKIV--QKRSKQSNDTK--DHVRFLSAIFADIPAPELKWEEMESAPVPRLDGYSV 118

Query:   126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVS 185
             QI NL YVF+GYGSLDYVHSHVDV+NFTDNKW DRF  PK+MA+SHLG+V+DGRY+Y+VS
Sbjct:   119 QINNLLYVFSGYGSLDYVHSHVDVFNFTDNKWCDRFHTPKEMANSHLGIVTDGRYVYVVS 178

Query:   186 GQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPG 245
             GQ GPQCRGPTSR+FVLDS T+ W   P LP+PRY+PATQ+WRGRLHVMGGSKENR+   
Sbjct:   179 GQLGPQCRGPTSRSFVLDSFTKTWLEFPSLPAPRYAPATQIWRGRLHVMGGSKENRNAVA 238

Query:   246 LEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFK 305
              +HWSIAVKDGKAL++ WR E+PIPRGGPHRAC V ND+L V+GGQEGDFMAKP SPIFK
Sbjct:   239 FDHWSIAVKDGKALDE-WREEVPIPRGGPHRACVVANDKLLVIGGQEGDFMAKPNSPIFK 297

Query:   306 CSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKR 365
             CSRR E+  G+VYM+D+EMKWK+LPPMPK NSHIE AW+IVNNSI+I GGTT+ HP+TKR
Sbjct:   298 CSRRREIFNGEVYMMDEEMKWKMLPPMPKNNSHIESAWIIVNNSIVIVGGTTDWHPVTKR 357

Query:   366 MILVGEVFQFHLDSL 380
             ++LVGE+F+F LD+L
Sbjct:   358 LVLVGEIFRFQLDTL 372

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009061 "anaerobic respiration" evidence=IEP;IMP

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|B4L0G9 dbo "Kelch-like protein diablo" [Drosophila mojavensis (taxid:7230)]

 Score = 168 (64.2 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 52/189 (27%), Positives = 87/189 (46%)

Query:   108 EWEQMPSAPVP-RLDGAAIQIKN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-P 164
             +W+ +  AP+  R  G  + + N L Y   G+    Y++S ++ Y+   N+W    D+ P
Sbjct:   349 DWKMV--APMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNS-IERYDPQTNQW--SCDVAP 403

Query:   165 KDMAHSHLGV-VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPA 223
                  + +GV V DG ++Y V GQ G QC     R    D +  KW  + P+ + R   A
Sbjct:   404 TTSCRTSVGVAVLDG-FLYAVGGQDGVQCLNHVER---YDPKENKWSKVAPMTTRRLGVA 459

Query:   224 TQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND 283
               +  G L+ +GGS        +E +     D +  +  W    P+     H  C VFN+
Sbjct:   460 VAVLSGHLYAIGGSDGQCPLNTVERY-----DPR--QNKWVAVNPMSTRRKHLGCAVFNN 512

Query:   284 RLFVVGGQE 292
              ++ VGG++
Sbjct:   513 YIYAVGGRD 521

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0016049 "cell growth" evidence=ISS

GO:0050807 "regulation of synapse organization" evidence=ISS

UNIPROTKB|B4J045 dbo "Kelch-like protein diablo" [Drosophila grimshawi (taxid:7222)]

 Score = 168 (64.2 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 52/189 (27%), Positives = 87/189 (46%)

Query:   108 EWEQMPSAPVP-RLDGAAIQIKN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-P 164
             +W+ +  AP+  R  G  + + N L Y   G+    Y++S ++ Y+   N+W    D+ P
Sbjct:   349 DWKMV--APMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNS-IERYDPQTNQW--SCDVAP 403

Query:   165 KDMAHSHLGV-VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPA 223
                  + +GV V DG ++Y V GQ G QC     R    D +  KW  + P+ + R   A
Sbjct:   404 TTSCRTSVGVAVLDG-FLYAVGGQDGVQCLNHVER---YDPKENKWSKVAPMTTRRLGVA 459

Query:   224 TQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND 283
               +  G L+ +GGS        +E +     D +  +  W    P+     H  C VFN+
Sbjct:   460 VAVLSGHLYAIGGSDGQCPLNTVERY-----DPR--QNKWVAVNPMSTRRKHLGCAVFNN 512

Query:   284 RLFVVGGQE 292
              ++ VGG++
Sbjct:   513 YIYAVGGRD 521

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0016049 "cell growth" evidence=ISS

GO:0050807 "regulation of synapse organization" evidence=ISS

UNIPROTKB|B4LIG6 dbo "Kelch-like protein diablo" [Drosophila virilis (taxid:7244)]

 Score = 168 (64.2 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 52/189 (27%), Positives = 87/189 (46%)

Query:   108 EWEQMPSAPVP-RLDGAAIQIKN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-P 164
             +W+ +  AP+  R  G  + + N L Y   G+    Y++S ++ Y+   N+W    D+ P
Sbjct:   349 DWKMV--APMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNS-IERYDPQTNQW--SCDVAP 403

Query:   165 KDMAHSHLGV-VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPA 223
                  + +GV V DG ++Y V GQ G QC     R    D +  KW  + P+ + R   A
Sbjct:   404 TTSCRTSVGVAVLDG-FLYAVGGQDGVQCLNHVER---YDPKENKWSKVAPMTTRRLGVA 459

Query:   224 TQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND 283
               +  G L+ +GGS        +E +     D +  +  W    P+     H  C VFN+
Sbjct:   460 VAVLSGHLYAIGGSDGQCPLNTVERY-----DPR--QNKWVAVNPMSTRRKHLGCAVFNN 512

Query:   284 RLFVVGGQE 292
              ++ VGG++
Sbjct:   513 YIYAVGGRD 521

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0016049 "cell growth" evidence=ISS

GO:0050807 "regulation of synapse organization" evidence=ISS

UNIPROTKB|Q6DFF6 klhl20 "Kelch-like protein 20" [Xenopus laevis (taxid:8355)]

 Score = 166 (63.5 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 47/185 (25%), Positives = 75/185 (40%)

Query:   108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
             EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct:   339 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 396

Query:   168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
               + +GV   G Y+Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct:   397 CRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 453

Query:   228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
              G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct:   454 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 506

Query:   288 VGGQE 292
             VGG++
Sbjct:   507 VGGRD 511

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0016605 "PML body" evidence=ISS

GO:0019964 "interferon-gamma binding" evidence=ISS

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0044444 "cytoplasmic part" evidence=ISS

UNIPROTKB|F1NMM8 KLHL20 "Kelch-like protein 20" [Gallus gallus (taxid:9031)]

 Score = 166 (63.5 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 47/185 (25%), Positives = 75/185 (40%)

Query:   108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
             EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct:   344 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 401

Query:   168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
               + +GV   G Y+Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct:   402 CRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 458

Query:   228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
              G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct:   459 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 511

Query:   288 VGGQE 292
             VGG++
Sbjct:   512 VGGRD 516

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0019964 "interferon-gamma binding" evidence=IEA

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q5ZKD9 KLHL20 "Kelch-like protein 20" [Gallus gallus (taxid:9031)]

 Score = 166 (63.5 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 47/185 (25%), Positives = 75/185 (40%)

Query:   108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
             EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct:   345 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 402

Query:   168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
               + +GV   G Y+Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct:   403 CRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 459

Query:   228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
              G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct:   460 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 512

Query:   288 VGGQE 292
             VGG++
Sbjct:   513 VGGRD 517

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0044444 "cytoplasmic part" evidence=ISS

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=ISS

GO:0016605 "PML body" evidence=ISS

GO:0019964 "interferon-gamma binding" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

UNIPROTKB|F1NGH0 KLHL20 "Kelch-like protein 20" [Gallus gallus (taxid:9031)]

 Score = 166 (63.5 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 47/185 (25%), Positives = 75/185 (40%)

Query:   108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
             EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct:   352 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 409

Query:   168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
               + +GV   G Y+Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct:   410 CRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 466

Query:   228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
              G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct:   467 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 519

Query:   288 VGGQE 292
             VGG++
Sbjct:   520 VGGRD 524

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0019964 "interferon-gamma binding" evidence=IEA

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|B0WWP2 dbo "Kelch-like protein diablo" [Culex quinquefasciatus (taxid:7176)]

 Score = 165 (63.1 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 52/189 (27%), Positives = 87/189 (46%)

Query:   108 EWEQMPSAPVP-RLDGAAIQIKN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-P 164
             +W+ +  AP+  R  G  + + N L Y   G+    Y++S ++ Y+   N+W    D+ P
Sbjct:   317 DWKMV--APMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNS-IERYDPQTNQW--SCDVAP 371

Query:   165 KDMAHSHLGV-VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPA 223
                  + +GV V DG ++Y V GQ G QC     R    D +  KW  + P+ + R   A
Sbjct:   372 TTSCRTSVGVAVLDG-FLYAVGGQDGVQCLNHVER---YDPKENKWSKVAPMTTRRLGVA 427

Query:   224 TQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND 283
               +  G L+ +GGS        +E +     D +  +  W    P+     H  C VFN+
Sbjct:   428 VAVLGGYLYAIGGSDGQCPLNTVERY-----DPR--QNKWCAVSPMSTRRKHLGCAVFNN 480

Query:   284 RLFVVGGQE 292
              ++ VGG++
Sbjct:   481 FIYAVGGRD 489

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0016049 "cell growth" evidence=ISS

GO:0050807 "regulation of synapse organization" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.1.3.n1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	390
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	6e-10
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	2e-09
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	2e-08
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	1e-07
pfam13964	50	pfam13964, Kelch_6, Kelch motif	4e-06
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	2e-05
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	6e-05
TIGR03548	323	TIGR03548, mutarot_permut, cyclically-permuted mut	2e-04
pfam01344	46	pfam01344, Kelch_1, Kelch motif	8e-04

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 60.6 bits (147), Expect = 6e-10
 Identities = 50/237 (21%), Positives = 84/237 (35%), Gaps = 34/237 (14%)

Query: 123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIY 182
            ++ + N+ Y   G    +   + V  Y+     W    ++       + GV      IY
Sbjct: 289 GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL--IYPRKNPGVTVFNNRIY 346

Query: 183 IVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKEN-R 241
           ++ G Y        +          KW   PPL  PRY+P        ++V+GG  +N  
Sbjct: 347 VIGGIYN---SISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDE 403

Query: 242 HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGS 301
               +E +S+           W    P+P           + +++V+GG          S
Sbjct: 404 LLKTVECFSL-------NTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGI---------S 447

Query: 302 PIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPM--PKPNSHIECAWVIVNNSIIITGG 355
            I      +  VY  V   +    KW  L  +  P+ N+ + C   I NN I + GG
Sbjct: 448 YI-----DNIKVYNIVESYNPVTNKWTELSSLNFPRINASL-C---IFNNKIYVVGG 495

Length = 534

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 34/160 (21%)

Query: 203 DSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKA 262
           D++T+ W+ +P L  PR +P   ++  R++V+GG   +     +E W          E  
Sbjct: 317 DTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPG-------ESK 369

Query: 263 WRTEIPI--PRGGPHRACFVF-NDRLFVVGG-QEGDFMAKPGSPIFKCSRRHEVVYGDVY 318
           WR E P+  PR  P   C V  N+ ++V+GG  + D + K                  V 
Sbjct: 370 WREEPPLIFPRYNP---CVVNVNNLIYVIGGISKNDELLK-----------------TVE 409

Query: 319 MLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTT 357
               +  KW    P+P   SH     +  +  I + GG +
Sbjct: 410 CFSLNTNKWSKGSPLPI--SHYGGCAIYHDGKIYVIGGIS 447

Length = 534

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 118 PRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP 164
           PR    +  I     Y+F G      V S V V++ + N W     +P
Sbjct: 1   PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSLP 48

Length = 49

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 2/147 (1%)

Query: 109 WEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMA 168
           W + P    PR +   + + NL YV  G    D +   V+ ++   NKW     +P  ++
Sbjct: 370 WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--IS 427

Query: 169 HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWR 228
           H     +     IY++ G          +     +  T KW  +  L  PR + +  ++ 
Sbjct: 428 HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFN 487

Query: 229 GRLHVMGGSKENRHTPGLEHWSIAVKD 255
            +++V+GG K   +   +E +      
Sbjct: 488 NKIYVVGGDKYEYYINEIEVYDDKTNT 514

Length = 534

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPR 219
             +    VS G  IY+  G         +++  V D ET  W+ +PPLP+PR
Sbjct: 1   PRTGHSAVSVGGKIYVFGGYSNGSK--ASNKVLVYDPETGSWEKLPPLPTPR 50

Length = 50

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYS 221
           G  IY+  G      R   +  +V D +T  W+ +  LP PR  
Sbjct: 1   GGKIYVFGGLGDGGTR--LNDLWVYDLDTNTWEKLGDLPGPRAG 42

Length = 48

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 13/185 (7%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
            W ++P    PR +       N  YV  G  +   + + V+ +   ++KW  R + P   
Sbjct: 322 SWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISL-NTVESWKPGESKW--REEPPLIF 378

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
              +  VV+    IY++ G         T         T KW    PLP   Y       
Sbjct: 379 PRYNPCVVNVNNLIYVIGGISKNDELLKTVE--CFSLNTNKWSKGSPLPISHYGGCAIYH 436

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPI--PRGGPHRACFVFNDRL 285
            G+++V+GG     +   ++ ++I V+    +   W     +  PR     +  +FN+++
Sbjct: 437 DGKIYVIGGIS---YIDNIKVYNI-VESYNPVTNKWTELSSLNFPRINA--SLCIFNNKI 490

Query: 286 FVVGG 290
           +VVGG
Sbjct: 491 YVVGG 495

Length = 534

>gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family protein

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 15/148 (10%)

Query: 106 DLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRF---- 161
           +L+W +    P     GA+I  +N  Y   G  S +   S   VY  T ++  +      
Sbjct: 50  NLKWVKAGQLPYAAAYGASISTENGIYYIGGSNSSE---SFSSVYRITLDESKEALIIET 106

Query: 162 --DMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP-SP 218
              +P  M  +      DG+         G     P+++ +  + ET++W+ +P  P +P
Sbjct: 107 LPSLPFAM-DNGSATYKDGKLYVGGGNANGK----PSNKFYCFNLETQEWEELPDFPGAP 161

Query: 219 RYSPATQLWRGRLHVMGGSKENRHTPGL 246
           R  P     +  L+V GG     +T G 
Sbjct: 162 RVQPVCVKLQNELYVFGGGDNIAYTDGY 189

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. Length = 323

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 36.5 bits (85), Expect = 8e-04
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 170 SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216
           S  GVV  G  IY++ G  G Q     S   V D ET  W  +P +P
Sbjct: 3   SGAGVVVLGGKIYVIGGYDGGQ---SLSSVEVYDPETNTWSKLPSMP 46

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	390
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PLN02193	470	nitrile-specifier protein	100.0
PLN02153	341	epithiospecifier protein	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PLN02153	341	epithiospecifier protein	100.0
PLN02193	470	nitrile-specifier protein	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.97
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.97
KOG1230	521	consensus Protein containing repeated kelch motifs	99.96
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.95
KOG1230	521	consensus Protein containing repeated kelch motifs	99.94
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.91
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.86
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.81
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.42
PF13964	50	Kelch_6: Kelch motif	99.35
PF13964	50	Kelch_6: Kelch motif	99.34
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.3
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.23
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.1
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	99.07
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	99.05
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.99
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.97
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.95
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.88
smart00612	47	Kelch Kelch domain.	98.87
smart00612	47	Kelch Kelch domain.	98.75
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.69
PF13854	42	Kelch_5: Kelch motif	98.67
PLN02772	398	guanylate kinase	98.56
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.39
PLN02772	398	guanylate kinase	98.37
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.36
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.35
PF13854	42	Kelch_5: Kelch motif	98.33
PF03089	337	RAG2: Recombination activating protein 2; InterPro	98.02
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.68
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	97.64
PF03089	337	RAG2: Recombination activating protein 2; InterPro	97.04
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.95
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.76
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.53
PRK13684	334	Ycf48-like protein; Provisional	96.31
PF12768	281	Rax2: Cortical protein marker for cell polarity	96.31
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.27
PRK13684	334	Ycf48-like protein; Provisional	96.1
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	95.88
PF12768	281	Rax2: Cortical protein marker for cell polarity	95.74
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.56
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	94.29
KOG2055	514	consensus WD40 repeat protein [General function pr	94.24
KOG0310	487	consensus Conserved WD40 repeat-containing protein	94.06
KOG2055	514	consensus WD40 repeat protein [General function pr	93.82
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	93.6
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	93.1
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	92.67
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	92.25
PRK04922	433	tolB translocation protein TolB; Provisional	91.92
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	91.92
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	91.39
smart00284	255	OLF Olfactomedin-like domains.	90.46
PRK11028	330	6-phosphogluconolactonase; Provisional	90.44
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.21
PRK00178	430	tolB translocation protein TolB; Provisional	90.03
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.96
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	89.89
PRK11028	330	6-phosphogluconolactonase; Provisional	89.84
PRK04792	448	tolB translocation protein TolB; Provisional	89.72
KOG0310	487	consensus Conserved WD40 repeat-containing protein	89.56
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	89.23
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	88.88
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	88.77
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	88.7
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	88.37
smart00284	255	OLF Olfactomedin-like domains.	87.82
PRK04792	448	tolB translocation protein TolB; Provisional	87.64
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	87.6
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	87.16
KOG2048	691	consensus WD40 repeat protein [General function pr	86.92
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	86.72
PLN00181	793	protein SPA1-RELATED; Provisional	86.67
PRK05137	435	tolB translocation protein TolB; Provisional	85.8
PF13859	310	BNR_3: BNR repeat-like domain; PDB: 3B69_A.	85.04
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	84.62
PF13088	275	BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A	84.42
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	84.01
PF12217	367	End_beta_propel: Catalytic beta propeller domain o	83.82
PF09910	339	DUF2139: Uncharacterized protein conserved in arch	83.64
KOG0296	399	consensus Angio-associated migratory cell protein	83.62
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	83.17
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	81.76
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	81.75
PLN00181	793	protein SPA1-RELATED; Provisional	81.56
PTZ00421	493	coronin; Provisional	80.64
PRK10115	686	protease 2; Provisional	80.24

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=2.8e-47  Score=374.84  Aligned_cols=252  Identities=21%  Similarity=0.387  Sum_probs=229.7

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD  177 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~  177 (390)
                      .+..||+.+++|..+++||.+|..+++++++++|||+||.+.....++++|+|||.+|+|..+++|+.  +|..++++++
T Consensus       302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~--~R~~~~v~~l  379 (571)
T KOG4441|consen  302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT--KRSDFGVAVL  379 (571)
T ss_pred             eeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccC--ccccceeEEE
Confidence            67777788888888889999999999999999999999999533457899999999999999999998  6999999999


Q ss_pred             CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCC-CCCCcceEEeeeecc
Q 016413          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR-HTPGLEHWSIAVKDG  256 (390)
Q Consensus       178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~~~~~~~  256 (390)
                      +|+||++||.++...   ++++++|||.+++|+.+++|+.+|++|++++++++||++||.++.. +..++++||      
T Consensus       380 ~g~iYavGG~dg~~~---l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YD------  450 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKS---LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYD------  450 (571)
T ss_pred             CCEEEEEeccccccc---cccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEc------
Confidence            999999999997654   8899999999999999999999999999999999999999998777 788888888      


Q ss_pred             ccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCC
Q 016413          257 KALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKP  335 (390)
Q Consensus       257 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~  335 (390)
                       |.+++|+.+++|+.+|..+++++++++||++||+++..                 .+..|++|| .+++|+.+++|+.+
T Consensus       451 -P~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~-----------------~~~~VE~ydp~~~~W~~v~~m~~~  512 (571)
T KOG4441|consen  451 -PETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTS-----------------ALSSVERYDPETNQWTMVAPMTSP  512 (571)
T ss_pred             -CCCCceeecCCcccccccceEEEECCEEEEECCccCCC-----------------ccceEEEEcCCCCceeEcccCccc
Confidence             89999999999999999999999999999999998732                 345699999 78999999999999


Q ss_pred             CCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeeccC
Q 016413          336 NSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYR  387 (390)
Q Consensus       336 ~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~  387 (390)
                      |...  ++++.++++|++||+++..       +++++++|||++|+|..++.
T Consensus       513 rs~~--g~~~~~~~ly~vGG~~~~~-------~l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  513 RSAV--GVVVLGGKLYAVGGFDGNN-------NLNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             cccc--cEEEECCEEEEEecccCcc-------ccceeEEcCCCCCceeeCCC
Confidence            8865  4589999999999988887       78999999999999999987

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-44  Score=357.62  Aligned_cols=250  Identities=14%  Similarity=0.185  Sum_probs=215.5

Q ss_pred             hcccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE
Q 016413           97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS  176 (390)
Q Consensus        97 ~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~  176 (390)
                      ..+++||+.+++|..+++||.+|..+++++++++|||+||.+.....++++++|||.+++|..+++|+.  +|..+++++
T Consensus       272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~--~R~~~~~~~  349 (557)
T PHA02713        272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK--NRCRFSLAV  349 (557)
T ss_pred             CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc--hhhceeEEE
Confidence            367899999999999999999999999999999999999986433456889999999999999999987  588999999


Q ss_pred             eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCC---------------
Q 016413          177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR---------------  241 (390)
Q Consensus       177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---------------  241 (390)
                      ++++||++||.++..   ..+++++|||.+++|+.+++||.+|..+++++++++|||+||.....               
T Consensus       350 ~~g~IYviGG~~~~~---~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~  426 (557)
T PHA02713        350 IDDTIYAIGGQNGTN---VERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE  426 (557)
T ss_pred             ECCEEEEECCcCCCC---CCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence            999999999986543   36889999999999999999999999999999999999999986421               


Q ss_pred             ---CCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEE
Q 016413          242 ---HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVY  318 (390)
Q Consensus       242 ---~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~  318 (390)
                         ..+.+       +.|||.+++|+.+++|+.+|..+++++++++||++||.++..                ...+.++
T Consensus       427 ~~~~~~~v-------e~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~----------------~~~~~ve  483 (557)
T PHA02713        427 DTHSSNKV-------IRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEK----------------NVKTCIF  483 (557)
T ss_pred             cccccceE-------EEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCC----------------ccceeEE
Confidence               12233       344489999999999999999999999999999999986431                1234589


Q ss_pred             eeC-CC-CCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeecc
Q 016413          319 MLD-DE-MKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHY  386 (390)
Q Consensus       319 ~yd-~~-~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~  386 (390)
                      +|| .+ ++|+.+++||.+|..+  ++++++|+||++||+++..          ++++||+.+++|..+.
T Consensus       484 ~Ydp~~~~~W~~~~~m~~~r~~~--~~~~~~~~iyv~Gg~~~~~----------~~e~yd~~~~~W~~~~  541 (557)
T PHA02713        484 RYNTNTYNGWELITTTESRLSAL--HTILHDNTIMMLHCYESYM----------LQDTFNVYTYEWNHIC  541 (557)
T ss_pred             EecCCCCCCeeEccccCcccccc--eeEEECCEEEEEeeeccee----------ehhhcCcccccccchh
Confidence            999 66 6999999999988854  5689999999999997632          6999999999999875

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=9.9e-41  Score=324.63  Aligned_cols=319  Identities=14%  Similarity=0.225  Sum_probs=244.1

Q ss_pred             hccEEEEecCCCCCCCccccceeeee--ccCC----CceEeecCCCCCccccccceEEEecCC----Cch--hHHHhhhc
Q 016413           31 IADFMWASSSSSFSSSSAHLSVASNW--ALEK----SGVVVIPHVNATKIDRQRESVAVIDKK----GQD--AERFLSAT   98 (390)
Q Consensus        31 ~~~~l~~~GG~~~~~~~~~~~~~~~~--d~~~----~~W~~l~~~~~~p~~r~~~~~~~~~~~----~~~--~~~~~~~~   98 (390)
                      .+++|+.|+|.+.    ..++.+..|  +|.+    ++|..+.++...|.+|..|+++++++.    |..  .......+
T Consensus       119 ~~~~ivgf~G~~~----~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~  194 (470)
T PLN02193        119 QGGKIVGFHGRST----DVLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKH  194 (470)
T ss_pred             cCCeEEEEeccCC----CcEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCc
Confidence            5899999999832    246666566  6544    799999987666667999999988766    221  11123347


Q ss_pred             ccccccCCCCeEECCC---CCC-cCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCC-CCCCcceE
Q 016413           99 FADLPAPDLEWEQMPS---APV-PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHSHLG  173 (390)
Q Consensus        99 ~~~~~~~~~~W~~~~~---~~~-~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~-~~~r~~~~  173 (390)
                      +++||+.+++|+.+++   +|. +|..|++++++++||||||.+... .++++++||+.+++|+++++++. |.+|..|+
T Consensus       195 v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~  273 (470)
T PLN02193        195 LYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS  273 (470)
T ss_pred             EEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence            9999999999998865   333 256888999999999999987644 46899999999999999988732 34799999


Q ss_pred             EEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC---CCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEE
Q 016413          174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWS  250 (390)
Q Consensus       174 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  250 (390)
                      +++.+++|||+||.+...   .++++++||+.+++|+.+++   +|.+|..|++++++++|||+||..+.. .+++++||
T Consensus       274 ~~~~~~~iYv~GG~~~~~---~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~-~~dv~~yD  349 (470)
T PLN02193        274 MAADEENVYVFGGVSATA---RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE-VDDVHYYD  349 (470)
T ss_pred             EEEECCEEEEECCCCCCC---CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc-cCceEEEE
Confidence            999999999999987643   37899999999999999874   678899999999999999999986432 35556665


Q ss_pred             eeeeccccccCCeEEccCC---CCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCe
Q 016413          251 IAVKDGKALEKAWRTEIPI---PRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW  326 (390)
Q Consensus       251 ~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W  326 (390)
                             +.+++|+.++++   |.+|..+++++++++|||+||......        ........+++++++|| .+++|
T Consensus       350 -------~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~--------~~~~~~~~~~ndv~~~D~~t~~W  414 (470)
T PLN02193        350 -------PVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDP--------LAHVGPGQLTDGTFALDTETLQW  414 (470)
T ss_pred             -------CCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCcc--------ccccCccceeccEEEEEcCcCEE
Confidence                   789999998654   788888899999999999999864210        00011224678999999 78899


Q ss_pred             EECCCC------CCCCCcceeEEEEEC--CEEEEEcCCCCCCCcceeeEEeeeEEEeecCc
Q 016413          327 KVLPPM------PKPNSHIECAWVIVN--NSIIITGGTTEKHPMTKRMILVGEVFQFHLDS  379 (390)
Q Consensus       327 ~~~~~~------~~~~~~~~~~~~~~~--~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~  379 (390)
                      +.++.+      |.+|..+.++++.+.  +.|+++||.+..+.      +++|+|+|++++
T Consensus       415 ~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~------~~~D~~~~~~~~  469 (470)
T PLN02193        415 ERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTND------RFDDLFFYGIDS  469 (470)
T ss_pred             EEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccc------cccceEEEecCC
Confidence            998743      455655543333333  45999999986654      789999998765

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=9.9e-41  Score=313.40  Aligned_cols=299  Identities=17%  Similarity=0.283  Sum_probs=222.9

Q ss_pred             CCCceEeecCCCC-CccccccceEEEecCC-----Cchh-HHHhhhcccccccCCCCeEECCCCC-CcCC---CceEEEE
Q 016413           59 EKSGVVVIPHVNA-TKIDRQRESVAVIDKK-----GQDA-ERFLSATFADLPAPDLEWEQMPSAP-VPRL---DGAAIQI  127 (390)
Q Consensus        59 ~~~~W~~l~~~~~-~p~~r~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~W~~~~~~~-~~R~---~~~~~~~  127 (390)
                      ...+|.+++.... .|.+|..|+++++++.     |... ......+++.||+.+++|+.+++++ .||.   +|+++++
T Consensus         5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~   84 (341)
T PLN02153          5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV   84 (341)
T ss_pred             cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE
Confidence            5678999987432 3455999999888766     2211 1223348999999999999998764 3443   6888999


Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCC---CCCCcceEEEEeCCEEEEEeceeCCCC---CCCCceEEE
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK---DMAHSHLGVVSDGRYIYIVSGQYGPQC---RGPTSRTFV  201 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~---~~~~~~v~~  201 (390)
                      +++||||||.+... .++++++||+.+++|+.+++|+.   |.+|..|++++.+++|||+||.+....   ...++++++
T Consensus        85 ~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         85 GTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             CCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEE
Confidence            99999999987644 46789999999999999987732   447899999999999999999864321   123578999


Q ss_pred             EECCCCCeEeCCCCC---CCCCCceEEEECCEEEEEccCCCC--------CCCCCcceEEeeeeccccccCCeEEccC--
Q 016413          202 LDSETRKWDSIPPLP---SPRYSPATQLWRGRLHVMGGSKEN--------RHTPGLEHWSIAVKDGKALEKAWRTEIP--  268 (390)
Q Consensus       202 yd~~~~~W~~~~~~p---~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~~~~~~~~~~~~~~~W~~~~~--  268 (390)
                      ||+++++|+.++++.   .+|.+|++++++++|||+||....        ...+.+++||       +.+++|+.+..  
T Consensus       164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd-------~~~~~W~~~~~~g  236 (341)
T PLN02153        164 YNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFD-------PASGKWTEVETTG  236 (341)
T ss_pred             EECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEE-------cCCCcEEeccccC
Confidence            999999999998764   789999999999999999997421        1123344444       79999999864  


Q ss_pred             -CCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECC-----CCCCCCCccee
Q 016413          269 -IPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP-----PMPKPNSHIEC  341 (390)
Q Consensus       269 -~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~-----~~~~~~~~~~~  341 (390)
                       +|.+|..+++++++++|||+||......        .........++++|+|| .+++|+.+.     ++|.++..+++
T Consensus       237 ~~P~~r~~~~~~~~~~~iyv~GG~~~~~~--------~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~  308 (341)
T PLN02153        237 AKPSARSVFAHAVVGKYIIIFGGEVWPDL--------KGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTT  308 (341)
T ss_pred             CCCCCcceeeeEEECCEEEEECcccCCcc--------ccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccc
Confidence             6888888899999999999999743210        00011234567899999 789999886     34444443444


Q ss_pred             EEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCc
Q 016413          342 AWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDS  379 (390)
Q Consensus       342 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~  379 (390)
                      +.+..+++|||+||+++..+      .++|+|+|++.+
T Consensus       309 ~~v~~~~~~~~~gG~~~~~~------~~~~~~~~~~~~  340 (341)
T PLN02153        309 ATVYGKNGLLMHGGKLPTNE------RTDDLYFYAVNS  340 (341)
T ss_pred             cccCCcceEEEEcCcCCCCc------cccceEEEeccc
Confidence            43444568999999987654      678999998653

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=3.9e-41  Score=331.39  Aligned_cols=276  Identities=20%  Similarity=0.321  Sum_probs=244.7

Q ss_pred             hhccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCC-----Cch-hHHHhhhcccccc
Q 016413           30 LIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKK-----GQD-AERFLSATFADLP  103 (390)
Q Consensus        30 ~~~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~  103 (390)
                      ...+.||++||....  ....+.+++|||.+++|..+++|+.+   |..++++++++.     |.+ ....++ .+++||
T Consensus       282 ~~~~~l~~vGG~~~~--~~~~~~ve~yd~~~~~w~~~a~m~~~---r~~~~~~~~~~~lYv~GG~~~~~~~l~-~ve~YD  355 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQ--GQSLRSVECYDPKTNEWSSLAPMPSP---RCRVGVAVLNGKLYVVGGYDSGSDRLS-SVERYD  355 (571)
T ss_pred             CCCCeEEEECCCCCC--CcccceeEEecCCcCcEeecCCCCcc---cccccEEEECCEEEEEccccCCCcccc-eEEEec
Confidence            456889999999332  56788999999999999999999988   999999999877     344 233444 999999


Q ss_pred             cCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEE
Q 016413          104 APDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYI  183 (390)
Q Consensus       104 ~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv  183 (390)
                      +..++|..+++|..+|..++++++++.||++||.++... ++++|+|||.+++|+.+++|+.  +|.++++++.+++||+
T Consensus       356 ~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~-l~svE~YDp~~~~W~~va~m~~--~r~~~gv~~~~g~iYi  432 (571)
T KOG4441|consen  356 PRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKS-LNSVECYDPVTNKWTPVAPMLT--RRSGHGVAVLGGKLYI  432 (571)
T ss_pred             CCCCceeccCCccCccccceeEEECCEEEEEeccccccc-cccEEEecCCCCcccccCCCCc--ceeeeEEEEECCEEEE
Confidence            999999999999999999999999999999999997664 6889999999999999999998  6999999999999999


Q ss_pred             EeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCe
Q 016413          184 VSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAW  263 (390)
Q Consensus       184 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W  263 (390)
                      +||.++..  ..++++++|||.+++|+.+++|+.+|.++++++++++||++||+++......+++||       |.+++|
T Consensus       433 ~GG~~~~~--~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~yd-------p~~~~W  503 (571)
T KOG4441|consen  433 IGGGDGSS--NCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYD-------PETNQW  503 (571)
T ss_pred             EcCcCCCc--cccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEc-------CCCCce
Confidence            99998876  248999999999999999999999999999999999999999998855556667776       899999


Q ss_pred             EEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcce
Q 016413          264 RTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIE  340 (390)
Q Consensus       264 ~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~  340 (390)
                      +.+++|+.+|...++++++++||++||+++.                 .+++.|..|| .+++|+..+++...+...+
T Consensus       504 ~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~-----------------~~l~~ve~ydp~~d~W~~~~~~~~~~~~~~  564 (571)
T KOG4441|consen  504 TMVAPMTSPRSAVGVVVLGGKLYAVGGFDGN-----------------NNLNTVECYDPETDTWTEVTEPESGRGGAG  564 (571)
T ss_pred             eEcccCccccccccEEEECCEEEEEecccCc-----------------cccceeEEcCCCCCceeeCCCccccccCcc
Confidence            9999999999999999999999999998876                 3678899999 7899999998555555443

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=8.5e-41  Score=330.37  Aligned_cols=263  Identities=13%  Similarity=0.224  Sum_probs=216.3

Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCC----Cc-hhHHHhhhcccccccCCCC
Q 016413           34 FMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKK----GQ-DAERFLSATFADLPAPDLE  108 (390)
Q Consensus        34 ~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~  108 (390)
                      .|++.||. .   ......+++|||.+++|..+++|+.+   |..++++++++.    |. ........++++||+.+++
T Consensus       259 ~l~~~~g~-~---~~~~~~v~~yd~~~~~W~~l~~mp~~---r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~  331 (557)
T PHA02713        259 CLVCHDTK-Y---NVCNPCILVYNINTMEYSVISTIPNH---IINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKI  331 (557)
T ss_pred             EEEEecCc-c---ccCCCCEEEEeCCCCeEEECCCCCcc---ccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCe
Confidence            46666653 1   11234789999999999999999887   888888887766    22 1111123489999999999


Q ss_pred             eEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEecee
Q 016413          109 WEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQY  188 (390)
Q Consensus       109 W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~  188 (390)
                      |..+++||.+|..+++++++++|||+||.++.. .++++++|||.+++|+.+++||.  +|..+++++++++||++||.+
T Consensus       332 W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp~--~r~~~~~~~~~g~IYviGG~~  408 (557)
T PHA02713        332 HVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMPI--ALSSYGMCVLDQYIYIIGGRT  408 (557)
T ss_pred             EeeCCCCcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECCCCCc--ccccccEEEECCEEEEEeCCC
Confidence            999999999999999999999999999987544 46789999999999999999998  578889999999999999986


Q ss_pred             CCCC---------------CCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCC-CCCcceEEee
Q 016413          189 GPQC---------------RGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRH-TPGLEHWSIA  252 (390)
Q Consensus       189 ~~~~---------------~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~~~~  252 (390)
                      +...               ....+.+++|||++++|+.+++|+.+|..+++++++++|||+||.++... ...+++||  
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Yd--  486 (557)
T PHA02713        409 EHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYN--  486 (557)
T ss_pred             cccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEec--
Confidence            4321               01257899999999999999999999999999999999999999864322 22344554  


Q ss_pred             eecccccc-CCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECC
Q 016413          253 VKDGKALE-KAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP  330 (390)
Q Consensus       253 ~~~~~~~~-~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~  330 (390)
                           |.+ ++|+.+++||.+|..+++++++++||++||.++.                    ..+++|| .+++|+.++
T Consensus       487 -----p~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~--------------------~~~e~yd~~~~~W~~~~  541 (557)
T PHA02713        487 -----TNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESY--------------------MLQDTFNVYTYEWNHIC  541 (557)
T ss_pred             -----CCCCCCeeEccccCcccccceeEEECCEEEEEeeecce--------------------eehhhcCcccccccchh
Confidence                 898 8999999999999999999999999999998752                    2589999 789999987


Q ss_pred             CCC
Q 016413          331 PMP  333 (390)
Q Consensus       331 ~~~  333 (390)
                      +-.
T Consensus       542 ~~~  544 (557)
T PHA02713        542 HQH  544 (557)
T ss_pred             hhc
Confidence            543

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=4.6e-39  Score=302.08  Aligned_cols=262  Identities=18%  Similarity=0.259  Sum_probs=201.3

Q ss_pred             cCCCCeEECCC----CCCcCCCceEEEECCEEEEEecCCCC-CCCCCeEEEEeCCCCceeecCCCCC-CCC-CcceEEEE
Q 016413          104 APDLEWEQMPS----APVPRLDGAAIQIKNLFYVFAGYGSL-DYVHSHVDVYNFTDNKWVDRFDMPK-DMA-HSHLGVVS  176 (390)
Q Consensus       104 ~~~~~W~~~~~----~~~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~~l~~-~~~-r~~~~~~~  176 (390)
                      +.+.+|.++.+    +|.||..|++++++++|||+||.... ....+++++||+.+++|+.+++++. |.. +..+++++
T Consensus         4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~   83 (341)
T PLN02153          4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA   83 (341)
T ss_pred             ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence            35668999976    78999999999999999999998643 3345789999999999999887753 322 34788899


Q ss_pred             eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCC-----CCCCCCceEEEECCEEEEEccCCCCCC------CCC
Q 016413          177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL-----PSPRYSPATQLWRGRLHVMGGSKENRH------TPG  245 (390)
Q Consensus       177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~~~------~~~  245 (390)
                      ++++||||||.+...   .++++++||+++++|+.+++|     |.+|..|++++++++|||+||......      ..+
T Consensus        84 ~~~~iyv~GG~~~~~---~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  160 (341)
T PLN02153         84 VGTKLYIFGGRDEKR---EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT  160 (341)
T ss_pred             ECCEEEEECCCCCCC---ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccce
Confidence            999999999986543   368999999999999999877     889999999999999999999864321      123


Q ss_pred             cceEEeeeeccccccCCeEEccCC---CCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-
Q 016413          246 LEHWSIAVKDGKALEKAWRTEIPI---PRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-  321 (390)
Q Consensus       246 ~~~~~~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-  321 (390)
                      +++||       +.+++|+.++++   |.+|..+++++++++|||+||.......  .     .  .....++++++|| 
T Consensus       161 v~~yd-------~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~--g-----G--~~~~~~~~v~~yd~  224 (341)
T PLN02153        161 IEAYN-------IADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILP--G-----G--KSDYESNAVQFFDP  224 (341)
T ss_pred             EEEEE-------CCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecccccccc--C-----C--ccceecCceEEEEc
Confidence            33443       799999998765   3678888899999999999997532100  0     0  0012257899999 


Q ss_pred             CCCCeEECCC---CCCCCCcceeEEEEECCEEEEEcCCCCCCC--cceeeEEeeeEEEeecCccceeecc
Q 016413          322 DEMKWKVLPP---MPKPNSHIECAWVIVNNSIIITGGTTEKHP--MTKRMILVGEVFQFHLDSLVIIYHY  386 (390)
Q Consensus       322 ~~~~W~~~~~---~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~--~~~~~~~~~~v~~yd~~~~~W~~v~  386 (390)
                      .+++|+.++.   +|.+|..  +++++++++||||||......  +.......+++|+||+++++|+.+.
T Consensus       225 ~~~~W~~~~~~g~~P~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~  292 (341)
T PLN02153        225 ASGKWTEVETTGAKPSARSV--FAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG  292 (341)
T ss_pred             CCCcEEeccccCCCCCCcce--eeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence            7889999874   5666654  456889999999999753210  0011125679999999999999885

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=5.6e-39  Score=312.38  Aligned_cols=260  Identities=20%  Similarity=0.277  Sum_probs=208.0

Q ss_pred             ccccccCC----CCeEECCC---CCCcCCCceEEEECCEEEEEecCCCCC-CCCCeEEEEeCCCCceeecCCCC-CCC-C
Q 016413           99 FADLPAPD----LEWEQMPS---APVPRLDGAAIQIKNLFYVFAGYGSLD-YVHSHVDVYNFTDNKWVDRFDMP-KDM-A  168 (390)
Q Consensus        99 ~~~~~~~~----~~W~~~~~---~~~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~~v~~yd~~~~~W~~~~~l~-~~~-~  168 (390)
                      ++.+++.+    ++|.++++   +|.||..|++++++++|||+||..... ...+++++||+.+++|+.++.+. .|. +
T Consensus       139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~  218 (470)
T PLN02193        139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLS  218 (470)
T ss_pred             EEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCc
Confidence            44445433    79999876   688999999999999999999986433 24468999999999999876542 232 3


Q ss_pred             CcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCC---CCCCCCceEEEECCEEEEEccCCCCCCCCC
Q 016413          169 HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL---PSPRYSPATQLWRGRLHVMGGSKENRHTPG  245 (390)
Q Consensus       169 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~  245 (390)
                      |..+++++++++||||||.+...   .++++++||+.+++|++++++   |.+|+.|++++++++|||+||.........
T Consensus       219 ~~~~~~v~~~~~lYvfGG~~~~~---~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~  295 (470)
T PLN02193        219 CLGVRMVSIGSTLYVFGGRDASR---QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKT  295 (470)
T ss_pred             ccceEEEEECCEEEEECCCCCCC---CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcce
Confidence            56888999999999999987543   478999999999999999987   889999999999999999999876555555


Q ss_pred             cceEEeeeeccccccCCeEEccC---CCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-
Q 016413          246 LEHWSIAVKDGKALEKAWRTEIP---IPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-  321 (390)
Q Consensus       246 ~~~~~~~~~~~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-  321 (390)
                      +++||       +.+++|+.+++   +|.+|..+++++++++||++||.++.                  .++++++|| 
T Consensus       296 ~~~yd-------~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~------------------~~~dv~~yD~  350 (470)
T PLN02193        296 LDSYN-------IVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC------------------EVDDVHYYDP  350 (470)
T ss_pred             EEEEE-------CCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC------------------ccCceEEEEC
Confidence            66666       68999999864   66778888999999999999997642                  246799999 


Q ss_pred             CCCCeEECCCC---CCCCCcceeEEEEECCEEEEEcCCCCCCC--cceeeEEeeeEEEeecCccceeeccCC
Q 016413          322 DEMKWKVLPPM---PKPNSHIECAWVIVNNSIIITGGTTEKHP--MTKRMILVGEVFQFHLDSLVIIYHYRP  388 (390)
Q Consensus       322 ~~~~W~~~~~~---~~~~~~~~~~~~~~~~~l~v~GG~~~~~~--~~~~~~~~~~v~~yd~~~~~W~~v~~~  388 (390)
                      .+++|+.++.+   |.+|..  +++++++++|||+||......  ........+++++||+++++|+.+..+
T Consensus       351 ~t~~W~~~~~~g~~P~~R~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~  420 (470)
T PLN02193        351 VQDKWTQVETFGVRPSERSV--FASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKF  420 (470)
T ss_pred             CCCEEEEeccCCCCCCCcce--eEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccC
Confidence            78899999755   666654  456889999999999864221  111122678999999999999998754

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=3.9e-39  Score=320.58  Aligned_cols=257  Identities=20%  Similarity=0.306  Sum_probs=216.2

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD  177 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~  177 (390)
                      .+..|+...++|..+++++. +..+++++++++|||+||.+......+++++||+.+++|..+++|+.  +|..+++++.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~--~R~~~~~~~~  341 (534)
T PHA03098        265 NYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIY--PRKNPGVTVF  341 (534)
T ss_pred             eeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCc--ccccceEEEE
Confidence            45567888889998877664 34578899999999999998666566789999999999999999987  5889999999


Q ss_pred             CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCC-CCCCCcceEEeeeecc
Q 016413          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKEN-RHTPGLEHWSIAVKDG  256 (390)
Q Consensus       178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~~~~~~~  256 (390)
                      +++||++||.+..   ...+++++||+.+++|+.+++||.+|..+++++++++|||+||.... ...+.+++||      
T Consensus       342 ~~~lyv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd------  412 (534)
T PHA03098        342 NNRIYVIGGIYNS---ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFS------  412 (534)
T ss_pred             CCEEEEEeCCCCC---EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEe------
Confidence            9999999998743   34789999999999999999999999999999999999999997432 2345556665      


Q ss_pred             ccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCC
Q 016413          257 KALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKP  335 (390)
Q Consensus       257 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~  335 (390)
                       |.+++|+.++++|.+|..+++++++++|||+||.+....              ....+.+++|| .+++|+.+++++.|
T Consensus       413 -~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~--------------~~~~~~v~~yd~~~~~W~~~~~~~~~  477 (534)
T PHA03098        413 -LNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN--------------IKVYNIVESYNPVTNKWTELSSLNFP  477 (534)
T ss_pred             -CCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC--------------CcccceEEEecCCCCceeeCCCCCcc
Confidence             789999999999999999999999999999999764321              01245699999 78899999999988


Q ss_pred             CCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeeccCCCC
Q 016413          336 NSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYRPPK  390 (390)
Q Consensus       336 ~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~P~  390 (390)
                      |..+  +++..+++|||+||.+...       ..+++++||+++++|..++.+|+
T Consensus       478 r~~~--~~~~~~~~iyv~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~p~  523 (534)
T PHA03098        478 RINA--SLCIFNNKIYVVGGDKYEY-------YINEIEVYDDKTNTWTLFCKFPK  523 (534)
T ss_pred             cccc--eEEEECCEEEEEcCCcCCc-------ccceeEEEeCCCCEEEecCCCcc
Confidence            8765  4477899999999987654       45689999999999999999885

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=7.2e-39  Score=301.75  Aligned_cols=293  Identities=17%  Similarity=0.210  Sum_probs=209.5

Q ss_pred             ecCCCCCccccccceEEEecCCCchhHHHhhhccccccc--CCCCeEECCCCC-CcCCCceEEEECCEEEEEecCCCCC-
Q 016413           66 IPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPA--PDLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYGSLD-  141 (390)
Q Consensus        66 l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~W~~~~~~~-~~R~~~~~~~~~~~lyv~GG~~~~~-  141 (390)
                      +|+|+.+   |...+++++++.-+.........++.||+  .+++|..+++|| .+|..+++++++++|||+||..... 
T Consensus         1 ~~~lp~~---~~~~~~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~   77 (346)
T TIGR03547         1 LPDLPVG---FKNGTGAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANS   77 (346)
T ss_pred             CCCCCcc---ccCceEEEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCC
Confidence            3555555   77777777766622222222347888885  578999999999 5899999999999999999985422 


Q ss_pred             ----CCCCeEEEEeCCCCceeecCCCCCCCCCcceEEE-EeCCEEEEEeceeCCCC------------------------
Q 016413          142 ----YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV-SDGRYIYIVSGQYGPQC------------------------  192 (390)
Q Consensus       142 ----~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~------------------------  192 (390)
                          ..++++|+||+.+++|+.++. +.|.+|.+++++ +++++||++||.+....                        
T Consensus        78 ~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (346)
T TIGR03547        78 EGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAY  156 (346)
T ss_pred             CCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence                246789999999999999974 334467677665 78999999999863210                        


Q ss_pred             -------CCCCceEEEEECCCCCeEeCCCCCC-CCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeE
Q 016413          193 -------RGPTSRTFVLDSETRKWDSIPPLPS-PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWR  264 (390)
Q Consensus       193 -------~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~  264 (390)
                             ....+++++||+.+++|+.+++||. +|..+++++++++|||+||...... ...+.   ..|++++.+++|+
T Consensus       157 ~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~---~~y~~~~~~~~W~  232 (346)
T TIGR03547       157 FSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGL-RTAEV---KQYLFTGGKLEWN  232 (346)
T ss_pred             hCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCc-cchhe---EEEEecCCCceee
Confidence                   0013789999999999999999996 6889999999999999999754321 12222   2344557889999


Q ss_pred             EccCCCCCC-------CceeEEEECCEEEEEcCCCCCCCCC--CCCCccccccccceecCcEEeeC-CCCCeEECCCCCC
Q 016413          265 TEIPIPRGG-------PHRACFVFNDRLFVVGGQEGDFMAK--PGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPK  334 (390)
Q Consensus       265 ~~~~~p~~~-------~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~  334 (390)
                      .+++||.+|       ..+.+++++++|||+||.+......  ..+.......  ...+..+++|| ++++|+.+++||.
T Consensus       233 ~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~yd~~~~~W~~~~~lp~  310 (346)
T TIGR03547       233 KLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEG--LIKAWSSEVYALDNGKWSKVGKLPQ  310 (346)
T ss_pred             ecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCC--CCceeEeeEEEecCCcccccCCCCC
Confidence            999987654       2344788999999999986321000  0000000000  00123578899 7889999999999


Q ss_pred             CCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEee
Q 016413          335 PNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFH  376 (390)
Q Consensus       335 ~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd  376 (390)
                      +|..  +++++++++|||+||.+....      .+++|+.|.
T Consensus       311 ~~~~--~~~~~~~~~iyv~GG~~~~~~------~~~~v~~~~  344 (346)
T TIGR03547       311 GLAY--GVSVSWNNGVLLIGGENSGGK------AVTDVYLLS  344 (346)
T ss_pred             Ccee--eEEEEcCCEEEEEeccCCCCC------EeeeEEEEE
Confidence            8764  456889999999999976654      677887764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=2.3e-38  Score=300.60  Aligned_cols=305  Identities=16%  Similarity=0.158  Sum_probs=219.0

Q ss_pred             ceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccC--CCCeEECCCCC-CcCCCceEEEECCEEEEEecCC
Q 016413           62 GVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAP--DLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYG  138 (390)
Q Consensus        62 ~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~W~~~~~~~-~~R~~~~~~~~~~~lyv~GG~~  138 (390)
                      .+..+++|+.+   |...+++++++.-+.........++.||..  +++|.+++++| .+|..+++++++++|||+||..
T Consensus        18 ~~~~l~~lP~~---~~~~~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~   94 (376)
T PRK14131         18 NAEQLPDLPVP---FKNGTGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIG   94 (376)
T ss_pred             ecccCCCCCcC---ccCCeEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCC
Confidence            46678888877   777777777665222111122356777765  47899999998 5899999999999999999986


Q ss_pred             C-C----CCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCC---------------------
Q 016413          139 S-L----DYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQ---------------------  191 (390)
Q Consensus       139 ~-~----~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~---------------------  191 (390)
                      . .    ...++++|+||+.+++|+.++++ .|.++..+++++ .+++||++||.+...                     
T Consensus        95 ~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i  173 (376)
T PRK14131         95 KTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKI  173 (376)
T ss_pred             CCCCCCceeEcccEEEEeCCCCEEEeCCCC-CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhh
Confidence            4 1    12467899999999999999863 244566677666 899999999975310                     


Q ss_pred             ----------CCCCCceEEEEECCCCCeEeCCCCCC-CCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeecccccc
Q 016413          192 ----------CRGPTSRTFVLDSETRKWDSIPPLPS-PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALE  260 (390)
Q Consensus       192 ----------~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  260 (390)
                                .....+++++||+.+++|+.+++||. +|..++++.++++|||+||..... ....+.|+   +++++.+
T Consensus       174 ~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~-~~~~~~~~---~~~~~~~  249 (376)
T PRK14131        174 NDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPG-LRTDAVKQ---GKFTGNN  249 (376)
T ss_pred             HHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCC-cCChhheE---EEecCCC
Confidence                      00124789999999999999999996 788889999999999999975432 12333333   3445789


Q ss_pred             CCeEEccCCCCCCC--------ceeEEEECCEEEEEcCCCCCCCC--CCCCCccccccccceecCcEEeeC-CCCCeEEC
Q 016413          261 KAWRTEIPIPRGGP--------HRACFVFNDRLFVVGGQEGDFMA--KPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVL  329 (390)
Q Consensus       261 ~~W~~~~~~p~~~~--------~~~~~~~~~~iyv~GG~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~  329 (390)
                      ++|+.+++||.+|.        ++.+++++++|||+||.+.....  ..++....... .. -...+++|| .+++|+.+
T Consensus       250 ~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~-~~-~~~~~e~yd~~~~~W~~~  327 (376)
T PRK14131        250 LKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEG-LK-KSWSDEIYALVNGKWQKV  327 (376)
T ss_pred             cceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccC-Cc-ceeehheEEecCCccccc
Confidence            99999999876653        22357889999999997632100  00000000000 00 012477899 78899999


Q ss_pred             CCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceee
Q 016413          330 PPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIY  384 (390)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  384 (390)
                      ++||.||..+  +++.++++|||+||......      .+++|++|+++.+.+..
T Consensus       328 ~~lp~~r~~~--~av~~~~~iyv~GG~~~~~~------~~~~v~~~~~~~~~~~~  374 (376)
T PRK14131        328 GELPQGLAYG--VSVSWNNGVLLIGGETAGGK------AVSDVTLLSWDGKKLTV  374 (376)
T ss_pred             CcCCCCccce--EEEEeCCEEEEEcCCCCCCc------EeeeEEEEEEcCCEEEE
Confidence            9999998764  46899999999999876543      67899999999988764

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=6.2e-38  Score=292.40  Aligned_cols=247  Identities=18%  Similarity=0.272  Sum_probs=183.3

Q ss_pred             cccccc-cCC-CCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCce----eecCCCCCCCCCcc
Q 016413           98 TFADLP-APD-LEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW----VDRFDMPKDMAHSH  171 (390)
Q Consensus        98 ~~~~~~-~~~-~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W----~~~~~l~~~~~r~~  171 (390)
                      +++.++ +.. .+|..+++||.+|..+++++++++||++||.+... .++++++||+.+++|    +.+++||.  +|..
T Consensus        40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~--~~~~  116 (323)
T TIGR03548        40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSE-RFSSVYRITLDESKEELICETIGNLPF--TFEN  116 (323)
T ss_pred             eeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCC-CceeEEEEEEcCCceeeeeeEcCCCCc--CccC
Confidence            555553 322 37999999999999888999999999999987644 468899999999998    67888887  5778


Q ss_pred             eEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCC-CCCCceEEEECCEEEEEccCCCCCCCCCcceEE
Q 016413          172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS-PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWS  250 (390)
Q Consensus       172 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  250 (390)
                      +++++++++|||+||....   ...+++++||+.+++|+++++||. +|..+++++++++|||+||...... .++++||
T Consensus       117 ~~~~~~~~~iYv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~-~~~~~yd  192 (323)
T TIGR03548       117 GSACYKDGTLYVGGGNRNG---KPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAY-TDGYKYS  192 (323)
T ss_pred             ceEEEECCEEEEEeCcCCC---ccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccc-cceEEEe
Confidence            8999999999999997543   237899999999999999999984 7899999999999999999864322 2334444


Q ss_pred             eeeeccccccCCeEEccCC-----CCCCCcee-EEEECCEEEEEcCCCCCCCCCCCC--------------Ccc-ccccc
Q 016413          251 IAVKDGKALEKAWRTEIPI-----PRGGPHRA-CFVFNDRLFVVGGQEGDFMAKPGS--------------PIF-KCSRR  309 (390)
Q Consensus       251 ~~~~~~~~~~~~W~~~~~~-----p~~~~~~~-~~~~~~~iyv~GG~~~~~~~~~~~--------------~~~-~~~~~  309 (390)
                             |.+++|+.++++     |+.+..++ +++.+++|||+||.+.....+...              ..+ .....
T Consensus       193 -------~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (323)
T TIGR03548       193 -------PKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPE  265 (323)
T ss_pred             -------cCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCcc
Confidence                   799999999765     33333333 445579999999986421000000              000 00001


Q ss_pred             cceecCcEEeeC-CCCCeEECCCCC-CCCCcceeEEEEECCEEEEEcCCCCCC
Q 016413          310 HEVVYGDVYMLD-DEMKWKVLPPMP-KPNSHIECAWVIVNNSIIITGGTTEKH  360 (390)
Q Consensus       310 ~~~~~~~v~~yd-~~~~W~~~~~~~-~~~~~~~~~~~~~~~~l~v~GG~~~~~  360 (390)
                      +..+.+++++|| .+++|+.++++| .+|..  ++++.++++||++||.....
T Consensus       266 ~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~--~~~~~~~~~iyv~GG~~~pg  316 (323)
T TIGR03548       266 WYNWNRKILIYNVRTGKWKSIGNSPFFARCG--AALLLTGNNIFSINGELKPG  316 (323)
T ss_pred             ccCcCceEEEEECCCCeeeEcccccccccCc--hheEEECCEEEEEeccccCC
Confidence            112457899999 788999999887 45554  55689999999999986554

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=8.6e-37  Score=297.81  Aligned_cols=210  Identities=18%  Similarity=0.323  Sum_probs=181.8

Q ss_pred             EEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEE
Q 016413          124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD  203 (390)
Q Consensus       124 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd  203 (390)
                      ++.+++.||++||.+... ..+++++|||.+++|..+++|+.  +|..+++++++++||++||.++      .+.+++||
T Consensus       267 ~~~~~~~lyviGG~~~~~-~~~~v~~Ydp~~~~W~~~~~m~~--~r~~~~~v~~~~~iYviGG~~~------~~sve~yd  337 (480)
T PHA02790        267 STHVGEVVYLIGGWMNNE-IHNNAIAVNYISNNWIPIPPMNS--PRLYASGVPANNKLYVVGGLPN------PTSVERWF  337 (480)
T ss_pred             eEEECCEEEEEcCCCCCC-cCCeEEEEECCCCEEEECCCCCc--hhhcceEEEECCEEEEECCcCC------CCceEEEE
Confidence            455899999999986543 46789999999999999999987  5778888999999999999753      25689999


Q ss_pred             CCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECC
Q 016413          204 SETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND  283 (390)
Q Consensus       204 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~  283 (390)
                      +.+++|+.+++||.+|..+++++++++|||+||....  ...+++||       |.+++|+.+++||.+|..++++++++
T Consensus       338 p~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~yd-------p~~~~W~~~~~m~~~r~~~~~~~~~~  408 (480)
T PHA02790        338 HGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLL-------PNHDQWQFGPSTYYPHYKSCALVFGR  408 (480)
T ss_pred             CCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEe-------CCCCEEEeCCCCCCccccceEEEECC
Confidence            9999999999999999999999999999999997543  24455665       89999999999999999899999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCc
Q 016413          284 RLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPM  362 (390)
Q Consensus       284 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~  362 (390)
                      +||++||.                         +++|| .+++|+.+++|+.||..+  ++++++|+||++||.++..  
T Consensus       409 ~IYv~GG~-------------------------~e~ydp~~~~W~~~~~m~~~r~~~--~~~v~~~~IYviGG~~~~~--  459 (480)
T PHA02790        409 RLFLVGRN-------------------------AEFYCESSNTWTLIDDPIYPRDNP--ELIIVDNKLLLIGGFYRGS--  459 (480)
T ss_pred             EEEEECCc-------------------------eEEecCCCCcEeEcCCCCCCcccc--EEEEECCEEEEECCcCCCc--
Confidence            99999983                         57799 788999999999988765  4589999999999987543  


Q ss_pred             ceeeEEeeeEEEeecCccceeec
Q 016413          363 TKRMILVGEVFQFHLDSLVIIYH  385 (390)
Q Consensus       363 ~~~~~~~~~v~~yd~~~~~W~~v  385 (390)
                           ..+.+++|||++++|+..
T Consensus       460 -----~~~~ve~Yd~~~~~W~~~  477 (480)
T PHA02790        460 -----YIDTIEVYNNRTYSWNIW  477 (480)
T ss_pred             -----ccceEEEEECCCCeEEec
Confidence                 456899999999999864

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=3.3e-36  Score=283.65  Aligned_cols=250  Identities=18%  Similarity=0.271  Sum_probs=190.8

Q ss_pred             CCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeC--CCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeC
Q 016413          112 MPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNF--TDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYG  189 (390)
Q Consensus       112 ~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~--~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~  189 (390)
                      +++||.+|..+++++++++|||+||...     +++++||+  .+++|..+++||.. +|..+++++++++|||+||...
T Consensus         1 ~~~lp~~~~~~~~~~~~~~vyv~GG~~~-----~~~~~~d~~~~~~~W~~l~~~p~~-~R~~~~~~~~~~~iYv~GG~~~   74 (346)
T TIGR03547         1 LPDLPVGFKNGTGAIIGDKVYVGLGSAG-----TSWYKLDLKKPSKGWQKIADFPGG-PRNQAVAAAIDGKLYVFGGIGK   74 (346)
T ss_pred             CCCCCccccCceEEEECCEEEEEccccC-----CeeEEEECCCCCCCceECCCCCCC-CcccceEEEECCEEEEEeCCCC
Confidence            4789999999999899999999999743     56899996  67899999999842 5888999999999999999854


Q ss_pred             CC---CCCCCceEEEEECCCCCeEeCC-CCCCCCCCceEE-EECCEEEEEccCCCCC-----------------------
Q 016413          190 PQ---CRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQ-LWRGRLHVMGGSKENR-----------------------  241 (390)
Q Consensus       190 ~~---~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~-~~~~~iyv~GG~~~~~-----------------------  241 (390)
                      ..   ....++++++||+.+++|+.++ ++|.+|.+++++ +++++||++||.....                       
T Consensus        75 ~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (346)
T TIGR03547        75 ANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIA  154 (346)
T ss_pred             CCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHH
Confidence            22   1124689999999999999997 567778778776 7899999999986321                       


Q ss_pred             -----------CCCCcceEEeeeeccccccCCeEEccCCCC-CCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccc
Q 016413          242 -----------HTPGLEHWSIAVKDGKALEKAWRTEIPIPR-GGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRR  309 (390)
Q Consensus       242 -----------~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~  309 (390)
                                 ..+.+++|       ||.+++|+.+++||. +|..+++++++++|||+||.....              
T Consensus       155 ~~~~~~~~~~~~~~~v~~Y-------Dp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~--------------  213 (346)
T TIGR03547       155 AYFSQPPEDYFWNKNVLSY-------DPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPG--------------  213 (346)
T ss_pred             HHhCCChhHcCccceEEEE-------ECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCC--------------
Confidence                       01233444       489999999999985 678888899999999999975321              


Q ss_pred             cceecCcEEeeC---CCCCeEECCCCCCCCCc-----ceeEEEEECCEEEEEcCCCCCCCc--------c-e-eeEEeee
Q 016413          310 HEVVYGDVYMLD---DEMKWKVLPPMPKPNSH-----IECAWVIVNNSIIITGGTTEKHPM--------T-K-RMILVGE  371 (390)
Q Consensus       310 ~~~~~~~v~~yd---~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~l~v~GG~~~~~~~--------~-~-~~~~~~~  371 (390)
                        ....+++.||   .+++|+.+++||.||..     ..+++++++++|||+||.+.....        . . ....+..
T Consensus       214 --~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (346)
T TIGR03547       214 --LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWS  291 (346)
T ss_pred             --ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeE
Confidence              1123455554   35699999999987632     244467899999999998632110        0 0 0002346


Q ss_pred             EEEeecCccceeeccCCCC
Q 016413          372 VFQFHLDSLVIIYHYRPPK  390 (390)
Q Consensus       372 v~~yd~~~~~W~~v~~~P~  390 (390)
                      +++||+++++|+.++.+|.
T Consensus       292 ~e~yd~~~~~W~~~~~lp~  310 (346)
T TIGR03547       292 SEVYALDNGKWSKVGKLPQ  310 (346)
T ss_pred             eeEEEecCCcccccCCCCC
Confidence            8999999999999999884

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=9.4e-37  Score=257.77  Aligned_cols=284  Identities=18%  Similarity=0.270  Sum_probs=217.9

Q ss_pred             HHHHHHhhccEEEEecCCCCCCCccc--cceeeeeccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccc
Q 016413           24 GLLGAALIADFMWASSSSSFSSSSAH--LSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFAD  101 (390)
Q Consensus        24 ~~~~~~~~~~~l~~~GG~~~~~~~~~--~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~  101 (390)
                      .-|+++.++++||.|||+-.|+.-..  .=+++.++..+-+|..+|+--..                        ..+. 
T Consensus        15 VNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~k------------------------a~i~-   69 (392)
T KOG4693|consen   15 VNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITK------------------------ATIE-   69 (392)
T ss_pred             ccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCccccc------------------------cccc-
Confidence            35899999999999999733311111  12577788788888888772111                        0110 


Q ss_pred             cccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCC-CCCCCCcceEEEEeCCE
Q 016413          102 LPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-PKDMAHSHLGVVSDGRY  180 (390)
Q Consensus       102 ~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l-~~~~~r~~~~~~~~~~~  180 (390)
                              .+.+..|..|.+|+++.+++++||.||++..+...+-+++|||++++|....-- -.|.+|.+|+++++++.
T Consensus        70 --------~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~  141 (392)
T KOG4693|consen   70 --------SPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQ  141 (392)
T ss_pred             --------CCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcE
Confidence                    122346888999999999999999999998888888999999999999874321 11337999999999999


Q ss_pred             EEEEeceeCCCCCCCCceEEEEECCCCCeEeCC---CCCCCCCCceEEEECCEEEEEccCCCCC--CCCCcceEEeeeec
Q 016413          181 IYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSKENR--HTPGLEHWSIAVKD  255 (390)
Q Consensus       181 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~~~~~~  255 (390)
                      +|||||+..... .-.+++..+|..+.+|+.+.   ..|.=|..|+++++++.+|||||.....  +-...+.|.-++..
T Consensus       142 MyiFGGye~~a~-~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~  220 (392)
T KOG4693|consen  142 MYIFGGYEEDAQ-RFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMA  220 (392)
T ss_pred             EEEecChHHHHH-hhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEE
Confidence            999999865432 34689999999999999996   3455688999999999999999986532  33334455444445


Q ss_pred             cccccCCeEEccC---CCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECC-
Q 016413          256 GKALEKAWRTEIP---IPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP-  330 (390)
Q Consensus       256 ~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~-  330 (390)
                      +|..+..|...++   .|.+|.+|++.+++++||+|||+++.-               +.-.+++|.|| .+..|+.|. 
T Consensus       221 ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~l---------------n~HfndLy~FdP~t~~W~~I~~  285 (392)
T KOG4693|consen  221 LDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTL---------------NVHFNDLYCFDPKTSMWSVISV  285 (392)
T ss_pred             EeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhh---------------hhhhcceeecccccchheeeec
Confidence            5579999998754   578899999999999999999998742               24567899999 677999986 


Q ss_pred             --CCCCCCCcceeEEEEECCEEEEEcCCCC
Q 016413          331 --PMPKPNSHIECAWVIVNNSIIITGGTTE  358 (390)
Q Consensus       331 --~~~~~~~~~~~~~~~~~~~l~v~GG~~~  358 (390)
                        .-|.+|.+.  ++++.++|+|+|||...
T Consensus       286 ~Gk~P~aRRRq--C~~v~g~kv~LFGGTsP  313 (392)
T KOG4693|consen  286 RGKYPSARRRQ--CSVVSGGKVYLFGGTSP  313 (392)
T ss_pred             cCCCCCcccce--eEEEECCEEEEecCCCC
Confidence              456777765  34899999999999765

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=7.3e-36  Score=297.15  Aligned_cols=272  Identities=16%  Similarity=0.278  Sum_probs=213.5

Q ss_pred             ccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCC-----CchhHHHhhhcccccccCC
Q 016413           32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKK-----GQDAERFLSATFADLPAPD  106 (390)
Q Consensus        32 ~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  106 (390)
                      ...+++.||. +    .......+|++.++.|..++.++.    +..++++++++.     |.........+++.||+.+
T Consensus       250 ~~~~~~~~g~-~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~  320 (534)
T PHA03098        250 GSIIYIHITM-S----IFTYNYITNYSPLSEINTIIDIHY----VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKT  320 (534)
T ss_pred             CcceEeeccc-c----hhhceeeecchhhhhcccccCccc----cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCC
Confidence            3456666665 2    123456678888889998876542    333455555544     2222222334899999999


Q ss_pred             CCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEec
Q 016413          107 LEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSG  186 (390)
Q Consensus       107 ~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG  186 (390)
                      ++|..+++|+.+|..+++++++++|||+||.+.. ..++++++||+.+++|+.+++||.  +|..+++++.+++|||+||
T Consensus       321 ~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~--~r~~~~~~~~~~~iYv~GG  397 (534)
T PHA03098        321 KSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIF--PRYNPCVVNVNNLIYVIGG  397 (534)
T ss_pred             CeeeECCCCCcccccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCc--CCccceEEEECCEEEEECC
Confidence            9999999999999999999999999999998743 346889999999999999999987  5889999999999999999


Q ss_pred             eeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEc
Q 016413          187 QYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE  266 (390)
Q Consensus       187 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~  266 (390)
                      .....  ..++++++||+.+++|+.++++|.+|.++++++++++|||+||.......   ..++ .++.||+.+++|+.+
T Consensus       398 ~~~~~--~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~---~~~~-~v~~yd~~~~~W~~~  471 (534)
T PHA03098        398 ISKND--ELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNI---KVYN-IVESYNPVTNKWTEL  471 (534)
T ss_pred             cCCCC--cccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCC---cccc-eEEEecCCCCceeeC
Confidence            75443  23789999999999999999999999999999999999999997643211   0111 133444899999999


Q ss_pred             cCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCc
Q 016413          267 IPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSH  338 (390)
Q Consensus       267 ~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~  338 (390)
                      +++|.+|..+++++++++|||+||.+...                 ..+++++|| .+++|+.++.+|.....
T Consensus       472 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~~~~  527 (534)
T PHA03098        472 SSLNFPRINASLCIFNNKIYVVGGDKYEY-----------------YINEIEVYDDKTNTWTLFCKFPKVIGS  527 (534)
T ss_pred             CCCCcccccceEEEECCEEEEEcCCcCCc-----------------ccceeEEEeCCCCEEEecCCCcccccc
Confidence            99999898889999999999999987532                 356799999 78899999987765443

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=3.4e-35  Score=273.94  Aligned_cols=242  Identities=17%  Similarity=0.207  Sum_probs=186.5

Q ss_pred             cCCCceEEEECCEEEEEecCCCCCC---------CCCeEEEEe-CCCC-ceeecCCCCCCCCCcceEEEEeCCEEEEEec
Q 016413          118 PRLDGAAIQIKNLFYVFAGYGSLDY---------VHSHVDVYN-FTDN-KWVDRFDMPKDMAHSHLGVVSDGRYIYIVSG  186 (390)
Q Consensus       118 ~R~~~~~~~~~~~lyv~GG~~~~~~---------~~~~v~~yd-~~~~-~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG  186 (390)
                      -+.++.++++++.|||+||.+....         ..+++++|+ +..+ +|..+++||.  +|..+++++++++||++||
T Consensus         3 ~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~--~r~~~~~~~~~~~lyviGG   80 (323)
T TIGR03548         3 GVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPY--EAAYGASVSVENGIYYIGG   80 (323)
T ss_pred             ceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCc--cccceEEEEECCEEEEEcC
Confidence            3567888999999999999865431         335788885 3322 7999999987  4666777888999999999


Q ss_pred             eeCCCCCCCCceEEEEECCCCCe----EeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCC
Q 016413          187 QYGPQCRGPTSRTFVLDSETRKW----DSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKA  262 (390)
Q Consensus       187 ~~~~~~~~~~~~v~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (390)
                      .++..   .++++++||+.+++|    +.+++||.+|..|++++++++|||+||.......+++++||       +.+++
T Consensus        81 ~~~~~---~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd-------~~~~~  150 (323)
T TIGR03548        81 SNSSE---RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFN-------LETQE  150 (323)
T ss_pred             CCCCC---CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEc-------CCCCC
Confidence            87543   378999999999988    78899999999999999999999999975444445555555       78999


Q ss_pred             eEEccCCCC-CCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCC---CCCC
Q 016413          263 WRTEIPIPR-GGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMP---KPNS  337 (390)
Q Consensus       263 W~~~~~~p~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~---~~~~  337 (390)
                      |+.++++|. +|..+++++++++|||+||.++..                  ..++++|| .+++|+.+++|+   .|+.
T Consensus       151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~------------------~~~~~~yd~~~~~W~~~~~~~~~~~p~~  212 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA------------------YTDGYKYSPKKNQWQKVADPTTDSEPIS  212 (323)
T ss_pred             eeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc------------------ccceEEEecCCCeeEECCCCCCCCCcee
Confidence            999998874 787788889999999999986431                  24689999 788999998764   4554


Q ss_pred             ccee-EEEEECCEEEEEcCCCCCCCc-------------------------ceeeEEeeeEEEeecCccceeeccCCC
Q 016413          338 HIEC-AWVIVNNSIIITGGTTEKHPM-------------------------TKRMILVGEVFQFHLDSLVIIYHYRPP  389 (390)
Q Consensus       338 ~~~~-~~~~~~~~l~v~GG~~~~~~~-------------------------~~~~~~~~~v~~yd~~~~~W~~v~~~P  389 (390)
                      ...+ +++..+++|||+||.+.....                         .......+++++||+++++|+.++.+|
T Consensus       213 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p  290 (323)
T TIGR03548       213 LLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP  290 (323)
T ss_pred             ccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc
Confidence            4333 345567999999998753100                         000012367999999999999998776

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=1.3e-35  Score=289.62  Aligned_cols=189  Identities=18%  Similarity=0.347  Sum_probs=166.1

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD  177 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~  177 (390)
                      .++.||+.+++|..+++|+.+|..+++++++++||++||.+..    +++++|||.+++|..+++||.  +|..++++++
T Consensus       288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp~~n~W~~~~~l~~--~r~~~~~~~~  361 (480)
T PHA02790        288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFHGDAAWVNMPSLLK--PRCNPAVASI  361 (480)
T ss_pred             eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC----CceEEEECCCCeEEECCCCCC--CCcccEEEEE
Confidence            6777888888899999999999999999999999999998642    569999999999999999997  5888999999


Q ss_pred             CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccc
Q 016413          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGK  257 (390)
Q Consensus       178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~  257 (390)
                      +++||++||.++.     .+.+++|||.+++|+.+++|+.+|..+++++++++|||+||.        +++|+       
T Consensus       362 ~g~IYviGG~~~~-----~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~--------~e~yd-------  421 (480)
T PHA02790        362 NNVIYVIGGHSET-----DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN--------AEFYC-------  421 (480)
T ss_pred             CCEEEEecCcCCC-----CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc--------eEEec-------
Confidence            9999999997532     367999999999999999999999999999999999999983        34555       


Q ss_pred             cccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEEC
Q 016413          258 ALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVL  329 (390)
Q Consensus       258 ~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~  329 (390)
                      |.+++|+.+++||.+|..+++++++++||++||.++..                 .++.+++|| .+++|+..
T Consensus       422 p~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~-----------------~~~~ve~Yd~~~~~W~~~  477 (480)
T PHA02790        422 ESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGS-----------------YIDTIEVYNNRTYSWNIW  477 (480)
T ss_pred             CCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCc-----------------ccceEEEEECCCCeEEec
Confidence            78999999999999999999999999999999986431                 246799999 78899875

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=3.5e-35  Score=278.83  Aligned_cols=276  Identities=18%  Similarity=0.280  Sum_probs=202.3

Q ss_pred             HHHHHHHHHhhccEEEEecCCCCCCCccccceeeeeccC--CCceEeecCCCC-CccccccceEEEecCC-----Cchh-
Q 016413           21 CVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALE--KSGVVVIPHVNA-TKIDRQRESVAVIDKK-----GQDA-   91 (390)
Q Consensus        21 ~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~~d~~--~~~W~~l~~~~~-~p~~r~~~~~~~~~~~-----~~~~-   91 (390)
                      ..+..++++++++.||++||. ..      +.++.||++  +++|..+++++. +   |..++++++++.     |... 
T Consensus        27 ~~~~~~~~~~~~~~iyv~gG~-~~------~~~~~~d~~~~~~~W~~l~~~p~~~---r~~~~~v~~~~~IYV~GG~~~~   96 (376)
T PRK14131         27 VPFKNGTGAIDNNTVYVGLGS-AG------TSWYKLDLNAPSKGWTKIAAFPGGP---REQAVAAFIDGKLYVFGGIGKT   96 (376)
T ss_pred             cCccCCeEEEECCEEEEEeCC-CC------CeEEEEECCCCCCCeEECCcCCCCC---cccceEEEECCEEEEEcCCCCC
Confidence            344556788899999999998 22      247788875  578999998864 4   878877777665     2111 


Q ss_pred             -H---HHhhhcccccccCCCCeEECCC-CCCcCCCceEEE-ECCEEEEEecCCCCC------------------------
Q 016413           92 -E---RFLSATFADLPAPDLEWEQMPS-APVPRLDGAAIQ-IKNLFYVFAGYGSLD------------------------  141 (390)
Q Consensus        92 -~---~~~~~~~~~~~~~~~~W~~~~~-~~~~R~~~~~~~-~~~~lyv~GG~~~~~------------------------  141 (390)
                       .   .....++++||+.+++|+.+++ +|.+|.+|++++ .+++|||+||.+...                        
T Consensus        97 ~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~  176 (376)
T PRK14131         97 NSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDA  176 (376)
T ss_pred             CCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHH
Confidence             0   1123489999999999999986 466777787776 799999999975310                        


Q ss_pred             ---------CCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceE--EEEECCCCCeE
Q 016413          142 ---------YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRT--FVLDSETRKWD  210 (390)
Q Consensus       142 ---------~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v--~~yd~~~~~W~  210 (390)
                               ..++++++||+.+++|+.++++|.+ +|.+++++.++++|||+||......  ...++  +.||+++++|+
T Consensus       177 ~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~-~~~~~a~v~~~~~iYv~GG~~~~~~--~~~~~~~~~~~~~~~~W~  253 (376)
T PRK14131        177 YFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFL-GTAGSAVVIKGNKLWLINGEIKPGL--RTDAVKQGKFTGNNLKWQ  253 (376)
T ss_pred             HhcCChhhcCcCceEEEEECCCCeeeECCcCCCC-CCCcceEEEECCEEEEEeeeECCCc--CChhheEEEecCCCccee
Confidence                     1247899999999999999988853 4778889999999999999765432  13333  45688999999


Q ss_pred             eCCCCCCCCCC--------ceEEEECCEEEEEccCCCCCC----------C--CCcceEEeeeeccccccCCeEEccCCC
Q 016413          211 SIPPLPSPRYS--------PATQLWRGRLHVMGGSKENRH----------T--PGLEHWSIAVKDGKALEKAWRTEIPIP  270 (390)
Q Consensus       211 ~~~~~p~~r~~--------~~~~~~~~~iyv~GG~~~~~~----------~--~~~~~~~~~~~~~~~~~~~W~~~~~~p  270 (390)
                      .+++||.+|..        +.+++++++|||+||......          .  .....+..++|+  +.+++|+.+++||
T Consensus       254 ~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd--~~~~~W~~~~~lp  331 (376)
T PRK14131        254 KLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYA--LVNGKWQKVGELP  331 (376)
T ss_pred             ecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEE--ecCCcccccCcCC
Confidence            99999887642        225678999999999753210          0  000112222222  6899999999999


Q ss_pred             CCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeE
Q 016413          271 RGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWK  327 (390)
Q Consensus       271 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~  327 (390)
                      .+|..+++++++++|||+||.....                ..+++|++|+ .++++.
T Consensus       332 ~~r~~~~av~~~~~iyv~GG~~~~~----------------~~~~~v~~~~~~~~~~~  373 (376)
T PRK14131        332 QGLAYGVSVSWNNGVLLIGGETAGG----------------KAVSDVTLLSWDGKKLT  373 (376)
T ss_pred             CCccceEEEEeCCEEEEEcCCCCCC----------------cEeeeEEEEEEcCCEEE
Confidence            9999889999999999999975431                2467899998 555554

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=5.9e-33  Score=234.81  Aligned_cols=257  Identities=19%  Similarity=0.323  Sum_probs=202.4

Q ss_pred             CeEECCCCCCcCCCceEEEECCEEEEEecCCCCCC----CCCeEEEEeCCCCceeecCC--------CC---CCCCCcce
Q 016413          108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDY----VHSHVDVYNFTDNKWVDRFD--------MP---KDMAHSHL  172 (390)
Q Consensus       108 ~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~----~~~~v~~yd~~~~~W~~~~~--------l~---~~~~r~~~  172 (390)
                      +|+.--.--..|-.|+++.++++||-|||+...+.    ..-+|.++|..+-+|+.+++        .+   .|.-|++|
T Consensus         3 ~WTVHLeGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGH   82 (392)
T KOG4693|consen    3 TWTVHLEGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGH   82 (392)
T ss_pred             eEEEEecCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCc
Confidence            45443222335779999999999999999864331    12369999999999999875        11   14469999


Q ss_pred             EEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC---CCCCCCCCceEEEECCEEEEEccCCC--CCCCCCcc
Q 016413          173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSKE--NRHTPGLE  247 (390)
Q Consensus       173 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~  247 (390)
                      +++..++++||.||.+...  ...+.++.||++++.|.+..   -+|.+|.+|+++++++.+|||||+..  +++.+++.
T Consensus        83 tvV~y~d~~yvWGGRND~e--gaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h  160 (392)
T KOG4693|consen   83 TVVEYQDKAYVWGGRNDDE--GACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTH  160 (392)
T ss_pred             eEEEEcceEEEEcCccCcc--cccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccce
Confidence            9999999999999988755  45899999999999998875   57899999999999999999999854  34555555


Q ss_pred             eEEeeeeccccccCCeEEcc---CCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CC
Q 016413          248 HWSIAVKDGKALEKAWRTEI---PIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DE  323 (390)
Q Consensus       248 ~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~  323 (390)
                      .+|       ..+.+|+.+.   ..|+-|-.|++.++++.+|||||......        .-...++++.++|..+| .+
T Consensus       161 ~ld-------~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~g--------pfHs~~e~Yc~~i~~ld~~T  225 (392)
T KOG4693|consen  161 VLD-------FATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESG--------PFHSIHEQYCDTIMALDLAT  225 (392)
T ss_pred             eEe-------ccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCC--------CccchhhhhcceeEEEeccc
Confidence            555       5899999984   46788888999999999999999865431        12234567889999999 89


Q ss_pred             CCeEECCCCC-CCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeecc
Q 016413          324 MKWKVLPPMP-KPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHY  386 (390)
Q Consensus       324 ~~W~~~~~~~-~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~  386 (390)
                      ..|...++-+ .|..+.++++.+.+++||+|||+++.-..     -++|+|+|||.+..|+.+.
T Consensus       226 ~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~-----HfndLy~FdP~t~~W~~I~  284 (392)
T KOG4693|consen  226 GAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNV-----HFNDLYCFDPKTSMWSVIS  284 (392)
T ss_pred             cccccCCCCCcCCCcccccceEEEcceEEEecccchhhhh-----hhcceeecccccchheeee
Confidence            9999876422 33334456779999999999999987653     5789999999999999873

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.97  E-value=4.2e-29  Score=242.58  Aligned_cols=269  Identities=18%  Similarity=0.247  Sum_probs=211.6

Q ss_pred             HHHHHHHHHHHhhccEEEEecCCCCCCCccccce--eeeeccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhh
Q 016413           19 FLCVLGLLGAALIADFMWASSSSSFSSSSAHLSV--ASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLS   96 (390)
Q Consensus        19 ~~~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~--~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~   96 (390)
                      .+..+..|+++++++.+|++||...   ...+..  ++.+|..+..|........                         
T Consensus        57 ~p~~R~~hs~~~~~~~~~vfGG~~~---~~~~~~~dl~~~d~~~~~w~~~~~~g~-------------------------  108 (482)
T KOG0379|consen   57 GPIPRAGHSAVLIGNKLYVFGGYGS---GDRLTDLDLYVLDLESQLWTKPAATGD-------------------------  108 (482)
T ss_pred             CcchhhccceeEECCEEEEECCCCC---CCccccceeEEeecCCcccccccccCC-------------------------
Confidence            4588999999999999999999833   333333  6666655544444433222                         


Q ss_pred             hcccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCC-CCCCcceEEE
Q 016413           97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHSHLGVV  175 (390)
Q Consensus        97 ~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~-~~~r~~~~~~  175 (390)
                                        .|.+|.+|.++.++++||+|||.+.....+++++.||+.+++|..+.+... |.+|.+|+++
T Consensus       109 ------------------~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~  170 (482)
T KOG0379|consen  109 ------------------EPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSAT  170 (482)
T ss_pred             ------------------CCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEE
Confidence                              357899999999999999999998655557899999999999999876555 6689999999


Q ss_pred             EeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC---CCCCCCCCceEEEECCEEEEEccCC-CCCCCCCcceEEe
Q 016413          176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSK-ENRHTPGLEHWSI  251 (390)
Q Consensus       176 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~~~~  251 (390)
                      +.+++||||||.+....  ..+++++||+++.+|.++.   +.|.||++|++++++++++|+||.. ...+.+++..+|+
T Consensus       171 ~~g~~l~vfGG~~~~~~--~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl  248 (482)
T KOG0379|consen  171 VVGTKLVVFGGIGGTGD--SLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDL  248 (482)
T ss_pred             EECCEEEEECCccCccc--ceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeec
Confidence            99999999999987652  4899999999999999986   6788999999999999999999988 6677888888885


Q ss_pred             eeeccccccCCeEEcc---CCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeE
Q 016413          252 AVKDGKALEKAWRTEI---PIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWK  327 (390)
Q Consensus       252 ~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~  327 (390)
                             .+.+|..+.   ..|.+|+.|+.+..+++++|+||.....               ...++++|.|| ++..|.
T Consensus       249 -------~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~---------------~~~l~~~~~l~~~~~~w~  306 (482)
T KOG0379|consen  249 -------STWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPK---------------QEPLGDLYGLDLETLVWS  306 (482)
T ss_pred             -------ccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccc---------------ccccccccccccccccee
Confidence                   689999764   4789999999999999999999986531               02578899999 888999


Q ss_pred             ECCC----CCCCCCcceeEEEEECC--EEEEEcCCC
Q 016413          328 VLPP----MPKPNSHIECAWVIVNN--SIIITGGTT  357 (390)
Q Consensus       328 ~~~~----~~~~~~~~~~~~~~~~~--~l~v~GG~~  357 (390)
                      .+..    .|.|+..+....+...+  ...++||..
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (482)
T KOG0379|consen  307 KVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQ  342 (482)
T ss_pred             eeeccccccccccccccceeeccCCccceeeecCcc
Confidence            8763    35666655443333222  344455543

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.97  E-value=1.1e-28  Score=239.58  Aligned_cols=244  Identities=24%  Similarity=0.430  Sum_probs=202.0

Q ss_pred             CCCCcCCCceEEEECCEEEEEecCCCCCCCCC-eEEEEeCCCCceeecCC-CCCCCCCcceEEEEeCCEEEEEeceeCCC
Q 016413          114 SAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHS-HVDVYNFTDNKWVDRFD-MPKDMAHSHLGVVSDGRYIYIVSGQYGPQ  191 (390)
Q Consensus       114 ~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~-~v~~yd~~~~~W~~~~~-l~~~~~r~~~~~~~~~~~iyv~GG~~~~~  191 (390)
                      ..|.+|..|+++.+++++|||||........+ +++++|..+..|..... -..|.+|.+|.++.++++||+|||.+...
T Consensus        56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~  135 (482)
T KOG0379|consen   56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY  135 (482)
T ss_pred             CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence            36788999999999999999999876654333 69999999999987543 23345799999999999999999988633


Q ss_pred             CCCCCceEEEEECCCCCeEeCC---CCCCCCCCceEEEECCEEEEEccCCCCC-CCCCcceEEeeeeccccccCCeEEc-
Q 016413          192 CRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSKENR-HTPGLEHWSIAVKDGKALEKAWRTE-  266 (390)
Q Consensus       192 ~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~-  266 (390)
                        ..+++++.||+.+.+|+.+.   ..|.+|.+|++++++++||||||..... ..+++.+||       +++.+|.++ 
T Consensus       136 --~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d-------~~~~~W~~~~  206 (482)
T KOG0379|consen  136 --RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYD-------LETSTWSELD  206 (482)
T ss_pred             --CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeec-------cccccceecc
Confidence              44899999999999999886   4689999999999999999999987655 566666666       589999997 


Q ss_pred             --cCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECC---CCCCCCCcce
Q 016413          267 --IPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP---PMPKPNSHIE  340 (390)
Q Consensus       267 --~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~---~~~~~~~~~~  340 (390)
                        .+.|.+|.+|++++++++++|+||.+..                +.+++|+|.+| .+.+|+.+.   .+|.||..| 
T Consensus       207 ~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~----------------~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h-  269 (482)
T KOG0379|consen  207 TQGEAPSPRYGHAMVVVGNKLLVFGGGDDG----------------DVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGH-  269 (482)
T ss_pred             cCCCCCCCCCCceEEEECCeEEEEeccccC----------------CceecceEeeecccceeeeccccCCCCCCccee-
Confidence              3578899999999999999999998732                25899999999 788999765   577888765 


Q ss_pred             eEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeeccCCC
Q 016413          341 CAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYRPP  389 (390)
Q Consensus       341 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~P  389 (390)
                       .++..+.+++++||......     ..+.++|.||.+++.|..+..++
T Consensus       270 -~~~~~~~~~~l~gG~~~~~~-----~~l~~~~~l~~~~~~w~~~~~~~  312 (482)
T KOG0379|consen  270 -SLTVSGDHLLLFGGGTDPKQ-----EPLGDLYGLDLETLVWSKVESVG  312 (482)
T ss_pred             -eeEEECCEEEEEcCCccccc-----ccccccccccccccceeeeeccc
Confidence             44699999999999877521     14679999999999999886543

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.96  E-value=6.6e-29  Score=221.92  Aligned_cols=257  Identities=19%  Similarity=0.296  Sum_probs=195.7

Q ss_pred             CCCCCcCCCceEEEE--CCEEEEEecC--CCCC-CCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeC-CEEEEEec
Q 016413          113 PSAPVPRLDGAAIQI--KNLFYVFAGY--GSLD-YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDG-RYIYIVSG  186 (390)
Q Consensus       113 ~~~~~~R~~~~~~~~--~~~lyv~GG~--~~~~-~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~-~~iyv~GG  186 (390)
                      .+.|.||.++++++.  .+.|++|||.  ++.. .+.++++.||..+++|..+..-..|.+|+.|++|++- +.+|+|||
T Consensus        61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG  140 (521)
T KOG1230|consen   61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG  140 (521)
T ss_pred             CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence            457899999998876  4689999995  3332 3568999999999999998665555679998888764 89999999


Q ss_pred             eeCCCC---CCCCceEEEEECCCCCeEeCC--CCCCCCCCceEEEECCEEEEEccCCCC----CCCCCcceEEeeeeccc
Q 016413          187 QYGPQC---RGPTSRTFVLDSETRKWDSIP--PLPSPRYSPATQLWRGRLHVMGGSKEN----RHTPGLEHWSIAVKDGK  257 (390)
Q Consensus       187 ~~~~~~---~~~~~~v~~yd~~~~~W~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~~~~~~~~~  257 (390)
                      .-....   ..-..++|.||..+++|+++.  .-|.||++|.+++..++|++|||+...    .|.+++.+|+       
T Consensus       141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~Fd-------  213 (521)
T KOG1230|consen  141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFD-------  213 (521)
T ss_pred             ccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEe-------
Confidence            754321   123589999999999999986  578999999999999999999998654    2445555555       


Q ss_pred             cccCCeEEccC---CCCCCCceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CC---C--CeE
Q 016413          258 ALEKAWRTEIP---IPRGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DE---M--KWK  327 (390)
Q Consensus       258 ~~~~~W~~~~~---~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~---~--~W~  327 (390)
                      ..+-+|+.+.+   -|.+|+++..++. ++.|||.||+....        ...........+|+|.++ ..   +  +|+
T Consensus       214 LdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~--------~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~  285 (521)
T KOG1230|consen  214 LDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQR--------VKKDVDKGTRHSDMFLLKPEDGREDKWVWT  285 (521)
T ss_pred             ccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhh--------hhhhhhcCceeeeeeeecCCcCCCcceeEe
Confidence            57999999854   4788888888888 99999999987432        111222345778999999 33   1  677


Q ss_pred             ECC---CCCCCCCcceeEEEEECCEEEEEcCCCC--CCCcceeeEEeeeEEEeecCccceeec
Q 016413          328 VLP---PMPKPNSHIECAWVIVNNSIIITGGTTE--KHPMTKRMILVGEVFQFHLDSLVIIYH  385 (390)
Q Consensus       328 ~~~---~~~~~~~~~~~~~~~~~~~l~v~GG~~~--~~~~~~~~~~~~~v~~yd~~~~~W~~v  385 (390)
                      .+.   -.|.||..++++ +.-+++-++|||.-.  ..+....+.++||+|.||+..++|...
T Consensus       286 kvkp~g~kPspRsgfsv~-va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  286 KVKPSGVKPSPRSGFSVA-VAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             eccCCCCCCCCCCceeEE-EecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence            765   467888888764 566779999999643  112223444889999999999999864

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.2e-27  Score=218.71  Aligned_cols=273  Identities=15%  Similarity=0.174  Sum_probs=214.7

Q ss_pred             cCCccccccchhhHHHHHHHHHHHhhccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEec
Q 016413            6 HHNKHTYTKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVID   85 (390)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~   85 (390)
                      .-|||+-...-.-.+..+-.|-++++...|.+|||-++|    +...++.|+..+++|..-..-..-|.+...++.+..+
T Consensus        16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG----iiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdG   91 (830)
T KOG4152|consen   16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG----IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDG   91 (830)
T ss_pred             ccceEEEecccCCCCCccccchheeeeeeEEEecCCccc----chhhhhhhccccceeecchhcCCCCCchhhcceEecC
Confidence            345555444333344788899999999999999998655    7889999999999998876666666668888877766


Q ss_pred             CC-----CchhHHHhhhcccccccCCCCeEECCC-------CCCcCCCceEEEECCEEEEEecCCCC--------CCCCC
Q 016413           86 KK-----GQDAERFLSATFADLPAPDLEWEQMPS-------APVPRLDGAAIQIKNLFYVFAGYGSL--------DYVHS  145 (390)
Q Consensus        86 ~~-----~~~~~~~~~~~~~~~~~~~~~W~~~~~-------~~~~R~~~~~~~~~~~lyv~GG~~~~--------~~~~~  145 (390)
                      ..     |+.....+++++|.+.....+|+++.+       +|.||.+|+..++++|.|+|||...+        .++++
T Consensus        92 trilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLn  171 (830)
T KOG4152|consen   92 TRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLN  171 (830)
T ss_pred             ceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhc
Confidence            55     555566677799999988889998843       67999999999999999999997321        14789


Q ss_pred             eEEEEeCCCC----ceeec-CCCCCCCCCcceEEEEe------CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC-
Q 016413          146 HVDVYNFTDN----KWVDR-FDMPKDMAHSHLGVVSD------GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP-  213 (390)
Q Consensus       146 ~v~~yd~~~~----~W~~~-~~l~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~-  213 (390)
                      |++++++.-.    -|... ..-+.|.+|..|.++..      ..++||+||..+..    +.++|.+|+++..|.+.. 
T Consensus       172 DlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R----LgDLW~Ldl~Tl~W~kp~~  247 (830)
T KOG4152|consen  172 DLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR----LGDLWTLDLDTLTWNKPSL  247 (830)
T ss_pred             ceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc----ccceeEEecceeecccccc
Confidence            9999988744    38763 22223446888888876      45899999998854    899999999999999875 


Q ss_pred             --CCCCCCCCceEEEECCEEEEEccCCC--------------CCCCCCcceEEeeeeccccccCCeEEcc-------CCC
Q 016413          214 --PLPSPRYSPATQLWRGRLHVMGGSKE--------------NRHTPGLEHWSIAVKDGKALEKAWRTEI-------PIP  270 (390)
Q Consensus       214 --~~p~~r~~~~~~~~~~~iyv~GG~~~--------------~~~~~~~~~~~~~~~~~~~~~~~W~~~~-------~~p  270 (390)
                        -.|.||+.|++++++|++|||||+--              -.+.++..+|++       .++.|+.+-       ..|
T Consensus       248 ~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNl-------dt~~W~tl~~d~~ed~tiP  320 (830)
T KOG4152|consen  248 SGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNL-------DTMAWETLLMDTLEDNTIP  320 (830)
T ss_pred             cCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeee-------cchheeeeeeccccccccc
Confidence              46788999999999999999999731              123445555664       689998862       379


Q ss_pred             CCCCceeEEEECCEEEEEcCCCC
Q 016413          271 RGGPHRACFVFNDRLFVVGGQEG  293 (390)
Q Consensus       271 ~~~~~~~~~~~~~~iyv~GG~~~  293 (390)
                      ++|.+|.+++++.+|||.-|.++
T Consensus       321 R~RAGHCAvAigtRlYiWSGRDG  343 (830)
T KOG4152|consen  321 RARAGHCAVAIGTRLYIWSGRDG  343 (830)
T ss_pred             cccccceeEEeccEEEEEeccch
Confidence            99999999999999999999876

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.94  E-value=1.2e-25  Score=201.17  Aligned_cols=256  Identities=19%  Similarity=0.290  Sum_probs=186.3

Q ss_pred             ecCCCCCccccccceEEEecCC------Cc---hh-HHHhhhcccccccCCCCeEEC--CCCCCcCCCceEEEEC-CEEE
Q 016413           66 IPHVNATKIDRQRESVAVIDKK------GQ---DA-ERFLSATFADLPAPDLEWEQM--PSAPVPRLDGAAIQIK-NLFY  132 (390)
Q Consensus        66 l~~~~~~p~~r~~~~~~~~~~~------~~---~~-~~~~~~~~~~~~~~~~~W~~~--~~~~~~R~~~~~~~~~-~~ly  132 (390)
                      +.....+|..|.+....+....      |.   .+ ...+-+++|.||...++|+++  ++.|.||+.|+++++- +.+|
T Consensus        57 ~e~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~  136 (521)
T KOG1230|consen   57 VETSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILW  136 (521)
T ss_pred             eeccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEE
Confidence            3344455666877776654333      11   11 112334899999999999987  4478899999998886 8999


Q ss_pred             EEecCCCCC-----CCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCC-CCCCCCceEEEEECCC
Q 016413          133 VFAGYGSLD-----YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGP-QCRGPTSRTFVLDSET  206 (390)
Q Consensus       133 v~GG~~~~~-----~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~v~~yd~~~  206 (390)
                      +|||.-...     ....++|+||+.+++|+++..-..|.+|++|-+++...+|++|||+... ..+...++|++||+++
T Consensus       137 ~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdt  216 (521)
T KOG1230|consen  137 LFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDT  216 (521)
T ss_pred             EeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccc
Confidence            999974322     2357899999999999999776667789999999999999999999654 3345689999999999


Q ss_pred             CCeEeCCC---CCCCCCCceEEEE-CCEEEEEccCCCCCC-------CCCcceEEeeeeccccccCCeEEccC---CCCC
Q 016413          207 RKWDSIPP---LPSPRYSPATQLW-RGRLHVMGGSKENRH-------TPGLEHWSIAVKDGKALEKAWRTEIP---IPRG  272 (390)
Q Consensus       207 ~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~~~~-------~~~~~~~~~~~~~~~~~~~~W~~~~~---~p~~  272 (390)
                      -+|+++.+   -|.||++|++.+. ++.|||.||++....       ....+.|.+...+.+...-+|+.+.+   -|.+
T Consensus       217 ykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPsp  296 (521)
T KOG1230|consen  217 YKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSP  296 (521)
T ss_pred             eeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCC
Confidence            99999975   4789999999988 999999999864321       12234444432221111256888854   4778


Q ss_pred             CCceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEEC
Q 016413          273 GPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVL  329 (390)
Q Consensus       273 ~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~  329 (390)
                      |.++++++. +++-+.|||...-..        ....-+..+.+++|.|| ..++|...
T Consensus       297 Rsgfsv~va~n~kal~FGGV~D~ee--------eeEsl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  297 RSGFSVAVAKNHKALFFGGVCDLEE--------EEESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             CCceeEEEecCCceEEecceecccc--------cchhhhhhhhhhhhheecccchhhHh
Confidence            888888776 459999999754110        01223357999999999 88899764

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.91  E-value=2.3e-23  Score=190.90  Aligned_cols=289  Identities=15%  Similarity=0.180  Sum_probs=199.2

Q ss_pred             CCCceEeecCCCCC-ccccccceEEEecCC----CchhHHHhhhcccccccCCCCeEEC---CCCCCcCCCceEEEECCE
Q 016413           59 EKSGVVVIPHVNAT-KIDRQRESVAVIDKK----GQDAERFLSATFADLPAPDLEWEQM---PSAPVPRLDGAAIQIKNL  130 (390)
Q Consensus        59 ~~~~W~~l~~~~~~-p~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~W~~~---~~~~~~R~~~~~~~~~~~  130 (390)
                      .--+|.++.....| |..|+.|-++++..-    |......++ +++.||..+++|..-   ...|.+...|..+..+.+
T Consensus        15 ~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiD-ELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtr   93 (830)
T KOG4152|consen   15 NVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIID-ELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTR   93 (830)
T ss_pred             cccceEEEecccCCCCCccccchheeeeeeEEEecCCcccchh-hhhhhccccceeecchhcCCCCCchhhcceEecCce
Confidence            44479887665433 345777766655443    333333344 899999999999753   347777788889999999


Q ss_pred             EEEEecCCCCCCCCCeEEEEeCCCCceeecCCC-----CCCCCCcceEEEEeCCEEEEEeceeCCCC------CCCCceE
Q 016413          131 FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-----PKDMAHSHLGVVSDGRYIYIVSGQYGPQC------RGPTSRT  199 (390)
Q Consensus       131 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l-----~~~~~r~~~~~~~~~~~iyv~GG~~~~~~------~~~~~~v  199 (390)
                      ||+|||..+-..+.++++.+....-.|.++.+-     +.|-+|-+|+.++.+++-|+|||...+..      -..++++
T Consensus        94 ilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDl  173 (830)
T KOG4152|consen   94 ILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDL  173 (830)
T ss_pred             EEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcce
Confidence            999999987777777776666555667776432     22457999999999999999999743221      1347889


Q ss_pred             EEEECCCC----CeEeCC---CCCCCCCCceEEEE------CCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEc
Q 016413          200 FVLDSETR----KWDSIP---PLPSPRYSPATQLW------RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE  266 (390)
Q Consensus       200 ~~yd~~~~----~W~~~~---~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~  266 (390)
                      +..++...    .|+..-   .+|.+|..|.++++      ..++||+||.++-+ +.+.+..|       .++..|++.
T Consensus       174 Y~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R-LgDLW~Ld-------l~Tl~W~kp  245 (830)
T KOG4152|consen  174 YILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR-LGDLWTLD-------LDTLTWNKP  245 (830)
T ss_pred             EEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc-ccceeEEe-------cceeecccc
Confidence            98888744    387763   68999999999988      34899999987643 44444445       478899885


Q ss_pred             c---CCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECC-----CCCCCCC
Q 016413          267 I---PIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP-----PMPKPNS  337 (390)
Q Consensus       267 ~---~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~-----~~~~~~~  337 (390)
                      .   -.|.+|+-|++..+++++|||||.-.--..+  .+ .+..+..=.-.+.+-++| .++.|+.+-     +-..||.
T Consensus       246 ~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~--~~-~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~  322 (830)
T KOG4152|consen  246 SLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDD--VK-VATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRA  322 (830)
T ss_pred             cccCCCCCCcccccceeecceeEEecceeeeeccc--cc-cccccceeeeccceeeeeecchheeeeeeccccccccccc
Confidence            2   2334444569999999999999964321100  00 001111112345566778 788999763     3336666


Q ss_pred             cceeEEEEECCEEEEEcCCCCC
Q 016413          338 HIECAWVIVNNSIIITGGTTEK  359 (390)
Q Consensus       338 ~~~~~~~~~~~~l~v~GG~~~~  359 (390)
                      |.+++++.++.+|||..|.++-
T Consensus       323 RAGHCAvAigtRlYiWSGRDGY  344 (830)
T KOG4152|consen  323 RAGHCAVAIGTRLYIWSGRDGY  344 (830)
T ss_pred             cccceeEEeccEEEEEeccchh
Confidence            6777889999999999998764

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.86  E-value=4.7e-20  Score=163.34  Aligned_cols=267  Identities=19%  Similarity=0.261  Sum_probs=188.0

Q ss_pred             ccccccc--CCCCeEECCCCC-CcCCCceEEEECCEEEEEecCCCCC----CCCCeEEEEeCCCCceeecCCCCCCCCCc
Q 016413           98 TFADLPA--PDLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYGSLD----YVHSHVDVYNFTDNKWVDRFDMPKDMAHS  170 (390)
Q Consensus        98 ~~~~~~~--~~~~W~~~~~~~-~~R~~~~~~~~~~~lyv~GG~~~~~----~~~~~v~~yd~~~~~W~~~~~l~~~~~r~  170 (390)
                      .++..|.  ....|++++..| .+|.+..+++++++||||||.....    ...+++++|||.+|+|+.+.... |+...
T Consensus        59 afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s-P~gl~  137 (381)
T COG3055          59 AFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS-PTGLV  137 (381)
T ss_pred             cceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc-ccccc
Confidence            4444444  446899999977 6799999999999999999985433    35789999999999999986643 23456


Q ss_pred             ceEEEEeCC-EEEEEeceeCCC-------------------------------CCCCCceEEEEECCCCCeEeCCCCC-C
Q 016413          171 HLGVVSDGR-YIYIVSGQYGPQ-------------------------------CRGPTSRTFVLDSETRKWDSIPPLP-S  217 (390)
Q Consensus       171 ~~~~~~~~~-~iyv~GG~~~~~-------------------------------~~~~~~~v~~yd~~~~~W~~~~~~p-~  217 (390)
                      .++++.+++ +||++||.+...                               .+.-...+..|+|+++.|+.+...| .
T Consensus       138 G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~  217 (381)
T COG3055         138 GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFY  217 (381)
T ss_pred             cceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCccc
Confidence            777777776 999999984210                               1123578999999999999999777 4


Q ss_pred             CCCCceEEEECCEEEEEccCCCCC-CCCCcceEEeeeeccccccCCeEEccCCCCCCCc-------eeEEEECCEEEEEc
Q 016413          218 PRYSPATQLWRGRLHVMGGSKENR-HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPH-------RACFVFNDRLFVVG  289 (390)
Q Consensus       218 ~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~-------~~~~~~~~~iyv~G  289 (390)
                      ++++.+.+.-+|++.++-|.-... +...+.++++.     -...+|..++++|.+...       +-.--.++.+.|.|
T Consensus       218 ~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~-----~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~G  292 (381)
T COG3055         218 GNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFG-----GDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAG  292 (381)
T ss_pred             CccCcceeecCCeEEEEcceecCCccccceeEEEec-----cCceeeeeccCCCCCCCCCccccceeccceeCCeEEEec
Confidence            677766666788899998864332 33444555542     356789999776643221       12234578899999


Q ss_pred             CCCCCC--CCCCCCCccccccccceecCcEEeeCCCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeE
Q 016413          290 GQEGDF--MAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMI  367 (390)
Q Consensus       290 G~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~  367 (390)
                      |-+-..  ..-.++..+.+..-...+.++||.+| .+.|+.+..||.++.. ++ .+..+++||++||.+....      
T Consensus       293 GAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d-~g~Wk~~GeLp~~l~Y-G~-s~~~nn~vl~IGGE~~~Gk------  363 (381)
T COG3055         293 GANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD-NGSWKIVGELPQGLAY-GV-SLSYNNKVLLIGGETSGGK------  363 (381)
T ss_pred             CCCChhHHHHHHhcccccccchhhhhhceEEEEc-CCceeeecccCCCccc-eE-EEecCCcEEEEccccCCCe------
Confidence            965322  11122334444444456889999996 7799999999997764 33 4778999999999987765      


Q ss_pred             EeeeEEEeecCc
Q 016413          368 LVGEVFQFHLDS  379 (390)
Q Consensus       368 ~~~~v~~yd~~~  379 (390)
                      ...+++.+....
T Consensus       364 a~~~v~~l~~~g  375 (381)
T COG3055         364 ATTRVYSLSWDG  375 (381)
T ss_pred             eeeeEEEEEEcC
Confidence            455666655443

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.81  E-value=2.3e-18  Score=152.68  Aligned_cols=257  Identities=19%  Similarity=0.264  Sum_probs=184.3

Q ss_pred             EECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCC--CCceeecCCCCCCCCCcceEEEEeCCEEEEEece
Q 016413          110 EQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFT--DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQ  187 (390)
Q Consensus       110 ~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~--~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~  187 (390)
                      ..+|.+|.+-...+.+.+++.+||-=|..+.     +.+..|++  ...|+.++..|-. +|.....++++++||+|||.
T Consensus        28 ~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~-----afy~ldL~~~~k~W~~~a~FpG~-~rnqa~~a~~~~kLyvFgG~  101 (381)
T COG3055          28 GQLPDLPVGFKNGAGALIGDTVYVGLGSAGT-----AFYVLDLKKPGKGWTKIADFPGG-ARNQAVAAVIGGKLYVFGGY  101 (381)
T ss_pred             ccCCCCCccccccccceecceEEEEeccCCc-----cceehhhhcCCCCceEcccCCCc-ccccchheeeCCeEEEeecc
Confidence            4567788887777888889999998664332     24555654  4689999999876 69999999999999999998


Q ss_pred             eCCCC--CCCCceEEEEECCCCCeEeCC-CCCCCCCCceEEEECC-EEEEEccCCCCC----------------------
Q 016413          188 YGPQC--RGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQLWRG-RLHVMGGSKENR----------------------  241 (390)
Q Consensus       188 ~~~~~--~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~-~iyv~GG~~~~~----------------------  241 (390)
                      .....  ....+++++|||++++|+++. ..|....+++++.+++ +||++||.+..-                      
T Consensus       102 Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~  181 (381)
T COG3055         102 GKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII  181 (381)
T ss_pred             ccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence            54432  244699999999999999997 4567778888899988 999999975311                      


Q ss_pred             -----CCCCcceEEeeeeccccccCCeEEccCCCC-CCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecC
Q 016413          242 -----HTPGLEHWSIAVKDGKALEKAWRTEIPIPR-GGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYG  315 (390)
Q Consensus       242 -----~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~  315 (390)
                           .......|+-++..|+|.+++|+.+...|. ++++++.+.-++++.++-|+--..                ..+.
T Consensus       182 ~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpG----------------LRt~  245 (381)
T COG3055         182 AHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPG----------------LRTA  245 (381)
T ss_pred             HHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCC----------------cccc
Confidence                 012334566677888999999999987774 444434445577799998875432                2244


Q ss_pred             cEEeeC-CC--CCeEECCCCCCCCCcc--eeE---EEEECCEEEEEcCCCCCC------------CcceeeEEeeeEEEe
Q 016413          316 DVYMLD-DE--MKWKVLPPMPKPNSHI--ECA---WVIVNNSIIITGGTTEKH------------PMTKRMILVGEVFQF  375 (390)
Q Consensus       316 ~v~~yd-~~--~~W~~~~~~~~~~~~~--~~~---~~~~~~~l~v~GG~~~~~------------~~~~~~~~~~~v~~y  375 (390)
                      .+++++ ..  .+|..++++|.|....  +.+   .-..++.++|.||-.-..            .........++||.+
T Consensus       246 ~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~  325 (381)
T COG3055         246 EVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIF  325 (381)
T ss_pred             ceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEE
Confidence            577777 43  3999999888776533  111   124578899999843211            001112256789999


Q ss_pred             ecCccceeeccCCCC
Q 016413          376 HLDSLVIIYHYRPPK  390 (390)
Q Consensus       376 d~~~~~W~~v~~~P~  390 (390)
                      |  .+.|+.++.+|+
T Consensus       326 d--~g~Wk~~GeLp~  338 (381)
T COG3055         326 D--NGSWKIVGELPQ  338 (381)
T ss_pred             c--CCceeeecccCC
Confidence            9  999999999996

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.42  E-value=9.4e-14  Score=128.05  Aligned_cols=258  Identities=14%  Similarity=0.167  Sum_probs=166.6

Q ss_pred             CCeEECCC----------CCCcCCCceEEEECC--EEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCC-CCCCCcceE
Q 016413          107 LEWEQMPS----------APVPRLDGAAIQIKN--LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP-KDMAHSHLG  173 (390)
Q Consensus       107 ~~W~~~~~----------~~~~R~~~~~~~~~~--~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~-~~~~r~~~~  173 (390)
                      .+|.++++          -|..|.+|.++.-.+  .||+.||+++... +.+.|.|+...+.|..+..-. .|-.|.+|-
T Consensus       239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~-l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR  317 (723)
T KOG2437|consen  239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD-LADFWAYSVKENQWTCINRDTEGPGARSCHR  317 (723)
T ss_pred             ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchh-HHHHHhhcCCcceeEEeecCCCCCcchhhhh
Confidence            47987754          356788999988765  8999999999875 578999999999999875433 355799999


Q ss_pred             EEEeCC--EEEEEeceeCCCC---CCCCceEEEEECCCCCeEeCC------CCCCCCCCceEEEECCE--EEEEccCCCC
Q 016413          174 VVSDGR--YIYIVSGQYGPQC---RGPTSRTFVLDSETRKWDSIP------PLPSPRYSPATQLWRGR--LHVMGGSKEN  240 (390)
Q Consensus       174 ~~~~~~--~iyv~GG~~~~~~---~~~~~~v~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~--iyv~GG~~~~  240 (390)
                      ++..-.  ++|++|-+-+...   ....+++|+||..++.|.-+.      .-|...+.|.+++.+++  |||+||+.-.
T Consensus       318 MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~  397 (723)
T KOG2437|consen  318 MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILT  397 (723)
T ss_pred             hhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeecc
Confidence            998654  9999997744322   133589999999999999886      24667788999999888  9999998643


Q ss_pred             CCCCCcceEEeeeeccccccCCeEEccC----------CCCCCCcee--EEEECCEEEEEcCCCCCCCCCCCCCcccccc
Q 016413          241 RHTPGLEHWSIAVKDGKALEKAWRTEIP----------IPRGGPHRA--CFVFNDRLFVVGGQEGDFMAKPGSPIFKCSR  308 (390)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~W~~~~~----------~p~~~~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  308 (390)
                      .-   -.+|. -+|.|+.....|..+..          ....|.++.  ++.-+..+|++||.....             
T Consensus       398 ~~---e~~f~-GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~-------------  460 (723)
T KOG2437|consen  398 CN---EPQFS-GLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKT-------------  460 (723)
T ss_pred             CC---Ccccc-ceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccce-------------
Confidence            21   11121 13444468888987532          112333333  355577899999976532             


Q ss_pred             ccceecCcEEeeC-CCCC---eE-----ECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCc
Q 016413          309 RHEVVYGDVYMLD-DEMK---WK-----VLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDS  379 (390)
Q Consensus       309 ~~~~~~~~v~~yd-~~~~---W~-----~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~  379 (390)
                          -++-.+.|| ....   =+     .....|.+.......+-.-.+.|.+.-|....... +.....+..|+|++.+
T Consensus       461 ----El~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~-~e~~~rns~wi~~i~~  535 (723)
T KOG2437|consen  461 ----ELNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEK-REENVRNSFWIYDIVR  535 (723)
T ss_pred             ----EEeehhcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccC-ccccccCcEEEEEecc
Confidence                122233342 1110   00     11111222111111112234678887787644321 1222568899999999


Q ss_pred             cceeeccC
Q 016413          380 LVIIYHYR  387 (390)
Q Consensus       380 ~~W~~v~~  387 (390)
                      +.|..+..
T Consensus       536 ~~w~cI~~  543 (723)
T KOG2437|consen  536 NSWSCIYK  543 (723)
T ss_pred             cchhhHhh
Confidence            99987643

>PF13964 Kelch_6: Kelch motif

Probab=99.35  E-value=2.5e-12  Score=84.64  Aligned_cols=49  Identities=29%  Similarity=0.540  Sum_probs=45.0

Q ss_pred             cCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCC
Q 016413          118 PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKD  166 (390)
Q Consensus       118 ~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~  166 (390)
                      ||.+|++++++++|||+||.......++++++||+++++|+++++||.|
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p   49 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP   49 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence            6899999999999999999987555688999999999999999999984

>PF13964 Kelch_6: Kelch motif

Probab=99.34  E-value=3e-12  Score=84.28  Aligned_cols=50  Identities=28%  Similarity=0.530  Sum_probs=45.3

Q ss_pred             CCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCC
Q 016413          168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPR  219 (390)
Q Consensus       168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r  219 (390)
                      +|.++++++.+++|||+||....  ....+++++||+++++|+++++||.+|
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~--~~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNS--GKYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCC--CCccccEEEEcCCCCcEEECCCCCCCC
Confidence            48899999999999999998775  256899999999999999999999987

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.30  E-value=4.8e-13  Score=123.43  Aligned_cols=192  Identities=14%  Similarity=0.151  Sum_probs=137.3

Q ss_pred             CCCceEeecCCC-------CCccccccceEEEecCC-------CchhHHHhhhcccccccCCCCeEECC---CCCCcCCC
Q 016413           59 EKSGVVVIPHVN-------ATKIDRQRESVAVIDKK-------GQDAERFLSATFADLPAPDLEWEQMP---SAPVPRLD  121 (390)
Q Consensus        59 ~~~~W~~l~~~~-------~~p~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~W~~~~---~~~~~R~~  121 (390)
                      -+-.|.+++.-.       ..|..|..|-++...+.       |-++...+. ++|.|+-..+.|..+.   ..|-+|..
T Consensus       237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~-DFW~Y~v~e~~W~~iN~~t~~PG~RsC  315 (723)
T KOG2437|consen  237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLA-DFWAYSVKENQWTCINRDTEGPGARSC  315 (723)
T ss_pred             ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHH-HHHhhcCCcceeEEeecCCCCCcchhh
Confidence            345788887765       55666888887766552       555666666 9999999999998874   37889999


Q ss_pred             ceEEEECC--EEEEEecCCCCC-----CCCCeEEEEeCCCCceeecCCC----CCCCCCcceEEEEeCCE--EEEEecee
Q 016413          122 GAAIQIKN--LFYVFAGYGSLD-----YVHSHVDVYNFTDNKWVDRFDM----PKDMAHSHLGVVSDGRY--IYIVSGQY  188 (390)
Q Consensus       122 ~~~~~~~~--~lyv~GG~~~~~-----~~~~~v~~yd~~~~~W~~~~~l----~~~~~r~~~~~~~~~~~--iyv~GG~~  188 (390)
                      |.+++.-.  |||++|-+-+..     ....+.|+||..++.|..+.--    ..|..-+.|.+++.+.+  |||+||..
T Consensus       316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~  395 (723)
T KOG2437|consen  316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI  395 (723)
T ss_pred             hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence            99988755  999999874322     2356899999999999876321    22445678888888777  99999985


Q ss_pred             CCCCCCCCceEEEEECCCCCeEeCCCC----------CCCCCCceEE--EECCEEEEEccCCCCCCCCCcceEEe
Q 016413          189 GPQCRGPTSRTFVLDSETRKWDSIPPL----------PSPRYSPATQ--LWRGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       189 ~~~~~~~~~~v~~yd~~~~~W~~~~~~----------p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      -........-++.||.+...|..+...          -..|-+|.+-  .-++.+|++||............|++
T Consensus       396 ~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I  470 (723)
T KOG2437|consen  396 LTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDI  470 (723)
T ss_pred             ccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhccee
Confidence            443324568899999999999887521          1335555543  45778999999865443333444443

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.23  E-value=1.1e-11  Score=80.50  Aligned_cols=47  Identities=34%  Similarity=0.592  Sum_probs=43.0

Q ss_pred             cCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCC
Q 016413          118 PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP  164 (390)
Q Consensus       118 ~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~  164 (390)
                      ||..|++++++++|||+||.+.....++++++||+.+++|+.+++||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            68999999999999999999986667899999999999999999886

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.10  E-value=1.3e-10  Score=75.40  Aligned_cols=47  Identities=36%  Similarity=0.695  Sum_probs=42.0

Q ss_pred             CCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCC
Q 016413          168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP  216 (390)
Q Consensus       168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p  216 (390)
                      +|..+++++++++|||+||.+...  ..++++++||+++++|+.+++||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~--~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNN--QPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTS--SBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeecccC--ceeeeEEEEeCCCCEEEEcCCCC
Confidence            488999999999999999998833  56899999999999999999886

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.07  E-value=4.4e-10  Score=73.42  Aligned_cols=47  Identities=28%  Similarity=0.515  Sum_probs=41.3

Q ss_pred             cCCCceEEEECCEEEEEecC--CCCCCCCCeEEEEeCCCCceeecCCCC
Q 016413          118 PRLDGAAIQIKNLFYVFAGY--GSLDYVHSHVDVYNFTDNKWVDRFDMP  164 (390)
Q Consensus       118 ~R~~~~~~~~~~~lyv~GG~--~~~~~~~~~v~~yd~~~~~W~~~~~l~  164 (390)
                      ||..|++++++++|||+||.  +......+++++||+++++|+.+++|+
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            68899999999999999999  334456789999999999999998875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=99.05  E-value=2.1e-10  Score=75.08  Aligned_cols=47  Identities=30%  Similarity=0.544  Sum_probs=32.1

Q ss_pred             cCCCceEEEE-CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCC
Q 016413          118 PRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP  164 (390)
Q Consensus       118 ~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~  164 (390)
                      ||.+|+++.+ +++|||+||.+.....++++|+||+.+++|++++++|
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            6999999998 5899999999887667899999999999999998776

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.99  E-value=9.8e-10  Score=71.76  Aligned_cols=49  Identities=24%  Similarity=0.481  Sum_probs=42.3

Q ss_pred             CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEE
Q 016413          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW  227 (390)
Q Consensus       178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~  227 (390)
                      +++||||||.+.... ..++++++||+.+++|++++++|.+|.+|+++++
T Consensus         1 g~~~~vfGG~~~~~~-~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGG-TRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCCC-CEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence            578999999984222 5589999999999999999999999999999863

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.97  E-value=1.9e-09  Score=70.45  Aligned_cols=49  Identities=20%  Similarity=0.384  Sum_probs=40.9

Q ss_pred             CCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCC
Q 016413          168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP  216 (390)
Q Consensus       168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p  216 (390)
                      +|..|++++.+++|||+||..........+++++||+++++|+.+++||
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            4889999999999999999922222245899999999999999999875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.95  E-value=2.2e-09  Score=70.11  Aligned_cols=48  Identities=27%  Similarity=0.398  Sum_probs=41.0

Q ss_pred             CCEEEEEecCC-CCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe
Q 016413          128 KNLFYVFAGYG-SLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD  177 (390)
Q Consensus       128 ~~~lyv~GG~~-~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~  177 (390)
                      +++|||+||.+ .....++++++||+.+++|++++++|.  +|.+|+++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~--~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP--PRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC--CccceEEEEC
Confidence            57999999998 345568999999999999999988876  6999998763

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.88  E-value=2.7e-09  Score=69.77  Aligned_cols=47  Identities=26%  Similarity=0.542  Sum_probs=31.0

Q ss_pred             CCcceEEEEe-CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCC
Q 016413          168 AHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP  216 (390)
Q Consensus       168 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p  216 (390)
                      +|..|+++.+ +++|||+||.+...  ..++++++||+++++|+++++||
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~--~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSG--SPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-T--EE---EEEEETTTTEEEE--SS-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCC--cccCCEEEEECCCCEEEECCCCC
Confidence            4788888887 58999999998864  35899999999999999998887

>smart00612 Kelch Kelch domain

Probab=98.87  E-value=3.9e-09  Score=68.24  Aligned_cols=47  Identities=34%  Similarity=0.624  Sum_probs=41.3

Q ss_pred             EEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECC
Q 016413          180 YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRG  229 (390)
Q Consensus       180 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~  229 (390)
                      +|||+||.+..   ...+++++||+.+++|+.+++||.+|..++++++++
T Consensus         1 ~iyv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGG---QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCC---ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence            48999998653   347899999999999999999999999999988764

>smart00612 Kelch Kelch domain

Probab=98.75  E-value=1.8e-08  Score=65.07  Aligned_cols=47  Identities=30%  Similarity=0.426  Sum_probs=39.3

Q ss_pred             EEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCC
Q 016413          130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGR  179 (390)
Q Consensus       130 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~  179 (390)
                      +|||+||.... ..++++++||+.+++|+.+++|+.  +|..++++++++
T Consensus         1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~--~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPT--PRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCC--ccccceEEEeCC
Confidence            48999998753 346889999999999999999987  588888887764

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.69  E-value=2.1e-06  Score=75.42  Aligned_cols=152  Identities=16%  Similarity=0.247  Sum_probs=97.1

Q ss_pred             eEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCC----CCeEeCC-CCCCCCC
Q 016413          146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET----RKWDSIP-PLPSPRY  220 (390)
Q Consensus       146 ~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~----~~W~~~~-~~p~~r~  220 (390)
                      .-..||+.+++++.+....- . -+...+..-+|.+.++||....     ...+..|++.+    ..|.+.+ .|..+|.
T Consensus        47 ~s~~yD~~tn~~rpl~v~td-~-FCSgg~~L~dG~ll~tGG~~~G-----~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW  119 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQTD-T-FCSGGAFLPDGRLLQTGGDNDG-----NKAIRIFTPCTSDGTCDWTESPNDMQSGRW  119 (243)
T ss_pred             EEEEEecCCCcEEeccCCCC-C-cccCcCCCCCCCEEEeCCCCcc-----ccceEEEecCCCCCCCCceECcccccCCCc
Confidence            45679999999998754322 1 2222334468999999997542     45567788765    5798876 5899999


Q ss_pred             CceEEEE-CCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEcc----CCCCCCCceeEEEECCEEEEEcCCCCCC
Q 016413          221 SPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI----PIPRGGPHRACFVFNDRLFVVGGQEGDF  295 (390)
Q Consensus       221 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~----~~p~~~~~~~~~~~~~~iyv~GG~~~~~  295 (390)
                      +.++..+ +++++|+||....    ..+.|.-.  ...+....|..+.    ..+...+-+....-+|+||+++...   
T Consensus       120 YpT~~~L~DG~vlIvGG~~~~----t~E~~P~~--~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~---  190 (243)
T PF07250_consen  120 YPTATTLPDGRVLIVGGSNNP----TYEFWPPK--GPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG---  190 (243)
T ss_pred             cccceECCCCCEEEEeCcCCC----cccccCCc--cCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC---
Confidence            9888866 7899999998732    22222100  0001112222222    2344555556677799999999853   


Q ss_pred             CCCCCCCccccccccceecCcEEeeC-CCCCe-EECCCCCC
Q 016413          296 MAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW-KVLPPMPK  334 (390)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W-~~~~~~~~  334 (390)
                                           -.+|| .++++ +.++.+|.
T Consensus       191 ---------------------s~i~d~~~n~v~~~lP~lPg  210 (243)
T PF07250_consen  191 ---------------------SIIYDYKTNTVVRTLPDLPG  210 (243)
T ss_pred             ---------------------cEEEeCCCCeEEeeCCCCCC
Confidence                                 45667 66655 78888875

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF13854 Kelch_5: Kelch motif

Probab=98.67  E-value=5.4e-08  Score=61.05  Aligned_cols=41  Identities=24%  Similarity=0.494  Sum_probs=36.0

Q ss_pred             CCCcCCCceEEEECCEEEEEecCCC-CCCCCCeEEEEeCCCC
Q 016413          115 APVPRLDGAAIQIKNLFYVFAGYGS-LDYVHSHVDVYNFTDN  155 (390)
Q Consensus       115 ~~~~R~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~~~  155 (390)
                      +|.+|..|++++++++|||+||.+. ....++++|+||+.+.
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF   42 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence            4889999999999999999999994 5567899999998763

>PLN02772 guanylate kinase

Probab=98.56  E-value=5.9e-07  Score=83.68  Aligned_cols=86  Identities=16%  Similarity=0.254  Sum_probs=67.1

Q ss_pred             CCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCC-CCCCCcceEEEEe-CCEEEEEeceeCCCCC
Q 016413          116 PVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP-KDMAHSHLGVVSD-GRYIYIVSGQYGPQCR  193 (390)
Q Consensus       116 ~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~-~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~  193 (390)
                      ..||..++++.+++++||+||.+......+.+++||..+++|....-+. .|.+|.+|+++++ +++|+|+++-.+.   
T Consensus        22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~---   98 (398)
T PLN02772         22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP---   98 (398)
T ss_pred             CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence            3588899999999999999998775446789999999999998754332 2457888998877 7899999864432   


Q ss_pred             CCCceEEEEECCC
Q 016413          194 GPTSRTFVLDSET  206 (390)
Q Consensus       194 ~~~~~v~~yd~~~  206 (390)
                        .+++|.+...|
T Consensus        99 --~~~~w~l~~~t  109 (398)
T PLN02772         99 --DDSIWFLEVDT  109 (398)
T ss_pred             --ccceEEEEcCC
Confidence              36677776655

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.39  E-value=1.9e-05  Score=69.43  Aligned_cols=152  Identities=13%  Similarity=0.205  Sum_probs=96.6

Q ss_pred             eEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEcc-CCCCCCCce
Q 016413          198 RTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI-PIPRGGPHR  276 (390)
Q Consensus       198 ~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~p~~~~~~  276 (390)
                      .--.||+.+++++.+.-....-+...+..-++++.+.||....  ...+..|+..  . +..+..|.+.. .|..+|-.+
T Consensus        47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~--~-~~~~~~w~e~~~~m~~~RWYp  121 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPC--T-SDGTCDWTESPNDMQSGRWYP  121 (243)
T ss_pred             EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecC--C-CCCCCCceECcccccCCCccc
Confidence            3457999999999886443333333344558999999998652  3345555521  0 12356898875 488888877


Q ss_pred             eEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeCCC------CCeEECCCC--CCCCCcceeEEEEEC
Q 016413          277 ACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDE------MKWKVLPPM--PKPNSHIECAWVIVN  347 (390)
Q Consensus       277 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~------~~W~~~~~~--~~~~~~~~~~~~~~~  347 (390)
                      ++..+ +|+++|+||.....                     .+.+.+.      ..|..+...  ..+........+.-+
T Consensus       122 T~~~L~DG~vlIvGG~~~~t---------------------~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPd  180 (243)
T PF07250_consen  122 TATTLPDGRVLIVGGSNNPT---------------------YEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPD  180 (243)
T ss_pred             cceECCCCCEEEEeCcCCCc---------------------ccccCCccCCCCceeeecchhhhccCccccCceEEEcCC
Confidence            77655 89999999987431                     2222221      122222211  123333344456779


Q ss_pred             CEEEEEcCCCCCCCcceeeEEeeeEEEeecCccce-eeccCCC
Q 016413          348 NSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVI-IYHYRPP  389 (390)
Q Consensus       348 ~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W-~~v~~~P  389 (390)
                      |+|++++...              ..+||+.++++ ..++.+|
T Consensus       181 G~lFi~an~~--------------s~i~d~~~n~v~~~lP~lP  209 (243)
T PF07250_consen  181 GNLFIFANRG--------------SIIYDYKTNTVVRTLPDLP  209 (243)
T ss_pred             CCEEEEEcCC--------------cEEEeCCCCeEEeeCCCCC
Confidence            9999998853              55889999977 6788887

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PLN02772 guanylate kinase

Probab=98.37  E-value=2e-06  Score=80.27  Aligned_cols=70  Identities=19%  Similarity=0.248  Sum_probs=60.0

Q ss_pred             CCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC---CCCCCCCCceEEEE-CCEEEEEccCCC
Q 016413          168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLW-RGRLHVMGGSKE  239 (390)
Q Consensus       168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~  239 (390)
                      ++..++++.+++++||+||.+...  ...+.+++||..+.+|....   +.|.+|.+|+++++ +++|+|+++...
T Consensus        24 ~~~~~tav~igdk~yv~GG~~d~~--~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~   97 (398)
T PLN02772         24 PKNRETSVTIGDKTYVIGGNHEGN--TLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA   97 (398)
T ss_pred             CCCcceeEEECCEEEEEcccCCCc--cccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC
Confidence            477899999999999999976643  24789999999999998875   67899999999988 679999997654

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.36  E-value=0.0001  Score=65.18  Aligned_cols=181  Identities=14%  Similarity=0.225  Sum_probs=109.6

Q ss_pred             cccccccCCCCeEECCCCCCcCC--Cc--eEEEEC----C-EEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCC
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRL--DG--AAIQIK----N-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMA  168 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~--~~--~~~~~~----~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~  168 (390)
                      .+...||.+.+|..+|+.+.++.  ..  ....++    + ||..+....... ....+++|+..+++|+.+...+....
T Consensus        15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~~~~~~   93 (230)
T TIGR01640        15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECSPPHHP   93 (230)
T ss_pred             cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccCCCCcc
Confidence            68889999999999987554321  11  111222    2 566665432111 23468999999999999874333211


Q ss_pred             CcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCC----CceEEEECCEEEEEccCCCCCCCC
Q 016413          169 HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRY----SPATQLWRGRLHVMGGSKENRHTP  244 (390)
Q Consensus       169 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~~~  244 (390)
                      ... ..+.++|.||-+.-.....   ....+..||..+.+|+..-++|..+.    ...++.++|+|.++.....   ..
T Consensus        94 ~~~-~~v~~~G~lyw~~~~~~~~---~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~---~~  166 (230)
T TIGR01640        94 LKS-RGVCINGVLYYLAYTLKTN---PDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKD---TN  166 (230)
T ss_pred             ccC-CeEEECCEEEEEEEECCCC---CcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCC---CC
Confidence            122 2667899999987432211   12379999999999995223443322    3457788999998865432   13


Q ss_pred             CcceEEeeeeccccccCCeEEccCCC-----CCC--CceeEEEECCEEEEEcC
Q 016413          245 GLEHWSIAVKDGKALEKAWRTEIPIP-----RGG--PHRACFVFNDRLFVVGG  290 (390)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~W~~~~~~p-----~~~--~~~~~~~~~~~iyv~GG  290 (390)
                      .++.|.++  ++  ....|++.-.++     ...  .....+..+++|++.-.
T Consensus       167 ~~~IWvl~--d~--~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~  215 (230)
T TIGR01640       167 NFDLWVLN--DA--GKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE  215 (230)
T ss_pred             cEEEEEEC--CC--CCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence            47778764  22  234599863222     111  12355777889888765

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.35  E-value=0.00013  Score=64.68  Aligned_cols=198  Identities=14%  Similarity=0.124  Sum_probs=111.7

Q ss_pred             CeEEEEeCCCCceeecCCCCCCC---CCcceEEEEe----CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCC
Q 016413          145 SHVDVYNFTDNKWVDRFDMPKDM---AHSHLGVVSD----GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS  217 (390)
Q Consensus       145 ~~v~~yd~~~~~W~~~~~l~~~~---~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~  217 (390)
                      ..+.++||.|.+|..+++.+.+.   .+...+....    +-||..+......   .....+++|+..++.|+.+...+.
T Consensus        14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~---~~~~~~~Vys~~~~~Wr~~~~~~~   90 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN---RNQSEHQVYTLGSNSWRTIECSPP   90 (230)
T ss_pred             CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC---CCCccEEEEEeCCCCccccccCCC
Confidence            35899999999999997644321   1111111111    1245555432111   124578999999999999874332


Q ss_pred             C-CCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCC----CceeEEEECCEEEEEcCCC
Q 016413          218 P-RYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG----PHRACFVFNDRLFVVGGQE  292 (390)
Q Consensus       218 ~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~----~~~~~~~~~~~iyv~GG~~  292 (390)
                      . ......+.++|.||-+.-.........+-.       ||..+++|....++|...    .....+.++|+|.++....
T Consensus        91 ~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Ivs-------FDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~  163 (230)
T TIGR01640        91 HHPLKSRGVCINGVLYYLAYTLKTNPDYFIVS-------FDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKK  163 (230)
T ss_pred             CccccCCeEEECCEEEEEEEECCCCCcEEEEE-------EEcccceEeeeeecCccccccccceEEEEECCEEEEEEecC
Confidence            1 112236788999999875332111112333       335789999533334322    1346778889998876543


Q ss_pred             CCCCCCCCCCccccccccceecCcEEeeC-C-CCCeEECCCCC---CCCCc--ceeEEEEECCEEEEEcCCCCCCCccee
Q 016413          293 GDFMAKPGSPIFKCSRRHEVVYGDVYMLD-D-EMKWKVLPPMP---KPNSH--IECAWVIVNNSIIITGGTTEKHPMTKR  365 (390)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~-~~~W~~~~~~~---~~~~~--~~~~~~~~~~~l~v~GG~~~~~~~~~~  365 (390)
                      ...                  .-+||+.+ . ..+|+++-.++   .+...  .....+..+|+|++.... ...     
T Consensus       164 ~~~------------------~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~~-----  219 (230)
T TIGR01640       164 DTN------------------NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-ENP-----  219 (230)
T ss_pred             CCC------------------cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CCc-----
Confidence            211                  12588886 3 45899754333   11111  113335667888887753 111     


Q ss_pred             eEEeeeEEEeecCcc
Q 016413          366 MILVGEVFQFHLDSL  380 (390)
Q Consensus       366 ~~~~~~v~~yd~~~~  380 (390)
                          .-+..||+++|
T Consensus       220 ----~~~~~y~~~~~  230 (230)
T TIGR01640       220 ----FYIFYYNVGEN  230 (230)
T ss_pred             ----eEEEEEeccCC
Confidence                13889998875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF13854 Kelch_5: Kelch motif

Probab=98.33  E-value=1.3e-06  Score=54.72  Aligned_cols=40  Identities=25%  Similarity=0.321  Sum_probs=33.0

Q ss_pred             CCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          166 DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       166 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      |.+|..|++++++++|||+||.+. ......+++|+||+.+
T Consensus         2 P~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    2 PSPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCC
Confidence            346999999999999999999985 1124589999999875

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=98.02  E-value=0.00058  Score=59.98  Aligned_cols=158  Identities=14%  Similarity=0.142  Sum_probs=93.8

Q ss_pred             EEE-EecCCCCCCCCCeEEEEeCCCCc--------e---eecCCCCCCCCCcceEEEEeC----CEEEEEeceeCCCC--
Q 016413          131 FYV-FAGYGSLDYVHSHVDVYNFTDNK--------W---VDRFDMPKDMAHSHLGVVSDG----RYIYIVSGQYGPQC--  192 (390)
Q Consensus       131 lyv-~GG~~~~~~~~~~v~~yd~~~~~--------W---~~~~~l~~~~~r~~~~~~~~~----~~iyv~GG~~~~~~--  192 (390)
                      .|+ -||...+....+++++....+..        .   +.+.++|.  +|++|++.++.    ....+|||..--..  
T Consensus        40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~--aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q  117 (337)
T PF03089_consen   40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPE--ARYGHTINVVHSRGKTACVLFGGRSYMPPGQ  117 (337)
T ss_pred             eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCc--ccccceEEEEEECCcEEEEEECCcccCCccc
Confidence            454 48888777777888887665432        1   12345565  79999987752    35778999742110  


Q ss_pred             ---------CCCCceEEEEECCCCCeEe--CCCCCCCCCCceEEEECCEEEEEccCCCCC--CCCCcceEEeeeeccccc
Q 016413          193 ---------RGPTSRTFVLDSETRKWDS--IPPLPSPRYSPATQLWRGRLHVMGGSKENR--HTPGLEHWSIAVKDGKAL  259 (390)
Q Consensus       193 ---------~~~~~~v~~yd~~~~~W~~--~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~~~~~~~~~~  259 (390)
                               ......|+..|++-.-.+.  ++.+..+.+.|.+..-++.+|++||+....  ..+...+..++..-.+  
T Consensus       118 RTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGS--  195 (337)
T PF03089_consen  118 RTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGS--  195 (337)
T ss_pred             cchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCC--
Confidence                     0113567888888776643  456777888999999999999999986543  2333333333211111  


Q ss_pred             cCCeEEccCCCCCCCceeEEEE---CCEEEEEcCCCCC
Q 016413          260 EKAWRTEIPIPRGGPHRACFVF---NDRLFVVGGQEGD  294 (390)
Q Consensus       260 ~~~W~~~~~~p~~~~~~~~~~~---~~~iyv~GG~~~~  294 (390)
                        -.....-++....-.++++.   .++.+|+||+..+
T Consensus       196 --P~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sd  231 (337)
T PF03089_consen  196 --PAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSD  231 (337)
T ss_pred             --ceeEEEECCCCceEeeeeEeecCCCceEEEeccccc
Confidence              11111223333332233322   3678899999754

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.68  E-value=0.031  Score=53.76  Aligned_cols=254  Identities=14%  Similarity=0.145  Sum_probs=128.5

Q ss_pred             HHhhccEEEEecCCCCCCCccccceeeeeccCCCc--eEeecCCCCCcc-----ccccceEEEecCCCchhHHHhhhccc
Q 016413           28 AALIADFMWASSSSSFSSSSAHLSVASNWALEKSG--VVVIPHVNATKI-----DRQRESVAVIDKKGQDAERFLSATFA  100 (390)
Q Consensus        28 ~~~~~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~--W~~l~~~~~~p~-----~r~~~~~~~~~~~~~~~~~~~~~~~~  100 (390)
                      .++.++.+|+....  +       .+.++|..+.+  |..-..-.....     .+...+.++.++.-...  ..+..++
T Consensus        65 Pvv~~~~vy~~~~~--g-------~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~--~~~g~l~  133 (394)
T PRK11138         65 PAVAYNKVYAADRA--G-------LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIG--SEKGQVY  133 (394)
T ss_pred             cEEECCEEEEECCC--C-------eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEE--cCCCEEE
Confidence            35678888887643  3       67889987654  865221110000     01111122222211111  1233678


Q ss_pred             ccccCCC--CeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCc--eeecCCCCCCCCCcceEEEE
Q 016413          101 DLPAPDL--EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVS  176 (390)
Q Consensus       101 ~~~~~~~--~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~~r~~~~~~~  176 (390)
                      .+|..+.  .|+.-.+-+   ...+.++.++.||+..+.       ..+..+|+++.+  |+.-...+....+...+-++
T Consensus       134 ald~~tG~~~W~~~~~~~---~~ssP~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v  203 (394)
T PRK11138        134 ALNAEDGEVAWQTKVAGE---ALSRPVVSDGLVLVHTSN-------GMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT  203 (394)
T ss_pred             EEECCCCCCcccccCCCc---eecCCEEECCEEEEECCC-------CEEEEEEccCCCEeeeecCCCCcccccCCCCCEE
Confidence            8887654  686532211   122335568888875321       358999998765  87643322111122233445


Q ss_pred             eCCEEEEEeceeCCCCCCCCceEEEEECCCC--CeEeCCCCCCC--------CCCceEEEECCEEEEEccCCCCCCCCCc
Q 016413          177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSIPPLPSP--------RYSPATQLWRGRLHVMGGSKENRHTPGL  246 (390)
Q Consensus       177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~  246 (390)
                      .++.+|+..+         ...+..+|+++.  .|+.-...|..        ....+-++.++.+|+.+..      ..+
T Consensus       204 ~~~~v~~~~~---------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~------g~l  268 (394)
T PRK11138        204 AFGGAIVGGD---------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN------GNL  268 (394)
T ss_pred             ECCEEEEEcC---------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC------CeE
Confidence            6777776433         245777887765  48753222211        1123345678899986521      233


Q ss_pred             ceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCC-
Q 016413          247 EHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM-  324 (390)
Q Consensus       247 ~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~-  324 (390)
                      .++|.     ......|+....  ..   ...++.+++||+....                       ..++.+| .+. 
T Consensus       269 ~ald~-----~tG~~~W~~~~~--~~---~~~~~~~~~vy~~~~~-----------------------g~l~ald~~tG~  315 (394)
T PRK11138        269 VALDL-----RSGQIVWKREYG--SV---NDFAVDGGRIYLVDQN-----------------------DRVYALDTRGGV  315 (394)
T ss_pred             EEEEC-----CCCCEEEeecCC--Cc---cCcEEECCEEEEEcCC-----------------------CeEEEEECCCCc
Confidence            44442     123345875321  11   1356778999987532                       1388888 433 


Q ss_pred             -CeEECCCCCCCCCcceeEEEEECCEEEEEc
Q 016413          325 -KWKVLPPMPKPNSHIECAWVIVNNSIIITG  354 (390)
Q Consensus       325 -~W~~~~~~~~~~~~~~~~~~~~~~~l~v~G  354 (390)
                       .|+.-. +.. +..  .+.++.++.||+..
T Consensus       316 ~~W~~~~-~~~-~~~--~sp~v~~g~l~v~~  342 (394)
T PRK11138        316 ELWSQSD-LLH-RLL--TAPVLYNGYLVVGD  342 (394)
T ss_pred             EEEcccc-cCC-Ccc--cCCEEECCEEEEEe
Confidence             686421 111 111  22356788888753

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=97.64  E-value=0.0057  Score=57.40  Aligned_cols=128  Identities=24%  Similarity=0.312  Sum_probs=82.7

Q ss_pred             eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCc--ceEEeeee
Q 016413          177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGL--EHWSIAVK  254 (390)
Q Consensus       177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~--~~~~~~~~  254 (390)
                      .+++|+.++..         ....+||.++..=...+.|+.+.....++.++++||++............  ..|+...+
T Consensus        75 ~gskIv~~d~~---------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~  145 (342)
T PF07893_consen   75 HGSKIVAVDQS---------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVY  145 (342)
T ss_pred             cCCeEEEEcCC---------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecc
Confidence            58999998642         34789999998888888888777777888889999999876433211110  13333222


Q ss_pred             c------cccccCCeEEccCCCCCCC-------ceeEEEE-CCEEEE-EcCCCCCCCCCCCCCccccccccceecCcEEe
Q 016413          255 D------GKALEKAWRTEIPIPRGGP-------HRACFVF-NDRLFV-VGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYM  319 (390)
Q Consensus       255 ~------~~~~~~~W~~~~~~p~~~~-------~~~~~~~-~~~iyv-~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  319 (390)
                      +      .....-.|+.+++.|....       -.+.+++ +..|+| .-|...                      -.|.
T Consensus       146 ~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~----------------------GTys  203 (342)
T PF07893_consen  146 RPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRW----------------------GTYS  203 (342)
T ss_pred             ccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCce----------------------EEEE
Confidence            2      1123446888877654332       2345666 777888 444311                      1899


Q ss_pred             eC-CCCCeEECCCCCCC
Q 016413          320 LD-DEMKWKVLPPMPKP  335 (390)
Q Consensus       320 yd-~~~~W~~~~~~~~~  335 (390)
                      || .+.+|+...+-..|
T Consensus       204 fDt~~~~W~~~GdW~LP  220 (342)
T PF07893_consen  204 FDTESHEWRKHGDWMLP  220 (342)
T ss_pred             EEcCCcceeeccceecC
Confidence            99 77899999854333

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=97.04  E-value=0.023  Score=50.24  Aligned_cols=150  Identities=13%  Similarity=0.128  Sum_probs=82.9

Q ss_pred             CchhHHHhhhcccccccCCCC--------e---EECCCCCCcCCCceEEEEC--C--EEEEEecCCCCC-----------
Q 016413           88 GQDAERFLSATFADLPAPDLE--------W---EQMPSAPVPRLDGAAIQIK--N--LFYVFAGYGSLD-----------  141 (390)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~--------W---~~~~~~~~~R~~~~~~~~~--~--~lyv~GG~~~~~-----------  141 (390)
                      |....+.++..+|........        .   .-+..+|.+|++|++-++.  +  -+.+|||+.-..           
T Consensus        46 GrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNs  125 (337)
T PF03089_consen   46 GRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNS  125 (337)
T ss_pred             CcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcce
Confidence            444444555566665443332        1   1124689999999997662  3  488889974211           


Q ss_pred             --CCCCeEEEEeCCCCceee--cCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCC---CCeEeCCC
Q 016413          142 --YVHSHVDVYNFTDNKWVD--RFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET---RKWDSIPP  214 (390)
Q Consensus       142 --~~~~~v~~yd~~~~~W~~--~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~---~~W~~~~~  214 (390)
                        .....|+..|++-.-.+.  ++.+..  ..++|.+..-++.+|++||..-....+ -..+++.-.+-   .-.-...-
T Consensus       126 VvDC~P~VfLiDleFGC~tah~lpEl~d--G~SFHvslar~D~VYilGGHsl~sd~R-pp~l~rlkVdLllGSP~vsC~v  202 (337)
T PF03089_consen  126 VVDCPPQVFLIDLEFGCCTAHTLPELQD--GQSFHVSLARNDCVYILGGHSLESDSR-PPRLYRLKVDLLLGSPAVSCTV  202 (337)
T ss_pred             eccCCCeEEEEeccccccccccchhhcC--CeEEEEEEecCceEEEEccEEccCCCC-CCcEEEEEEeecCCCceeEEEE
Confidence              123456777776554432  344444  466777778899999999986544312 23344443221   11111112


Q ss_pred             CCCCCCCceEEE---ECCEEEEEccCCCC
Q 016413          215 LPSPRYSPATQL---WRGRLHVMGGSKEN  240 (390)
Q Consensus       215 ~p~~r~~~~~~~---~~~~iyv~GG~~~~  240 (390)
                      ++.+.+-.++.+   -.++..|+||+..+
T Consensus       203 l~~glSisSAIvt~~~~~e~iIlGGY~sd  231 (337)
T PF03089_consen  203 LQGGLSISSAIVTQTGPHEYIILGGYQSD  231 (337)
T ss_pred             CCCCceEeeeeEeecCCCceEEEeccccc
Confidence            333333223222   24688999998654

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.95  E-value=0.26  Score=47.28  Aligned_cols=138  Identities=16%  Similarity=0.144  Sum_probs=74.6

Q ss_pred             eEEEECCEEEEEecCCCCCCCCCeEEEEeCCCC--ceeecCCCCC-C-----CCCcceEEEEeCCEEEEEeceeCCCCCC
Q 016413          123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPK-D-----MAHSHLGVVSDGRYIYIVSGQYGPQCRG  194 (390)
Q Consensus       123 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~l~~-~-----~~r~~~~~~~~~~~iyv~GG~~~~~~~~  194 (390)
                      +.++.+++||+....       ..+.+||..+.  .|+.-..-.. .     ..+...+.++.+++||+.+.        
T Consensus        64 sPvv~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~--------  128 (394)
T PRK11138         64 HPAVAYNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE--------  128 (394)
T ss_pred             ccEEECCEEEEECCC-------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC--------
Confidence            446679999997542       24888998765  4875321100 0     01223345677889987532        


Q ss_pred             CCceEEEEECCCC--CeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCC-
Q 016413          195 PTSRTFVLDSETR--KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPR-  271 (390)
Q Consensus       195 ~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~-  271 (390)
                       ...+.++|.++.  .|+.-.+  .+ ...+-++.++.+|+..+.      ..+..+|.     +.....|+.....|. 
T Consensus       129 -~g~l~ald~~tG~~~W~~~~~--~~-~~ssP~v~~~~v~v~~~~------g~l~ald~-----~tG~~~W~~~~~~~~~  193 (394)
T PRK11138        129 -KGQVYALNAEDGEVAWQTKVA--GE-ALSRPVVSDGLVLVHTSN------GMLQALNE-----SDGAVKWTVNLDVPSL  193 (394)
T ss_pred             -CCEEEEEECCCCCCcccccCC--Cc-eecCCEEECCEEEEECCC------CEEEEEEc-----cCCCEeeeecCCCCcc
Confidence             346889998664  5976432  11 122335668888876431      23444442     123445877543331 


Q ss_pred             -CCCceeEEEECCEEEEEcC
Q 016413          272 -GGPHRACFVFNDRLFVVGG  290 (390)
Q Consensus       272 -~~~~~~~~~~~~~iyv~GG  290 (390)
                       .+...+-++.++.+|+..+
T Consensus       194 ~~~~~~sP~v~~~~v~~~~~  213 (394)
T PRK11138        194 TLRGESAPATAFGGAIVGGD  213 (394)
T ss_pred             cccCCCCCEEECCEEEEEcC
Confidence             1111234556777766443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.76  E-value=0.35  Score=42.50  Aligned_cols=207  Identities=19%  Similarity=0.277  Sum_probs=112.1

Q ss_pred             cccccccCCC--CeEECCCCCCcCCCce--EEEECCEEEEEecCCCCCCCCCeEEEEeCCCCc--eeecCCCCCCCCCcc
Q 016413           98 TFADLPAPDL--EWEQMPSAPVPRLDGA--AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSH  171 (390)
Q Consensus        98 ~~~~~~~~~~--~W~~~~~~~~~R~~~~--~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~~r~~  171 (390)
                      .+..+|+.+.  .|+.-  +........  .+..++.+|+..+       ...+.++|+.+.+  |+.-  ++.   +..
T Consensus         4 ~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~--~~~---~~~   69 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFD--LPG---PIS   69 (238)
T ss_dssp             EEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEE--CSS---CGG
T ss_pred             EEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEee--ccc---ccc
Confidence            4556666444  57652  211233333  3347889998842       2469999997775  6653  233   222


Q ss_pred             eEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCC--CeE-eCCCCCCC--CCCceEEEECCEEEEEccCCCCCCCCCc
Q 016413          172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWD-SIPPLPSP--RYSPATQLWRGRLHVMGGSKENRHTPGL  246 (390)
Q Consensus       172 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~-~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~  246 (390)
                      ...+..++.||+...         .+.+..+|..+.  .|+ .....+..  +......+.++.+|+...      ...+
T Consensus        70 ~~~~~~~~~v~v~~~---------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l  134 (238)
T PF13360_consen   70 GAPVVDGGRVYVGTS---------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKL  134 (238)
T ss_dssp             SGEEEETTEEEEEET---------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEE
T ss_pred             ceeeecccccccccc---------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec------cCcE
Confidence            224778999988862         237899997665  498 44432322  233445556777777753      1223


Q ss_pred             ceEEeeeeccccccCCeEEccCCCCCCC--------ceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEE
Q 016413          247 EHWSIAVKDGKALEKAWRTEIPIPRGGP--------HRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVY  318 (390)
Q Consensus       247 ~~~~~~~~~~~~~~~~W~~~~~~p~~~~--------~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~  318 (390)
                      ..++.     +.....|+.....+....        ....+..++.+|+..+...                       +.
T Consensus       135 ~~~d~-----~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-----------------------~~  186 (238)
T PF13360_consen  135 VALDP-----KTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-----------------------VV  186 (238)
T ss_dssp             EEEET-----TTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-----------------------EE
T ss_pred             EEEec-----CCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe-----------------------EE
Confidence            33332     123445776544443211        1233445678888776431                       45


Q ss_pred             eeC-CCC--CeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCcc
Q 016413          319 MLD-DEM--KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSL  380 (390)
Q Consensus       319 ~yd-~~~--~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~  380 (390)
                      .+| .+.  .|+..  +..    ........++.||+.. .+  .          .++++|+++.
T Consensus       187 ~~d~~tg~~~w~~~--~~~----~~~~~~~~~~~l~~~~-~~--~----------~l~~~d~~tG  232 (238)
T PF13360_consen  187 AVDLATGEKLWSKP--ISG----IYSLPSVDGGTLYVTS-SD--G----------RLYALDLKTG  232 (238)
T ss_dssp             EEETTTTEEEEEEC--SS-----ECECEECCCTEEEEEE-TT--T----------EEEEEETTTT
T ss_pred             EEECCCCCEEEEec--CCC----ccCCceeeCCEEEEEe-CC--C----------EEEEEECCCC
Confidence            557 554  48443  222    1111355577777776 22  1          4899999886

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.53  E-value=0.78  Score=43.68  Aligned_cols=210  Identities=13%  Similarity=0.115  Sum_probs=104.0

Q ss_pred             HHHhhccEEEEecCCCCCCCccccceeeeeccCCCc--eEe-ecCCCCCccccccceEEEecCCCchhHHHhhhcccccc
Q 016413           27 GAALIADFMWASSSSSFSSSSAHLSVASNWALEKSG--VVV-IPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLP  103 (390)
Q Consensus        27 ~~~~~~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~--W~~-l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (390)
                      +.++.++.+|+.+.  ++       .+.+||+.+.+  |.. ++...       ..+.++.++.-..  ...+..++.+|
T Consensus        60 ~p~v~~~~v~v~~~--~g-------~v~a~d~~tG~~~W~~~~~~~~-------~~~p~v~~~~v~v--~~~~g~l~ald  121 (377)
T TIGR03300        60 QPAVAGGKVYAADA--DG-------TVVALDAETGKRLWRVDLDERL-------SGGVGADGGLVFV--GTEKGEVIALD  121 (377)
T ss_pred             ceEEECCEEEEECC--CC-------eEEEEEccCCcEeeeecCCCCc-------ccceEEcCCEEEE--EcCCCEEEEEE
Confidence            33566777776553  23       68899977654  764 22210       1111111111000  01233678888


Q ss_pred             cCCC--CeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCC--ceeecCCCCCCCCCcceEEEEeCC
Q 016413          104 APDL--EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDMAHSHLGVVSDGR  179 (390)
Q Consensus       104 ~~~~--~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~~~r~~~~~~~~~~  179 (390)
                      ..+.  .|+.-..-  . ...+.++.++++|+..+ +      ..+..+|+++.  .|+.-...+....+...+.++.++
T Consensus       122 ~~tG~~~W~~~~~~--~-~~~~p~v~~~~v~v~~~-~------g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~  191 (377)
T TIGR03300       122 AEDGKELWRAKLSS--E-VLSPPLVANGLVVVRTN-D------GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADG  191 (377)
T ss_pred             CCCCcEeeeeccCc--e-eecCCEEECCEEEEECC-C------CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECC
Confidence            7554  58653221  1 11233456778877532 1      34889998765  487533222100122233455667


Q ss_pred             EEEEEeceeCCCCCCCCceEEEEECCCC--CeEeCCCCCCCC--------CCceEEEECCEEEEEccCCCCCCCCCcceE
Q 016413          180 YIYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSIPPLPSPR--------YSPATQLWRGRLHVMGGSKENRHTPGLEHW  249 (390)
Q Consensus       180 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  249 (390)
                      .+|+ |..        ...+..+|+.+.  .|+.-...+...        ...+.++.++.+|+....      ..+.++
T Consensus       192 ~v~~-~~~--------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~  256 (377)
T TIGR03300       192 GVLV-GFA--------GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAAL  256 (377)
T ss_pred             EEEE-ECC--------CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEE
Confidence            5554 321        245788888764  486532222111        122344568888886431      234444


Q ss_pred             EeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEc
Q 016413          250 SIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVG  289 (390)
Q Consensus       250 ~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~G  289 (390)
                      +..     .....|+.-.  +.   ..+.++.+++||+..
T Consensus       257 d~~-----tG~~~W~~~~--~~---~~~p~~~~~~vyv~~  286 (377)
T TIGR03300       257 DLR-----SGRVLWKRDA--SS---YQGPAVDDNRLYVTD  286 (377)
T ss_pred             ECC-----CCcEEEeecc--CC---ccCceEeCCEEEEEC
Confidence            431     2344576531  11   124456788998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK13684 Ycf48-like protein; Provisional

Probab=96.31  E-value=0.96  Score=42.38  Aligned_cols=197  Identities=11%  Similarity=0.020  Sum_probs=93.2

Q ss_pred             CCCceEeecCCCCCccccccceEEEecCC-CchhHHHhhhcccccccCCCCeEECCC-CCCcCC-CceEEEECCEEEEEe
Q 016413           59 EKSGVVVIPHVNATKIDRQRESVAVIDKK-GQDAERFLSATFADLPAPDLEWEQMPS-APVPRL-DGAAIQIKNLFYVFA  135 (390)
Q Consensus        59 ~~~~W~~l~~~~~~p~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~R~-~~~~~~~~~~lyv~G  135 (390)
                      ....|+++.. +..   ..-.+++..+.. +.....  ...++.-.-...+|++... ++..+. ..++...++..|+.|
T Consensus        33 ~~~~W~~~~~-~~~---~~l~~v~F~d~~~g~avG~--~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G  106 (334)
T PRK13684         33 SSSPWQVIDL-PTE---ANLLDIAFTDPNHGWLVGS--NRTLLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIVG  106 (334)
T ss_pred             cCCCcEEEec-CCC---CceEEEEEeCCCcEEEEEC--CCEEEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEeC
Confidence            4567977753 221   233444444332 221111  1244444445678998753 332222 223333455566664


Q ss_pred             cCCCCCCCCCeEEEEeCCCCceeecCCC-CCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC
Q 016413          136 GYGSLDYVHSHVDVYNFTDNKWVDRFDM-PKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP  214 (390)
Q Consensus       136 G~~~~~~~~~~v~~yd~~~~~W~~~~~l-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~  214 (390)
                      . .      ..+++=+-...+|+.+... ..|. ......+.-++.+|+.|.         ...+++-+-.-.+|+.+..
T Consensus       107 ~-~------g~i~~S~DgG~tW~~~~~~~~~~~-~~~~i~~~~~~~~~~~g~---------~G~i~~S~DgG~tW~~~~~  169 (334)
T PRK13684        107 Q-P------SLLLHTTDGGKNWTRIPLSEKLPG-SPYLITALGPGTAEMATN---------VGAIYRTTDGGKNWEALVE  169 (334)
T ss_pred             C-C------ceEEEECCCCCCCeEccCCcCCCC-CceEEEEECCCcceeeec---------cceEEEECCCCCCceeCcC
Confidence            2 1      1244433345689987532 1211 112222333455666653         3446666666789999864


Q ss_pred             CCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEE-EECCEEEEEcCC
Q 016413          215 LPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACF-VFNDRLFVVGGQ  291 (390)
Q Consensus       215 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~-~~~~~iyv~GG~  291 (390)
                      .. .-..+.+....+..+++.|..+.       .|..    .+....+|+.+........ .+++ .-+++++++|..
T Consensus       170 ~~-~g~~~~i~~~~~g~~v~~g~~G~-------i~~s----~~~gg~tW~~~~~~~~~~l-~~i~~~~~g~~~~vg~~  234 (334)
T PRK13684        170 DA-AGVVRNLRRSPDGKYVAVSSRGN-------FYST----WEPGQTAWTPHQRNSSRRL-QSMGFQPDGNLWMLARG  234 (334)
T ss_pred             CC-cceEEEEEECCCCeEEEEeCCce-------EEEE----cCCCCCeEEEeeCCCcccc-eeeeEcCCCCEEEEecC
Confidence            33 22334444445555555444321       1110    0023457988754322222 2333 346788888653

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=96.31  E-value=0.072  Score=48.27  Aligned_cols=121  Identities=14%  Similarity=0.146  Sum_probs=71.8

Q ss_pred             EEEecCCCCCC-CCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCCCCe
Q 016413          132 YVFAGYGSLDY-VHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKW  209 (390)
Q Consensus       132 yv~GG~~~~~~-~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W  209 (390)
                      ||-|-++.... ....+-.||+.+.+|..+..--.   -.-.++.. .+++||+.|-+.-..  .....+-.||.++.+|
T Consensus         2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~---G~V~~l~~~~~~~Llv~G~ft~~~--~~~~~la~yd~~~~~w   76 (281)
T PF12768_consen    2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGIS---GTVTDLQWASNNQLLVGGNFTLNG--TNSSNLATYDFKNQTW   76 (281)
T ss_pred             EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCce---EEEEEEEEecCCEEEEEEeeEECC--CCceeEEEEecCCCee
Confidence            44444444333 35679999999999998754311   11223333 478888888665443  1367789999999999


Q ss_pred             EeCCC-C----CCCCCCceEEE-ECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccC
Q 016413          210 DSIPP-L----PSPRYSPATQL-WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIP  268 (390)
Q Consensus       210 ~~~~~-~----p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~  268 (390)
                      +.+.. .    |.+........ -...+++.|... . -...+..||         ..+|+.+..
T Consensus        77 ~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~-~-g~~~l~~~d---------Gs~W~~i~~  130 (281)
T PF12768_consen   77 SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSA-N-GSTFLMKYD---------GSSWSSIGS  130 (281)
T ss_pred             eecCCcccccCCCcEEEEEeeccCCceEEEeceec-C-CCceEEEEc---------CCceEeccc
Confidence            98875 2    33322222221 234678777652 1 123344453         678887644

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.27  E-value=0.12  Score=48.62  Aligned_cols=112  Identities=14%  Similarity=0.169  Sum_probs=71.9

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCC----CeEEEE--eC--------CCCceeecCCC
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVH----SHVDVY--NF--------TDNKWVDRFDM  163 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~----~~v~~y--d~--------~~~~W~~~~~l  163 (390)
                      ....||..+..-...|.|+.+.....++.++++||++..........    ...|.+  ++        ..-.|+.+++.
T Consensus        87 ~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P  166 (342)
T PF07893_consen   87 RTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPP  166 (342)
T ss_pred             CeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCCC
Confidence            47788988887777788887777777888899999998764332110    144554  42        23367887664


Q ss_pred             CCCCCCc-----ceEEEEe-CCEEEE-EeceeCCCCCCCCceEEEEECCCCCeEeCCC--CCC
Q 016413          164 PKDMAHS-----HLGVVSD-GRYIYI-VSGQYGPQCRGPTSRTFVLDSETRKWDSIPP--LPS  217 (390)
Q Consensus       164 ~~~~~r~-----~~~~~~~-~~~iyv-~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~p~  217 (390)
                      |......     -.+-+++ +..|+| +-|..        .-.+.||..+.+|+++.+  ||.
T Consensus       167 Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~--------~GTysfDt~~~~W~~~GdW~LPF  221 (342)
T PF07893_consen  167 PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR--------WGTYSFDTESHEWRKHGDWMLPF  221 (342)
T ss_pred             CccccCCcccceEEEEEEecCCeEEEEecCCc--------eEEEEEEcCCcceeeccceecCc
Confidence            4322111     2333444 778888 33211        247899999999999985  554

>PRK13684 Ycf48-like protein; Provisional

Probab=96.10  E-value=0.99  Score=42.31  Aligned_cols=203  Identities=10%  Similarity=0.125  Sum_probs=99.8

Q ss_pred             ccccccCCCCeEECCCC-CCcCCCceEEEEC-CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE
Q 016413           99 FADLPAPDLEWEQMPSA-PVPRLDGAAIQIK-NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS  176 (390)
Q Consensus        99 ~~~~~~~~~~W~~~~~~-~~~R~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~  176 (390)
                      ++.-.-...+|+++... ..+.....+..++ +.+++.|..       ..+++=+-..++|+.+..-..   -..+.+..
T Consensus       111 i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~~~~---g~~~~i~~  180 (334)
T PRK13684        111 LLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVEDAA---GVVRNLRR  180 (334)
T ss_pred             EEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCcCCCc---ceEEEEEE
Confidence            44444445699988532 2222333344443 446665532       235665556789998754322   23344454


Q ss_pred             eCCEEEEEeceeCCCCCCCCceEEE-EECCCCCeEeCCCCCCCCCCceEEE-ECCEEEEEccCCCCCCCCCcceEEeeee
Q 016413          177 DGRYIYIVSGQYGPQCRGPTSRTFV-LDSETRKWDSIPPLPSPRYSPATQL-WRGRLHVMGGSKENRHTPGLEHWSIAVK  254 (390)
Q Consensus       177 ~~~~iyv~GG~~~~~~~~~~~~v~~-yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~  254 (390)
                      ..+..|++.|..+        .++. .|....+|+.+.. +..+...+++. -+++++++|....       ..+..   
T Consensus       181 ~~~g~~v~~g~~G--------~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~G~-------~~~~s---  241 (334)
T PRK13684        181 SPDGKYVAVSSRG--------NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARGGQ-------IRFND---  241 (334)
T ss_pred             CCCCeEEEEeCCc--------eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecCCE-------EEEcc---
Confidence            4444455444322        2232 2444567998853 44444444443 4678888874321       11100   


Q ss_pred             ccccccCCeEEccCC-CCCCC-ceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEe-eCCCCCeEECC
Q 016413          255 DGKALEKAWRTEIPI-PRGGP-HRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYM-LDDEMKWKVLP  330 (390)
Q Consensus       255 ~~~~~~~~W~~~~~~-p~~~~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-yd~~~~W~~~~  330 (390)
                        +....+|+.+... ..... .++++.. ++.+|++|....                       ++. .|...+|+.++
T Consensus       242 --~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~-----------------------v~~S~d~G~tW~~~~  296 (334)
T PRK13684        242 --PDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGT-----------------------LLVSKDGGKTWEKDP  296 (334)
T ss_pred             --CCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCe-----------------------EEEeCCCCCCCeECC
Confidence              0245688865321 11111 1233333 567888776421                       333 33567999975


Q ss_pred             CC-CCCCCcceeEEEEECCEEEEEcCC
Q 016413          331 PM-PKPNSHIECAWVIVNNSIIITGGT  356 (390)
Q Consensus       331 ~~-~~~~~~~~~~~~~~~~~l~v~GG~  356 (390)
                      .. ..+.... ..+...++++++.|..
T Consensus       297 ~~~~~~~~~~-~~~~~~~~~~~~~G~~  322 (334)
T PRK13684        297 VGEEVPSNFY-KIVFLDPEKGFVLGQR  322 (334)
T ss_pred             cCCCCCcceE-EEEEeCCCceEEECCC
Confidence            32 2222211 2223446777777653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=95.88  E-value=1.7  Score=41.35  Aligned_cols=133  Identities=17%  Similarity=0.186  Sum_probs=70.3

Q ss_pred             ceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCc--eeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceE
Q 016413          122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRT  199 (390)
Q Consensus       122 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v  199 (390)
                      .+.++.+++||+.+..       ..+.++|+.+.+  |+.-  ++.   +...+.++.++.+|+...         ...+
T Consensus        59 ~~p~v~~~~v~v~~~~-------g~v~a~d~~tG~~~W~~~--~~~---~~~~~p~v~~~~v~v~~~---------~g~l  117 (377)
T TIGR03300        59 LQPAVAGGKVYAADAD-------GTVVALDAETGKRLWRVD--LDE---RLSGGVGADGGLVFVGTE---------KGEV  117 (377)
T ss_pred             cceEEECCEEEEECCC-------CeEEEEEccCCcEeeeec--CCC---CcccceEEcCCEEEEEcC---------CCEE
Confidence            3446668888886532       248999987654  8653  222   112234556788886432         3468


Q ss_pred             EEEECCCC--CeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCC--CCCc
Q 016413          200 FVLDSETR--KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPR--GGPH  275 (390)
Q Consensus       200 ~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~--~~~~  275 (390)
                      +.+|+.+.  .|+.-.+  .. ...+.++.++.+|+..+      ...+..+|..     .....|+.....+.  .+..
T Consensus       118 ~ald~~tG~~~W~~~~~--~~-~~~~p~v~~~~v~v~~~------~g~l~a~d~~-----tG~~~W~~~~~~~~~~~~~~  183 (377)
T TIGR03300       118 IALDAEDGKELWRAKLS--SE-VLSPPLVANGLVVVRTN------DGRLTALDAA-----TGERLWTYSRVTPALTLRGS  183 (377)
T ss_pred             EEEECCCCcEeeeeccC--ce-eecCCEEECCEEEEECC------CCeEEEEEcC-----CCceeeEEccCCCceeecCC
Confidence            89998654  4876432  11 11233456788777543      1234444421     23446876433221  1112


Q ss_pred             eeEEEECCEEEEEcC
Q 016413          276 RACFVFNDRLFVVGG  290 (390)
Q Consensus       276 ~~~~~~~~~iyv~GG  290 (390)
                      .+.+..++.+| +|.
T Consensus       184 ~sp~~~~~~v~-~~~  197 (377)
T TIGR03300       184 ASPVIADGGVL-VGF  197 (377)
T ss_pred             CCCEEECCEEE-EEC
Confidence            24455666554 444

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=95.74  E-value=0.27  Score=44.59  Aligned_cols=121  Identities=16%  Similarity=0.188  Sum_probs=69.0

Q ss_pred             EEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEE-CCEEEEEccCCCCC-CCCCcceEEeeeeccccc
Q 016413          182 YIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGGSKENR-HTPGLEHWSIAVKDGKAL  259 (390)
Q Consensus       182 yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~-~~~~~~~~~~~~~~~~~~  259 (390)
                      ||-|-++..+. -++..+..||+.+.+|..+..--.+ .-.++... +++||+.|-..... .....-.|+       ..
T Consensus         2 ~VGG~F~~aGs-L~C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd-------~~   72 (281)
T PF12768_consen    2 YVGGSFTSAGS-LPCPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYD-------FK   72 (281)
T ss_pred             EEeeecCCCCC-cCCCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEe-------cC
Confidence            44343443332 3578999999999999998743222 12233333 77888888654333 233344455       57


Q ss_pred             cCCeEEccC-----CCCCCCceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeCCCCCeEECCC
Q 016413          260 EKAWRTEIP-----IPRGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPP  331 (390)
Q Consensus       260 ~~~W~~~~~-----~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~  331 (390)
                      +.+|+.+..     +|.+......... .+.+++.|.....                   ..-+..| ...+|..+..
T Consensus        73 ~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g-------------------~~~l~~~-dGs~W~~i~~  130 (281)
T PF12768_consen   73 NQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG-------------------STFLMKY-DGSSWSSIGS  130 (281)
T ss_pred             CCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCC-------------------CceEEEE-cCCceEeccc
Confidence            999988765     3443321112222 3457777775221                   1237777 5558988865

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.56  E-value=1.5  Score=38.41  Aligned_cols=175  Identities=23%  Similarity=0.294  Sum_probs=94.4

Q ss_pred             eEEEEeCCCCc--eeecCCCCCCCCCcceE--EEEeCCEEEEEeceeCCCCCCCCceEEEEECCCC--CeEeCCCCCCCC
Q 016413          146 HVDVYNFTDNK--WVDRFDMPKDMAHSHLG--VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSIPPLPSPR  219 (390)
Q Consensus       146 ~v~~yd~~~~~--W~~~~~l~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r  219 (390)
                      .+.++|+.+.+  |+.  .+..+  .....  .+..++.+|+..+         ...+.++|+.+.  .|+.-.  +.+-
T Consensus         4 ~l~~~d~~tG~~~W~~--~~~~~--~~~~~~~~~~~~~~v~~~~~---------~~~l~~~d~~tG~~~W~~~~--~~~~   68 (238)
T PF13360_consen    4 TLSALDPRTGKELWSY--DLGPG--IGGPVATAVPDGGRVYVASG---------DGNLYALDAKTGKVLWRFDL--PGPI   68 (238)
T ss_dssp             EEEEEETTTTEEEEEE--ECSSS--CSSEEETEEEETTEEEEEET---------TSEEEEEETTTSEEEEEEEC--SSCG
T ss_pred             EEEEEECCCCCEEEEE--ECCCC--CCCccceEEEeCCEEEEEcC---------CCEEEEEECCCCCEEEEeec--cccc
Confidence            47788886654  765  22211  22222  4448899999842         567999998665  477654  2221


Q ss_pred             CCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeE-EccCCCC--CCCceeEEEECCEEEEEcCCCCCCC
Q 016413          220 YSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWR-TEIPIPR--GGPHRACFVFNDRLFVVGGQEGDFM  296 (390)
Q Consensus       220 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~-~~~~~p~--~~~~~~~~~~~~~iyv~GG~~~~~~  296 (390)
                      . ...+..++.||+....      ..+..++.     ......|+ .....+.  ........+.++.+|+... .    
T Consensus        69 ~-~~~~~~~~~v~v~~~~------~~l~~~d~-----~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----  131 (238)
T PF13360_consen   69 S-GAPVVDGGRVYVGTSD------GSLYALDA-----KTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-S----  131 (238)
T ss_dssp             G-SGEEEETTEEEEEETT------SEEEEEET-----TTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-C----
T ss_pred             c-ceeeecccccccccce------eeeEeccc-----CCcceeeeeccccccccccccccCceEecCEEEEEec-c----
Confidence            2 2247889999888621      13444442     13555788 4433222  1222344455677766653 2    


Q ss_pred             CCCCCCccccccccceecCcEEeeC-CCC--CeEECCCCCCCCC------cceeEEEEECCEEEEEcCCCCCCCcceeeE
Q 016413          297 AKPGSPIFKCSRRHEVVYGDVYMLD-DEM--KWKVLPPMPKPNS------HIECAWVIVNNSIIITGGTTEKHPMTKRMI  367 (390)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~v~~yd-~~~--~W~~~~~~~~~~~------~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~  367 (390)
                                        ..++.+| .+.  .|+.-...+....      ......+..++.+|+..+...         
T Consensus       132 ------------------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~---------  184 (238)
T PF13360_consen  132 ------------------GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR---------  184 (238)
T ss_dssp             ------------------SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS---------
T ss_pred             ------------------CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe---------
Confidence                              1389999 543  7877433332111      112333445678888765431         


Q ss_pred             EeeeEEEeecCccc--ee
Q 016413          368 LVGEVFQFHLDSLV--II  383 (390)
Q Consensus       368 ~~~~v~~yd~~~~~--W~  383 (390)
                          +..+|.++++  |+
T Consensus       185 ----~~~~d~~tg~~~w~  198 (238)
T PF13360_consen  185 ----VVAVDLATGEKLWS  198 (238)
T ss_dssp             ----EEEEETTTTEEEEE
T ss_pred             ----EEEEECCCCCEEEE
Confidence                3445777765  74

...

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=94.29  E-value=3.9  Score=36.80  Aligned_cols=141  Identities=15%  Similarity=0.096  Sum_probs=63.0

Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCCCc--hhHHHhhhcccccccCCCCeEE
Q 016413           34 FMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQ--DAERFLSATFADLPAPDLEWEQ  111 (390)
Q Consensus        34 ~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~W~~  111 (390)
                      .+|+.++. ++       .+..||+.+.+-...-.....     ..+++...+...  ... .....+..+|..+.+...
T Consensus         2 ~~~~s~~~-d~-------~v~~~d~~t~~~~~~~~~~~~-----~~~l~~~~dg~~l~~~~-~~~~~v~~~d~~~~~~~~   67 (300)
T TIGR03866         2 KAYVSNEK-DN-------TISVIDTATLEVTRTFPVGQR-----PRGITLSKDGKLLYVCA-SDSDTIQVIDLATGEVIG   67 (300)
T ss_pred             cEEEEecC-CC-------EEEEEECCCCceEEEEECCCC-----CCceEECCCCCEEEEEE-CCCCeEEEEECCCCcEEE
Confidence            56777766 55       788888876653222111111     112222211110  011 112356677776655433


Q ss_pred             -CCCCCCcCCCceEEEE--CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEece
Q 016413          112 -MPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQ  187 (390)
Q Consensus       112 -~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~  187 (390)
                       ++....+   ..++..  ++.+|+.++.+      ..+..||+.+.+-  +..++..  ....+++. -++.+++++..
T Consensus        68 ~~~~~~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~--~~~~~~~--~~~~~~~~~~dg~~l~~~~~  134 (300)
T TIGR03866        68 TLPSGPDP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKV--LAEIPVG--VEPEGMAVSPDGKIVVNTSE  134 (300)
T ss_pred             eccCCCCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeE--EeEeeCC--CCcceEEECCCCCEEEEEec
Confidence             2221111   122222  34566665433      3588899987542  2222211  11122332 35666666542


Q ss_pred             eCCCCCCCCceEEEEECCCCC
Q 016413          188 YGPQCRGPTSRTFVLDSETRK  208 (390)
Q Consensus       188 ~~~~~~~~~~~v~~yd~~~~~  208 (390)
                      +       .+.+..||..+.+
T Consensus       135 ~-------~~~~~~~d~~~~~  148 (300)
T TIGR03866       135 T-------TNMAHFIDTKTYE  148 (300)
T ss_pred             C-------CCeEEEEeCCCCe
Confidence            2       1235567776543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=94.24  E-value=1.4  Score=41.89  Aligned_cols=147  Identities=8%  Similarity=0.055  Sum_probs=80.0

Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCCCc--hhHHHhhhcccccccCCCCeEE
Q 016413           34 FMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQ--DAERFLSATFADLPAPDLEWEQ  111 (390)
Q Consensus        34 ~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~W~~  111 (390)
                      .|.+.+|. ++       .+..|..+.+.=..|.++...   +.....+....+|.  .+.......+|.||..+.+-.+
T Consensus       226 plllvaG~-d~-------~lrifqvDGk~N~~lqS~~l~---~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k  294 (514)
T KOG2055|consen  226 PLLLVAGL-DG-------TLRIFQVDGKVNPKLQSIHLE---KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK  294 (514)
T ss_pred             ceEEEecC-CC-------cEEEEEecCccChhheeeeec---cCccceeeecCCCceEEEecccceEEEEeecccccccc
Confidence            46778888 65       455554433333344443322   22222222222222  2333345578999998888777


Q ss_pred             CCCCC--CcCCCceE-EEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEecee
Q 016413          112 MPSAP--VPRLDGAA-IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQY  188 (390)
Q Consensus       112 ~~~~~--~~R~~~~~-~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~  188 (390)
                      +.++-  ..+..... +..++..+++-|..+      .+..+..+|+.|..  .+..+-.-...+....+..|++.||  
T Consensus       295 ~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli~--s~KieG~v~~~~fsSdsk~l~~~~~--  364 (514)
T KOG2055|consen  295 LKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELIT--SFKIEGVVSDFTFSSDSKELLASGG--  364 (514)
T ss_pred             ccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhhh--eeeeccEEeeEEEecCCcEEEEEcC--
Confidence            76643  12222222 334555666666553      36777778888853  3433222334444455667888887  


Q ss_pred             CCCCCCCCceEEEEECCCCC
Q 016413          189 GPQCRGPTSRTFVLDSETRK  208 (390)
Q Consensus       189 ~~~~~~~~~~v~~yd~~~~~  208 (390)
                             ...|+++|+.++.
T Consensus       365 -------~GeV~v~nl~~~~  377 (514)
T KOG2055|consen  365 -------TGEVYVWNLRQNS  377 (514)
T ss_pred             -------CceEEEEecCCcc
Confidence                   4569999998874

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.06  E-value=2.6  Score=40.29  Aligned_cols=175  Identities=11%  Similarity=0.145  Sum_probs=87.1

Q ss_pred             ECCEEEEEecCCCCCCCCCeEEEEeCCCCcee-ecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECC
Q 016413          127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWV-DRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (390)
Q Consensus       127 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  205 (390)
                      .++.+++.|+-+.      .+-.+|..+..=+ .+..-..- -| +.++...++.|++.||+++.        +-.||..
T Consensus       121 ~d~t~l~s~sDd~------v~k~~d~s~a~v~~~l~~htDY-VR-~g~~~~~~~hivvtGsYDg~--------vrl~DtR  184 (487)
T KOG0310|consen  121 QDNTMLVSGSDDK------VVKYWDLSTAYVQAELSGHTDY-VR-CGDISPANDHIVVTGSYDGK--------VRLWDTR  184 (487)
T ss_pred             cCCeEEEecCCCc------eEEEEEcCCcEEEEEecCCcce-eE-eeccccCCCeEEEecCCCce--------EEEEEec
Confidence            4788999887553      1333444444421 11111111 13 22445567889999999764        5567877


Q ss_pred             CC-CeEeCCCCCCCCCCceEEEE-C-CEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEE--E
Q 016413          206 TR-KWDSIPPLPSPRYSPATQLW-R-GRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACF--V  280 (390)
Q Consensus       206 ~~-~W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~--~  280 (390)
                      .. .|..  .+..+----.++.+ + ..|...||       +.+.+||+.      ..++  .+..+-.-.-.-++-  .
T Consensus       185 ~~~~~v~--elnhg~pVe~vl~lpsgs~iasAgG-------n~vkVWDl~------~G~q--ll~~~~~H~KtVTcL~l~  247 (487)
T KOG0310|consen  185 SLTSRVV--ELNHGCPVESVLALPSGSLIASAGG-------NSVKVWDLT------TGGQ--LLTSMFNHNKTVTCLRLA  247 (487)
T ss_pred             cCCceeE--EecCCCceeeEEEcCCCCEEEEcCC-------CeEEEEEec------CCce--ehhhhhcccceEEEEEee
Confidence            66 3432  22211111122223 2 34555555       468888872      1221  111111100001221  2


Q ss_pred             ECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeCCCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCC
Q 016413          281 FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTE  358 (390)
Q Consensus       281 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~  358 (390)
                      -++.=++-||.++.                      |-+|| ...|+.+-.+..|-.-.+++ +.-++.-+++|..++
T Consensus       248 s~~~rLlS~sLD~~----------------------VKVfd-~t~~Kvv~s~~~~~pvLsia-vs~dd~t~viGmsnG  301 (487)
T KOG0310|consen  248 SDSTRLLSGSLDRH----------------------VKVFD-TTNYKVVHSWKYPGPVLSIA-VSPDDQTVVIGMSNG  301 (487)
T ss_pred             cCCceEeecccccc----------------------eEEEE-ccceEEEEeeecccceeeEE-ecCCCceEEEecccc
Confidence            24566778887764                      88886 45666666444333323333 444677777776554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=93.82  E-value=3.6  Score=39.20  Aligned_cols=138  Identities=14%  Similarity=0.118  Sum_probs=72.3

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCC-CCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKD-MAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  207 (390)
                      -.+.+.+|.+..    -.++..|-++|.  .+.++-.. .+-..+..+..+....+++|.        ..-++.||.++.
T Consensus       225 ~plllvaG~d~~----lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r--------rky~ysyDle~a  290 (514)
T KOG2055|consen  225 APLLLVAGLDGT----LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR--------RKYLYSYDLETA  290 (514)
T ss_pred             CceEEEecCCCc----EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc--------ceEEEEeecccc
Confidence            468999999863    347777777776  34433220 111222223334436666664        355789999999


Q ss_pred             CeEeCCCCCC--CCCCce-EEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCE
Q 016413          208 KWDSIPPLPS--PRYSPA-TQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDR  284 (390)
Q Consensus       208 ~W~~~~~~p~--~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~  284 (390)
                      +-+++.++-.  .+.... .+...+.+.++-|..+.     +....       ..++.|-.-..++-..........+.+
T Consensus       291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~-----I~lLh-------akT~eli~s~KieG~v~~~~fsSdsk~  358 (514)
T KOG2055|consen  291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH-----IHLLH-------AKTKELITSFKIEGVVSDFTFSSDSKE  358 (514)
T ss_pred             ccccccCCCCcccchhheeEecCCCCeEEEcccCce-----EEeeh-------hhhhhhhheeeeccEEeeEEEecCCcE
Confidence            8888875431  112222 23445556666665432     11111       345555444344433222223333455


Q ss_pred             EEEEcCCC
Q 016413          285 LFVVGGQE  292 (390)
Q Consensus       285 iyv~GG~~  292 (390)
                      |+++||..
T Consensus       359 l~~~~~~G  366 (514)
T KOG2055|consen  359 LLASGGTG  366 (514)
T ss_pred             EEEEcCCc
Confidence            77777753

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=93.60  E-value=5.3  Score=35.92  Aligned_cols=67  Identities=15%  Similarity=0.242  Sum_probs=37.1

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK  208 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  208 (390)
                      +++|+.++.++      .+.+||+.+++-...-..... .+ ..+....+..+|+.++.        ...+..||..+.+
T Consensus         1 ~~~~~s~~~d~------~v~~~d~~t~~~~~~~~~~~~-~~-~l~~~~dg~~l~~~~~~--------~~~v~~~d~~~~~   64 (300)
T TIGR03866         1 EKAYVSNEKDN------TISVIDTATLEVTRTFPVGQR-PR-GITLSKDGKLLYVCASD--------SDTIQVIDLATGE   64 (300)
T ss_pred             CcEEEEecCCC------EEEEEECCCCceEEEEECCCC-CC-ceEECCCCCEEEEEECC--------CCeEEEEECCCCc
Confidence            35777777553      588899887764332221111 12 11222234457777642        3558889988776


Q ss_pred             eEe
Q 016413          209 WDS  211 (390)
Q Consensus       209 W~~  211 (390)
                      ...
T Consensus        65 ~~~   67 (300)
T TIGR03866        65 VIG   67 (300)
T ss_pred             EEE
Confidence            543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=93.10  E-value=5.6  Score=34.75  Aligned_cols=22  Identities=9%  Similarity=0.182  Sum_probs=14.2

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCc
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNK  156 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~  156 (390)
                      +++++.++.+      ..+..||+.+.+
T Consensus       105 ~~~~~~~~~~------~~i~~~~~~~~~  126 (289)
T cd00200         105 GRILSSSSRD------KTIKVWDVETGK  126 (289)
T ss_pred             CCEEEEecCC------CeEEEEECCCcE
Confidence            4666666633      358889987544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=92.67  E-value=1.3  Score=39.33  Aligned_cols=104  Identities=13%  Similarity=0.109  Sum_probs=58.0

Q ss_pred             hcccccccCCCCeEECCCCCCcCCCceEEEE--CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCC---CCCCcc
Q 016413           97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK---DMAHSH  171 (390)
Q Consensus        97 ~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~---~~~r~~  171 (390)
                      ..++.+++.+.+-..+. .+.   ..+++..  ++++|+....        .+..+|+.+.+++.+...+.   +..+.+
T Consensus        22 ~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g~~~~~~~~~~~~~~~~~~N   89 (246)
T PF08450_consen   22 GRIYRVDPDTGEVEVID-LPG---PNGMAFDRPDGRLYVADSG--------GIAVVDPDTGKVTVLADLPDGGVPFNRPN   89 (246)
T ss_dssp             TEEEEEETTTTEEEEEE-SSS---EEEEEEECTTSEEEEEETT--------CEEEEETTTTEEEEEEEEETTCSCTEEEE
T ss_pred             CEEEEEECCCCeEEEEe-cCC---CceEEEEccCCEEEEEEcC--------ceEEEecCCCcEEEEeeccCCCcccCCCc
Confidence            36777777666443321 222   2334444  6788887542        25666999999988766531   223445


Q ss_pred             eEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC
Q 016413          172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP  213 (390)
Q Consensus       172 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~  213 (390)
                      -.++.-+|.||+.--............++++++. .+.+.+.
T Consensus        90 D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~  130 (246)
T PF08450_consen   90 DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA  130 (246)
T ss_dssp             EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE
T ss_pred             eEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe
Confidence            4555567888886432221110111679999998 5555543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=92.25  E-value=4.6  Score=35.75  Aligned_cols=86  Identities=16%  Similarity=0.119  Sum_probs=50.7

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE--eCCEEEEEeceeCCCCCCCCceEEEEECC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  205 (390)
                      ++.||+.--.      ...++++|+.+.+-+.+. ++.     ..+++.  .++.+|+...          ..+.++|+.
T Consensus        11 ~g~l~~~D~~------~~~i~~~~~~~~~~~~~~-~~~-----~~G~~~~~~~g~l~v~~~----------~~~~~~d~~   68 (246)
T PF08450_consen   11 DGRLYWVDIP------GGRIYRVDPDTGEVEVID-LPG-----PNGMAFDRPDGRLYVADS----------GGIAVVDPD   68 (246)
T ss_dssp             TTEEEEEETT------TTEEEEEETTTTEEEEEE-SSS-----EEEEEEECTTSEEEEEET----------TCEEEEETT
T ss_pred             CCEEEEEEcC------CCEEEEEECCCCeEEEEe-cCC-----CceEEEEccCCEEEEEEc----------CceEEEecC
Confidence            4677877221      257999999998765532 222     223333  4788888763          234566999


Q ss_pred             CCCeEeCCCCCC-----CCCCceEEEECCEEEEEc
Q 016413          206 TRKWDSIPPLPS-----PRYSPATQLWRGRLHVMG  235 (390)
Q Consensus       206 ~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv~G  235 (390)
                      +.+++.+...+.     .+..-.++--++.||+-.
T Consensus        69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~  103 (246)
T PF08450_consen   69 TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTD  103 (246)
T ss_dssp             TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEE
T ss_pred             CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEe
Confidence            999988875532     222222334477888864

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04922 tolB translocation protein TolB; Provisional

Probab=91.92  E-value=13  Score=36.17  Aligned_cols=62  Identities=15%  Similarity=0.216  Sum_probs=38.1

Q ss_pred             CeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC
Q 016413          145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP  214 (390)
Q Consensus       145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~  214 (390)
                      ..++++|+.+++-+.+...+.  ..........+.+|++....++      ..+++++|+.+..-+.+..
T Consensus       228 ~~l~~~dl~~g~~~~l~~~~g--~~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~~~~lt~  289 (433)
T PRK04922        228 SAIYVQDLATGQRELVASFRG--INGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQLTRLTN  289 (433)
T ss_pred             cEEEEEECCCCCEEEeccCCC--CccCceECCCCCEEEEEEeCCC------CceEEEEECCCCCeEECcc
Confidence            469999999888777765543  1222223333455655432221      3579999999887776653

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=91.92  E-value=10  Score=34.91  Aligned_cols=195  Identities=11%  Similarity=0.116  Sum_probs=82.0

Q ss_pred             CCCceEeecCCCCCccccccceEEEecCC-CchhHHHhhhcccccccCCCCeEECCC-CCCc-CC-CceEEEECCEEEEE
Q 016413           59 EKSGVVVIPHVNATKIDRQRESVAVIDKK-GQDAERFLSATFADLPAPDLEWEQMPS-APVP-RL-DGAAIQIKNLFYVF  134 (390)
Q Consensus        59 ~~~~W~~l~~~~~~p~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~-R~-~~~~~~~~~~lyv~  134 (390)
                      ..+.|..+..-...    .-..+...... +.....  ...++.-.-...+|+.... .+.+ .. ..++...++..|++
T Consensus         4 ~~~~W~~v~l~t~~----~l~dV~F~d~~~G~~VG~--~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~iv   77 (302)
T PF14870_consen    4 SGNSWQQVSLPTDK----PLLDVAFVDPNHGWAVGA--YGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIV   77 (302)
T ss_dssp             SS--EEEEE-S-SS-----EEEEEESSSS-EEEEET--TTEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEE
T ss_pred             cCCCcEEeecCCCC----ceEEEEEecCCEEEEEec--CCEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEE
Confidence            45678887753322    22333333222 222111  1245554455679998764 2222 22 23344457889988


Q ss_pred             ecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceE-EEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC
Q 016413          135 AGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG-VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP  213 (390)
Q Consensus       135 GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~  213 (390)
                      |-..       -+.+-.-...+|+.++- +.+.+...+. .+.-++.+.++|.         ...+++-.-.-.+|+.+.
T Consensus        78 G~~g-------~ll~T~DgG~tW~~v~l-~~~lpgs~~~i~~l~~~~~~l~~~---------~G~iy~T~DgG~tW~~~~  140 (302)
T PF14870_consen   78 GEPG-------LLLHTTDGGKTWERVPL-SSKLPGSPFGITALGDGSAELAGD---------RGAIYRTTDGGKTWQAVV  140 (302)
T ss_dssp             EETT-------EEEEESSTTSS-EE-----TT-SS-EEEEEEEETTEEEEEET---------T--EEEESSTTSSEEEEE
T ss_pred             cCCc-------eEEEecCCCCCcEEeec-CCCCCCCeeEEEEcCCCcEEEEcC---------CCcEEEeCCCCCCeeEcc
Confidence            7421       24444446789999752 1111222333 3445667777763         244666666677899875


Q ss_pred             CCCCCCCCceEEEE-CCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEc
Q 016413          214 PLPSPRYSPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVG  289 (390)
Q Consensus       214 ~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~G  289 (390)
                      .-... ....+... ++++++++ ..+.    ....++       |....|.........|.......-++.|+++.
T Consensus       141 ~~~~g-s~~~~~r~~dG~~vavs-~~G~----~~~s~~-------~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~  204 (302)
T PF14870_consen  141 SETSG-SINDITRSSDGRYVAVS-SRGN----FYSSWD-------PGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA  204 (302)
T ss_dssp             -S-----EEEEEE-TTS-EEEEE-TTSS----EEEEE--------TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE
T ss_pred             cCCcc-eeEeEEECCCCcEEEEE-Cccc----EEEEec-------CCCccceEEccCccceehhceecCCCCEEEEe
Confidence            42221 22223333 45555454 3221    112233       56677988765544554444455577887765

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=91.39  E-value=2.4  Score=39.35  Aligned_cols=140  Identities=17%  Similarity=0.130  Sum_probs=76.2

Q ss_pred             CEEEEEece-eCCCCCCCC-ceEEEEECCCC-----CeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEe
Q 016413          179 RYIYIVSGQ-YGPQCRGPT-SRTFVLDSETR-----KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       179 ~~iyv~GG~-~~~~~~~~~-~~v~~yd~~~~-----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      ...+++|-. .......+. ..+..|+..+.     +.+.+......-.-.+++.++++|.+.-|       ..+..|++
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l  114 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDL  114 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEc
Confidence            467777743 222221223 77999998885     56666544444445677788999777665       34566665


Q ss_pred             eeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeCC-CCCeEECC
Q 016413          252 AVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDD-EMKWKVLP  330 (390)
Q Consensus       252 ~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~-~~~W~~~~  330 (390)
                      .      .+.++.....+..+-...+..+.++.|++---..+-                     .++.|++ ..+-..++
T Consensus       115 ~------~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv---------------------~~~~~~~~~~~l~~va  167 (321)
T PF03178_consen  115 D------NSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSV---------------------SLLRYDEENNKLILVA  167 (321)
T ss_dssp             E------TTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSE---------------------EEEEEETTTE-EEEEE
T ss_pred             c------CcccchhhheecceEEEEEEeccccEEEEEEcccCE---------------------EEEEEEccCCEEEEEE
Confidence            2      223477776655554556777888877655433332                     1556773 44566666


Q ss_pred             CCCCCCCcceeEEEEE-CCEEEEEc
Q 016413          331 PMPKPNSHIECAWVIV-NNSIIITG  354 (390)
Q Consensus       331 ~~~~~~~~~~~~~~~~-~~~l~v~G  354 (390)
                      .-..++.-.  ++..+ ++..++++
T Consensus       168 ~d~~~~~v~--~~~~l~d~~~~i~~  190 (321)
T PF03178_consen  168 RDYQPRWVT--AAEFLVDEDTIIVG  190 (321)
T ss_dssp             EESS-BEEE--EEEEE-SSSEEEEE
T ss_pred             ecCCCccEE--EEEEecCCcEEEEE
Confidence            544444422  23344 55533333

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>smart00284 OLF Olfactomedin-like domains

Probab=90.46  E-value=12  Score=33.30  Aligned_cols=185  Identities=16%  Similarity=0.149  Sum_probs=98.3

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeC----CCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEE
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNF----TDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD  203 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~----~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd  203 (390)
                      ++++|++-+....   .+.++.|.-    ....+...-.||.  +-.+.+.++.+|.+|.--.        ....+-+||
T Consensus        34 ~~~~wv~~~~~~~---~~~v~ey~~~~~f~~~~~~~~~~Lp~--~~~GtG~VVYngslYY~~~--------~s~~iiKyd  100 (255)
T smart00284       34 KSLYWYMPLNTRV---LRSVREYSSMSDFQMGKNPTDHPLPH--AGQGTGVVVYNGSLYFNKF--------NSHDICRFD  100 (255)
T ss_pred             CceEEEEccccCC---CcEEEEecCHHHHhccCCceEEECCC--ccccccEEEECceEEEEec--------CCccEEEEE
Confidence            4689998765421   244666642    2333433334555  3567778889999998432        257799999


Q ss_pred             CCCCCeEeCCCCCCC------------CCCceEEEECCEEEEEccCCCCC---CCCCcceEEeeeeccccccCCeEEccC
Q 016413          204 SETRKWDSIPPLPSP------------RYSPATQLWRGRLHVMGGSKENR---HTPGLEHWSIAVKDGKALEKAWRTEIP  268 (390)
Q Consensus       204 ~~~~~W~~~~~~p~~------------r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~~~~~~~~~~~~~~W~~~~~  268 (390)
                      +.+.+=.....+|.+            -...-.++-++-|+|+=......   ...+++..++.      -..+|..  +
T Consensus       101 L~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~------ve~tW~T--~  172 (255)
T smart00284      101 LTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLT------IENTWIT--T  172 (255)
T ss_pred             CCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccce------EEEEEEc--C
Confidence            999875433333322            11233566677788885443221   11122222221      2456766  3


Q ss_pred             CCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEE-
Q 016413          269 IPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIV-  346 (390)
Q Consensus       269 ~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~-  346 (390)
                      .++...+ .++++=|.||++-......                  ..-.+.|| .+.+ +....+|.+......+++.. 
T Consensus       173 ~~k~sa~-naFmvCGvLY~~~s~~~~~------------------~~I~yayDt~t~~-~~~~~i~f~n~y~~~s~l~YN  232 (255)
T smart00284      173 YNKRSAS-NAFMICGILYVTRSLGSKG------------------EKVFYAYDTNTGK-EGHLDIPFENMYEYISMLDYN  232 (255)
T ss_pred             CCccccc-ccEEEeeEEEEEccCCCCC------------------cEEEEEEECCCCc-cceeeeeeccccccceeceeC
Confidence            3433332 4566667899986422110                  11267898 5543 23334554444333333433 


Q ss_pred             --CCEEEEE
Q 016413          347 --NNSIIIT  353 (390)
Q Consensus       347 --~~~l~v~  353 (390)
                        +.+||+.
T Consensus       233 P~d~~LY~w  241 (255)
T smart00284      233 PNDRKLYAW  241 (255)
T ss_pred             CCCCeEEEE
Confidence              5778876

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=90.44  E-value=15  Score=34.11  Aligned_cols=101  Identities=11%  Similarity=0.044  Sum_probs=49.8

Q ss_pred             EEEEEecCCCCCCCCCeEEEEeCCC-CceeecCCCCCCCCCcceEEEE--eCCEEEEEeceeCCCCCCCCceEEEEECC-
Q 016413          130 LFYVFAGYGSLDYVHSHVDVYNFTD-NKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSE-  205 (390)
Q Consensus       130 ~lyv~GG~~~~~~~~~~v~~yd~~~-~~W~~~~~l~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~-  205 (390)
                      ++|+..+.+      ..+..||..+ .+++.+..++..  .....++.  .+..||+.+..        ...+..|+.. 
T Consensus         3 ~~y~~~~~~------~~I~~~~~~~~g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~--------~~~i~~~~~~~   66 (330)
T PRK11028          3 IVYIASPES------QQIHVWNLNHEGALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRP--------EFRVLSYRIAD   66 (330)
T ss_pred             EEEEEcCCC------CCEEEEEECCCCceeeeeEEecC--CCCccEEECCCCCEEEEEECC--------CCcEEEEEECC
Confidence            578875543      3477788754 467666555432  11222333  34567775431        2446666665 


Q ss_pred             CCCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          206 TRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       206 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      +.+++.+...+.+..-+.++..  +..||+..- .    ...+..|++
T Consensus        67 ~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~-~----~~~v~v~~~  109 (330)
T PRK11028         67 DGALTFAAESPLPGSPTHISTDHQGRFLFSASY-N----ANCVSVSPL  109 (330)
T ss_pred             CCceEEeeeecCCCCceEEEECCCCCEEEEEEc-C----CCeEEEEEE
Confidence            4567655543332222222222  345666642 1    234555654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.21  E-value=18  Score=34.76  Aligned_cols=98  Identities=9%  Similarity=0.030  Sum_probs=50.5

Q ss_pred             ccccccCCCCeEECCC-C-C-CcC--CCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceE
Q 016413           99 FADLPAPDLEWEQMPS-A-P-VPR--LDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG  173 (390)
Q Consensus        99 ~~~~~~~~~~W~~~~~-~-~-~~R--~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~  173 (390)
                      +..-+-..++|++... . . ..+  ...++...++..|++|-. +      .+..=+-..++|+.++..+.........
T Consensus       112 IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~-G------~il~T~DgG~tW~~~~~~~~~p~~~~~i  184 (398)
T PLN00033        112 LLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP-A------ILLHTSDGGETWERIPLSPKLPGEPVLI  184 (398)
T ss_pred             EEEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCc-e------EEEEEcCCCCCceECccccCCCCCceEE
Confidence            4444445678988532 1 1 111  234445557788887532 1      1333333568999875432211122222


Q ss_pred             EEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeC
Q 016413          174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI  212 (390)
Q Consensus       174 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~  212 (390)
                      .+.-++.++++|.         ...+++-+-...+|+.+
T Consensus       185 ~~~~~~~~~ivg~---------~G~v~~S~D~G~tW~~~  214 (398)
T PLN00033        185 KATGPKSAEMVTD---------EGAIYVTSNAGRNWKAA  214 (398)
T ss_pred             EEECCCceEEEec---------cceEEEECCCCCCceEc
Confidence            2233456777773         23366665566789987

>PRK00178 tolB translocation protein TolB; Provisional

Probab=90.03  E-value=19  Score=34.83  Aligned_cols=62  Identities=15%  Similarity=0.210  Sum_probs=37.3

Q ss_pred             CeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC
Q 016413          145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP  214 (390)
Q Consensus       145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~  214 (390)
                      ..++++|+.+.+-+.+...+..  -........+.+|++..-.++      ..+++++|..+...+.+..
T Consensus       223 ~~l~~~~l~~g~~~~l~~~~g~--~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~  284 (430)
T PRK00178        223 PRIFVQNLDTGRREQITNFEGL--NGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQLSRVTN  284 (430)
T ss_pred             CEEEEEECCCCCEEEccCCCCC--cCCeEECCCCCEEEEEEccCC------CceEEEEECCCCCeEEccc
Confidence            4699999998887776554321  112222223445554332111      3679999999998887764

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.96  E-value=19  Score=34.62  Aligned_cols=51  Identities=16%  Similarity=0.260  Sum_probs=28.1

Q ss_pred             ccCCCCeEECCCCC-CcCCCceEEEEC-CEEEEEecCCCCCCCCCeEEEEeCCCCceeec
Q 016413          103 PAPDLEWEQMPSAP-VPRLDGAAIQIK-NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDR  160 (390)
Q Consensus       103 ~~~~~~W~~~~~~~-~~R~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~  160 (390)
                      .-..++|+.++..+ .+-.......++ +.++++|...       .+++=+-...+|+.+
T Consensus       162 ~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~G-------~v~~S~D~G~tW~~~  214 (398)
T PLN00033        162 SDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDEG-------AIYVTSNAGRNWKAA  214 (398)
T ss_pred             cCCCCCceECccccCCCCCceEEEEECCCceEEEeccc-------eEEEECCCCCCceEc
Confidence            33457999876422 122223333343 4577776322       256655567899876

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=89.89  E-value=14  Score=33.00  Aligned_cols=184  Identities=12%  Similarity=0.072  Sum_probs=98.3

Q ss_pred             hccEEEEecCCCCCCCccccceeeeec----c-CCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccC
Q 016413           31 IADFMWASSSSSFSSSSAHLSVASNWA----L-EKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAP  105 (390)
Q Consensus        31 ~~~~l~~~GG~~~~~~~~~~~~~~~~d----~-~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (390)
                      -.+++|++.+. .+  .    .+..|.    . ..++..+.-.++.+   -.+.+-++..+.-.-... -+..+.+||..
T Consensus        29 ~~~~iy~~~~~-~~--~----~v~ey~~~~~f~~~~~~~~~~~Lp~~---~~GtG~vVYngslYY~~~-~s~~IvkydL~   97 (250)
T PF02191_consen   29 DSEKIYVTSGF-SG--N----TVYEYRNYEDFLRNGRSSRTYKLPYP---WQGTGHVVYNGSLYYNKY-NSRNIVKYDLT   97 (250)
T ss_pred             CCCCEEEECcc-CC--C----EEEEEcCHhHHhhcCCCceEEEEece---eccCCeEEECCcEEEEec-CCceEEEEECc
Confidence            46788999887 32  2    344442    2 23333332223333   445566666555222222 23378889988


Q ss_pred             CCC---eEECCCCCC---------cCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCC----CceeecCCCCCCCCC
Q 016413          106 DLE---WEQMPSAPV---------PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTD----NKWVDRFDMPKDMAH  169 (390)
Q Consensus       106 ~~~---W~~~~~~~~---------~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~----~~W~~~~~l~~~~~r  169 (390)
                      +++   +..|+....         +-...-.++-++-|+|+-........ --|-+.||.+    ++|..  ..+.  +.
T Consensus        98 t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~-ivvskld~~tL~v~~tw~T--~~~k--~~  172 (250)
T PF02191_consen   98 TRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN-IVVSKLDPETLSVEQTWNT--SYPK--RS  172 (250)
T ss_pred             CCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCc-EEEEeeCcccCceEEEEEe--ccCc--hh
Confidence            874   444543211         11123334446679998776554421 2255566653    46764  3443  22


Q ss_pred             cceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC-CCCCCCCCceEEEE---CCEEEEEc
Q 016413          170 SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQLW---RGRLHVMG  235 (390)
Q Consensus       170 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~~iyv~G  235 (390)
                      ... +-++-|.||++-..+...    ..-.+.||..+++=+.+. +.+.+-..++++..   +.+||+.-
T Consensus       173 ~~n-aFmvCGvLY~~~s~~~~~----~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd  237 (250)
T PF02191_consen  173 AGN-AFMVCGVLYATDSYDTRD----TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD  237 (250)
T ss_pred             hcc-eeeEeeEEEEEEECCCCC----cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence            233 334557899997654332    456789999988755433 33444445555544   57888883

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=89.84  E-value=17  Score=33.77  Aligned_cols=93  Identities=10%  Similarity=0.076  Sum_probs=41.8

Q ss_pred             cccccccC-CCCeEECCCCCCcCCCceEEEE-CC-EEEEEecCCCCCCCCCeEEEEeCCCCc--eeecCCCCCCCCCcce
Q 016413           98 TFADLPAP-DLEWEQMPSAPVPRLDGAAIQI-KN-LFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHL  172 (390)
Q Consensus        98 ~~~~~~~~-~~~W~~~~~~~~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~~r~~~  172 (390)
                      .+..|+.. ..+++.+...+.+..-..++.. ++ .||+.. ..     .+.+.+||+.++.  ...+..++.  ....|
T Consensus        58 ~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~  129 (330)
T PRK11028         58 RVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQIIEG--LEGCH  129 (330)
T ss_pred             cEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCceeeccC--CCccc
Confidence            45445443 3355544433322121223222 34 566653 22     1457777775431  122222222  11223


Q ss_pred             EEEEe--CCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          173 GVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       173 ~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      .+++.  +..+|+..-        ..+.+.+||..+
T Consensus       130 ~~~~~p~g~~l~v~~~--------~~~~v~v~d~~~  157 (330)
T PRK11028        130 SANIDPDNRTLWVPCL--------KEDRIRLFTLSD  157 (330)
T ss_pred             EeEeCCCCCEEEEeeC--------CCCEEEEEEECC
Confidence            34333  446776542        146788999876

>PRK04792 tolB translocation protein TolB; Provisional

Probab=89.72  E-value=21  Score=34.89  Aligned_cols=62  Identities=16%  Similarity=0.230  Sum_probs=39.0

Q ss_pred             CeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC
Q 016413          145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP  214 (390)
Q Consensus       145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~  214 (390)
                      ..++++|+.+.+-+.+...+.  .....+..-.+..|++....++      ..+++.+|..+.+.+.+..
T Consensus       242 ~~L~~~dl~tg~~~~lt~~~g--~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~~~~lt~  303 (448)
T PRK04792        242 AEIFVQDIYTQVREKVTSFPG--INGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKALTRITR  303 (448)
T ss_pred             cEEEEEECCCCCeEEecCCCC--CcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCCeEECcc
Confidence            469999998887766665543  1122333334455665543221      4679999999988887764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=89.56  E-value=15  Score=35.37  Aligned_cols=104  Identities=8%  Similarity=0.047  Sum_probs=56.5

Q ss_pred             ECCEEEEEecCCCCCCCCCeEEEEeCCCCc-eeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECC
Q 016413          127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNK-WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (390)
Q Consensus       127 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  205 (390)
                      .+++|+++|+..+      .|-+||.++.. -..+..-..|..+  --....++.++++|+-+.        .+..+|..
T Consensus        78 ~DG~LlaaGD~sG------~V~vfD~k~r~iLR~~~ah~apv~~--~~f~~~d~t~l~s~sDd~--------v~k~~d~s  141 (487)
T KOG0310|consen   78 SDGRLLAAGDESG------HVKVFDMKSRVILRQLYAHQAPVHV--TKFSPQDNTMLVSGSDDK--------VVKYWDLS  141 (487)
T ss_pred             cCCeEEEccCCcC------cEEEeccccHHHHHHHhhccCceeE--EEecccCCeEEEecCCCc--------eEEEEEcC
Confidence            3799999998764      48899955522 1112222222211  122347889999987432        23344554


Q ss_pred             CCCeE-eCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEe
Q 016413          206 TRKWD-SIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       206 ~~~W~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      +..=+ .+..-..-....+....++.|++-||++     ..+..||.
T Consensus       142 ~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD-----g~vrl~Dt  183 (487)
T KOG0310|consen  142 TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYD-----GKVRLWDT  183 (487)
T ss_pred             CcEEEEEecCCcceeEeeccccCCCeEEEecCCC-----ceEEEEEe
Confidence            44311 1111111122223446688899999986     46788885

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=89.23  E-value=4.7  Score=36.06  Aligned_cols=113  Identities=19%  Similarity=0.187  Sum_probs=69.9

Q ss_pred             cCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCC
Q 016413          160 RFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSK  238 (390)
Q Consensus       160 ~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  238 (390)
                      +...|....-+.-+... .++.+|.--|..+      .+.+.+||+.+.+=....++|..-++=.++.++++||.+-=.+
T Consensus        36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~  109 (264)
T PF05096_consen   36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYG------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKE  109 (264)
T ss_dssp             EEEEE--TT-EEEEEEEEETTEEEEEECSTT------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSS
T ss_pred             EEECCCCCcccCccEEecCCCEEEEeCCCCC------cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecC
Confidence            34444432233344555 6789999877654      5779999999988766667887777778899999999996432


Q ss_pred             CCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCC
Q 016413          239 ENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQE  292 (390)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~  292 (390)
                           ....+||       +  ++.+.+...+.+..+-+.+.-+.+|++--|.+
T Consensus       110 -----~~~f~yd-------~--~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~  149 (264)
T PF05096_consen  110 -----GTGFVYD-------P--NTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSS  149 (264)
T ss_dssp             -----SEEEEEE-------T--TTTEEEEEEE-SSS--EEEECSSCEEEE-SSS
T ss_pred             -----CeEEEEc-------c--ccceEEEEEecCCcceEEEcCCCEEEEECCcc
Confidence                 2344454       2  34555555444455567887788888887743

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>cd00094 HX Hemopexin-like repeats

Probab=88.88  E-value=14  Score=31.54  Aligned_cols=23  Identities=13%  Similarity=0.180  Sum_probs=17.3

Q ss_pred             EECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccc
Q 016413          345 IVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLV  381 (390)
Q Consensus       345 ~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~  381 (390)
                      ..++++|+|-|.              ..++||..+++
T Consensus       156 ~~~~~~yfF~g~--------------~y~~~d~~~~~  178 (194)
T cd00094         156 WLDGYYYFFKGD--------------QYWRFDPRSKE  178 (194)
T ss_pred             eCCCcEEEEECC--------------EEEEEeCccce
Confidence            334899999775              48899987765

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=88.77  E-value=17  Score=32.46  Aligned_cols=186  Identities=16%  Similarity=0.189  Sum_probs=101.0

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCC-----CCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEE
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFT-----DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL  202 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~-----~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y  202 (390)
                      .+++|++.+..+.     .++.|...     .+.....-.||.  +-.+.+.++.+|.+|---.        ..+.+.+|
T Consensus        30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~--~~~GtG~vVYngslYY~~~--------~s~~Ivky   94 (250)
T PF02191_consen   30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPY--PWQGTGHVVYNGSLYYNKY--------NSRNIVKY   94 (250)
T ss_pred             CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEec--eeccCCeEEECCcEEEEec--------CCceEEEE
Confidence            4689999887653     35665432     233333334554  3456667778888876431        26889999


Q ss_pred             ECCCCC---eEeCCCC------C---CCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCC
Q 016413          203 DSETRK---WDSIPPL------P---SPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIP  270 (390)
Q Consensus       203 d~~~~~---W~~~~~~------p---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p  270 (390)
                      |+.+++   +..++..      |   .+-...-.++-++-|+|+-........-.+-+.|  ..+++ ...+|..-  .+
T Consensus        95 dL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld--~~tL~-v~~tw~T~--~~  169 (250)
T PF02191_consen   95 DLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLD--PETLS-VEQTWNTS--YP  169 (250)
T ss_pred             ECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeC--cccCc-eEEEEEec--cC
Confidence            999886   4445421      1   1112234567778888886654322111111111  11111 24567653  44


Q ss_pred             CCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEE---
Q 016413          271 RGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIV---  346 (390)
Q Consensus       271 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~---  346 (390)
                      +... ..++++=|.||++-......                  ..-.+.|| .+++=+ ...++.+......+++..   
T Consensus       170 k~~~-~naFmvCGvLY~~~s~~~~~------------------~~I~yafDt~t~~~~-~~~i~f~~~~~~~~~l~YNP~  229 (250)
T PF02191_consen  170 KRSA-GNAFMVCGVLYATDSYDTRD------------------TEIFYAFDTYTGKEE-DVSIPFPNPYGNISMLSYNPR  229 (250)
T ss_pred             chhh-cceeeEeeEEEEEEECCCCC------------------cEEEEEEECCCCcee-ceeeeeccccCceEeeeECCC
Confidence            4333 24667778899997765321                  12267898 555433 344554444333444444   


Q ss_pred             CCEEEEE
Q 016413          347 NNSIIIT  353 (390)
Q Consensus       347 ~~~l~v~  353 (390)
                      +.+||+.
T Consensus       230 dk~LY~w  236 (250)
T PF02191_consen  230 DKKLYAW  236 (250)
T ss_pred             CCeEEEE
Confidence            5788887

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=88.70  E-value=11  Score=35.36  Aligned_cols=97  Identities=18%  Similarity=0.113  Sum_probs=50.1

Q ss_pred             EEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCC--CCeE
Q 016413          133 VFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET--RKWD  210 (390)
Q Consensus       133 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~--~~W~  210 (390)
                      .+|++.....-.=.++.||.++.+++.+........-...+....++.||+.....     .....+..|....  .+.+
T Consensus         3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~-----~~~g~v~~~~i~~~~g~L~   77 (345)
T PF10282_consen    3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS-----GDSGGVSSYRIDPDTGTLT   77 (345)
T ss_dssp             EEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS-----STTTEEEEEEEETTTTEEE
T ss_pred             EEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc-----cCCCCEEEEEECCCcceeE
Confidence            45665532221123666777999998876533211111222223578899986532     0234555565544  5777


Q ss_pred             eCCCCCCCCCCceEEEE---CCEEEEE
Q 016413          211 SIPPLPSPRYSPATQLW---RGRLHVM  234 (390)
Q Consensus       211 ~~~~~p~~r~~~~~~~~---~~~iyv~  234 (390)
                      .+...+......+.+.+   +..||+.
T Consensus        78 ~~~~~~~~g~~p~~i~~~~~g~~l~va  104 (345)
T PF10282_consen   78 LLNSVPSGGSSPCHIAVDPDGRFLYVA  104 (345)
T ss_dssp             EEEEEEESSSCEEEEEECTTSSEEEEE
T ss_pred             EeeeeccCCCCcEEEEEecCCCEEEEE
Confidence            77655533333333333   4556665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=88.37  E-value=20  Score=32.93  Aligned_cols=260  Identities=13%  Similarity=0.131  Sum_probs=105.4

Q ss_pred             ccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccCCCCeEE
Q 016413           32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQ  111 (390)
Q Consensus        32 ~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~  111 (390)
                      .+.-|++|-.  +       .+..-+---.+|..+..-...+....-.++...++.+....+  ...++.-.-...+|++
T Consensus        27 ~~~G~~VG~~--g-------~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~--~g~ll~T~DgG~tW~~   95 (302)
T PF14870_consen   27 PNHGWAVGAY--G-------TILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGE--PGLLLHTTDGGKTWER   95 (302)
T ss_dssp             SS-EEEEETT--T-------EEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEE--TTEEEEESSTTSS-EE
T ss_pred             CCEEEEEecC--C-------EEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcC--CceEEEecCCCCCcEE
Confidence            3556777744  1       233333356789887643222111111223332222222111  1134444445679999


Q ss_pred             CCC-CCCcCCCceEEEE-CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEE-EEeCCEEEEEecee
Q 016413          112 MPS-APVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV-VSDGRYIYIVSGQY  188 (390)
Q Consensus       112 ~~~-~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~-~~~~~~iyv~GG~~  188 (390)
                      ++- .+.|-..+.+..+ ++.++++|..       ..+++=.-...+|+.+..-..   ..-..+ ...++.+++++. .
T Consensus        96 v~l~~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~~~---gs~~~~~r~~dG~~vavs~-~  164 (302)
T PF14870_consen   96 VPLSSKLPGSPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSETS---GSINDITRSSDGRYVAVSS-R  164 (302)
T ss_dssp             ----TT-SS-EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S-------EEEEEE-TTS-EEEEET-T
T ss_pred             eecCCCCCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccCCc---ceeEeEEECCCCcEEEEEC-c
Confidence            862 2334344444444 5567777643       236665556789998654222   122222 235677666652 1


Q ss_pred             CCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEE-EECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEcc
Q 016413          189 GPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI  267 (390)
Q Consensus       189 ~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~  267 (390)
                      +       +-+...|+....|+..... ..|.-.++. .-++.|+++. ..+.-      .+.    +......+|.+..
T Consensus       165 G-------~~~~s~~~G~~~w~~~~r~-~~~riq~~gf~~~~~lw~~~-~Gg~~------~~s----~~~~~~~~w~~~~  225 (302)
T PF14870_consen  165 G-------NFYSSWDPGQTTWQPHNRN-SSRRIQSMGFSPDGNLWMLA-RGGQI------QFS----DDPDDGETWSEPI  225 (302)
T ss_dssp             S-------SEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEE------EEE----E-TTEEEEE---B
T ss_pred             c-------cEEEEecCCCccceEEccC-ccceehhceecCCCCEEEEe-CCcEE------EEc----cCCCCcccccccc
Confidence            1       2234568888889887543 334434444 4466787765 22211      111    0001355677632


Q ss_pred             -CCCCCCCce-eEEE-ECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEee-CCCCCeEECCC-CCCCCCcceeE
Q 016413          268 -PIPRGGPHR-ACFV-FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYML-DDEMKWKVLPP-MPKPNSHIECA  342 (390)
Q Consensus       268 -~~p~~~~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y-d~~~~W~~~~~-~~~~~~~~~~~  342 (390)
                       +.+...... .++. -++++++.||...                       +++= |..++|++.+. .+.|-..... 
T Consensus       226 ~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-----------------------l~~S~DgGktW~~~~~~~~~~~n~~~i-  281 (302)
T PF14870_consen  226 IPIKTNGYGILDLAYRPPNEIWAVGGSGT-----------------------LLVSTDGGKTWQKDRVGENVPSNLYRI-  281 (302)
T ss_dssp             -TTSS--S-EEEEEESSSS-EEEEESTT------------------------EEEESSTTSS-EE-GGGTTSSS---EE-
T ss_pred             CCcccCceeeEEEEecCCCCEEEEeCCcc-----------------------EEEeCCCCccceECccccCCCCceEEE-
Confidence             333333322 2222 2588999998642                       4443 36789999763 2333222222 


Q ss_pred             EEEECCEEEEEcCC
Q 016413          343 WVIVNNSIIITGGT  356 (390)
Q Consensus       343 ~~~~~~~l~v~GG~  356 (390)
                      ....+++-+++|..
T Consensus       282 ~f~~~~~gf~lG~~  295 (302)
T PF14870_consen  282 VFVNPDKGFVLGQD  295 (302)
T ss_dssp             EEEETTEEEEE-ST
T ss_pred             EEcCCCceEEECCC
Confidence            23456799999864

>smart00284 OLF Olfactomedin-like domains

Probab=87.82  E-value=20  Score=32.06  Aligned_cols=184  Identities=12%  Similarity=0.067  Sum_probs=94.6

Q ss_pred             ccEEEEecCCCCCCCccccceeeee----ccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccCCC
Q 016413           32 ADFMWASSSSSFSSSSAHLSVASNW----ALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDL  107 (390)
Q Consensus        32 ~~~l~~~GG~~~~~~~~~~~~~~~~----d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (390)
                      ++++|+..+.+     ...+.+..|    |+...++.+.-.++.+   -...+.+|..+.-.-.+.. +..+.+||..+.
T Consensus        34 ~~~~wv~~~~~-----~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~---~~GtG~VVYngslYY~~~~-s~~iiKydL~t~  104 (255)
T smart00284       34 KSLYWYMPLNT-----RVLRSVREYSSMSDFQMGKNPTDHPLPHA---GQGTGVVVYNGSLYFNKFN-SHDICRFDLTTE  104 (255)
T ss_pred             CceEEEEcccc-----CCCcEEEEecCHHHHhccCCceEEECCCc---cccccEEEECceEEEEecC-CccEEEEECCCC
Confidence            47888887751     122345454    2333444332223333   4556667766553222211 237888998887


Q ss_pred             CeEECCCCCCc----CC--------CceEEEECCEEEEEecCCCCCCCCCeEEEEeCCC----CceeecCCCCCCCCCcc
Q 016413          108 EWEQMPSAPVP----RL--------DGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTD----NKWVDRFDMPKDMAHSH  171 (390)
Q Consensus       108 ~W~~~~~~~~~----R~--------~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~----~~W~~~~~l~~~~~r~~  171 (390)
                      +=.....+|.+    +.        ..-+++-.+-|+|+=........ --+-+.||.+    ++|..  ..+.   +..
T Consensus       105 ~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~-ivvSkLnp~tL~ve~tW~T--~~~k---~sa  178 (255)
T smart00284      105 TYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGK-IVISKLNPATLTIENTWIT--TYNK---RSA  178 (255)
T ss_pred             cEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCC-EEEEeeCcccceEEEEEEc--CCCc---ccc
Confidence            65433333322    11        12234445678888554333221 1245667654    46765  3343   333


Q ss_pred             eEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC-CCCCCCCCceEEEE---CCEEEEE
Q 016413          172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQLW---RGRLHVM  234 (390)
Q Consensus       172 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~~iyv~  234 (390)
                      ..+-++-|.||++-....    ....-.+.||..+.+=..+. +++.+...+++.-.   +.+||+.
T Consensus       179 ~naFmvCGvLY~~~s~~~----~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~w  241 (255)
T smart00284      179 SNAFMICGILYVTRSLGS----KGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAW  241 (255)
T ss_pred             cccEEEeeEEEEEccCCC----CCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEE
Confidence            333445578999953211    22466789999987633321 33444444455533   6788887

>PRK04792 tolB translocation protein TolB; Provisional

Probab=87.64  E-value=30  Score=33.91  Aligned_cols=191  Identities=12%  Similarity=0.085  Sum_probs=88.5

Q ss_pred             CeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceE
Q 016413          145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT  224 (390)
Q Consensus       145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~  224 (390)
                      ..++..|.....-+.+...+.+  -......-.+.+|+.+ -...     ....++++|+.+.+-+.+...+......+.
T Consensus       198 ~~l~i~d~dG~~~~~l~~~~~~--~~~p~wSPDG~~La~~-s~~~-----g~~~L~~~dl~tg~~~~lt~~~g~~~~~~w  269 (448)
T PRK04792        198 YQLMIADYDGYNEQMLLRSPEP--LMSPAWSPDGRKLAYV-SFEN-----RKAEIFVQDIYTQVREKVTSFPGINGAPRF  269 (448)
T ss_pred             eEEEEEeCCCCCceEeecCCCc--ccCceECCCCCEEEEE-EecC-----CCcEEEEEECCCCCeEEecCCCCCcCCeeE
Confidence            4677777766544444333221  1122222233444433 2211     146799999988877766654422222222


Q ss_pred             EEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCE-EEEEcCCCCCCCCCCCCCc
Q 016413          225 QLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDR-LFVVGGQEGDFMAKPGSPI  303 (390)
Q Consensus       225 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~  303 (390)
                      ..-+..|++....++   ...+..++       ..+.+.+.+......... ....-+++ |++.....+.         
T Consensus       270 SPDG~~La~~~~~~g---~~~Iy~~d-------l~tg~~~~lt~~~~~~~~-p~wSpDG~~I~f~s~~~g~---------  329 (448)
T PRK04792        270 SPDGKKLALVLSKDG---QPEIYVVD-------IATKALTRITRHRAIDTE-PSWHPDGKSLIFTSERGGK---------  329 (448)
T ss_pred             CCCCCEEEEEEeCCC---CeEEEEEE-------CCCCCeEECccCCCCccc-eEECCCCCEEEEEECCCCC---------
Confidence            223445655533221   11233333       456666665432211111 12223444 5444322211         


Q ss_pred             cccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccce
Q 016413          304 FKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVI  382 (390)
Q Consensus       304 ~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W  382 (390)
                                 .++|.+| .+.+++.+..- .... ...+ ...+++.+++.......         ..++.+|+.+...
T Consensus       330 -----------~~Iy~~dl~~g~~~~Lt~~-g~~~-~~~~-~SpDG~~l~~~~~~~g~---------~~I~~~dl~~g~~  386 (448)
T PRK04792        330 -----------PQIYRVNLASGKVSRLTFE-GEQN-LGGS-ITPDGRSMIMVNRTNGK---------FNIARQDLETGAM  386 (448)
T ss_pred             -----------ceEEEEECCCCCEEEEecC-CCCC-cCee-ECCCCCEEEEEEecCCc---------eEEEEEECCCCCe
Confidence                       2599998 67777776421 1111 1121 33355544444333221         2588899888776


Q ss_pred             eecc
Q 016413          383 IYHY  386 (390)
Q Consensus       383 ~~v~  386 (390)
                      ..+.
T Consensus       387 ~~lt  390 (448)
T PRK04792        387 QVLT  390 (448)
T ss_pred             EEcc
Confidence            6554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=87.60  E-value=18  Score=31.40  Aligned_cols=63  Identities=13%  Similarity=0.138  Sum_probs=31.9

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-CCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +++.+++++.+      ..+.+||..+++-..  .+... ...-.++... ++.+++.++.        ...+..||+.+
T Consensus        62 ~~~~l~~~~~~------~~i~i~~~~~~~~~~--~~~~~-~~~i~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~  124 (289)
T cd00200          62 DGTYLASGSSD------KTIRLWDLETGECVR--TLTGH-TSYVSSVAFSPDGRILSSSSR--------DKTIKVWDVET  124 (289)
T ss_pred             CCCEEEEEcCC------CeEEEEEcCcccceE--EEecc-CCcEEEEEEcCCCCEEEEecC--------CCeEEEEECCC
Confidence            34466666654      358888887653221  11111 1112222332 3456666652        34578888874


Q ss_pred             C
Q 016413          207 R  207 (390)
Q Consensus       207 ~  207 (390)
                      .
T Consensus       125 ~  125 (289)
T cd00200         125 G  125 (289)
T ss_pred             c
Confidence            4

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=87.16  E-value=7.8  Score=34.68  Aligned_cols=96  Identities=20%  Similarity=0.206  Sum_probs=68.8

Q ss_pred             ECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       127 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      .++.+|.--|..+.    +.+.+||+.+.+=....++|.  .-++-+++..+++||.+-        -.....++||+.+
T Consensus        54 ~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~~l~~--~~FgEGit~~~d~l~qLT--------Wk~~~~f~yd~~t  119 (264)
T PF05096_consen   54 DDGTLYESTGLYGQ----SSLRKVDLETGKVLQSVPLPP--RYFGEGITILGDKLYQLT--------WKEGTGFVYDPNT  119 (264)
T ss_dssp             ETTEEEEEECSTTE----EEEEEEETTTSSEEEEEE-TT--T--EEEEEEETTEEEEEE--------SSSSEEEEEETTT
T ss_pred             CCCEEEEeCCCCCc----EEEEEEECCCCcEEEEEECCc--cccceeEEEECCEEEEEE--------ecCCeEEEEcccc
Confidence            47899998887663    569999999998776677776  457778899999999984        2356789999875


Q ss_pred             CCeEeCCCCCCCCCCceEEEECCEEEEEccCC
Q 016413          207 RKWDSIPPLPSPRYSPATQLWRGRLHVMGGSK  238 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  238 (390)
                        .+.+...+.+..+-.++..+..|++.-|.+
T Consensus       120 --l~~~~~~~y~~EGWGLt~dg~~Li~SDGS~  149 (264)
T PF05096_consen  120 --LKKIGTFPYPGEGWGLTSDGKRLIMSDGSS  149 (264)
T ss_dssp             --TEEEEEEE-SSS--EEEECSSCEEEE-SSS
T ss_pred             --ceEEEEEecCCcceEEEcCCCEEEEECCcc
Confidence              566665555567778888888899987743

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=86.92  E-value=33  Score=34.50  Aligned_cols=31  Identities=26%  Similarity=0.337  Sum_probs=21.8

Q ss_pred             eeeeeccCCCceEeecCCCCCccccccceEEEe
Q 016413           52 VASNWALEKSGVVVIPHVNATKIDRQRESVAVI   84 (390)
Q Consensus        52 ~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~   84 (390)
                      .+|.|++.. .|...+.+.. |..|+-.+.+-.
T Consensus        48 ~IEiwN~~~-~w~~~~vi~g-~~drsIE~L~W~   78 (691)
T KOG2048|consen   48 NIEIWNLSN-NWFLEPVIHG-PEDRSIESLAWA   78 (691)
T ss_pred             cEEEEccCC-CceeeEEEec-CCCCceeeEEEc
Confidence            789999755 8888777666 345666666655

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=86.72  E-value=30  Score=33.12  Aligned_cols=62  Identities=11%  Similarity=0.242  Sum_probs=37.2

Q ss_pred             CeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC
Q 016413          145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP  214 (390)
Q Consensus       145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~  214 (390)
                      ..++++|+.+.+-..+...+.  .....+....+..|++....++      ..+++.+|+.+...+.+..
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~--~~~~~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~~~~l~~  275 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPG--MNGAPAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQLTRLTN  275 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCC--CccceEECCCCCEEEEEECCCC------CccEEEEECCCCCEEECCC
Confidence            469999999887666554432  1222222223445665533221      3578999999888777754

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PLN00181 protein SPA1-RELATED; Provisional

Probab=86.67  E-value=43  Score=35.51  Aligned_cols=98  Identities=8%  Similarity=0.086  Sum_probs=48.3

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe--CCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +..++.|+.++      .+..||..+++-.  ..+..- ...-.+++..  ++.+++.||.+        ..+..||..+
T Consensus       545 ~~~las~~~Dg------~v~lWd~~~~~~~--~~~~~H-~~~V~~l~~~p~~~~~L~Sgs~D--------g~v~iWd~~~  607 (793)
T PLN00181        545 KSQVASSNFEG------VVQVWDVARSQLV--TEMKEH-EKRVWSIDYSSADPTLLASGSDD--------GSVKLWSINQ  607 (793)
T ss_pred             CCEEEEEeCCC------eEEEEECCCCeEE--EEecCC-CCCEEEEEEcCCCCCEEEEEcCC--------CEEEEEECCC
Confidence            44566666653      4778888765432  222211 1122333332  56788888754        3467788765


Q ss_pred             CCeEeCCCCCCCCCCceEEE---ECCEEEEEccCCCCCCCCCcceEEe
Q 016413          207 RKWDSIPPLPSPRYSPATQL---WRGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      ..-  +..+.. ......+.   -++.+++.|+.+     ..+..||+
T Consensus       608 ~~~--~~~~~~-~~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~  647 (793)
T PLN00181        608 GVS--IGTIKT-KANICCVQFPSESGRSLAFGSAD-----HKVYYYDL  647 (793)
T ss_pred             CcE--EEEEec-CCCeEEEEEeCCCCCEEEEEeCC-----CeEEEEEC
Confidence            432  111111 11111121   246677777654     35667774

>PRK05137 tolB translocation protein TolB; Provisional

Probab=85.80  E-value=36  Score=33.08  Aligned_cols=63  Identities=13%  Similarity=0.131  Sum_probs=39.5

Q ss_pred             CeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCC
Q 016413          145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL  215 (390)
Q Consensus       145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~  215 (390)
                      ..++++|+.+.+.+.+...+..  ....+..-.+.+|++....++      ..+++.+|..+..-+.+...
T Consensus       226 ~~i~~~dl~~g~~~~l~~~~g~--~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~Lt~~  288 (435)
T PRK05137        226 PRVYLLDLETGQRELVGNFPGM--TFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGTTTRLTDS  288 (435)
T ss_pred             CEEEEEECCCCcEEEeecCCCc--ccCcEECCCCCEEEEEEecCC------CceEEEEECCCCceEEccCC
Confidence            4699999999888877655431  223333333445554433221      46799999998887777643

>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A

Probab=85.04  E-value=20  Score=33.15  Aligned_cols=199  Identities=14%  Similarity=0.190  Sum_probs=88.0

Q ss_pred             eEEEEeCCEEEEEeceeCCC--CCCCCceEEEEE-CCCCCeEeCCC---CC--CC---CCCceEEEECCEEEEEccCCCC
Q 016413          172 LGVVSDGRYIYIVSGQYGPQ--CRGPTSRTFVLD-SETRKWDSIPP---LP--SP---RYSPATQLWRGRLHVMGGSKEN  240 (390)
Q Consensus       172 ~~~~~~~~~iyv~GG~~~~~--~~~~~~~v~~yd-~~~~~W~~~~~---~p--~~---r~~~~~~~~~~~iyv~GG~~~~  240 (390)
                      ++++..++.|++|..-....  .......+..+. ....+|+....   ..  ..   ...+.+++.++.||++=|....
T Consensus         2 PSLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~   81 (310)
T PF13859_consen    2 PSLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR   81 (310)
T ss_dssp             EEEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred             CCEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence            46788899999987544221  111223333443 34567976431   11  11   2235667889999999886443


Q ss_pred             CCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCcccccccc-cee-cCcEE
Q 016413          241 RHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRH-EVV-YGDVY  318 (390)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~  318 (390)
                      ..  ....|++.++.-+....+|.....++......      .+-++-||-.+--+. ....-++.+... ..- .-.+.
T Consensus        82 ~~--~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~------~~~figgGGSGV~m~-dGTLVFPv~a~~~~~~~~~SlI  152 (310)
T PF13859_consen   82 SA--GADDWGLLLVKSTDGGIKWGDTKSLPSTSFQS------WKQFIGGGGSGVVME-DGTLVFPVQATKKNGDGTVSLI  152 (310)
T ss_dssp             ----SSTTEEEEEEEEESSSSEE---EE-GGGS-EE------EEEEEE-SEE-EE-T-TS-EEEEEEEEETT---EEEEE
T ss_pred             cc--cccccceeeeeccCCcceeeecccCCchhccc------cceeecCCCCceEEc-CCCEEEEEeeeccCccceEEEE
Confidence            22  33456665554333444698876655322100      001222221111000 000000100000 001 12355


Q ss_pred             eeC--CCCCeEECCCCCCCCCcceeEEEEE-CCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceee-ccCCC
Q 016413          319 MLD--DEMKWKVLPPMPKPNSHIECAWVIV-NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIY-HYRPP  389 (390)
Q Consensus       319 ~yd--~~~~W~~~~~~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~-v~~~P  389 (390)
                      +|.  ....|+.-..++..-+. ...++-. +++|+++.-++....         .||.=.--..+|.+ ++++|
T Consensus       153 iYS~d~g~~W~lskg~s~~gC~-~psv~EWe~gkLlM~~~c~~g~r---------rVYeS~DmG~tWtea~gtls  217 (310)
T PF13859_consen  153 IYSTDDGKTWKLSKGMSPAGCS-DPSVVEWEDGKLLMMTACDDGRR---------RVYESGDMGTTWTEALGTLS  217 (310)
T ss_dssp             EEESSTTSS-EE-S----TT-E-EEEEEEE-TTEEEEEEE-TTS------------EEEESSTTSS-EE-TTTTT
T ss_pred             EEECCCccceEeccccCCCCcc-eEEEEeccCCeeEEEEecccceE---------EEEEEcccceehhhccCccc
Confidence            665  35699987777765554 3556777 889999987765421         35554455678987 56655

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=84.62  E-value=47  Score=33.35  Aligned_cols=98  Identities=18%  Similarity=0.303  Sum_probs=55.3

Q ss_pred             ceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCC--ceeecCCCCCCC-C-----CcceEEEEeCCEEEEEeceeCCCCC
Q 016413          122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDM-A-----HSHLGVVSDGRYIYIVSGQYGPQCR  193 (390)
Q Consensus       122 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~~-~-----r~~~~~~~~~~~iyv~GG~~~~~~~  193 (390)
                      .+-++.++.||+....       ..+..+|..+.  .|+.-...+... +     ....++++.+++||+...       
T Consensus        63 stPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------  128 (527)
T TIGR03075        63 SQPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------  128 (527)
T ss_pred             cCCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------
Confidence            3446679999995432       24888888765  487543332210 0     012234667888887432       


Q ss_pred             CCCceEEEEECCCCC--eEeCC-CCCCC-CCCceEEEECCEEEEEc
Q 016413          194 GPTSRTFVLDSETRK--WDSIP-PLPSP-RYSPATQLWRGRLHVMG  235 (390)
Q Consensus       194 ~~~~~v~~yd~~~~~--W~~~~-~~p~~-r~~~~~~~~~~~iyv~G  235 (390)
                        ...+.++|.++.+  |+.-. ..... ....+-++.++.||+-.
T Consensus       129 --dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~  172 (527)
T TIGR03075       129 --DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGI  172 (527)
T ss_pred             --CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEee
Confidence              3468899987754  86543 22111 11223456788877753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A

Probab=84.42  E-value=13  Score=33.40  Aligned_cols=221  Identities=12%  Similarity=0.157  Sum_probs=101.8

Q ss_pred             CCCCeEECCC---CC--CcCCCceEEEE--CCEEEEEe--cCCCCCCCCCeE-EEEeCC-CCceeecCCCCCC------C
Q 016413          105 PDLEWEQMPS---AP--VPRLDGAAIQI--KNLFYVFA--GYGSLDYVHSHV-DVYNFT-DNKWVDRFDMPKD------M  167 (390)
Q Consensus       105 ~~~~W~~~~~---~~--~~R~~~~~~~~--~~~lyv~G--G~~~~~~~~~~v-~~yd~~-~~~W~~~~~l~~~------~  167 (390)
                      ...+|+....   .+  ..+....+.+.  +++|+++.  +..........+ +..... ..+|+....++..      .
T Consensus        28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~  107 (275)
T PF13088_consen   28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSG  107 (275)
T ss_dssp             CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEE
T ss_pred             CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceec
Confidence            3467977432   22  12223333332  78998886  222211111111 244433 5689886544321      0


Q ss_pred             CCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEEC-CCCCeEeCCCCCCC-CCCc-eEEE-ECCEEEEEccCCCCCCC
Q 016413          168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDS-ETRKWDSIPPLPSP-RYSP-ATQL-WRGRLHVMGGSKENRHT  243 (390)
Q Consensus       168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~-~~~~W~~~~~~p~~-r~~~-~~~~-~~~~iyv~GG~~~~~~~  243 (390)
                      .-....+...++.+++. .+....  ........|.. ...+|+...+.+.. .... +.+. -+++|+++--.. ..  
T Consensus       108 ~~~~~~i~~~~G~l~~~-~~~~~~--~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~--  181 (275)
T PF13088_consen  108 PGRGPPIQLPDGRLIAP-YYHESG--GSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GN--  181 (275)
T ss_dssp             CSEEEEEEECTTEEEEE-EEEESS--CEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SS--
T ss_pred             cceeeeeEecCCCEEEE-Eeeccc--cCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CC--
Confidence            11122245568888887 222211  11333444444 45679888765322 2222 2332 366888886442 11  


Q ss_pred             CCcceEEeeeeccccccCCeEEcc--CCCCCCCceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEee
Q 016413          244 PGLEHWSIAVKDGKALEKAWRTEI--PIPRGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYML  320 (390)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~W~~~~--~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y  320 (390)
                      .  ..+-..  +- ....+|+...  .+|........+.+ +++++++.......                ..+.-....
T Consensus       182 ~--~~~~~~--S~-D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r----------------~~l~l~~S~  240 (275)
T PF13088_consen  182 D--DIYISR--ST-DGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGR----------------SNLSLYVSE  240 (275)
T ss_dssp             T--EEEEEE--ES-STTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTS----------------EEEEEEEEC
T ss_pred             C--cEEEEE--EC-CCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCC----------------CceEEEEEe
Confidence            1  222211  11 2567899865  45555443333432 56888776632111                111112233


Q ss_pred             CCCCCeEECCCCCCCC---CcceeEEEEECCEEEE
Q 016413          321 DDEMKWKVLPPMPKPN---SHIECAWVIVNNSIII  352 (390)
Q Consensus       321 d~~~~W~~~~~~~~~~---~~~~~~~~~~~~~l~v  352 (390)
                      |...+|+....+....   ......+..-+|+|+|
T Consensus       241 D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i  275 (275)
T PF13088_consen  241 DGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI  275 (275)
T ss_dssp             TTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred             CCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence            3566998765443322   3343433444678886

...

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=84.01  E-value=14  Score=28.93  Aligned_cols=83  Identities=13%  Similarity=0.267  Sum_probs=56.4

Q ss_pred             EEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC---CCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEe
Q 016413          175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       175 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      +.++|.+|-..-. ..   .....+.+||..+.+|+.+..   .........++.++|+|-++.-..... ....+.|-+
T Consensus         2 icinGvly~~a~~-~~---~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~~~iWvL   76 (129)
T PF08268_consen    2 ICINGVLYWLAWS-ED---SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE-PDSIDIWVL   76 (129)
T ss_pred             EEECcEEEeEEEE-CC---CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC-cceEEEEEe
Confidence            3467888887755 11   236789999999999988863   234556677889999999986443221 334677765


Q ss_pred             eeeccccccCCeEEc
Q 016413          252 AVKDGKALEKAWRTE  266 (390)
Q Consensus       252 ~~~~~~~~~~~W~~~  266 (390)
                      +  |+  ...+|++.
T Consensus        77 e--D~--~k~~Wsk~   87 (129)
T PF08268_consen   77 E--DY--EKQEWSKK   87 (129)
T ss_pred             e--cc--ccceEEEE
Confidence            4  33  35889875

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes

Probab=83.82  E-value=31  Score=30.69  Aligned_cols=183  Identities=14%  Similarity=0.127  Sum_probs=81.4

Q ss_pred             cCCCCeEE--CCCCCC-------cCCCceEEEECCEEEEEecCCCCCCCCC-eEEEEeCCCCcee--------ecCCCCC
Q 016413          104 APDLEWEQ--MPSAPV-------PRLDGAAIQIKNLFYVFAGYGSLDYVHS-HVDVYNFTDNKWV--------DRFDMPK  165 (390)
Q Consensus       104 ~~~~~W~~--~~~~~~-------~R~~~~~~~~~~~lyv~GG~~~~~~~~~-~v~~yd~~~~~W~--------~~~~l~~  165 (390)
                      ...+.|+.  |+..+.       .-.-|+.+.+++.-|.+|=..++-.+.. -+..+   ++.|.        .++.- .
T Consensus       112 F~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yf---s~~~~sp~~~vrr~i~se-y  187 (367)
T PF12217_consen  112 FHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYF---SDAFASPGVFVRRIIPSE-Y  187 (367)
T ss_dssp             STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEE---TTTTT-TT--EEEE--GG-G
T ss_pred             cccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEe---cccccCCcceeeeechhh-h
Confidence            34456754  444443       2335888899988888875443332211 12222   22221        22211 1


Q ss_pred             CCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC-CCCCCCCCceEEEECCEEEEEccCCCC----
Q 016413          166 DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQLWRGRLHVMGGSKEN----  240 (390)
Q Consensus       166 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~iyv~GG~~~~----  240 (390)
                      ...-+-.++-..++.||+.---....  ++-+.+.+-+.....|+.+. |-.......-.+.+++.||+||-....    
T Consensus       188 ~~~AsEPCvkyY~g~LyLtTRgt~~~--~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsERA~~EWE  265 (367)
T PF12217_consen  188 ERNASEPCVKYYDGVLYLTTRGTLPT--NPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSERAENEWE  265 (367)
T ss_dssp             -TTEEEEEEEEETTEEEEEEEES-TT--S---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-SSTT-SS
T ss_pred             ccccccchhhhhCCEEEEEEcCcCCC--CCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEeccccccccc
Confidence            11234556667899999986322221  34577888888888998874 222223333467889999999964321    


Q ss_pred             ------CCC---CCcceEEeeeeccccccCCeEEccC------CCCCCCce-eEEEECCEEE-EEcCCC
Q 016413          241 ------RHT---PGLEHWSIAVKDGKALEKAWRTEIP------IPRGGPHR-ACFVFNDRLF-VVGGQE  292 (390)
Q Consensus       241 ------~~~---~~~~~~~~~~~~~~~~~~~W~~~~~------~p~~~~~~-~~~~~~~~iy-v~GG~~  292 (390)
                            ++.   +......+.+.+.+++.-+|..+..      ......+. ++|+.++-|| +|||.+
T Consensus       266 ~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED  334 (367)
T PF12217_consen  266 GGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED  334 (367)
T ss_dssp             TT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred             cCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence                  111   1111112223344466777776632      12222222 4456677765 789975

This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.

>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=83.64  E-value=35  Score=31.10  Aligned_cols=161  Identities=15%  Similarity=0.069  Sum_probs=84.1

Q ss_pred             eecCCCCCCCCCcceEEEEeCCEEEEEeceeC-------CC-------CCCCCceEEEEECCCCC----eEeCCCCCCCC
Q 016413          158 VDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYG-------PQ-------CRGPTSRTFVLDSETRK----WDSIPPLPSPR  219 (390)
Q Consensus       158 ~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~-------~~-------~~~~~~~v~~yd~~~~~----W~~~~~~p~~r  219 (390)
                      +.+.+.|..-.-..-++..+++.|| |||+-.       ..       ..+..+.|..||.++++    |.+--.-+  +
T Consensus        26 elvG~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~--~  102 (339)
T PF09910_consen   26 ELVGPPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDK--T  102 (339)
T ss_pred             eeccCCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCc--c
Confidence            3466666533344556666777666 677621       10       01235789999998886    65533222  2


Q ss_pred             CCceEE------EECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCC
Q 016413          220 YSPATQ------LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG  293 (390)
Q Consensus       220 ~~~~~~------~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~  293 (390)
                      ....=+      .++++|++.=+-. .   ...-+|.+     +..+.+=+.+...|...   ++.+++...|-+  .+.
T Consensus       103 ~WaGEVSdIlYdP~~D~LLlAR~DG-h---~nLGvy~l-----dr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~  168 (339)
T PF09910_consen  103 KWAGEVSDILYDPYEDRLLLARADG-H---ANLGVYSL-----DRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNF  168 (339)
T ss_pred             ccccchhheeeCCCcCEEEEEecCC-c---ceeeeEEE-----cccCCceeeccCCCCcC---ceEeeeeEEEec--ccc
Confidence            222211      3477888874321 1   12233443     35666666666555543   455566555533  221


Q ss_pred             CCCCCCCCCccccccccceecCcEEeeC-CCCCe--EECCC------CCCCCCcceeEEEEECCEEEEE
Q 016413          294 DFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW--KVLPP------MPKPNSHIECAWVIVNNSIIIT  353 (390)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W--~~~~~------~~~~~~~~~~~~~~~~~~l~v~  353 (390)
                      .                 .-.+.+.+|| .+.+|  +..+.      -+.-+ +..-+++...+++|.|
T Consensus       169 ~-----------------~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~-~~~G~~~s~ynR~faF  219 (339)
T PF09910_consen  169 H-----------------KGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIR-PELGAMASAYNRLFAF  219 (339)
T ss_pred             c-----------------cCCceEEEEEccCCeEEEEecccccCCCCCceEe-eccccEEEEeeeEEEE
Confidence            1                 1235699999 88899  44331      01111 1223356677787765

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=83.62  E-value=38  Score=31.57  Aligned_cols=141  Identities=16%  Similarity=0.224  Sum_probs=72.4

Q ss_pred             ceEEEEe-CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCc--eEEEECCEEEEEccCCCCCCCCCcc
Q 016413          171 HLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSP--ATQLWRGRLHVMGGSKENRHTPGLE  247 (390)
Q Consensus       171 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~  247 (390)
                      -++++.. +..+.+.||-+        +..+.++..+..|--  .++--...-  ....+++.+.+-|+.++     .+.
T Consensus        67 vFavsl~P~~~l~aTGGgD--------D~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdmsG-----~v~  131 (399)
T KOG0296|consen   67 VFAVSLHPNNNLVATGGGD--------DLAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDMSG-----KVL  131 (399)
T ss_pred             eEEEEeCCCCceEEecCCC--------ceEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCCCc-----cEE
Confidence            3444444 67788888854        345677777776422  233222222  23366888888888754     344


Q ss_pred             eEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCe
Q 016413          248 HWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW  326 (390)
Q Consensus       248 ~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W  326 (390)
                      +|...     ....+|....++..--  --..--...|++.|-.++.                      +|.|. +...-
T Consensus       132 v~~~s-----tg~~~~~~~~e~~die--Wl~WHp~a~illAG~~DGs----------------------vWmw~ip~~~~  182 (399)
T KOG0296|consen  132 VFKVS-----TGGEQWKLDQEVEDIE--WLKWHPRAHILLAGSTDGS----------------------VWMWQIPSQAL  182 (399)
T ss_pred             EEEcc-----cCceEEEeecccCceE--EEEecccccEEEeecCCCc----------------------EEEEECCCcce
Confidence            55432     3444555431111000  0000002367777776654                      88887 65422


Q ss_pred             EECCCCCCCCCcceeEEEEECCEEEEEcCCC
Q 016413          327 KVLPPMPKPNSHIECAWVIVNNSIIITGGTT  357 (390)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~  357 (390)
                      .+  -|+-+.....++-...+||.++.|-.+
T Consensus       183 ~k--v~~Gh~~~ct~G~f~pdGKr~~tgy~d  211 (399)
T KOG0296|consen  183 CK--VMSGHNSPCTCGEFIPDGKRILTGYDD  211 (399)
T ss_pred             ee--EecCCCCCcccccccCCCceEEEEecC
Confidence            22  233333333444456677777666543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=83.17  E-value=41  Score=31.55  Aligned_cols=144  Identities=15%  Similarity=0.219  Sum_probs=66.3

Q ss_pred             cccccccCC--CCeEECCCCCCcCCCceEEEE---CCEEEEEecCCCCCCCCCeEEEEeCCCCc-eeec---------CC
Q 016413           98 TFADLPAPD--LEWEQMPSAPVPRLDGAAIQI---KNLFYVFAGYGSLDYVHSHVDVYNFTDNK-WVDR---------FD  162 (390)
Q Consensus        98 ~~~~~~~~~--~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~---------~~  162 (390)
                      .+..|....  .+.+.+...+......+-+.+   +..||+.- +.     ...+.+|++..+- =...         .+
T Consensus        63 ~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~  136 (345)
T PF10282_consen   63 GVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGP  136 (345)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEES
T ss_pred             CEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCC
Confidence            344443333  466666555533333333444   34566652 22     2357777776641 1111         11


Q ss_pred             CCC-CCCCcceEEEEe--CCEEEEEeceeCCCCCCCCceEEEEECCCCC--eEeCCC--CCCCCCCce-EEEE--CCEEE
Q 016413          163 MPK-DMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPP--LPSPRYSPA-TQLW--RGRLH  232 (390)
Q Consensus       163 l~~-~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~--~p~~r~~~~-~~~~--~~~iy  232 (390)
                      -+. ...-..|.+...  ++.+|+.-        .-.+.++.|+.....  .+....  +|.+ .+.. ++..  +..+|
T Consensus       137 ~~~rq~~~h~H~v~~~pdg~~v~v~d--------lG~D~v~~~~~~~~~~~l~~~~~~~~~~G-~GPRh~~f~pdg~~~Y  207 (345)
T PF10282_consen  137 NPDRQEGPHPHQVVFSPDGRFVYVPD--------LGADRVYVYDIDDDTGKLTPVDSIKVPPG-SGPRHLAFSPDGKYAY  207 (345)
T ss_dssp             STTTTSSTCEEEEEE-TTSSEEEEEE--------TTTTEEEEEEE-TTS-TEEEEEEEECSTT-SSEEEEEE-TTSSEEE
T ss_pred             cccccccccceeEEECCCCCEEEEEe--------cCCCEEEEEEEeCCCceEEEeeccccccC-CCCcEEEEcCCcCEEE
Confidence            111 111234455544  45787763        115778888887765  554332  2221 2221 2222  35799


Q ss_pred             EEccCCCCCCCCCcceEEeeeeccccccCCeEEc
Q 016413          233 VMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE  266 (390)
Q Consensus       233 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~  266 (390)
                      |+.-.     .+.+.+|++     ++.+.+++.+
T Consensus       208 v~~e~-----s~~v~v~~~-----~~~~g~~~~~  231 (345)
T PF10282_consen  208 VVNEL-----SNTVSVFDY-----DPSDGSLTEI  231 (345)
T ss_dssp             EEETT-----TTEEEEEEE-----ETTTTEEEEE
T ss_pred             EecCC-----CCcEEEEee-----cccCCceeEE
Confidence            98643     344555554     2345555543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=81.76  E-value=50  Score=31.61  Aligned_cols=147  Identities=14%  Similarity=0.061  Sum_probs=69.7

Q ss_pred             ceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCce
Q 016413          197 SRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHR  276 (390)
Q Consensus       197 ~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~  276 (390)
                      ..++++|+.+..-+.+...+......+...-+..|++.....+   ...+..++       ..+.+.+.+...+..... 
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~---~~~i~~~d-------~~~~~~~~l~~~~~~~~~-  282 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG---NPDIYVMD-------LDGKQLTRLTNGPGIDTE-  282 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC---CccEEEEE-------CCCCCEEECCCCCCCCCC-
Confidence            6789999988776666544322222222122335655533221   12333344       345555555332211111 


Q ss_pred             eEEEECCE-EEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEc
Q 016413          277 ACFVFNDR-LFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITG  354 (390)
Q Consensus       277 ~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~G  354 (390)
                      ....-+++ |++.....+.                    ..+|.+| .+..++.+.....  ..... ....+++.+++.
T Consensus       283 ~~~s~dg~~l~~~s~~~g~--------------------~~iy~~d~~~~~~~~l~~~~~--~~~~~-~~spdg~~i~~~  339 (417)
T TIGR02800       283 PSWSPDGKSIAFTSDRGGS--------------------PQIYMMDADGGEVRRLTFRGG--YNASP-SWSPDGDLIAFV  339 (417)
T ss_pred             EEECCCCCEEEEEECCCCC--------------------ceEEEEECCCCCEEEeecCCC--CccCe-EECCCCCEEEEE
Confidence            11222444 4444322211                    2488898 6666666542211  11111 123356666665


Q ss_pred             CCCCCCCcceeeEEeeeEEEeecCccceeecc
Q 016413          355 GTTEKHPMTKRMILVGEVFQFHLDSLVIIYHY  386 (390)
Q Consensus       355 G~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~  386 (390)
                      ......         ..++.+|+.+..+..+.
T Consensus       340 ~~~~~~---------~~i~~~d~~~~~~~~l~  362 (417)
T TIGR02800       340 HREGGG---------FNIAVMDLDGGGERVLT  362 (417)
T ss_pred             EccCCc---------eEEEEEeCCCCCeEEcc
Confidence            543321         25889998887666554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=81.75  E-value=21  Score=27.96  Aligned_cols=84  Identities=14%  Similarity=0.108  Sum_probs=54.1

Q ss_pred             EECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCC-CCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEE-E
Q 016413          126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-PKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL-D  203 (390)
Q Consensus       126 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y-d  203 (390)
                      .++|-||-..-..  ......+-+||..+++|+.+... ..........++.++|+|-++.-.....  ...-++|+. |
T Consensus         3 cinGvly~~a~~~--~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~~~iWvLeD   78 (129)
T PF08268_consen    3 CINGVLYWLAWSE--DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE--PDSIDIWVLED   78 (129)
T ss_pred             EECcEEEeEEEEC--CCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC--cceEEEEEeec
Confidence            4677777776652  11235699999999999876431 1122356777888999999876433221  113567777 4


Q ss_pred             CCCCCeEeCC
Q 016413          204 SETRKWDSIP  213 (390)
Q Consensus       204 ~~~~~W~~~~  213 (390)
                      .++.+|++..
T Consensus        79 ~~k~~Wsk~~   88 (129)
T PF08268_consen   79 YEKQEWSKKH   88 (129)
T ss_pred             cccceEEEEE
Confidence            6677898764

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PLN00181 protein SPA1-RELATED; Provisional

Probab=81.56  E-value=66  Score=34.12  Aligned_cols=58  Identities=14%  Similarity=0.117  Sum_probs=29.6

Q ss_pred             CEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCC-CCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          179 RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSP-RYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       179 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      +...+.|+.+        ..+.+||..+.+-  +..+... ..-.+++..  ++.+++.||.+     ..+..|++
T Consensus       545 ~~~las~~~D--------g~v~lWd~~~~~~--~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iWd~  605 (793)
T PLN00181        545 KSQVASSNFE--------GVVQVWDVARSQL--VTEMKEHEKRVWSIDYSSADPTLLASGSDD-----GSVKLWSI  605 (793)
T ss_pred             CCEEEEEeCC--------CeEEEEECCCCeE--EEEecCCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEEEC
Confidence            4455566543        3477788876432  2222111 111223332  45677777754     35777875

>PTZ00421 coronin; Provisional

Probab=80.64  E-value=64  Score=32.09  Aligned_cols=102  Identities=10%  Similarity=-0.044  Sum_probs=49.0

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCcee-----ecCCCCCCCCCcceEEEEe--CCEEEEEeceeCCCCCCCCceEE
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWV-----DRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTF  200 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-----~~~~l~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~  200 (390)
                      ++.+++.|+.++      .+.+||..++...     .+..+... ...-..+...  ++.+++.||.+        ..+.
T Consensus        87 d~~~LaSgS~Dg------tIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs~D--------gtVr  151 (493)
T PTZ00421         87 DPQKLFTASEDG------TIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSAMNVLASAGAD--------MVVN  151 (493)
T ss_pred             CCCEEEEEeCCC------EEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCCCCEEEEEeCC--------CEEE
Confidence            456778887764      4777777654321     11112110 0111122222  34577777653        3477


Q ss_pred             EEECCCCCeEeCCCCCCCCC-CceEE-EECCEEEEEccCCCCCCCCCcceEEe
Q 016413          201 VLDSETRKWDSIPPLPSPRY-SPATQ-LWRGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       201 ~yd~~~~~W~~~~~~p~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      +||..+.+-.  ..+..... -.++. .-++.+++.|+.+     ..+..||+
T Consensus       152 IWDl~tg~~~--~~l~~h~~~V~sla~spdG~lLatgs~D-----g~IrIwD~  197 (493)
T PTZ00421        152 VWDVERGKAV--EVIKCHSDQITSLEWNLDGSLLCTTSKD-----KKLNIIDP  197 (493)
T ss_pred             EEECCCCeEE--EEEcCCCCceEEEEEECCCCEEEEecCC-----CEEEEEEC
Confidence            8888765421  11111111 11222 2256777777653     35677774

>PRK10115 protease 2; Provisional

Probab=80.24  E-value=79  Score=32.93  Aligned_cols=196  Identities=11%  Similarity=0.069  Sum_probs=92.5

Q ss_pred             CeEEEEeCCCCcee--ecCCCCCCCCCcceEEEEe-CCEEEEEeceeCCCCCCCCceEEEEEC--CCCCeEeCCCCCCCC
Q 016413          145 SHVDVYNFTDNKWV--DRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDS--ETRKWDSIPPLPSPR  219 (390)
Q Consensus       145 ~~v~~yd~~~~~W~--~~~~l~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~p~~r  219 (390)
                      .+++++++.++.-+  .+-.-+.  .......... +++..++.....     ..+.++.|+.  .+..|..+.+.+.. 
T Consensus       199 ~~v~~h~lgt~~~~d~lv~~e~~--~~~~~~~~~s~d~~~l~i~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~-  270 (686)
T PRK10115        199 YQVWRHTIGTPASQDELVYEEKD--DTFYVSLHKTTSKHYVVIHLASA-----TTSEVLLLDAELADAEPFVFLPRRKD-  270 (686)
T ss_pred             CEEEEEECCCChhHCeEEEeeCC--CCEEEEEEEcCCCCEEEEEEECC-----ccccEEEEECcCCCCCceEEEECCCC-
Confidence            67999999988432  2221111  1222233333 444333443322     2466888883  23344333222222 


Q ss_pred             CCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCC
Q 016413          220 YSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKP  299 (390)
Q Consensus       220 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~  299 (390)
                      ........++.+|+.--....       .+.+...+.+ ...+|+.+.+......--.+...++.|++..-.++.     
T Consensus       271 ~~~~~~~~~~~ly~~tn~~~~-------~~~l~~~~~~-~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~-----  337 (686)
T PRK10115        271 HEYSLDHYQHRFYLRSNRHGK-------NFGLYRTRVR-DEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGL-----  337 (686)
T ss_pred             CEEEEEeCCCEEEEEEcCCCC-------CceEEEecCC-CcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCE-----
Confidence            112333556788888533211       1222212211 146898876552222222455668888777554432     


Q ss_pred             CCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEE-EEC-CEEEE-EcCCCCCCCcceeeEEeeeEEEe
Q 016413          300 GSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWV-IVN-NSIII-TGGTTEKHPMTKRMILVGEVFQF  375 (390)
Q Consensus       300 ~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~-~~~-~~l~v-~GG~~~~~~~~~~~~~~~~v~~y  375 (390)
                                     ..++++| .+.....++ ++.+......... ..+ +.+++ +.+....          .+++.|
T Consensus       338 ---------------~~l~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P----------~~~y~~  391 (686)
T PRK10115        338 ---------------TSLRQINRKTREVIGIA-FDDPAYVTWIAYNPEPETSRLRYGYSSMTTP----------DTLFEL  391 (686)
T ss_pred             ---------------EEEEEEcCCCCceEEec-CCCCceEeeecccCCCCCceEEEEEecCCCC----------CEEEEE
Confidence                           3488887 444555443 1222221100000 012 23332 3333322          379999


Q ss_pred             ecCccceeeccC
Q 016413          376 HLDSLVIIYHYR  387 (390)
Q Consensus       376 d~~~~~W~~v~~  387 (390)
                      |+.+++|..+..
T Consensus       392 d~~~~~~~~l~~  403 (686)
T PRK10115        392 DMDTGERRVLKQ  403 (686)
T ss_pred             ECCCCcEEEEEe
Confidence            999988877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	390
2woz_A	318	The Novel Beta-Propeller Of The Btb-Kelch Protein K		2e-06
2woz_A	318	The Novel Beta-Propeller Of The Btb-Kelch Protein K		6e-05
3ii7_A	306	Crystal Structure Of The Kelch Domain Of Human Klhl		3e-06
2vpj_A	301	Crystal Structure Of The Kelch Domain Of Human Klhl		7e-05
2xn4_A	302	Crystal Structure Of The Kelch Domain Of Human Klhl		2e-04
3vng_A	309	Crystal Structure Of Keap1 In Complex With Syntheti		8e-04

>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 96/235 (40%), Gaps = 28/235 (11%)
Query: 66  IPHVNATKIDRQRESVAV----IDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLD 121
           IP  +++ + +Q +   V    +D++ +D  + L + F  L     EW  +P  P  R  
Sbjct: 45  IPRNHSSIVTQQNQVYVVGGLYVDEENKD--QPLQSYFFQLDNVSSEWVGLPPLPSARCL 102
Query: 122 GAAIQIKNLFYVFAGY-----GSLDYVHSHVDVYNFTDNKWVDRFDMP-KDMAHSHLGVV 175
               ++ +  YV AG       SLD V      Y+    KW +  ++P K   H+   V+
Sbjct: 103 FGLGEVDDKIYVVAGKDLQTEASLDSVL----CYDPVAAKWSEVKNLPIKVYGHN---VI 155
Query: 176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMG 235
           S    IY + G+     +  T+R F+ + +   W  + P+ +PR      + +G++ + G
Sbjct: 156 SHNGMIYCLGGKTDD--KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAG 213
Query: 236 GSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGG 290
           G  E+  +  +E + +           W      P+     +       L+ +GG
Sbjct: 214 GVTEDGLSASVEAFDLKT-------NKWEVMTEFPQERSSISLVSLAGSLYAIGG 261

>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 27/200 (13%)
Query: 163 MPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGP---TSRTFVLDSETRKWDSIPPLPSPR 219
           + + +  +H  +V+    +Y+V G Y  +        S  F LD+ + +W  +PPLPS R
Sbjct: 41  LAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100
Query: 220 YSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACF 279
                     +++V+ G K+ +    L+  S+   D  A + +    +PI   G +    
Sbjct: 101 CLFGLGEVDDKIYVVAG-KDLQTEASLD--SVLCYDPVAAKWSEVKNLPIKVYGHN--VI 155
Query: 280 VFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSH 338
             N  ++ +GG+  D          KC+ R       V++ +  +  WK L PM  P S 
Sbjct: 156 SHNGMIYCLGGKTDD---------KKCTNR-------VFIYNPKKGDWKDLAPMKTPRSM 199
Query: 339 IECAWVIVNNSIIITGGTTE 358
              A  I    I+I GG TE
Sbjct: 200 FGVA--IHKGKIVIAGGVTE 217

>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7 Length = 306

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 91/242 (37%), Gaps = 31/242 (12%)
Query: 106 DLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD--M 163
           D  W  +      R D A +   N+ Y+  G  S  +    +D YN   + W  +     
Sbjct: 33  DYSWTDIRCPFEKRRDAACVFWDNVVYILGG--SQLFPIKRMDCYNVVKDSWYSKLGPPT 90
Query: 164 PKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTF-VLDSETRKWDSIPPLPSPRYSP 222
           P+D   S     ++G+ IY  SG  G +        F   D+ T  W + P + + R S 
Sbjct: 91  PRD---SLAACAAEGK-IY-TSG--GSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH 143
Query: 223 ATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFN 282
                 G ++V GGS  N +  G    S  V D     + W    P+     +       
Sbjct: 144 GMVEANGLIYVCGGSLGN-NVSGRVLNSCEVYD--PATETWTELCPMIEARKNHGLVFVK 200
Query: 283 DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECA 342
           D++F VGGQ G                  V Y D+ +     +WK++ PMP     ++CA
Sbjct: 201 DKIFAVGGQNG------------LGGLDNVEYYDIKL----NEWKMVSPMPWKGVTVKCA 244
Query: 343 WV 344
            V
Sbjct: 245 AV 246

>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 85/235 (36%), Gaps = 26/235 (11%)
Query: 73  KIDRQRESVAVIDK-------KGQDA-ERFLSATFADLPA-PDLEWEQMPSAPVPRLDGA 123
            I R+R  VA +          G D   R  S    D  A  D  W  +    V R    
Sbjct: 48  SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG 107
Query: 124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM--AHSHLGVVSDGRYI 181
           A  + ++ YV  G+   D    H  +  +  N  +D++ M  DM  A    G+V     I
Sbjct: 108 ATTLGDMIYVSGGF---DGSRRHTSMERYDPN--IDQWSMLGDMQTAREGAGLVVASGVI 162
Query: 182 YIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR 241
           Y + G  G        +    D  T  W ++ P+ + R      L    ++V+GG     
Sbjct: 163 YCLGGYDGLNILNSVEK---YDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTA 219
Query: 242 HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFM 296
           H   +E ++I          +W T   +     +    V   RL+ + G +G+ +
Sbjct: 220 HLSSVEAYNIRT-------DSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSL 267

>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2 (mayven) Length = 302

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 6/144 (4%)
Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYG-SLDYVHSHVDVYNFTDNKWVDRFDMPKD 166
           EW  +      R       +  L Y   GY  +     S V+ YN T N+W    +M   
Sbjct: 135 EWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR 194
Query: 167 MAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQL 226
            + + +GV+++   +Y V G  GP  R       V D  T  W  +  +   R +     
Sbjct: 195 RSGAGVGVLNN--LLYAVGGHDGPLVRKSVE---VYDPTTNAWRQVADMNMCRRNAGVCA 249
Query: 227 WRGRLHVMGGSKENRHTPGLEHWS 250
             G L+V+GG   + +   +E+++
Sbjct: 250 VNGLLYVVGGDDGSCNLASVEYYN 273

>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small Molecular Based On A Co-crystallization Length = 309

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 12/178 (6%)
Query: 117 VPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176
           VPR    A ++  L Y   GY       S+++ YN +D  W+   D+   +  S L    
Sbjct: 14  VPRGSHMAPKVGRLIYTAGGY--FRQSLSYLEAYNPSDGTWLRLADL--QVPRSGLAGCV 69
Query: 177 DGRYIYIVSGQYG-PQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMG 235
            G  +Y V G+   P     +S     +  T +W    P+  PR      +  G ++ +G
Sbjct: 70  VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVG 129
Query: 236 GSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG 293
           GS    H   +E +       +     W    P+          V N  L+ VGG +G
Sbjct: 130 GSHGCIHHNSVERY-------EPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDG 180

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	390
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-32
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	7e-20
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-18
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	1e-26
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	3e-19
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	6e-18
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-26
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-21
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	1e-19
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	8e-18
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-11
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	4e-26
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	6e-22
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	5e-21
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-25
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	4e-24
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	8e-19
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	6e-13
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-08
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-24
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	3e-21
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	4e-24
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	1e-23
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	9e-18
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	9e-15
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	3e-04
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	3e-12
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	3e-12
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	7e-09
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	6e-04

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score =  124 bits (313), Expect = 1e-32
 Identities = 54/294 (18%), Positives = 89/294 (30%), Gaps = 50/294 (17%)

Query: 111 QMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHS 170
            +P  PVP   G      +  Y+  G         +       D KW      P      
Sbjct: 2   VLPETPVPFKSGTGAIDNDTVYIGLGSAG---TAWYKLDTQAKDKKWTALAAFPGGPRDQ 58

Query: 171 HLGVVSDGRYIYIVSGQYGPQCRGPTSRT--FVLDSETRKWDSI-PPLPSPRYSPATQLW 227
                 DG  +Y+  G                  + +T  W  +    P       T + 
Sbjct: 59  ATSAFIDGN-LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVH 117

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKA------------------------- 262
            G+ +V GG  +N      E  + A KD  A++K                          
Sbjct: 118 NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPST 177

Query: 263 --WRTEIPIPRGGPHRAC-FVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYM 319
             W      P  G   A      D+ +++ G+     AKPG        R + V+ ++  
Sbjct: 178 QQWSYAGESPWYGTAGAAVVNKGDKTWLINGE-----AKPGL-------RTDAVF-ELDF 224

Query: 320 LDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVF 373
             + +KW  L P+  P+        I N+S+I  GG       ++     G+ +
Sbjct: 225 TGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAG--FKGSRENYQNGKNY 276

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 88.8 bits (220), Expect = 7e-20
 Identities = 38/267 (14%), Positives = 72/267 (26%), Gaps = 30/267 (11%)

Query: 108 EWEQMPS-APVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKD 166
            W ++ S AP+              YV  G    +  + + +  N           +   
Sbjct: 97  SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQ-NIFNGYFEDLNEAGKDSTAIDKINAH 155

Query: 167 MAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP-SPRYSPATQ 225
                          Y                    D  T++W      P       A  
Sbjct: 156 ---------------YFDKKAEDY---FFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVV 197

Query: 226 LWRGRLHVMGG-SKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDR 284
               +  ++ G +K    T  +         G  L+      +  P G       + ND 
Sbjct: 198 NKGDKTWLINGEAKPGLRTDAVFELDF---TGNNLKWNKLAPVSSPDGVAGGFAGISNDS 254

Query: 285 LFVVGGQ--EGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECA 342
           L   GG   +G          +      +    D+++  +  KW     + +  ++    
Sbjct: 255 LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG-KWDKSGELSQGRAY--GV 311

Query: 343 WVIVNNSIIITGGTTEKHPMTKRMILV 369
            +  NNS++I GG T         +L+
Sbjct: 312 SLPWNNSLLIIGGETAGGKAVTDSVLI 338

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 85.4 bits (211), Expect = 1e-18
 Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 41/237 (17%)

Query: 76  RQRESVAVIDKK-----GQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNL 130
                  V + K     G +   F    F DL     +   +        D  A      
Sbjct: 109 MAGHVTFVHNGKAYVTGGVNQNIFNG-YFEDLNEAGKDSTAIDKINAHYFDKKA------ 161

Query: 131 FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGP 190
                 Y    ++      ++ +  +W    + P     +   VV+ G   ++++G+  P
Sbjct: 162 ----EDYFFNKFLL----SFDPSTQQWSYAGESPWY-GTAGAAVVNKGDKTWLINGEAKP 212

Query: 191 QCRGPTSRTFVLDSETRKWDSIPPLPSPRYS--PATQLWRGRLHVMGGS----------- 237
             R              KW+ + P+ SP         +    L   GG+           
Sbjct: 213 GLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQN 272

Query: 238 -KENRHTPGLEHWSIAVKDGKALEKAWR--TEIPIPRGGPHRACFVFNDRLFVVGGQ 291
            K   H    + +S  +      +  W    E+   R         +N+ L ++GG+
Sbjct: 273 GKNYAHEGLKKSYSTDIHLWHNGK--WDKSGELSQGRAYG--VSLPWNNSLLIIGGE 325

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score =  107 bits (269), Expect = 1e-26
 Identities = 48/258 (18%), Positives = 81/258 (31%), Gaps = 49/258 (18%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
            W Q+   P  R     + +  L +   G+     V + VD Y+   ++W    +M    
Sbjct: 41  RWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRT-VDSYDPVKDQWTSVANMRD-- 97

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
             S LG       +Y V G  G       S     + ++ +W  + P+ + R S    + 
Sbjct: 98  RRSTLGAAVLNGLLYAVGGFDG---STGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV 154

Query: 228 RGRLHVMGGSKENRHT---------PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRAC 278
            G L+ +GG                     W+               E+   R G     
Sbjct: 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTY------------IAEMSTRRSGA--GV 200

Query: 279 FVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNS 337
            V N+ L+ VGG +G  + K                  V + D     W+ +  M     
Sbjct: 201 GVLNNLLYAVGGHDGPLVRK-----------------SVEVYDPTTNAWRQVADMNMCRR 243

Query: 338 HIECAWVIVNNSIIITGG 355
           +       VN  + + GG
Sbjct: 244 N--AGVCAVNGLLYVVGG 259

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 86.2 bits (214), Expect = 3e-19
 Identities = 54/285 (18%), Positives = 90/285 (31%), Gaps = 44/285 (15%)

Query: 76  RQRESVAVIDKK-----GQDAERFLSATFA-DLPAPDLEWEQMPSAPVPRLDGAAIQIKN 129
           R R  +  +        G +    +    + D P  D +W  + +    R    A  +  
Sbjct: 52  RCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYD-PVKD-QWTSVANMRDRRSTLGAAVLNG 109

Query: 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYG 189
           L Y   G+       S V+ YN   N+W     M      S +GV   G  +Y V G Y 
Sbjct: 110 LLYAVGGFDGSTG-LSSVEAYNIKSNEWFHVAPMNT--RRSSVGVGVVGGLLYAVGG-YD 165

Query: 190 PQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHW 249
              R   S     ++ T +W  I  + + R      +    L+ +GG         +E +
Sbjct: 166 VASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVY 225

Query: 250 SIAVKDGKALEKAWRT--EIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCS 307
                       AWR   ++ + R          N  L+VVGG +G              
Sbjct: 226 DPT-------TNAWRQVADMNMCRRNA--GVCAVNGLLYVVGGDDGS------------- 263

Query: 308 RRHEVVYGDVYMLDDEM-KWKVLPP-MPKPNSHIECAWVIVNNSI 350
                    V   +    KW V+   M    S+      +++  +
Sbjct: 264 ----CNLASVEYYNPTTDKWTVVSSCMSTGRSYAGV--TVIDKRL 302

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 82.7 bits (205), Expect = 6e-18
 Identities = 39/237 (16%), Positives = 70/237 (29%), Gaps = 36/237 (15%)

Query: 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYI 181
              + +  L  V  G      + S V+ Y+F + +W    ++P        G+V     +
Sbjct: 9   RTPMNLPKLMVVVGGQAP-KAIRS-VECYDFKEERWHQVAELPS--RRCRAGMVYMAGLV 64

Query: 182 YIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR 241
           + V G  G             D    +W S+  +   R +    +  G L+ +GG   + 
Sbjct: 65  FAVGGFNG---SLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGST 121

Query: 242 HTPGLEHWSIAVKDGKALEKAWR--TEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKP 299
               +E ++I           W     +   R        V    L+ VGG         
Sbjct: 122 GLSSVEAYNIK-------SNEWFHVAPMNTRRSSV--GVGVVGGLLYAVGG--------- 163

Query: 300 GSPIFKCSRRHEVVYGDVYMLDDEM-KWKVLPPMPKPNSHIECAWVIVNNSIIITGG 355
                            V   +    +W  +  M    S       ++NN +   GG
Sbjct: 164 ------YDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG--AGVGVLNNLLYAVGG 212

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score =  106 bits (266), Expect = 2e-26
 Identities = 44/254 (17%), Positives = 79/254 (31%), Gaps = 40/254 (15%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK---WVDRFDMP 164
           EW  +PS    R   A++ + +  YV  GY     + S V+  ++T ++   W     M 
Sbjct: 42  EWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSS-VECLDYTADEDGVWYSVAPMN 100

Query: 165 KDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224
                   G  + G  IY+  G  G       +     D    +W  +  + + R     
Sbjct: 101 V--RRGLAGATTLGDMIYVSGGFDG---SRRHTSMERYDPNIDQWSMLGDMQTAREGAGL 155

Query: 225 QLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAW--RTEIPIPRGGPHRACFVFN 282
            +  G ++ +GG         +E +             W   T +   R G      + N
Sbjct: 156 VVASGVIYCLGGYDGLNILNSVEKYDPH-------TGHWTNVTPMATKRSGA--GVALLN 206

Query: 283 DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIEC 341
           D ++VVGG +G                       V   +     W  +  M  P  +   
Sbjct: 207 DHIYVVGGFDGT-----------------AHLSSVEAYNIRTDSWTTVTSMTTPRCY--V 247

Query: 342 AWVIVNNSIIITGG 355
              ++   +    G
Sbjct: 248 GATVLRGRLYAIAG 261

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 92.3 bits (230), Expect = 2e-21
 Identities = 49/277 (17%), Positives = 86/277 (31%), Gaps = 42/277 (15%)

Query: 76  RQRESVAVIDKK-----GQDAERFLSATFADLPAPD--LEWEQMPSAPVPRLDGAAIQIK 128
           R+  +   +  +     G D    LS+        D    W  +    V R    A  + 
Sbjct: 53  RRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLG 112

Query: 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQY 188
           ++ YV  G+       S ++ Y+   ++W    DM    A    G+V     IY + G  
Sbjct: 113 DMIYVSGGFDGSRRHTS-MERYDPNIDQWSMLGDMQT--AREGAGLVVASGVIYCLGGYD 169

Query: 189 GPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEH 248
           G       +     D  T  W ++ P+ + R      L    ++V+GG     H   +E 
Sbjct: 170 GLNI---LNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEA 226

Query: 249 WSIAVKDGKALEKAWRT--EIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKC 306
           ++I          +W T   +  PR        V   RL+ + G                
Sbjct: 227 YNIR-------TDSWTTVTSMTTPRCYV--GATVLRGRLYAIAG---------------- 261

Query: 307 SRRHEVVYGDVYMLDDEM-KWKVLPPMPKPNSHIECA 342
                 +   +   D  +  W+V+  M          
Sbjct: 262 -YDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVC 297

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 87.3 bits (217), Expect = 1e-19
 Identities = 42/220 (19%), Positives = 70/220 (31%), Gaps = 33/220 (15%)

Query: 76  RQRESVAVIDKK-----GQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNL 130
           R       +        G D  R  ++     P  D +W  +      R     +    +
Sbjct: 103 RGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNID-QWSMLGDMQTAREGAGLVVASGV 161

Query: 131 FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGP 190
            Y   GY  L+ ++S V+ Y+     W +   M      S  GV     +IY+V G  G 
Sbjct: 162 IYCLGGYDGLNILNS-VEKYDPHTGHWTNVTPMAT--KRSGAGVALLNDHIYVVGGFDGT 218

Query: 191 QCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHT------- 243
                 S     +  T  W ++  + +PR      + RGRL+ + G   N          
Sbjct: 219 AH---LSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYD 275

Query: 244 PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND 283
           P ++ W +             T +   R      C V  +
Sbjct: 276 PIIDSWEVV------------TSMGTQRCD-AGVC-VLRE 301

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 81.9 bits (203), Expect = 8e-18
 Identities = 44/237 (18%), Positives = 75/237 (31%), Gaps = 39/237 (16%)

Query: 132 YVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQ 191
            V  G+GS       V+ Y+    +W     +       ++  VS    IY++ G  G  
Sbjct: 18  LVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSIT--RKRRYVASVSLHDRIYVIGGYDG-- 73

Query: 192 CRGPTSRTFVLDSETRK---WDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEH 248
            R   S    LD    +   W S+ P+   R           ++V GG   +R    +E 
Sbjct: 74  -RSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMER 132

Query: 249 WSIAVKDGKALEKAWRT--EIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKC 306
           +             W    ++   R G      V +  ++ +GG +G  +          
Sbjct: 133 YDPN-------IDQWSMLGDMQTAREGA--GLVVASGVIYCLGGYDGLNILN-------- 175

Query: 307 SRRHEVVYGDVYMLDDEM-KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPM 362
                     V   D     W  + PM    S    A  ++N+ I + GG      +
Sbjct: 176 ---------SVEKYDPHTGHWTNVTPMATKRSGAGVA--LLNDHIYVVGGFDGTAHL 221

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 32/196 (16%), Positives = 65/196 (33%), Gaps = 31/196 (15%)

Query: 170 SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRG 229
           +   + ++   + +V G    Q   P       D +T++W  +P +   R   A+     
Sbjct: 7   TRARLGANEV-LLVVGGFGSQQS--PIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHD 63

Query: 230 RLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRT--EIPIPRGGPHRACFVFNDRLFV 287
           R++V+GG         +E       +    +  W +   + + RG    A     D ++V
Sbjct: 64  RIYVIGGYDGRSRLSSVECLDYTADE----DGVWYSVAPMNVRRGL-AGAT-TLGDMIYV 117

Query: 288 VGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEM-KWKVLPPMPKPNSHIECAWVIV 346
            GG +G                    +  +   D  + +W +L  M           V+ 
Sbjct: 118 SGGFDGS-----------------RRHTSMERYDPNIDQWSMLGDMQTAREG--AGLVVA 158

Query: 347 NNSIIITGGTTEKHPM 362
           +  I   GG    + +
Sbjct: 159 SGVIYCLGGYDGLNIL 174

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score =  105 bits (265), Expect = 4e-26
 Identities = 47/259 (18%), Positives = 78/259 (30%), Gaps = 49/259 (18%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSH---VDVYNFTDNKWVDRFDMP 164
            W ++    VPR   A   +  L Y   G  +    ++    +D YN   N+W     M 
Sbjct: 50  TWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS 109

Query: 165 KDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224
                + +GV     +IY V G +G       +     + E  +W  + P+ + R     
Sbjct: 110 V--PRNRIGVGVIDGHIYAVGGSHG---CIHHNSVERYEPERDEWHLVAPMLTRRIGVGV 164

Query: 225 QLWRGRLHVMGGSKENRHT-------PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRA 277
            +    L+ +GG              P    W +             T +   R G    
Sbjct: 165 AVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRM------------ITAMNTIRSGA--G 210

Query: 278 CFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEM-KWKVLPPMPKPN 336
             V ++ ++  GG +G                       V   D E   W  + PM    
Sbjct: 211 VCVLHNCIYAAGGYDGQDQLN-----------------SVERYDVETETWTFVAPMKHRR 253

Query: 337 SHIECAWVIVNNSIIITGG 355
           S       +    I + GG
Sbjct: 254 SA--LGITVHQGRIYVLGG 270

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 93.9 bits (234), Expect = 6e-22
 Identities = 45/279 (16%), Positives = 79/279 (28%), Gaps = 45/279 (16%)

Query: 76  RQRESVAVIDKK-----GQDAERFLSATFADL----PAPDLEWEQMPSAPVPRLDGAAIQ 126
           R   +  V+        G++     +   + L    P  + +W       VPR       
Sbjct: 61  RSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN-QWSPCAPMSVPRNRIGVGV 119

Query: 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSG 186
           I    Y   G     + +S V+ Y    ++W     M        +GV    R +Y V G
Sbjct: 120 IDGHIYAVGGSHGCIHHNS-VERYEPERDEWHLVAPML--TRRIGVGVAVLNRLLYAVGG 176

Query: 187 QYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGL 246
             G       +       E  +W  I  + + R      +    ++  GG         +
Sbjct: 177 FDGTNR---LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSV 233

Query: 247 EHWSIAVKDGKALEKAWRT--EIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIF 304
           E + +         + W     +   R        V   R++V+GG +G           
Sbjct: 234 ERYDVE-------TETWTFVAPMKHRRSAL--GITVHQGRIYVLGGYDG----------- 273

Query: 305 KCSRRHEVVYGDVYMLDDEM-KWKVLPPMPKPNSHIECA 342
                       V   D +   W  +  M    S +  A
Sbjct: 274 ------HTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVA 306

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 91.6 bits (228), Expect = 5e-21
 Identities = 52/259 (20%), Positives = 84/259 (32%), Gaps = 37/259 (14%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
                 S  VPR   A   +  L Y   GY       S+++ YN ++  W+   D+   +
Sbjct: 5   HHHHHSSGLVPRGSHAPK-VGRLIYTAGGYFR--QSLSYLEAYNPSNGTWLRLADLQ--V 59

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRT-FVLDSETRKWDSIPPLPSPRYSPATQL 226
             S L     G  +Y V G+         S      +  T +W    P+  PR      +
Sbjct: 60  PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV 119

Query: 227 WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWR--TEIPIPRGGPHRACFVFNDR 284
             G ++ +GGS    H   +E +             W     +   R G      V N  
Sbjct: 120 IDGHIYAVGGSHGCIHHNSVERYEPE-------RDEWHLVAPMLTRRIGV--GVAVLNRL 170

Query: 285 LFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEM-KWKVLPPMPKPNSHIECAW 343
           L+ VGG +G                 E  Y        E  +W+++  M    S      
Sbjct: 171 LYAVGGFDGT----------NRLNSAE-CY------YPERNEWRMITAMNTIRSGAGVC- 212

Query: 344 VIVNNSIIITGGTTEKHPM 362
            +++N I   GG   +  +
Sbjct: 213 -VLHNCIYAAGGYDGQDQL 230

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score =  103 bits (260), Expect = 2e-25
 Identities = 50/260 (19%), Positives = 79/260 (30%), Gaps = 51/260 (19%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
            W  +      R D A +   N+ Y+  G          +D YN   + W  +   P   
Sbjct: 35  SWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPI--KRMDCYNVVKDSWYSKLGPP--T 90

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
               L   +    IY   G             +  D+ T  W + P + + R S      
Sbjct: 91  PRDSLAACAAEGKIYTSGGSEVGNSALYLFECY--DTRTESWHTKPSMLTQRCSHGMVEA 148

Query: 228 RGRLHVMGGSKENRHT-----------PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHR 276
            G ++V GGS  N  +           P  E W+                +   R     
Sbjct: 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE------------LCPMIEARKNH-- 194

Query: 277 ACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKP 335
                 D++F VGGQ G                      +V   D    +WK++ PMP  
Sbjct: 195 GLVFVKDKIFAVGGQNGL-----------------GGLDNVEYYDIKLNEWKMVSPMPWK 237

Query: 336 NSHIECAWVIVNNSIIITGG 355
              ++CA   V + + +  G
Sbjct: 238 GVTVKCA--AVGSIVYVLAG 255

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score =  100 bits (250), Expect = 4e-24
 Identities = 43/281 (15%), Positives = 74/281 (26%), Gaps = 39/281 (13%)

Query: 76  RQRESVAVIDKK-----GQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNL 130
           R+  +    D       G            +    D  W      P PR   AA   +  
Sbjct: 46  RRDAACVFWDNVVYILGGSQLFPIKRMDCYN-VVKD-SWYSKLGPPTPRDSLAACAAEGK 103

Query: 131 FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGP 190
            Y   G    +      + Y+     W  +  M         G+V     IY+  G  G 
Sbjct: 104 IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT--QRCSHGMVEANGLIYVCGGSLGN 161

Query: 191 QCRGPTSRT-FVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHW 249
              G    +  V D  T  W  + P+   R +      + ++  +GG         +E++
Sbjct: 162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYY 221

Query: 250 SIAVKDGKALEKAWRT--EIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCS 307
            I           W+    +P         C      ++V+ G +G              
Sbjct: 222 DIK-------LNEWKMVSPMPWKGVTV--KCAAVGSIVYVLAGFQG-------------- 258

Query: 308 RRHEVVYGDVYMLDDEM-KWKVLPPMPKPNSHIECAWVIVN 347
                  G +   + E  KW     +           V+  
Sbjct: 259 ---VGRLGHILEYNTETDKWVANSKVRAFPVTSCLICVVDT 296

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 85.1 bits (211), Expect = 8e-19
 Identities = 42/244 (17%), Positives = 61/244 (25%), Gaps = 49/244 (20%)

Query: 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQ 187
                +F G             +N  D  W D               V     +YI+ G 
Sbjct: 12  DYRIALFGGSQP-----QSCRYFNPKDYSWTDIRCPF--EKRRDAACVFWDNVVYILGGS 64

Query: 188 YGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHT---- 243
                  P  R    +     W S    P+PR S A     G+++  GGS+         
Sbjct: 65  QL----FPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLF 120

Query: 244 ----PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKP 299
                  E W                 +   R          N  ++V GG  G      
Sbjct: 121 ECYDTRTESWHTK------------PSMLTQRCSH--GMVEANGLIYVCGGSLG------ 160

Query: 300 GSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTE 358
                  +     V     + D     W  L PM +   +     V V + I   GG   
Sbjct: 161 -------NNVSGRVLNSCEVYDPATETWTELCPMIEARKN--HGLVFVKDKIFAVGGQNG 211

Query: 359 KHPM 362
              +
Sbjct: 212 LGGL 215

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 68.1 bits (167), Expect = 6e-13
 Identities = 23/136 (16%), Positives = 50/136 (36%), Gaps = 9/136 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
            W ++      R +   + +K+  +   G   L  + + V+ Y+   N+W     MP   
Sbjct: 180 TWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDN-VEYYDIKLNEWKMVSPMP--W 236

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
               +   + G  +Y+++G  G    G        ++ET KW +   + +   +      
Sbjct: 237 KGVTVKCAAVGSIVYVLAGFQGV---GRLGHILEYNTETDKWVANSKVRAFPVTSCLI-- 291

Query: 228 RGRLHVMGGSKENRHT 243
              +   G ++E   T
Sbjct: 292 -CVVDTCGANEETLET 306

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 29/198 (14%), Positives = 47/198 (23%), Gaps = 46/198 (23%)

Query: 176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMG 235
                I +  G                + +   W  I      R   A   W   ++++G
Sbjct: 10  KHDYRIALFGGS-------QPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILG 62

Query: 236 GSKENRHT------PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVG 289
           GS+              + W                  P PR     AC     +++  G
Sbjct: 63  GSQLFPIKRMDCYNVVKDSWYSK------------LGPPTPRDS-LAAC-AAEGKIYTSG 108

Query: 290 GQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNN 348
           G E       G+                   D     W   P M           V  N 
Sbjct: 109 GSEV------GNSALY----------LFECYDTRTESWHTKPSMLTQRCS--HGMVEANG 150

Query: 349 SIIITGGTTEKHPMTKRM 366
            I + GG+   +   + +
Sbjct: 151 LIYVCGGSLGNNVSGRVL 168

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score =  101 bits (253), Expect = 2e-24
 Identities = 44/282 (15%), Positives = 82/282 (29%), Gaps = 56/282 (19%)

Query: 88  GQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGY-----GSLDY 142
            + A  +      D PA +  +    S+ VP+   + +  +N  +V  G         D 
Sbjct: 12  EEGAVAY------D-PAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDP 64

Query: 143 VHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL 202
           + ++   ++  D++W+    +P        G+      IY+V G+               
Sbjct: 65  MSAYFLQFDHLDSEWLGMPPLPS--PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCY 122

Query: 203 DSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHT--------PGLEHWSIAVK 254
           D  + KW    PLP   Y          ++V+GG   +R          P    W     
Sbjct: 123 DRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE--- 179

Query: 255 DGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVY 314
                       +   R        V + R+ V  G                      + 
Sbjct: 180 ---------LAPMQTARSLF--GATVHDGRIIVAAGVTD-----------------TGLT 211

Query: 315 GDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGG 355
               +    + KW      P+  S    + V +  ++   GG
Sbjct: 212 SSAEVYSITDNKWAPFEAFPQERS--SLSLVSLVGTLYAIGG 251

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 92.1 bits (229), Expect = 3e-21
 Identities = 37/191 (19%), Positives = 56/191 (29%), Gaps = 13/191 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
           +W +    P        +   +L YV  G GS     + + VY+    +W +   M    
Sbjct: 128 KWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ--T 185

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
           A S  G       I + +G         TS   V      KW      P  R S +    
Sbjct: 186 ARSLFGATVHDGRIIVAAGVTDTGL---TSSAEVYSITDNKWAPFEAFPQERSSLSLVSL 242

Query: 228 RGRLHVMGGSKENRHTPGLEHW----SIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND 283
            G L+ +GG        G         I   + +  EK W   +                
Sbjct: 243 VGTLYAIGGFATLETESGELVPTELNDIWRYNEE--EKKWEGVLREIA--YAAGATFLPV 298

Query: 284 RLFVVGGQEGD 294
           RL V+   +  
Sbjct: 299 RLNVLRLTKMA 309

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score =  100 bits (251), Expect = 4e-24
 Identities = 51/299 (17%), Positives = 88/299 (29%), Gaps = 61/299 (20%)

Query: 75  DRQRESVAVIDK----KGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNL 130
           D  R  + V D         A  +      D P  +  +    +  +PR   + +  +N 
Sbjct: 6   DIPRHGMFVKDLILLVNDTAAVAY------D-PMENECYLTALAEQIPRNHSSIVTQQNQ 58

Query: 131 FYVFAGY-----GSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVS 185
            YV  G           + S+    +   ++WV    +P   A    G+      IY+V+
Sbjct: 59  VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPS--ARCLFGLGEVDDKIYVVA 116

Query: 186 GQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHT-- 243
           G    Q           D    KW  +  LP   Y        G ++ +GG  +++    
Sbjct: 117 G-KDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTN 175

Query: 244 ------PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMA 297
                 P    W                 +  PR        +   ++ + GG   D   
Sbjct: 176 RVFIYNPKKGDWKD------------LAPMKTPRSMF--GVAIHKGKIVIAGGVTED--- 218

Query: 298 KPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGG 355
                          +   V   D    KW+V+   P+  S    + V +  S+   GG
Sbjct: 219 --------------GLSASVEAFDLKTNKWEVMTEFPQERS--SISLVSLAGSLYAIGG 261

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 99.0 bits (247), Expect = 1e-23
 Identities = 47/276 (17%), Positives = 95/276 (34%), Gaps = 35/276 (12%)

Query: 76  RQRESVAVIDKK----------GQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAI 125
           R   S+     +           ++ ++ L + F  L     EW  +P  P  R      
Sbjct: 47  RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLG 106

Query: 126 QIKNLFYVFAGY-GSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIV 184
           ++ +  YV AG     +     V  Y+    KW +  ++P         V+S    IY +
Sbjct: 107 EVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI--KVYGHNVISHNGMIYCL 164

Query: 185 SGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTP 244
            G+   +    T+R F+ + +   W  + P+ +PR      + +G++ + GG  E+  + 
Sbjct: 165 GGKTDDKKC--TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSA 222

Query: 245 GLEHWSIAVKDGKALEKAWRT--EIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSP 302
            +E + +           W    E P  R     +       L+ +GG            
Sbjct: 223 SVEAFDLK-------TNKWEVMTEFPQERSSI--SLVSLAGSLYAIGGFAMIQ------- 266

Query: 303 IFKCSRRHEVVYGDVYMLDDEM-KWKVLPPMPKPNS 337
             +          D++  +D+  +W  +    +  S
Sbjct: 267 -LESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRYAS 301

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 82.4 bits (204), Expect = 9e-18
 Identities = 42/230 (18%), Positives = 68/230 (29%), Gaps = 35/230 (15%)

Query: 76  RQRESVAVIDKK-----GQD---------AERFLSATFADLPAPDLEWEQMPSAPVPRLD 121
           R    +  +D K     G+D            +             +W ++ + P+    
Sbjct: 100 RCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAA--------KWSEVKNLPIKVYG 151

Query: 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYI 181
              I    + Y   G        + V +YN     W D   M      S  GV      I
Sbjct: 152 HNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK--TPRSMFGVAIHKGKI 209

Query: 182 YIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGG----S 237
            I  G         ++     D +T KW+ +   P  R S +     G L+ +GG     
Sbjct: 210 VIAGGVTEDGL---SASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQ 266

Query: 238 KENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
            E++     E   I   +    +K W   +   R     A      RL +
Sbjct: 267 LESKEFAPTEVNDIWKYEDD--KKEWAGMLKEIRYA-SGAS-CLATRLNL 312

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 73.5 bits (181), Expect = 9e-15
 Identities = 48/226 (21%), Positives = 80/226 (35%), Gaps = 36/226 (15%)

Query: 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRG---PTSRTFV 201
           +    Y+  +N+          +  +H  +V+    +Y+V G Y  +        S  F 
Sbjct: 24  TAAVAYDPMENECYLTALAE-QIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQ 82

Query: 202 LDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGS--KENRHTPGLEHWSIAVKDGKAL 259
           LD+ + +W  +PPLPS R          +++V+ G   +       +  +          
Sbjct: 83  LDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPV------- 135

Query: 260 EKAWR--TEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDV 317
              W     +PI   G        N  ++ +GG+  D          KC+ R   +Y   
Sbjct: 136 AAKWSEVKNLPIKVYGH--NVISHNGMIYCLGGKTDD---------KKCTNRVF-IY--- 180

Query: 318 YMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPM 362
              +  +  WK L PM  P S    A  I    I+I GG TE    
Sbjct: 181 ---NPKKGDWKDLAPMKTPRSMFGVA--IHKGKIVIAGGVTEDGLS 221

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 16/124 (12%)

Query: 76  RQRESVAVIDKK-----GQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNL 130
           R    VA+   K     G   +   ++  A     + +WE M   P  R   + + +   
Sbjct: 197 RSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTN-KWEVMTEFPQERSSISLVSLAGS 255

Query: 131 FYVFAGYGSLDYVH--------SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIY 182
            Y   G+  +            + +  Y     +W            S    ++    ++
Sbjct: 256 LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEI--RYASGASCLATRLNLF 313

Query: 183 IVSG 186
            +S 
Sbjct: 314 KLSK 317

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 67.1 bits (163), Expect = 3e-12
 Identities = 41/264 (15%), Positives = 78/264 (29%), Gaps = 41/264 (15%)

Query: 113 PSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW------VDRFDMPKD 166
              P+ R  G      N  +   G     Y  + +   +   +K       V   ++P  
Sbjct: 382 CECPINRKFGDVDVAGNDVFYMGGSN--PYRVNEILQLSIHYDKIDMKNIEVSSSEVPVA 439

Query: 167 -MAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSP-AT 224
            M H+    +S    + ++ G+  P      S  ++ D +TR+W  I  L   R+   A 
Sbjct: 440 RMCHT-FTTISRNNQLLLIGGRKAPH--QGLSDNWIFDMKTREWSMIKSLSHTRFRHSAC 496

Query: 225 QLWRGRLHVMGGSKEN----RHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACF- 279
            L  G + ++GG  E      +    E +          +   + E            F 
Sbjct: 497 SLPDGNVLILGGVTEGPAMLLYNVTEEIFK---------DVTPKDEFFQNSLVSAGLEFD 547

Query: 280 -VFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSH 338
            V    + + GG                     +++      +      V+  +  P   
Sbjct: 548 PVSKQGIILGGGFMDQ----------TTVSDKAIIF-KYDAENATEPITVIKKLQHPLFQ 596

Query: 339 IEC--AWVIVNNSIIITGGTTEKH 360
                   I    ++I GGT+   
Sbjct: 597 RYGSQIKYITPRKLLIVGGTSPSG 620

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 67.1 bits (163), Expect = 3e-12
 Identities = 26/199 (13%), Positives = 51/199 (25%), Gaps = 20/199 (10%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKN-LFYVFAGYGSLDYVHSHVDVYNFTDNKW----VDRFD 162
           EW  + S    R   +A  + +    +  G      +     +YN T+  +         
Sbjct: 479 EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAML----LYNVTEEIFKDVTPKDEF 534

Query: 163 MPKDMAHSHLGVVSDGRYIYIVSGQYGPQ-CRGPTSRTFVLDSETRKW-----DSIPPLP 216
               +  + L      +   I+ G +  Q      +  F  D+E           +    
Sbjct: 535 FQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPL 594

Query: 217 SPRYS-PATQLWRGRLHVMGG-SKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGP 274
             RY      +   +L ++GG S            S+               I       
Sbjct: 595 FQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLM 654

Query: 275 ---HRACFVFNDRLFVVGG 290
                        + ++GG
Sbjct: 655 LAGFSLVSTSMGTIHIIGG 673

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 56.5 bits (135), Expect = 7e-09
 Identities = 38/338 (11%), Positives = 94/338 (27%), Gaps = 26/338 (7%)

Query: 34  FMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAER 93
              +  + +F  S   +++ S+W      V                     + +      
Sbjct: 202 MWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGG 261

Query: 94  FLSATFADLPAPDLEWEQMPSAPVPRLD-GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNF 152
             +   +   +    W   P   V R    +A       +   G  S      + +VY+ 
Sbjct: 262 NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP 321

Query: 153 TDNKWVDRFDMPKDM--AHSHLGVVSDGRYIYIVSGQYGP--QCRGPTSRTFVLDSETRK 208
           +   W    +   +        G+     + ++   + G   Q    T+  +   S +  
Sbjct: 322 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD 381

Query: 209 WDSIPPLPSPRYSPATQL---------WRGRLHVMGGSKENRHTPGLEH-WSIAVKDGKA 258
             S     S R      +          +G++   GGS + + +    +   I + +   
Sbjct: 382 VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGT 441

Query: 259 LEKAWRTEIPIPRG-GPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDV 317
                     +      H +  + +   F+ GGQ      +  +P+F             
Sbjct: 442 SPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFT----------PE 491

Query: 318 YMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGG 355
             + ++  +    P      +   + ++ +  +   GG
Sbjct: 492 IYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGG 529

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 40.7 bits (94), Expect = 6e-04
 Identities = 27/205 (13%), Positives = 58/205 (28%), Gaps = 22/205 (10%)

Query: 109 WEQMPSAPVPRL---DGAAIQIKNLF-YVFAGYGS--LDYVHSHVDVYNFTDNKWV---- 158
           W  +P+A V  +   D   +   +   ++F            S    + +T         
Sbjct: 326 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA 385

Query: 159 -----DRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD-----SETRK 208
                +R   P  M  + +   +    I    G    Q    T+   ++      +    
Sbjct: 386 GKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT 445

Query: 209 WDSIPPLPSPR-YSPATQLWRGRLHVMGGSKENRHTPGLE-HWSIAVKDGKALEKAWRTE 266
             +   L   R +  +  L  G   + GG +           ++  +   +      +  
Sbjct: 446 VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP 505

Query: 267 IPIPRGGPHRACFVFNDRLFVVGGQ 291
             I R     +  + + R+F  GG 
Sbjct: 506 NSIVRVYHSISLLLPDGRVFNGGGG 530

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	390
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	100.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	100.0
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.84
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.72
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.69
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.61
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.37
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.35
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.31
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.28
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.27
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.22
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.19
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.15
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.12
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.92
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.9
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.89
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.85
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.79
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.77
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.75
3jro_A	753	Fusion protein of protein transport protein SEC13	96.67
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.66
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.65
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.64
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.54
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	96.45
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	96.4
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	96.39
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.36
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.35
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	96.33
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.31
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.29
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	96.24
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	96.23
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	96.2
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.19
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.19
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	96.08
3jro_A	753	Fusion protein of protein transport protein SEC13	96.04
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.03
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.99
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	95.86
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	95.85
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	95.79
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	95.73
2pm7_B	297	Protein transport protein SEC13, protein transport	95.73
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	95.72
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.72
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	95.72
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	95.67
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	95.66
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.64
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	95.63
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	95.57
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.57
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	95.41
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	95.35
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	95.26
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	95.2
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	95.19
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	95.16
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.16
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	95.14
4a2l_A	795	BT_4663, two-component system sensor histidine kin	95.13
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	95.09
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	95.08
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	95.07
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.05
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	95.01
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	94.95
2pm7_B	297	Protein transport protein SEC13, protein transport	94.91
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	94.75
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	94.68
3ow8_A	321	WD repeat-containing protein 61; structural genomi	94.66
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	94.66
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	94.65
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	94.58
4a2l_A	795	BT_4663, two-component system sensor histidine kin	94.56
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	94.55
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	94.51
3v9f_A	781	Two-component system sensor histidine kinase/RESP	94.45
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	94.4
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	94.3
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	94.27
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	94.2
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	94.12
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	94.06
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	94.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	93.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	93.84
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	93.83
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	93.71
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	93.7
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	93.48
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	93.43
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	93.39
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	93.37
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	93.37
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	93.35
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	93.34
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	93.33
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	93.02
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	93.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	92.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	92.86
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	92.83
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	92.68
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	92.64
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	92.58
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	92.55
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	92.52
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	92.43
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	92.42
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	92.41
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.38
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	92.3
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.07
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	91.93
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	91.75
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	91.67
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	91.53
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	91.52
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	91.46
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	91.42
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	91.37
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	91.34
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	91.29
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	91.27
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	91.26
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	91.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	90.98
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	90.84
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	90.77
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	90.68
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	90.63
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	90.53
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	90.49
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	90.33
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	90.3
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	90.28
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	90.26
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	90.06
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	89.98
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	89.66
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	89.58
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	89.37
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	89.34
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	89.14
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	89.12
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	88.46
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	88.25
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	88.23
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	88.12
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	88.03
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	87.9
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	87.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	87.62
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	86.79
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	86.76
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	86.66
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	86.15
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	85.69
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	85.6
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	85.52
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	85.49
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	85.37
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	85.18
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	85.09
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	84.37
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	84.33
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	83.88
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	83.64
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	83.14
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	83.06
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	83.05
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	82.99
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	82.84
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	82.55
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	82.15
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	81.77
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	81.5
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	81.35
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	80.77
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	80.66
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	80.5

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=7.3e-49  Score=363.06  Aligned_cols=291  Identities=19%  Similarity=0.299  Sum_probs=234.3

Q ss_pred             cCCccccccchhhHHHHHHHHHHHhhccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEec
Q 016413            6 HHNKHTYTKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVID   85 (390)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~   85 (390)
                      ||-.|..+-      ..+-.|+++.+++.||++||. .+   ..++++                                
T Consensus         4 ~~~~~~~~~------~~~~~~~~~~~~~~i~v~GG~-~~---~~~~~~--------------------------------   41 (308)
T 1zgk_A            4 HHHHHHSSG------LVPRGSHAPKVGRLIYTAGGY-FR---QSLSYL--------------------------------   41 (308)
T ss_dssp             -----------------------CCCCCCEEEECCB-SS---SBCCCE--------------------------------
T ss_pred             cccccccCC------eeeCCccccCCCCEEEEEeCc-CC---CCcceE--------------------------------
Confidence            555555443      345689999999999999998 22   233444                                


Q ss_pred             CCCchhHHHhhhcccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCC---CCCCCCCeEEEEeCCCCceeecCC
Q 016413           86 KKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYG---SLDYVHSHVDVYNFTDNKWVDRFD  162 (390)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~---~~~~~~~~v~~yd~~~~~W~~~~~  162 (390)
                                    +.||+.+++|+.++++|.+|..|++++++++|||+||..   .....++++++||+.+++|+.+++
T Consensus        42 --------------~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~  107 (308)
T 1zgk_A           42 --------------EAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP  107 (308)
T ss_dssp             --------------EEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC
T ss_pred             --------------EEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCC
Confidence                          445555566666666788899999999999999999983   223356889999999999999999


Q ss_pred             CCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCC
Q 016413          163 MPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRH  242 (390)
Q Consensus       163 l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  242 (390)
                      ||.  +|..+++++++++|||+||.++..   ..+++++||+.+++|+.++++|.+|..|++++++++|||+||......
T Consensus       108 ~p~--~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  182 (308)
T 1zgk_A          108 MSV--PRNRIGVGVIDGHIYAVGGSHGCI---HHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR  182 (308)
T ss_dssp             CSS--CCBTCEEEEETTEEEEECCEETTE---ECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCB
T ss_pred             CCc--CccccEEEEECCEEEEEcCCCCCc---ccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCc
Confidence            887  588999999999999999987643   378999999999999999999999999999999999999999887665


Q ss_pred             CCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-
Q 016413          243 TPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-  321 (390)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-  321 (390)
                      .+.+++||       +.+++|+.++++|.+|..+++++++++|||+||.++..                 .++++++|| 
T Consensus       183 ~~~~~~yd-------~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~v~~yd~  238 (308)
T 1zgk_A          183 LNSAECYY-------PERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQD-----------------QLNSVERYDV  238 (308)
T ss_dssp             CCCEEEEE-------TTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSS-----------------BCCCEEEEET
T ss_pred             CceEEEEe-------CCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCC-----------------ccceEEEEeC
Confidence            66677776       68999999999999999999999999999999987532                 367899999 


Q ss_pred             CCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeeccCCCC
Q 016413          322 DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYRPPK  390 (390)
Q Consensus       322 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~P~  390 (390)
                      .+++|+.++++|.+|..+  +++.++++|||+||.+...       .++++++||+++++|..++.+|.
T Consensus       239 ~~~~W~~~~~~p~~r~~~--~~~~~~~~i~v~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~p~  298 (308)
T 1zgk_A          239 ETETWTFVAPMKHRRSAL--GITVHQGRIYVLGGYDGHT-------FLDSVECYDPDTDTWSEVTRMTS  298 (308)
T ss_dssp             TTTEEEECCCCSSCCBSC--EEEEETTEEEEECCBCSSC-------BCCEEEEEETTTTEEEEEEECSS
T ss_pred             CCCcEEECCCCCCCccce--EEEEECCEEEEEcCcCCCc-------ccceEEEEcCCCCEEeecCCCCC
Confidence            788999999999988765  4578899999999987654       56799999999999999998884

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.2e-46  Score=345.33  Aligned_cols=287  Identities=17%  Similarity=0.276  Sum_probs=240.4

Q ss_pred             HHHhhccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCC----CchhHHHhhhccccc
Q 016413           27 GAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKK----GQDAERFLSATFADL  102 (390)
Q Consensus        27 ~~~~~~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~  102 (390)
                      ..+.+++.||++||..    ...++++++||+.+++|..++.++.+   |..++++++++.    |.........+++.|
T Consensus        10 ~~~~~~~~i~v~GG~~----~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~   82 (302)
T 2xn4_A           10 TPMNLPKLMVVVGGQA----PKAIRSVECYDFKEERWHQVAELPSR---RCRAGMVYMAGLVFAVGGFNGSLRVRTVDSY   82 (302)
T ss_dssp             -----CEEEEEECCBS----SSBCCCEEEEETTTTEEEEECCCSSC---CBSCEEEEETTEEEEESCBCSSSBCCCEEEE
T ss_pred             cccCCCCEEEEECCCC----CCCCCcEEEEcCcCCcEeEcccCCcc---cccceEEEECCEEEEEeCcCCCccccceEEE
Confidence            3455789999999982    23678899999999999999988877   999988877655    221111223489999


Q ss_pred             ccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEE
Q 016413          103 PAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIY  182 (390)
Q Consensus       103 ~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iy  182 (390)
                      |+.+++|+.++++|.+|..|++++++++|||+||.+... .++++++||+.+++|+.++++|.  +|..+++++.+++||
T Consensus        83 d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~iy  159 (302)
T 2xn4_A           83 DPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVAPMNT--RRSSVGVGVVGGLLY  159 (302)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEECCCSS--CCBSCEEEEETTEEE
T ss_pred             CCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecCCCCC--cccCceEEEECCEEE
Confidence            999999999999999999999999999999999987644 46889999999999999999887  588999999999999


Q ss_pred             EEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCC
Q 016413          183 IVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKA  262 (390)
Q Consensus       183 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (390)
                      ++||.+.... ...+++++||+.+++|+.+++||.+|..|++++++++|||+||.........+++||       +.+++
T Consensus       160 v~GG~~~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd-------~~~~~  231 (302)
T 2xn4_A          160 AVGGYDVASR-QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYD-------PTTNA  231 (302)
T ss_dssp             EECCEETTTT-EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEE-------TTTTE
T ss_pred             EEeCCCCCCC-ccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEe-------CCCCC
Confidence            9999976532 247899999999999999999999999999999999999999987766666777777       68999


Q ss_pred             eEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECC-CCCCCCCcce
Q 016413          263 WRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP-PMPKPNSHIE  340 (390)
Q Consensus       263 W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~-~~~~~~~~~~  340 (390)
                      |+.++++|.+|..+++++++++|||+||.++.                 ..++++++|| .+++|+.++ .||.+|..++
T Consensus       232 W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~-----------------~~~~~v~~yd~~~~~W~~~~~~~~~~r~~~~  294 (302)
T 2xn4_A          232 WRQVADMNMCRRNAGVCAVNGLLYVVGGDDGS-----------------CNLASVEYYNPTTDKWTVVSSCMSTGRSYAG  294 (302)
T ss_dssp             EEEECCCSSCCBSCEEEEETTEEEEECCBCSS-----------------SBCCCEEEEETTTTEEEECSSCCSSCCBSCE
T ss_pred             EeeCCCCCCccccCeEEEECCEEEEECCcCCC-----------------cccccEEEEcCCCCeEEECCcccCcccccce
Confidence            99999999999999999999999999998654                 2467899999 788999997 8999987654


Q ss_pred             eEEEEECCEE
Q 016413          341 CAWVIVNNSI  350 (390)
Q Consensus       341 ~~~~~~~~~l  350 (390)
                        +++++++|
T Consensus       295 --~~~~~~~i  302 (302)
T 2xn4_A          295 --VTVIDKRL  302 (302)
T ss_dssp             --EEEEEC--
T ss_pred             --EEEecccC
Confidence              46666664

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=5.1e-46  Score=342.62  Aligned_cols=253  Identities=17%  Similarity=0.306  Sum_probs=220.8

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCc---eeecCCCCCCCCCcceEE
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK---WVDRFDMPKDMAHSHLGV  174 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~---W~~~~~l~~~~~r~~~~~  174 (390)
                      +++.||+.+++|+.++++|.+|..|++++++++|||+||.+... .++++++||+.+++   |+.++++|.  +|..|++
T Consensus        32 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~d~~~~~~~~W~~~~~~p~--~r~~~~~  108 (301)
T 2vpj_A           32 VVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRS-RLSSVECLDYTADEDGVWYSVAPMNV--RRGLAGA  108 (301)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTCCTTCCCEEECCCSS--CCBSCEE
T ss_pred             EEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCc-cCceEEEEECCCCCCCeeEECCCCCC--CccceeE
Confidence            45555556667777777788899999999999999999988543 56889999999999   999999887  5889999


Q ss_pred             EEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeee
Q 016413          175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVK  254 (390)
Q Consensus       175 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  254 (390)
                      ++.+++||++||.++..   ..+++++||+.+++|+.++++|.+|..|++++++++||++||.......+.+++||    
T Consensus       109 ~~~~~~lyv~GG~~~~~---~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d----  181 (301)
T 2vpj_A          109 TTLGDMIYVSGGFDGSR---RHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYD----  181 (301)
T ss_dssp             EEETTEEEEECCBCSSC---BCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEE----
T ss_pred             EEECCEEEEEcccCCCc---ccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEe----
Confidence            99999999999987643   37899999999999999999999999999999999999999988766667777777    


Q ss_pred             ccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCC
Q 016413          255 DGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMP  333 (390)
Q Consensus       255 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~  333 (390)
                         +.+++|+.++++|.+|..+++++++++|||+||.+...                 .++++++|| .+++|+.++++|
T Consensus       182 ---~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p  241 (301)
T 2vpj_A          182 ---PHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTA-----------------HLSSVEAYNIRTDSWTTVTSMT  241 (301)
T ss_dssp             ---TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSS-----------------BCCCEEEEETTTTEEEEECCCS
T ss_pred             ---CCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCc-----------------ccceEEEEeCCCCcEEECCCCC
Confidence               68999999999999999999999999999999987542                 367899999 788999999999


Q ss_pred             CCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeeccCCC
Q 016413          334 KPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYRPP  389 (390)
Q Consensus       334 ~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~P  389 (390)
                      .+|..+  +++.++++|||+||.+...       .++++++||+++++|..++.+|
T Consensus       242 ~~r~~~--~~~~~~~~i~v~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~~  288 (301)
T 2vpj_A          242 TPRCYV--GATVLRGRLYAIAGYDGNS-------LLSSIECYDPIIDSWEVVTSMG  288 (301)
T ss_dssp             SCCBSC--EEEEETTEEEEECCBCSSS-------BEEEEEEEETTTTEEEEEEEEE
T ss_pred             Ccccce--eEEEECCEEEEEcCcCCCc-------ccccEEEEcCCCCeEEEcCCCC
Confidence            998765  4578899999999987664       5679999999999999998877

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=6.5e-46  Score=342.81  Aligned_cols=255  Identities=19%  Similarity=0.346  Sum_probs=226.7

Q ss_pred             hcccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE
Q 016413           97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS  176 (390)
Q Consensus        97 ~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~  176 (390)
                      .+++.||+.+++|+.++++|.+|..|++++++++|||+||.+  ...++++++||+.+++|+.++++|.  +|..|++++
T Consensus        24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~   99 (306)
T 3ii7_A           24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKLGPPT--PRDSLAACA   99 (306)
T ss_dssp             TSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBS--SSBCCEEEEEETTTTEEEEEECCSS--CCBSCEEEE
T ss_pred             ceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCC--CCCcceEEEEeCCCCeEEECCCCCc--cccceeEEE
Confidence            489999999999999999999999999999999999999988  4457899999999999999999887  688999999


Q ss_pred             eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCC----CCCcceEEee
Q 016413          177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRH----TPGLEHWSIA  252 (390)
Q Consensus       177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~----~~~~~~~~~~  252 (390)
                      ++++|||+||.+...  ...+++++||+.+++|+.+++||.+|..|++++++++|||+||......    .+++++||  
T Consensus       100 ~~~~iyv~GG~~~~~--~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd--  175 (306)
T 3ii7_A          100 AEGKIYTSGGSEVGN--SALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYD--  175 (306)
T ss_dssp             ETTEEEEECCBBTTB--SCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEE--
T ss_pred             ECCEEEEECCCCCCC--cEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeC--
Confidence            999999999987332  3479999999999999999999999999999999999999999865543    56666666  


Q ss_pred             eeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCC
Q 016413          253 VKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPP  331 (390)
Q Consensus       253 ~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~  331 (390)
                           +.+++|+.++++|.+|..+++++++++|||+||.+..                 ..++++++|| .+++|+.+++
T Consensus       176 -----~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~-----------------~~~~~~~~yd~~~~~W~~~~~  233 (306)
T 3ii7_A          176 -----PATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGL-----------------GGLDNVEYYDIKLNEWKMVSP  233 (306)
T ss_dssp             -----TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETT-----------------EEBCCEEEEETTTTEEEECCC
T ss_pred             -----CCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCC-----------------CCCceEEEeeCCCCcEEECCC
Confidence                 7899999999999999999999999999999997653                 3467899999 7889999999


Q ss_pred             CCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeeccCCCC
Q 016413          332 MPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYRPPK  390 (390)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~P~  390 (390)
                      +|.+|..+  +++.++++|||+||.++..       .++++++||+++++|..++.+|.
T Consensus       234 ~p~~r~~~--~~~~~~~~i~v~GG~~~~~-------~~~~~~~yd~~~~~W~~~~~~~~  283 (306)
T 3ii7_A          234 MPWKGVTV--KCAAVGSIVYVLAGFQGVG-------RLGHILEYNTETDKWVANSKVRA  283 (306)
T ss_dssp             CSCCBSCC--EEEEETTEEEEEECBCSSS-------BCCEEEEEETTTTEEEEEEEEEC
T ss_pred             CCCCccce--eEEEECCEEEEEeCcCCCe-------eeeeEEEEcCCCCeEEeCCCccc
Confidence            99988765  4578899999999997664       56789999999999999987763

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=1.8e-45  Score=339.88  Aligned_cols=275  Identities=16%  Similarity=0.232  Sum_probs=238.2

Q ss_pred             ccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCC----CchhHHHhhhcccccccCCC
Q 016413           32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKK----GQDAERFLSATFADLPAPDL  107 (390)
Q Consensus        32 ~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  107 (390)
                      .+.||++||. ..     ++++++|||.+++|..+++++.+   |..++++++++.    |.... ....+++.||+.++
T Consensus        11 ~~~l~~~GG~-~~-----~~~~~~~d~~~~~W~~~~~~p~~---r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~d~~~~   80 (306)
T 3ii7_A           11 HDYRIALFGG-SQ-----PQSCRYFNPKDYSWTDIRCPFEK---RRDAACVFWDNVVYILGGSQL-FPIKRMDCYNVVKD   80 (306)
T ss_dssp             CCEEEEEECC-SS-----TTSEEEEETTTTEEEECCCCSCC---CBSCEEEEETTEEEEECCBSS-SBCCEEEEEETTTT
T ss_pred             cceEEEEeCC-CC-----CceEEEecCCCCCEecCCCCCcc---cceeEEEEECCEEEEEeCCCC-CCcceEEEEeCCCC
Confidence            5899999998 21     68999999999999999998877   999999888766    22222 23348999999999


Q ss_pred             CeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEece
Q 016413          108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQ  187 (390)
Q Consensus       108 ~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~  187 (390)
                      +|+.++++|.+|..|++++++++|||+||.+.....++++++||+.+++|+.++++|.  +|..|++++.+++||++||.
T Consensus        81 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~  158 (306)
T 3ii7_A           81 SWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT--QRCSHGMVEANGLIYVCGGS  158 (306)
T ss_dssp             EEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS--CCBSCEEEEETTEEEEECCE
T ss_pred             eEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC--CcceeEEEEECCEEEEECCC
Confidence            9999999999999999999999999999997555567899999999999999999887  58899999999999999998


Q ss_pred             eCCCC-CCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEc
Q 016413          188 YGPQC-RGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE  266 (390)
Q Consensus       188 ~~~~~-~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~  266 (390)
                      +.... ....+++++||+++++|+.+++||.+|..|++++++++|||+||.........+++||       +.+++|+.+
T Consensus       159 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd-------~~~~~W~~~  231 (306)
T 3ii7_A          159 LGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYD-------IKLNEWKMV  231 (306)
T ss_dssp             ESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEE-------TTTTEEEEC
T ss_pred             CCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEee-------CCCCcEEEC
Confidence            76532 0127899999999999999999999999999999999999999987665556666666       789999999


Q ss_pred             cCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeE
Q 016413          267 IPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECA  342 (390)
Q Consensus       267 ~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~  342 (390)
                      +++|.+|..+++++++++|||+||.++.                 ..++++++|| .+++|+.++++|.+|..++++
T Consensus       232 ~~~p~~r~~~~~~~~~~~i~v~GG~~~~-----------------~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~  291 (306)
T 3ii7_A          232 SPMPWKGVTVKCAAVGSIVYVLAGFQGV-----------------GRLGHILEYNTETDKWVANSKVRAFPVTSCLI  291 (306)
T ss_dssp             CCCSCCBSCCEEEEETTEEEEEECBCSS-----------------SBCCEEEEEETTTTEEEEEEEEECCSCTTCEE
T ss_pred             CCCCCCccceeEEEECCEEEEEeCcCCC-----------------eeeeeEEEEcCCCCeEEeCCCcccccceeEEE
Confidence            9999999999999999999999998754                 2467899999 788999999999999887653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=4.9e-45  Score=336.28  Aligned_cols=254  Identities=19%  Similarity=0.296  Sum_probs=224.7

Q ss_pred             hcccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE
Q 016413           97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS  176 (390)
Q Consensus        97 ~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~  176 (390)
                      .++++||+.+++|+.++++|.+|..|++++++++|||+||.+... .++++++||+.+++|+.+++||.  +|..|++++
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~  106 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSL-RVRTVDSYDPVKDQWTSVANMRD--RRSTLGAAV  106 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSS-BCCCEEEEETTTTEEEEECCCSS--CCBSCEEEE
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCc-cccceEEECCCCCceeeCCCCCc--cccceEEEE
Confidence            379999999999999999999999999999999999999987654 46889999999999999999887  588999999


Q ss_pred             eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCC--CCCCcceEEeeee
Q 016413          177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR--HTPGLEHWSIAVK  254 (390)
Q Consensus       177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~~~~~  254 (390)
                      ++++||++||.++..   .++++++||+.+++|+.+++||.+|..|++++++++|||+||.....  ....+++||    
T Consensus       107 ~~~~iyv~GG~~~~~---~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd----  179 (302)
T 2xn4_A          107 LNGLLYAVGGFDGST---GLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYN----  179 (302)
T ss_dssp             ETTEEEEEEEECSSC---EEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEE----
T ss_pred             ECCEEEEEcCCCCCc---cCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEe----
Confidence            999999999987643   47899999999999999999999999999999999999999986542  355566666    


Q ss_pred             ccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCC
Q 016413          255 DGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMP  333 (390)
Q Consensus       255 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~  333 (390)
                         +.+++|+.++++|.+|..+++++++++|||+||.++.                 ..++++++|| .+++|+.++++|
T Consensus       180 ---~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-----------------~~~~~~~~yd~~~~~W~~~~~~~  239 (302)
T 2xn4_A          180 ---ATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGP-----------------LVRKSVEVYDPTTNAWRQVADMN  239 (302)
T ss_dssp             ---TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSS-----------------SBCCCEEEEETTTTEEEEECCCS
T ss_pred             ---CCCCcEEECCCCccccccccEEEECCEEEEECCCCCC-----------------cccceEEEEeCCCCCEeeCCCCC
Confidence               6899999999999999999999999999999998653                 2457899999 788999999999


Q ss_pred             CCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeecc-CCC
Q 016413          334 KPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHY-RPP  389 (390)
Q Consensus       334 ~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~-~~P  389 (390)
                      .+|..+  +++.++++|||+||.+...       .++++++||+++++|..++ .+|
T Consensus       240 ~~r~~~--~~~~~~~~i~v~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~~~  287 (302)
T 2xn4_A          240 MCRRNA--GVCAVNGLLYVVGGDDGSC-------NLASVEYYNPTTDKWTVVSSCMS  287 (302)
T ss_dssp             SCCBSC--EEEEETTEEEEECCBCSSS-------BCCCEEEEETTTTEEEECSSCCS
T ss_pred             CccccC--eEEEECCEEEEECCcCCCc-------ccccEEEEcCCCCeEEECCcccC
Confidence            988755  4578899999999987654       4678999999999999997 666

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=8e-45  Score=336.99  Aligned_cols=246  Identities=15%  Similarity=0.253  Sum_probs=206.3

Q ss_pred             CCcCCCceEEEECCEEEEEecCC-----CCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCC
Q 016413          116 PVPRLDGAAIQIKNLFYVFAGYG-----SLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGP  190 (390)
Q Consensus       116 ~~~R~~~~~~~~~~~lyv~GG~~-----~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~  190 (390)
                      |.+|..|++++++++|||+||..     ......+++++||+.+++|+.++++|.  +|..|++++++++|||+||.+..
T Consensus        33 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~  110 (315)
T 4asc_A           33 QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPS--PRCLFGLGEALNSIYVVGGREIK  110 (315)
T ss_dssp             CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSS--CEESCEEEEETTEEEEECCEESS
T ss_pred             CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCc--chhceeEEEECCEEEEEeCCcCC
Confidence            45789999999999999999962     222345679999999999999999887  68999999999999999998742


Q ss_pred             CCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccC-CCCCCCCCcceEEeeeeccccccCCeEEccCC
Q 016413          191 QCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGS-KENRHTPGLEHWSIAVKDGKALEKAWRTEIPI  269 (390)
Q Consensus       191 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~  269 (390)
                      ......+++++||+.+++|+.++++|.+|..|++++++++|||+||. ......+++++||       +.+++|+.++++
T Consensus       111 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd-------~~~~~W~~~~~~  183 (315)
T 4asc_A          111 DGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYD-------PKKFEWKELAPM  183 (315)
T ss_dssp             TTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEE-------TTTTEEEECCCC
T ss_pred             CCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEe-------CCCCeEEECCCC
Confidence            22256899999999999999999999999999999999999999998 4445566777776       689999999999


Q ss_pred             CCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECC
Q 016413          270 PRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNN  348 (390)
Q Consensus       270 p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~  348 (390)
                      |.+|..+++++++++|||+||.+..                 ..++++++|| .+++|+.++++|.+|..+  +++.+++
T Consensus       184 p~~r~~~~~~~~~~~iyv~GG~~~~-----------------~~~~~~~~yd~~~~~W~~~~~~p~~r~~~--~~~~~~~  244 (315)
T 4asc_A          184 QTARSLFGATVHDGRIIVAAGVTDT-----------------GLTSSAEVYSITDNKWAPFEAFPQERSSL--SLVSLVG  244 (315)
T ss_dssp             SSCCBSCEEEEETTEEEEEEEECSS-----------------SEEEEEEEEETTTTEEEEECCCSSCCBSC--EEEEETT
T ss_pred             CCchhceEEEEECCEEEEEeccCCC-----------------CccceEEEEECCCCeEEECCCCCCcccce--eEEEECC
Confidence            9999999999999999999998654                 2467899999 788999999999998865  4578899


Q ss_pred             EEEEEcCCCCCCC--cceeeEEeeeEEEeecCccceeeccCCC
Q 016413          349 SIIITGGTTEKHP--MTKRMILVGEVFQFHLDSLVIIYHYRPP  389 (390)
Q Consensus       349 ~l~v~GG~~~~~~--~~~~~~~~~~v~~yd~~~~~W~~v~~~P  389 (390)
                      +|||+||.+....  .......++++++||+++++|+.+...|
T Consensus       245 ~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~  287 (315)
T 4asc_A          245 TLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREI  287 (315)
T ss_dssp             EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEESCS
T ss_pred             EEEEECCccccCcCCccccccccCcEEEecCCCChhhhhccCC
Confidence            9999999864210  0111236789999999999999985554

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=4e-44  Score=332.76  Aligned_cols=289  Identities=17%  Similarity=0.329  Sum_probs=232.0

Q ss_pred             hccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCC----Cc---hh--H-HHhhhccc
Q 016413           31 IADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKK----GQ---DA--E-RFLSATFA  100 (390)
Q Consensus        31 ~~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~----~~---~~--~-~~~~~~~~  100 (390)
                      ..+.||++||.          .+++|||.+++|... +++. |..|..+++++.++.    |.   ..  . ..+..+++
T Consensus        14 ~~~~i~~~GG~----------~~~~yd~~~~~W~~~-~~~~-~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~   81 (318)
T 2woz_A           14 VKDLILLVNDT----------AAVAYDPMENECYLT-ALAE-QIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFF   81 (318)
T ss_dssp             EEEEEEEECSS----------EEEEEETTTTEEEEE-EECT-TSCSSEEEEECSSSCEEEEESSCC-------CCCBEEE
T ss_pred             ecchhhhcccc----------ceEEECCCCCceecc-cCCc-cCCccceEEEEECCEEEEECCcccCccccCCCccccEE
Confidence            46899999996          478999999999984 3332 234877877766555    11   11  1 12333589


Q ss_pred             ccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCC-CCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCC
Q 016413          101 DLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGS-LDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGR  179 (390)
Q Consensus       101 ~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~  179 (390)
                      .||+.+++|+.++++|.+|..|++++++++|||+||.+. ....++++++||+.+++|+.++++|.  +|..|++++.++
T Consensus        82 ~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~  159 (318)
T 2woz_A           82 QLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI--KVYGHNVISHNG  159 (318)
T ss_dssp             EEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS--CEESCEEEEETT
T ss_pred             EEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC--cccccEEEEECC
Confidence            999999999999999999999999999999999999863 34457899999999999999998887  588999999999


Q ss_pred             EEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccc
Q 016413          180 YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKAL  259 (390)
Q Consensus       180 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~  259 (390)
                      +||++||.+...  ...+++++||+.+++|+.++++|.+|..|++++++++|||+||.......+.+++||       +.
T Consensus       160 ~iyv~GG~~~~~--~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd-------~~  230 (318)
T 2woz_A          160 MIYCLGGKTDDK--KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFD-------LK  230 (318)
T ss_dssp             EEEEECCEESSS--CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEE-------TT
T ss_pred             EEEEEcCCCCCC--CccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEE-------CC
Confidence            999999986543  347899999999999999999999999999999999999999987554334444444       78


Q ss_pred             cCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCc
Q 016413          260 EKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSH  338 (390)
Q Consensus       260 ~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~  338 (390)
                      +++|+.++++|.+|..+++++++++|||+||.+.....+        ........+++++|| .+++|+.+  +|.+|..
T Consensus       231 ~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~--------~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~  300 (318)
T 2woz_A          231 TNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLES--------KEFAPTEVNDIWKYEDDKKEWAGM--LKEIRYA  300 (318)
T ss_dssp             TCCEEECCCCSSCCBSCEEEEETTEEEEECCBCCBC------------CCBCCBCCCEEEEETTTTEEEEE--ESCCGGG
T ss_pred             CCeEEECCCCCCcccceEEEEECCEEEEECCeeccCCCC--------ceeccceeeeEEEEeCCCCEehhh--ccccccc
Confidence            999999999999999999999999999999986531000        000113467899999 78899998  7777776


Q ss_pred             ceeEEEEECCEEEEEc
Q 016413          339 IECAWVIVNNSIIITG  354 (390)
Q Consensus       339 ~~~~~~~~~~~l~v~G  354 (390)
                      ++  ++.++++|||+.
T Consensus       301 ~~--~~~~~~~iyi~~  314 (318)
T 2woz_A          301 SG--ASCLATRLNLFK  314 (318)
T ss_dssp             TT--CEEEEEEEEGGG
T ss_pred             cc--ceeeCCEEEEEE
Confidence            54  478899999874

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=1.3e-43  Score=334.37  Aligned_cols=306  Identities=17%  Similarity=0.170  Sum_probs=225.4

Q ss_pred             eecCCCCCccccccceEEEecCCCchhHHHhhhcccccccC--CCCeEECCCCC-CcCCCceEEEECCEEEEEecC-C--
Q 016413           65 VIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAP--DLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGY-G--  138 (390)
Q Consensus        65 ~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~W~~~~~~~-~~R~~~~~~~~~~~lyv~GG~-~--  138 (390)
                      .+++|+.+   |..++++++++.-...+.....+++.||+.  +++|+.++++| .+|..|++++++++|||+||. +  
T Consensus         2 ~l~~lP~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~   78 (357)
T 2uvk_A            2 VLPETPVP---FKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNS   78 (357)
T ss_dssp             CSCCCSSC---CCSCEEEEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECT
T ss_pred             CCCCCCcc---ccceEEEEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCC
Confidence            45667666   888887777665222222223489999997  48999999999 899999999999999999998 3  


Q ss_pred             -CCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCC--------------------------
Q 016413          139 -SLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQ--------------------------  191 (390)
Q Consensus       139 -~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~--------------------------  191 (390)
                       .....++++++||+.+++|+.+++|+ |.+|..|++++.+++|||+||.+...                          
T Consensus        79 ~~~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (357)
T 2uvk_A           79 EGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYF  157 (357)
T ss_dssp             TSCEEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CccceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhc
Confidence             22345789999999999999999998 55799999999999999999976431                          


Q ss_pred             -----CCCCCceEEEEECCCCCeEeCCCCCCCCCC-ceEEEECCEEEEEccCCCCC-CCCCcceEEeeeeccccccCCeE
Q 016413          192 -----CRGPTSRTFVLDSETRKWDSIPPLPSPRYS-PATQLWRGRLHVMGGSKENR-HTPGLEHWSIAVKDGKALEKAWR  264 (390)
Q Consensus       192 -----~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~~~~~~~~~~~~~W~  264 (390)
                           ....++++++||+.+++|+.++++|.+|.. |++++++++|||+||..... ....+.+     |++|+.+++|+
T Consensus       158 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~-----~d~d~~~~~W~  232 (357)
T 2uvk_A          158 DKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFE-----LDFTGNNLKWN  232 (357)
T ss_dssp             SSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEE-----EECC---CEEE
T ss_pred             cccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEE-----EEecCCCCcEE
Confidence                 001368999999999999999999987655 99999999999999975432 2333333     44457999999


Q ss_pred             EccCCC--CCCCceeEEEECCEEEEEcCCCCCCCCC--CCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcc
Q 016413          265 TEIPIP--RGGPHRACFVFNDRLFVVGGQEGDFMAK--PGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHI  339 (390)
Q Consensus       265 ~~~~~p--~~~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~  339 (390)
                      .++++|  +.+..+++++++++|||+||.+......  ..+..+.  ......+.++++|| .+++|+.++++|.+|..+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~  310 (357)
T 2uvk_A          233 KLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYA--HEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYG  310 (357)
T ss_dssp             ECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSST--TTTCCCEECCEEEECC---CEEEEECSSCCBSS
T ss_pred             ecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceec--cccccceeeEEEEecCCCceeeCCCCCCCcccc
Confidence            998775  4456677999999999999965321000  0000000  00011245799999 788999999999998865


Q ss_pred             eeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeeccCCC
Q 016413          340 ECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYRPP  389 (390)
Q Consensus       340 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~P  389 (390)
                        +++.++++|||+||.+....      .++++++|+.++++|.+....|
T Consensus       311 --~~~~~~~~i~v~GG~~~~~~------~~~~v~~l~~~~~~~~~~~~~~  352 (357)
T 2uvk_A          311 --VSLPWNNSLLIIGGETAGGK------AVTDSVLITVKDNKVTVQNLEH  352 (357)
T ss_dssp             --EEEEETTEEEEEEEECGGGC------EEEEEEEEEC-CCSCEEEC---
T ss_pred             --eeEEeCCEEEEEeeeCCCCC------EeeeEEEEEEcCcEeEeeeccc
Confidence              45789999999999987654      6789999999999999987766

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=3.5e-43  Score=324.90  Aligned_cols=252  Identities=17%  Similarity=0.263  Sum_probs=219.9

Q ss_pred             ccCCCceEeecCCCCCccccccceEEEecCC----Cch----hHHHhhhcccccccCCCCeEECCCCCCcCCCceEEEEC
Q 016413           57 ALEKSGVVVIPHVNATKIDRQRESVAVIDKK----GQD----AERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIK  128 (390)
Q Consensus        57 d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~  128 (390)
                      |+.+++|..++.++.+   |..++++++++.    |..    .......+++.||+.+++|+.++++|.+|..|++++++
T Consensus        45 d~~~~~W~~~~~~p~~---r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~  121 (308)
T 1zgk_A           45 NPSNGTWLRLADLQVP---RSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVID  121 (308)
T ss_dssp             ETTTTEEEECCCCSSC---CBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEET
T ss_pred             cCCCCeEeECCCCCcc---cccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEEC
Confidence            6789999999988877   999988887665    221    11123348999999999999999999999999999999


Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK  208 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  208 (390)
                      ++|||+||.+... .++++++||+.+++|+.++++|.  +|..+++++++++||++||.++...   .+++++||+.+++
T Consensus       122 ~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~---~~~~~~yd~~~~~  195 (308)
T 1zgk_A          122 GHIYAVGGSHGCI-HHNSVERYEPERDEWHLVAPMLT--RRIGVGVAVLNRLLYAVGGFDGTNR---LNSAECYYPERNE  195 (308)
T ss_dssp             TEEEEECCEETTE-ECCCEEEEETTTTEEEECCCCSS--CCBSCEEEEETTEEEEECCBCSSCB---CCCEEEEETTTTE
T ss_pred             CEEEEEcCCCCCc-ccccEEEECCCCCeEeECCCCCc--cccceEEEEECCEEEEEeCCCCCCc---CceEEEEeCCCCe
Confidence            9999999987643 46889999999999999998887  5889999999999999999876543   7899999999999


Q ss_pred             eEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEE
Q 016413          209 WDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVV  288 (390)
Q Consensus       209 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~  288 (390)
                      |+.+++||.+|..|++++++++|||+||........++++||       +.+++|+.++++|.+|..+++++++++|||+
T Consensus       196 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd-------~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~  268 (308)
T 1zgk_A          196 WRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYD-------VETETWTFVAPMKHRRSALGITVHQGRIYVL  268 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE-------TTTTEEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred             EeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEe-------CCCCcEEECCCCCCCccceEEEEECCEEEEE
Confidence            999999999999999999999999999998766666777777       6899999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCccee
Q 016413          289 GGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIEC  341 (390)
Q Consensus       289 GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~  341 (390)
                      ||.++.                 ..++++++|| .+++|+.+++||.+|..+++
T Consensus       269 GG~~~~-----------------~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~  305 (308)
T 1zgk_A          269 GGYDGH-----------------TFLDSVECYDPDTDTWSEVTRMTSGRSGVGV  305 (308)
T ss_dssp             CCBCSS-----------------CBCCEEEEEETTTTEEEEEEECSSCCBSCEE
T ss_pred             cCcCCC-----------------cccceEEEEcCCCCEEeecCCCCCCccccee
Confidence            998653                 2567899999 78899999999999987755

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=2.1e-42  Score=321.07  Aligned_cols=259  Identities=18%  Similarity=0.278  Sum_probs=214.8

Q ss_pred             cccccccCCCCeEECCC-CCCcCCCceEEEECCEEEEEecCCCC-----CCCCCeEEEEeCCCCceeecCCCCCCCCCcc
Q 016413           98 TFADLPAPDLEWEQMPS-APVPRLDGAAIQIKNLFYVFAGYGSL-----DYVHSHVDVYNFTDNKWVDRFDMPKDMAHSH  171 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~-~~~~R~~~~~~~~~~~lyv~GG~~~~-----~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~  171 (390)
                      .++.||+.+++|...+. .+.+|..|++++++++|||+||....     ....+++++||+.+++|+.+++||.  +|..
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~  102 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPS--ARCL  102 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSS--CBCS
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCc--cccc
Confidence            47899999999988432 34789999999999999999996321     1234569999999999999999887  5889


Q ss_pred             eEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCC-CCCCCCcceEE
Q 016413          172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKE-NRHTPGLEHWS  250 (390)
Q Consensus       172 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~  250 (390)
                      |++++++++|||+||.+.... ...+++++||+.+++|+.++++|.+|..|++++++++|||+||... ....+++++||
T Consensus       103 ~~~~~~~~~iyv~GG~~~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd  181 (318)
T 2woz_A          103 FGLGEVDDKIYVVAGKDLQTE-ASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYN  181 (318)
T ss_dssp             CEEEEETTEEEEEEEEBTTTC-CEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEE
T ss_pred             cceEEECCEEEEEcCccCCCC-cccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEc
Confidence            999999999999999874222 4579999999999999999999999999999999999999999743 33456667776


Q ss_pred             eeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEEC
Q 016413          251 IAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVL  329 (390)
Q Consensus       251 ~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~  329 (390)
                             +.+++|+.++++|.+|..+++++++++|||+||.+..                 ..++++++|| .+++|+.+
T Consensus       182 -------~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-----------------~~~~~~~~yd~~~~~W~~~  237 (318)
T 2woz_A          182 -------PKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTED-----------------GLSASVEAFDLKTNKWEVM  237 (318)
T ss_dssp             -------TTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETT-----------------EEEEEEEEEETTTCCEEEC
T ss_pred             -------CCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCC-----------------CccceEEEEECCCCeEEEC
Confidence                   6899999999999999999999999999999998653                 3567899999 78899999


Q ss_pred             CCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcc--eeeEEeeeEEEeecCccceeec
Q 016413          330 PPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMT--KRMILVGEVFQFHLDSLVIIYH  385 (390)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~--~~~~~~~~v~~yd~~~~~W~~v  385 (390)
                      +++|.+|..+  +++.++++|||+||.+......  ......+++++||+++++|+.+
T Consensus       238 ~~~p~~r~~~--~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          238 TEFPQERSSI--SLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             CCCSSCCBSC--EEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             CCCCCcccce--EEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            9999988765  5588999999999987532100  0011467999999999999988

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=1.8e-41  Score=314.44  Aligned_cols=236  Identities=19%  Similarity=0.279  Sum_probs=196.3

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCC--CCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEE
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGS--LDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV  175 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~--~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~  175 (390)
                      +++.||+.+++|+.++++|.+|..|++++++++|||+||.+.  ....++++++||+.+++|+.++++|.  +|..|+++
T Consensus        68 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~  145 (315)
T 4asc_A           68 YFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY--VVYGHTVL  145 (315)
T ss_dssp             EEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS--CCBSCEEE
T ss_pred             ceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC--cccceeEE
Confidence            577888888888888889999999999999999999999752  34467899999999999999999887  58999999


Q ss_pred             EeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeec
Q 016413          176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKD  255 (390)
Q Consensus       176 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~  255 (390)
                      +.+++|||+||.+...  ...+++++||+.+++|+.+++||.+|..|++++++++|||+||.......+.+++||     
T Consensus       146 ~~~~~iyv~GG~~~~~--~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd-----  218 (315)
T 4asc_A          146 SHMDLVYVIGGKGSDR--KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYS-----  218 (315)
T ss_dssp             EETTEEEEECCBCTTS--CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEE-----
T ss_pred             EECCEEEEEeCCCCCC--cccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEE-----
Confidence            9999999999985433  458999999999999999999999999999999999999999987654444455555     


Q ss_pred             cccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCC
Q 016413          256 GKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPK  334 (390)
Q Consensus       256 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~  334 (390)
                        +.+++|+.++++|.+|..+++++++++|||+||.+.....+        .......++++++|| .+++|+.+  ++.
T Consensus       219 --~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~--------~~~~~~~~~~v~~yd~~~~~W~~~--~~~  286 (315)
T 4asc_A          219 --ITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETES--------GELVPTELNDIWRYNEEEKKWEGV--LRE  286 (315)
T ss_dssp             --TTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTT--------SCEEEEEEEEEEEEETTTTEEEEE--ESC
T ss_pred             --CCCCeEEECCCCCCcccceeEEEECCEEEEECCccccCcCC--------ccccccccCcEEEecCCCChhhhh--ccC
Confidence              78999999999999999999999999999999975321000        001113577899999 78899999  666


Q ss_pred             CCCcceeEEEEECCEEEEEcCC
Q 016413          335 PNSHIECAWVIVNNSIIITGGT  356 (390)
Q Consensus       335 ~~~~~~~~~~~~~~~l~v~GG~  356 (390)
                      ||..++  +++++++||++...
T Consensus       287 ~r~~~~--~~~~~~~l~v~~~~  306 (315)
T 4asc_A          287 IAYAAG--ATFLPVRLNVLRLT  306 (315)
T ss_dssp             SSCCSS--CEEEEEEECGGGSE
T ss_pred             CcCccc--eEEeCCEEEEEEeh
Confidence            676554  57899999998664

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=8.7e-41  Score=315.12  Aligned_cols=275  Identities=15%  Similarity=0.198  Sum_probs=215.1

Q ss_pred             HHHHHHhhccEEEEecCCCCCCCccccceeeeeccC--CCceEeecCCC-CCccccccceEEEecCC----Cch-h----
Q 016413           24 GLLGAALIADFMWASSSSSFSSSSAHLSVASNWALE--KSGVVVIPHVN-ATKIDRQRESVAVIDKK----GQD-A----   91 (390)
Q Consensus        24 ~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~~d~~--~~~W~~l~~~~-~~p~~r~~~~~~~~~~~----~~~-~----   91 (390)
                      ..|++++++++||++||. .+      +++++||+.  +++|..+++|+ .+   |..++++++++.    |.. .    
T Consensus        11 ~~~~~~~~~~~iyv~GG~-~~------~~~~~~d~~~~~~~W~~~~~~p~~~---R~~~~~~~~~~~lyv~GG~~~~~~~   80 (357)
T 2uvk_A           11 KSGTGAIDNDTVYIGLGS-AG------TAWYKLDTQAKDKKWTALAAFPGGP---RDQATSAFIDGNLYVFGGIGKNSEG   80 (357)
T ss_dssp             CSCEEEEETTEEEEECGG-GT------TCEEEEETTSSSCCEEECCCCTTCC---CBSCEEEEETTEEEEECCEEECTTS
T ss_pred             cceEEEEECCEEEEEeCc-CC------CeEEEEccccCCCCeeECCCCCCCc---CccceEEEECCEEEEEcCCCCCCCc
Confidence            346677889999999998 32      379999997  58999999988 67   999999888766    221 1    


Q ss_pred             HHHhhhcccccccCCCCeEECCCCC-CcCCCceEEEECCEEEEEecCCCCC-----------------------------
Q 016413           92 ERFLSATFADLPAPDLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYGSLD-----------------------------  141 (390)
Q Consensus        92 ~~~~~~~~~~~~~~~~~W~~~~~~~-~~R~~~~~~~~~~~lyv~GG~~~~~-----------------------------  141 (390)
                      ......+++.||+.+++|+++++++ .+|..|++++++++|||+||.+...                             
T Consensus        81 ~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (357)
T 2uvk_A           81 LTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKK  160 (357)
T ss_dssp             CEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSC
T ss_pred             cceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccc
Confidence            1122348999999999999999988 9999999999999999999986432                             


Q ss_pred             ----CCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEEC--CCCCeEeCCCC
Q 016413          142 ----YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDS--ETRKWDSIPPL  215 (390)
Q Consensus       142 ----~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~  215 (390)
                          ..++++++||+.+++|+.++++|.+ +|..+++++.+++|||+||.+...  ...+++++||+  ++++|+.+++|
T Consensus       161 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~~~~~~~~~~~~~iyv~GG~~~~~--~~~~~v~~~d~d~~~~~W~~~~~~  237 (357)
T 2uvk_A          161 AEDYFFNKFLLSFDPSTQQWSYAGESPWY-GTAGAAVVNKGDKTWLINGEAKPG--LRTDAVFELDFTGNNLKWNKLAPV  237 (357)
T ss_dssp             GGGGCCCCEEEEEETTTTEEEEEEECSSC-CCBSCEEEEETTEEEEECCEEETT--EECCCEEEEECC---CEEEECCCS
T ss_pred             ccccCCcccEEEEeCCCCcEEECCCCCCC-CcccccEEEECCEEEEEeeecCCC--cccCceEEEEecCCCCcEEecCCC
Confidence                2468999999999999999988874 356689999999999999987653  23678999986  99999999988


Q ss_pred             CCC--CCCceEEEECCEEEEEccCCCCC-----------------CCCCcceEEeeeeccccccCCeEEccCCCCCCCce
Q 016413          216 PSP--RYSPATQLWRGRLHVMGGSKENR-----------------HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHR  276 (390)
Q Consensus       216 p~~--r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~  276 (390)
                      |.+  |..|++++++++|||+||.....                 ....+++||       +.+++|+.++++|.+|..+
T Consensus       238 ~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd-------~~~~~W~~~~~~p~~r~~~  310 (357)
T 2uvk_A          238 SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHL-------WHNGKWDKSGELSQGRAYG  310 (357)
T ss_dssp             STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEE-------CC---CEEEEECSSCCBSS
T ss_pred             CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEe-------cCCCceeeCCCCCCCcccc
Confidence            766  45778999999999999964321                 112334444       7899999999999999999


Q ss_pred             eEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCC
Q 016413          277 ACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPK  334 (390)
Q Consensus       277 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~  334 (390)
                      ++++++++|||+||.+...                ..++++++|+ .+++|....++|.
T Consensus       311 ~~~~~~~~i~v~GG~~~~~----------------~~~~~v~~l~~~~~~~~~~~~~~~  353 (357)
T 2uvk_A          311 VSLPWNNSLLIIGGETAGG----------------KAVTDSVLITVKDNKVTVQNLEHH  353 (357)
T ss_dssp             EEEEETTEEEEEEEECGGG----------------CEEEEEEEEEC-CCSCEEEC----
T ss_pred             eeEEeCCEEEEEeeeCCCC----------------CEeeeEEEEEEcCcEeEeeecccc
Confidence            9999999999999987542                3468899999 8999999877664

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=5.6e-40  Score=302.22  Aligned_cols=276  Identities=17%  Similarity=0.306  Sum_probs=239.5

Q ss_pred             hhccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCC-----CchhHHHhhhccccccc
Q 016413           30 LIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKK-----GQDAERFLSATFADLPA  104 (390)
Q Consensus        30 ~~~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  104 (390)
                      .+++.||++||..+.  ...++++++||+.+++|..++.++.+   |..+++++.++.     |.... ....+++.||+
T Consensus        12 ~~~~~i~~~GG~~~~--~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~d~   85 (301)
T 2vpj_A           12 GANEVLLVVGGFGSQ--QSPIDVVEKYDPKTQEWSFLPSITRK---RRYVASVSLHDRIYVIGGYDGR-SRLSSVECLDY   85 (301)
T ss_dssp             -CCEEEEEECCEETT--TEECCCEEEEETTTTEEEECCCCSSC---CBSCEEEEETTEEEEECCBCSS-CBCCCEEEEET
T ss_pred             cCCCEEEEEeCccCC--CcceeEEEEEcCCCCeEEeCCCCChh---hccccEEEECCEEEEEcCCCCC-ccCceEEEEEC
Confidence            378999999994244  56789999999999999999988777   999988887665     22222 23348999999


Q ss_pred             CCCC---eEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEE
Q 016413          105 PDLE---WEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYI  181 (390)
Q Consensus       105 ~~~~---W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~i  181 (390)
                      .+++   |+.++++|.+|..|++++++++|||+||.+... .++++++||+.+++|+.++++|.  +|..|++++.+++|
T Consensus        86 ~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~i  162 (301)
T 2vpj_A           86 TADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLGDMQT--AREGAGLVVASGVI  162 (301)
T ss_dssp             TCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEEECSS--CCBSCEEEEETTEE
T ss_pred             CCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECCCCCC--CcccceEEEECCEE
Confidence            9999   999999999999999999999999999998654 47899999999999999998887  58899999999999


Q ss_pred             EEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccC
Q 016413          182 YIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEK  261 (390)
Q Consensus       182 yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~  261 (390)
                      |++||.++..   ..+++++||+.+++|+.++++|.+|..|++++++++|||+||.......+.+++||       +.++
T Consensus       163 yv~GG~~~~~---~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd-------~~~~  232 (301)
T 2vpj_A          163 YCLGGYDGLN---ILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYN-------IRTD  232 (301)
T ss_dssp             EEECCBCSSC---BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE-------TTTT
T ss_pred             EEECCCCCCc---ccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEe-------CCCC
Confidence            9999987653   47899999999999999999999999999999999999999998766566677776       6899


Q ss_pred             CeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcce
Q 016413          262 AWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIE  340 (390)
Q Consensus       262 ~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~  340 (390)
                      +|+.++++|.+|..+++++++++|||+||.++.                 ..++++++|| .+++|+.+++||.+|..++
T Consensus       233 ~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~-----------------~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~  295 (301)
T 2vpj_A          233 SWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGN-----------------SLLSSIECYDPIIDSWEVVTSMGTQRCDAG  295 (301)
T ss_dssp             EEEEECCCSSCCBSCEEEEETTEEEEECCBCSS-----------------SBEEEEEEEETTTTEEEEEEEEEEEEESCE
T ss_pred             cEEECCCCCCcccceeEEEECCEEEEEcCcCCC-----------------cccccEEEEcCCCCeEEEcCCCCcccccce
Confidence            999999999999999999999999999998654                 2456899999 7889999999999988765


Q ss_pred             e
Q 016413          341 C  341 (390)
Q Consensus       341 ~  341 (390)
                      +
T Consensus       296 ~  296 (301)
T 2vpj_A          296 V  296 (301)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=4.6e-37  Score=312.94  Aligned_cols=275  Identities=11%  Similarity=0.086  Sum_probs=214.4

Q ss_pred             HHHhhccEEEEecCCCCCCCccccceeeeeccCCCceEeec-CCCCCccccccceEEEecCCCchhHHHhhhcccccccC
Q 016413           27 GAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIP-HVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAP  105 (390)
Q Consensus        27 ~~~~~~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~-~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (390)
                      +++++++.||++||. .  . ..++++++||+.+++|..++ +++.                                  
T Consensus       392 ~~~~~~~~iyv~GG~-~--~-~~~~~v~~yd~~~~~W~~~~~~~p~----------------------------------  433 (695)
T 2zwa_A          392 DVDVAGNDVFYMGGS-N--P-YRVNEILQLSIHYDKIDMKNIEVSS----------------------------------  433 (695)
T ss_dssp             EEEECSSCEEEECCB-S--S-SBCCCEEEEEECSSCEEEEECCCCC----------------------------------
T ss_pred             EEEEECCEEEEECCC-C--C-CCcCcEEEEECCCCeEEEeccCCCC----------------------------------
Confidence            445589999999998 2  2 56778888888888888877 5321                                  


Q ss_pred             CCCeEECCCCCCcCCCceEEEE--CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-CCEEE
Q 016413          106 DLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIY  182 (390)
Q Consensus       106 ~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~~~iy  182 (390)
                             ..+|.+|..|+++++  +++|||+||.+.....++++|+||+.+++|+.+++||.  +|..|+++++ +++||
T Consensus       434 -------~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~--~R~~h~~~~~~~~~iy  504 (695)
T 2zwa_A          434 -------SEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH--TRFRHSACSLPDGNVL  504 (695)
T ss_dssp             -------SCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB--CCBSCEEEECTTSCEE
T ss_pred             -------CCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC--CcccceEEEEcCCEEE
Confidence                   247889999999999  99999999998766567899999999999999999987  6889999996 99999


Q ss_pred             EEeceeCCCCCCCCceEEEEECCCCCeEeCCC---CCCCCCCceEEEEC---CEEEEEccCCCC--CCCCCcceEEeeee
Q 016413          183 IVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLWR---GRLHVMGGSKEN--RHTPGLEHWSIAVK  254 (390)
Q Consensus       183 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~---~~iyv~GG~~~~--~~~~~~~~~~~~~~  254 (390)
                      |+||.+...      ++++||+.+++|+.+++   +|.+|..|++++++   ++|||+||....  ...+.+++|+    
T Consensus       505 v~GG~~~~~------~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd----  574 (695)
T 2zwa_A          505 ILGGVTEGP------AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFK----  574 (695)
T ss_dssp             EECCBCSSC------SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEE----
T ss_pred             EECCCCCCC------CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEE----
Confidence            999986542      89999999999999986   89999999988877   899999998543  3455666666    


Q ss_pred             ccccccCC------eEEccCC-CCCCCceeEEEEC-CEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCC
Q 016413          255 DGKALEKA------WRTEIPI-PRGGPHRACFVFN-DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK  325 (390)
Q Consensus       255 ~~~~~~~~------W~~~~~~-p~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~  325 (390)
                         +.+++      |+.+.++ +.+|..+++++++ ++|||+||.+....              ....+++++|| .+++
T Consensus       575 ---~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~--------------~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          575 ---YDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGL--------------FDRTNSIISLDPLSET  637 (695)
T ss_dssp             ---ECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCC--------------CCTTTSEEEEETTTTE
T ss_pred             ---ccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCC--------------CCCCCeEEEEECCCCe
Confidence               57888      8988775 4788888999999 99999999864321              02467899999 7889


Q ss_pred             eEECCCCCC-------CCCcceeEEEEECC-EEEEEcCCCCCCCcceeeEEeeeEEEeecCcc
Q 016413          326 WKVLPPMPK-------PNSHIECAWVIVNN-SIIITGGTTEKHPMTKRMILVGEVFQFHLDSL  380 (390)
Q Consensus       326 W~~~~~~~~-------~~~~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~  380 (390)
                      |+.++ +|.       | .+++++++.+++ +|||+||...--..   +..++++|.+|+..+
T Consensus       638 W~~~~-~p~~~~~~~~p-~~~gh~~~~~~~g~i~v~GGg~~cfsf---Gt~~n~i~~ldl~~~  695 (695)
T 2zwa_A          638 LTSIP-ISRRIWEDHSL-MLAGFSLVSTSMGTIHIIGGGATCYGF---GSVTNVGLKLIAIAK  695 (695)
T ss_dssp             EEECC-CCHHHHHHSCC-CCSSCEEECC---CEEEECCEEECTTS---CEEECCCEEEEECCC
T ss_pred             EEEee-ccccccCCCCc-cceeeeEEEeCCCEEEEEeCCccCcCc---cccccceEEEEEEcC
Confidence            99653 321       2 233445566555 99999995322110   126779999998653

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=5e-35  Score=297.97  Aligned_cols=242  Identities=14%  Similarity=0.187  Sum_probs=195.0

Q ss_pred             CeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecC-CCC---CCCCCcceEEEEe--CCEE
Q 016413          108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRF-DMP---KDMAHSHLGVVSD--GRYI  181 (390)
Q Consensus       108 ~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~l~---~~~~r~~~~~~~~--~~~i  181 (390)
                      +|...+..|.+|.++ +++++++|||+||.+.  ..++++++||+.+++|+.++ ++|   .|.+|.+|+++++  +++|
T Consensus       378 ~~~~~~~~p~rr~g~-~~~~~~~iyv~GG~~~--~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~l  454 (695)
T 2zwa_A          378 QLLECECPINRKFGD-VDVAGNDVFYMGGSNP--YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQL  454 (695)
T ss_dssp             EEEECCCTTCCBSCE-EEECSSCEEEECCBSS--SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEE
T ss_pred             eEeccCCCCCCceeE-EEEECCEEEEECCCCC--CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEE
Confidence            355555556555554 4558999999999876  45788999999999999998 643   3447999999999  9999


Q ss_pred             EEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEE-CCEEEEEccCCCCCCCCCcceEEeeeecccccc
Q 016413          182 YIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALE  260 (390)
Q Consensus       182 yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  260 (390)
                      ||+||.+...  ..++++++||+.+++|+.+++||.+|..|+++++ +++|||+||.....   .+++||       +.+
T Consensus       455 yv~GG~~~~~--~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~---~v~~yd-------~~t  522 (695)
T 2zwa_A          455 LLIGGRKAPH--QGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP---AMLLYN-------VTE  522 (695)
T ss_dssp             EEECCBSSTT--CBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC---SEEEEE-------TTT
T ss_pred             EEEcCCCCCC--CccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC---CEEEEE-------CCC
Confidence            9999987654  2478999999999999999999999999999997 99999999987544   555555       799


Q ss_pred             CCeEEccC---CCCCCCceeEEEEC---CEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCC------eE
Q 016413          261 KAWRTEIP---IPRGGPHRACFVFN---DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK------WK  327 (390)
Q Consensus       261 ~~W~~~~~---~p~~~~~~~~~~~~---~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~------W~  327 (390)
                      ++|+.+++   +|.+|..+++++++   ++|||+||.....               ...++++++|| .+++      |+
T Consensus       523 ~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~---------------~~~~~~v~~yd~~~~~w~~~~~W~  587 (695)
T 2zwa_A          523 EIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQ---------------TTVSDKAIIFKYDAENATEPITVI  587 (695)
T ss_dssp             TEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTS---------------SCBCCEEEEEEECTTCSSCCEEEE
T ss_pred             CceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCC---------------CeeeCcEEEEEccCCccccceEEE
Confidence            99999986   88899988888877   8999999985431               13567899999 7788      89


Q ss_pred             ECCCC-CCCCCcceeEEEEEC-CEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeec
Q 016413          328 VLPPM-PKPNSHIECAWVIVN-NSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYH  385 (390)
Q Consensus       328 ~~~~~-~~~~~~~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v  385 (390)
                      .++++ +.+|..+  ++++++ ++|||+||.+.....    ...+++++||+++++|..+
T Consensus       588 ~~~~~p~~~R~~~--~~~~~~~~~iyv~GG~~~~~~~----~~~~~v~~yd~~t~~W~~~  641 (695)
T 2zwa_A          588 KKLQHPLFQRYGS--QIKYITPRKLLIVGGTSPSGLF----DRTNSIISLDPLSETLTSI  641 (695)
T ss_dssp             EEEECGGGCCBSC--EEEEEETTEEEEECCBCSSCCC----CTTTSEEEEETTTTEEEEC
T ss_pred             EcCCCCCCCcccc--eEEEeCCCEEEEECCccCCCCC----CCCCeEEEEECCCCeEEEe
Confidence            88776 4666654  557777 999999998755321    1356899999999999965

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=100.00  E-value=4.6e-36  Score=304.88  Aligned_cols=328  Identities=13%  Similarity=0.081  Sum_probs=230.4

Q ss_pred             HHHHhh--ccEEEEecCCCCC---CCccccceeeeeccCCCceEeecCCCCCccccccce--EEEec-CCCchhHHHhhh
Q 016413           26 LGAALI--ADFMWASSSSSFS---SSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRES--VAVID-KKGQDAERFLSA   97 (390)
Q Consensus        26 ~~~~~~--~~~l~~~GG~~~~---~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~--~~~~~-~~~~~~~~~~~~   97 (390)
                      |+++++  +++||++||....   .....++.+++||+.+++|..++.|+.+   |..++  ++++. +.-...+.....
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~---~~~~~~~~~~~~~g~lyv~GG~~~~  265 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK---HDMFCPGISMDGNGQIVVTGGNDAK  265 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS---CCCSSCEEEECTTSCEEEECSSSTT
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC---CCCccccccCCCCCCEEEeCCCCCC
Confidence            344555  9999999997221   0012346799999999999999988776   65554  44443 331111111112


Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEE-CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecC-----CCCCCCCCcc
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRF-----DMPKDMAHSH  171 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-----~l~~~~~r~~  171 (390)
                      +++.||+.+++|+++++|+.+|..|+++++ +++|||+||.......++++|+||+.+++|+.++     +|+.  .|..
T Consensus       266 ~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~--~~~~  343 (656)
T 1k3i_A          266 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT--ADKQ  343 (656)
T ss_dssp             CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCC--CCTT
T ss_pred             ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccc--cccc
Confidence            799999999999999999999999999999 9999999995433445788999999999999974     3433  3433


Q ss_pred             eEEEEeCCEEEEEeceeCCCC-CCCCceEEEEECCCCCeEeCC-CCCC------CCCCceEEE---ECCEEEEEccCCCC
Q 016413          172 LGVVSDGRYIYIVSGQYGPQC-RGPTSRTFVLDSETRKWDSIP-PLPS------PRYSPATQL---WRGRLHVMGGSKEN  240 (390)
Q Consensus       172 ~~~~~~~~~iyv~GG~~~~~~-~~~~~~v~~yd~~~~~W~~~~-~~p~------~r~~~~~~~---~~~~iyv~GG~~~~  240 (390)
                       +++..++++|++||.++... ....+++++||++++.|.... ..+.      ++..++++.   .+++|||+||....
T Consensus       344 -~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~  422 (656)
T 1k3i_A          344 -GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY  422 (656)
T ss_dssp             -GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred             -ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence             55568999999999876421 124689999999999987543 2221      233445543   58999999997431


Q ss_pred             ---CCCCCcceEEeeeeccccccCCeEEcc--CCCCCCCceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceec
Q 016413          241 ---RHTPGLEHWSIAVKDGKALEKAWRTEI--PIPRGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVY  314 (390)
Q Consensus       241 ---~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  314 (390)
                         ....  .+.++  +.||+.+++|+.+.  +||.+|..++++++ +++|||+||.+.....           .....+
T Consensus       423 ~~~~~~~--~~~~v--~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~-----------~~~~~~  487 (656)
T 1k3i_A          423 QDSDATT--NAHII--TLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF-----------EDSTPV  487 (656)
T ss_dssp             SSSBCCC--CEEEE--ECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT-----------CCCSBC
T ss_pred             CCCCcCC--cceEE--EcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc-----------CCCCcc
Confidence               1122  12222  23448999999986  89999988888888 9999999997532100           012356


Q ss_pred             CcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecC
Q 016413          315 GDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLD  378 (390)
Q Consensus       315 ~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~  378 (390)
                      .++++|| .+++|+.+++++.+|..|++++...+++|||+||........    ..-++++|.|.
T Consensus       488 ~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~~~~----~~~~~e~~~Pp  548 (656)
T 1k3i_A          488 FTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTT----NHFDAQIFTPN  548 (656)
T ss_dssp             CCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTCSC----CCCEEEEEECG
T ss_pred             cceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCCCCC----CeeEEEEEeCh
Confidence            7899999 788999999999999988654333499999999964322100    12357778764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=100.00  E-value=1.9e-34  Score=292.94  Aligned_cols=298  Identities=9%  Similarity=0.026  Sum_probs=214.9

Q ss_pred             eeeeeccCCCceEeecCCCCCccccccceEEEe--cCC----CchhHH------HhhhcccccccCCCCeEECCCCCCcC
Q 016413           52 VASNWALEKSGVVVIPHVNATKIDRQRESVAVI--DKK----GQDAER------FLSATFADLPAPDLEWEQMPSAPVPR  119 (390)
Q Consensus        52 ~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~--~~~----~~~~~~------~~~~~~~~~~~~~~~W~~~~~~~~~R  119 (390)
                      .++.|||.+++|..+++++.     ..++++++  ++.    |.....      .....++.||+.+++|+.++.+|.+|
T Consensus       167 ~~~~~dp~~~~W~~~~~~P~-----~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~  241 (656)
T 1k3i_A          167 SYTAPQPGLGRWGPTIDLPI-----VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH  241 (656)
T ss_dssp             CCCCCCTTSCEEEEEEECSS-----CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC
T ss_pred             ccccCCCCCCeeeeeccCCC-----CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC
Confidence            36788999999999888753     34555555  222    111000      01126899999999999999998888


Q ss_pred             CCce--EE-EECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-CCEEEEEece-eCCCCCC
Q 016413          120 LDGA--AI-QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQ-YGPQCRG  194 (390)
Q Consensus       120 ~~~~--~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~~~iyv~GG~-~~~~~~~  194 (390)
                      ..++  ++ ..+++|||+||.+..     ++++||+.+++|+.+++|+.  +|..|+++++ +++|||+||. ++..   
T Consensus       242 ~~~~~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~~~~~--~R~~~s~~~~~dg~iyv~GG~~~~~~---  311 (656)
T 1k3i_A          242 DMFCPGISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGPDMQV--ARGYQSSATMSDGRVFTIGGSWSGGV---  311 (656)
T ss_dssp             CCSSCEEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECCCCSS--CCSSCEEEECTTSCEEEECCCCCSSS---
T ss_pred             CCccccccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECCCCCc--cccccceEEecCCeEEEEeCcccCCc---
Confidence            7654  33 358999999998653     69999999999999999887  6888998988 9999999995 4332   


Q ss_pred             CCceEEEEECCCCCeEeC-----CCCCCCCCCceEEEECCEEEEEccCCCCC----CCCCcceEEeeeeccccccCCeEE
Q 016413          195 PTSRTFVLDSETRKWDSI-----PPLPSPRYSPATQLWRGRLHVMGGSKENR----HTPGLEHWSIAVKDGKALEKAWRT  265 (390)
Q Consensus       195 ~~~~v~~yd~~~~~W~~~-----~~~p~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~~~~~~~~~~~~~~~W~~  265 (390)
                      ..+++++||+.+++|+.+     .+|+..|.. +++..++++|++||.++..    ....++.|+       +.+++|..
T Consensus       312 ~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd-------~~~~~w~~  383 (656)
T 1k3i_A          312 FEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYY-------TSGSGDVK  383 (656)
T ss_dssp             CCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEE-------CSTTCEEE
T ss_pred             ccccceEeCCCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeee-------cCCcceee
Confidence            478999999999999997     456666553 5667899999999986532    233445555       68889876


Q ss_pred             ccCCC-C------CCCceeEEE---ECCEEEEEcCCCCCCCCCCCCCccccccccceecC---cEEeeC-CCCCeEECC-
Q 016413          266 EIPIP-R------GGPHRACFV---FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYG---DVYMLD-DEMKWKVLP-  330 (390)
Q Consensus       266 ~~~~p-~------~~~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~yd-~~~~W~~~~-  330 (390)
                      ....+ .      .+..++++.   .+++||++||......              ...++   ++++|| .+++|+.+. 
T Consensus       384 ~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~--------------~~~~~~~~~v~~yd~~~~~W~~~~~  449 (656)
T 1k3i_A          384 SAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD--------------SDATTNAHIITLGEPGTSPNTVFAS  449 (656)
T ss_dssp             EEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS--------------SBCCCCEEEEECCSTTSCCEEEECT
T ss_pred             cCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC--------------CCcCCcceEEEcCCCCCCCeeEEcc
Confidence            43222 1      222334443   5899999999753110              01223   689999 788999986 


Q ss_pred             -CCCCCCCcceeEEEEE-CCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeeccCCC
Q 016413          331 -PMPKPNSHIECAWVIV-NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYRPP  389 (390)
Q Consensus       331 -~~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~P  389 (390)
                       .||.+|..+.  ++++ +++|||+||.+...... ....++++++||+++++|..++.+|
T Consensus       450 ~~mp~~R~~~~--~~~l~~g~i~v~GG~~~~~~~~-~~~~~~~v~~ydp~t~~W~~~~~~~  507 (656)
T 1k3i_A          450 NGLYFARTFHT--SVVLPDGSTFITGGQRRGIPFE-DSTPVFTPEIYVPEQDTFYKQNPNS  507 (656)
T ss_dssp             TCCSSCCBSCE--EEECTTSCEEEECCBSBCCTTC-CCSBCCCCEEEEGGGTEEEECCCCS
T ss_pred             CCCCCCcccCC--eEECCCCCEEEECCcccCcCcC-CCCcccceEEEcCCCCceeecCCCC
Confidence             8999887653  3555 99999999976332100 0115678999999999999998776

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.84  E-value=0.012  Score=53.43  Aligned_cols=270  Identities=13%  Similarity=0.101  Sum_probs=137.9

Q ss_pred             cceeeeeccCCCceEeec-C-CCCCccccccceEEEecCCCchhHHHhhhcccccccCCCCe-EECCCCCCcCCCceEEE
Q 016413           50 LSVASNWALEKSGVVVIP-H-VNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEW-EQMPSAPVPRLDGAAIQ  126 (390)
Q Consensus        50 ~~~~~~~d~~~~~W~~l~-~-~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W-~~~~~~~~~R~~~~~~~  126 (390)
                      -+++..+|+.+.+...-- . ....+.+....++++.++.-..... .+..+..+|+.+.+- ..++....|   ..++.
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~-~~~~v~viD~~t~~~~~~i~~~~~p---~~i~~   91 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVN-NSHVIFAIDINTFKEVGRITGFTSP---RYIHF   91 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEG-GGTEEEEEETTTCCEEEEEECCSSE---EEEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEc-CCCEEEEEECcccEEEEEcCCCCCC---cEEEE
Confidence            357899999998875411 0 0011112223344443333222211 234788888887654 334333333   23333


Q ss_pred             -ECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCC--CCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEE
Q 016413          127 -IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKD--MAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD  203 (390)
Q Consensus       127 -~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd  203 (390)
                       -++++||....+      ..+.++|+.+.+-...-++...  ....-..++..++++|+..-       ...+.+.++|
T Consensus        92 ~~~g~lyv~~~~~------~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~-------~~~~~v~viD  158 (328)
T 3dsm_A           92 LSDEKAYVTQIWD------YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCW-------SYQNRILKID  158 (328)
T ss_dssp             EETTEEEEEEBSC------SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEEC-------TTCCEEEEEE
T ss_pred             eCCCeEEEEECCC------CeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcC-------CCCCEEEEEE
Confidence             688999987432      4699999998875422111110  00022234458999999851       0146799999


Q ss_pred             CCCCCeEeCCCCCCCCCCceEE-EECCEEEEEccCCCCCC-----CCCcceEEeeeeccccccCCeEEccCCCCCCCcee
Q 016413          204 SETRKWDSIPPLPSPRYSPATQ-LWRGRLHVMGGSKENRH-----TPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRA  277 (390)
Q Consensus       204 ~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~-----~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~  277 (390)
                      +.+.+....-+.  +..-+.++ .-++++|+..-......     ...+.++|       +.+.+....-.++.......
T Consensus       159 ~~t~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id-------~~t~~v~~~~~~~~g~~p~~  229 (328)
T 3dsm_A          159 TETDKVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRID-------AETFTVEKQFKFKLGDWPSE  229 (328)
T ss_dssp             TTTTEEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEE-------TTTTEEEEEEECCTTCCCEE
T ss_pred             CCCCeEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEE-------CCCCeEEEEEecCCCCCcee
Confidence            998775432221  11112233 33678888863221100     12344444       56666554333443322234


Q ss_pred             EEEE--CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEE--ECCEEEE
Q 016413          278 CFVF--NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVI--VNNSIII  352 (390)
Q Consensus       278 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~--~~~~l~v  352 (390)
                      ++..  ++.||+..+                         .++++| .+.+.....-.+.. .....++++  .++.|||
T Consensus       230 la~~~d~~~lyv~~~-------------------------~v~~~d~~t~~~~~~~~~~~~-~~~p~gi~vdp~~g~lyv  283 (328)
T 3dsm_A          230 VQLNGTRDTLYWINN-------------------------DIWRMPVEADRVPVRPFLEFR-DTKYYGLTVNPNNGEVYV  283 (328)
T ss_dssp             EEECTTSCEEEEESS-------------------------SEEEEETTCSSCCSSCSBCCC-SSCEEEEEECTTTCCEEE
T ss_pred             EEEecCCCEEEEEcc-------------------------EEEEEECCCCceeeeeeecCC-CCceEEEEEcCCCCeEEE
Confidence            4554  567888754                         188999 55543221112211 112233334  3688999


Q ss_pred             EcCCCCCCCcceeeEEeeeEEEeecCc
Q 016413          353 TGGTTEKHPMTKRMILVGEVFQFHLDS  379 (390)
Q Consensus       353 ~GG~~~~~~~~~~~~~~~~v~~yd~~~  379 (390)
                      ....+..        ....|.+||++.
T Consensus       284 a~~~~y~--------~~~~V~v~d~~g  302 (328)
T 3dsm_A          284 ADAIDYQ--------QQGIVYRYSPQG  302 (328)
T ss_dssp             EECTTSS--------SEEEEEEECTTC
T ss_pred             Ecccccc--------cCCEEEEECCCC
Confidence            8632211        123699999873

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.72  E-value=0.029  Score=51.74  Aligned_cols=268  Identities=12%  Similarity=0.143  Sum_probs=136.4

Q ss_pred             HHhhccEEEEecCCCCCCCccccceeeeeccCCCc--eEeecCCCCCc----cccccceEEEecCCCchhHHHhhhcccc
Q 016413           28 AALIADFMWASSSSSFSSSSAHLSVASNWALEKSG--VVVIPHVNATK----IDRQRESVAVIDKKGQDAERFLSATFAD  101 (390)
Q Consensus        28 ~~~~~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~--W~~l~~~~~~p----~~r~~~~~~~~~~~~~~~~~~~~~~~~~  101 (390)
                      -++.++.||+....  +       .+.+||+.+.+  |..-.......    ........++.++.-...  .....++.
T Consensus        49 p~v~~~~v~~~~~~--g-------~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~--~~~g~l~a  117 (376)
T 3q7m_A           49 PALADNVVYAADRA--G-------LVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIG--SEKAQVYA  117 (376)
T ss_dssp             CEEETTEEEEECTT--S-------EEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEE--ETTSEEEE
T ss_pred             cEEECCEEEEEcCC--C-------eEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEE--cCCCEEEE
Confidence            35567888876532  3       68899987654  76533211100    001111112221111110  11236888


Q ss_pred             cccCCC--CeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCc--eeecCCCCCCCCCcceEEEEe
Q 016413          102 LPAPDL--EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSD  177 (390)
Q Consensus       102 ~~~~~~--~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~~r~~~~~~~~  177 (390)
                      +|..+.  .|+.-..-.   ...+.++.++.||+... +      ..+..||+.+.+  |+.-...+....+...+.+..
T Consensus       118 ~d~~tG~~~W~~~~~~~---~~~~p~~~~~~v~v~~~-~------g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~  187 (376)
T 3q7m_A          118 LNTSDGTVAWQTKVAGE---ALSRPVVSDGLVLIHTS-N------GQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA  187 (376)
T ss_dssp             EETTTCCEEEEEECSSC---CCSCCEEETTEEEEECT-T------SEEEEEETTTCCEEEEEECCC-----CCCCCCEEE
T ss_pred             EECCCCCEEEEEeCCCc---eEcCCEEECCEEEEEcC-C------CeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE
Confidence            887655  576532211   12233556888887532 1      359999998765  876433222101223344556


Q ss_pred             CCEEEEEeceeCCCCCCCCceEEEEECCCC--CeEeCCCCCCCC--------CCceEEEECCEEEEEccCCCCCCCCCcc
Q 016413          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSIPPLPSPR--------YSPATQLWRGRLHVMGGSKENRHTPGLE  247 (390)
Q Consensus       178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~  247 (390)
                      ++.||+-..         ...+..+|+.+.  .|+.-...+...        .....+..++.||+.+.      ...+.
T Consensus       188 ~~~v~~g~~---------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~------~g~l~  252 (376)
T 3q7m_A          188 FGAAVVGGD---------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY------NGNLT  252 (376)
T ss_dssp             TTEEEECCT---------TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT------TSCEE
T ss_pred             CCEEEEEcC---------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec------CcEEE
Confidence            887777321         346888998765  487643332211        22344567888888752      12344


Q ss_pred             eEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCC--
Q 016413          248 HWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM--  324 (390)
Q Consensus       248 ~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~--  324 (390)
                      .++.     ......|+....  .   ..+.++.++.||+.... +                      .++.+| .+.  
T Consensus       253 ~~d~-----~tG~~~w~~~~~--~---~~~~~~~~~~l~~~~~~-g----------------------~l~~~d~~tG~~  299 (376)
T 3q7m_A          253 ALDL-----RSGQIMWKRELG--S---VNDFIVDGNRIYLVDQN-D----------------------RVMALTIDGGVT  299 (376)
T ss_dssp             EEET-----TTCCEEEEECCC--C---EEEEEEETTEEEEEETT-C----------------------CEEEEETTTCCE
T ss_pred             EEEC-----CCCcEEeeccCC--C---CCCceEECCEEEEEcCC-C----------------------eEEEEECCCCcE
Confidence            4442     122335765321  1   23456778888887542 1                      388998 443  


Q ss_pred             CeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccc
Q 016413          325 KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLV  381 (390)
Q Consensus       325 ~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~  381 (390)
                      .|+.-. ++....   .+.+..++.||+....   .          .+++||+++.+
T Consensus       300 ~w~~~~-~~~~~~---~~~~~~~~~l~v~~~~---g----------~l~~~d~~tG~  339 (376)
T 3q7m_A          300 LWTQSD-LLHRLL---TSPVLYNGNLVVGDSE---G----------YLHWINVEDGR  339 (376)
T ss_dssp             EEEECT-TTTSCC---CCCEEETTEEEEECTT---S----------EEEEEETTTCC
T ss_pred             EEeecc-cCCCcc---cCCEEECCEEEEEeCC---C----------eEEEEECCCCc
Confidence            687631 222111   1235678888876421   1          37788877654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.69  E-value=0.0028  Score=54.96  Aligned_cols=195  Identities=13%  Similarity=0.071  Sum_probs=116.1

Q ss_pred             CCCCCCcCCCc--eEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeC
Q 016413          112 MPSAPVPRLDG--AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYG  189 (390)
Q Consensus       112 ~~~~~~~R~~~--~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~  189 (390)
                      +...|.....+  ++...++.||+-.|..+.    +.+.++|+.+.+=...-+++.  .-...+++..+++||+....  
T Consensus        12 ~~~~phd~~~ftqGL~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~~l~~--~~fgeGi~~~~~~ly~ltw~--   83 (243)
T 3mbr_X           12 VKRYPHDTTAFTEGLFYLRGHLYESTGETGR----SSVRKVDLETGRILQRAEVPP--PYFGAGIVAWRDRLIQLTWR--   83 (243)
T ss_dssp             EEEEECCTTCCEEEEEEETTEEEEEECCTTS----CEEEEEETTTCCEEEEEECCT--TCCEEEEEEETTEEEEEESS--
T ss_pred             EEEcCCCCccccccEEEECCEEEEECCCCCC----ceEEEEECCCCCEEEEEeCCC--CcceeEEEEeCCEEEEEEee--
Confidence            33334444443  667778999999998753    469999999998765555554  34567788899999998632  


Q ss_pred             CCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEc---
Q 016413          190 PQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE---  266 (390)
Q Consensus       190 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~---  266 (390)
                            .+.+++||+++.+  .+...+.+..+.+++..+++||+.-|.      ..+..+|       |++.+-..-   
T Consensus        84 ------~~~v~v~D~~tl~--~~~ti~~~~~Gwglt~dg~~L~vSdgs------~~l~~iD-------p~t~~~~~~I~V  142 (243)
T 3mbr_X           84 ------NHEGFVYDLATLT--PRARFRYPGEGWALTSDDSHLYMSDGT------AVIRKLD-------PDTLQQVGSIKV  142 (243)
T ss_dssp             ------SSEEEEEETTTTE--EEEEEECSSCCCEEEECSSCEEEECSS------SEEEEEC-------TTTCCEEEEEEC
T ss_pred             ------CCEEEEEECCcCc--EEEEEeCCCCceEEeeCCCEEEEECCC------CeEEEEe-------CCCCeEEEEEEE
Confidence                  5779999998754  333333344566777778889998652      2344444       555543321   


Q ss_pred             cCCCCCCC-ceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCC---CeEECCCCCC-------
Q 016413          267 IPIPRGGP-HRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM---KWKVLPPMPK-------  334 (390)
Q Consensus       267 ~~~p~~~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~---~W~~~~~~~~-------  334 (390)
                      ...+.+.. --.....+++||+---.                      .++|.+-| .+.   .|-.+..+..       
T Consensus       143 ~~~g~~~~~lNeLe~~~G~lyanvw~----------------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~  200 (243)
T 3mbr_X          143 TAGGRPLDNLNELEWVNGELLANVWL----------------------TSRIARIDPASGKVVAWIDLQALVPDADALTD  200 (243)
T ss_dssp             EETTEECCCEEEEEEETTEEEEEETT----------------------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCC
T ss_pred             ccCCcccccceeeEEeCCEEEEEECC----------------------CCeEEEEECCCCCEEEEEECCcCccccccccC
Confidence            11122211 11344568998855432                      23589999 443   5555543321       


Q ss_pred             CCCcceeEEEEE--CCEEEEEcCCC
Q 016413          335 PNSHIECAWVIV--NNSIIITGGTT  357 (390)
Q Consensus       335 ~~~~~~~~~~~~--~~~l~v~GG~~  357 (390)
                      +.....-+++..  ++++||.|=.-
T Consensus       201 ~~~~vlNGIA~d~~~~~lfVTGK~w  225 (243)
T 3mbr_X          201 STNDVLNGIAFDAEHDRLFVTGKRW  225 (243)
T ss_dssp             TTSSCEEEEEEETTTTEEEEEETTC
T ss_pred             CcCCceEEEEEcCCCCEEEEECCCC
Confidence            222222233333  57888887653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.61  E-value=0.0067  Score=55.23  Aligned_cols=225  Identities=7%  Similarity=0.004  Sum_probs=118.1

Q ss_pred             hcccccccCCCCeEECC-----CCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCce-eecCCCCCCCCCc
Q 016413           97 ATFADLPAPDLEWEQMP-----SAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW-VDRFDMPKDMAHS  170 (390)
Q Consensus        97 ~~~~~~~~~~~~W~~~~-----~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~l~~~~~r~  170 (390)
                      ..+..+|+.+.+....-     ..+.......++..++++||....+      +.+.++|+.+.+- ..++....     
T Consensus        17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~------~~v~viD~~t~~~~~~i~~~~~-----   85 (328)
T 3dsm_A           17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNS------HVIFAIDINTFKEVGRITGFTS-----   85 (328)
T ss_dssp             BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGG------TEEEEEETTTCCEEEEEECCSS-----
T ss_pred             ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCC------CEEEEEECcccEEEEEcCCCCC-----
Confidence            36777777776654311     1122223345666799999987532      4699999998775 33432222     


Q ss_pred             ceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCC----CCCceEEEECCEEEEEccCCCCCCCCC
Q 016413          171 HLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSP----RYSPATQLWRGRLHVMGGSKENRHTPG  245 (390)
Q Consensus       171 ~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~----r~~~~~~~~~~~iyv~GG~~~~~~~~~  245 (390)
                      -..++. .++++|+....        ...+.++|+.+.+-...-+....    ..-..++..+++|||..-.    ....
T Consensus        86 p~~i~~~~~g~lyv~~~~--------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~----~~~~  153 (328)
T 3dsm_A           86 PRYIHFLSDEKAYVTQIW--------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS----YQNR  153 (328)
T ss_dssp             EEEEEEEETTEEEEEEBS--------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT----TCCE
T ss_pred             CcEEEEeCCCeEEEEECC--------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC----CCCE
Confidence            223444 67899998642        36789999998764321111110    0223455589999998521    1234


Q ss_pred             cceEEeeeeccccccCCeEEccCC-CCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CC
Q 016413          246 LEHWSIAVKDGKALEKAWRTEIPI-PRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DE  323 (390)
Q Consensus       246 ~~~~~~~~~~~~~~~~~W~~~~~~-p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~  323 (390)
                      +.++|       +.+.+.....+. ..+.  ..++.-++++|+.........         .   ...-...++++| .+
T Consensus       154 v~viD-------~~t~~~~~~i~~g~~p~--~i~~~~dG~l~v~~~~~~~~~---------~---~~~~~~~v~~id~~t  212 (328)
T 3dsm_A          154 ILKID-------TETDKVVDELTIGIQPT--SLVMDKYNKMWTITDGGYEGS---------P---YGYEAPSLYRIDAET  212 (328)
T ss_dssp             EEEEE-------TTTTEEEEEEECSSCBC--CCEECTTSEEEEEBCCBCTTC---------S---SCBCCCEEEEEETTT
T ss_pred             EEEEE-------CCCCeEEEEEEcCCCcc--ceEEcCCCCEEEEECCCccCC---------c---cccCCceEEEEECCC
Confidence            55555       455554332221 1111  122333688888754321100         0   000024599999 55


Q ss_pred             CCeEECCCCCCCCCcceeEEEEE--CCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccce
Q 016413          324 MKWKVLPPMPKPNSHIECAWVIV--NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVI  382 (390)
Q Consensus       324 ~~W~~~~~~~~~~~~~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W  382 (390)
                      .+....-.++....  ...++..  ++.||+..+               .++++|+++.+.
T Consensus       213 ~~v~~~~~~~~g~~--p~~la~~~d~~~lyv~~~---------------~v~~~d~~t~~~  256 (328)
T 3dsm_A          213 FTVEKQFKFKLGDW--PSEVQLNGTRDTLYWINN---------------DIWRMPVEADRV  256 (328)
T ss_dssp             TEEEEEEECCTTCC--CEEEEECTTSCEEEEESS---------------SEEEEETTCSSC
T ss_pred             CeEEEEEecCCCCC--ceeEEEecCCCEEEEEcc---------------EEEEEECCCCce
Confidence            54432212322111  1223333  567887644               277888877654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.37  E-value=0.0012  Score=61.15  Aligned_cols=179  Identities=12%  Similarity=0.065  Sum_probs=88.9

Q ss_pred             cEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCCCch-hHHHhhhcccccccCCCCeEE
Q 016413           33 DFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQD-AERFLSATFADLPAPDLEWEQ  111 (390)
Q Consensus        33 ~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~W~~  111 (390)
                      .++|+.|+. ++       .+..||+.+.+-...-.....     ..+++...+.... .....+..+..+|..+.+-..
T Consensus         2 ~~l~vs~~~-d~-------~v~v~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~   68 (391)
T 1l0q_A            2 TFAYIANSE-SD-------NISVIDVTSNKVTATIPVGSN-----PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA   68 (391)
T ss_dssp             EEEEEEETT-TT-------EEEEEETTTTEEEEEEECSSS-----EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             CEEEEEcCC-CC-------EEEEEECCCCeEEEEeecCCC-----cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEE
Confidence            567888877 55       788899877654332221111     1223332222111 111123467777776654432


Q ss_pred             CCCCCCcCCCceEEEE--CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe--CCEEEEEece
Q 016413          112 MPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQ  187 (390)
Q Consensus       112 ~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~--~~~iyv~GG~  187 (390)
                      .-..+.  .-.+++..  +.+||+.+..+      ..+.+||+.+++-...-...    ....+++..  +..||+.++.
T Consensus        69 ~~~~~~--~v~~~~~spdg~~l~~~~~~~------~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~  136 (391)
T 1l0q_A           69 TVPAGS--SPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNG  136 (391)
T ss_dssp             EEECSS--SEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETT
T ss_pred             EEECCC--CccceEECCCCCEEEEEECCC------CEEEEEECCCCeEEEEEeCC----CCcceEEECCCCCEEEEEeCC
Confidence            211111  11222222  34566665433      35999999988754432222    122334433  4467777642


Q ss_pred             eCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          188 YGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       188 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                              ...+.+||+.+.+....-..  ...-..++..  ++.||+.++.+     ..+..|++
T Consensus       137 --------~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~  187 (391)
T 1l0q_A          137 --------DKTVSVINTVTKAVINTVSV--GRSPKGIAVTPDGTKVYVANFDS-----MSISVIDT  187 (391)
T ss_dssp             --------TTEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTT-----TEEEEEET
T ss_pred             --------CCEEEEEECCCCcEEEEEec--CCCcceEEECCCCCEEEEEeCCC-----CEEEEEEC
Confidence                    35689999987765433221  1111223322  34677776543     34666663

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.35  E-value=0.011  Score=51.22  Aligned_cols=111  Identities=18%  Similarity=0.194  Sum_probs=74.4

Q ss_pred             cCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCC
Q 016413          160 RFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKE  239 (390)
Q Consensus       160 ~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  239 (390)
                      +...|.+..-+..++...++.||+-.|..+      .+.+.++|+++.+=..--+++..-.+.+++..+++||+....+ 
T Consensus        12 ~~~~phd~~~ftqGL~~~~~~LyestG~~g------~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~-   84 (243)
T 3mbr_X           12 VKRYPHDTTAFTEGLFYLRGHLYESTGETG------RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN-   84 (243)
T ss_dssp             EEEEECCTTCCEEEEEEETTEEEEEECCTT------SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-
T ss_pred             EEEcCCCCccccccEEEECCEEEEECCCCC------CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC-
Confidence            334444434556678888999999988654      4678999999987655556666556677788999999996442 


Q ss_pred             CCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcC
Q 016413          240 NRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGG  290 (390)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG  290 (390)
                          ..+.+||       +  .+.+.+..++.+..+.+++.-+++||+.-|
T Consensus        85 ----~~v~v~D-------~--~tl~~~~ti~~~~~Gwglt~dg~~L~vSdg  122 (243)
T 3mbr_X           85 ----HEGFVYD-------L--ATLTPRARFRYPGEGWALTSDDSHLYMSDG  122 (243)
T ss_dssp             ----SEEEEEE-------T--TTTEEEEEEECSSCCCEEEECSSCEEEECS
T ss_pred             ----CEEEEEE-------C--CcCcEEEEEeCCCCceEEeeCCCEEEEECC
Confidence                3455555       2  333344444433445567777788998876

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.31  E-value=0.007  Score=55.32  Aligned_cols=141  Identities=11%  Similarity=0.113  Sum_probs=71.6

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-C--CEEEEEeceeCCCCCCCCceEEEEECC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-G--RYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~v~~yd~~  205 (390)
                      +.+++.|+.++      .+.+||..+++|..+..+... ...-.+++.. +  +.+++.|+.        -..+.+||..
T Consensus        69 ~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~--------d~~i~v~d~~  133 (379)
T 3jrp_A           69 GTILASCSYDG------KVLIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPLLLVASS--------DGKVSVVEFK  133 (379)
T ss_dssp             CSEEEEEETTS------CEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEET--------TSEEEEEECC
T ss_pred             CCEEEEeccCC------EEEEEEcCCCceeEeeeecCC-CcceEEEEeCCCCCCCEEEEecC--------CCcEEEEecC
Confidence            57777887763      488899999888766554431 1222233332 2  556777654        3457788877


Q ss_pred             CCCeEeCCCCCCCCCC-ceEEEE--------------CCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCC
Q 016413          206 TRKWDSIPPLPSPRYS-PATQLW--------------RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIP  270 (390)
Q Consensus       206 ~~~W~~~~~~p~~r~~-~~~~~~--------------~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p  270 (390)
                      +..-.....+...... .+++..              ++.+++.|+.+     ..+..|++.     .....|.....+.
T Consensus       134 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~-----~~~~~~~~~~~~~  203 (379)
T 3jrp_A          134 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-----NLVKIWKYN-----SDAQTYVLESTLE  203 (379)
T ss_dssp             TTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT-----SCEEEEEEE-----TTTTEEEEEEEEC
T ss_pred             CCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC-----CeEEEEEec-----CCCcceeeEEEEe
Confidence            6532111011111111 122222              46777777754     357777752     1223344443332


Q ss_pred             CCCCceeEEEE--C---CEEEEEcCCCCC
Q 016413          271 RGGPHRACFVF--N---DRLFVVGGQEGD  294 (390)
Q Consensus       271 ~~~~~~~~~~~--~---~~iyv~GG~~~~  294 (390)
                      .......++.+  +   +++++.|+.++.
T Consensus       204 ~h~~~v~~~~~sp~~~~~~~l~s~~~dg~  232 (379)
T 3jrp_A          204 GHSDWVRDVAWSPTVLLRSYLASVSQDRT  232 (379)
T ss_dssp             CCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred             cccCcEeEEEECCCCCCCCeEEEEeCCCE
Confidence            21111222222  3   678888887653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.28  E-value=0.0072  Score=52.90  Aligned_cols=198  Identities=12%  Similarity=0.043  Sum_probs=113.2

Q ss_pred             eEECCCCCCcCCC--ceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEec
Q 016413          109 WEQMPSAPVPRLD--GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSG  186 (390)
Q Consensus       109 W~~~~~~~~~R~~--~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG  186 (390)
                      ++.+...|..+..  .++...++.||+..|..+.    +.+.++|+++.+=...-+++.  .-+..+++..+++||+...
T Consensus        31 ~~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~----S~v~~vD~~Tgkv~~~~~l~~--~~FgeGit~~g~~ly~ltw  104 (262)
T 3nol_A           31 YQIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGR----SSIRKVDIESGKTLQQIELGK--RYFGEGISDWKDKIVGLTW  104 (262)
T ss_dssp             EEEEEEEECCTTCEEEEEEEETTEEEEEEEETTE----EEEEEECTTTCCEEEEEECCT--TCCEEEEEEETTEEEEEES
T ss_pred             eEEEEEecCCCCcccceEEEECCEEEEECCCCCC----ceEEEEECCCCcEEEEEecCC--ccceeEEEEeCCEEEEEEe
Confidence            3444444433333  4445558999999997653    468999999987655444543  3355668889999999954


Q ss_pred             eeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEc
Q 016413          187 QYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE  266 (390)
Q Consensus       187 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~  266 (390)
                      .        .+.+++||+++.+=.  ...+.+..+.+++.-+++||+.-|.      +.+..+|       |++.+-..-
T Consensus       105 ~--------~~~v~v~D~~t~~~~--~ti~~~~eG~glt~dg~~L~~SdGs------~~i~~iD-------p~T~~v~~~  161 (262)
T 3nol_A          105 K--------NGLGFVWNIRNLRQV--RSFNYDGEGWGLTHNDQYLIMSDGT------PVLRFLD-------PESLTPVRT  161 (262)
T ss_dssp             S--------SSEEEEEETTTCCEE--EEEECSSCCCCEEECSSCEEECCSS------SEEEEEC-------TTTCSEEEE
T ss_pred             e--------CCEEEEEECccCcEE--EEEECCCCceEEecCCCEEEEECCC------CeEEEEc-------CCCCeEEEE
Confidence            2        577999999886542  2333333556666667788888652      2344443       555543322


Q ss_pred             cCC---CCCCCce-eEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCC---CeEECCCCCC----
Q 016413          267 IPI---PRGGPHR-ACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM---KWKVLPPMPK----  334 (390)
Q Consensus       267 ~~~---p~~~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~---~W~~~~~~~~----  334 (390)
                      -+.   .++.... .+...+++||+---.                      .++|.+-| .+.   .|-.++.+..    
T Consensus       162 I~V~~~g~~~~~lNELe~~~G~lyan~w~----------------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~  219 (262)
T 3nol_A          162 ITVTAHGEELPELNELEWVDGEIFANVWQ----------------------TNKIVRIDPETGKVTGIIDLNGILAEAGP  219 (262)
T ss_dssp             EECEETTEECCCEEEEEEETTEEEEEETT----------------------SSEEEEECTTTCBEEEEEECTTGGGGSCS
T ss_pred             EEeccCCccccccceeEEECCEEEEEEcc----------------------CCeEEEEECCCCcEEEEEECCcCcccccc
Confidence            111   1121110 234558998864322                      23599999 444   4555543321    


Q ss_pred             --CCCcceeEEEEE--CCEEEEEcCCC
Q 016413          335 --PNSHIECAWVIV--NNSIIITGGTT  357 (390)
Q Consensus       335 --~~~~~~~~~~~~--~~~l~v~GG~~  357 (390)
                        +.....-+++..  ++.+||.|-.-
T Consensus       220 ~~~~~~vlNGIA~dp~~~~lfVTGK~W  246 (262)
T 3nol_A          220 LPSPIDVLNGIAWDKEHHRLFVTGKLW  246 (262)
T ss_dssp             CCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred             ccCcCCceEEEEEcCCCCEEEEECCCC
Confidence              112222233333  56888887653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.27  E-value=0.0072  Score=54.45  Aligned_cols=98  Identities=9%  Similarity=-0.010  Sum_probs=45.5

Q ss_pred             cccccccC--CCCeEECCCCCCcCCCceEEEE-CC-EEEEEecCCCCCCCCCeEEEEeCCCC-ceeecCCCCCCCCCcce
Q 016413           98 TFADLPAP--DLEWEQMPSAPVPRLDGAAIQI-KN-LFYVFAGYGSLDYVHSHVDVYNFTDN-KWVDRFDMPKDMAHSHL  172 (390)
Q Consensus        98 ~~~~~~~~--~~~W~~~~~~~~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~l~~~~~r~~~  172 (390)
                      .+..|+..  +.+++.+..++....-..++.. ++ .||+.+..+      ..+.+||+... ....+..++..  ..-.
T Consensus        61 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~--~~~~  132 (343)
T 1ri6_A           61 RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNA------GNVSVTRLEDGLPVGVVDVVEGL--DGCH  132 (343)
T ss_dssp             EEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTT------TEEEEEEEETTEEEEEEEEECCC--TTBC
T ss_pred             eEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCC------CeEEEEECCCCccccccccccCC--CCce
Confidence            45555444  5566655443322222223322 33 466655422      34777877322 22222222221  1122


Q ss_pred             EEEE--eCCEEEEEeceeCCCCCCCCceEEEEECCC-CCeEe
Q 016413          173 GVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSET-RKWDS  211 (390)
Q Consensus       173 ~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~-~~W~~  211 (390)
                      .++.  .+..||+.+..        ...+.+||..+ .+...
T Consensus       133 ~~~~s~dg~~l~~~~~~--------~~~v~~~d~~~~~~~~~  166 (343)
T 1ri6_A          133 SANISPDNRTLWVPALK--------QDRICLFTVSDDGHLVA  166 (343)
T ss_dssp             CCEECTTSSEEEEEEGG--------GTEEEEEEECTTSCEEE
T ss_pred             EEEECCCCCEEEEecCC--------CCEEEEEEecCCCceee
Confidence            2233  24467776522        34588899877 55643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.22  E-value=0.13  Score=47.35  Aligned_cols=212  Identities=17%  Similarity=0.229  Sum_probs=115.0

Q ss_pred             cccccccCCC--CeEECCCCC-------CcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCc--eeecCCCCCC
Q 016413           98 TFADLPAPDL--EWEQMPSAP-------VPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKD  166 (390)
Q Consensus        98 ~~~~~~~~~~--~W~~~~~~~-------~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~  166 (390)
                      .++.+|..+.  .|+.-....       ........+..++.||+....       ..+.++|+.+.+  |+.-.  +..
T Consensus        64 ~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-------g~l~a~d~~tG~~~W~~~~--~~~  134 (376)
T 3q7m_A           64 LVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK-------AQVYALNTSDGTVAWQTKV--AGE  134 (376)
T ss_dssp             EEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT-------SEEEEEETTTCCEEEEEEC--SSC
T ss_pred             eEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC-------CEEEEEECCCCCEEEEEeC--CCc
Confidence            6778887654  576543211       112234445668899885431       359999998764  76532  221


Q ss_pred             CCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCC--eEeCCCCCC--CCCCceEEEECCEEEEEccCCCCCC
Q 016413          167 MAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPS--PRYSPATQLWRGRLHVMGGSKENRH  242 (390)
Q Consensus       167 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~  242 (390)
                         ...+.++.++.||+...         ...+..||+++.+  |+.-.+.+.  .+...+.++.++.||+.. ..    
T Consensus       135 ---~~~~p~~~~~~v~v~~~---------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~-~~----  197 (376)
T 3q7m_A          135 ---ALSRPVVSDGLVLIHTS---------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGG-DN----  197 (376)
T ss_dssp             ---CCSCCEEETTEEEEECT---------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECC-TT----
T ss_pred             ---eEcCCEEECCEEEEEcC---------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEc-CC----
Confidence               12223456888887542         3468999987765  876543221  122334456688877732 11    


Q ss_pred             CCCcceEEeeeeccccccCCeEEccCCCCCC--------CceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceec
Q 016413          243 TPGLEHWSIAVKDGKALEKAWRTEIPIPRGG--------PHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVY  314 (390)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  314 (390)
                       ..+..++.     ......|+.....|...        .....+..++.+|+.+. ++                     
T Consensus       198 -g~l~~~d~-----~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-~g---------------------  249 (376)
T 3q7m_A          198 -GRVSAVLM-----EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY-NG---------------------  249 (376)
T ss_dssp             -TEEEEEET-----TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT-TS---------------------
T ss_pred             -CEEEEEEC-----CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec-Cc---------------------
Confidence             12333432     12344576643333211        12344567888888652 22                     


Q ss_pred             CcEEeeC-CCC--CeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCcc--ceee
Q 016413          315 GDVYMLD-DEM--KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSL--VIIY  384 (390)
Q Consensus       315 ~~v~~yd-~~~--~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~  384 (390)
                       .++.+| .+.  .|+.-.  +.     ....+..++.||+....   .          .+++||+.+.  .|+.
T Consensus       250 -~l~~~d~~tG~~~w~~~~--~~-----~~~~~~~~~~l~~~~~~---g----------~l~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          250 -NLTALDLRSGQIMWKREL--GS-----VNDFIVDGNRIYLVDQN---D----------RVMALTIDGGVTLWTQ  303 (376)
T ss_dssp             -CEEEEETTTCCEEEEECC--CC-----EEEEEEETTEEEEEETT---C----------CEEEEETTTCCEEEEE
T ss_pred             -EEEEEECCCCcEEeeccC--CC-----CCCceEECCEEEEEcCC---C----------eEEEEECCCCcEEEee
Confidence             288898 443  787632  11     12346678888887531   1          3788887664  4653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.19  E-value=0.1  Score=45.74  Aligned_cols=172  Identities=9%  Similarity=0.034  Sum_probs=81.3

Q ss_pred             ccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccCCCCeEE
Q 016413           32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQ  111 (390)
Q Consensus        32 ~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~  111 (390)
                      ++.||+.... .+       .+..||+. .....++.....   ....++++-.+...-.....+..+..+|+. .+...
T Consensus        30 ~g~l~v~~~~-~~-------~v~~~~~~-~~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~   96 (300)
T 2qc5_A           30 DGKVWFTQHK-AN-------KISSLDQS-GRIKEFEVPTPD---AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE   96 (300)
T ss_dssp             TSCEEEEETT-TT-------EEEEECTT-SCEEEEECSSTT---CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CCCEEEEcCC-CC-------eEEEECCC-CceEEEECCCCC---CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE
Confidence            4667776533 22       67788887 665554321110   112233332211111111112357788877 55544


Q ss_pred             CCCCCCcCCCceEEEE-CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeC
Q 016413          112 MPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYG  189 (390)
Q Consensus       112 ~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~  189 (390)
                      .........-.+++.. +++||+.....      ..+.+||+. .+..... ++... ..-.+++. -+++||+...   
T Consensus        97 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~~-g~~~~~~-~~~~~-~~~~~i~~d~~g~l~v~~~---  164 (300)
T 2qc5_A           97 YPLPQPDSGPYGITEGLNGDIWFTQLNG------DRIGKLTAD-GTIYEYD-LPNKG-SYPAFITLGSDNALWFTEN---  164 (300)
T ss_dssp             EECSSTTCCEEEEEECSTTCEEEEETTT------TEEEEECTT-SCEEEEE-CSSTT-CCEEEEEECTTSSEEEEET---
T ss_pred             ecCCCCCCCCccceECCCCCEEEEccCC------CeEEEECCC-CCEEEcc-CCCCC-CCceeEEECCCCCEEEEec---
Confidence            3211111112233332 57888875322      358899987 5554332 22111 22233443 3567888652   


Q ss_pred             CCCCCCCceEEEEECCCCCeEeCCCCCCCCCCc-eEEEE-CCEEEEEc
Q 016413          190 PQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSP-ATQLW-RGRLHVMG  235 (390)
Q Consensus       190 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~G  235 (390)
                           ....+.+||+ +.+...+. ++...... .++.. ++.||+..
T Consensus       165 -----~~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~  205 (300)
T 2qc5_A          165 -----QNNSIGRITN-TGKLEEYP-LPTNAAAPVGITSGNDGALWFVE  205 (300)
T ss_dssp             -----TTTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEE
T ss_pred             -----CCCeEEEECC-CCcEEEee-CCCCCCCcceEEECCCCCEEEEc
Confidence                 1356889998 56665542 22211122 23332 56788874

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.15  E-value=0.031  Score=50.88  Aligned_cols=150  Identities=6%  Similarity=-0.012  Sum_probs=69.6

Q ss_pred             ccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccCCCCeEE
Q 016413           32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQ  111 (390)
Q Consensus        32 ~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~  111 (390)
                      ++.+++.|+. ++       .+..||+.+.++..+..+....  ..-.+++...+...-.....+..+..+|..+.++..
T Consensus        19 ~~~~l~~~~~-d~-------~v~i~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   88 (372)
T 1k8k_C           19 DRTQIAICPN-NH-------EVHIYEKSGNKWVQVHELKEHN--GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   88 (372)
T ss_dssp             TSSEEEEECS-SS-------EEEEEEEETTEEEEEEEEECCS--SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CCCEEEEEeC-CC-------EEEEEeCCCCcEEeeeeecCCC--CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeee
Confidence            5667777777 55       7888998888765554443220  111222222221111101112356667766666544


Q ss_pred             CCCCCCcCCCceEEEE--CCEEEEEecCCCCCCCCCeEEEEeCCCCc-eeecCCCCCCCCCcceEEEEe-CCEEEEEece
Q 016413          112 MPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNK-WVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQ  187 (390)
Q Consensus       112 ~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~l~~~~~r~~~~~~~~-~~~iyv~GG~  187 (390)
                      ...+......-..+.+  +++.++.|+.++      .+..||..+.. |.....+..+....-.+++.. ++.+++.|+.
T Consensus        89 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           89 TLVILRINRAARCVRWAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             eEEeecCCCceeEEEECCCCCEEEEEeCCC------EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence            3222211112222222  466777777653      25556555443 332222211111122233332 5667777764


Q ss_pred             eCCCCCCCCceEEEEECC
Q 016413          188 YGPQCRGPTSRTFVLDSE  205 (390)
Q Consensus       188 ~~~~~~~~~~~v~~yd~~  205 (390)
                      +        ..+..||..
T Consensus       163 d--------g~i~~~d~~  172 (372)
T 1k8k_C          163 D--------FKCRIFSAY  172 (372)
T ss_dssp             T--------SCEEEEECC
T ss_pred             C--------CCEEEEEcc
Confidence            3        346778854

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.12  E-value=0.042  Score=51.84  Aligned_cols=188  Identities=13%  Similarity=0.146  Sum_probs=96.0

Q ss_pred             EEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEEC
Q 016413          125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDS  204 (390)
Q Consensus       125 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~  204 (390)
                      +..++..++.|+.++      .+.+||+.+.+-...  +..  .......+..++..++.|+.+        ..+..||+
T Consensus       205 ~~~~~~~l~s~s~dg------~i~~wd~~~~~~~~~--~~~--~~~~v~~~~~~~~~l~~~~~d--------g~i~iwd~  266 (445)
T 2ovr_B          205 MHLHEKRVVSGSRDA------TLRVWDIETGQCLHV--LMG--HVAAVRCVQYDGRRVVSGAYD--------FMVKVWDP  266 (445)
T ss_dssp             EEEETTEEEEEETTS------EEEEEESSSCCEEEE--EEC--CSSCEEEEEECSSCEEEEETT--------SCEEEEEG
T ss_pred             EEecCCEEEEEeCCC------EEEEEECCCCcEEEE--EcC--CcccEEEEEECCCEEEEEcCC--------CEEEEEEC
Confidence            334555677777653      588899887653321  111  111222233467777777643        34777887


Q ss_pred             CCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCE
Q 016413          205 ETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDR  284 (390)
Q Consensus       205 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~  284 (390)
                      .+.+-  +..+.........+..++..++.|+.+     ..+..|++       .+.+  .+..+........+...++.
T Consensus       267 ~~~~~--~~~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~i~d~-------~~~~--~~~~~~~~~~~v~~~~~~~~  330 (445)
T 2ovr_B          267 ETETC--LHTLQGHTNRVYSLQFDGIHVVSGSLD-----TSIRVWDV-------ETGN--CIHTLTGHQSLTSGMELKDN  330 (445)
T ss_dssp             GGTEE--EEEECCCSSCEEEEEECSSEEEEEETT-----SCEEEEET-------TTCC--EEEEECCCCSCEEEEEEETT
T ss_pred             CCCcE--eEEecCCCCceEEEEECCCEEEEEeCC-----CeEEEEEC-------CCCC--EEEEEcCCcccEEEEEEeCC
Confidence            66532  222222222223344477777777654     35677774       2332  12111111112234455667


Q ss_pred             EEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCC-eEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCc
Q 016413          285 LFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK-WKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPM  362 (390)
Q Consensus       285 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~-W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~  362 (390)
                      .++.|+.++.                      |.+|| .+.+ -..+........  ....+..++++++.|+.++.   
T Consensus       331 ~l~~~~~dg~----------------------i~vwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~l~s~~~dg~---  383 (445)
T 2ovr_B          331 ILVSGNADST----------------------VKIWDIKTGQCLQTLQGPNKHQS--AVTCLQFNKNFVITSSDDGT---  383 (445)
T ss_dssp             EEEEEETTSC----------------------EEEEETTTCCEEEEECSTTSCSS--CEEEEEECSSEEEEEETTSE---
T ss_pred             EEEEEeCCCe----------------------EEEEECCCCcEEEEEccCCCCCC--CEEEEEECCCEEEEEeCCCe---
Confidence            7778876653                      88888 4442 222221111111  23335567778888876533   


Q ss_pred             ceeeEEeeeEEEeecCccce
Q 016413          363 TKRMILVGEVFQFHLDSLVI  382 (390)
Q Consensus       363 ~~~~~~~~~v~~yd~~~~~W  382 (390)
                               |.+||+.+.+.
T Consensus       384 ---------v~iwd~~~~~~  394 (445)
T 2ovr_B          384 ---------VKLWDLKTGEF  394 (445)
T ss_dssp             ---------EEEEETTTCCE
T ss_pred             ---------EEEEECCCCce
Confidence                     66777666543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.98  E-value=0.16  Score=44.33  Aligned_cols=266  Identities=8%  Similarity=0.024  Sum_probs=121.5

Q ss_pred             ccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccCCCCeEE
Q 016413           32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQ  111 (390)
Q Consensus        32 ~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~  111 (390)
                      ++.||+.... .+       .+..||+. .....+......   ....++++-.+...-........++.+++. .+.+.
T Consensus        25 ~g~l~v~~~~-~~-------~v~~~d~~-~~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~   91 (299)
T 2z2n_A           25 KGKVWITQHK-AN-------MISCINLD-GKITEYPLPTPD---AKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKE   91 (299)
T ss_dssp             TSCEEEEETT-TT-------EEEEECTT-CCEEEEECSSTT---CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CCCEEEEecC-CC-------cEEEEcCC-CCeEEecCCccc---CceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEE
Confidence            4567765432 22       57888887 666554421111   112223322211111111112357777765 34443


Q ss_pred             CCCCCCc-CCCceEEEE-CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-CCEEEEEecee
Q 016413          112 MPSAPVP-RLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQY  188 (390)
Q Consensus       112 ~~~~~~~-R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~~~iyv~GG~~  188 (390)
                      .. ++.. ..-.+++.. +++||+.....      ..+.++|+ +.+..... ++.. ...-.+++.. ++.+|+...  
T Consensus        92 ~~-~~~~~~~~~~i~~~~~g~l~v~~~~~------~~i~~~d~-~g~~~~~~-~~~~-~~~~~~i~~~~~g~l~v~~~--  159 (299)
T 2z2n_A           92 YT-LPNPDSAPYGITEGPNGDIWFTEMNG------NRIGRITD-DGKIREYE-LPNK-GSYPSFITLGSDNALWFTEN--  159 (299)
T ss_dssp             EE-CSSTTCCEEEEEECTTSCEEEEETTT------TEEEEECT-TCCEEEEE-CSST-TCCEEEEEECTTSCEEEEET--
T ss_pred             Ee-CCCcCCCceeeEECCCCCEEEEecCC------ceEEEECC-CCCEEEec-CCCC-CCCCceEEEcCCCCEEEEeC--
Confidence            32 2211 112233333 46888875432      35889998 55554432 1211 1223344443 678888642  


Q ss_pred             CCCCCCCCceEEEEECCCCCeEeCCCCCCCCCC-ceEEEE-CCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEc
Q 016413          189 GPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYS-PATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE  266 (390)
Q Consensus       189 ~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~  266 (390)
                            ....+.+||+ +.+..... .+..... ..++.. ++.||+.....     ..+.+|+       + +.+....
T Consensus       160 ------~~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~-------~-~g~~~~~  218 (299)
T 2z2n_A          160 ------QNNAIGRITE-SGDITEFK-IPTPASGPVGITKGNDDALWFVEIIG-----NKIGRIT-------T-SGEITEF  218 (299)
T ss_dssp             ------TTTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEETTT-----TEEEEEC-------T-TCCEEEE
T ss_pred             ------CCCEEEEEcC-CCcEEEee-CCCCCCcceeEEECCCCCEEEEccCC-----ceEEEEC-------C-CCcEEEE
Confidence                  1356899999 66666542 1111111 223332 46788875321     2233343       3 4555443


Q ss_pred             cCCCCCCCceeEEEE--CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeCCCCCeEECCCCCCCCCcceeEEE
Q 016413          267 IPIPRGGPHRACFVF--NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWV  344 (390)
Q Consensus       267 ~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~~~~~~~~~~~~~~  344 (390)
                      . ++........+..  ++.||+....++                      .+.+||+..+...+. ++...... .+++
T Consensus       219 ~-~~~~~~~~~~i~~~~~g~l~v~~~~~~----------------------~i~~~d~~g~~~~~~-~~~~~~~~-~~i~  273 (299)
T 2z2n_A          219 K-IPTPNARPHAITAGAGIDLWFTEWGAN----------------------KIGRLTSNNIIEEYP-IQIKSAEP-HGIC  273 (299)
T ss_dssp             E-CSSTTCCEEEEEECSTTCEEEEETTTT----------------------EEEEEETTTEEEEEE-CSSSSCCE-EEEE
T ss_pred             E-CCCCCCCceeEEECCCCCEEEeccCCc----------------------eEEEECCCCceEEEe-CCCCCCcc-ceEE
Confidence            2 2211111223333  567888753221                      388888533333331 12111111 2223


Q ss_pred             EECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccc
Q 016413          345 IVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLV  381 (390)
Q Consensus       345 ~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~  381 (390)
                      ..++.||+... .  +          .+.+||+.+++
T Consensus       274 ~~~g~l~v~~~-~--~----------~l~~~~~~~~~  297 (299)
T 2z2n_A          274 FDGETIWFAME-C--D----------KIGKLTLIKDN  297 (299)
T ss_dssp             ECSSCEEEEET-T--T----------EEEEEEEC---
T ss_pred             ecCCCEEEEec-C--C----------cEEEEEcCccc
Confidence            36778888753 1  1          37888887754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.92  E-value=0.033  Score=52.52  Aligned_cols=163  Identities=15%  Similarity=0.129  Sum_probs=79.2

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeec-CCCCCCCCCcceEEEE
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDR-FDMPKDMAHSHLGVVS  176 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~l~~~~~r~~~~~~~  176 (390)
                      .+..+|..+.+-...  +......-..+...+..++.|+.++      .+.+||..+..-... ..+..  .......+.
T Consensus       194 ~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~~~~~--~~~~v~~~~  263 (435)
T 1p22_A          194 TVRVWDVNTGEMLNT--LIHHCEAVLHLRFNNGMMVTCSKDR------SIAVWDMASPTDITLRRVLVG--HRAAVNVVD  263 (435)
T ss_dssp             CEEEEESSSCCEEEE--ECCCCSCEEEEECCTTEEEEEETTS------CEEEEECSSSSCCEEEEEECC--CSSCEEEEE
T ss_pred             eEEEEECCCCcEEEE--EcCCCCcEEEEEEcCCEEEEeeCCC------cEEEEeCCCCCCceeeeEecC--CCCcEEEEE
Confidence            566666655543211  1111112222334556777777663      488888876542211 11111  111222222


Q ss_pred             eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeecc
Q 016413          177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDG  256 (390)
Q Consensus       177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~  256 (390)
                      .++..++.|+.        -..+.+||..+.+-..  .+.........+..++.+++.|+.+     ..+..|++     
T Consensus       264 ~~~~~l~s~~~--------dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~g~~d-----g~i~iwd~-----  323 (435)
T 1p22_A          264 FDDKYIVSASG--------DRTIKVWNTSTCEFVR--TLNGHKRGIACLQYRDRLVVSGSSD-----NTIRLWDI-----  323 (435)
T ss_dssp             EETTEEEEEET--------TSEEEEEETTTCCEEE--EEECCSSCEEEEEEETTEEEEEETT-----SCEEEEET-----
T ss_pred             eCCCEEEEEeC--------CCeEEEEECCcCcEEE--EEcCCCCcEEEEEeCCCEEEEEeCC-----CeEEEEEC-----
Confidence            35556666653        2457889987754322  1221222223344466677777654     35777774     


Q ss_pred             ccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCC
Q 016413          257 KALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD  294 (390)
Q Consensus       257 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~  294 (390)
                        .+.+  .+..+........++..+++.++.|+.++.
T Consensus       324 --~~~~--~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~  357 (435)
T 1p22_A          324 --ECGA--CLRVLEGHEELVRCIRFDNKRIVSGAYDGK  357 (435)
T ss_dssp             --TTCC--EEEEECCCSSCEEEEECCSSEEEEEETTSC
T ss_pred             --CCCC--EEEEEeCCcCcEEEEEecCCEEEEEeCCCc
Confidence              2322  222222111223455558888888887653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.90  E-value=0.065  Score=50.51  Aligned_cols=195  Identities=12%  Similarity=0.137  Sum_probs=97.7

Q ss_pred             EEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEE
Q 016413          124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD  203 (390)
Q Consensus       124 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd  203 (390)
                      ++..++..++.|+.++      .+..||+.+.+-..  .+... ...-.++. .++..++.|+.+        ..+..||
T Consensus       244 ~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~--~~~~~-~~~v~~~~-~~~~~l~~~~~d--------~~i~i~d  305 (445)
T 2ovr_B          244 CVQYDGRRVVSGAYDF------MVKVWDPETETCLH--TLQGH-TNRVYSLQ-FDGIHVVSGSLD--------TSIRVWD  305 (445)
T ss_dssp             EEEECSSCEEEEETTS------CEEEEEGGGTEEEE--EECCC-SSCEEEEE-ECSSEEEEEETT--------SCEEEEE
T ss_pred             EEEECCCEEEEEcCCC------EEEEEECCCCcEeE--EecCC-CCceEEEE-ECCCEEEEEeCC--------CeEEEEE
Confidence            3444777788887663      47888887654322  22211 11122333 366677777643        3478899


Q ss_pred             CCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEE-ccCCCCCCCceeEEEEC
Q 016413          204 SETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRT-EIPIPRGGPHRACFVFN  282 (390)
Q Consensus       204 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~-~~~~p~~~~~~~~~~~~  282 (390)
                      ..+.+-..  .+............++.+++.|+.+     ..+..|++       .+.+-.. +...........++..+
T Consensus       306 ~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~vwd~-------~~~~~~~~~~~~~~~~~~v~~~~~~  371 (445)
T 2ovr_B          306 VETGNCIH--TLTGHQSLTSGMELKDNILVSGNAD-----STVKIWDI-------KTGQCLQTLQGPNKHQSAVTCLQFN  371 (445)
T ss_dssp             TTTCCEEE--EECCCCSCEEEEEEETTEEEEEETT-----SCEEEEET-------TTCCEEEEECSTTSCSSCEEEEEEC
T ss_pred             CCCCCEEE--EEcCCcccEEEEEEeCCEEEEEeCC-----CeEEEEEC-------CCCcEEEEEccCCCCCCCEEEEEEC
Confidence            87765322  1111122223334455566666653     35777774       2332211 11111112223455667


Q ss_pred             CEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeE-ECCCCC-CCCCcceeEEEE-ECCEEEEEcCCCC
Q 016413          283 DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWK-VLPPMP-KPNSHIECAWVI-VNNSIIITGGTTE  358 (390)
Q Consensus       283 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~-~~~~~~-~~~~~~~~~~~~-~~~~l~v~GG~~~  358 (390)
                      +.+++.|+.++.                      |.+|| .+.+.. .+.... .+....-.++.. .++.+++.|+.++
T Consensus       372 ~~~l~s~~~dg~----------------------v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg  429 (445)
T 2ovr_B          372 KNFVITSSDDGT----------------------VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG  429 (445)
T ss_dssp             SSEEEEEETTSE----------------------EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             CCEEEEEeCCCe----------------------EEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCC
Confidence            888888887653                      88888 554322 221111 111111112222 3566777888776


Q ss_pred             CCCcceeeEEeeeEEEeecCcc
Q 016413          359 KHPMTKRMILVGEVFQFHLDSL  380 (390)
Q Consensus       359 ~~~~~~~~~~~~~v~~yd~~~~  380 (390)
                      ....        .+++||.+.+
T Consensus       430 ~~~~--------~l~v~df~~~  443 (445)
T 2ovr_B          430 TEET--------KLLVLDFDVD  443 (445)
T ss_dssp             SSCC--------EEEEEECCCC
T ss_pred             CCcc--------EEEEEECCCC
Confidence            6331        4777776643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.047  Score=49.35  Aligned_cols=189  Identities=12%  Similarity=0.145  Sum_probs=89.8

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCC--CceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEEC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTD--NKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDS  204 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~  204 (390)
                      +++.++.|+.++      .+.++|+..  ..++.+..+... ...-.+++. -++.+++.|+.++        .+..||.
T Consensus       118 ~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~--------~i~iW~~  182 (330)
T 2hes_X          118 DGYYLATCSRDK------SVWIWETDESGEEYECISVLQEH-SQDVKHVIWHPSEALLASSSYDD--------TVRIWKD  182 (330)
T ss_dssp             TSCEEEEEETTS------CEEEEECCTTCCCCEEEEEECCC-SSCEEEEEECSSSSEEEEEETTS--------CEEEEEE
T ss_pred             CCCEEEEEeCCC------EEEEEeccCCCCCeEEEEEeccC-CCceEEEEECCCCCEEEEEcCCC--------eEEEEEC
Confidence            567778887764      377788732  345444333321 111122222 2566777777543        3666777


Q ss_pred             CCCCeEeCCCCCCCCCCceEEEE-C---CEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCC--CCCceeE
Q 016413          205 ETRKWDSIPPLPSPRYSPATQLW-R---GRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPR--GGPHRAC  278 (390)
Q Consensus       205 ~~~~W~~~~~~p~~r~~~~~~~~-~---~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~--~~~~~~~  278 (390)
                      .+..|+.+..+......-..+.+ .   +..++.|+.+     ..+..|++..-.- .....|.....++.  ...-.++
T Consensus       183 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D-----~~v~iw~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~v  256 (330)
T 2hes_X          183 YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD-----STVRVWKYMGDDE-DDQQEWVCEAILPDVHKRQVYNV  256 (330)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETT-----SCEEEEEEEEECT-TSCEEEEEEEECCSCCSSCEEEE
T ss_pred             CCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCC-----CeEEEEEecCCCc-cccceeEEeeecccccccceEEE
Confidence            66666655433322111112222 2   3455566543     4577787632110 11234555444432  1111233


Q ss_pred             EEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEE----CCEEEEE
Q 016413          279 FVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIV----NNSIIIT  353 (390)
Q Consensus       279 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~----~~~l~v~  353 (390)
                      +...+.+++.||.++.                      |.+|| .+.+|+.+..............+..    ++++++.
T Consensus       257 ~~s~~~~l~s~~~dg~----------------------v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las  314 (330)
T 2hes_X          257 AWGFNGLIASVGADGV----------------------LAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILAT  314 (330)
T ss_dssp             EECTTSCEEEEETTSC----------------------EEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEE
T ss_pred             EEcCCCEEEEEeCCCE----------------------EEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEE
Confidence            3334556777776543                      77888 6667765432211111101111221    4678888


Q ss_pred             cCCCCC
Q 016413          354 GGTTEK  359 (390)
Q Consensus       354 GG~~~~  359 (390)
                      ||.++.
T Consensus       315 ~s~Dg~  320 (330)
T 2hes_X          315 GGDDGI  320 (330)
T ss_dssp             EETTSE
T ss_pred             ecCCCc
Confidence            887643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.85  E-value=0.024  Score=49.55  Aligned_cols=114  Identities=15%  Similarity=0.120  Sum_probs=70.7

Q ss_pred             eeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEcc
Q 016413          157 WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGG  236 (390)
Q Consensus       157 W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG  236 (390)
                      ++-+...|....-+..++...++.||+..|.++      .+.+.++|+++.+=..--+++..-++.+++..+++||+...
T Consensus        31 ~~vv~~~phd~~~ftqGL~~~~~~LyestG~~g------~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw  104 (262)
T 3nol_A           31 YQIVHSYPHDTKAFTEGFFYRNGYFYESTGLNG------RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTW  104 (262)
T ss_dssp             EEEEEEEECCTTCEEEEEEEETTEEEEEEEETT------EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEES
T ss_pred             eEEEEEecCCCCcccceEEEECCEEEEECCCCC------CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEe
Confidence            334444454323344566677999999998654      46789999999875444455544445567788999999965


Q ss_pred             CCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcC
Q 016413          237 SKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGG  290 (390)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG  290 (390)
                      .+     ..+.+||       +++.+  .+..++.+..+.+.+.-+++||+.-|
T Consensus       105 ~~-----~~v~v~D-------~~t~~--~~~ti~~~~eG~glt~dg~~L~~SdG  144 (262)
T 3nol_A          105 KN-----GLGFVWN-------IRNLR--QVRSFNYDGEGWGLTHNDQYLIMSDG  144 (262)
T ss_dssp             SS-----SEEEEEE-------TTTCC--EEEEEECSSCCCCEEECSSCEEECCS
T ss_pred             eC-----CEEEEEE-------CccCc--EEEEEECCCCceEEecCCCEEEEECC
Confidence            32     3455565       34433  33333333344466666777888765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.79  E-value=0.031  Score=52.05  Aligned_cols=174  Identities=7%  Similarity=-0.009  Sum_probs=77.9

Q ss_pred             eeeeeccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccCCCCeEECCCCCCcCCCceEEEECCEE
Q 016413           52 VASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLF  131 (390)
Q Consensus        52 ~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~l  131 (390)
                      .+..||..+.+...+......   ..-.+++...+...-.....+..+..+|..+.+-...  +......-..+..++.+
T Consensus       114 ~v~lw~~~~~~~~~~~~~~~~---~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~  188 (401)
T 4aez_A          114 NVYVWNADSGSVSALAETDES---TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT--MAGHQARVGCLSWNRHV  188 (401)
T ss_dssp             EEEEEETTTCCEEEEEECCTT---CCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEEETTE
T ss_pred             eEEEeeCCCCcEeEeeecCCC---CCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE--ecCCCCceEEEEECCCE
Confidence            678888877776554433211   1112222222211111111123566666655443221  11111222233446677


Q ss_pred             EEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-CCEEEEEeceeCCCCCCCCceEEEEECCCCCeE
Q 016413          132 YVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWD  210 (390)
Q Consensus       132 yv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~  210 (390)
                      ++.|+.++      .+..||+.+..-.. ..+... ...-.+++.. ++.+++.|+.+        ..+.+||..+..-.
T Consensus       189 l~~~~~dg------~i~i~d~~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~l~s~~~d--------~~v~iwd~~~~~~~  252 (401)
T 4aez_A          189 LSSGSRSG------AIHHHDVRIANHQI-GTLQGH-SSEVCGLAWRSDGLQLASGGND--------NVVQIWDARSSIPK  252 (401)
T ss_dssp             EEEEETTS------EEEEEETTSSSCEE-EEEECC-SSCEEEEEECTTSSEEEEEETT--------SCEEEEETTCSSEE
T ss_pred             EEEEcCCC------CEEEEecccCccee-eEEcCC-CCCeeEEEEcCCCCEEEEEeCC--------CeEEEccCCCCCcc
Confidence            77887663      58888987433111 111110 1112223332 56677777643        34788998775432


Q ss_pred             e-CCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          211 S-IPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       211 ~-~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      . +...  ...-.+++..  +..+++.||..   ....+..|++
T Consensus       253 ~~~~~~--~~~v~~~~~~p~~~~ll~~~~gs---~d~~i~i~d~  291 (401)
T 4aez_A          253 FTKTNH--NAAVKAVAWCPWQSNLLATGGGT---MDKQIHFWNA  291 (401)
T ss_dssp             EEECCC--SSCCCEEEECTTSTTEEEEECCT---TTCEEEEEET
T ss_pred             EEecCC--cceEEEEEECCCCCCEEEEecCC---CCCEEEEEEC
Confidence            1 1111  1111223332  44677776421   1335667764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.77  E-value=0.021  Score=52.02  Aligned_cols=104  Identities=10%  Similarity=0.091  Sum_probs=58.8

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-C--CEEEEEeceeCCCCCCCCceEEEEEC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-G--RYIYIVSGQYGPQCRGPTSRTFVLDS  204 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~v~~yd~  204 (390)
                      +++.++.|+.++      .+.+||...+++..+..+... ...-.+++.. +  +.+++.|+.+        ..+.+||.
T Consensus        22 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~d--------g~v~iwd~   86 (379)
T 3jrp_A           22 YGKRLATCSSDK------TIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYD--------GKVLIWKE   86 (379)
T ss_dssp             SSSEEEEEETTS------CEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEETT--------SCEEEEEE
T ss_pred             CCCEEEEEECCC------cEEEEecCCCcceeeeEecCC-CCcEEEEEeCCCCCCCEEEEeccC--------CEEEEEEc
Confidence            456777777653      377888877777665544431 1122233332 2  5677777643        34778888


Q ss_pred             CCCCeEeCCCCCCCCCCceEEEE--C--CEEEEEccCCCCCCCCCcceEEe
Q 016413          205 ETRKWDSIPPLPSPRYSPATQLW--R--GRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       205 ~~~~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      .+.+|..+..+.........+.+  +  +.+++.|+.+     ..+..|++
T Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~  132 (379)
T 3jrp_A           87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEF  132 (379)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEEC
T ss_pred             CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC-----CcEEEEec
Confidence            88887766544433222233333  2  5567776653     34666665

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.75  E-value=0.023  Score=51.70  Aligned_cols=140  Identities=15%  Similarity=0.214  Sum_probs=73.2

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +++++++|+.+      ..+.+||+.+.++..+..+... ...-.+++. -++.+++.|+.+        ..+.+||..+
T Consensus        19 ~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d--------g~i~vwd~~~   83 (372)
T 1k8k_C           19 DRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEH-NGQVTGVDWAPDSNRIVTCGTD--------RNAYVWTLKG   83 (372)
T ss_dssp             TSSEEEEECSS------SEEEEEEEETTEEEEEEEEECC-SSCEEEEEEETTTTEEEEEETT--------SCEEEEEEET
T ss_pred             CCCEEEEEeCC------CEEEEEeCCCCcEEeeeeecCC-CCcccEEEEeCCCCEEEEEcCC--------CeEEEEECCC
Confidence            55677777765      3589999998887666554331 112223333 356677777643        3477888888


Q ss_pred             CCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCC--CCCCCceeEEEE-
Q 016413          207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPI--PRGGPHRACFVF-  281 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--p~~~~~~~~~~~-  281 (390)
                      .++.....+.........+.+  ++++++.|+.+     ..+..|++.      ....|......  +....-.+++.. 
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~d~~------~~~~~~~~~~~~~~~~~~i~~~~~~~  152 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS-----RVISICYFE------QENDWWVCKHIKKPIRSTVLSLDWHP  152 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT-----SSEEEEEEE------TTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCC-----CEEEEEEec------CCCcceeeeeeecccCCCeeEEEEcC
Confidence            776554322222222222222  45666666643     356777763      33334333222  111111122222 


Q ss_pred             CCEEEEEcCCCC
Q 016413          282 NDRLFVVGGQEG  293 (390)
Q Consensus       282 ~~~iyv~GG~~~  293 (390)
                      ++++++.|+.++
T Consensus       153 ~~~~l~~~~~dg  164 (372)
T 1k8k_C          153 NSVLLAAGSCDF  164 (372)
T ss_dssp             TSSEEEEEETTS
T ss_pred             CCCEEEEEcCCC
Confidence            566777777654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.67  E-value=0.023  Score=58.06  Aligned_cols=95  Identities=8%  Similarity=0.034  Sum_probs=52.1

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEE--C--CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceE
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--K--NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG  173 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~  173 (390)
                      .+..+|....++..+..+......-..+.+  +  +..++.|+.++      .+.+||+.+++|..+..+... ...-.+
T Consensus        32 ~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~I~vwd~~~~~~~~~~~~~~h-~~~V~~  104 (753)
T 3jro_A           32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKEENGRWSQIAVHAVH-SASVNS  104 (753)
T ss_dssp             EEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS------CEEEEEEETTEEEEEEEECCC-SSCEEE
T ss_pred             cEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC------eEEEEECCCCcccccccccCC-CCCeEE
Confidence            455556554555544333322222222222  2  67788888764      488889888888766554431 122223


Q ss_pred             EEEe-C--CEEEEEeceeCCCCCCCCceEEEEECCCC
Q 016413          174 VVSD-G--RYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (390)
Q Consensus       174 ~~~~-~--~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  207 (390)
                      ++.. +  +.+++.|+.+        ..+..||..+.
T Consensus       105 v~~sp~~~~~~l~sgs~d--------g~I~vwdl~~~  133 (753)
T 3jro_A          105 VQWAPHEYGPLLLVASSD--------GKVSVVEFKEN  133 (753)
T ss_dssp             EEECCGGGCSEEEEEETT--------SEEEEEECCSS
T ss_pred             EEECCCCCCCEEEEEeCC--------CcEEEEEeecC
Confidence            3332 3  5677777643        45778887765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.66  E-value=0.089  Score=46.25  Aligned_cols=99  Identities=14%  Similarity=0.063  Sum_probs=64.2

Q ss_pred             ceEEEEC-CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEE
Q 016413          122 GAAIQIK-NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTF  200 (390)
Q Consensus       122 ~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  200 (390)
                      +.++..+ +.||+..|..+    .+.+.++|+.+.+=...-+++.  .....+++..+++||+..-        ..+.++
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~l~~--~~fgeGi~~~g~~lyv~t~--------~~~~v~   89 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIHKMDD--SYFGEGLTLLNEKLYQVVW--------LKNIGF   89 (266)
T ss_dssp             EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEEECCT--TCCEEEEEEETTEEEEEET--------TCSEEE
T ss_pred             ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEEecCC--CcceEEEEEeCCEEEEEEe--------cCCEEE
Confidence            4555555 79999887543    2569999999988554333332  2345577788999999963        257799


Q ss_pred             EEECCCCCeEeCCCCCCC-CCCceEEEECCEEEEEcc
Q 016413          201 VLDSETRKWDSIPPLPSP-RYSPATQLWRGRLHVMGG  236 (390)
Q Consensus       201 ~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG  236 (390)
                      +||+.+.+  .+...+.+ ..+..++.-++++|+.-|
T Consensus        90 viD~~t~~--v~~~i~~g~~~g~glt~Dg~~l~vs~g  124 (266)
T 2iwa_A           90 IYDRRTLS--NIKNFTHQMKDGWGLATDGKILYGSDG  124 (266)
T ss_dssp             EEETTTTE--EEEEEECCSSSCCEEEECSSSEEEECS
T ss_pred             EEECCCCc--EEEEEECCCCCeEEEEECCCEEEEECC
Confidence            99998753  33323222 334445555678998754

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.65  E-value=0.078  Score=47.77  Aligned_cols=100  Identities=9%  Similarity=0.049  Sum_probs=51.6

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +++.++.|+.++      .+.+||..+.+-...  +... ...-.+++. -+++.++.|+.+        ..+..||..+
T Consensus       133 dg~~l~~g~~dg------~v~i~~~~~~~~~~~--~~~~-~~~v~~~~~spdg~~lasg~~d--------g~i~iwd~~~  195 (321)
T 3ow8_A          133 DSQYLATGTHVG------KVNIFGVESGKKEYS--LDTR-GKFILSIAYSPDGKYLASGAID--------GIINIFDIAT  195 (321)
T ss_dssp             TSSEEEEECTTS------EEEEEETTTCSEEEE--EECS-SSCEEEEEECTTSSEEEEEETT--------SCEEEEETTT
T ss_pred             CCCEEEEEcCCC------cEEEEEcCCCceeEE--ecCC-CceEEEEEECCCCCEEEEEcCC--------CeEEEEECCC
Confidence            566777777653      478888876653221  1111 111222333 356677777643        3477889877


Q ss_pred             CCeEeCCCCCCCCCC-ceEEE-ECCEEEEEccCCCCCCCCCcceEEe
Q 016413          207 RKWDSIPPLPSPRYS-PATQL-WRGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      .+-..  .+...... .+++. -++++++.|+.+     ..+..|++
T Consensus       196 ~~~~~--~~~~h~~~v~~l~~spd~~~l~s~s~d-----g~i~iwd~  235 (321)
T 3ow8_A          196 GKLLH--TLEGHAMPIRSLTFSPDSQLLVTASDD-----GYIKIYDV  235 (321)
T ss_dssp             TEEEE--EECCCSSCCCEEEECTTSCEEEEECTT-----SCEEEEET
T ss_pred             CcEEE--EEcccCCceeEEEEcCCCCEEEEEcCC-----CeEEEEEC
Confidence            64321  11111111 12222 256677777654     35677774

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.64  E-value=0.068  Score=46.79  Aligned_cols=96  Identities=14%  Similarity=0.094  Sum_probs=67.2

Q ss_pred             ceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEE
Q 016413          122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFV  201 (390)
Q Consensus       122 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~  201 (390)
                      .++...++.||+..|.++      .+.++|+++.+=...- ++.  .-+..+++..+++||+....        .+.+++
T Consensus        58 qGL~~~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~-l~~--~~FgeGit~~g~~Ly~ltw~--------~~~v~V  120 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQG------TLRQLSLESAQPVWME-RLG--NIFAEGLASDGERLYQLTWT--------EGLLFT  120 (268)
T ss_dssp             EEEEEETTEEEEEETTTT------EEEECCSSCSSCSEEE-ECT--TCCEEEEEECSSCEEEEESS--------SCEEEE
T ss_pred             ceEEEECCEEEEEcCCCC------EEEEEECCCCcEEeEE-CCC--CcceeEEEEeCCEEEEEEcc--------CCEEEE
Confidence            455566899999999764      2889999988754332 443  23456688889999998542        577999


Q ss_pred             EECCCCCeEeCCCCCCCCCCceEEEECCEEEEEcc
Q 016413          202 LDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGG  236 (390)
Q Consensus       202 yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG  236 (390)
                      ||+++.+=  +...+.+..+.+++..+++||+.-|
T Consensus       121 ~D~~Tl~~--~~ti~~~~eGwGLt~Dg~~L~vSdG  153 (268)
T 3nok_A          121 WSGMPPQR--ERTTRYSGEGWGLCYWNGKLVRSDG  153 (268)
T ss_dssp             EETTTTEE--EEEEECSSCCCCEEEETTEEEEECS
T ss_pred             EECCcCcE--EEEEeCCCceeEEecCCCEEEEECC
Confidence            99987643  3333333445677778889999965

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.54  E-value=0.31  Score=45.93  Aligned_cols=145  Identities=12%  Similarity=0.131  Sum_probs=73.0

Q ss_pred             eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCC-ceEEE-ECCEEEEEccCCCCCCCCCcceEEeeee
Q 016413          177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYS-PATQL-WRGRLHVMGGSKENRHTPGLEHWSIAVK  254 (390)
Q Consensus       177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~  254 (390)
                      .++.+++.|+.+        ..+..||..+.+-..  .+...... .+++. -++..++.|+.+     ..+..|++   
T Consensus       278 ~~~~~l~~~~~d--------~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~---  339 (464)
T 3v7d_B          278 GHGNIVVSGSYD--------NTLIVWDVAQMKCLY--ILSGHTDRIYSTIYDHERKRCISASMD-----TTIRIWDL---  339 (464)
T ss_dssp             EETTEEEEEETT--------SCEEEEETTTTEEEE--EECCCSSCEEEEEEETTTTEEEEEETT-----SCEEEEET---
T ss_pred             CCCCEEEEEeCC--------CeEEEEECCCCcEEE--EecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEEC---
Confidence            345566666543        347888987654322  11111111 12222 245566666653     35777774   


Q ss_pred             ccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCC
Q 016413          255 DGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMP  333 (390)
Q Consensus       255 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~  333 (390)
                          .+.+  .+..+........++..++..++.|+.++.                      +.+|| .+..-.......
T Consensus       340 ----~~~~--~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~----------------------v~vwd~~~~~~~~~~~~~  391 (464)
T 3v7d_B          340 ----ENGE--LMYTLQGHTALVGLLRLSDKFLVSAAADGS----------------------IRGWDANDYSRKFSYHHT  391 (464)
T ss_dssp             ----TTTE--EEEEECCCSSCEEEEEECSSEEEEEETTSE----------------------EEEEETTTCCEEEEEECT
T ss_pred             ----CCCc--EEEEEeCCCCcEEEEEEcCCEEEEEeCCCc----------------------EEEEECCCCceeeeecCC
Confidence                2222  222222222223455667788888887653                      77887 443211111111


Q ss_pred             CCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCcccee
Q 016413          334 KPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVII  383 (390)
Q Consensus       334 ~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~  383 (390)
                      .  . ....+...++++++.|+ ++            .+.+||+++.+-.
T Consensus       392 ~--~-~~~~~~~~~~~~l~~~~-dg------------~i~iwd~~~g~~~  425 (464)
T 3v7d_B          392 N--L-SAITTFYVSDNILVSGS-EN------------QFNIYNLRSGKLV  425 (464)
T ss_dssp             T--C-CCEEEEEECSSEEEEEE-TT------------EEEEEETTTCCEE
T ss_pred             C--C-ccEEEEEeCCCEEEEec-CC------------eEEEEECCCCcEE
Confidence            1  1 12233566777777776 21            3788888776543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.055  Score=49.99  Aligned_cols=67  Identities=9%  Similarity=0.062  Sum_probs=34.5

Q ss_pred             EEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEE
Q 016413          125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLD  203 (390)
Q Consensus       125 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd  203 (390)
                      ....+..+++|+.++      .+..||+.+.+-...  +... ...-.+++. -++.+++.|+.+        ..+.+||
T Consensus       213 ~~~~~~~~~~~~~~g------~i~~~d~~~~~~~~~--~~~~-~~~i~~~~~~~~~~~l~~~~~d--------~~i~i~d  275 (425)
T 1r5m_A          213 EWVDDDKFVIPGPKG------AIFVYQITEKTPTGK--LIGH-HGPISVLEFNDTNKLLLSASDD--------GTLRIWH  275 (425)
T ss_dssp             EEEETTEEEEECGGG------CEEEEETTCSSCSEE--ECCC-SSCEEEEEEETTTTEEEEEETT--------SCEEEEC
T ss_pred             EEcCCCEEEEEcCCC------eEEEEEcCCCceeee--eccC-CCceEEEEECCCCCEEEEEcCC--------CEEEEEE
Confidence            333444566776553      488999887643211  1111 111222333 355566666533        3477888


Q ss_pred             CCCCC
Q 016413          204 SETRK  208 (390)
Q Consensus       204 ~~~~~  208 (390)
                      ..+.+
T Consensus       276 ~~~~~  280 (425)
T 1r5m_A          276 GGNGN  280 (425)
T ss_dssp             SSSBS
T ss_pred             CCCCc
Confidence            76643

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=96.40  E-value=0.048  Score=49.68  Aligned_cols=185  Identities=9%  Similarity=0.140  Sum_probs=92.7

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      ++++++.||.++      .+.++|..+++|.....+...-...-.+++. -++.+++.|+.++        .+.+||..+
T Consensus        27 ~g~~las~~~D~------~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~--------~v~iw~~~~   92 (345)
T 3fm0_A           27 AGTLLASCGGDR------RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA--------TTCIWKKNQ   92 (345)
T ss_dssp             TSSCEEEEETTS------CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS--------CEEEEEECC
T ss_pred             CCCEEEEEcCCC------eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC--------cEEEEEccC
Confidence            567888888764      3778888888875432221111122223333 2566777777543        356677766


Q ss_pred             CCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEE--EC
Q 016413          207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFV--FN  282 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~--~~  282 (390)
                      ..++.+..+.........+.+  ++++++.|+.+     ..+..|++.      ....+..+..+.........+.  -+
T Consensus        93 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D-----~~v~iwd~~------~~~~~~~~~~~~~h~~~v~~~~~~p~  161 (345)
T 3fm0_A           93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD-----KSVWVWEVD------EEDEYECVSVLNSHTQDVKHVVWHPS  161 (345)
T ss_dssp             C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEEEC------TTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred             CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECC-----CeEEEEECC------CCCCeEEEEEecCcCCCeEEEEECCC
Confidence            666554433322222222222  56677777654     457788862      2233333322221111112222  25


Q ss_pred             CEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCC
Q 016413          283 DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEK  359 (390)
Q Consensus       283 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~  359 (390)
                      +++++.|+.++.                      |..|| .+..|..+..+..........+...+++.++.|+.++.
T Consensus       162 ~~~l~s~s~d~~----------------------i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~  217 (345)
T 3fm0_A          162 QELLASASYDDT----------------------VKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT  217 (345)
T ss_dssp             SSCEEEEETTSC----------------------EEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCEEEEEeCCCc----------------------EEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe
Confidence            667777776643                      77787 66666644333322222211112235667777776543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=96.39  E-value=0.11  Score=46.06  Aligned_cols=100  Identities=12%  Similarity=0.128  Sum_probs=51.5

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      ++++++.|+.++      .+.+||..+.+-...  +... ...-.+++. -++.+++.|+.+        ..+..||+.+
T Consensus        76 ~~~~l~s~~~d~------~i~vwd~~~~~~~~~--~~~~-~~~v~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~  138 (312)
T 4ery_A           76 DSNLLVSASDDK------TLKIWDVSSGKCLKT--LKGH-SNYVFCCNFNPQSNLIVSGSFD--------ESVRIWDVKT  138 (312)
T ss_dssp             TSSEEEEEETTS------EEEEEETTTCCEEEE--EECC-SSCEEEEEECSSSSEEEEEETT--------SCEEEEETTT
T ss_pred             CCCEEEEECCCC------EEEEEECCCCcEEEE--EcCC-CCCEEEEEEcCCCCEEEEEeCC--------CcEEEEECCC
Confidence            567778887663      588899887653221  1110 011112222 255667777643        3477889877


Q ss_pred             CCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      .+-..  .++........+.+  ++.+++.|+.+     ..+..|++
T Consensus       139 ~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~  178 (312)
T 4ery_A          139 GKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSYD-----GLCRIWDT  178 (312)
T ss_dssp             CCEEE--EECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEET
T ss_pred             CEEEE--EecCCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEEC
Confidence            54322  12211111222222  55677777654     35677774

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.36  E-value=0.36  Score=41.53  Aligned_cols=90  Identities=13%  Similarity=0.048  Sum_probs=49.7

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-CCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +++|||... +      ..+.+||+.++....+.....   ..-.+++.. +++||+....        ...+.+||..+
T Consensus        77 ~g~l~v~~~-~------~~i~~~d~~~~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~~--------~~~i~~~~~~~  138 (270)
T 1rwi_B           77 AGTVYVTDF-N------NRVVTLAAGSNNQTVLPFDGL---NYPEGLAVDTQGAVYVADRG--------NNRVVKLAAGS  138 (270)
T ss_dssp             TCCEEEEET-T------TEEEEECTTCSCCEECCCCSC---SSEEEEEECTTCCEEEEEGG--------GTEEEEECTTC
T ss_pred             CCCEEEEcC-C------CEEEEEeCCCceEeeeecCCc---CCCcceEECCCCCEEEEECC--------CCEEEEEECCC
Confidence            467888765 2      358999998876544422111   122344443 6789987532        34688888776


Q ss_pred             CCeEeCCCCCCCCCCceEEEE-CCEEEEEcc
Q 016413          207 RKWDSIPPLPSPRYSPATQLW-RGRLHVMGG  236 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG  236 (390)
                      ........... ..-..++.. +++||+...
T Consensus       139 ~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~  168 (270)
T 1rwi_B          139 KTQTVLPFTGL-NDPDGVAVDNSGNVYVTDT  168 (270)
T ss_dssp             CSCEECCCCSC-CSCCCEEECTTCCEEEEEG
T ss_pred             ceeEeeccccC-CCceeEEEeCCCCEEEEEC
Confidence            65544322111 112233333 577888754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.35  E-value=0.13  Score=45.17  Aligned_cols=168  Identities=13%  Similarity=0.034  Sum_probs=92.8

Q ss_pred             eeecCCCCCCCCCcceEEEEeC-CEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEc
Q 016413          157 WVDRFDMPKDMAHSHLGVVSDG-RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMG  235 (390)
Q Consensus       157 W~~~~~l~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G  235 (390)
                      .+.+...|.+...+-++++..+ +.||+..|..+      .+.+.++|+.+.+=...-+++.......++..+++||+..
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~------~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t   82 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYG------RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVV   82 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTT------TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEE
T ss_pred             ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCC------CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEE
Confidence            3344444443222335666665 89999877322      4679999999987544334444334456777899999996


Q ss_pred             cCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCC-CCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceec
Q 016413          236 GSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRG-GPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVY  314 (390)
Q Consensus       236 G~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  314 (390)
                      -.     .+.+.++|       +.  +.+.+..+|.+ ..+.+.+.-++++|+.-|.                       
T Consensus        83 ~~-----~~~v~viD-------~~--t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs-----------------------  125 (266)
T 2iwa_A           83 WL-----KNIGFIYD-------RR--TLSNIKNFTHQMKDGWGLATDGKILYGSDGT-----------------------  125 (266)
T ss_dssp             TT-----CSEEEEEE-------TT--TTEEEEEEECCSSSCCEEEECSSSEEEECSS-----------------------
T ss_pred             ec-----CCEEEEEE-------CC--CCcEEEEEECCCCCeEEEEECCCEEEEECCC-----------------------
Confidence            43     23455555       23  33333333322 2233455556779887652                       


Q ss_pred             CcEEeeC-CCCC-eEECC--CCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCcc
Q 016413          315 GDVYMLD-DEMK-WKVLP--PMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSL  380 (390)
Q Consensus       315 ~~v~~yd-~~~~-W~~~~--~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~  380 (390)
                      +.+.++| .+.+ -..++  ..+.|..... .+...++++|+--..+            ++|.+.|+++.
T Consensus       126 ~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n-ele~~dg~lyvn~~~~------------~~V~vID~~tg  182 (266)
T 2iwa_A          126 SILYEIDPHTFKLIKKHNVKYNGHRVIRLN-ELEYINGEVWANIWQT------------DCIARISAKDG  182 (266)
T ss_dssp             SEEEEECTTTCCEEEEEECEETTEECCCEE-EEEEETTEEEEEETTS------------SEEEEEETTTC
T ss_pred             CeEEEEECCCCcEEEEEEECCCCcccccce-eEEEECCEEEEecCCC------------CeEEEEECCCC
Confidence            2499999 4432 22222  2222222211 2234488888764321            25778888765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=96.33  E-value=0.32  Score=43.59  Aligned_cols=97  Identities=15%  Similarity=0.050  Sum_probs=49.7

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEE-C-CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCC------CC
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-K-NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM------AH  169 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~-~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~------~r  169 (390)
                      .++.+|..+.+-...-+.  ...-..++.. + +++|+.+..+      ..+.++|+.+.+-...-+++...      +.
T Consensus        70 ~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~  141 (353)
T 3vgz_A           70 VVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNTVN------SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPL  141 (353)
T ss_dssp             EEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEETTT------TEEEEEETTTCCEEEEEESCCCCCCSSCCCC
T ss_pred             cEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEecCC------CEEEEEeCCCCeeEEEEecCCCccccccCCC
Confidence            577777766543221111  1112333333 3 4588876643      36999999887643222221110      01


Q ss_pred             cceEEEE--eCCEEEEEeceeCCCCCCCCceEEEEECCCCCe
Q 016413          170 SHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKW  209 (390)
Q Consensus       170 ~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W  209 (390)
                      .-..++.  .++.+|+.+..       ....++++|+.+.+-
T Consensus       142 ~~~~~~~s~dg~~l~~~~~~-------~~~~i~~~d~~~~~~  176 (353)
T 3vgz_A          142 QPRELVADDATNTVYISGIG-------KESVIWVVDGGNIKL  176 (353)
T ss_dssp             EEEEEEEETTTTEEEEEEES-------SSCEEEEEETTTTEE
T ss_pred             CCceEEECCCCCEEEEEecC-------CCceEEEEcCCCCce
Confidence            1223333  34667777631       135689999987643

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.31  E-value=0.067  Score=50.33  Aligned_cols=139  Identities=10%  Similarity=0.065  Sum_probs=72.4

Q ss_pred             EEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEE
Q 016413          124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD  203 (390)
Q Consensus       124 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd  203 (390)
                      +...++..++.|+.++      .+.+||..+.+-...  +..  ..........++.+++.|+.+        ..+.+||
T Consensus       138 ~~~~d~~~l~~g~~dg------~i~iwd~~~~~~~~~--~~~--h~~~v~~l~~~~~~l~sg~~d--------g~i~vwd  199 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDN------TIKIWDKNTLECKRI--LTG--HTGSVLCLQYDERVIITGSSD--------STVRVWD  199 (435)
T ss_dssp             EEECCSSEEEEEESSS------CEEEEESSSCCEEEE--ECC--CSSCEEEEECCSSEEEEEETT--------SCEEEEE
T ss_pred             EEEECCCEEEEEeCCC------eEEEEeCCCCeEEEE--EcC--CCCcEEEEEECCCEEEEEcCC--------CeEEEEE
Confidence            3445778888888764      488899877654322  221  112223333477788888754        3477888


Q ss_pred             CCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECC
Q 016413          204 SETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND  283 (390)
Q Consensus       204 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~  283 (390)
                      ..+.+-..  .+.........+..++.+++.|+.+     ..+..|++.      ..........+........++..++
T Consensus       200 ~~~~~~~~--~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~------~~~~~~~~~~~~~~~~~v~~~~~~~  266 (435)
T 1p22_A          200 VNTGEMLN--TLIHHCEAVLHLRFNNGMMVTCSKD-----RSIAVWDMA------SPTDITLRRVLVGHRAAVNVVDFDD  266 (435)
T ss_dssp             SSSCCEEE--EECCCCSCEEEEECCTTEEEEEETT-----SCEEEEECS------SSSCCEEEEEECCCSSCEEEEEEET
T ss_pred             CCCCcEEE--EEcCCCCcEEEEEEcCCEEEEeeCC-----CcEEEEeCC------CCCCceeeeEecCCCCcEEEEEeCC
Confidence            87765322  1222222223334456667777654     357777752      1122211111111111223444577


Q ss_pred             EEEEEcCCCC
Q 016413          284 RLFVVGGQEG  293 (390)
Q Consensus       284 ~iyv~GG~~~  293 (390)
                      ..++.|+.++
T Consensus       267 ~~l~s~~~dg  276 (435)
T 1p22_A          267 KYIVSASGDR  276 (435)
T ss_dssp             TEEEEEETTS
T ss_pred             CEEEEEeCCC
Confidence            7777777654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.29  E-value=0.6  Score=42.11  Aligned_cols=202  Identities=13%  Similarity=0.107  Sum_probs=102.3

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEE-CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS  176 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~  176 (390)
                      .++.-.-...+|+.+.. +....-.++... .+.+|++|- .      ..+++-.-...+|+.+............+++.
T Consensus        16 ~~~~s~d~g~~W~~~~~-~~~~~~~~v~~~~~~~~~~~G~-~------g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~   87 (327)
T 2xbg_A           16 GSAIPALDYNPWEAIQL-PTTATILDMSFIDRHHGWLVGV-N------ATLMETRDGGQTWEPRTLVLDHSDYRFNSVSF   87 (327)
T ss_dssp             --CCCBCSSCCEEEEEC-SCSSCEEEEEESSSSCEEEEET-T------TEEEEESSTTSSCEECCCCCSCCCCEEEEEEE
T ss_pred             ceeecCCCCCCceEeec-CCCCcEEEEEECCCCcEEEEcC-C------CeEEEeCCCCCCCeECCCCCCCCCccEEEEEe
Confidence            45555556779988753 322222333332 457888653 2      12555444467899875321111223445556


Q ss_pred             eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCC-CCCCCceEE-EECCEEEEEccCCCCCCCCCcceEEeeee
Q 016413          177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP-SPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWSIAVK  254 (390)
Q Consensus       177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  254 (390)
                      .++.+|++|-         ...+++-+-.-.+|+.+.... .+.....++ .-++.+|+.|...        ..|...  
T Consensus        88 ~~~~~~~~g~---------~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g--------~v~~S~--  148 (327)
T 2xbg_A           88 QGNEGWIVGE---------PPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVG--------AIYRTK--  148 (327)
T ss_dssp             ETTEEEEEEE---------TTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTC--------CEEEES--
T ss_pred             cCCeEEEEEC---------CCeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCc--------cEEEEc--
Confidence            6788998762         124555444457899987431 222223333 3467888876421        122210  


Q ss_pred             ccccccCCeEEccCCCCCCCceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-C-CCCeEECCC
Q 016413          255 DGKALEKAWRTEIPIPRGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-D-EMKWKVLPP  331 (390)
Q Consensus       255 ~~~~~~~~W~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~-~~~W~~~~~  331 (390)
                         ....+|+.+....... .++++.. +++++++|- .+                      .+++-+ . ...|+.+..
T Consensus       149 ---DgG~tW~~~~~~~~~~-~~~~~~~~~~~~~~~g~-~G----------------------~~~~S~d~gG~tW~~~~~  201 (327)
T 2xbg_A          149 ---DSGKNWQALVQEAIGV-MRNLNRSPSGEYVAVSS-RG----------------------SFYSTWEPGQTAWEPHNR  201 (327)
T ss_dssp             ---STTSSEEEEECSCCCC-EEEEEECTTSCEEEEET-TS----------------------SEEEEECTTCSSCEEEEC
T ss_pred             ---CCCCCCEEeecCCCcc-eEEEEEcCCCcEEEEEC-CC----------------------cEEEEeCCCCCceeECCC
Confidence               2456899875432222 2233333 456666553 22                      155554 4 579998853


Q ss_pred             CCCCCCcceeEEEEECCEEEEEcC
Q 016413          332 MPKPNSHIECAWVIVNNSIIITGG  355 (390)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~l~v~GG  355 (390)
                       +.+...... ++.-++.+|+.+.
T Consensus       202 -~~~~~~~~~-~~~~~g~~~~~~~  223 (327)
T 2xbg_A          202 -TTSRRLHNM-GFTPDGRLWMIVN  223 (327)
T ss_dssp             -CSSSCEEEE-EECTTSCEEEEET
T ss_pred             -CCCCcccee-EECCCCCEEEEeC
Confidence             222222211 1223567777653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=96.24  E-value=0.21  Score=43.89  Aligned_cols=55  Identities=18%  Similarity=0.143  Sum_probs=27.9

Q ss_pred             EEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeecc
Q 016413          317 VYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHY  386 (390)
Q Consensus       317 v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~  386 (390)
                      |.+|| .+.+....-..+  ...........+++ ++.|+.++            .+.+||+.++++....
T Consensus       248 v~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~-~~~~~~dg------------~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          248 VRIWSKENGSLKQVITLP--AISIWSVDCMSNGD-IIVGSSDN------------LVRIFSQEKSRWASED  303 (313)
T ss_dssp             EEEECTTTCCEEEEEECS--SSCEEEEEECTTSC-EEEEETTS------------CEEEEESCGGGCCC--
T ss_pred             EEEEECCCCceeEEEecc--CceEEEEEEccCCC-EEEEeCCC------------cEEEEeCCCCceeehh
Confidence            88888 554432221122  11121211223556 45566543            3889999988876543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=96.23  E-value=0.47  Score=41.89  Aligned_cols=65  Identities=11%  Similarity=0.184  Sum_probs=36.7

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      ++.+++.|+.++      .+.+||+.+.+-..  .++.. ...-.+++. -++.+++.|+.+        ..+..||..+
T Consensus       118 ~~~~l~s~~~d~------~i~iwd~~~~~~~~--~~~~~-~~~v~~~~~~~~~~~l~~~~~d--------~~i~~wd~~~  180 (312)
T 4ery_A          118 QSNLIVSGSFDE------SVRIWDVKTGKCLK--TLPAH-SDPVSAVHFNRDGSLIVSSSYD--------GLCRIWDTAS  180 (312)
T ss_dssp             SSSEEEEEETTS------CEEEEETTTCCEEE--EECCC-SSCEEEEEECTTSSEEEEEETT--------SCEEEEETTT
T ss_pred             CCCEEEEEeCCC------cEEEEECCCCEEEE--EecCC-CCcEEEEEEcCCCCEEEEEeCC--------CcEEEEECCC
Confidence            456777787764      48889988765322  12211 011122222 356677777643        3477889877


Q ss_pred             CCe
Q 016413          207 RKW  209 (390)
Q Consensus       207 ~~W  209 (390)
                      .+-
T Consensus       181 ~~~  183 (312)
T 4ery_A          181 GQC  183 (312)
T ss_dssp             CCE
T ss_pred             Cce
Confidence            654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=96.20  E-value=0.094  Score=48.94  Aligned_cols=97  Identities=12%  Similarity=0.034  Sum_probs=52.5

Q ss_pred             cccccccCCCCeEECCCCCC---cCCCceEEEE--CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcce
Q 016413           98 TFADLPAPDLEWEQMPSAPV---PRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHL  172 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~---~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~  172 (390)
                      .+..+|..+.+.....+...   ....-..+.+  ++++|+.++.+      ..+.+||+.+.+-...-....   ..-.
T Consensus       145 ~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~~~~---~~~~  215 (433)
T 3bws_A          145 GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVDLTG---KWSK  215 (433)
T ss_dssp             SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEECSS---SSEE
T ss_pred             eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEcCCC---CCee
Confidence            47777777666544332211   1111112233  67888888755      358999988765432211111   1122


Q ss_pred             EEEE--eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEe
Q 016413          173 GVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDS  211 (390)
Q Consensus       173 ~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~  211 (390)
                      +++.  .+..+|+.++.        ...+.+||+.+.+...
T Consensus       216 ~~~~~~~~~~l~~~~~~--------~~~i~~~d~~~~~~~~  248 (433)
T 3bws_A          216 ILLYDPIRDLVYCSNWI--------SEDISVIDRKTKLEIR  248 (433)
T ss_dssp             EEEEETTTTEEEEEETT--------TTEEEEEETTTTEEEE
T ss_pred             EEEEcCCCCEEEEEecC--------CCcEEEEECCCCcEEE
Confidence            3333  25567777642        3468899998776543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.19  E-value=0.024  Score=52.26  Aligned_cols=98  Identities=15%  Similarity=0.237  Sum_probs=52.7

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE--eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +.+|+.|+.+      ..+.++|+.+++-...-....    .-.+++.  .+..||+.++.        -..+.+||+.+
T Consensus         2 ~~l~vs~~~d------~~v~v~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~--------d~~i~v~d~~~   63 (391)
T 1l0q_A            2 TFAYIANSES------DNISVIDVTSNKVTATIPVGS----NPMGAVISPDGTKVYVANAH--------SNDVSIIDTAT   63 (391)
T ss_dssp             EEEEEEETTT------TEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEEGG--------GTEEEEEETTT
T ss_pred             CEEEEEcCCC------CEEEEEECCCCeEEEEeecCC----CcceEEECCCCCEEEEECCC--------CCeEEEEECCC
Confidence            4678887765      358999998876543222221    1223333  24467787753        34688899987


Q ss_pred             CCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      .+-...-+..  ..-.+++..  ++.||+.+...     ..+.+|++
T Consensus        64 ~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~-----~~v~v~d~  103 (391)
T 1l0q_A           64 NNVIATVPAG--SSPQGVAVSPDGKQVYVTNMAS-----STLSVIDT  103 (391)
T ss_dssp             TEEEEEEECS--SSEEEEEECTTSSEEEEEETTT-----TEEEEEET
T ss_pred             CeEEEEEECC--CCccceEECCCCCEEEEEECCC-----CEEEEEEC
Confidence            7543322222  222223322  34566665432     34666664

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.19  E-value=0.14  Score=46.74  Aligned_cols=134  Identities=12%  Similarity=0.017  Sum_probs=63.0

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEE--CCEEEEEecCCCCCCCCCeEEEEeCCCCc-eeecCCCCCCCCCcceEE
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNK-WVDRFDMPKDMAHSHLGV  174 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~l~~~~~r~~~~~  174 (390)
                      .+..++..+..|+.+..+......-..+.+  ++++++.|+.++      .+.+||+.+.. |.....+... ...-.++
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~------~v~vwd~~~~~~~~~~~~~~~~-~~~v~~~  106 (377)
T 3dwl_C           34 QVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR------NAYVYEKRPDGTWKQTLVLLRL-NRAATFV  106 (377)
T ss_dssp             CBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTS------SEEEC------CCCCEEECCCC-SSCEEEE
T ss_pred             EEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCC------eEEEEEcCCCCceeeeeEeccc-CCceEEE
Confidence            566777777777766655433222222222  457777887663      48888888776 5544333221 1112222


Q ss_pred             EE-eCCEEEEEeceeCCCCCCCCceEEEEECCCCC-eEeCCCCCC-CCCC-ceEEEE-CCEEEEEccCCCCCCCCCcceE
Q 016413          175 VS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK-WDSIPPLPS-PRYS-PATQLW-RGRLHVMGGSKENRHTPGLEHW  249 (390)
Q Consensus       175 ~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~p~-~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~  249 (390)
                      +. -++++++.|+.+        ..+.+||..+.. |..+..+.. .... .+++.. ++++++.|+.+     ..+..|
T Consensus       107 ~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----~~i~iw  173 (377)
T 3dwl_C          107 RWSPNEDKFAVGSGA--------RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD-----RKAYVL  173 (377)
T ss_dssp             ECCTTSSCCEEEESS--------SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS-----SCEEEE
T ss_pred             EECCCCCEEEEEecC--------CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC-----CEEEEE
Confidence            22 256677777643        336677776654 433332222 1111 122222 45677777654     356777


Q ss_pred             Ee
Q 016413          250 SI  251 (390)
Q Consensus       250 ~~  251 (390)
                      ++
T Consensus       174 d~  175 (377)
T 3dwl_C          174 SA  175 (377)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=96.08  E-value=0.1  Score=48.76  Aligned_cols=194  Identities=7%  Similarity=-0.007  Sum_probs=87.4

Q ss_pred             ccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCcccc-ccceEEEecCCCchhHHHhhhcccccccCCCCeE
Q 016413           32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDR-QRESVAVIDKKGQDAERFLSATFADLPAPDLEWE  110 (390)
Q Consensus        32 ~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~  110 (390)
                      ++.+++.++. ++       .+..||+.+.+.............. .-.+++...+...-........+..+|..+.+-.
T Consensus       133 ~~~~~~~~~~-~~-------~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~  204 (433)
T 3bws_A          133 NTRLAIPLLE-DE-------GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK  204 (433)
T ss_dssp             SSEEEEEBTT-SS-------SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred             CCeEEEEeCC-CC-------eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence            5677777765 44       5788898877765533321100000 1111222111111011112236677776654432


Q ss_pred             ECCCCCCcCCCceEEEE--CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-CCEEEEEece
Q 016413          111 QMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQ  187 (390)
Q Consensus       111 ~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~~~iyv~GG~  187 (390)
                      ..-... ...-.+++..  +..+|+.++.+      ..+.+||+.+.+....-...    ..-.+++.. +++.+++++.
T Consensus       205 ~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~g~~l~~~~~  273 (433)
T 3bws_A          205 ATVDLT-GKWSKILLYDPIRDLVYCSNWIS------EDISVIDRKTKLEIRKTDKI----GLPRGLLLSKDGKELYIAQF  273 (433)
T ss_dssp             EEEECS-SSSEEEEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEECCCC----SEEEEEEECTTSSEEEEEEE
T ss_pred             EEEcCC-CCCeeEEEEcCCCCEEEEEecCC------CcEEEEECCCCcEEEEecCC----CCceEEEEcCCCCEEEEEEC
Confidence            211111 1111222333  34677776554      25899999887654432221    112233332 4544445544


Q ss_pred             eCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          188 YGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       188 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      ........-..+.+||+.+.+-......+.  ....++..  ++.+|+.++.+     ..+..|++
T Consensus       274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~-----~~v~v~d~  332 (433)
T 3bws_A          274 SASNQESGGGRLGIYSMDKEKLIDTIGPPG--NKRHIVSGNTENKIYVSDMCC-----SKIEVYDL  332 (433)
T ss_dssp             ESCTTCSCCEEEEEEETTTTEEEEEEEEEE--CEEEEEECSSTTEEEEEETTT-----TEEEEEET
T ss_pred             CCCccccCCCeEEEEECCCCcEEeeccCCC--CcceEEECCCCCEEEEEecCC-----CEEEEEEC
Confidence            332210124578999998765332211111  11112222  34688876543     34666663

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.04  E-value=0.037  Score=56.52  Aligned_cols=104  Identities=10%  Similarity=0.093  Sum_probs=60.5

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eC--CEEEEEeceeCCCCCCCCceEEEEEC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DG--RYIYIVSGQYGPQCRGPTSRTFVLDS  204 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~v~~yd~  204 (390)
                      +++.++.|+.++      .+.+||..++++..+..+... ...-.+++. .+  +.+++.|+.+        ..+.+||.
T Consensus        20 dg~~latg~~dg------~I~vwd~~~~~~~~~~~l~~h-~~~V~~l~~s~~~~~~~l~s~s~D--------g~I~vwd~   84 (753)
T 3jro_A           20 YGKRLATCSSDK------TIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYD--------GKVLIWKE   84 (753)
T ss_dssp             SSCCEEEEETTT------EEEEEEEETTEEEEEEEECCC-SSCEEEEEECCTTSCSEEEEEETT--------SCEEEEEE
T ss_pred             CCCeEEEEECCC------cEEEEecCCCCCccceeccCC-cCceEEEEecCCCCCCEEEEEeCC--------CeEEEEEC
Confidence            456777777653      488888877777766555431 112223333 23  6677777654        34778888


Q ss_pred             CCCCeEeCCCCCCCCCCceEEEE--C--CEEEEEccCCCCCCCCCcceEEe
Q 016413          205 ETRKWDSIPPLPSPRYSPATQLW--R--GRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       205 ~~~~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      .+..|..+..+.........+.+  +  +.+++.|+.+     ..+..|++
T Consensus        85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-----g~I~vwdl  130 (753)
T 3jro_A           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEF  130 (753)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEEC
T ss_pred             CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC-----CcEEEEEe
Confidence            88877666544333333333333  2  5677777754     34666765

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.03  E-value=0.013  Score=53.69  Aligned_cols=140  Identities=13%  Similarity=0.162  Sum_probs=65.9

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      ++++++.|+.++      .+.+||+.++.|..+..+.... ..-.+++. -++.+++.|+.+        ..+.+||..+
T Consensus        22 ~g~~l~~~~~d~------~i~iw~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~d--------~~v~vwd~~~   86 (377)
T 3dwl_C           22 QRTEFVTTTATN------QVELYEQDGNGWKHARTFSDHD-KIVTCVDWAPKSNRIVTCSQD--------RNAYVYEKRP   86 (377)
T ss_dssp             SSSEEECCCSSS------CBCEEEEETTEEEECCCBCCCS-SCEEEEEECTTTCCEEEEETT--------SSEEEC----
T ss_pred             CCCEEEEecCCC------EEEEEEccCCceEEEEEEecCC-ceEEEEEEeCCCCEEEEEeCC--------CeEEEEEcCC
Confidence            566777777653      4777888888888777665421 12223333 256677777643        3477788877


Q ss_pred             CC-eEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCC--CCCceeEEEE
Q 016413          207 RK-WDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPR--GGPHRACFVF  281 (390)
Q Consensus       207 ~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~--~~~~~~~~~~  281 (390)
                      .. |.....+.........+.+  ++++++.|+.+     ..+..|++.      ....|.....+..  ...-.+++..
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~------~~~~~~~~~~~~~~h~~~v~~~~~~  155 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGA-----RVISVCYFE------QENDWWVSKHLKRPLRSTILSLDWH  155 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESS-----SCEEECCC-----------CCCCEEECSSCCSCEEEEEEC
T ss_pred             CCceeeeeEecccCCceEEEEECCCCCEEEEEecC-----CeEEEEEEC------CcccceeeeEeecccCCCeEEEEEc
Confidence            65 4433322222222222222  45666666653     345666652      2222333322221  1111122222


Q ss_pred             -CCEEEEEcCCCC
Q 016413          282 -NDRLFVVGGQEG  293 (390)
Q Consensus       282 -~~~iyv~GG~~~  293 (390)
                       ++++++.|+.++
T Consensus       156 ~~~~~l~~~~~d~  168 (377)
T 3dwl_C          156 PNNVLLAAGCADR  168 (377)
T ss_dssp             TTSSEEEEEESSS
T ss_pred             CCCCEEEEEeCCC
Confidence             566777887664

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.99  E-value=0.59  Score=42.18  Aligned_cols=202  Identities=10%  Similarity=0.076  Sum_probs=100.6

Q ss_pred             ccccccCCCCeEECCCC-CCcC-CCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCC-CCCCCcceEEE
Q 016413           99 FADLPAPDLEWEQMPSA-PVPR-LDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP-KDMAHSHLGVV  175 (390)
Q Consensus        99 ~~~~~~~~~~W~~~~~~-~~~R-~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~-~~~~r~~~~~~  175 (390)
                      ++...-...+|+.+... +.+. ...++...++.+|++|..       ..+++-+-...+|+.+.... .| .. ...++
T Consensus        58 i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~-~~-~~~i~  128 (327)
T 2xbg_A           58 LMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLP-GS-PRLIK  128 (327)
T ss_dssp             EEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEET-------TEEEEESSTTSSCEECCCCTTCS-SC-EEEEE
T ss_pred             EEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECC-------CeEEEECCCCCCceECccccCCC-CC-eEEEE
Confidence            44444445689998642 2222 223444456788887521       13555433467999976432 12 12 23333


Q ss_pred             -EeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEE-CCEEEEEccCCCCCCCCCcceEEeee
Q 016413          176 -SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAV  253 (390)
Q Consensus       176 -~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~  253 (390)
                       .-++.+|+.|.         ...+++-+-.-.+|+.+.... +...++++.. ++.++++|- .+       ..|... 
T Consensus       129 ~~~~~~~~~~~~---------~g~v~~S~DgG~tW~~~~~~~-~~~~~~~~~~~~~~~~~~g~-~G-------~~~~S~-  189 (327)
T 2xbg_A          129 ALGNGSAEMITN---------VGAIYRTKDSGKNWQALVQEA-IGVMRNLNRSPSGEYVAVSS-RG-------SFYSTW-  189 (327)
T ss_dssp             EEETTEEEEEET---------TCCEEEESSTTSSEEEEECSC-CCCEEEEEECTTSCEEEEET-TS-------SEEEEE-
T ss_pred             EECCCCEEEEeC---------CccEEEEcCCCCCCEEeecCC-CcceEEEEEcCCCcEEEEEC-CC-------cEEEEe-
Confidence             35788888874         123555444467899886422 2233344433 456666552 21       122210 


Q ss_pred             eccccccCCeEEccCCCCCCCceeEEE-ECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEee-C-CCCCeEECC
Q 016413          254 KDGKALEKAWRTEIPIPRGGPHRACFV-FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYML-D-DEMKWKVLP  330 (390)
Q Consensus       254 ~~~~~~~~~W~~~~~~p~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y-d-~~~~W~~~~  330 (390)
                         |....+|+.+..... .....++. -++++|+.+.. +                      .++.. + ...+|+.+.
T Consensus       190 ---d~gG~tW~~~~~~~~-~~~~~~~~~~~g~~~~~~~~-G----------------------~~~~s~~D~G~tW~~~~  242 (327)
T 2xbg_A          190 ---EPGQTAWEPHNRTTS-RRLHNMGFTPDGRLWMIVNG-G----------------------KIAFSDPDNSENWGELL  242 (327)
T ss_dssp             ---CTTCSSCEEEECCSS-SCEEEEEECTTSCEEEEETT-T----------------------EEEEEETTEEEEECCCB
T ss_pred             ---CCCCCceeECCCCCC-CccceeEECCCCCEEEEeCC-c----------------------eEEEecCCCCCeeEecc
Confidence               012578988743222 22223333 35678877642 1                      15555 2 356898865


Q ss_pred             CCCCCCCcceeEEEEE-CCEEEEEcC
Q 016413          331 PMPKPNSHIECAWVIV-NNSIIITGG  355 (390)
Q Consensus       331 ~~~~~~~~~~~~~~~~-~~~l~v~GG  355 (390)
                      ..+.+......+++.. ++.+|+.|+
T Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~~g~  268 (327)
T 2xbg_A          243 SPLRRNSVGFLDLAYRTPNEVWLAGG  268 (327)
T ss_dssp             CTTSSCCSCEEEEEESSSSCEEEEES
T ss_pred             CCcccCCcceEEEEecCCCEEEEEeC
Confidence            3211111111222222 577888876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=95.86  E-value=0.71  Score=41.24  Aligned_cols=71  Identities=7%  Similarity=-0.051  Sum_probs=38.9

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK  208 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  208 (390)
                      ++||+.............++++|+.+.+-...-+...  .-...+....++.+|+.+..        ...+.++|+.+.+
T Consensus        53 ~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~--------~~~v~~~d~~~~~  122 (353)
T 3vgz_A           53 NALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL--KPFGATINNTTQTLWFGNTV--------NSAVTAIDAKTGE  122 (353)
T ss_dssp             TEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS--CCCSEEEETTTTEEEEEETT--------TTEEEEEETTTCC
T ss_pred             CEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC--CcceEEECCCCCEEEEEecC--------CCEEEEEeCCCCe
Confidence            4787765332111113579999998876443322222  11122222234568887642        3578999998876


Q ss_pred             e
Q 016413          209 W  209 (390)
Q Consensus       209 W  209 (390)
                      -
T Consensus       123 ~  123 (353)
T 3vgz_A          123 V  123 (353)
T ss_dssp             E
T ss_pred             e
Confidence            4

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=95.85  E-value=0.033  Score=49.92  Aligned_cols=22  Identities=14%  Similarity=0.148  Sum_probs=15.4

Q ss_pred             CCEEEEEcCCCCCCCcceeeEEeeeEEEeecCcc
Q 016413          347 NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSL  380 (390)
Q Consensus       347 ~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~  380 (390)
                      +++.++.|+.++.            |.+||+++.
T Consensus       317 dg~~l~sgs~Dg~------------v~iW~~~tG  338 (340)
T 4aow_A          317 DGQTLFAGYTDNL------------VRVWQVTIG  338 (340)
T ss_dssp             TSSEEEEEETTSC------------EEEEEEEC-
T ss_pred             CCCEEEEEeCCCE------------EEEEeCCCc
Confidence            6778888887644            778887764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=95.79  E-value=0.16  Score=45.40  Aligned_cols=69  Identities=13%  Similarity=0.200  Sum_probs=38.7

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-C--CEEEEEeceeCCCCCCCCceEEEEECC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-G--RYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~v~~yd~~  205 (390)
                      +.+++.|+.++      .+.++|+.+.+|..+..+... ...-.+++.. +  +.+++.|+.++        .+..||..
T Consensus        71 ~~~l~s~s~D~------~v~iWd~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~g~~lasgs~D~--------~i~lwd~~  135 (316)
T 3bg1_A           71 GNILASCSYDR------KVIIWREENGTWEKSHEHAGH-DSSVNSVCWAPHDYGLILACGSSDG--------AISLLTYT  135 (316)
T ss_dssp             SSCEEEEETTS------CEEEECCSSSCCCEEEEECCC-SSCCCEEEECCTTTCSCEEEECSSS--------CEEEEEEC
T ss_pred             CCEEEEEECCC------EEEEEECCCCcceEEEEccCC-CCceEEEEECCCCCCcEEEEEcCCC--------CEEEEecC
Confidence            56777887763      488889988777654333221 1112233332 2  56777776543        35667766


Q ss_pred             CC-CeEeC
Q 016413          206 TR-KWDSI  212 (390)
Q Consensus       206 ~~-~W~~~  212 (390)
                      +. .|...
T Consensus       136 ~~~~~~~~  143 (316)
T 3bg1_A          136 GEGQWEVK  143 (316)
T ss_dssp             SSSCEEEC
T ss_pred             CCCCccee
Confidence            54 47543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=95.73  E-value=0.62  Score=39.99  Aligned_cols=173  Identities=15%  Similarity=0.096  Sum_probs=79.6

Q ss_pred             ccEEEE-ecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccCCCCeE
Q 016413           32 ADFMWA-SSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWE  110 (390)
Q Consensus        32 ~~~l~~-~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~  110 (390)
                      ++.||+ .... .+       .+.+||+.+.....++....    ....++++-.+...-.... +..++.+|+......
T Consensus        34 ~g~l~v~~~~~-~~-------~i~~~~~~~~~~~~~~~~~~----~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~  100 (270)
T 1rwi_B           34 AGNVYVTSEGM-YG-------RVVKLATGSTGTTVLPFNGL----YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT  100 (270)
T ss_dssp             TCCEEEEECSS-SC-------EEEEECC-----EECCCCSC----CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred             CCCEEEEccCC-CC-------cEEEecCCCcccceEeeCCc----CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence            467887 4333 23       56778876665444332110    1123333322211111111 346778887766544


Q ss_pred             ECCCCCCcCCCceEEEE-CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-CCEEEEEecee
Q 016413          111 QMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQY  188 (390)
Q Consensus       111 ~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~~~iyv~GG~~  188 (390)
                      .+..... ..-.+++.. +++||+....+      ..+.++|..+...........   ..-.+++.. +++||+.... 
T Consensus       101 ~~~~~~~-~~p~~i~~~~~g~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~~-  169 (270)
T 1rwi_B          101 VLPFDGL-NYPEGLAVDTQGAVYVADRGN------NRVVKLAAGSKTQTVLPFTGL---NDPDGVAVDNSGNVYVTDTD-  169 (270)
T ss_dssp             ECCCCSC-SSEEEEEECTTCCEEEEEGGG------TEEEEECTTCCSCEECCCCSC---CSCCCEEECTTCCEEEEEGG-
T ss_pred             eeecCCc-CCCcceEECCCCCEEEEECCC------CEEEEEECCCceeEeeccccC---CCceeEEEeCCCCEEEEECC-
Confidence            4322111 111233332 56788875432      358888876665443321111   112234443 5779987532 


Q ss_pred             CCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEE-CCEEEEEcc
Q 016413          189 GPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGG  236 (390)
Q Consensus       189 ~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG  236 (390)
                             ...+.+||+.+..-........ ..-..++.. ++.||+...
T Consensus       170 -------~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l~v~~~  210 (270)
T 1rwi_B          170 -------NNRVVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEH  210 (270)
T ss_dssp             -------GTEEEEECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEET
T ss_pred             -------CCEEEEEecCCCceEeecccCC-CCceEEEECCCCCEEEEEC
Confidence                   3568899988765443321111 111233333 458888754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=95.73  E-value=0.68  Score=40.75  Aligned_cols=64  Identities=11%  Similarity=0.137  Sum_probs=36.2

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeC---CEEEEEeceeCCCCCCCCceEEEEECC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDG---RYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~---~~iyv~GG~~~~~~~~~~~~v~~yd~~  205 (390)
                      +.+++.|+.++      .+.++|+.+.+|..+..+... ...-.+++...   +.+++.|+.+        ..+..||..
T Consensus        67 g~~l~s~s~D~------~v~iWd~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~g~~l~s~s~d--------~~v~~wd~~  131 (297)
T 2pm7_B           67 GTILASCSYDG------KVMIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPMLLVASSD--------GKVSVVEFK  131 (297)
T ss_dssp             CSEEEEEETTT------EEEEEEBSSSCBCCCEEECCC-SSCEEEEEECCGGGCSEEEEEETT--------SEEEEEEBC
T ss_pred             CCEEEEEcCCC------EEEEEEcCCCceEEEEEeecC-CCceeEEEeCcCCCCcEEEEEECC--------CcEEEEEec
Confidence            56788888763      488889888877655433321 11122233321   4566666643        346667765


Q ss_pred             CC
Q 016413          206 TR  207 (390)
Q Consensus       206 ~~  207 (390)
                      +.
T Consensus       132 ~~  133 (297)
T 2pm7_B          132 EN  133 (297)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=95.72  E-value=0.17  Score=45.60  Aligned_cols=101  Identities=7%  Similarity=0.000  Sum_probs=47.5

Q ss_pred             cccccccCCCCeEECCCCCCcC-CCceEEEE-CC-EEEEEecCCCCCCCCCeEEEEeCC-CCceeecCCCCC----CCCC
Q 016413           98 TFADLPAPDLEWEQMPSAPVPR-LDGAAIQI-KN-LFYVFAGYGSLDYVHSHVDVYNFT-DNKWVDRFDMPK----DMAH  169 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R-~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~l~~----~~~r  169 (390)
                      .++.++....+++.+..+.... .-..++.. ++ .||+.+..+      ..+.+||+. +.+...+..+..    |..|
T Consensus        64 ~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~------~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~  137 (347)
T 3hfq_A           64 GIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK------GTAEVMKIAADGALTLTDTVQHSGHGPRPE  137 (347)
T ss_dssp             EEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTT------TEEEEEEECTTSCEEEEEEEECCCCCSSTT
T ss_pred             eEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC------CEEEEEEeCCCCCeeecceeecCCCCCCcc
Confidence            5777777666665554322111 11223333 34 576665322      346777764 233333221111    1001


Q ss_pred             ----cceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECC-CCCeEeC
Q 016413          170 ----SHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSE-TRKWDSI  212 (390)
Q Consensus       170 ----~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~-~~~W~~~  212 (390)
                          .-+.++. -++++|+.+..        .+.+.+||+. +.+...+
T Consensus       138 ~~~~~~~~~~~spdg~l~v~~~~--------~~~v~~~~~~~~g~~~~~  178 (347)
T 3hfq_A          138 QDGSHIHYTDLTPDNRLAVIDLG--------SDKVYVYNVSDAGQLSEQ  178 (347)
T ss_dssp             CSSCCEEEEEECTTSCEEEEETT--------TTEEEEEEECTTSCEEEE
T ss_pred             ccCCCceEEEECCCCcEEEEeCC--------CCEEEEEEECCCCcEEEe
Confidence                1223333 35667776531        3568888887 4555543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.72  E-value=0.18  Score=44.87  Aligned_cols=130  Identities=9%  Similarity=-0.001  Sum_probs=62.0

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEE--CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEE
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV  175 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~  175 (390)
                      .+..+|..+.+......+.........+.+  +++.++.|+.++      .+.+||+.+.+-...-....   ..-.+++
T Consensus       120 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~v~~~d~~~~~~~~~~~~~~---~~i~~~~  190 (337)
T 1gxr_A          120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG------NIAVWDLHNQTLVRQFQGHT---DGASCID  190 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEECCCS---SCEEEEE
T ss_pred             cEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC------cEEEEeCCCCceeeeeeccc---CceEEEE
Confidence            566667666553332222211111122222  556777777653      48899998776443211111   1122333


Q ss_pred             Ee-CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEE-ECCEEEEEccCCCCCCCCCcceEEe
Q 016413          176 SD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQL-WRGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       176 ~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      .. ++..++.|+.        ...+..||+.+.+-...-..+.  .-.+++. -+++++++|+.+     ..+..|++
T Consensus       191 ~~~~~~~l~~~~~--------dg~i~~~d~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~-----~~i~~~~~  253 (337)
T 1gxr_A          191 ISNDGTKLWTGGL--------DNTVRSWDLREGRQLQQHDFTS--QIFSLGYCPTGEWLAVGMES-----SNVEVLHV  253 (337)
T ss_dssp             ECTTSSEEEEEET--------TSEEEEEETTTTEEEEEEECSS--CEEEEEECTTSSEEEEEETT-----SCEEEEET
T ss_pred             ECCCCCEEEEEec--------CCcEEEEECCCCceEeeecCCC--ceEEEEECCCCCEEEEEcCC-----CcEEEEEC
Confidence            32 5666666653        3458889987764322211111  1122222 255666666643     34666664

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=95.72  E-value=0.41  Score=44.05  Aligned_cols=106  Identities=10%  Similarity=0.119  Sum_probs=52.9

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCC---CCcceEEEEe-C-CEEEEEeceeCCCCCCCCceEEEEE
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM---AHSHLGVVSD-G-RYIYIVSGQYGPQCRGPTSRTFVLD  203 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~---~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v~~yd  203 (390)
                      +.+++.|+.++      .+.+||+.+.+-...-....+.   ...-.+++.. + ..+++.|+.++.     ...+.+||
T Consensus       178 ~~~l~~~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-----~~~i~~~d  246 (416)
T 2pm9_A          178 AHVFASAGSSN------FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN-----DPSILIWD  246 (416)
T ss_dssp             TTEEEEESSSS------CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS-----SCCCCEEE
T ss_pred             CcEEEEEcCCC------CEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC-----CceEEEEe
Confidence            56888887653      4889999887654332222100   1112233333 2 357777765431     12577888


Q ss_pred             CCCCCeEeCCCCC-CCCCCceEEEE---CCEEEEEccCCCCCCCCCcceEEe
Q 016413          204 SETRKWDSIPPLP-SPRYSPATQLW---RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       204 ~~~~~W~~~~~~p-~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      ..+.. ..+..+. ........+.+   ++.+++.|+.+     ..+..|++
T Consensus       247 ~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-----g~v~~wd~  292 (416)
T 2pm9_A          247 LRNAN-TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD-----NTVLLWNP  292 (416)
T ss_dssp             TTSTT-SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS-----SEEEEECS
T ss_pred             CCCCC-CCcEEeecCccCceeEEEeCCCCCCeEEEEeCC-----CCEEEeeC
Confidence            87642 1111222 11111222222   56777777654     34666664

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=95.67  E-value=0.66  Score=41.76  Aligned_cols=99  Identities=5%  Similarity=0.094  Sum_probs=50.1

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +++ ++.|+.++      .+..||+.+.+-...  +... ...-.+++. -++.+++.|+.+        ..+..||..+
T Consensus       154 ~~~-l~s~s~d~------~i~~wd~~~~~~~~~--~~~h-~~~v~~~~~~~~~~~l~sg~~d--------~~v~~wd~~~  215 (340)
T 1got_B          154 DNQ-IVTSSGDT------TCALWDIETGQQTTT--FTGH-TGDVMSLSLAPDTRLFVSGACD--------ASAKLWDVRE  215 (340)
T ss_dssp             TTE-EEEEETTS------CEEEEETTTTEEEEE--ECCC-SSCEEEEEECTTSSEEEEEETT--------SCEEEEETTT
T ss_pred             CCc-EEEEECCC------cEEEEECCCCcEEEE--EcCC-CCceEEEEECCCCCEEEEEeCC--------CcEEEEECCC
Confidence            455 55565543      488899887764322  2111 111223333 356677777753        3477888876


Q ss_pred             CCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      ..-...  +.........+.+  ++.+++.|+.+     ..+..|++
T Consensus       216 ~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~d-----~~v~iwd~  255 (340)
T 1got_B          216 GMCRQT--FTGHESDINAICFFPNGNAFATGSDD-----ATCRLFDL  255 (340)
T ss_dssp             CSEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEET
T ss_pred             CeeEEE--EcCCcCCEEEEEEcCCCCEEEEEcCC-----CcEEEEEC
Confidence            543221  1111111112222  56677777654     35777775

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=95.66  E-value=0.21  Score=46.85  Aligned_cols=201  Identities=10%  Similarity=0.056  Sum_probs=100.1

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-CC-EEEEEeceeCCCCCCCCceEEEEECC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GR-YIYIVSGQYGPQCRGPTSRTFVLDSE  205 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~v~~yd~~  205 (390)
                      +++.+++++.+..   ...++++|+.+.+...+...+.    ...+.+.. ++ +|++.+..++      ...++.+|+.
T Consensus       189 dg~~la~~s~~~~---~~~i~~~d~~tg~~~~l~~~~~----~~~~~~~spdg~~la~~~~~~g------~~~i~~~d~~  255 (415)
T 2hqs_A          189 DGSKLAYVTFESG---RSALVIQTLANGAVRQVASFPR----HNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLA  255 (415)
T ss_dssp             TSSEEEEEECTTS---SCEEEEEETTTCCEEEEECCSS----CEEEEEECTTSSEEEEEECTTS------SCEEEEEETT
T ss_pred             CCCEEEEEEecCC---CcEEEEEECCCCcEEEeecCCC----cccCEEEcCCCCEEEEEEecCC------CceEEEEECC
Confidence            5566666665432   2469999999888766544332    12233332 44 4554543222      4579999999


Q ss_pred             CCCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEE-EEC
Q 016413          206 TRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACF-VFN  282 (390)
Q Consensus       206 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~-~~~  282 (390)
                      +.+...+...+.   .......  +++.+++++....  ...+..|+       ..+.+-..+...  .......+ .-+
T Consensus       256 ~~~~~~l~~~~~---~~~~~~~spdg~~l~~~s~~~g--~~~i~~~d-------~~~~~~~~l~~~--~~~~~~~~~spd  321 (415)
T 2hqs_A          256 SGQIRQVTDGRS---NNTEPTWFPDSQNLAFTSDQAG--RPQVYKVN-------INGGAPQRITWE--GSQNQDADVSSD  321 (415)
T ss_dssp             TCCEEECCCCSS---CEEEEEECTTSSEEEEEECTTS--SCEEEEEE-------TTSSCCEECCCS--SSEEEEEEECTT
T ss_pred             CCCEEeCcCCCC---cccceEECCCCCEEEEEECCCC--CcEEEEEE-------CCCCCEEEEecC--CCcccCeEECCC
Confidence            887776654321   1112222  4444444432111  12333334       234443332211  11111122 225


Q ss_pred             CEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCC
Q 016413          283 DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHP  361 (390)
Q Consensus       283 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~  361 (390)
                      ++.+++++....                   ...++++| .+.+...+....    .........+++.+++++.+... 
T Consensus       322 G~~l~~~~~~~g-------------------~~~i~~~d~~~~~~~~l~~~~----~~~~~~~spdg~~l~~~s~~~~~-  377 (415)
T 2hqs_A          322 GKFMVMVSSNGG-------------------QQHIAKQDLATGGVQVLSSTF----LDETPSLAPNGTMVIYSSSQGMG-  377 (415)
T ss_dssp             SSEEEEEEECSS-------------------CEEEEEEETTTCCEEECCCSS----SCEEEEECTTSSEEEEEEEETTE-
T ss_pred             CCEEEEEECcCC-------------------ceEEEEEECCCCCEEEecCCC----CcCCeEEcCCCCEEEEEEcCCCc-
Confidence            555555543211                   12488998 666666654322    11111233467777776654331 


Q ss_pred             cceeeEEeeeEEEeecCccceeeccC
Q 016413          362 MTKRMILVGEVFQFHLDSLVIIYHYR  387 (390)
Q Consensus       362 ~~~~~~~~~~v~~yd~~~~~W~~v~~  387 (390)
                              ..++.+|+.......+..
T Consensus       378 --------~~l~~~d~~g~~~~~l~~  395 (415)
T 2hqs_A          378 --------SVLNLVSTDGRFKARLPA  395 (415)
T ss_dssp             --------EEEEEEETTSCCEEECCC
T ss_pred             --------cEEEEEECCCCcEEEeeC
Confidence                    258999988777666543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=95.64  E-value=0.24  Score=43.29  Aligned_cols=98  Identities=16%  Similarity=0.103  Sum_probs=62.4

Q ss_pred             cceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceE
Q 016413          170 SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHW  249 (390)
Q Consensus       170 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  249 (390)
                      +..++...++.||+..|.++        .+.++|+++.+=..-- ++..-++..++..+++||+....+     ..+.+|
T Consensus        56 ftqGL~~~~~~Ly~stG~~g--------~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~-----~~v~V~  121 (268)
T 3nok_A           56 FTQGLVFHQGHFFESTGHQG--------TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTE-----GLLFTW  121 (268)
T ss_dssp             CEEEEEEETTEEEEEETTTT--------EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSS-----CEEEEE
T ss_pred             ccceEEEECCEEEEEcCCCC--------EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccC-----CEEEEE
Confidence            44567778999999988532        3888999887642222 444334455778899999996532     345556


Q ss_pred             EeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcC
Q 016413          250 SIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGG  290 (390)
Q Consensus       250 ~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG  290 (390)
                      |       +++  .+.+..++.+..+.+++.-+++||+.-|
T Consensus       122 D-------~~T--l~~~~ti~~~~eGwGLt~Dg~~L~vSdG  153 (268)
T 3nok_A          122 S-------GMP--PQRERTTRYSGEGWGLCYWNGKLVRSDG  153 (268)
T ss_dssp             E-------TTT--TEEEEEEECSSCCCCEEEETTEEEEECS
T ss_pred             E-------CCc--CcEEEEEeCCCceeEEecCCCEEEEECC
Confidence            5       333  3333333333334577777888999876

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=95.63  E-value=1.2  Score=41.70  Aligned_cols=177  Identities=10%  Similarity=0.079  Sum_probs=88.1

Q ss_pred             EECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEEC
Q 016413          126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDS  204 (390)
Q Consensus       126 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~  204 (390)
                      ..++.+++.|+.++      .+.+||+.+.+-...  +... ...-.+++. .++..++.|+.+        ..+..||.
T Consensus       277 ~~~~~~l~~~~~d~------~i~vwd~~~~~~~~~--~~~~-~~~v~~~~~~~~~~~l~sg~~d--------g~i~vwd~  339 (464)
T 3v7d_B          277 SGHGNIVVSGSYDN------TLIVWDVAQMKCLYI--LSGH-TDRIYSTIYDHERKRCISASMD--------TTIRIWDL  339 (464)
T ss_dssp             EEETTEEEEEETTS------CEEEEETTTTEEEEE--ECCC-SSCEEEEEEETTTTEEEEEETT--------SCEEEEET
T ss_pred             cCCCCEEEEEeCCC------eEEEEECCCCcEEEE--ecCC-CCCEEEEEEcCCCCEEEEEeCC--------CcEEEEEC
Confidence            34556677777663      488899877654322  2111 111223333 355566677643        34788998


Q ss_pred             CCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCE
Q 016413          205 ETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDR  284 (390)
Q Consensus       205 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~  284 (390)
                      .+.+-  +..+.........+..++..++.|+.+     ..+..|++       .+..-...... .......+...+++
T Consensus       340 ~~~~~--~~~~~~h~~~v~~~~~~~~~l~s~s~d-----g~v~vwd~-------~~~~~~~~~~~-~~~~~~~~~~~~~~  404 (464)
T 3v7d_B          340 ENGEL--MYTLQGHTALVGLLRLSDKFLVSAAAD-----GSIRGWDA-------NDYSRKFSYHH-TNLSAITTFYVSDN  404 (464)
T ss_dssp             TTTEE--EEEECCCSSCEEEEEECSSEEEEEETT-----SEEEEEET-------TTCCEEEEEEC-TTCCCEEEEEECSS
T ss_pred             CCCcE--EEEEeCCCCcEEEEEEcCCEEEEEeCC-----CcEEEEEC-------CCCceeeeecC-CCCccEEEEEeCCC
Confidence            76542  222222223334445567777777654     35677774       22221111111 11222345566778


Q ss_pred             EEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCC
Q 016413          285 LFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEK  359 (390)
Q Consensus       285 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~  359 (390)
                      +++.|+ ++                      .+.+|| .+.+-......+. .. .-.++...++.+++.++.++.
T Consensus       405 ~l~~~~-dg----------------------~i~iwd~~~g~~~~~~~~~~-~~-~v~~v~~~~~~l~~~~~~~g~  455 (464)
T 3v7d_B          405 ILVSGS-EN----------------------QFNIYNLRSGKLVHANILKD-AD-QIWSVNFKGKTLVAAVEKDGQ  455 (464)
T ss_dssp             EEEEEE-TT----------------------EEEEEETTTCCEEESCTTTT-CS-EEEEEEEETTEEEEEEEETTE
T ss_pred             EEEEec-CC----------------------eEEEEECCCCcEEehhhccC-CC-cEEEEEecCCEEEEEEEeCCe
Confidence            777777 32                      388888 6554333211222 12 122334446666666665443

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=95.57  E-value=0.55  Score=44.57  Aligned_cols=59  Identities=12%  Similarity=0.197  Sum_probs=37.2

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  207 (390)
                      ++++|+|-|        +..|+||..+++.... .-+. .+.. -++....+++|+|-|          +..++||+.+.
T Consensus       158 ~~~~yfFkG--------~~yw~yd~~~~~~~~~-~w~g-i~~i-DAA~~~~g~~YfFkG----------~~y~rfd~~~~  216 (460)
T 1qhu_A          158 DEGILFFQG--------NRKWFWDLTTGTKKER-SWPA-VGNC-TSALRWLGRYYCFQG----------NQFLRFNPVSG  216 (460)
T ss_dssp             SSEEEEEET--------TEEEEEETTTTEEEEE-CCTT-SCCC-SEEEEETTEEEEEET----------TEEEEECTTTC
T ss_pred             CCeEEEEec--------ccEEEEecccceeecc-cCCC-CCcc-chheeeCCceEEEEC----------CEEEEEcCccC
Confidence            678898876        3489999988765431 1111 1122 234445789999976          45677877553

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.57  E-value=0.1  Score=46.47  Aligned_cols=102  Identities=8%  Similarity=0.099  Sum_probs=51.8

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +++.++.|+.+      ..+.+||+.+.+......+.... ..-.+++. -++..++.|+.+        ..+..||..+
T Consensus       108 ~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d--------g~v~~~d~~~  172 (337)
T 1gxr_A          108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAELTSSA-PACYALAISPDSKVCFSCCSD--------GNIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESS------SEEEEEECCCC--EEEEEEECSS-SCEEEEEECTTSSEEEEEETT--------SCEEEEETTT
T ss_pred             CCCEEEEEcCC------CcEEEEECCCCCcceeeecccCC-CceEEEEECCCCCEEEEEeCC--------CcEEEEeCCC
Confidence            45677777655      35889999888754443332211 11223333 255666676543        3478899887


Q ss_pred             CCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      .+....  +.........+.+  ++..++.++.+     ..+..|++
T Consensus       173 ~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~~~d~  212 (337)
T 1gxr_A          173 QTLVRQ--FQGHTDGASCIDISNDGTKLWTGGLD-----NTVRSWDL  212 (337)
T ss_dssp             TEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEET
T ss_pred             Cceeee--eecccCceEEEEECCCCCEEEEEecC-----CcEEEEEC
Confidence            653322  1111111222222  55566666643     34666664

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=95.41  E-value=0.31  Score=45.02  Aligned_cols=64  Identities=3%  Similarity=-0.055  Sum_probs=34.4

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-CCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      ++++++.|+.++      .+.+||+.+.+-.  ..+... ...-.+++.. ++..++.|+.+        ..+..||..+
T Consensus       150 ~~~~l~s~s~d~------~i~iwd~~~~~~~--~~~~~h-~~~v~~~~~~~~~~~l~s~~~d--------~~v~iwd~~~  212 (420)
T 3vl1_A          150 SGEALISSSQDM------QLKIWSVKDGSNP--RTLIGH-RATVTDIAIIDRGRNVLSASLD--------GTIRLWECGT  212 (420)
T ss_dssp             TSSEEEEEETTS------EEEEEETTTCCCC--EEEECC-SSCEEEEEEETTTTEEEEEETT--------SCEEEEETTT
T ss_pred             CCCEEEEEeCCC------eEEEEeCCCCcCc--eEEcCC-CCcEEEEEEcCCCCEEEEEcCC--------CcEEEeECCC
Confidence            566777777663      5888998765421  111110 1112223332 55666677643        3477788876


Q ss_pred             CC
Q 016413          207 RK  208 (390)
Q Consensus       207 ~~  208 (390)
                      .+
T Consensus       213 ~~  214 (420)
T 3vl1_A          213 GT  214 (420)
T ss_dssp             TE
T ss_pred             Cc
Confidence            54

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=95.35  E-value=0.97  Score=41.42  Aligned_cols=106  Identities=8%  Similarity=0.147  Sum_probs=52.9

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCc------ee-ecCCCCCCCCCcceEEEEe-C-CEEEEEeceeCCCCCCCCceE
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNK------WV-DRFDMPKDMAHSHLGVVSD-G-RYIYIVSGQYGPQCRGPTSRT  199 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~------W~-~~~~l~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v  199 (390)
                      +.+++.|+.++      .+.+||+.+.+      -. .+...... ...-.+++.. + +.+++.|+.+        ..+
T Consensus       126 ~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d--------g~v  190 (416)
T 2pm9_A          126 DNVLASGGNNG------EIFIWDMNKCTESPSNYTPLTPGQSMSS-VDEVISLAWNQSLAHVFASAGSS--------NFA  190 (416)
T ss_dssp             TTBEEEECSSS------CEEBCBTTTTSSCTTTCCCBCCCCSCCS-SCCCCEEEECSSCTTEEEEESSS--------SCE
T ss_pred             CCEEEEEcCCC------eEEEEECCCCccccccccccccccccCC-CCCeeEEEeCCCCCcEEEEEcCC--------CCE
Confidence            67788887663      48888887765      11 11111111 1122233333 2 5677777643        348


Q ss_pred             EEEECCCCCeEeCCCCCCC----CCC-ceEEEE-C-CEEEEEccCCCCCCCCCcceEEe
Q 016413          200 FVLDSETRKWDSIPPLPSP----RYS-PATQLW-R-GRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       200 ~~yd~~~~~W~~~~~~p~~----r~~-~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      .+||..+.+-...-.....    ... .+++.. + ..+++.|+.++.  ...+..|++
T Consensus       191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~  247 (416)
T 2pm9_A          191 SIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDL  247 (416)
T ss_dssp             EEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEET
T ss_pred             EEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC--CceEEEEeC
Confidence            8899887654332222211    111 222222 2 356777665421  125777775

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=95.26  E-value=0.47  Score=43.55  Aligned_cols=26  Identities=4%  Similarity=0.026  Sum_probs=16.9

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceee
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD  159 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~  159 (390)
                      +++.++.|+.++      .+..||+.+.+-..
T Consensus       160 ~~~~l~~~~~d~------~i~iwd~~~~~~~~  185 (425)
T 1r5m_A          160 DGTHIISMDVEN------VTILWNVISGTVMQ  185 (425)
T ss_dssp             TSSEEEEEETTC------CEEEEETTTTEEEE
T ss_pred             CCCEEEEEecCC------eEEEEECCCCcEEE
Confidence            456666676553      47888987776543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=95.20  E-value=0.84  Score=42.24  Aligned_cols=95  Identities=13%  Similarity=0.114  Sum_probs=51.3

Q ss_pred             CCeEECCCCCCcCCCceEEEE---CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCC---CCCCCC-------cceE
Q 016413          107 LEWEQMPSAPVPRLDGAAIQI---KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM---PKDMAH-------SHLG  173 (390)
Q Consensus       107 ~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l---~~~~~r-------~~~~  173 (390)
                      .+|+.+.+......-++++.-   .+.||+.+......   .-+++.+-...+|+.+...   +....+       .-.+
T Consensus        43 ~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g---~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~  119 (394)
T 3b7f_A           43 RTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLG---PTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFW  119 (394)
T ss_dssp             CSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CC---EEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEE
T ss_pred             CCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCC---ccEEEeCCCCCCceECCccccCCCcccccccccccceeE
Confidence            689876321111112333332   45788765432111   2478887788899987532   211111       1123


Q ss_pred             EEEe----CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC
Q 016413          174 VVSD----GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP  213 (390)
Q Consensus       174 ~~~~----~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~  213 (390)
                      ++..    .+.||+.+-         ...+++.+-...+|+.+.
T Consensus       120 l~~~~~~~~~~l~~g~~---------~ggl~~S~DgG~tW~~~~  154 (394)
T 3b7f_A          120 LTPGHASEPGTWYAGTS---------PQGLFRSTDHGASWEPVA  154 (394)
T ss_dssp             EEECCTTSTTCEEEEEE---------TTEEEEESSTTSBCEECH
T ss_pred             EEeCCCCCCCEEEEEec---------CCcEEEEcCCCCCeEECc
Confidence            3443    577887642         245788888888999885

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=95.19  E-value=0.13  Score=44.68  Aligned_cols=145  Identities=7%  Similarity=-0.095  Sum_probs=72.6

Q ss_pred             ceeeeeccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccCC-CCeEECCCCCCcCCCceE-EEEC
Q 016413           51 SVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPD-LEWEQMPSAPVPRLDGAA-IQIK  128 (390)
Q Consensus        51 ~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~W~~~~~~~~~R~~~~~-~~~~  128 (390)
                      ..+..+|+.+.....+......     -.+++...+...-.. .....++.+|..+ .+...+...+....-..+ ..-+
T Consensus        22 ~~i~~~d~~~~~~~~~~~~~~~-----v~~~~~spdg~~l~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd   95 (297)
T 2ojh_A           22 SSIEIFNIRTRKMRVVWQTPEL-----FEAPNWSPDGKYLLL-NSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD   95 (297)
T ss_dssp             EEEEEEETTTTEEEEEEEESSC-----CEEEEECTTSSEEEE-EETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred             eeEEEEeCCCCceeeeccCCcc-----eEeeEECCCCCEEEE-EcCCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence            4788888888776654432211     111121111100000 0123677888877 666665543321221222 2235


Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-C-CEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-G-RYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      ++.+++++.+...  ...++.+|..+..-..+....    . ...++.. + ..|++.++.++      ...++.+|..+
T Consensus        96 g~~l~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~----~-~~~~~~spdg~~l~~~~~~~~------~~~l~~~~~~~  162 (297)
T 2ojh_A           96 GALYAISDKVEFG--KSAIYLLPSTGGTPRLMTKNL----P-SYWHGWSPDGKSFTYCGIRDQ------VFDIYSMDIDS  162 (297)
T ss_dssp             SSEEEEEECTTTS--SCEEEEEETTCCCCEECCSSS----S-EEEEEECTTSSEEEEEEEETT------EEEEEEEETTT
T ss_pred             CCEEEEEEeCCCC--cceEEEEECCCCceEEeecCC----C-ccceEECCCCCEEEEEECCCC------ceEEEEEECCC
Confidence            6666666543322  356999998877755543322    1 2222332 3 44555554322      34678888887


Q ss_pred             CCeEeCCC
Q 016413          207 RKWDSIPP  214 (390)
Q Consensus       207 ~~W~~~~~  214 (390)
                      .....+..
T Consensus       163 ~~~~~~~~  170 (297)
T 2ojh_A          163 GVETRLTH  170 (297)
T ss_dssp             CCEEECCC
T ss_pred             CcceEccc
Confidence            77766654

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=95.16  E-value=2  Score=39.69  Aligned_cols=100  Identities=11%  Similarity=0.127  Sum_probs=56.5

Q ss_pred             cccccccCCCCeEECCCC---CCc--C----C-Cc--eEEEE----CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecC
Q 016413           98 TFADLPAPDLEWEQMPSA---PVP--R----L-DG--AAIQI----KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRF  161 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~---~~~--R----~-~~--~~~~~----~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~  161 (390)
                      .+++.+....+|+.+...   +..  +    . ..  +++.-    .+.||+.+- .      .-+++.+-...+|+.+.
T Consensus        82 gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-~------ggl~~S~DgG~tW~~~~  154 (394)
T 3b7f_A           82 TVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS-P------QGLFRSTDHGASWEPVA  154 (394)
T ss_dssp             EEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE-T------TEEEEESSTTSBCEECH
T ss_pred             cEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec-C------CcEEEEcCCCCCeEECc
Confidence            466666667899988642   211  1    1 11  22222    456777542 1      24888888889999875


Q ss_pred             CC---CC------------CCCCcceEEEEe---CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC
Q 016413          162 DM---PK------------DMAHSHLGVVSD---GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP  213 (390)
Q Consensus       162 ~l---~~------------~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~  213 (390)
                      .+   |.            +.....+++++.   .+.||+...         ...+++.+-...+|+.+.
T Consensus       155 ~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~---------~ggl~~s~DgG~tW~~~~  215 (394)
T 3b7f_A          155 GFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS---------SGGVFESTDAGTDWKPLN  215 (394)
T ss_dssp             HHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE---------TBEEEEESSTTSSCEECC
T ss_pred             CccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC---------CCCEEEECCCCCCceECC
Confidence            32   21            001122344443   356777543         134777877788999885

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.16  E-value=3  Score=41.79  Aligned_cols=99  Identities=18%  Similarity=0.315  Sum_probs=58.9

Q ss_pred             ceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCc--eeecCCCCCCC------CCcceEEEEeCCEEEEEeceeCCCCC
Q 016413          122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDM------AHSHLGVVSDGRYIYIVSGQYGPQCR  193 (390)
Q Consensus       122 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~------~r~~~~~~~~~~~iyv~GG~~~~~~~  193 (390)
                      .+.++.++.||+....       ..+..+|..+.+  |+.-...+...      .....+.++.+++||+...       
T Consensus        71 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------  136 (677)
T 1kb0_A           71 ATPVVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------  136 (677)
T ss_dssp             CCCEEETTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------
T ss_pred             eCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------
Confidence            3446779999998652       358899988764  87644322100      0112345668899988642       


Q ss_pred             CCCceEEEEECCCCC--eEeCCC-C-CC-CCCCceEEEECCEEEEEcc
Q 016413          194 GPTSRTFVLDSETRK--WDSIPP-L-PS-PRYSPATQLWRGRLHVMGG  236 (390)
Q Consensus       194 ~~~~~v~~yd~~~~~--W~~~~~-~-p~-~r~~~~~~~~~~~iyv~GG  236 (390)
                        ...+..+|.++.+  |+.-.. - +. .....+.++.++.+|+..+
T Consensus       137 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~  182 (677)
T 1kb0_A          137 --DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNG  182 (677)
T ss_dssp             --TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCB
T ss_pred             --CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEec
Confidence              3568899987654  876432 1 11 1122334567888887654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=95.14  E-value=0.62  Score=41.95  Aligned_cols=102  Identities=14%  Similarity=0.163  Sum_probs=49.1

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCc--eeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  205 (390)
                      ++..++.||.++      .+.+||+.+..  ......+..............++. ++.|+.+        ..+..||+.
T Consensus       108 ~~~~l~s~~~d~------~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d--------~~i~~wd~~  172 (340)
T 1got_B          108 SGNYVACGGLDN------ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD--------TTCALWDIE  172 (340)
T ss_dssp             TSSEEEEEETTC------EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT--------SCEEEEETT
T ss_pred             CCCEEEEEeCCC------eEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC--------CcEEEEECC
Confidence            566777788763      47888877643  111111111001111122234565 4455432        347788987


Q ss_pred             CCCeEeCCCCCCCCCC-ceEEEE-CCEEEEEccCCCCCCCCCcceEEe
Q 016413          206 TRKWDSIPPLPSPRYS-PATQLW-RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       206 ~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      +..-..  .+...... .+++.. ++.+++.|+.+     ..+..|++
T Consensus       173 ~~~~~~--~~~~h~~~v~~~~~~~~~~~l~sg~~d-----~~v~~wd~  213 (340)
T 1got_B          173 TGQQTT--TFTGHTGDVMSLSLAPDTRLFVSGACD-----ASAKLWDV  213 (340)
T ss_dssp             TTEEEE--EECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEET
T ss_pred             CCcEEE--EEcCCCCceEEEEECCCCCEEEEEeCC-----CcEEEEEC
Confidence            764322  11111111 122222 56677777764     35777874

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=95.13  E-value=0.76  Score=46.95  Aligned_cols=205  Identities=8%  Similarity=-0.002  Sum_probs=96.7

Q ss_pred             eeeeeccCCCceEeecCCCCCcc-cc-ccceEEEec-CCCc-hhHHHhhhcccccccCCCCeEECCCCCCcCCCceE--E
Q 016413           52 VASNWALEKSGVVVIPHVNATKI-DR-QRESVAVID-KKGQ-DAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAA--I  125 (390)
Q Consensus        52 ~~~~~d~~~~~W~~l~~~~~~p~-~r-~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~~~~--~  125 (390)
                      -+.+||+.++++.........+. .. ...-.++.. ..+. ---.....-++.+|+.+.+++.............+  .
T Consensus       378 Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i  457 (795)
T 4a2l_A          378 GLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAI  457 (795)
T ss_dssp             CEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEE
T ss_pred             CeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEE
Confidence            36778888888877654221100 00 111112221 2221 11111223678888888877766432111111111  1


Q ss_pred             EE--CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCC--CCCC-CcceEEEE-eCCEEEEEeceeCCCCCCCCceE
Q 016413          126 QI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP--KDMA-HSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRT  199 (390)
Q Consensus       126 ~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~--~~~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v  199 (390)
                      ..  ++.||+... .       -+.+||+.+++|+......  .+.. ..-.++.. .++.|++-..          .-+
T Consensus       458 ~~d~~g~lwigt~-~-------Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~----------~Gl  519 (795)
T 4a2l_A          458 LPDGEGNLWLGTL-S-------ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE----------EGL  519 (795)
T ss_dssp             EECSSSCEEEEES-S-------CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES----------SCE
T ss_pred             EECCCCCEEEEec-C-------ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC----------Cce
Confidence            12  467777542 2       2899999999998875431  1111 11122222 3567877542          237


Q ss_pred             EEEECCCCCeEeCCCC---C-CCC-CCceEEE-ECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEcc---CCC
Q 016413          200 FVLDSETRKWDSIPPL---P-SPR-YSPATQL-WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI---PIP  270 (390)
Q Consensus       200 ~~yd~~~~~W~~~~~~---p-~~r-~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~---~~p  270 (390)
                      .+||+.++++ .....   . .+- .-.+++. .++.|++....       .+.+|+       +.+.+++...   .+|
T Consensus       520 ~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-------Gl~~~d-------~~~~~~~~~~~~~gl~  584 (795)
T 4a2l_A          520 SVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-------GFYCFN-------EKDKQIKRYNTTNGLP  584 (795)
T ss_dssp             EEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-------CEEEEE-------TTTTEEEEECGGGTCS
T ss_pred             EEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-------CceeEC-------CCCCcEEEeCCCCCCc
Confidence            8899888877 43211   1 111 1112222 25677775421       234444       5666666542   244


Q ss_pred             CCCCceeEEEE-CCEEEEEcC
Q 016413          271 RGGPHRACFVF-NDRLFVVGG  290 (390)
Q Consensus       271 ~~~~~~~~~~~-~~~iyv~GG  290 (390)
                      .... .+++.- ++.|++.+.
T Consensus       585 ~~~i-~~i~~d~~g~lWi~t~  604 (795)
T 4a2l_A          585 NNVV-YGILEDSFGRLWLSTN  604 (795)
T ss_dssp             CSCE-EEEEECTTSCEEEEET
T ss_pred             hhhe-EEEEECCCCCEEEEcC
Confidence            4332 223222 567887763

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=95.09  E-value=0.13  Score=46.52  Aligned_cols=94  Identities=6%  Similarity=-0.061  Sum_probs=48.9

Q ss_pred             eEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCC-CCCCceE
Q 016413          146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS-PRYSPAT  224 (390)
Q Consensus       146 ~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~  224 (390)
                      .++.+|..+.+++.+...... ......+..-+++||+.+...      ....+.+||+.+.+++.+..... ...-..+
T Consensus        19 ~v~~~d~~tg~~~~~~~~~~~-~~p~~~a~spdg~l~~~~~~~------~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~   91 (347)
T 3hfq_A           19 YQGTLDTTAKTLTNDGLLAAT-QNPTYLALSAKDCLYSVDKED------DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV   91 (347)
T ss_dssp             EEEEEETTTTEEEEEEEEEEC-SCCCCEEECTTCEEEEEEEET------TEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred             EEEEEcCCCCeEEEeeeeecc-CCcceEEEccCCeEEEEEecC------CCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence            477888888888764322211 111212223367788776421      13568899988777766654221 1111223


Q ss_pred             EEE-CC-EEEEEccCCCCCCCCCcceEEe
Q 016413          225 QLW-RG-RLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       225 ~~~-~~-~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      +.. ++ .||+.+..     ...+..|++
T Consensus        92 a~spdg~~l~~~~~~-----~~~v~v~~~  115 (347)
T 3hfq_A           92 AVDEARQLVYSANYH-----KGTAEVMKI  115 (347)
T ss_dssp             EEETTTTEEEEEETT-----TTEEEEEEE
T ss_pred             EECCCCCEEEEEeCC-----CCEEEEEEe
Confidence            322 34 57666532     234566665

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=95.08  E-value=0.24  Score=44.27  Aligned_cols=104  Identities=10%  Similarity=0.062  Sum_probs=54.9

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe---CCEEEEEeceeCCCCCCCCceEEEEEC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD---GRYIYIVSGQYGPQCRGPTSRTFVLDS  204 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd~  204 (390)
                      +++.++.|+.++      .+.+||+.+++...+..+... ...-.+++..   ++.+++.|+.+        ..+.+||+
T Consensus        24 ~g~~lasgs~D~------~v~lwd~~~~~~~~~~~l~gH-~~~V~~v~~~~~~~~~~l~s~s~D--------~~v~iWd~   88 (316)
T 3bg1_A           24 YGTRLATCSSDR------SVKIFDVRNGGQILIADLRGH-EGPVWQVAWAHPMYGNILASCSYD--------RKVIIWRE   88 (316)
T ss_dssp             GGCEEEEEETTT------EEEEEEEETTEEEEEEEEECC-SSCEEEEEECCGGGSSCEEEEETT--------SCEEEECC
T ss_pred             CCCEEEEEeCCC------eEEEEEecCCCcEEEEEEcCC-CccEEEEEeCCCCCCCEEEEEECC--------CEEEEEEC
Confidence            467778888763      477888877654333333221 1112233332   25677777654        34778888


Q ss_pred             CCCCeEeCCCCCCCCCCc-eEEEE-C--CEEEEEccCCCCCCCCCcceEEe
Q 016413          205 ETRKWDSIPPLPSPRYSP-ATQLW-R--GRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       205 ~~~~W~~~~~~p~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      .+..|..+..+....... +++.. +  +.+++.|+.+     ..+..|++
T Consensus        89 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D-----~~i~lwd~  134 (316)
T 3bg1_A           89 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD-----GAISLLTY  134 (316)
T ss_dssp             SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSS-----SCEEEEEE
T ss_pred             CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCC-----CCEEEEec
Confidence            887775543322211112 22222 2  4566666653     35667775

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=95.07  E-value=0.13  Score=46.31  Aligned_cols=103  Identities=6%  Similarity=-0.067  Sum_probs=52.7

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCc--eeecCCCCCCCCCcceEEEE-----eCCEEEEEeceeCCCCCCCCceEE
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVS-----DGRYIYIVSGQYGPQCRGPTSRTF  200 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~~r~~~~~~~-----~~~~iyv~GG~~~~~~~~~~~~v~  200 (390)
                      ++..++.|+.++      .+.+||+.+..  ...+........+.-.+++.     .++.+++.|+.        ...+.
T Consensus       128 ~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~--------d~~i~  193 (357)
T 3i2n_A          128 GAPEIVTGSRDG------TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD--------NGDIK  193 (357)
T ss_dssp             CCCEEEEEETTS------CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET--------TSEEE
T ss_pred             CccEEEEEeCCC------eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc--------CCeEE
Confidence            456777777653      48888987764  33332222111122223331     35667777753        24688


Q ss_pred             EEECCCCCeEeCCCCCCCCCCceEEEE----CCEEEEEccCCCCCCCCCcceEEe
Q 016413          201 VLDSETRKWDSIPPLPSPRYSPATQLW----RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       201 ~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      .||..+..-......  ...-.++...    ++..++.|+.+     ..+..|++
T Consensus       194 i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~  241 (357)
T 3i2n_A          194 LFDLRNMALRWETNI--KNGVCSLEFDRKDISMNKLVATSLE-----GKFHVFDM  241 (357)
T ss_dssp             EEETTTTEEEEEEEC--SSCEEEEEESCSSSSCCEEEEEEST-----TEEEEEEE
T ss_pred             EEECccCceeeecCC--CCceEEEEcCCCCCCCCEEEEECCC-----CeEEEEeC
Confidence            899887653222111  1112223332    45666666643     34667775

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.05  E-value=0.98  Score=46.01  Aligned_cols=160  Identities=11%  Similarity=0.080  Sum_probs=82.5

Q ss_pred             hcccccccCCCCeEECCCCCCcCCC-ceEEEE-CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCC-CC-CCcce
Q 016413           97 ATFADLPAPDLEWEQMPSAPVPRLD-GAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DM-AHSHL  172 (390)
Q Consensus        97 ~~~~~~~~~~~~W~~~~~~~~~R~~-~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~-~~-~r~~~  172 (390)
                      .-++.+++.+.+++.......+... .+++.- ++.||+...        .-+.+||+.+++|......+. +. ...-.
T Consensus       427 ~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~  498 (781)
T 3v9f_A          427 GNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH--------AGVFVIDLASKKVIHHYDTSNSQLLENFVR  498 (781)
T ss_dssp             EEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET--------TEEEEEESSSSSCCEEECTTTSSCSCSCEE
T ss_pred             CCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC--------CceEEEeCCCCeEEecccCcccccccceeE
Confidence            3678889888888776532111111 122222 467877432        238999999998876643321 00 11122


Q ss_pred             EEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC---CCCCCCCceEEE-ECCEEEEEccCCCCCCCCCc-
Q 016413          173 GVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQL-WRGRLHVMGGSKENRHTPGL-  246 (390)
Q Consensus       173 ~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~-  246 (390)
                      ++.. .++.|++-.-         ..-+.+||+.+++++....   ++.... .+++. .++.|++... .      .. 
T Consensus       499 ~i~~d~~g~lWigt~---------~~Gl~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~-~------Glv  561 (781)
T 3v9f_A          499 SIAQDSEGRFWIGTF---------GGGVGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG-E------GLV  561 (781)
T ss_dssp             EEEECTTCCEEEEES---------SSCEEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET-T------EEE
T ss_pred             EEEEcCCCCEEEEEc---------CCCEEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC-C------Cce
Confidence            2222 3567777431         1237889999888877653   221111 12222 2567777642 1      11 


Q ss_pred             ceEEeeeeccccccCCeEEcc---CCCCCCCceeEEEE-CCEEEEEc
Q 016413          247 EHWSIAVKDGKALEKAWRTEI---PIPRGGPHRACFVF-NDRLFVVG  289 (390)
Q Consensus       247 ~~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~-~~~iyv~G  289 (390)
                      .+|+       +.+.+++...   .+|.... .+++.- ++.|++.+
T Consensus       562 ~~~d-------~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t  600 (781)
T 3v9f_A          562 CFPS-------ARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWAST  600 (781)
T ss_dssp             EESC-------TTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEEC
T ss_pred             EEEC-------CCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEc
Confidence            2222       5666665542   3454333 233332 57788775

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.01  E-value=1.2  Score=39.75  Aligned_cols=142  Identities=5%  Similarity=0.059  Sum_probs=64.4

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCC-CCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKD-MAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  205 (390)
                      .+ +++.|+.++      .+.+||+.++....+..+... -...-.+++. -++.+++.|+.++        .+.+||..
T Consensus        24 ~~-~las~~~D~------~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~--------~v~iw~~~   88 (330)
T 2hes_X           24 QG-ILATGSTDR------KIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS--------TVSIWAKE   88 (330)
T ss_dssp             TT-EEEEEESSS------CEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS--------CEEEEEC-
T ss_pred             CC-EEEEEcCCC------EEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC--------cEEEEEcc
Confidence            44 777777663      478888887655443333111 0111223333 2566777776543        36667764


Q ss_pred             CC-----CeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeE
Q 016413          206 TR-----KWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRAC  278 (390)
Q Consensus       206 ~~-----~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~  278 (390)
                      ..     .++.+..+......-..+.+  ++++++.|+.+     ..+..|++.     .....++.+..+.........
T Consensus        89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D-----~~v~iwd~~-----~~~~~~~~~~~~~~h~~~v~~  158 (330)
T 2hes_X           89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD-----KSVWIWETD-----ESGEEYECISVLQEHSQDVKH  158 (330)
T ss_dssp             ------CCCEEEEEEC----CEEEEEECTTSCEEEEEETT-----SCEEEEECC-----TTCCCCEEEEEECCCSSCEEE
T ss_pred             cCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCC-----CEEEEEecc-----CCCCCeEEEEEeccCCCceEE
Confidence            32     22222211111111112222  56666776654     457777751     112334433322211111122


Q ss_pred             EEE--CCEEEEEcCCCCC
Q 016413          279 FVF--NDRLFVVGGQEGD  294 (390)
Q Consensus       279 ~~~--~~~iyv~GG~~~~  294 (390)
                      +..  ++.+++.|+.++.
T Consensus       159 v~~~p~~~~l~s~s~D~~  176 (330)
T 2hes_X          159 VIWHPSEALLASSSYDDT  176 (330)
T ss_dssp             EEECSSSSEEEEEETTSC
T ss_pred             EEECCCCCEEEEEcCCCe
Confidence            222  5677788887653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=94.95  E-value=0.31  Score=43.44  Aligned_cols=132  Identities=8%  Similarity=0.053  Sum_probs=63.2

Q ss_pred             ccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCCC-chhHHHhhhcccccccCCCCe-
Q 016413           32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKG-QDAERFLSATFADLPAPDLEW-  109 (390)
Q Consensus        32 ~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~W-  109 (390)
                      .+.+|+.... ++       .+..||+.+.+..........    .. ++++-.+.. .-....-...++.+|..+.+- 
T Consensus         9 ~~~~~v~~~~-~~-------~v~~~d~~~~~~~~~~~~~~~----~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~   75 (331)
T 3u4y_A            9 SNFGIVVEQH-LR-------RISFFSTDTLEILNQITLGYD----FV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK   75 (331)
T ss_dssp             CCEEEEEEGG-GT-------EEEEEETTTCCEEEEEECCCC----EE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred             CCEEEEEecC-CC-------eEEEEeCcccceeeeEEccCC----cc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence            4677887765 44       788999988877554333221    11 333322221 001111123677788776653 


Q ss_pred             -EECCCCCCcCCCceEEEE--CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-CC-EEEEE
Q 016413          110 -EQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GR-YIYIV  184 (390)
Q Consensus       110 -~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~~-~iyv~  184 (390)
                       ..+.....++  ++++..  +..|| .+...+.   ...+.+||+.+.+-...-+...    ....++.. ++ .||+.
T Consensus        76 ~~~~~~~~~~~--~~~~~s~dg~~l~-~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~----~~~~~~~spdg~~l~~~  145 (331)
T 3u4y_A           76 VVAIQEGQSSM--ADVDITPDDQFAV-TVTGLNH---PFNMQSYSFLKNKFISTIPIPY----DAVGIAISPNGNGLILI  145 (331)
T ss_dssp             EEEEEECSSCC--CCEEECTTSSEEE-ECCCSSS---SCEEEEEETTTTEEEEEEECCT----TEEEEEECTTSSCEEEE
T ss_pred             EEecccCCCCc--cceEECCCCCEEE-EecCCCC---cccEEEEECCCCCeEEEEECCC----CccceEECCCCCEEEEE
Confidence             2221111221  213322  33566 3322211   1269999998887654322221    12344443 34 57777


Q ss_pred             ec
Q 016413          185 SG  186 (390)
Q Consensus       185 GG  186 (390)
                      +.
T Consensus       146 ~~  147 (331)
T 3u4y_A          146 DR  147 (331)
T ss_dssp             EE
T ss_pred             ec
Confidence            54

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=94.91  E-value=0.58  Score=41.21  Aligned_cols=104  Identities=9%  Similarity=0.070  Sum_probs=54.3

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe---CCEEEEEeceeCCCCCCCCceEEEEEC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD---GRYIYIVSGQYGPQCRGPTSRTFVLDS  204 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd~  204 (390)
                      +++.++.|+.++      .+.+||+.+++...+..+... ...-.+++..   ++.+++.|+.+        ..+.++|.
T Consensus        20 ~g~~las~s~D~------~v~iw~~~~~~~~~~~~l~gH-~~~V~~v~~s~~~~g~~l~s~s~D--------~~v~iWd~   84 (297)
T 2pm7_B           20 YGKRMATCSSDK------TIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYD--------GKVMIWKE   84 (297)
T ss_dssp             TSSEEEEEETTS------CEEEEEBCSSCBCCCEEECCC-SSCEEEEEECCGGGCSEEEEEETT--------TEEEEEEB
T ss_pred             CCCEEEEEeCCC------EEEEEecCCCCcEEEEEEccc-cCCeEEEEecCCCcCCEEEEEcCC--------CEEEEEEc
Confidence            567788888764      377788765544333333221 1112233332   25677777653        45778888


Q ss_pred             CCCCeEeCCCCCCCCCCceEEEEC----CEEEEEccCCCCCCCCCcceEEe
Q 016413          205 ETRKWDSIPPLPSPRYSPATQLWR----GRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       205 ~~~~W~~~~~~p~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      .+..|..+..+.........+...    +.+++.|+.+     ..+..|++
T Consensus        85 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d-----~~v~~wd~  130 (297)
T 2pm7_B           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD-----GKVSVVEF  130 (297)
T ss_dssp             SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEEB
T ss_pred             CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC-----CcEEEEEe
Confidence            877776543322211222222221    4566666653     34566664

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=94.75  E-value=1  Score=40.79  Aligned_cols=100  Identities=7%  Similarity=0.111  Sum_probs=50.7

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe---CCEEEEEeceeCCCCCCCCceEEEEEC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD---GRYIYIVSGQYGPQCRGPTSRTFVLDS  204 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd~  204 (390)
                      ++..++.|+.++      .+..+|+.+.+-...  +... ...-.++...   ++.+++.|+.+        ..+..||.
T Consensus       165 ~~~~l~t~s~D~------~v~lwd~~~~~~~~~--~~~h-~~~v~~~~~~~~~~g~~l~sgs~D--------g~v~~wd~  227 (354)
T 2pbi_B          165 SDMQILTASGDG------TCALWDVESGQLLQS--FHGH-GADVLCLDLAPSETGNTFVSGGCD--------KKAMVWDM  227 (354)
T ss_dssp             SSSEEEEEETTS------EEEEEETTTCCEEEE--EECC-SSCEEEEEECCCSSCCEEEEEETT--------SCEEEEET
T ss_pred             CCCEEEEEeCCC------cEEEEeCCCCeEEEE--EcCC-CCCeEEEEEEeCCCCCEEEEEeCC--------CeEEEEEC
Confidence            344566666553      588899887764321  1110 0111122221   35677777754        34778898


Q ss_pred             CCCCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          205 ETRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       205 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      .+.+....-  .........+.+  ++.+++.|+.+     ..+..|++
T Consensus       228 ~~~~~~~~~--~~h~~~v~~v~~~p~~~~l~s~s~D-----~~v~lwd~  269 (354)
T 2pbi_B          228 RSGQCVQAF--ETHESDVNSVRYYPSGDAFASGSDD-----ATCRLYDL  269 (354)
T ss_dssp             TTCCEEEEE--CCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEET
T ss_pred             CCCcEEEEe--cCCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEEC
Confidence            876643321  111111122222  45677777654     35777775

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=94.68  E-value=0.46  Score=43.40  Aligned_cols=21  Identities=14%  Similarity=-0.001  Sum_probs=14.6

Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCCc
Q 016413           34 FMWASSSSSFSSSSAHLSVASNWALEKSG   62 (390)
Q Consensus        34 ~l~~~GG~~~~~~~~~~~~~~~~d~~~~~   62 (390)
                      .+++.|+. ++       .+..||..+..
T Consensus        27 ~~l~s~~~-dg-------~i~iw~~~~~~   47 (397)
T 1sq9_A           27 SFTVSCSG-DG-------YLKVWDNKLLD   47 (397)
T ss_dssp             SEEEEEET-TS-------EEEEEESBCCT
T ss_pred             CeEEEEcC-CC-------EEEEEECCCcc
Confidence            56677776 66       77788876655

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=94.66  E-value=0.39  Score=43.09  Aligned_cols=65  Identities=15%  Similarity=0.086  Sum_probs=32.0

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCCC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  207 (390)
                      +.+++.|+.++      .+.++|..+.+......+... ...-.++.. .++.+.+.|+.+        ..+..+|..+.
T Consensus        48 ~~~l~tgs~D~------~v~vW~~~~~~~~~~~~l~gh-~~~v~~~~~~~~~~~l~s~s~D--------~~i~lWd~~~~  112 (321)
T 3ow8_A           48 SETVVTGSLDD------LVKVWKWRDERLDLQWSLEGH-QLGVVSVDISHTLPIAASSSLD--------AHIRLWDLENG  112 (321)
T ss_dssp             -CEEEEEETTS------CEEEEEEETTEEEEEEEECCC-SSCEEEEEECSSSSEEEEEETT--------SEEEEEETTTT
T ss_pred             CCEEEEEcCCC------CEEEEECCCCCeeeeeeeccC-CCCEEEEEECCCCCEEEEEeCC--------CcEEEEECCCC
Confidence            45788888774      255555544443322122210 111122222 245566666543        45778888776


Q ss_pred             C
Q 016413          208 K  208 (390)
Q Consensus       208 ~  208 (390)
                      +
T Consensus       113 ~  113 (321)
T 3ow8_A          113 K  113 (321)
T ss_dssp             E
T ss_pred             C
Confidence            4

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=94.66  E-value=0.28  Score=44.75  Aligned_cols=102  Identities=14%  Similarity=0.185  Sum_probs=52.8

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe--CCEEEEEeceeCCCCCCCCceEEEEECC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~  205 (390)
                      +++.++.|+.++      .+.+||+.+.+-...  +... ...-.+++..  ++.+++.++.+        ..+.+||..
T Consensus       150 dg~~l~sgs~dg------~v~iwd~~~~~~~~~--~~~h-~~~v~~v~~s~~~~~~~~s~~~d--------g~v~~wd~~  212 (357)
T 4g56_B          150 DGTQAVSGGKDF------SVKVWDLSQKAVLKS--YNAH-SSEVNCVAACPGKDTIFLSCGED--------GRILLWDTR  212 (357)
T ss_dssp             SSSEEEEEETTS------CEEEEETTTTEEEEE--ECCC-SSCEEEEEECTTCSSCEEEEETT--------SCEEECCTT
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEE--EcCC-CCCEEEEEEccCCCceeeeeccC--------CceEEEECC
Confidence            567778887764      388899887764332  2211 1112233332  33467777643        347778887


Q ss_pred             CCCeEeCCCCCCCCCCceEEEE---CCEEEEEccCCCCCCCCCcceEEe
Q 016413          206 TRKWDSIPPLPSPRYSPATQLW---RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       206 ~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      +.+-...............+..   ++.+++.|+.+     ..+..|++
T Consensus       213 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d-----~~i~~wd~  256 (357)
T 4g56_B          213 KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET-----GNVSLVNI  256 (357)
T ss_dssp             SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS-----SCEEEEES
T ss_pred             CCceeeeeeeccccccccchhhhhcccceEEEeecc-----cceeEEEC
Confidence            6543222222222222222332   45677777654     34667774

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=94.65  E-value=0.15  Score=45.58  Aligned_cols=132  Identities=10%  Similarity=0.012  Sum_probs=65.2

Q ss_pred             hcccccccCCCCeEECCCCCCcCCCceEEEE-CC-EEEEEecCCCCCCCCCeEEEEeCCCCce-ee-cCCCCCCCCCcce
Q 016413           97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KN-LFYVFAGYGSLDYVHSHVDVYNFTDNKW-VD-RFDMPKDMAHSHL  172 (390)
Q Consensus        97 ~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W-~~-~~~l~~~~~r~~~  172 (390)
                      ..+..+|..+.+....-..+.  ....++.. ++ .+|+.+..+      ..++++|+.+.+- .. +.....  ++...
T Consensus        20 ~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~--~~~~~   89 (331)
T 3u4y_A           20 RRISFFSTDTLEILNQITLGY--DFVDTAITSDCSNVVVTSDFC------QTLVQIETQLEPPKVVAIQEGQS--SMADV   89 (331)
T ss_dssp             TEEEEEETTTCCEEEEEECCC--CEEEEEECSSSCEEEEEESTT------CEEEEEECSSSSCEEEEEEECSS--CCCCE
T ss_pred             CeEEEEeCcccceeeeEEccC--CcceEEEcCCCCEEEEEeCCC------CeEEEEECCCCceeEEecccCCC--Cccce
Confidence            367778877776644333221  11223322 34 577776533      3699999988774 22 222111  12112


Q ss_pred             EEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEE-CC-EEEEEccCCCCCCCCC-cceE
Q 016413          173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RG-RLHVMGGSKENRHTPG-LEHW  249 (390)
Q Consensus       173 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~-~~~~  249 (390)
                      +....+..|| .+...+     ....+.+||+.+.+-...  ++.....+.++.. ++ .||+.+...     .. +..|
T Consensus        90 ~~s~dg~~l~-~~~~~~-----~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~-----~~~i~~~  156 (331)
T 3u4y_A           90 DITPDDQFAV-TVTGLN-----HPFNMQSYSFLKNKFIST--IPIPYDAVGIAISPNGNGLILIDRSS-----ANTVRRF  156 (331)
T ss_dssp             EECTTSSEEE-ECCCSS-----SSCEEEEEETTTTEEEEE--EECCTTEEEEEECTTSSCEEEEEETT-----TTEEEEE
T ss_pred             EECCCCCEEE-EecCCC-----CcccEEEEECCCCCeEEE--EECCCCccceEECCCCCEEEEEecCC-----CceEEEE
Confidence            2222345676 332110     123799999988765432  2222222334333 33 577776532     24 5666


Q ss_pred             Ee
Q 016413          250 SI  251 (390)
Q Consensus       250 ~~  251 (390)
                      ++
T Consensus       157 ~~  158 (331)
T 3u4y_A          157 KI  158 (331)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=94.58  E-value=0.43  Score=43.56  Aligned_cols=145  Identities=4%  Similarity=-0.155  Sum_probs=66.3

Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCC-CchhHHHhhhcccccccCCCCeEEC
Q 016413           34 FMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKK-GQDAERFLSATFADLPAPDLEWEQM  112 (390)
Q Consensus        34 ~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~  112 (390)
                      .+++.|+. ++       .+..||..+............  ...-.+++..... ..-.....+..+..+|........+
T Consensus        87 ~~l~s~~~-dg-------~i~iwd~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  156 (383)
T 3ei3_B           87 TTVAVGSK-GG-------DIILWDYDVQNKTSFIQGMGP--GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVF  156 (383)
T ss_dssp             TEEEEEEB-TS-------CEEEEETTSTTCEEEECCCST--TCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEE
T ss_pred             CEEEEEcC-CC-------eEEEEeCCCcccceeeecCCc--CCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEE
Confidence            45666655 55       677888877766554332111  0111222222211 0000001123455666655444433


Q ss_pred             CCCCCcCC-CceEEEE-CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-CCE-EEEEecee
Q 016413          113 PSAPVPRL-DGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRY-IYIVSGQY  188 (390)
Q Consensus       113 ~~~~~~R~-~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~~~-iyv~GG~~  188 (390)
                      ........ -.+++.. ++++++.|+.++      .+..||+....-..+....    ..-.+++.. ++. +++.|+.+
T Consensus       157 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~h~----~~v~~~~~~~~~~~~l~s~~~d  226 (383)
T 3ei3_B          157 AKTDSWDYWYCCVDVSVSRQMLATGDSTG------RLLLLGLDGHEIFKEKLHK----AKVTHAEFNPRCDWLMATSSVD  226 (383)
T ss_dssp             ECCCCSSCCEEEEEEETTTTEEEEEETTS------EEEEEETTSCEEEEEECSS----SCEEEEEECSSCTTEEEEEETT
T ss_pred             eccCCCCCCeEEEEECCCCCEEEEECCCC------CEEEEECCCCEEEEeccCC----CcEEEEEECCCCCCEEEEEeCC
Confidence            22221111 1222222 566777777653      5888998654433332211    112233332 343 77777642


Q ss_pred             CCCCCCCCceEEEEECCC
Q 016413          189 GPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       189 ~~~~~~~~~~v~~yd~~~  206 (390)
                              ..+.+||+.+
T Consensus       227 --------~~i~iwd~~~  236 (383)
T 3ei3_B          227 --------ATVKLWDLRN  236 (383)
T ss_dssp             --------SEEEEEEGGG
T ss_pred             --------CEEEEEeCCC
Confidence                    4577888776

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=94.56  E-value=3.8  Score=41.67  Aligned_cols=141  Identities=8%  Similarity=0.052  Sum_probs=71.1

Q ss_pred             eeeeeccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccCCCCeEECCC-CCCcCCCceEE-EECC
Q 016413           52 VASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPS-APVPRLDGAAI-QIKN  129 (390)
Q Consensus        52 ~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~R~~~~~~-~~~~  129 (390)
                      .+.+||+.+.+...+......+... -..++. ...+.---. ....++.|+..+.++..+.. ++....-.++. .-++
T Consensus       108 Gl~~yd~~~~~f~~~~~~~~~~~~~-i~~i~~-d~~g~lwi~-t~~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g  184 (795)
T 4a2l_A          108 GLSRYDEEKDIFQNFFYEKNGKHLQ-VNGIEE-ISPEQLLIS-TPEGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGD  184 (795)
T ss_dssp             CEEEEETTTTEEEEECCEETTEECC-CCEEEE-EETTEEEEE-ETTEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETT
T ss_pred             chheeCCCCCeEEeccccccCCCce-EEEEEE-CCCCCEEEE-ECCceEEEECCCCEEEeccCCCCCCcceEEEEECCCC
Confidence            4678998888877765422210000 111111 111111000 11257788887777665433 11111011222 2378


Q ss_pred             EEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEE-EeCCEEEEEeceeCCCCCCCCceEEEEECCCCC
Q 016413          130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV-SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK  208 (390)
Q Consensus       130 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  208 (390)
                      .|||.. ..      .-+.+||+.++++......+.  ...-.++. ..++.|+|..-         ..-+++||+.+++
T Consensus       185 ~lwigt-~~------~Gl~~~~~~~~~~~~~~~~~~--~~~i~~i~~d~~g~lwigt~---------~~Gl~~~~~~~~~  246 (795)
T 4a2l_A          185 QIYIGT-ST------DGLYTYSITQKTFEKVIPILG--TKQIQAILQQSPTRIWVATE---------GAGLFLINPKTKE  246 (795)
T ss_dssp             EEEEEE-SS------SCEEEEETTTCCEEECC------CCCEEEEEEEETTEEEEEEB---------SSCEEEEETTTTE
T ss_pred             CEEEEE-CC------CCEEEEeCCCCeEEEecCCCC--CCeeEEEEEcCCCCEEEEEC---------CCCeEEEeCCCCe
Confidence            888832 11      138899999999887643221  11122222 34678887431         1238899999988


Q ss_pred             eEeCC
Q 016413          209 WDSIP  213 (390)
Q Consensus       209 W~~~~  213 (390)
                      ++...
T Consensus       247 ~~~~~  251 (795)
T 4a2l_A          247 IKNYL  251 (795)
T ss_dssp             EEEEC
T ss_pred             EEEee
Confidence            87764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=94.55  E-value=0.78  Score=41.49  Aligned_cols=35  Identities=6%  Similarity=0.060  Sum_probs=19.5

Q ss_pred             ccEEEEecCCCCCCCccccceeeeeccCCCceEeecC
Q 016413           32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPH   68 (390)
Q Consensus        32 ~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~   68 (390)
                      ++..+.+|.+..+.+..+  .++.+|+.+.+...+..
T Consensus        12 ~~~~~~vg~y~~~~~~~i--~~~~~d~~~g~~~~~~~   46 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGI--YTFRFNEETGESLPLSD   46 (361)
T ss_dssp             GEEEEEEEECCSSSCCEE--EEEEEETTTCCEEEEEE
T ss_pred             CceEEEEEeccCCCCCCE--EEEEEeCCCCCEEEeec
Confidence            445566787743311222  45566777777766544

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=94.51  E-value=0.41  Score=42.93  Aligned_cols=105  Identities=7%  Similarity=-0.002  Sum_probs=52.2

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-CCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      ++++++.|+.++      .+.+||..+.+-..  .+... ...-.+++.. ++..++.|+.        -..+.+||..+
T Consensus        43 ~~~~l~~~~~dg------~i~vwd~~~~~~~~--~~~~h-~~~v~~~~~~~~~~~l~s~~~--------dg~i~iwd~~~  105 (369)
T 3zwl_B           43 EGDLLFSCSKDS------SASVWYSLNGERLG--TLDGH-TGTIWSIDVDCFTKYCVTGSA--------DYSIKLWDVSN  105 (369)
T ss_dssp             TSCEEEEEESSS------CEEEEETTTCCEEE--EECCC-SSCEEEEEECTTSSEEEEEET--------TTEEEEEETTT
T ss_pred             CCCEEEEEeCCC------EEEEEeCCCchhhh--hhhhc-CCcEEEEEEcCCCCEEEEEeC--------CCeEEEEECCC
Confidence            556777777653      48888987765432  22211 1112223332 4566667654        24588889887


Q ss_pred             CCeEeCCCCCCCCCCceEEE-ECCEEEEEccCCCCCCCCCcceEEe
Q 016413          207 RKWDSIPPLPSPRYSPATQL-WRGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      .+-...-..+.  .-.++.. -++..++.++.........+..|++
T Consensus       106 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~  149 (369)
T 3zwl_B          106 GQCVATWKSPV--PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEI  149 (369)
T ss_dssp             CCEEEEEECSS--CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEE
T ss_pred             CcEEEEeecCC--CeEEEEEccCCCEEEEecCCccCCCCEEEEEEe
Confidence            65433322111  1112222 2455555555432222345667765

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=94.45  E-value=1.3  Score=45.14  Aligned_cols=203  Identities=10%  Similarity=0.020  Sum_probs=101.7

Q ss_pred             eeeeeccCCCceEeecCCCCCccccccceEEEecC-CCchhHHHhhhcccccccCCCCeEECCCCCC-c--CCCceEEEE
Q 016413           52 VASNWALEKSGVVVIPHVNATKIDRQRESVAVIDK-KGQDAERFLSATFADLPAPDLEWEQMPSAPV-P--RLDGAAIQI  127 (390)
Q Consensus        52 ~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~-~--R~~~~~~~~  127 (390)
                      -+.+||+.++++..+.....+   . ..-.++..+ .+.---... .-++.|++.+.+|+.....+. .  .........
T Consensus       428 Gl~~~~~~~~~~~~~~~~~~~---~-~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  502 (781)
T 3v9f_A          428 NISYYNTRLKKFQIIELEKNE---L-LDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQ  502 (781)
T ss_dssp             EEEEECSSSCEEEECCSTTTC---C-CCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEE
T ss_pred             CEEEEcCCCCcEEEeccCCCC---C-CeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEE
Confidence            577889888888777542111   0 111122222 221110111 367888888888766543221 1  111111222


Q ss_pred             --CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCC-CCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceE-EEE
Q 016413          128 --KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP-KDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRT-FVL  202 (390)
Q Consensus       128 --~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~-~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v-~~y  202 (390)
                        ++.|++..-.       .-+.+||+.+++++....-. .+ ...-.++.. .++.|++-..          .-+ .+|
T Consensus       503 d~~g~lWigt~~-------~Gl~~~~~~~~~~~~~~~~~~l~-~~~i~~i~~d~~g~lWi~T~----------~Glv~~~  564 (781)
T 3v9f_A          503 DSEGRFWIGTFG-------GGVGIYTPDMQLVRKFNQYEGFC-SNTINQIYRSSKGQMWLATG----------EGLVCFP  564 (781)
T ss_dssp             CTTCCEEEEESS-------SCEEEECTTCCEEEEECTTTTCS-CSCEEEEEECTTSCEEEEET----------TEEEEES
T ss_pred             cCCCCEEEEEcC-------CCEEEEeCCCCeEEEccCCCCCC-CCeeEEEEECCCCCEEEEEC----------CCceEEE
Confidence              4677774321       12888999999888764311 11 111223333 3577777531          235 889


Q ss_pred             ECCCCCeEeCC---CCCCCCCCceEEEE-CCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEcc---CCCCCCCc
Q 016413          203 DSETRKWDSIP---PLPSPRYSPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI---PIPRGGPH  275 (390)
Q Consensus       203 d~~~~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~---~~p~~~~~  275 (390)
                      |+++++++...   .+|.... .+++.. ++.|++.+..       .+.+|+       |.+.+++...   .++...+.
T Consensus       565 d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~~-------Gl~~~~-------~~~~~~~~~~~~dGl~~~~f~  629 (781)
T 3v9f_A          565 SARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTNT-------GISCYI-------TSKKCFYTYDHSNNIPQGSFI  629 (781)
T ss_dssp             CTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECSS-------CEEEEE-------TTTTEEEEECGGGTCCSSCEE
T ss_pred             CCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcCC-------ceEEEE-------CCCCceEEecccCCccccccc
Confidence            99888877664   2443322 233333 5778887521       234444       5666665542   34444332


Q ss_pred             e-eEEEE-CCEEEEEcCCCC
Q 016413          276 R-ACFVF-NDRLFVVGGQEG  293 (390)
Q Consensus       276 ~-~~~~~-~~~iyv~GG~~~  293 (390)
                      . +++.. +++| .+||.++
T Consensus       630 ~~~~~~~~~G~l-~~g~~~G  648 (781)
T 3v9f_A          630 SGCVTKDHNGLI-YFGSING  648 (781)
T ss_dssp             EEEEEECTTSCE-EEEETTE
T ss_pred             cCceEECCCCEE-EEECCCc
Confidence            2 33333 4555 5566554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=94.40  E-value=1.2  Score=39.84  Aligned_cols=65  Identities=6%  Similarity=-0.042  Sum_probs=36.2

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeec-CCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDR-FDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  205 (390)
                      ++.+++.|+.++      .+.+||+.+.+-... ..+... ...-.+++. -++..++.|+.+        ..+.+||..
T Consensus       127 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~  191 (366)
T 3k26_A          127 DPNLLLSVSKDH------ALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDLLGEKIMSCGMD--------HSLKLWRIN  191 (366)
T ss_dssp             CTTEEEEEETTS------CEEEEETTTTEEEEEECSTTSC-SSCEEEEEECTTSSEEEEEETT--------SCEEEEESC
T ss_pred             CCCEEEEEeCCC------eEEEEEeecCeEEEEecccccc-cCceeEEEECCCCCEEEEecCC--------CCEEEEECC
Confidence            557788887763      488899987764332 111211 112223333 245566676643        347788877


Q ss_pred             CC
Q 016413          206 TR  207 (390)
Q Consensus       206 ~~  207 (390)
                      +.
T Consensus       192 ~~  193 (366)
T 3k26_A          192 SK  193 (366)
T ss_dssp             SH
T ss_pred             CC
Confidence            54

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=94.30  E-value=2.4  Score=36.67  Aligned_cols=95  Identities=12%  Similarity=0.055  Sum_probs=48.9

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCC-C-CCCcceEEEE--eCCEEEEEeceeCCCCCCCCceEEEEE
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-D-MAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLD  203 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~-~-~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd  203 (390)
                      ++.+||....+      ..+.+||+....-..+..... + ....-.++++  .++.||+.+..       ....+.+||
T Consensus        40 ~g~l~v~~~~~------~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~-------~~~~i~~~d  106 (286)
T 1q7f_A           40 QNDIIVADTNN------HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-------PTHQIQIYN  106 (286)
T ss_dssp             TCCEEEEEGGG------TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-------GGCEEEEEC
T ss_pred             CCCEEEEECCC------CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC-------CCCEEEEEC
Confidence            46788876432      358899988654443332110 0 0112334454  37899998631       135688898


Q ss_pred             CCCCCeEeCCCCCCCCCCceEEE-ECCEEEEEcc
Q 016413          204 SETRKWDSIPPLPSPRYSPATQL-WRGRLHVMGG  236 (390)
Q Consensus       204 ~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG  236 (390)
                      +....-..+.... ...-..+++ -+++|||...
T Consensus       107 ~~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~  139 (286)
T 1q7f_A          107 QYGQFVRKFGATI-LQHPRGVTVDNKGRIIVVEC  139 (286)
T ss_dssp             TTSCEEEEECTTT-CSCEEEEEECTTSCEEEEET
T ss_pred             CCCcEEEEecCcc-CCCceEEEEeCCCCEEEEEC
Confidence            6554333332111 111123333 2567888754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=94.27  E-value=0.79  Score=42.86  Aligned_cols=148  Identities=7%  Similarity=-0.088  Sum_probs=66.9

Q ss_pred             ccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCCC-chhHHHhhhcccccccCCCCeE
Q 016413           32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKG-QDAERFLSATFADLPAPDLEWE  110 (390)
Q Consensus        32 ~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~W~  110 (390)
                      ++.+++.|+. +|       .+..||..+..-..+-.....  ...-.+++.....+ .-.....+..+..+|..++...
T Consensus       131 ~~~~lasGs~-dg-------~i~lWd~~~~~~~~~~~~~gH--~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~  200 (435)
T 4e54_B          131 HPSTVAVGSK-GG-------DIMLWNFGIKDKPTFIKGIGA--GGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR  200 (435)
T ss_dssp             CTTCEEEEET-TS-------CEEEECSSCCSCCEEECCCSS--SCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred             CCCEEEEEeC-CC-------EEEEEECCCCCceeEEEccCC--CCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence            4557777777 66       677888766654332222111  01112223221111 0000011224555665554433


Q ss_pred             ECCCCCCcCC-CceEEEE-CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe--CCEEEEEec
Q 016413          111 QMPSAPVPRL-DGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSG  186 (390)
Q Consensus       111 ~~~~~~~~R~-~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~--~~~iyv~GG  186 (390)
                      .+........ ..++... ++++++.|+.++      .+..+|..++.   +..+... ...-.+++..  +..+++.|+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg------~i~~wd~~~~~---~~~~~~h-~~~v~~v~~~p~~~~~~~s~s  270 (435)
T 4e54_B          201 VFASSDTINIWFCSLDVSASSRMVVTGDNVG------NVILLNMDGKE---LWNLRMH-KKKVTHVALNPCCDWFLATAS  270 (435)
T ss_dssp             EEECCSSCSCCCCCEEEETTTTEEEEECSSS------BEEEEESSSCB---CCCSBCC-SSCEEEEEECTTCSSEEEEEE
T ss_pred             EEeccCCCCccEEEEEECCCCCEEEEEeCCC------cEeeeccCcce---eEEEecc-cceEEeeeecCCCceEEEEec
Confidence            3322221111 1223222 567888888664      48888887643   2222210 0111223332  345777776


Q ss_pred             eeCCCCCCCCceEEEEECCCC
Q 016413          187 QYGPQCRGPTSRTFVLDSETR  207 (390)
Q Consensus       187 ~~~~~~~~~~~~v~~yd~~~~  207 (390)
                      .++        .+.+||..+.
T Consensus       271 ~d~--------~v~iwd~~~~  283 (435)
T 4e54_B          271 VDQ--------TVKIWDLRQV  283 (435)
T ss_dssp             TTS--------BCCEEETTTC
T ss_pred             Ccc--------eeeEEecccc
Confidence            543        3556787654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=94.20  E-value=2.5  Score=36.51  Aligned_cols=119  Identities=8%  Similarity=-0.004  Sum_probs=58.8

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEE-ECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQ-IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS  176 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~  176 (390)
                      .+..+|+. .+............-++++. -++.+|+.....      ..+.+||+. .+...+. ++.. ...-.+++.
T Consensus        37 ~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~~-g~~~~~~-~~~~-~~~~~~i~~  106 (299)
T 2z2n_A           37 MISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAA------NKIGRITKK-GIIKEYT-LPNP-DSAPYGITE  106 (299)
T ss_dssp             EEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTT------TEEEEECTT-SCEEEEE-CSST-TCCEEEEEE
T ss_pred             cEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCC------CeEEEECCC-CcEEEEe-CCCc-CCCceeeEE
Confidence            56677766 55554321111111122222 256788875422      358899986 4454432 2211 122334444


Q ss_pred             e-CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEE-CCEEEEEc
Q 016413          177 D-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMG  235 (390)
Q Consensus       177 ~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~G  235 (390)
                      . ++.||+....        ...+.+||+ +.+............-..++.. ++++|+..
T Consensus       107 ~~~g~l~v~~~~--------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~  158 (299)
T 2z2n_A          107 GPNGDIWFTEMN--------GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTE  158 (299)
T ss_dssp             CTTSCEEEEETT--------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEE
T ss_pred             CCCCCEEEEecC--------CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEe
Confidence            3 5788887531        356888998 5555443211111122233333 56788864

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=94.12  E-value=0.9  Score=42.19  Aligned_cols=65  Identities=9%  Similarity=-0.005  Sum_probs=35.1

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      ++..++.|+.++      .+.+||+.+..-...  +... ...-..+.. .++.+++.|+.+        ..+.+||..+
T Consensus       203 ~~~~l~s~s~D~------~i~~wd~~~~~~~~~--~~~h-~~~v~~~~~~~~g~~l~s~s~D--------~~v~vwd~~~  265 (410)
T 1vyh_C          203 NGDHIVSASRDK------TIKMWEVQTGYCVKT--FTGH-REWVRMVRPNQDGTLIASCSND--------QTVRVWVVAT  265 (410)
T ss_dssp             SSSEEEEEETTS------EEEEEETTTCCEEEE--EECC-SSCEEEEEECTTSSEEEEEETT--------SCEEEEETTT
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEE--EeCC-CccEEEEEECCCCCEEEEEcCC--------CeEEEEECCC
Confidence            456777787663      588899887653221  1110 011112222 356677777643        3366777766


Q ss_pred             CCe
Q 016413          207 RKW  209 (390)
Q Consensus       207 ~~W  209 (390)
                      ...
T Consensus       266 ~~~  268 (410)
T 1vyh_C          266 KEC  268 (410)
T ss_dssp             CCE
T ss_pred             Cce
Confidence            543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=94.06  E-value=0.38  Score=44.43  Aligned_cols=104  Identities=12%  Similarity=-0.031  Sum_probs=52.5

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceee-----cCCCCCCCCCcceEEEEe-CC-EEEEEeceeCCCCCCCCceEE
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD-----RFDMPKDMAHSHLGVVSD-GR-YIYIVSGQYGPQCRGPTSRTF  200 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-----~~~l~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~v~  200 (390)
                      ++.+++.|+.++      .+.+||..++....     +..+... ...-.+++.. ++ .+++.|+.+        ..+.
T Consensus        93 ~~~~l~s~s~dg------~v~vw~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~l~s~~~d--------g~i~  157 (402)
T 2aq5_A           93 NDNVIASGSEDC------TVMVWEIPDGGLVLPLREPVITLEGH-TKRVGIVAWHPTAQNVLLSAGCD--------NVIL  157 (402)
T ss_dssp             CTTEEEEEETTS------EEEEEECCTTCCSSCBCSCSEEEECC-SSCEEEEEECSSBTTEEEEEETT--------SCEE
T ss_pred             CCCEEEEEeCCC------eEEEEEccCCCCccccCCceEEecCC-CCeEEEEEECcCCCCEEEEEcCC--------CEEE
Confidence            567888887663      48888888775421     1111111 1112223332 32 477777643        3478


Q ss_pred             EEECCCCCeEeCCC-CCCCCCCceEEEE-CCEEEEEccCCCCCCCCCcceEEe
Q 016413          201 VLDSETRKWDSIPP-LPSPRYSPATQLW-RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       201 ~yd~~~~~W~~~~~-~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      +||..+.+....-. ......-.+++.. ++.+++.|+.+     ..+..|++
T Consensus       158 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~  205 (402)
T 2aq5_A          158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-----KRVRVIEP  205 (402)
T ss_dssp             EEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-----SEEEEEET
T ss_pred             EEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC-----CcEEEEeC
Confidence            89988765432211 1111111222222 56666666643     35677774

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=94.00  E-value=0.6  Score=42.57  Aligned_cols=62  Identities=15%  Similarity=0.176  Sum_probs=32.3

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-C-CEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-G-RYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +.+++.|+.++      .+..||+.+.+-..  .+... ...-.+++.. + ..+++.|+.+        ..+..||..+
T Consensus       156 ~~~~~~~~~~~------~v~~~d~~~~~~~~--~~~~~-~~~v~~~~~~~~~~~ll~~~~~d--------g~i~i~d~~~  218 (408)
T 4a11_B          156 HCLVAVGTRGP------KVQLCDLKSGSCSH--ILQGH-RQEILAVSWSPRYDYILATASAD--------SRVKLWDVRR  218 (408)
T ss_dssp             CCEEEEEESSS------SEEEEESSSSCCCE--EECCC-CSCEEEEEECSSCTTEEEEEETT--------SCEEEEETTC
T ss_pred             CcEEEEEcCCC------eEEEEeCCCcceee--eecCC-CCcEEEEEECCCCCcEEEEEcCC--------CcEEEEECCC
Confidence            34777777653      48889987654322  12111 1112223332 2 3377777643        3477788765


Q ss_pred             C
Q 016413          207 R  207 (390)
Q Consensus       207 ~  207 (390)
                      .
T Consensus       219 ~  219 (408)
T 4a11_B          219 A  219 (408)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=93.96  E-value=3  Score=36.53  Aligned_cols=31  Identities=13%  Similarity=0.044  Sum_probs=21.3

Q ss_pred             CCEEEEEcCCCCCCCcceeeEEeeeEEEeecCc-cceeeccCCC
Q 016413          347 NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDS-LVIIYHYRPP  389 (390)
Q Consensus       347 ~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~-~~W~~v~~~P  389 (390)
                      ++++++.||.++.            |.+||+.+ +.|..+..++
T Consensus       317 ~~~~l~s~~~dg~------------v~iw~~~~~~~~~~~~~~~  348 (351)
T 3f3f_A          317 TGTILSSAGDDGK------------VRLWKATYSNEFKCMSVIT  348 (351)
T ss_dssp             SSCCEEEEETTSC------------EEEEEECTTSCEEEEEEEC
T ss_pred             CCCEEEEecCCCc------------EEEEecCcCcchhheeehc
Confidence            6778888886644            77888776 4777766543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=93.84  E-value=0.64  Score=45.32  Aligned_cols=24  Identities=0%  Similarity=-0.079  Sum_probs=17.0

Q ss_pred             ccEEEEecCCCCCCCccccceeeeeccCCCce
Q 016413           32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGV   63 (390)
Q Consensus        32 ~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W   63 (390)
                      ++.+|+.+.. ++       ++..+|..+.+-
T Consensus       148 ~~~~~vs~~~-d~-------~V~v~D~~t~~~  171 (543)
T 1nir_A          148 PNLFSVTLRD-AG-------QIALVDGDSKKI  171 (543)
T ss_dssp             GGEEEEEEGG-GT-------EEEEEETTTCCE
T ss_pred             CCEEEEEEcC-CC-------eEEEEECCCceE
Confidence            6778877755 44       677888877654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=93.83  E-value=3.3  Score=36.55  Aligned_cols=93  Identities=5%  Similarity=-0.013  Sum_probs=46.7

Q ss_pred             hccccccc-CCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCc-------eeecCCCCCCCC
Q 016413           97 ATFADLPA-PDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK-------WVDRFDMPKDMA  168 (390)
Q Consensus        97 ~~~~~~~~-~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~-------W~~~~~l~~~~~  168 (390)
                      ..+..++. .+.+-..+...+....-.++....+.+++.|+.++      .+..||+.+..       .+.+..+..  .
T Consensus        79 g~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~--~  150 (342)
T 1yfq_A           79 GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG------LIEVIDPRNYGDGVIAVKNLNSNNTKV--K  150 (342)
T ss_dssp             SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTS------EEEEECHHHHTTBCEEEEESCSSSSSS--C
T ss_pred             CeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCC------eEEEEcccccccccccccCCeeeEEee--C
Confidence            36777777 66655544331111111223333356666776653      47788876400       223333332  1


Q ss_pred             CcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          169 HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       169 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      ..-.+++...+. +++|+.        -..+..||..+
T Consensus       151 ~~v~~~~~~~~~-l~~~~~--------d~~i~i~d~~~  179 (342)
T 1yfq_A          151 NKIFTMDTNSSR-LIVGMN--------NSQVQWFRLPL  179 (342)
T ss_dssp             CCEEEEEECSSE-EEEEES--------TTEEEEEESSC
T ss_pred             CceEEEEecCCc-EEEEeC--------CCeEEEEECCc
Confidence            223344555555 555542        34688899876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=93.71  E-value=3.1  Score=35.88  Aligned_cols=91  Identities=5%  Similarity=0.006  Sum_probs=49.5

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      ++.||+....+      ..+.+||+. .+...+. ++... ..-.+++. -++.||+...        ....+.+||+. 
T Consensus        30 ~g~l~v~~~~~------~~v~~~~~~-~~~~~~~-~~~~~-~~~~~i~~~~~g~l~v~~~--------~~~~v~~~d~~-   91 (300)
T 2qc5_A           30 DGKVWFTQHKA------NKISSLDQS-GRIKEFE-VPTPD-AKVMCLIVSSLGDIWFTEN--------GANKIGKLSKK-   91 (300)
T ss_dssp             TSCEEEEETTT------TEEEEECTT-SCEEEEE-CSSTT-CCEEEEEECTTSCEEEEET--------TTTEEEEECTT-
T ss_pred             CCCEEEEcCCC------CeEEEECCC-CceEEEE-CCCCC-CcceeEEECCCCCEEEEec--------CCCeEEEECCC-
Confidence            56888865322      358899988 6665532 22211 12233443 3578888742        13568899988 


Q ss_pred             CCeEeCCCCCCCCCCceEEEE-CCEEEEEcc
Q 016413          207 RKWDSIPPLPSPRYSPATQLW-RGRLHVMGG  236 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG  236 (390)
                      .+.+..........-+.++.. ++++|+...
T Consensus        92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~  122 (300)
T 2qc5_A           92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQL  122 (300)
T ss_dssp             SCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred             CCeEEecCCCCCCCCccceECCCCCEEEEcc
Confidence            666544211111222333333 578888753

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=93.70  E-value=0.34  Score=45.47  Aligned_cols=104  Identities=12%  Similarity=0.018  Sum_probs=56.4

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE--eCCEEEEEeceeCCCCCCCCceEEEEECC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  205 (390)
                      ++.+++.|+.++      .|.+||+.+..-..+-.+... ...-.+++.  .++.+++.|+.++        .+.+||.+
T Consensus       131 ~~~~lasGs~dg------~i~lWd~~~~~~~~~~~~~gH-~~~V~~l~f~p~~~~~l~s~s~D~--------~v~iwd~~  195 (435)
T 4e54_B          131 HPSTVAVGSKGG------DIMLWNFGIKDKPTFIKGIGA-GGSITGLKFNPLNTNQFYASSMEG--------TTRLQDFK  195 (435)
T ss_dssp             CTTCEEEEETTS------CEEEECSSCCSCCEEECCCSS-SCCCCEEEECSSCTTEEEEECSSS--------CEEEEETT
T ss_pred             CCCEEEEEeCCC------EEEEEECCCCCceeEEEccCC-CCCEEEEEEeCCCCCEEEEEeCCC--------EEEEeecc
Confidence            456888888775      388888877654333222111 111223343  3566777776543        36778888


Q ss_pred             CCCeEeCCCCCC-CCCCceEE-EECCEEEEEccCCCCCCCCCcceEEe
Q 016413          206 TRKWDSIPPLPS-PRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       206 ~~~W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      ++.-..+..... .....++. .-++.+++.|+.+     ..+..|++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-----g~i~~wd~  238 (435)
T 4e54_B          196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNV-----GNVILLNM  238 (435)
T ss_dssp             SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSS-----SBEEEEES
T ss_pred             CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCC-----CcEeeecc
Confidence            766554432211 11122233 3356677777654     34667774

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=93.48  E-value=6.1  Score=38.59  Aligned_cols=100  Identities=14%  Similarity=0.213  Sum_probs=58.4

Q ss_pred             ceEEEECCEEEEEecCCCCCCCCCeEEEEeC-CCC--ceeecCCCCCCC---C---CcceEEEEeCCEEEEEeceeCCCC
Q 016413          122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNF-TDN--KWVDRFDMPKDM---A---HSHLGVVSDGRYIYIVSGQYGPQC  192 (390)
Q Consensus       122 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~-~~~--~W~~~~~l~~~~---~---r~~~~~~~~~~~iyv~GG~~~~~~  192 (390)
                      .+.++.++.||+....+      ..+..+|. .+.  .|+.-...+...   .   ....+.++.+++||+...      
T Consensus        56 ~~P~v~~g~vyv~~~~~------~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------  123 (571)
T 2ad6_A           56 GAPLVIGDMMYVHSAFP------NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------  123 (571)
T ss_dssp             SCCEEETTEEEEECSTT------TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------
T ss_pred             cccEEECCEEEEEeCCC------CEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC------
Confidence            44567799999986531      35899998 665  487643322100   0   012245668999988742      


Q ss_pred             CCCCceEEEEECCCC--CeEeCCCC-CCC-CCCceEEEECCEEEEEcc
Q 016413          193 RGPTSRTFVLDSETR--KWDSIPPL-PSP-RYSPATQLWRGRLHVMGG  236 (390)
Q Consensus       193 ~~~~~~v~~yd~~~~--~W~~~~~~-p~~-r~~~~~~~~~~~iyv~GG  236 (390)
                         ...+..+|.++.  .|+.-..- +.. ....+-++.++.+|+-.+
T Consensus       124 ---dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~  168 (571)
T 2ad6_A          124 ---NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCS  168 (571)
T ss_dssp             ---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECB
T ss_pred             ---CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEec
Confidence               356889998776  48753221 111 112233467888887653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=93.43  E-value=0.91  Score=41.17  Aligned_cols=106  Identities=8%  Similarity=0.003  Sum_probs=51.5

Q ss_pred             EEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCC-CCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEE
Q 016413          125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVL  202 (390)
Q Consensus       125 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~-~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~y  202 (390)
                      +...+..++.|+.++      .|.+||+.+++-........ .-...-.+++. -+++.++.|+.+        ..+.++
T Consensus        89 ~~s~d~~l~~~s~dg------~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d--------~~i~iw  154 (344)
T 4gqb_B           89 TWVGERGILVASDSG------AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD--------ICIKVW  154 (344)
T ss_dssp             EEETTTEEEEEETTS------EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT--------SCEEEE
T ss_pred             EEeCCCeEEEEECCC------EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC--------CeEEEE
Confidence            334444556676553      48888887765322111100 00011122333 366777777654        347788


Q ss_pred             ECCCCCeEeCCCCCCCCCCceEEEE---CCEEEEEccCCCCCCCCCcceEEe
Q 016413          203 DSETRKWDSIPPLPSPRYSPATQLW---RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       203 d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      |+.+.+-  +..+......-..+.+   +..+++.|+.+     ..+..||+
T Consensus       155 d~~~~~~--~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D-----~~v~iwd~  199 (344)
T 4gqb_B          155 DLAQQVV--LSSYRAHAAQVTCVAASPHKDSVFLSCSED-----NRILLWDT  199 (344)
T ss_dssp             ETTTTEE--EEEECCCSSCEEEEEECSSCTTEEEEEETT-----SCEEEEET
T ss_pred             ECCCCcE--EEEEcCcCCceEEEEecCCCCCceeeeccc-----cccccccc
Confidence            8877542  2222211111112222   33577777654     35777875

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=93.39  E-value=1.8  Score=38.21  Aligned_cols=63  Identities=16%  Similarity=0.176  Sum_probs=31.9

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCC-CceeecC--CCCCCCCCcceEEEE--eCCEEEEEeceeCCCCCCCCceEEEEE
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTD-NKWVDRF--DMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLD  203 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~-~~W~~~~--~l~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd  203 (390)
                      ..||+.+..+      ..+.+||+.+ .+...+.  ....+....-..++.  .+..+|+.+..        ...+.+||
T Consensus       141 ~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~--------~~~i~~~~  206 (343)
T 1ri6_A          141 RTLWVPALKQ------DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL--------NSSVDVWE  206 (343)
T ss_dssp             SEEEEEEGGG------TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT--------TTEEEEEE
T ss_pred             CEEEEecCCC------CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC--------CCEEEEEE
Confidence            3677765333      3588899887 6554332  111111111112333  23457777532        35678888


Q ss_pred             CC
Q 016413          204 SE  205 (390)
Q Consensus       204 ~~  205 (390)
                      ..
T Consensus       207 ~~  208 (343)
T 1ri6_A          207 LK  208 (343)
T ss_dssp             SS
T ss_pred             ec
Confidence            74

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=93.37  E-value=1.9  Score=39.55  Aligned_cols=100  Identities=11%  Similarity=0.022  Sum_probs=51.4

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-CCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      ++++++.|+.++      .+.+||+.+.+-...  +... ...-.+++.. ++.+++.|+.+        ..+.+||..+
T Consensus       108 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~--~~~h-~~~v~~~~~~~~~~~l~s~s~d--------~~i~iwd~~~  170 (420)
T 3vl1_A          108 QMRRFILGTTEG------DIKVLDSNFNLQREI--DQAH-VSEITKLKFFPSGEALISSSQD--------MQLKIWSVKD  170 (420)
T ss_dssp             SSCEEEEEETTS------CEEEECTTSCEEEEE--TTSS-SSCEEEEEECTTSSEEEEEETT--------SEEEEEETTT
T ss_pred             CCCEEEEEECCC------CEEEEeCCCcceeee--cccc-cCccEEEEECCCCCEEEEEeCC--------CeEEEEeCCC
Confidence            667888887663      488899887654332  2111 1122233332 56666676642        4588888876


Q ss_pred             CCeEeCCCCCCCCCC-ceEEEE-CCEEEEEccCCCCCCCCCcceEEe
Q 016413          207 RKWDSIPPLPSPRYS-PATQLW-RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      .+-  +..+...... .+++.. ++.+++.|+.+     ..+..|++
T Consensus       171 ~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~  210 (420)
T 3vl1_A          171 GSN--PRTLIGHRATVTDIAIIDRGRNVLSASLD-----GTIRLWEC  210 (420)
T ss_dssp             CCC--CEEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEET
T ss_pred             CcC--ceEEcCCCCcEEEEEEcCCCCEEEEEcCC-----CcEEEeEC
Confidence            431  1111111111 122222 45566666654     34667764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=93.37  E-value=2.1  Score=42.34  Aligned_cols=243  Identities=9%  Similarity=-0.082  Sum_probs=114.4

Q ss_pred             hcccccccC--C-CCeEECCCCCC----cCCCceEEEECCEEEEEecCCCC----CCCCCeEEEEeCCC------Cceee
Q 016413           97 ATFADLPAP--D-LEWEQMPSAPV----PRLDGAAIQIKNLFYVFAGYGSL----DYVHSHVDVYNFTD------NKWVD  159 (390)
Q Consensus        97 ~~~~~~~~~--~-~~W~~~~~~~~----~R~~~~~~~~~~~lyv~GG~~~~----~~~~~~v~~yd~~~------~~W~~  159 (390)
                      ..++.++..  . ..-..+...+.    .+....+..-+++.+++...+..    .....+++++|+.+      .+-+.
T Consensus       102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  181 (662)
T 3azo_A          102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE  181 (662)
T ss_dssp             CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE
T ss_pred             CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE
Confidence            357777765  3 45555555431    11111122225555555443311    11235799999988      66665


Q ss_pred             cC-CCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECC-CCCeEeCCCCCCC--CCCceEEE-ECCEEEEE
Q 016413          160 RF-DMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSE-TRKWDSIPPLPSP--RYSPATQL-WRGRLHVM  234 (390)
Q Consensus       160 ~~-~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~-~~~W~~~~~~p~~--r~~~~~~~-~~~~iyv~  234 (390)
                      +. .-..   ........-+++..++...+.....-...+++++|.. +..+.....+...  ......+. -+++||+.
T Consensus       182 l~~~~~~---~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~  258 (662)
T 3azo_A          182 LSDDAHR---FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVA  258 (662)
T ss_dssp             SSCSCSS---EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEE
T ss_pred             EEecCCC---cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEE
Confidence            54 2211   1111122235554444443332110124689999998 4633222222111  11112222 26677766


Q ss_pred             ccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCC----C---ceeEEEE-CCEEEEEcCCCCCCCCCCCCCcccc
Q 016413          235 GGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG----P---HRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKC  306 (390)
Q Consensus       235 GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~----~---~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~  306 (390)
                      +..++     ....|.+     +..+.+++.+.+.....    .   ....+.. ++++++.+.. +.            
T Consensus       259 ~~~~~-----~~~l~~~-----~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~------------  315 (662)
T 3azo_A          259 TDRTG-----WWNLHRV-----DPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA------------  315 (662)
T ss_dssp             ECTTS-----SCEEEEE-----CTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS------------
T ss_pred             ECCCC-----CeEEEEE-----ECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc------------
Confidence            54432     1122222     24567777664322111    0   1123333 6777777655 32            


Q ss_pred             ccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEE-EEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceee
Q 016413          307 SRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAW-VIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIY  384 (390)
Q Consensus       307 ~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~-~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  384 (390)
                              ..+|.+| .+.+.+.+..-   .... ..+ ..-++.+++..+...         ...++|.+|+++.+...
T Consensus       316 --------~~l~~~d~~~~~~~~l~~~---~~~~-~~~~s~~~~~~~~~~~~~~---------~~~~i~~~d~~~g~~~~  374 (662)
T 3azo_A          316 --------AVLGILDPESGELVDAAGP---WTEW-AATLTVSGTRAVGVAASPR---------TAYEVVELDTVTGRART  374 (662)
T ss_dssp             --------CEEEEEETTTTEEEECCSS---CCEE-EEEEEEETTEEEEEEEETT---------EEEEEEEEETTTCCEEE
T ss_pred             --------cEEEEEECCCCcEEEecCC---CCeE-EEEEecCCCEEEEEEcCCC---------CCCEEEEEECCCCceEE
Confidence                    2488888 55666665422   1111 122 334566666544322         22368889988877766


Q ss_pred             cc
Q 016413          385 HY  386 (390)
Q Consensus       385 v~  386 (390)
                      +.
T Consensus       375 l~  376 (662)
T 3azo_A          375 IG  376 (662)
T ss_dssp             EE
T ss_pred             ee
Confidence            53

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=93.35  E-value=5.8  Score=39.41  Aligned_cols=65  Identities=15%  Similarity=0.052  Sum_probs=36.0

Q ss_pred             CeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCCC-CeEeCC
Q 016413          145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETR-KWDSIP  213 (390)
Q Consensus       145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~-~W~~~~  213 (390)
                      ..++++|+.+.+-..+...... ...-..++. -+++..+++..+...   ....++.+|+.+. ..+.+.
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~---~~~~v~~~d~~~g~~~~~~~  301 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPK-EKFLTNLSWSPDENILYVAEVNRAQ---NECKVNAYDAETGRFVRTLF  301 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCT-TCEEEEEEECTTSSEEEEEEECTTS---CEEEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEECCCCceEeeccCCCC-ceeEeeEEEECCCCEEEEEEeCCCC---CeeEEEEEECCCCceeeEEE
Confidence            5699999998876555432111 112122232 255544444443322   2568999999887 665553

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=93.34  E-value=1.7  Score=38.04  Aligned_cols=88  Identities=11%  Similarity=0.098  Sum_probs=47.3

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCc--eeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  205 (390)
                      .+++++.|..+      ..+..+|+++.+  |+.-..-.   ...+...+.-+++|++.+          ...+..||+.
T Consensus         4 ~~~~lv~~~~~------~~v~~~d~~tG~~~w~~~~~~~---~~~~~~~~~pdG~ilvs~----------~~~V~~~d~~   64 (276)
T 3no2_A            4 PQHLLVGGSGW------NKIAIINKDTKEIVWEYPLEKG---WECNSVAATKAGEILFSY----------SKGAKMITRD   64 (276)
T ss_dssp             CCEEEEECTTC------SEEEEEETTTTEEEEEEECCTT---CCCCEEEECTTSCEEEEC----------BSEEEEECTT
T ss_pred             CCcEEEeeCCC------CEEEEEECCCCeEEEEeCCCcc---CCCcCeEECCCCCEEEeC----------CCCEEEECCC
Confidence            45777776544      458889987765  76532211   123334444578888832          2458889983


Q ss_pred             CC-CeEeCCCCCCCCCCceEE-EECCEEEEEcc
Q 016413          206 TR-KWDSIPPLPSPRYSPATQ-LWRGRLHVMGG  236 (390)
Q Consensus       206 ~~-~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG  236 (390)
                      .+ .|+.-.+.  ....+++. ..++++++...
T Consensus        65 G~~~W~~~~~~--~~~~~~~~~~~dG~~lv~~~   95 (276)
T 3no2_A           65 GRELWNIAAPA--GCEMQTARILPDGNALVAWC   95 (276)
T ss_dssp             SCEEEEEECCT--TCEEEEEEECTTSCEEEEEE
T ss_pred             CCEEEEEcCCC--CccccccEECCCCCEEEEec
Confidence            22 37654421  11122333 33566666543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=93.33  E-value=2.1  Score=39.26  Aligned_cols=131  Identities=13%  Similarity=0.142  Sum_probs=64.1

Q ss_pred             hcccccccCCCCeEECCCCCCcCCCceEEEE-CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEE
Q 016413           97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV  175 (390)
Q Consensus        97 ~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~  175 (390)
                      ..+..++..+.+............-.+++.. ++.++++|+.++      .+.+||+.+.+-...  +..  .......+
T Consensus       113 ~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg------~i~iwd~~~~~~~~~--~~~--~~~~v~~~  182 (401)
T 4aez_A          113 RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG------LVDIYDVESQTKLRT--MAG--HQARVGCL  182 (401)
T ss_dssp             TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEE--ECC--CSSCEEEE
T ss_pred             CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCC------eEEEEECcCCeEEEE--ecC--CCCceEEE
Confidence            3577777766665443322211111222222 566777777653      488899887764332  111  11122223


Q ss_pred             EeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       176 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      ..++.+++.|+.        -..+..||.....-. +..+.........+.+  ++.+++.|+.+     ..+..|++
T Consensus       183 ~~~~~~l~~~~~--------dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~  246 (401)
T 4aez_A          183 SWNRHVLSSGSR--------SGAIHHHDVRIANHQ-IGTLQGHSSEVCGLAWRSDGLQLASGGND-----NVVQIWDA  246 (401)
T ss_dssp             EEETTEEEEEET--------TSEEEEEETTSSSCE-EEEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEET
T ss_pred             EECCCEEEEEcC--------CCCEEEEecccCcce-eeEEcCCCCCeeEEEEcCCCCEEEEEeCC-----CeEEEccC
Confidence            335567777764        345788888743211 1111111111122222  56677777654     35677775

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=93.02  E-value=0.51  Score=42.72  Aligned_cols=111  Identities=14%  Similarity=0.062  Sum_probs=51.4

Q ss_pred             EEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-CCEEEEEeceeCCCCCCCCceEEEEECCCCCe
Q 016413          131 FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKW  209 (390)
Q Consensus       131 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W  209 (390)
                      .+.+|.+.......-.++.+|+.+.+.+.+.....  ....+.+..- +..||+.+......   ..-.++.+|..+.+.
T Consensus        15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~--~~p~~l~~spdg~~l~~~~~~~~~~---~~v~~~~~~~~~g~~   89 (361)
T 3scy_A           15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEV--ANPSYLIPSADGKFVYSVNEFSKDQ---AAVSAFAFDKEKGTL   89 (361)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEEC--SCCCSEEECTTSSEEEEEECCSSTT---CEEEEEEEETTTTEE
T ss_pred             EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccC--CCCceEEECCCCCEEEEEEccCCCC---CcEEEEEEeCCCCcE
Confidence            44556665433212246667888888877654411  1212222222 44577765421110   122345556655667


Q ss_pred             EeCCCCCCCCCC-ceEEEECCEEEEEccCCCCCCCCCcceEEe
Q 016413          210 DSIPPLPSPRYS-PATQLWRGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       210 ~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      +.+...+..... ..++.-++.||+....     ...+..|++
T Consensus        90 ~~~~~~~~~~~~p~~~~~dg~~l~~~~~~-----~~~v~~~~~  127 (361)
T 3scy_A           90 HLLNTQKTMGADPCYLTTNGKNIVTANYS-----GGSITVFPI  127 (361)
T ss_dssp             EEEEEEECSSSCEEEEEECSSEEEEEETT-----TTEEEEEEB
T ss_pred             EEeeEeccCCCCcEEEEECCCEEEEEECC-----CCEEEEEEe
Confidence            666544322222 2233333446665432     234556664

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=93.00  E-value=0.45  Score=43.04  Aligned_cols=97  Identities=9%  Similarity=0.145  Sum_probs=48.2

Q ss_pred             CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCC-CCceEEEE--CCEEEEEccCCCCCCCCCcceEEeeee
Q 016413          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPR-YSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVK  254 (390)
Q Consensus       178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~  254 (390)
                      ++++++.||.++        .+.+||..+..|.....+..+. .....+..  ++++++.|+.+     ..+..|++   
T Consensus        27 ~g~~las~~~D~--------~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D-----~~v~iw~~---   90 (345)
T 3fm0_A           27 AGTLLASCGGDR--------RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD-----ATTCIWKK---   90 (345)
T ss_dssp             TSSCEEEEETTS--------CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEEE---
T ss_pred             CCCEEEEEcCCC--------eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC-----CcEEEEEc---
Confidence            667777777543        3667777777765332221111 11112222  56677777654     35677774   


Q ss_pred             ccccccCCeEEccCCCCCCCceeEEEE--CCEEEEEcCCCCC
Q 016413          255 DGKALEKAWRTEIPIPRGGPHRACFVF--NDRLFVVGGQEGD  294 (390)
Q Consensus       255 ~~~~~~~~W~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~  294 (390)
                          .+..+..+..+......-.++..  ++++++.|+.++.
T Consensus        91 ----~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~  128 (345)
T 3fm0_A           91 ----NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS  128 (345)
T ss_dssp             ----CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ----cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCe
Confidence                34444433332211111122222  5677888887653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=92.96  E-value=1.5  Score=39.80  Aligned_cols=106  Identities=10%  Similarity=-0.043  Sum_probs=54.3

Q ss_pred             ECCEEEEEecCCCCCCCCCeEEEEeCCCCc----eeecCCCCCCCCCcceEEEE-eC----C---EEEEEeceeCCCCCC
Q 016413          127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNK----WVDRFDMPKDMAHSHLGVVS-DG----R---YIYIVSGQYGPQCRG  194 (390)
Q Consensus       127 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~----W~~~~~l~~~~~r~~~~~~~-~~----~---~iyv~GG~~~~~~~~  194 (390)
                      +...+++.|+.++      .+.+||..+.+    +..+..+... ...-.+++. -+    +   .+++.|+.+      
T Consensus        24 ~~~~~l~s~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~g~~~~~l~s~~~d------   90 (397)
T 1sq9_A           24 ACNSFTVSCSGDG------YLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIERDAFELCLVATTSFS------   90 (397)
T ss_dssp             ECSSEEEEEETTS------EEEEEESBCCTTCCGGGGEEEEECC-TTCEEEEEEEEEEETTTEEEEEEEEEETT------
T ss_pred             ecCCeEEEEcCCC------EEEEEECCCcccccCCCcceEEecC-CCcEEEEEEecccccCCccccEEEEEcCC------
Confidence            3446777777663      58888887765    2222211111 111222232 33    6   777777643      


Q ss_pred             CCceEEEEECCCCC------eEeCCCCCCC---CCCceEEEE-----CCEE-EEEccCCCCCCCCCcceEEee
Q 016413          195 PTSRTFVLDSETRK------WDSIPPLPSP---RYSPATQLW-----RGRL-HVMGGSKENRHTPGLEHWSIA  252 (390)
Q Consensus       195 ~~~~v~~yd~~~~~------W~~~~~~p~~---r~~~~~~~~-----~~~i-yv~GG~~~~~~~~~~~~~~~~  252 (390)
                        ..+.+||..+..      +..+...+..   ..-.++...     ++.. ++.|+.+     ..+..|++.
T Consensus        91 --g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~  156 (397)
T 1sq9_A           91 --GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-----GTTYIWKFH  156 (397)
T ss_dssp             --SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-----SCEEEEEEE
T ss_pred             --CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-----CcEEEEeCC
Confidence              346777776665      6665543211   112223333     4555 7777654     357778763

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=92.86  E-value=5  Score=35.79  Aligned_cols=65  Identities=8%  Similarity=0.071  Sum_probs=38.7

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      ++.+++.|+.++      .+..||+.+.+-..+......  ..-.+++. -++.+++.|+.+        ..+..||..+
T Consensus       138 ~~~~l~s~s~dg------~i~~wd~~~~~~~~~~~~~~~--~~i~~~~~~pdg~~lasg~~d--------g~i~iwd~~~  201 (343)
T 3lrv_A          138 NTEYFIWADNRG------TIGFQSYEDDSQYIVHSAKSD--VEYSSGVLHKDSLLLALYSPD--------GILDVYNLSS  201 (343)
T ss_dssp             -CCEEEEEETTC------CEEEEESSSSCEEEEECCCSS--CCCCEEEECTTSCEEEEECTT--------SCEEEEESSC
T ss_pred             CCCEEEEEeCCC------cEEEEECCCCcEEEEEecCCC--CceEEEEECCCCCEEEEEcCC--------CEEEEEECCC
Confidence            456777788664      488899887765433222221  11223333 367788888643        4578899887


Q ss_pred             CC
Q 016413          207 RK  208 (390)
Q Consensus       207 ~~  208 (390)
                      .+
T Consensus       202 ~~  203 (343)
T 3lrv_A          202 PD  203 (343)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=92.83  E-value=7.5  Score=38.25  Aligned_cols=99  Identities=13%  Similarity=0.201  Sum_probs=55.7

Q ss_pred             ceEEEECCEEEEEecCCCCCCCCCeEEEEeC-CCC--ceeecCCCCCCC---CC---cceEEEE--eCCE----EEEEec
Q 016413          122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNF-TDN--KWVDRFDMPKDM---AH---SHLGVVS--DGRY----IYIVSG  186 (390)
Q Consensus       122 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~-~~~--~W~~~~~l~~~~---~r---~~~~~~~--~~~~----iyv~GG  186 (390)
                      .+.++.++.||+....+      ..+..+|. .+.  .|+.-...+...   .+   ...+.++  .+++    ||+...
T Consensus        56 ~tP~v~~g~vyv~~~~~------~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~  129 (599)
T 1w6s_A           56 GAPLVVDGKMYIHTSFP------NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL  129 (599)
T ss_dssp             SCCEEETTEEEEECSTT------TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT
T ss_pred             eccEEECCEEEEEeCCC------CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC
Confidence            44567799999986531      34889998 665  487644332100   01   1123455  5776    877532


Q ss_pred             eeCCCCCCCCceEEEEECCCCC--eEeCCCCCC-C-CCCceEEEECCEEEEEc
Q 016413          187 QYGPQCRGPTSRTFVLDSETRK--WDSIPPLPS-P-RYSPATQLWRGRLHVMG  235 (390)
Q Consensus       187 ~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~p~-~-r~~~~~~~~~~~iyv~G  235 (390)
                               ...+..+|.++.+  |+.-..-+. . ....+-++.++.||+-.
T Consensus       130 ---------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~  173 (599)
T 1w6s_A          130 ---------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGS  173 (599)
T ss_dssp             ---------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECC
T ss_pred             ---------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEe
Confidence                     3568889987654  875322111 1 11223356788887654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=92.68  E-value=2.3  Score=38.39  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=14.3

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTD  154 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~  154 (390)
                      ++..++.||.++      .+.+|+...
T Consensus       117 ~g~~lasg~~d~------~i~v~~~~~  137 (354)
T 2pbi_B          117 SGCAIACGGLDN------KCSVYPLTF  137 (354)
T ss_dssp             TSSEEEEESTTS------EEEEEECCC
T ss_pred             CCCEEEEeeCCC------CEEEEEEec
Confidence            567888888764      466776654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=92.64  E-value=4.5  Score=36.54  Aligned_cols=28  Identities=11%  Similarity=-0.025  Sum_probs=17.1

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDN  155 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~  155 (390)
                      ++++++.|+.+.....-..++.|+..+.
T Consensus        53 DG~~las~s~d~~~~wd~~v~~~~~~~~   80 (357)
T 4g56_B           53 DGALLLAASSLSSRTWGGSIWVFKDPEG   80 (357)
T ss_dssp             SSCEEEEEECSSSSSCCEEEEEESSCC-
T ss_pred             CCCEEEEEcCCCCccccCeEEEEECCCC
Confidence            7788888886643222235777776554

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=92.58  E-value=2.8  Score=36.36  Aligned_cols=102  Identities=8%  Similarity=0.014  Sum_probs=48.7

Q ss_pred             ECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEE-EeCCEEEEEeceeCCCCCCCCceEEEEECC
Q 016413          127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV-SDGRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (390)
Q Consensus       127 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  205 (390)
                      .++..++.|+.++      .+.+||+.+..-...-....   ..-.+++ .-++.+++.|+.++        .+..|+..
T Consensus        27 ~~~~~l~s~~~dg------~v~vw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg--------~i~~~~~~   89 (313)
T 3odt_A           27 VDDSKVASVSRDG------TVRLWSKDDQWLGTVVYTGQ---GFLNSVCYDSEKELLLFGGKDT--------MINGVPLF   89 (313)
T ss_dssp             EETTEEEEEETTS------EEEEEEESSSEEEEEEEECS---SCEEEEEEETTTTEEEEEETTS--------CEEEEETT
T ss_pred             cCCCEEEEEEcCC------cEEEEECCCCEEEEEeecCC---ccEEEEEECCCCCEEEEecCCC--------eEEEEEee
Confidence            4566677777653      48888887665433211111   1122223 23566777776433        35566654


Q ss_pred             CCC-eEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEE
Q 016413          206 TRK-WDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWS  250 (390)
Q Consensus       206 ~~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  250 (390)
                      ... .+.+..+.........+..++.+++.|+.+     ..+..|+
T Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-----~~i~~~d  130 (313)
T 3odt_A           90 ATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWD-----KTAKVWK  130 (313)
T ss_dssp             CCTTSCC-CEECCCSSCEEEEEEETTEEEEEETT-----SEEEEEE
T ss_pred             ecCCCCcccchhhcccCEEEEEecCCEEEEEeCC-----CCEEEEc
Confidence            421 122222222222223334456666666653     2355554

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=92.55  E-value=2.1  Score=39.64  Aligned_cols=95  Identities=9%  Similarity=0.037  Sum_probs=42.8

Q ss_pred             eeeeeccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccCCCCeEECCCCCCcCCCceEEEECCEE
Q 016413           52 VASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLF  131 (390)
Q Consensus        52 ~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~l  131 (390)
                      ++..||..+.+-..+-.+...  ...-.+++...+.....-...+..+..+|..+.+-..  .+........+...++.+
T Consensus       126 tV~lWd~~tg~~~~~~~~~~~--~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~--~~~~h~~~v~~~s~~~~~  201 (420)
T 4gga_A          126 SVYLWSASSGDILQLLQMEQP--GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR--NMTSHSARVGSLSWNSYI  201 (420)
T ss_dssp             EEEEEETTTCCEEEEEECCST--TCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEEETTE
T ss_pred             EEEEEECCCCCEEEEEEecCC--CCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE--EEeCCCCceEEEeeCCCE
Confidence            567777777665554333221  0111222222222111111122356666665543221  111111223344557778


Q ss_pred             EEEecCCCCCCCCCeEEEEeCCCCc
Q 016413          132 YVFAGYGSLDYVHSHVDVYNFTDNK  156 (390)
Q Consensus       132 yv~GG~~~~~~~~~~v~~yd~~~~~  156 (390)
                      ++.|+.+.      .+..+|..+..
T Consensus       202 l~sgs~d~------~i~~~d~~~~~  220 (420)
T 4gga_A          202 LSSGSRSG------HIHHHDVRVAE  220 (420)
T ss_dssp             EEEEETTS------EEEEEETTSSS
T ss_pred             EEEEeCCC------ceeEeeecccc
Confidence            88887663      46777766544

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=92.52  E-value=1.6  Score=38.61  Aligned_cols=101  Identities=9%  Similarity=0.052  Sum_probs=52.2

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCc----eeecCCCCCCCCCcceEEEE-eCCE-EEEEeceeCCCCCCCCceEEE
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNK----WVDRFDMPKDMAHSHLGVVS-DGRY-IYIVSGQYGPQCRGPTSRTFV  201 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~----W~~~~~l~~~~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~v~~  201 (390)
                      ++.+++.|+.++      .+.+||..+..    -..+....    ..-.+++. -++. +++.|+.+        ..+.+
T Consensus        22 ~~~~l~~~~~d~------~v~iw~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~d--------g~i~~   83 (342)
T 1yfq_A           22 SKSLLLITSWDG------SLTVYKFDIQAKNVDLLQSLRYK----HPLLCCNFIDNTDLQIYVGTVQ--------GEILK   83 (342)
T ss_dssp             GGTEEEEEETTS------EEEEEEEETTTTEEEEEEEEECS----SCEEEEEEEESSSEEEEEEETT--------SCEEE
T ss_pred             CCCEEEEEcCCC------eEEEEEeCCCCccccceeeeecC----CceEEEEECCCCCcEEEEEcCC--------CeEEE
Confidence            456667776553      47777776655    32222111    11222332 3566 66777643        45888


Q ss_pred             EEC-CCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEe
Q 016413          202 LDS-ETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       202 yd~-~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      ||. .+..-..+...+....-.++....+.+++.|+.+     ..+..|++
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d-----~~i~iwd~  129 (342)
T 1yfq_A           84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD-----GLIEVIDP  129 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETT-----SEEEEECH
T ss_pred             EEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCC-----CeEEEEcc
Confidence            998 8777655543111122223333335556666543     34666764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=92.43  E-value=1.5  Score=39.77  Aligned_cols=102  Identities=13%  Similarity=0.162  Sum_probs=52.3

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-e-CCEEEEEeceeCCCCCCCCceEEEEECC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-D-GRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~  205 (390)
                      +++.++.|+.++      .+.++|+.+++-..  .+... ...-.+++. . +..+++.|+.+        ..+.+||..
T Consensus       138 dg~~l~sgs~d~------~i~iwd~~~~~~~~--~~~~h-~~~V~~~~~~~~~~~~l~s~s~D--------~~v~iwd~~  200 (344)
T 4gqb_B          138 SGTQAVSGSKDI------CIKVWDLAQQVVLS--SYRAH-AAQVTCVAASPHKDSVFLSCSED--------NRILLWDTR  200 (344)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEE--EECCC-SSCEEEEEECSSCTTEEEEEETT--------SCEEEEETT
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEE--EEcCc-CCceEEEEecCCCCCceeeeccc--------ccccccccc
Confidence            567788888764      48889988765322  22211 011122232 2 33577777654        347788988


Q ss_pred             CCCeEeCCCCCCCCCCc-eEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          206 TRKWDSIPPLPSPRYSP-ATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       206 ~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      +.+-...-......... +++..  ++++++.|+.+     ..+..||+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d-----g~v~~wd~  244 (344)
T 4gqb_B          201 CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN-----GTVSLVDT  244 (344)
T ss_dssp             SSSCEEECC----CCCEEEEEECSSCTTEEEEEETT-----SEEEEEES
T ss_pred             ccceeeeeecceeeccceeeeecCCCCcceEEeccC-----CcEEEEEC
Confidence            76533221111111111 22222  45677777654     34677774

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=92.42  E-value=0.52  Score=42.25  Aligned_cols=101  Identities=11%  Similarity=0.099  Sum_probs=52.3

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe--CCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +.+++.|+.++      .+.+||+.+.+-...  +... ...-.++...  ++.+++.|+.+        ..+..||..+
T Consensus        85 ~~~l~~~~~dg------~i~v~d~~~~~~~~~--~~~~-~~~i~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~  147 (366)
T 3k26_A           85 HPLLAVAGSRG------IIRIINPITMQCIKH--YVGH-GNAINELKFHPRDPNLLLSVSKD--------HALRLWNIQT  147 (366)
T ss_dssp             CEEEEEEETTC------EEEEECTTTCCEEEE--EESC-CSCEEEEEECSSCTTEEEEEETT--------SCEEEEETTT
T ss_pred             CCEEEEecCCC------EEEEEEchhceEeee--ecCC-CCcEEEEEECCCCCCEEEEEeCC--------CeEEEEEeec
Confidence            57888888763      588899876653221  1110 1112233332  56777777643        3478899887


Q ss_pred             CCeEeC-CCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          207 RKWDSI-PPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       207 ~~W~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      .+-... ..+.........+.+  ++..++.|+.+     ..+..|++
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~  190 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD-----HSLKLWRI  190 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEES
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEEEEecCC-----CCEEEEEC
Confidence            653322 111212222222222  45566666653     35666765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=92.41  E-value=2.5  Score=39.26  Aligned_cols=187  Identities=8%  Similarity=-0.016  Sum_probs=89.7

Q ss_pred             CeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCce
Q 016413          145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPA  223 (390)
Q Consensus       145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~  223 (390)
                      ..++++|..+..-..+..-..   . -.+.+. -+++.+++++.+..     ...++++|+.+.+...+...+.  ...+
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~---~-v~~~~~Spdg~~la~~s~~~~-----~~~i~~~d~~tg~~~~l~~~~~--~~~~  227 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQ---P-LMSPAWSPDGSKLAYVTFESG-----RSALVIQTLANGAVRQVASFPR--HNGA  227 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESS---C-EEEEEECTTSSEEEEEECTTS-----SCEEEEEETTTCCEEEEECCSS--CEEE
T ss_pred             ceEEEEcCCCCCCEEEeCCCC---c-ceeeEEcCCCCEEEEEEecCC-----CcEEEEEECCCCcEEEeecCCC--cccC
Confidence            568999987655444322111   1 222222 25555566554321     3679999999888766544322  1112


Q ss_pred             EEEE-CC-EEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEE--CCEEEEEcCCCCCCCCCC
Q 016413          224 TQLW-RG-RLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF--NDRLFVVGGQEGDFMAKP  299 (390)
Q Consensus       224 ~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~  299 (390)
                      .+.. ++ .|++.+..++   ...+..|+       ..+.+...+...+..   ......  +++.+++++....     
T Consensus       228 ~~~spdg~~la~~~~~~g---~~~i~~~d-------~~~~~~~~l~~~~~~---~~~~~~spdg~~l~~~s~~~g-----  289 (415)
T 2hqs_A          228 PAFSPDGSKLAFALSKTG---SLNLYVMD-------LASGQIRQVTDGRSN---NTEPTWFPDSQNLAFTSDQAG-----  289 (415)
T ss_dssp             EEECTTSSEEEEEECTTS---SCEEEEEE-------TTTCCEEECCCCSSC---EEEEEECTTSSEEEEEECTTS-----
T ss_pred             EEEcCCCCEEEEEEecCC---CceEEEEE-------CCCCCEEeCcCCCCc---ccceEECCCCCEEEEEECCCC-----
Confidence            2222 34 4554543322   12345555       345555444332211   122222  5554455443211     


Q ss_pred             CCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecC
Q 016413          300 GSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLD  378 (390)
Q Consensus       300 ~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~  378 (390)
                                    ...++.+| .+.+-..+....   ..........+++.+++++.+...         ..++++|++
T Consensus       290 --------------~~~i~~~d~~~~~~~~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~---------~~i~~~d~~  343 (415)
T 2hqs_A          290 --------------RPQVYKVNINGGAPQRITWEG---SQNQDADVSSDGKFMVMVSSNGGQ---------QHIAKQDLA  343 (415)
T ss_dssp             --------------SCEEEEEETTSSCCEECCCSS---SEEEEEEECTTSSEEEEEEECSSC---------EEEEEEETT
T ss_pred             --------------CcEEEEEECCCCCEEEEecCC---CcccCeEECCCCCEEEEEECcCCc---------eEEEEEECC
Confidence                          12488888 555544443211   111111122366666665543221         258899988


Q ss_pred             ccceeecc
Q 016413          379 SLVIIYHY  386 (390)
Q Consensus       379 ~~~W~~v~  386 (390)
                      +.+...+.
T Consensus       344 ~~~~~~l~  351 (415)
T 2hqs_A          344 TGGVQVLS  351 (415)
T ss_dssp             TCCEEECC
T ss_pred             CCCEEEec
Confidence            87765543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.38  E-value=1.5  Score=44.52  Aligned_cols=101  Identities=9%  Similarity=0.146  Sum_probs=50.5

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +++.+++|+.+      ..+.+||..+.+....-....   ..-.+++. -++..++.|+.        -..+.+||..+
T Consensus        66 ~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~--------dg~i~vw~~~~  128 (814)
T 3mkq_A           66 RKNWIIVGSDD------FRIRVFNYNTGEKVVDFEAHP---DYIRSIAVHPTKPYVLSGSD--------DLTVKLWNWEN  128 (814)
T ss_dssp             GGTEEEEEETT------SEEEEEETTTCCEEEEEECCS---SCEEEEEECSSSSEEEEEET--------TSEEEEEEGGG
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCcEEEEEecCC---CCEEEEEEeCCCCEEEEEcC--------CCEEEEEECCC
Confidence            55677777764      358899988776543211111   11222232 24555556653        24577888876


Q ss_pred             CCeEeCCCCCCCCC-CceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          207 RKWDSIPPLPSPRY-SPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       207 ~~W~~~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      . |.....+..... -.+++..  ++.+++.|+.+     ..+..|++
T Consensus       129 ~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~v~vwd~  170 (814)
T 3mkq_A          129 N-WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD-----RTVKVWSL  170 (814)
T ss_dssp             T-SEEEEEEECCSSCEEEEEEETTEEEEEEEEETT-----SEEEEEET
T ss_pred             C-ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC-----CeEEEEEC
Confidence            5 222221111111 1222333  45677777654     34666764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=92.30  E-value=2.6  Score=39.40  Aligned_cols=65  Identities=15%  Similarity=0.286  Sum_probs=36.6

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK  208 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  208 (390)
                      +++++.|+.++      .+.+||+.+.+-...-..... .. -.+++..++.+++.|+.+        ..+.+||..+.+
T Consensus       210 ~~~l~s~~~d~------~i~vwd~~~~~~~~~~~~~h~-~~-v~~~~~sd~~~l~s~~~d--------~~v~vwd~~~~~  273 (450)
T 2vdu_B          210 HQFIITSDRDE------HIKISHYPQCFIVDKWLFGHK-HF-VSSICCGKDYLLLSAGGD--------DKIFAWDWKTGK  273 (450)
T ss_dssp             CEEEEEEETTS------CEEEEEESCTTCEEEECCCCS-SC-EEEEEECSTTEEEEEESS--------SEEEEEETTTCC
T ss_pred             CcEEEEEcCCC------cEEEEECCCCceeeeeecCCC-Cc-eEEEEECCCCEEEEEeCC--------CeEEEEECCCCc
Confidence            77888888763      488888876653321010110 11 112222267777777632        468888888765


Q ss_pred             e
Q 016413          209 W  209 (390)
Q Consensus       209 W  209 (390)
                      -
T Consensus       274 ~  274 (450)
T 2vdu_B          274 N  274 (450)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.07  E-value=7.1  Score=39.38  Aligned_cols=103  Identities=9%  Similarity=0.092  Sum_probs=49.3

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe--CCEEEEEeceeCCCCCCCCceEEEEECC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~  205 (390)
                      ++..++.|+.++      .+.+||..++ |.....+... ...-.+++..  ++.+++.|+.+        ..+.+||..
T Consensus       108 ~~~~l~~~~~dg------~i~vw~~~~~-~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~d--------g~v~vwd~~  171 (814)
T 3mkq_A          108 TKPYVLSGSDDL------TVKLWNWENN-WALEQTFEGH-EHFVMCVAFNPKDPSTFASGCLD--------RTVKVWSLG  171 (814)
T ss_dssp             SSSEEEEEETTS------EEEEEEGGGT-SEEEEEEECC-SSCEEEEEEETTEEEEEEEEETT--------SEEEEEETT
T ss_pred             CCCEEEEEcCCC------EEEEEECCCC-ceEEEEEcCC-CCcEEEEEEEcCCCCEEEEEeCC--------CeEEEEECC
Confidence            455666776553      4888888765 2222111110 1112233333  46677777643        457888876


Q ss_pred             CCCeEeCCCCCCCCCCceEEEE---CCEEEEEccCCCCCCCCCcceEEe
Q 016413          206 TRKWDSIPPLPSPRYSPATQLW---RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       206 ~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      +..-...........-..++..   ++.+++.|+.+     ..+..|++
T Consensus       172 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~~~d~  215 (814)
T 3mkq_A          172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD-----LTIKIWDY  215 (814)
T ss_dssp             CSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT-----SEEEEEET
T ss_pred             CCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC-----CEEEEEEC
Confidence            5432111111111112222222   56677777653     24666663

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=91.93  E-value=2.4  Score=37.27  Aligned_cols=101  Identities=12%  Similarity=0.151  Sum_probs=51.2

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  207 (390)
                      ++.+++.|+.++      .+..+|..+..-...-....  ..........++.+++.|+.+        ..+.+||..+.
T Consensus        24 ~~~~l~s~~~dg------~v~lWd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~s~d--------~~i~vwd~~~~   87 (304)
T 2ynn_A           24 TEPWVLTTLYSG------RVELWNYETQVEVRSIQVTE--TPVRAGKFIARKNWIIVGSDD--------FRIRVFNYNTG   87 (304)
T ss_dssp             SSSEEEEEETTS------EEEEEETTTTEEEEEEECCS--SCEEEEEEEGGGTEEEEEETT--------SEEEEEETTTC
T ss_pred             CCCEEEEEcCCC------cEEEEECCCCceeEEeeccC--CcEEEEEEeCCCCEEEEECCC--------CEEEEEECCCC
Confidence            566777787663      48888988765432111111  111222223355666777643        45778888775


Q ss_pred             CeEeCCCCCCCCCC-ceEEEE-CCEEEEEccCCCCCCCCCcceEEe
Q 016413          208 KWDSIPPLPSPRYS-PATQLW-RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       208 ~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      +-..  .+...... .+++.. ++.+++.|+.+     ..+..|++
T Consensus        88 ~~~~--~~~~h~~~v~~~~~~~~~~~l~sgs~D-----~~v~lWd~  126 (304)
T 2ynn_A           88 EKVV--DFEAHPDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNW  126 (304)
T ss_dssp             CEEE--EEECCSSCEEEEEECSSSSEEEEEETT-----SCEEEEEG
T ss_pred             cEEE--EEeCCCCcEEEEEEcCCCCEEEEECCC-----CeEEEEEC
Confidence            4211  11111111 122222 45566666653     45778875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=91.75  E-value=8.1  Score=38.60  Aligned_cols=244  Identities=11%  Similarity=0.074  Sum_probs=112.1

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCC-------CCCCCeEEEEeCCCCce--eecCCCCC-CC
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSL-------DYVHSHVDVYNFTDNKW--VDRFDMPK-DM  167 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~-------~~~~~~v~~yd~~~~~W--~~~~~l~~-~~  167 (390)
                      .++.+|..+.+.... .++..+....+-. +++-+++.-.+..       .....+|+++++.+..=  ..+...+. . 
T Consensus       156 ~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~-  232 (693)
T 3iuj_A          156 EIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ-  232 (693)
T ss_dssp             EEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG-
T ss_pred             EEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCC-
Confidence            677778777775443 1121122222333 6654444433321       01235689998877653  12222221 0 


Q ss_pred             CCcceEEE-EeCCEEEEEeceeCCCCCCCCceEEEEECCCC--CeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCC
Q 016413          168 AHSHLGVV-SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTP  244 (390)
Q Consensus       168 ~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  244 (390)
                      .....++. .-+++..++....+.    ..++++.+|..+.  .|+.+.+-..... ......++.||+....+..  ..
T Consensus       233 ~~~~~~~~~SpDg~~l~~~~~~~~----~~~~i~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l~~~t~~~~~--~~  305 (693)
T 3iuj_A          233 HHRYVGATVTEDDRFLLISAANST----SGNRLYVKDLSQENAPLLTVQGDLDADV-SLVDNKGSTLYLLTNRDAP--NR  305 (693)
T ss_dssp             CCSEEEEEECTTSCEEEEEEESSS----SCCEEEEEETTSTTCCCEEEECSSSSCE-EEEEEETTEEEEEECTTCT--TC
T ss_pred             CeEEEEEEEcCCCCEEEEEEccCC----CCcEEEEEECCCCCCceEEEeCCCCceE-EEEeccCCEEEEEECCCCC--CC
Confidence            11122222 334544333322221    1368999998765  6777654222111 1234568899988654321  12


Q ss_pred             CcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CC
Q 016413          245 GLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DE  323 (390)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~  323 (390)
                      .+..+++.  .  +....|+.+.+-.....  +....++.|++..-.++                    ...++++| .+
T Consensus       306 ~l~~~d~~--~--~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g--------------------~~~l~~~d~~g  359 (693)
T 3iuj_A          306 RLVTVDAA--N--PGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDA--------------------TARVEQFDYEG  359 (693)
T ss_dssp             EEEEEETT--S--CCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETT--------------------EEEEEEECTTS
T ss_pred             EEEEEeCC--C--CCccccEEEecCCCCEE--EEEEECCEEEEEEEECC--------------------eeEEEEEECCC
Confidence            23333321  1  12345887654332222  45556677665543322                    12488888 54


Q ss_pred             CCeEECCCCCCCCCcceeEEEEECC-EEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeeccCC
Q 016413          324 MKWKVLPPMPKPNSHIECAWVIVNN-SIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYRP  388 (390)
Q Consensus       324 ~~W~~~~~~~~~~~~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~  388 (390)
                      .....+ .+|....-...+ ...++ .+++. ..+...+        .+++.||+++++...+...
T Consensus       360 ~~~~~l-~~p~~~~~~~~~-~~~d~~~l~~~-~ss~~tP--------~~l~~~d~~~g~~~~l~~~  414 (693)
T 3iuj_A          360 KRVREV-ALPGLGSVSGFN-GKHDDPALYFG-FENYAQP--------PTLYRFEPKSGAISLYRAS  414 (693)
T ss_dssp             CEEEEE-CCSSSSEEEECC-CCTTCSCEEEE-EECSSSC--------CEEEEECTTTCCEEEEECC
T ss_pred             CeeEEe-ecCCCceEEeee-cCCCCCEEEEE-ecCCCCC--------CEEEEEECCCCeEEEEEeC
Confidence            443443 233221100000 01123 33332 2221211        2689999988877766543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=91.67  E-value=3.2  Score=44.52  Aligned_cols=135  Identities=9%  Similarity=0.004  Sum_probs=66.5

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  207 (390)
                      +++.++.|+.++      .+.+||..+.+...+.....    .-.+++...+..++.|+.        -..+..||..+.
T Consensus      1014 dg~~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~----~v~~~~~~~~~~l~~~~~--------dg~v~vwd~~~~ 1075 (1249)
T 3sfz_A         1014 DGKTLISSSEDS------VIQVWNWQTGDYVFLQAHQE----TVKDFRLLQDSRLLSWSF--------DGTVKVWNVITG 1075 (1249)
T ss_dssp             SSSCEEEECSSS------BEEEEETTTTEEECCBCCSS----CEEEEEECSSSEEEEEES--------SSEEEEEETTTT
T ss_pred             CCCEEEEEcCCC------EEEEEECCCCceEEEecCCC----cEEEEEEcCCCcEEEEEC--------CCcEEEEECCCC
Confidence            567777777653      48899999887765433222    222333333334455553        245788888765


Q ss_pred             CeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEE--EECCEE
Q 016413          208 KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACF--VFNDRL  285 (390)
Q Consensus       208 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~--~~~~~i  285 (390)
                      +-...-..........+..-++++++.|+.+     ..+..|++       .+.+  .+..+......-.++  .-++++
T Consensus      1076 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d-----~~v~iwd~-------~~~~--~~~~l~~h~~~v~~~~~s~dg~~ 1141 (1249)
T 3sfz_A         1076 RIERDFTCHQGTVLSCAISSDATKFSSTSAD-----KTAKIWSF-------DLLS--PLHELKGHNGCVRCSAFSLDGIL 1141 (1249)
T ss_dssp             CCCEEEECCSSCCCCEEECSSSSSCEEECCS-----SCCCEECS-------SSSS--CSBCCCCCSSCEEEEEECSSSSE
T ss_pred             ceeEEEcccCCcEEEEEECCCCCEEEEEcCC-----CcEEEEEC-------CCcc--eeeeeccCCCcEEEEEECCCCCE
Confidence            4221111111111112223355666666653     34667764       2221  222222111111222  236778


Q ss_pred             EEEcCCCCC
Q 016413          286 FVVGGQEGD  294 (390)
Q Consensus       286 yv~GG~~~~  294 (390)
                      ++.|+.++.
T Consensus      1142 lat~~~dg~ 1150 (1249)
T 3sfz_A         1142 LATGDDNGE 1150 (1249)
T ss_dssp             EEEEETTSC
T ss_pred             EEEEeCCCE
Confidence            888887653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=91.53  E-value=2.9  Score=38.66  Aligned_cols=100  Identities=9%  Similarity=0.093  Sum_probs=51.6

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      ++.+++.|+.++      .+.+||..+.+-...  +... ...-.+++. -++.+++.|+.++.        +.+||..+
T Consensus       119 ~~~~l~s~s~Dg------~i~vwd~~~~~~~~~--l~~h-~~~V~~v~~~~~~~~l~sgs~D~~--------i~iwd~~~  181 (410)
T 1vyh_C          119 VFSVMVSASEDA------TIKVWDYETGDFERT--LKGH-TDSVQDISFDHSGKLLASCSADMT--------IKLWDFQG  181 (410)
T ss_dssp             SSSEEEEEESSS------CEEEEETTTCCCCEE--ECCC-SSCEEEEEECTTSSEEEEEETTSC--------CCEEETTS
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEE--Eecc-CCcEEEEEEcCCCCEEEEEeCCCe--------EEEEeCCC
Confidence            456888888764      488889887654322  1111 111222333 35677888875543        45677765


Q ss_pred             CCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      ..-  +..+.........+.+  ++..++.|+.+     ..+..|++
T Consensus       182 ~~~--~~~~~~h~~~V~~v~~~p~~~~l~s~s~D-----~~i~~wd~  221 (410)
T 1vyh_C          182 FEC--IRTMHGHDHNVSSVSIMPNGDHIVSASRD-----KTIKMWEV  221 (410)
T ss_dssp             SCE--EECCCCCSSCEEEEEECSSSSEEEEEETT-----SEEEEEET
T ss_pred             Cce--eEEEcCCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEEC
Confidence            432  2222211111222222  45566676653     35677774

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=91.52  E-value=5.6  Score=39.60  Aligned_cols=102  Identities=15%  Similarity=0.055  Sum_probs=48.9

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcce-EEEEe-CC--EEEEEeceeCCCCCCCCceEEEEE
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHL-GVVSD-GR--YIYIVSGQYGPQCRGPTSRTFVLD  203 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~-~~~~~-~~--~iyv~GG~~~~~~~~~~~~v~~yd  203 (390)
                      +++.++.|+.++      .+.++|.....=..+...... .+... +++.. ++  .+++.|+.+        ..+.+||
T Consensus       483 ~~~~l~s~s~D~------~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d--------~~v~vwd  547 (694)
T 3dm0_A          483 DNRQIVSASRDR------TIKLWNTLGECKYTISEGGEG-HRDWVSCVRFSPNTLQPTIVSASWD--------KTVKVWN  547 (694)
T ss_dssp             TSSCEEEEETTS------CEEEECTTSCEEEEECSSTTS-CSSCEEEEEECSCSSSCEEEEEETT--------SCEEEEE
T ss_pred             CCCEEEEEeCCC------EEEEEECCCCcceeeccCCCC-CCCcEEEEEEeCCCCcceEEEEeCC--------CeEEEEE
Confidence            566777777663      377778655432222111111 12222 22222 22  356666543        3477888


Q ss_pred             CCCCCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          204 SETRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       204 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      ..+.+-...  +.........+.+  ++++++.|+.+     ..+..|++
T Consensus       548 ~~~~~~~~~--~~~h~~~v~~v~~spdg~~l~sg~~D-----g~i~iwd~  590 (694)
T 3dm0_A          548 LSNCKLRST--LAGHTGYVSTVAVSPDGSLCASGGKD-----GVVLLWDL  590 (694)
T ss_dssp             TTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SBCEEEET
T ss_pred             CCCCcEEEE--EcCCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEEC
Confidence            876543221  1111111122222  56777777754     35777875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=91.46  E-value=0.64  Score=42.37  Aligned_cols=103  Identities=12%  Similarity=0.111  Sum_probs=51.4

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCC----------CCCCCCcceEEEEe--CCEEEEEeceeCCCCCCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM----------PKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGP  195 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l----------~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~  195 (390)
                      ++.+++.|+.++      .+.+||..+.........          +......-.+++..  ++.+++.|+.+       
T Consensus        55 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------  121 (408)
T 4a11_B           55 EGRYMLSGGSDG------VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD-------  121 (408)
T ss_dssp             TCCEEEEEETTS------CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT-------
T ss_pred             CCCEEEEEcCCC------eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC-------
Confidence            567888888764      488888877654322110          00001112223322  45567777642       


Q ss_pred             CceEEEEECCCCCeEeCCCCCCCCCCceEEEE----CCEEEEEccCCCCCCCCCcceEEe
Q 016413          196 TSRTFVLDSETRKWDSIPPLPSPRYSPATQLW----RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       196 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                       ..+..||..+..-...-..+.+.  .+....    ++.+++.|+.+     ..+..|++
T Consensus       122 -~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~v~~~d~  173 (408)
T 4a11_B          122 -KTLKVWDTNTLQTADVFNFEETV--YSHHMSPVSTKHCLVAVGTRG-----PKVQLCDL  173 (408)
T ss_dssp             -SEEEEEETTTTEEEEEEECSSCE--EEEEECSSCSSCCEEEEEESS-----SSEEEEES
T ss_pred             -CeEEEeeCCCCccceeccCCCce--eeeEeecCCCCCcEEEEEcCC-----CeEEEEeC
Confidence             45788888876543332222211  111111    33466666653     35667764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=91.42  E-value=0.9  Score=40.63  Aligned_cols=23  Identities=13%  Similarity=0.228  Sum_probs=15.9

Q ss_pred             CCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccc
Q 016413          347 NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLV  381 (390)
Q Consensus       347 ~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~  381 (390)
                      ++++++.|+.++.            |.+||+++..
T Consensus       326 ~~~~l~s~~~dg~------------v~iw~~~~~~  348 (369)
T 3zwl_B          326 QGTSYASGGEDGF------------IRLHHFEKSY  348 (369)
T ss_dssp             TSSEEEEEETTSE------------EEEEEECHHH
T ss_pred             CCCEEEEEcCCCe------------EEEEECcccc
Confidence            6778888876543            6777776654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=91.37  E-value=6.4  Score=33.83  Aligned_cols=93  Identities=10%  Similarity=0.056  Sum_probs=48.5

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +++|||.....     ...+.+||+..+.-..+.....   ..-.++++ -++++|+....        ...+.+||+..
T Consensus        88 ~g~l~v~~~~~-----~~~i~~~d~~g~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~~~--------~~~i~~~~~~g  151 (286)
T 1q7f_A           88 SGDIIVTERSP-----THQIQIYNQYGQFVRKFGATIL---QHPRGVTVDNKGRIIVVECK--------VMRVIIFDQNG  151 (286)
T ss_dssp             TTEEEEEECGG-----GCEEEEECTTSCEEEEECTTTC---SCEEEEEECTTSCEEEEETT--------TTEEEEECTTS
T ss_pred             CCeEEEEcCCC-----CCEEEEECCCCcEEEEecCccC---CCceEEEEeCCCCEEEEECC--------CCEEEEEcCCC
Confidence            67899986421     1358899966554433322111   12233444 36788887531        35688999766


Q ss_pred             CCeEeCCCCCCCCCCceEEEE-CCEEEEEcc
Q 016413          207 RKWDSIPPLPSPRYSPATQLW-RGRLHVMGG  236 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG  236 (390)
                      ..-..+........-..++.. +++|||...
T Consensus       152 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          152 NVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             CEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             CEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence            544443211111111223322 578988754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=91.34  E-value=3.1  Score=35.44  Aligned_cols=79  Identities=9%  Similarity=0.042  Sum_probs=44.2

Q ss_pred             CeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC-CCeEeCCCCCCCCC-C
Q 016413          145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET-RKWDSIPPLPSPRY-S  221 (390)
Q Consensus       145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~r~-~  221 (390)
                      ..++++|+.+++...+...+.   . -.+++. -+++.+++++         ...++++|+.+ .+...+........ .
T Consensus        22 ~~i~~~d~~~~~~~~~~~~~~---~-v~~~~~spdg~~l~~~~---------~~~i~~~d~~~~~~~~~~~~~~~~~~~~   88 (297)
T 2ojh_A           22 SSIEIFNIRTRKMRVVWQTPE---L-FEAPNWSPDGKYLLLNS---------EGLLYRLSLAGDPSPEKVDTGFATICNN   88 (297)
T ss_dssp             EEEEEEETTTTEEEEEEEESS---C-CEEEEECTTSSEEEEEE---------TTEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred             eeEEEEeCCCCceeeeccCCc---c-eEeeEECCCCCEEEEEc---------CCeEEEEeCCCCCCceEecccccccccc
Confidence            569999999888765543322   1 222232 3566666653         24689999998 77766654332122 2


Q ss_pred             ceEEEECCEEEEEcc
Q 016413          222 PATQLWRGRLHVMGG  236 (390)
Q Consensus       222 ~~~~~~~~~iyv~GG  236 (390)
                      .....-+++.+++++
T Consensus        89 ~~~~spdg~~l~~~~  103 (297)
T 2ojh_A           89 DHGISPDGALYAISD  103 (297)
T ss_dssp             CCEECTTSSEEEEEE
T ss_pred             ceEECCCCCEEEEEE
Confidence            222233555555554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=91.29  E-value=13  Score=37.09  Aligned_cols=98  Identities=19%  Similarity=0.300  Sum_probs=57.5

Q ss_pred             ceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCc--eeecCCCCCCC------CCcceEEEEeCCEEEEEeceeCCCCC
Q 016413          122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDM------AHSHLGVVSDGRYIYIVSGQYGPQCR  193 (390)
Q Consensus       122 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~------~r~~~~~~~~~~~iyv~GG~~~~~~~  193 (390)
                      .+-++.++.||+....       ..+..+|..+.+  |+.-...+...      .....+.++.+++||+...       
T Consensus        60 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------  125 (668)
T 1kv9_A           60 ATPLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------  125 (668)
T ss_dssp             CCCEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------
T ss_pred             cCCEEECCEEEEECCC-------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------
Confidence            3446779999998642       358888887654  87643322110      0012234567888887642       


Q ss_pred             CCCceEEEEECCCCC--eEeCCCCCC--CCCCceEEEECCEEEEEc
Q 016413          194 GPTSRTFVLDSETRK--WDSIPPLPS--PRYSPATQLWRGRLHVMG  235 (390)
Q Consensus       194 ~~~~~v~~yd~~~~~--W~~~~~~p~--~r~~~~~~~~~~~iyv~G  235 (390)
                        ...+..+|.++.+  |+.-..-+.  .....+.++.++.+|+..
T Consensus       126 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~  169 (668)
T 1kv9_A          126 --DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGN  169 (668)
T ss_dssp             --TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECC
T ss_pred             --CCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeC
Confidence              3568899987764  876442111  122234456788888754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=91.27  E-value=2.8  Score=37.22  Aligned_cols=61  Identities=3%  Similarity=-0.039  Sum_probs=34.2

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  207 (390)
                      ++.+++.|+.++      .+.+||+.+.+-..  .+..+  ....+.......+++.+.         ...+..||....
T Consensus       140 ~~~~l~~~~~dg------~i~vwd~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~  200 (368)
T 3mmy_A          140 NYSCVMTGSWDK------TLKFWDTRSSNPMM--VLQLP--ERCYCADVIYPMAVVATA---------ERGLIVYQLENQ  200 (368)
T ss_dssp             SCEEEEEEETTS------EEEEECSSCSSCSE--EEECS--SCEEEEEEETTEEEEEEG---------GGCEEEEECSSS
T ss_pred             CCCEEEEccCCC------cEEEEECCCCcEEE--EEecC--CCceEEEecCCeeEEEeC---------CCcEEEEEeccc
Confidence            567788888763      48889987664222  22221  223344455665554433         244677777654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=91.26  E-value=1.2  Score=39.70  Aligned_cols=98  Identities=8%  Similarity=0.005  Sum_probs=52.5

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE---eCCEEEEEeceeCCCCCCCCceEEEEEC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS---DGRYIYIVSGQYGPQCRGPTSRTFVLDS  204 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~v~~yd~  204 (390)
                      +++.++.|+.++      .+.+||..+.+-..+.....    .-.++..   .++.+++.|+.+        ..+..||.
T Consensus        97 ~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~l~~~~~d--------g~i~vwd~  158 (368)
T 3mmy_A           97 DGSKVFTASCDK------TAKMWDLSSNQAIQIAQHDA----PVKTIHWIKAPNYSCVMTGSWD--------KTLKFWDT  158 (368)
T ss_dssp             TSSEEEEEETTS------EEEEEETTTTEEEEEEECSS----CEEEEEEEECSSCEEEEEEETT--------SEEEEECS
T ss_pred             CCCEEEEEcCCC------cEEEEEcCCCCceeeccccC----ceEEEEEEeCCCCCEEEEccCC--------CcEEEEEC
Confidence            566777777653      58899998887655433222    1222332   366777777643        45788888


Q ss_pred             CCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEe
Q 016413          205 ETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       205 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      .+.+-  +..+..+....+.....+.+++.+..      ..+..|++
T Consensus       159 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~  197 (368)
T 3mmy_A          159 RSSNP--MMVLQLPERCYCADVIYPMAVVATAE------RGLIVYQL  197 (368)
T ss_dssp             SCSSC--SEEEECSSCEEEEEEETTEEEEEEGG------GCEEEEEC
T ss_pred             CCCcE--EEEEecCCCceEEEecCCeeEEEeCC------CcEEEEEe
Confidence            76542  11112222233344555655554432      24555654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=91.00  E-value=4.4  Score=40.50  Aligned_cols=182  Identities=7%  Similarity=0.033  Sum_probs=86.1

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEE-CCEEEEEecCCCCC-------CCCCeEEEEeCCCCcee--ecCCCCCCC
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLD-------YVHSHVDVYNFTDNKWV--DRFDMPKDM  167 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~-------~~~~~v~~yd~~~~~W~--~~~~l~~~~  167 (390)
                      .++.+|..+.+......++..+. ..++.. +++.++++..+...       ....+++++++.+..-+  .+...+.. 
T Consensus       148 ~i~v~dl~tg~~~~~~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~-  225 (695)
T 2bkl_A          148 VLHVIDVDSGEWSKVDVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD-  225 (695)
T ss_dssp             EEEEEETTTCCBCSSCCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC-
T ss_pred             EEEEEECCCCCCcCCcccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC-
Confidence            57777777766531111221111 223332 56666666654421       12356999999887632  33222221 


Q ss_pred             CCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCc
Q 016413          168 AHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGL  246 (390)
Q Consensus       168 ~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  246 (390)
                      .....+... -+++..++...+..    ..++++.+|..+..|+.+..-...  ....+..++.+|+......  ....+
T Consensus       226 ~~~~~~~~~SpDG~~l~~~~~~~~----~~~~l~~~~~~~~~~~~l~~~~~~--~~~~~~~~g~l~~~s~~~~--~~~~l  297 (695)
T 2bkl_A          226 PTTFLQSDLSRDGKYLFVYILRGW----SENDVYWKRPGEKDFRLLVKGVGA--KYEVHAWKDRFYVLTDEGA--PRQRV  297 (695)
T ss_dssp             TTCEEEEEECTTSCCEEEEEEETT----TEEEEEEECTTCSSCEEEEECSSC--CEEEEEETTEEEEEECTTC--TTCEE
T ss_pred             CEEEEEEEECCCCCEEEEEEeCCC----CceEEEEEcCCCCceEEeecCCCc--eEEEEecCCcEEEEECCCC--CCCEE
Confidence            122223332 35554555443331    256788888777778877532221  1222334666666543221  12233


Q ss_pred             ceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCC
Q 016413          247 EHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG  293 (390)
Q Consensus       247 ~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~  293 (390)
                      ..+++.  .  +....|+.+.+-.....-.+....+++|++....++
T Consensus       298 ~~~d~~--~--~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg  340 (695)
T 2bkl_A          298 FEVDPA--K--PARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDA  340 (695)
T ss_dssp             EEEBTT--B--CSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETT
T ss_pred             EEEeCC--C--CCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECC
Confidence            334320  0  111238776442211111234455888888776543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=90.98  E-value=3.7  Score=37.09  Aligned_cols=102  Identities=11%  Similarity=0.023  Sum_probs=55.6

Q ss_pred             EEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe--CCEEEEEeceeCCCCCCCCceEEEEECCCC
Q 016413          130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (390)
Q Consensus       130 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  207 (390)
                      ++++.|+.++      .+.+||+.+.+......+... ...-.+++..  ++.+++.|+.+        ..+..||..+.
T Consensus        87 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~  151 (383)
T 3ei3_B           87 TTVAVGSKGG------DIILWDYDVQNKTSFIQGMGP-GDAITGMKFNQFNTNQLFVSSIR--------GATTLRDFSGS  151 (383)
T ss_dssp             TEEEEEEBTS------CEEEEETTSTTCEEEECCCST-TCBEEEEEEETTEEEEEEEEETT--------TEEEEEETTSC
T ss_pred             CEEEEEcCCC------eEEEEeCCCcccceeeecCCc-CCceeEEEeCCCCCCEEEEEeCC--------CEEEEEECCCC
Confidence            6788887763      488999988876654332111 1222333343  34677777542        45788998876


Q ss_pred             CeEeCCCCCCCCC-CceEE-EECCEEEEEccCCCCCCCCCcceEEe
Q 016413          208 KWDSIPPLPSPRY-SPATQ-LWRGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       208 ~W~~~~~~p~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      ....+........ -.+++ .-++.+++.|+.+     ..+..|++
T Consensus       152 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~  192 (383)
T 3ei3_B          152 VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST-----GRLLLLGL  192 (383)
T ss_dssp             EEEEEECCCCSSCCEEEEEEETTTTEEEEEETT-----SEEEEEET
T ss_pred             ceEEEeccCCCCCCeEEEEECCCCCEEEEECCC-----CCEEEEEC
Confidence            6555433221111 11222 2245666676653     35666664

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=90.84  E-value=2.5  Score=36.99  Aligned_cols=98  Identities=10%  Similarity=0.150  Sum_probs=51.4

Q ss_pred             CCEEEEEecCCCC-CCCCCeEEEEeCCCCceeecCCCCC--CCCCcceEEEE-eC-CEEEEEeceeCCCCCCCCceEEEE
Q 016413          128 KNLFYVFAGYGSL-DYVHSHVDVYNFTDNKWVDRFDMPK--DMAHSHLGVVS-DG-RYIYIVSGQYGPQCRGPTSRTFVL  202 (390)
Q Consensus       128 ~~~lyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~~l~~--~~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~v~~y  202 (390)
                      ++.||+....... ......+.+||+.+.++..+.. +.  .....-.+++. -+ +.||+...         ...+.+|
T Consensus        28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~~---------~~~l~~~   97 (314)
T 1pjx_A           28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PEVNGYGGIPAGCQCDRDANQLFVADM---------RLGLLVV   97 (314)
T ss_dssp             TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CEETTEECCEEEEEECSSSSEEEEEET---------TTEEEEE
T ss_pred             CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cccCCCCCCCceEEEecCCCcEEEEEC---------CCCEEEE
Confidence            5678887211000 0012459999998888876532 10  00111233443 34 78998763         1368899


Q ss_pred             ECCCCCeEeC-CCCCCC---CCCceEEE-ECCEEEEEcc
Q 016413          203 DSETRKWDSI-PPLPSP---RYSPATQL-WRGRLHVMGG  236 (390)
Q Consensus       203 d~~~~~W~~~-~~~p~~---r~~~~~~~-~~~~iyv~GG  236 (390)
                      |++ .+.+.+ ......   ..-..++. -+++||+...
T Consensus        98 d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~  135 (314)
T 1pjx_A           98 QTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAP  135 (314)
T ss_dssp             ETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEEC
T ss_pred             eCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEec
Confidence            998 777665 322111   11223333 2678888754

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=90.77  E-value=3  Score=36.59  Aligned_cols=101  Identities=9%  Similarity=0.133  Sum_probs=49.2

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      ++++++.|+.++      .+.+||..+.+-..  .+... ...-.+++. -++.+++.|+.+        ..+..||..+
T Consensus        66 ~~~~l~s~s~d~------~i~vwd~~~~~~~~--~~~~h-~~~v~~~~~~~~~~~l~sgs~D--------~~v~lWd~~~  128 (304)
T 2ynn_A           66 RKNWIIVGSDDF------RIRVFNYNTGEKVV--DFEAH-PDYIRSIAVHPTKPYVLSGSDD--------LTVKLWNWEN  128 (304)
T ss_dssp             GGTEEEEEETTS------EEEEEETTTCCEEE--EEECC-SSCEEEEEECSSSSEEEEEETT--------SCEEEEEGGG
T ss_pred             CCCEEEEECCCC------EEEEEECCCCcEEE--EEeCC-CCcEEEEEEcCCCCEEEEECCC--------CeEEEEECCC
Confidence            556777777663      48888987765322  11110 111223333 245666777643        3466777765


Q ss_pred             CCeEeCCCCCCCCCCceEEEE---CCEEEEEccCCCCCCCCCcceEEe
Q 016413          207 RKWDSIPPLPSPRYSPATQLW---RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      . +.....+......-..+.+   ++.+++.|+.+     ..+..|++
T Consensus       129 ~-~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D-----~~v~iwd~  170 (304)
T 2ynn_A          129 N-WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD-----RTVKVWSL  170 (304)
T ss_dssp             T-TEEEEEECCCCSCEEEEEECTTCTTEEEEEETT-----SEEEEEET
T ss_pred             C-cchhhhhcccCCcEEEEEECCCCCCEEEEEeCC-----CeEEEEEC
Confidence            3 2221111111111122222   34677777754     35677774

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=90.68  E-value=5.6  Score=34.57  Aligned_cols=201  Identities=9%  Similarity=0.020  Sum_probs=93.9

Q ss_pred             cccccccCCC--CeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCC-ceeecCCCCCCCCCcceEE
Q 016413           98 TFADLPAPDL--EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN-KWVDRFDMPKDMAHSHLGV  174 (390)
Q Consensus        98 ~~~~~~~~~~--~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~l~~~~~r~~~~~  174 (390)
                      .++.+|..+.  .|+.-..-. .......+.-+++|++.+        .+.+..||++.+ .|+.-.+  .  ....+++
T Consensus        16 ~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs~--------~~~V~~~d~~G~~~W~~~~~--~--~~~~~~~   82 (276)
T 3no2_A           16 KIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFSY--------SKGAKMITRDGRELWNIAAP--A--GCEMQTA   82 (276)
T ss_dssp             EEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEEC--------BSEEEEECTTSCEEEEEECC--T--TCEEEEE
T ss_pred             EEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEeC--------CCCEEEECCCCCEEEEEcCC--C--Ccccccc
Confidence            4556666444  465432110 112222333477888832        135899999433 3764332  1  1112233


Q ss_pred             E-EeCCEEEEEeceeCCCCCCCCceEEEEECCCC-CeEeCC--CCCCC--CCCceEEEECCEEEEEccCCCCCCCCCcce
Q 016413          175 V-SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR-KWDSIP--PLPSP--RYSPATQLWRGRLHVMGGSKENRHTPGLEH  248 (390)
Q Consensus       175 ~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~-~W~~~~--~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  248 (390)
                      . ..++++++....+       ...++.+|+..+ .|+.-.  ..+.+  .........++.+++....     ...+.+
T Consensus        83 ~~~~dG~~lv~~~~~-------~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~-----~~~v~~  150 (276)
T 3no2_A           83 RILPDGNALVAWCGH-------PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA-----TSEVRE  150 (276)
T ss_dssp             EECTTSCEEEEEEST-------TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT-----TTEEEE
T ss_pred             EECCCCCEEEEecCC-------CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC-----CCEEEE
Confidence            3 3466676664310       245777887544 244321  11111  1112233445666665432     123444


Q ss_pred             EEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-C-CC-C
Q 016413          249 WSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-D-EM-K  325 (390)
Q Consensus       249 ~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~-~~-~  325 (390)
                      |+.     + ....|+.-.+.   .........++.+++.+..++                      .+..+| . .+ .
T Consensus       151 ~d~-----~-G~~~w~~~~~~---~~~~~~~~~~g~~~v~~~~~~----------------------~v~~~d~~tG~~~  199 (276)
T 3no2_A          151 IAP-----N-GQLLNSVKLSG---TPFSSAFLDNGDCLVACGDAH----------------------CFVQLNLESNRIV  199 (276)
T ss_dssp             ECT-----T-SCEEEEEECSS---CCCEEEECTTSCEEEECBTTS----------------------EEEEECTTTCCEE
T ss_pred             ECC-----C-CCEEEEEECCC---CccceeEcCCCCEEEEeCCCC----------------------eEEEEeCcCCcEE
Confidence            442     2 34456654321   111133344678888776532                      389999 4 23 7


Q ss_pred             eEECC-CCCCCCC-cceeEEEEECCEEEEEc
Q 016413          326 WKVLP-PMPKPNS-HIECAWVIVNNSIIITG  354 (390)
Q Consensus       326 W~~~~-~~~~~~~-~~~~~~~~~~~~l~v~G  354 (390)
                      |+.-. .++..+. ......+..++.+||..
T Consensus       200 w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          200 RRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             EEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             EEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            77642 2222222 22222344588898886

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=90.63  E-value=6.5  Score=34.05  Aligned_cols=15  Identities=7%  Similarity=0.341  Sum_probs=11.0

Q ss_pred             eeeeeccCCCceEee
Q 016413           52 VASNWALEKSGVVVI   66 (390)
Q Consensus        52 ~~~~~d~~~~~W~~l   66 (390)
                      ++..||..+.+-..+
T Consensus        46 tV~iWd~~tg~~~~~   60 (318)
T 4ggc_A           46 SVYLWSASSGDILQL   60 (318)
T ss_dssp             EEEEEETTTCCEEEE
T ss_pred             EEEEEECCCCCEEEE
Confidence            688888888776554

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=90.53  E-value=9.8  Score=34.48  Aligned_cols=190  Identities=12%  Similarity=0.127  Sum_probs=90.5

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCC--CCCCCCCcceEEEE--eCCEEEEEeceeCCCCCCCCceEEEEEC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD--MPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDS  204 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~--l~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~  204 (390)
                      +..++.|+.++      .+..||+.+.+-...-.  .+......-.++..  .++.+++.|+.++        .+..||+
T Consensus       170 ~~~l~s~s~D~------~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~--------~v~~wd~  235 (380)
T 3iz6_a          170 ETRLITGSGDQ------TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT--------TVRLWDL  235 (380)
T ss_dssp             SSCEEEECTTS------CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS--------CEEEEET
T ss_pred             CCEEEEECCCC------cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC--------eEEEEEC
Confidence            34566676653      48888988776443221  11110111122222  2667888887543        4677887


Q ss_pred             CCC--CeEeCCCCCCCCCCceEEEE-CCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEE-ccCCC------CCCC
Q 016413          205 ETR--KWDSIPPLPSPRYSPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRT-EIPIP------RGGP  274 (390)
Q Consensus       205 ~~~--~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~-~~~~p------~~~~  274 (390)
                      ...  .-..+..-.  ..-.+++.. ++..++.|+.+     ..+..||+       .+.+-.. ....+      .+..
T Consensus       236 ~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~D-----~~i~lwd~-------~~~~~~~~~~~~~~~~~~~~~~v  301 (380)
T 3iz6_a          236 RITSRAVRTYHGHE--GDINSVKFFPDGQRFGTGSDD-----GTCRLFDM-------RTGHQLQVYNREPDRNDNELPIV  301 (380)
T ss_dssp             TTTCCCCEEECCCS--SCCCEEEECTTSSEEEEECSS-----SCEEEEET-------TTTEEEEEECCCCSSSCCSSCSC
T ss_pred             CCCCcceEEECCcC--CCeEEEEEecCCCeEEEEcCC-----CeEEEEEC-------CCCcEEEEecccccccccccCce
Confidence            532  111111100  011122222 55677777654     45777875       2222111 11111      0111


Q ss_pred             ceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCe-EECCCCCCC-CCcceeEEEEECCEEE
Q 016413          275 HRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW-KVLPPMPKP-NSHIECAWVIVNNSII  351 (390)
Q Consensus       275 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W-~~~~~~~~~-~~~~~~~~~~~~~~l~  351 (390)
                      ...+...++++++.|+.++.                      |.++| ...+- ..+..+... .....+.....+++.+
T Consensus       302 ~~~~~s~~g~~l~~g~~dg~----------------------i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  359 (380)
T 3iz6_a          302 TSVAFSISGRLLFAGYSNGD----------------------CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL  359 (380)
T ss_dssp             SEEEECSSSSEEEEECTTSC----------------------EEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEE
T ss_pred             EEEEECCCCCEEEEEECCCC----------------------EEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEE
Confidence            11223336778888876643                      88888 44432 233222211 1122222233478888


Q ss_pred             EEcCCCCCCCcceeeEEeeeEEEeecCcc
Q 016413          352 ITGGTTEKHPMTKRMILVGEVFQFHLDSL  380 (390)
Q Consensus       352 v~GG~~~~~~~~~~~~~~~~v~~yd~~~~  380 (390)
                      +.|+.++.            +.+|++...
T Consensus       360 ~sgs~D~~------------i~iW~~~~~  376 (380)
T 3iz6_a          360 CTGSWDKN------------LKIWAFSGH  376 (380)
T ss_dssp             EEECTTSC------------EEEEECCSS
T ss_pred             EEeeCCCC------------EEEEecCCC
Confidence            88887755            666666543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=90.49  E-value=5.6  Score=34.60  Aligned_cols=138  Identities=7%  Similarity=0.027  Sum_probs=63.8

Q ss_pred             eeeeeccCCCceEeecCCCCCccccccceEEEecCCCch-hHHHhhhcccccccCCCCeEEC-CCCCC--cCC-CceEEE
Q 016413           52 VASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQD-AERFLSATFADLPAPDLEWEQM-PSAPV--PRL-DGAAIQ  126 (390)
Q Consensus        52 ~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~W~~~-~~~~~--~R~-~~~~~~  126 (390)
                      .+.+||+.+.++..+..-..........+++.-.+.+.. ... ....++.+|+. .+...+ .....  +.. -..++.
T Consensus        47 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~  124 (314)
T 1pjx_A           47 EILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAF  124 (314)
T ss_dssp             EEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEE
T ss_pred             EEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEE
Confidence            688899888887765430000000111223322220110 000 11257778877 666555 32211  111 122322


Q ss_pred             -ECCEEEEEecCCC---------CCCCCCeEEEEeCCCCceeecCC-CCCCCCCcceEEEEe-----CC-EEEEEeceeC
Q 016413          127 -IKNLFYVFAGYGS---------LDYVHSHVDVYNFTDNKWVDRFD-MPKDMAHSHLGVVSD-----GR-YIYIVSGQYG  189 (390)
Q Consensus       127 -~~~~lyv~GG~~~---------~~~~~~~v~~yd~~~~~W~~~~~-l~~~~~r~~~~~~~~-----~~-~iyv~GG~~~  189 (390)
                       -++++|+....+.         .......+++||+. .+...+.. +..     ...++..     ++ .||+....  
T Consensus       125 d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~-----~~~i~~~~~~d~dg~~l~v~~~~--  196 (314)
T 1pjx_A          125 DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQF-----PNGIAVRHMNDGRPYQLIVAETP--  196 (314)
T ss_dssp             CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESS-----EEEEEEEECTTSCEEEEEEEETT--
T ss_pred             CCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCC-----cceEEEecccCCCCCEEEEEECC--
Confidence             2568888754321         11123569999987 55544321 111     1233333     34 57776521  


Q ss_pred             CCCCCCCceEEEEECC
Q 016413          190 PQCRGPTSRTFVLDSE  205 (390)
Q Consensus       190 ~~~~~~~~~v~~yd~~  205 (390)
                            ...+++||+.
T Consensus       197 ------~~~i~~~~~~  206 (314)
T 1pjx_A          197 ------TKKLWSYDIK  206 (314)
T ss_dssp             ------TTEEEEEEEE
T ss_pred             ------CCeEEEEECC
Confidence                  3568888865

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=90.33  E-value=2.1  Score=45.83  Aligned_cols=188  Identities=10%  Similarity=0.100  Sum_probs=89.5

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  207 (390)
                      ++..+++|+.++      .+..||..+.+-.....-..  .........-+++..+.|+.+        ..+..||..+.
T Consensus       972 ~g~~l~~g~~~g------~i~i~d~~~~~~~~~~~~h~--~~v~~l~~s~dg~~l~s~~~d--------g~i~vwd~~~~ 1035 (1249)
T 3sfz_A          972 HLEYVAFGDEDG------AIKIIELPNNRVFSSGVGHK--KAVRHIQFTADGKTLISSSED--------SVIQVWNWQTG 1035 (1249)
T ss_dssp             TSSEEEEEETTS------CCEEEETTTTSCEEECCCCS--SCCCCEEECSSSSCEEEECSS--------SBEEEEETTTT
T ss_pred             CCCEEEEEcCCC------CEEEEEcCCCceeeecccCC--CceEEEEECCCCCEEEEEcCC--------CEEEEEECCCC
Confidence            455666676553      47888887765433211111  111212222356667777643        45788998887


Q ss_pred             CeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEE
Q 016413          208 KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV  287 (390)
Q Consensus       208 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv  287 (390)
                      ....+....  ..-.+++...+..++.|+.+     ..+..|++       .+.+-...-..........+..-+++.++
T Consensus      1036 ~~~~~~~~~--~~v~~~~~~~~~~l~~~~~d-----g~v~vwd~-------~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 1101 (1249)
T 3sfz_A         1036 DYVFLQAHQ--ETVKDFRLLQDSRLLSWSFD-----GTVKVWNV-------ITGRIERDFTCHQGTVLSCAISSDATKFS 1101 (1249)
T ss_dssp             EEECCBCCS--SCEEEEEECSSSEEEEEESS-----SEEEEEET-------TTTCCCEEEECCSSCCCCEEECSSSSSCE
T ss_pred             ceEEEecCC--CcEEEEEEcCCCcEEEEECC-----CcEEEEEC-------CCCceeEEEcccCCcEEEEEECCCCCEEE
Confidence            665433211  11222333344445555543     34666764       23322111111111111122334666777


Q ss_pred             EcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceee
Q 016413          288 VGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRM  366 (390)
Q Consensus       288 ~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~  366 (390)
                      .|+.++.                      +.+|| .+.+  .+..+........+.+...++++++.|+.++.       
T Consensus      1102 s~s~d~~----------------------v~iwd~~~~~--~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~------- 1150 (1249)
T 3sfz_A         1102 STSADKT----------------------AKIWSFDLLS--PLHELKGHNGCVRCSAFSLDGILLATGDDNGE------- 1150 (1249)
T ss_dssp             EECCSSC----------------------CCEECSSSSS--CSBCCCCCSSCEEEEEECSSSSEEEEEETTSC-------
T ss_pred             EEcCCCc----------------------EEEEECCCcc--eeeeeccCCCcEEEEEECCCCCEEEEEeCCCE-------
Confidence            7776543                      66676 4332  22223222222222223347778888876544       


Q ss_pred             EEeeeEEEeecCccc
Q 016413          367 ILVGEVFQFHLDSLV  381 (390)
Q Consensus       367 ~~~~~v~~yd~~~~~  381 (390)
                           |.+||+.+.+
T Consensus      1151 -----i~vwd~~~~~ 1160 (1249)
T 3sfz_A         1151 -----IRIWNVSDGQ 1160 (1249)
T ss_dssp             -----CCEEESSSSC
T ss_pred             -----EEEEECCCCc
Confidence                 5567766543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=90.30  E-value=6.7  Score=39.24  Aligned_cols=183  Identities=11%  Similarity=0.032  Sum_probs=84.4

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEE-CCEEEEEecCCCCC----------CCCCeEEEEeCCCCcee--ecCCCC
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLD----------YVHSHVDVYNFTDNKWV--DRFDMP  164 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~----------~~~~~v~~yd~~~~~W~--~~~~l~  164 (390)
                      .++.+|..+.+..... ++... ...++.. +++-++++..+...          .....++++++.+.+-+  .+...+
T Consensus       152 ~i~v~d~~tg~~~~~~-~~~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~  229 (710)
T 2xdw_A          152 TIKFMKVDGAKELPDV-LERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP  229 (710)
T ss_dssp             EEEEEETTTTEEEEEE-EEEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT
T ss_pred             EEEEEECCCCCCCccc-ccCcc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccC
Confidence            5777777776655431 11111 1223333 55544444443320          12356999999887643  221222


Q ss_pred             CCCCCcceEEE-EeCCEEEEEeceeCCCCCCCCceEEEEECCC------C--CeEeCCCCCCCCCCceEEEECCEEEEEc
Q 016413          165 KDMAHSHLGVV-SDGRYIYIVSGQYGPQCRGPTSRTFVLDSET------R--KWDSIPPLPSPRYSPATQLWRGRLHVMG  235 (390)
Q Consensus       165 ~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~------~--~W~~~~~~p~~r~~~~~~~~~~~iyv~G  235 (390)
                      .. .....++. .-+++..++.......   ..++++.+|..+      .  .++.+..-.... .......++.||+.+
T Consensus       230 ~~-~~~~~~~~~SpDg~~l~~~~~~~~~---~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s  304 (710)
T 2xdw_A          230 DE-PKWMGGAELSDDGRYVLLSIREGCD---PVNRLWYCDLQQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKT  304 (710)
T ss_dssp             TC-TTCEEEEEECTTSCEEEEEEECSSS---SCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEE
T ss_pred             CC-CeEEEEEEEcCCCCEEEEEEEccCC---CccEEEEEECcccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEE
Confidence            10 12222233 2345444444322211   157899999875      3  577765422221 112334577888886


Q ss_pred             cCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEE-CCEEEEEcCCCC
Q 016413          236 GSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF-NDRLFVVGGQEG  293 (390)
Q Consensus       236 G~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~  293 (390)
                      .....  ...+..+++.  .  +....|+.+.+-.....-.++... ++++++....++
T Consensus       305 ~~~~~--~~~l~~~d~~--~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g  357 (710)
T 2xdw_A          305 NRHSP--NYRLINIDFT--D--PEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV  357 (710)
T ss_dssp             CTTCT--TCEEEEEETT--S--CCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred             CCCCC--CCEEEEEeCC--C--CCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC
Confidence            54321  2233334321  0  111258876443221111234455 777877765443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=90.28  E-value=1.8  Score=41.90  Aligned_cols=66  Identities=12%  Similarity=-0.032  Sum_probs=33.2

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCC------ceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEE
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDN------KWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTF  200 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~------~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~  200 (390)
                      ++++++.|+.++      .+.+||..+.      ....+..+... ...-.+++. -+++.++.++.+...    ...++
T Consensus        77 ~~~~l~s~~~dg------~v~vw~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~----~~~v~  145 (615)
T 1pgu_A           77 GSQYLCSGDESG------KVIVWGWTFDKESNSVEVNVKSEFQVL-AGPISDISWDFEGRRLCVVGEGRDN----FGVFI  145 (615)
T ss_dssp             TCCEEEEEETTS------EEEEEEEEEEGGGTEEEEEEEEEEECC-SSCEEEEEECTTSSEEEEEECCSSC----SEEEE
T ss_pred             CCCEEEEecCCC------EEEEEeCCCCcccccccccccchhhcc-cccEEEEEEeCCCCEEEEeccCCCC----ccEEE
Confidence            567788887653      4777777544      33333222211 111222232 355666666643321    35677


Q ss_pred             EEEC
Q 016413          201 VLDS  204 (390)
Q Consensus       201 ~yd~  204 (390)
                      .+|.
T Consensus       146 ~~d~  149 (615)
T 1pgu_A          146 SWDS  149 (615)
T ss_dssp             ETTT
T ss_pred             EEEC
Confidence            7773

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=90.26  E-value=3.8  Score=36.30  Aligned_cols=67  Identities=7%  Similarity=0.044  Sum_probs=35.8

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeC----CEEEEEeceeCCCCCCCCceEEEEEC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDG----RYIYIVSGQYGPQCRGPTSRTFVLDS  204 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~v~~yd~  204 (390)
                      .++++.|+.+...   ..+.+||..+.+.........  ...-.+++...    +.+++.|+.+        ..+..||.
T Consensus        31 ~~l~~~~s~~~~d---~~v~iw~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~   97 (357)
T 3i2n_A           31 AKFVTMGNFARGT---GVIQLYEIQHGDLKLLREIEK--AKPIKCGTFGATSLQQRYLATGDFG--------GNLHIWNL   97 (357)
T ss_dssp             SEEEEEEC--CCC---EEEEEEEECSSSEEEEEEEEE--SSCEEEEECTTCCTTTCCEEEEETT--------SCEEEECT
T ss_pred             ceEEEecCccCCC---cEEEEEeCCCCcccceeeecc--cCcEEEEEEcCCCCCCceEEEecCC--------CeEEEEeC
Confidence            3677777653211   358889988877654432222  11122333322    4677777643        34777887


Q ss_pred             CCCC
Q 016413          205 ETRK  208 (390)
Q Consensus       205 ~~~~  208 (390)
                      .+..
T Consensus        98 ~~~~  101 (357)
T 3i2n_A           98 EAPE  101 (357)
T ss_dssp             TSCS
T ss_pred             CCCC
Confidence            7654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=90.06  E-value=14  Score=35.51  Aligned_cols=133  Identities=8%  Similarity=0.046  Sum_probs=67.6

Q ss_pred             CEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEeeeecc
Q 016413          179 RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDG  256 (390)
Q Consensus       179 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~  256 (390)
                      +.+++.|+..       -..+..||..+..... ..+.........+.+  ++++++.|+.+     ..+..|++     
T Consensus       456 ~~~l~~~~~~-------d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~i~iw~~-----  517 (615)
T 1pgu_A          456 QNYVAVGLEE-------GNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVM-----GKILLYDL-----  517 (615)
T ss_dssp             SSEEEEEETT-------TSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEET-----
T ss_pred             CCEEEEeecC-------CCeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCC-----CeEEEeeC-----
Confidence            5566666530       2347889988765532 222222222223333  66777777654     35677774     


Q ss_pred             ccccCCeEEccCCCC-CCCceeEEEE------------CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-C
Q 016413          257 KALEKAWRTEIPIPR-GGPHRACFVF------------NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-D  322 (390)
Q Consensus       257 ~~~~~~W~~~~~~p~-~~~~~~~~~~------------~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~  322 (390)
                        .+  ...+..+.. .......+.+            ++++++.|+.++.                      |.+|| .
T Consensus       518 --~~--~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~----------------------i~iw~~~  571 (615)
T 1pgu_A          518 --QS--REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN----------------------IFIYSVK  571 (615)
T ss_dssp             --TT--TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC----------------------EEEEESS
T ss_pred             --CC--CcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCc----------------------EEEEECC
Confidence              22  223333221 1111233333            6788888887653                      77887 5


Q ss_pred             CC--CeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCC
Q 016413          323 EM--KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEK  359 (390)
Q Consensus       323 ~~--~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~  359 (390)
                      +.  ....+..-   ...........+++ ++.+|.++.
T Consensus       572 ~~~~~~~~~~~h---~~~v~~l~~s~~~~-l~s~~~d~~  606 (615)
T 1pgu_A          572 RPMKIIKALNAH---KDGVNNLLWETPST-LVSSGADAC  606 (615)
T ss_dssp             CTTCCEEETTSS---TTCEEEEEEEETTE-EEEEETTSC
T ss_pred             CCceechhhhcC---ccceEEEEEcCCCC-eEEecCCce
Confidence            43  33333221   22222233456788 777776544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=89.98  E-value=17  Score=36.35  Aligned_cols=98  Identities=16%  Similarity=0.223  Sum_probs=57.4

Q ss_pred             ceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCc--eeecCCCCCCC---C---CcceEEEEeCCEEEEEeceeCCCCC
Q 016413          122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDM---A---HSHLGVVSDGRYIYIVSGQYGPQCR  193 (390)
Q Consensus       122 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~---~---r~~~~~~~~~~~iyv~GG~~~~~~~  193 (390)
                      .+.++.++.||+....       ..+..+|..+.+  |+.-...+...   .   ....+.++.+++||+...       
T Consensus        64 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------  129 (689)
T 1yiq_A           64 ATPIVVDGVMYTTGPF-------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------  129 (689)
T ss_dssp             CCCEEETTEEEEECGG-------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------
T ss_pred             ecCEEECCEEEEEcCC-------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------
Confidence            3446779999997542       348889987654  87643322100   0   012234667898888642       


Q ss_pred             CCCceEEEEECCCCC--eEeCCC-CCC--CCCCceEEEECCEEEEEc
Q 016413          194 GPTSRTFVLDSETRK--WDSIPP-LPS--PRYSPATQLWRGRLHVMG  235 (390)
Q Consensus       194 ~~~~~v~~yd~~~~~--W~~~~~-~p~--~r~~~~~~~~~~~iyv~G  235 (390)
                        -..+..+|.++.+  |+.-.. -+.  .....+-++.++.+|+-.
T Consensus       130 --dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~  174 (689)
T 1yiq_A          130 --DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGN  174 (689)
T ss_dssp             --TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECC
T ss_pred             --CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEe
Confidence              3568889987654  876542 111  112233456788888743

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=89.66  E-value=6.2  Score=35.56  Aligned_cols=65  Identities=2%  Similarity=-0.039  Sum_probs=36.3

Q ss_pred             CeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC
Q 016413          145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP  214 (390)
Q Consensus       145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~  214 (390)
                      ..++++|+.+.+-..+..-+.   ........- +++.+++.......  .....++.+|..+...+.+..
T Consensus       168 ~~l~~~d~~~g~~~~l~~~~~---~~~~~~~sp~dg~~l~~~~~~~~~--~~~~~l~~~d~~~~~~~~l~~  233 (388)
T 3pe7_A          168 CRLMRVDLKTGESTVILQENQ---WLGHPIYRPYDDSTVAFCHEGPHD--LVDARMWLINEDGTNMRKVKT  233 (388)
T ss_dssp             EEEEEEETTTCCEEEEEEESS---CEEEEEEETTEEEEEEEEECSCTT--TSSCSEEEEETTSCCCEESCC
T ss_pred             ceEEEEECCCCceEEeecCCc---cccccEECCCCCCEEEEEEecCCC--CCcceEEEEeCCCCceEEeee
Confidence            579999999887655543221   222222223 45544444322111  124679999998877666654

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=89.58  E-value=19  Score=36.44  Aligned_cols=152  Identities=14%  Similarity=0.164  Sum_probs=76.0

Q ss_pred             cccccccCCCCeEECCC-C-----CC---cCCCceEEEE----CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCC-C
Q 016413           98 TFADLPAPDLEWEQMPS-A-----PV---PRLDGAAIQI----KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD-M  163 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~-~-----~~---~R~~~~~~~~----~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-l  163 (390)
                      .+++..-...+|+.+.. +     +.   .......+.+    .+.||+..|..........+++=+=...+|+++.. .
T Consensus        44 gv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~  123 (763)
T 3a0f_A           44 GTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPV  123 (763)
T ss_dssp             CEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCTTTCSCCEEEEESSTTSSCEEEECSS
T ss_pred             cEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccccCCCCceEEEECCCCCCceeccCCc
Confidence            35555556778998865 3     21   1122222333    25788876631111112345554445679998752 1


Q ss_pred             CCC---CCCcc-eEEEEe---CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCC---CCceEEEE----CC
Q 016413          164 PKD---MAHSH-LGVVSD---GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPR---YSPATQLW----RG  229 (390)
Q Consensus       164 ~~~---~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r---~~~~~~~~----~~  229 (390)
                      +.+   ..|.. ..+++.   .+.+|+.+.         ...+++=+-.-.+|+++..++...   .....+.+    .+
T Consensus       124 ~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~---------~~~l~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~  194 (763)
T 3a0f_A          124 PMGANDMGRNGGERLAVNPHWTDELWFGSR---------TQGLWRSTDRAQTWSRMNQLPDSSTYGIGIISVIFDPKNVG  194 (763)
T ss_dssp             CCCTTSTTTTSBCCEEECTTSTTCEEEECS---------SSCEEEESSTTSSCEECTTSCCCSCTTTCEEEEEECSSSTT
T ss_pred             ccCccccCccccceEEECCCCCCEEEEEeC---------CCcEEEECCCCcCccccccCcccCCCccceEEEEECCCCCC
Confidence            110   12321 234443   367887641         133555444567899998766432   22222222    34


Q ss_pred             EEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCC
Q 016413          230 RLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIP  270 (390)
Q Consensus       230 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p  270 (390)
                      .||+.....+       ..|...     ....+|+.+...|
T Consensus       195 ~~~~~~~~~g-------~v~~S~-----DgG~tW~~~~~~~  223 (763)
T 3a0f_A          195 TAYVASHAVG-------GLWVTW-----DGGANWSQVGGQP  223 (763)
T ss_dssp             CEEEEESSTT-------CEEEES-----SSSSSCEECTTCC
T ss_pred             EEEEEEeCCC-------eEEEEC-----CCCCCccccCCCc
Confidence            6777643211       222211     2456899886555

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=89.37  E-value=5.2  Score=34.88  Aligned_cols=104  Identities=11%  Similarity=0.108  Sum_probs=51.0

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCC--CceeecCCCCCCCCCcceEEEEe---CCEEEEEeceeCCCCCCCCceEEEE
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTD--NKWVDRFDMPKDMAHSHLGVVSD---GRYIYIVSGQYGPQCRGPTSRTFVL  202 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~~~l~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~y  202 (390)
                      ++++++.|+.++      .+.+||..+  ..++.+..+... ...-.+++..   ++.+++.|+.++        .+.+|
T Consensus        22 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~d~~~l~s~~~dg--------~v~vw   86 (351)
T 3f3f_A           22 YGRHVATCSSDQ------HIKVFKLDKDTSNWELSDSWRAH-DSSIVAIDWASPEYGRIIASASYDK--------TVKLW   86 (351)
T ss_dssp             SSSEEEEEETTS------EEEEEEECSSSCCEEEEEEEECC-SSCEEEEEECCGGGCSEEEEEETTS--------CEEEE
T ss_pred             CCCEEEEeeCCC------eEEEEECCCCCCcceecceeccC-CCcEEEEEEcCCCCCCEEEEEcCCC--------eEEEE
Confidence            456777777653      466676654  345444333221 1122233333   367777777543        36667


Q ss_pred             ECCCC-------CeEeCCCCCCCCCCceEEEE--C--CEEEEEccCCCCCCCCCcceEEe
Q 016413          203 DSETR-------KWDSIPPLPSPRYSPATQLW--R--GRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       203 d~~~~-------~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      |..+.       .|+.+..+.........+..  +  +.+++.|+.+     ..+..|++
T Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iwd~  141 (351)
T 3f3f_A           87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND-----GILRLYDA  141 (351)
T ss_dssp             EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----CEEEEEEC
T ss_pred             ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC-----CcEEEecC
Confidence            76553       34444333222222222222  2  5566666643     34666664

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=89.34  E-value=6.8  Score=36.09  Aligned_cols=82  Identities=11%  Similarity=0.132  Sum_probs=46.2

Q ss_pred             eEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceE
Q 016413          146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT  224 (390)
Q Consensus       146 ~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~  224 (390)
                      .|.++|..+.+-..+-.+... ...-.+++. -++.+++.|+.+        ..+.+||.++.+-  +..+........+
T Consensus       126 tV~lWd~~tg~~~~~~~~~~~-~~~V~sv~fspdg~~lasgs~D--------g~v~iWd~~~~~~--~~~~~~h~~~v~~  194 (420)
T 4gga_A          126 SVYLWSASSGDILQLLQMEQP-GEYISSVAWIKEGNYLAVGTSS--------AEVQLWDVQQQKR--LRNMTSHSARVGS  194 (420)
T ss_dssp             EEEEEETTTCCEEEEEECCST-TCCEEEEEECTTSSEEEEEETT--------SCEEEEETTTTEE--EEEECCCSSCEEE
T ss_pred             EEEEEECCCCCEEEEEEecCC-CCcEEEEEECCCCCEEEEEECC--------CeEEEEEcCCCcE--EEEEeCCCCceEE
Confidence            589999998876655444331 111223333 366777888753        3478889877643  2222222223334


Q ss_pred             EEECCEEEEEccCC
Q 016413          225 QLWRGRLHVMGGSK  238 (390)
Q Consensus       225 ~~~~~~iyv~GG~~  238 (390)
                      ...++.+.+.|+.+
T Consensus       195 ~s~~~~~l~sgs~d  208 (420)
T 4gga_A          195 LSWNSYILSSGSRS  208 (420)
T ss_dssp             EEEETTEEEEEETT
T ss_pred             EeeCCCEEEEEeCC
Confidence            45567777777654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=89.14  E-value=6.6  Score=34.60  Aligned_cols=95  Identities=8%  Similarity=0.062  Sum_probs=52.6

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +++||+.+..+      ..+++||+.+.+...+.....   ..-.+++. -++++|+....+.    .....+++||+.+
T Consensus        55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~---~~~~~i~~~~dg~l~v~~~~~~----~~~~~i~~~d~~~  121 (333)
T 2dg1_A           55 QGQLFLLDVFE------GNIFKINPETKEIKRPFVSHK---ANPAAIKIHKDGRLFVCYLGDF----KSTGGIFAATENG  121 (333)
T ss_dssp             TSCEEEEETTT------CEEEEECTTTCCEEEEEECSS---SSEEEEEECTTSCEEEEECTTS----SSCCEEEEECTTS
T ss_pred             CCCEEEEECCC------CEEEEEeCCCCcEEEEeeCCC---CCcceEEECCCCcEEEEeCCCC----CCCceEEEEeCCC
Confidence            56788876543      359999999888776532111   22233444 3678888753221    1135799999988


Q ss_pred             CCeEe-CCCCCCCCCCceEEEE-CCEEEEEc
Q 016413          207 RKWDS-IPPLPSPRYSPATQLW-RGRLHVMG  235 (390)
Q Consensus       207 ~~W~~-~~~~p~~r~~~~~~~~-~~~iyv~G  235 (390)
                      ..-+. +........-..++.. ++++|+..
T Consensus       122 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~  152 (333)
T 2dg1_A          122 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTD  152 (333)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEE
T ss_pred             CEEEEEEccCccCCcccceEECCCCCEEEEe
Confidence            77553 2222111111222222 56788764

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=89.12  E-value=21  Score=36.30  Aligned_cols=199  Identities=12%  Similarity=0.158  Sum_probs=98.9

Q ss_pred             cccccccCCCCeEECCCCCC-----cCCCceEEEEC---CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCC-CCCC--
Q 016413           98 TFADLPAPDLEWEQMPSAPV-----PRLDGAAIQIK---NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD-MPKD--  166 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~-----~R~~~~~~~~~---~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-l~~~--  166 (390)
                      .+++.+-...+|+.+...+.     .+.-.++++-.   +.||+..|....... ..+++=+-...+|+.+.. ++.+  
T Consensus        38 gv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~-~~v~~S~DgG~TW~~~~~~~~~~~~  116 (789)
T 1sqj_A           38 GAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW-AAFYVSEDRGQSFTIYESPFPMGAN  116 (789)
T ss_dssp             CEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC-CEEEEESSTTSEEEEEECSSCCCTT
T ss_pred             CEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc-cEEEEECCCCCcceeccCCcccCcc
Confidence            45666656779999865331     12233333332   468887664321111 345555556779998742 1110  


Q ss_pred             -CCC-cceEEEEe---CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCC---CCCCceEEEE----CCEEEEE
Q 016413          167 -MAH-SHLGVVSD---GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS---PRYSPATQLW----RGRLHVM  234 (390)
Q Consensus       167 -~~r-~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~---~r~~~~~~~~----~~~iyv~  234 (390)
                       ..| ....+++.   .+.+|+ |..        ...+++=+-.-++|+++..+|.   .-.....+.+    .+.||+.
T Consensus       117 ~~~~~~~~~iav~p~~~~~v~~-g~~--------~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~  187 (789)
T 1sqj_A          117 DMGRNNGERLAVNPFNSNEVWM-GTR--------TEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYAS  187 (789)
T ss_dssp             STTTTSCCCEEEETTEEEEEEE-ECS--------SSCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEE
T ss_pred             CCCccceeEEEEcCCCCCEEEE-Eec--------cCCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEE
Confidence             012 12334443   356666 321        1335555445678999876442   1122223332    2467776


Q ss_pred             ccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCC-------C---------ceeEEEE--CCEEEEEcCCC-CCC
Q 016413          235 GGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG-------P---------HRACFVF--NDRLFVVGGQE-GDF  295 (390)
Q Consensus       235 GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~-------~---------~~~~~~~--~~~iyv~GG~~-~~~  295 (390)
                      ....       ...|...     ....+|+.+..+|...       .         .+.+++.  .+.||+..+.. ...
T Consensus       188 ~~~~-------~~v~~S~-----DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~  255 (789)
T 1sqj_A          188 ATAP-------QGMYVTH-----DGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPW  255 (789)
T ss_dssp             ESST-------TCEEEES-----STTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSS
T ss_pred             EcCC-------CeEEEEc-----CCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCCC
Confidence            4321       1222211     2456899887555432       0         0222222  78888874211 000


Q ss_pred             CCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCC
Q 016413          296 MAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMP  333 (390)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~  333 (390)
                                     ......+++.+ ...+|+.+...+
T Consensus       256 ---------------~g~~g~l~~S~DgG~tW~~~~~~~  279 (789)
T 1sqj_A          256 ---------------GVTFGEVWRQNRTSGAWDDITPRV  279 (789)
T ss_dssp             ---------------CCCCCCEEEEETTTCCEEECCCCT
T ss_pred             ---------------CCCCceEEEEeCCCCceEECcCCC
Confidence                           00112477777 677999987644

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=88.46  E-value=4.9  Score=36.56  Aligned_cols=63  Identities=8%  Similarity=0.011  Sum_probs=34.2

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +++.++.|+.++      .+.++|..+.+-...-....+  ........-+++..+.||.++        .+.+||..+
T Consensus        77 ~~~~l~s~s~D~------~v~iWd~~~~~~~~~~~~h~~--~v~~~~~s~~g~~las~~~d~--------~v~iw~~~~  139 (380)
T 3iz6_a           77 EKNWIVSASQDG------RLIVWNALTSQKTHAIKLHCP--WVMECAFAPNGQSVACGGLDS--------ACSIFNLSS  139 (380)
T ss_dssp             TSSCEEEEETTS------EEEEEETTTTEEEEEEECCCT--TCCCCEECTTSSEEEECCSSS--------CCEEEECCC
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCccceEEecCCC--CEEEEEECCCCCEEEEeeCCC--------cEEEEECCC
Confidence            456777777763      488888877654332111111  111112234667778887643        345666654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=88.25  E-value=4.1  Score=39.16  Aligned_cols=98  Identities=9%  Similarity=0.030  Sum_probs=46.6

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +++.++.|+.++      .+..||...+.-..+.....    .-.+++. -++++++.++.+        ..+..||...
T Consensus       396 dg~~l~~~~~d~------~v~~~~~~~~~~~~~~~~~~----~v~~~~~s~d~~~l~~~~~d--------~~v~~w~~~~  457 (577)
T 2ymu_A          396 DGQTIASASDDK------TVKLWNRNGQLLQTLTGHSS----SVWGVAFSPDDQTIASASDD--------KTVKLWNRNG  457 (577)
T ss_dssp             TSSCEEEEETTS------EEEEECTTCCEEEEEECCSS----CEEEEEECTTSSEEEEEETT--------SEEEEEETTS
T ss_pred             CCCEEEEEeCCC------EEEEEeCCCCEEEEecCCCC----CeEEEEECCCCCEEEEEcCC--------CEEEEEECCC
Confidence            556777777653      47778865443333322111    1122333 356666666532        3467778655


Q ss_pred             CCeEeCCCCCCCCCCceEE-EECCEEEEEccCCCCCCCCCcceEE
Q 016413          207 RKWDSIPPLPSPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWS  250 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~  250 (390)
                      ..-..+.....  .-.+++ .-++++++.|+.+     ..+..|+
T Consensus       458 ~~~~~~~~~~~--~v~~~~~spd~~~las~~~d-----~~i~iw~  495 (577)
T 2ymu_A          458 QLLQTLTGHSS--SVRGVAFSPDGQTIASASDD-----KTVKLWN  495 (577)
T ss_dssp             CEEEEEECCSS--CEEEEEECTTSCEEEEEETT-----SEEEEEE
T ss_pred             CEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCC-----CEEEEEc
Confidence            43333322111  111222 2256666666643     2455665

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=88.23  E-value=8.3  Score=33.60  Aligned_cols=217  Identities=10%  Similarity=0.068  Sum_probs=101.3

Q ss_pred             ccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccCCCCeEE
Q 016413           32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQ  111 (390)
Q Consensus        32 ~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~  111 (390)
                      ++.||.+.-. .+       .+.+||+.+..-..+.. +..     ..+++...+...-..  ....++.+|+.+.+++.
T Consensus        24 ~~~l~~~d~~-~~-------~i~~~d~~~~~~~~~~~-~~~-----~~~i~~~~dG~l~v~--~~~~l~~~d~~~g~~~~   87 (297)
T 3g4e_A           24 SNSLLFVDIP-AK-------KVCRWDSFTKQVQRVTM-DAP-----VSSVALRQSGGYVAT--IGTKFCALNWKEQSAVV   87 (297)
T ss_dssp             TTEEEEEETT-TT-------EEEEEETTTCCEEEEEC-SSC-----EEEEEEBTTSSEEEE--ETTEEEEEETTTTEEEE
T ss_pred             CCEEEEEECC-CC-------EEEEEECCCCcEEEEeC-CCc-----eEEEEECCCCCEEEE--ECCeEEEEECCCCcEEE
Confidence            3566666644 22       67889988776544332 111     112222221111111  12368888888877766


Q ss_pred             CCCCCC--cCCCceEEEE--CCEEEEEecCCC-----CCCCCCeEEEEeCCCCceeec-CCCCCCCCCcceEEEEe--CC
Q 016413          112 MPSAPV--PRLDGAAIQI--KNLFYVFAGYGS-----LDYVHSHVDVYNFTDNKWVDR-FDMPKDMAHSHLGVVSD--GR  179 (390)
Q Consensus       112 ~~~~~~--~R~~~~~~~~--~~~lyv~GG~~~-----~~~~~~~v~~yd~~~~~W~~~-~~l~~~~~r~~~~~~~~--~~  179 (390)
                      +.....  +......+.+  ++++|+..-...     .......++++|+.. +...+ ..+..     ..+++..  +.
T Consensus        88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~-----pngi~~spdg~  161 (297)
T 3g4e_A           88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDI-----SNGLDWSLDHK  161 (297)
T ss_dssp             EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESB-----EEEEEECTTSC
T ss_pred             EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeecccc-----ccceEEcCCCC
Confidence            544321  1111122222  567777421111     011234689998864 33322 22211     1233332  44


Q ss_pred             EEEEEeceeCCCCCCCCceEEEEEC--CCCCeEe---CCCCCCCCCC-ceEEE-ECCEEEEEccCCCCCCCCCcceEEee
Q 016413          180 YIYIVSGQYGPQCRGPTSRTFVLDS--ETRKWDS---IPPLPSPRYS-PATQL-WRGRLHVMGGSKENRHTPGLEHWSIA  252 (390)
Q Consensus       180 ~iyv~GG~~~~~~~~~~~~v~~yd~--~~~~W~~---~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~  252 (390)
                      .||+....        ...+++||.  .+.....   +..++..... ..+++ -++.|||.....     ..+.+|+  
T Consensus       162 ~lyv~~~~--------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~-----~~v~~~d--  226 (297)
T 3g4e_A          162 IFYYIDSL--------SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG-----GRVIRLD--  226 (297)
T ss_dssp             EEEEEEGG--------GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT-----TEEEEEC--
T ss_pred             EEEEecCC--------CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC-----CEEEEEc--
Confidence            68887532        356788875  4444321   1112111111 12333 257888875321     1244454  


Q ss_pred             eeccccccCCeEEccCCCCCCCceeEEEEC----CEEEEEcCCC
Q 016413          253 VKDGKALEKAWRTEIPIPRGGPHRACFVFN----DRLFVVGGQE  292 (390)
Q Consensus       253 ~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~----~~iyv~GG~~  292 (390)
                           +.+.+....-.+|...  ..++.++    +.|||.....
T Consensus       227 -----~~tG~~~~~i~~p~~~--~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          227 -----PVTGKRLQTVKLPVDK--TTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             -----TTTCCEEEEEECSSSB--EEEEEEESGGGCEEEEEEBCT
T ss_pred             -----CCCceEEEEEECCCCC--ceEEEEeCCCCCEEEEEcCCc
Confidence                 5556655444455332  3445553    4788886543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=88.12  E-value=2.1  Score=37.65  Aligned_cols=66  Identities=8%  Similarity=-0.065  Sum_probs=40.8

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      ++.||++.-..      ..+.+||+.+++-.... ++.   +.. +++. -++.+|+..          ...+.+||+++
T Consensus        24 ~~~l~~~d~~~------~~i~~~d~~~~~~~~~~-~~~---~~~-~i~~~~dG~l~v~~----------~~~l~~~d~~~   82 (297)
T 3g4e_A           24 SNSLLFVDIPA------KKVCRWDSFTKQVQRVT-MDA---PVS-SVALRQSGGYVATI----------GTKFCALNWKE   82 (297)
T ss_dssp             TTEEEEEETTT------TEEEEEETTTCCEEEEE-CSS---CEE-EEEEBTTSSEEEEE----------TTEEEEEETTT
T ss_pred             CCEEEEEECCC------CEEEEEECCCCcEEEEe-CCC---ceE-EEEECCCCCEEEEE----------CCeEEEEECCC
Confidence            46788876432      46999999987654332 221   212 2333 356666642          24688999998


Q ss_pred             CCeEeCCC
Q 016413          207 RKWDSIPP  214 (390)
Q Consensus       207 ~~W~~~~~  214 (390)
                      .+++.+..
T Consensus        83 g~~~~~~~   90 (297)
T 3g4e_A           83 QSAVVLAT   90 (297)
T ss_dssp             TEEEEEEE
T ss_pred             CcEEEEEe
Confidence            88877654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=88.03  E-value=8.8  Score=34.13  Aligned_cols=23  Identities=17%  Similarity=0.222  Sum_probs=14.8

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCc
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNK  156 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~  156 (390)
                      +++.++.||.++      .+..||+....
T Consensus       129 ~~~~l~s~~~d~------~i~~wd~~~~~  151 (343)
T 2xzm_R          129 DNRQILSAGAER------EIKLWNILGEC  151 (343)
T ss_dssp             STTEEEEEETTS------CEEEEESSSCE
T ss_pred             CCCEEEEEcCCC------EEEEEeccCCc
Confidence            456677777663      37778876443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=87.90  E-value=2.8  Score=38.46  Aligned_cols=100  Identities=8%  Similarity=0.079  Sum_probs=53.0

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-CCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +++.++.|+.++      .+.+||..+.+-...  +... ...-.+++.. ++..++.|+.+        ..+.+||..+
T Consensus       134 dg~~l~s~~~d~------~i~iwd~~~~~~~~~--~~~h-~~~v~~~~~~p~~~~l~s~s~d--------~~v~iwd~~~  196 (393)
T 1erj_A          134 DGKFLATGAEDR------LIRIWDIENRKIVMI--LQGH-EQDIYSLDYFPSGDKLVSGSGD--------RTVRIWDLRT  196 (393)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEE--ECCC-SSCEEEEEECTTSSEEEEEETT--------SEEEEEETTT
T ss_pred             CCCEEEEEcCCC------eEEEEECCCCcEEEE--EccC-CCCEEEEEEcCCCCEEEEecCC--------CcEEEEECCC
Confidence            567778887763      488899887764332  1110 1112233332 45556666532        4577888887


Q ss_pred             CCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      .+....-...  ..-.+++..  ++++++.|+.+     ..+..|++
T Consensus       197 ~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~s~d-----~~v~iwd~  236 (393)
T 1erj_A          197 GQCSLTLSIE--DGVTTVAVSPGDGKYIAAGSLD-----RAVRVWDS  236 (393)
T ss_dssp             TEEEEEEECS--SCEEEEEECSTTCCEEEEEETT-----SCEEEEET
T ss_pred             CeeEEEEEcC--CCcEEEEEECCCCCEEEEEcCC-----CcEEEEEC
Confidence            6543321111  111122222  56777777754     35677774

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=87.62  E-value=21  Score=35.29  Aligned_cols=18  Identities=11%  Similarity=-0.114  Sum_probs=13.5

Q ss_pred             CceEEEEECCCCCeEeCC
Q 016413          196 TSRTFVLDSETRKWDSIP  213 (390)
Q Consensus       196 ~~~v~~yd~~~~~W~~~~  213 (390)
                      ...++++|..+.+-..+.
T Consensus       234 ~~~l~~~d~~~~~~~~~~  251 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQ  251 (706)
T ss_dssp             EEEEEEEETTTTEEEECC
T ss_pred             eeEEEEEECCCCceEeec
Confidence            467999999887765554

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=86.79  E-value=5.1  Score=33.41  Aligned_cols=53  Identities=15%  Similarity=0.148  Sum_probs=30.7

Q ss_pred             EEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEe--C----CCCCCCCCCceEEEE--CCEEEEEccC
Q 016413          173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDS--I----PPLPSPRYSPATQLW--RGRLHVMGGS  237 (390)
Q Consensus       173 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~--~----~~~p~~r~~~~~~~~--~~~iyv~GG~  237 (390)
                      +++..++++|+|=|          ..+|+++.....+..  +    +.+|..  --++...  ++++|+|=|.
T Consensus        28 Ai~~~~g~~y~Fkg----------~~~wr~~~~~~~~~p~~I~~~wp~Lp~~--iDAa~~~~~~~~iyfFkG~   88 (207)
T 1pex_A           28 AITSLRGETMIFKD----------RFFWRLHPQQVDAELFLTKSFWPELPNR--IDAAYEHPSHDLIFIFRGR   88 (207)
T ss_dssp             EEEEETTEEEEEET----------TEEEEECSSSSCCEEEEHHHHCTTSCSS--CCEEEEETTTTEEEEEETT
T ss_pred             EEEeCCCcEEEEEC----------CEEEEEeCCCcCCCceehhHhccCCCCC--ccEEEEeccCCcEEEEccC
Confidence            45568999999965          447777765544322  1    134422  1123333  5899999764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=86.76  E-value=21  Score=35.55  Aligned_cols=28  Identities=14%  Similarity=0.111  Sum_probs=18.6

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD  162 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~  162 (390)
                      +++.++++..       ..++++|+.+.+...+..
T Consensus       162 DG~~la~~~~-------~~i~~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          162 KGGFVSFIRG-------RNLWVIDLASGRQMQLTA  189 (741)
T ss_dssp             TSSEEEEEET-------TEEEEEETTTTEEEECCC
T ss_pred             CCCEEEEEeC-------CcEEEEecCCCCEEEecc
Confidence            5555555432       269999999888776644

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=86.66  E-value=30  Score=35.20  Aligned_cols=234  Identities=13%  Similarity=0.172  Sum_probs=117.0

Q ss_pred             CCCeEECCCCCCcCCCceEEEE---CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCC---CCCcceEEEEe--
Q 016413          106 DLEWEQMPSAPVPRLDGAAIQI---KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKD---MAHSHLGVVSD--  177 (390)
Q Consensus       106 ~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~---~~r~~~~~~~~--  177 (390)
                      ..+|+.+.+....| -.++++.   .+.+|+. +..      .-+++-+-...+|+.+...+.+   ..+...++++.  
T Consensus         3 ~~~W~~~~~~~~g~-i~~i~~~p~~~~~~~a~-~~~------ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~   74 (789)
T 1sqj_A            3 HYEFKNVAIGGGGY-ITGIVAHPKTKDLLYAR-TDI------GGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPN   74 (789)
T ss_dssp             -CEEEECCCCBCSC-EEEEEECSSSTTCEEEE-ESS------SCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETT
T ss_pred             cccceEccCCCCCc-EEEEEECCCCCCEEEEE-ecC------CCEEEecCCCCCeeECccCCCcccccCCceeEEEECCC
Confidence            35799887633222 2223322   2446653 322      1378877788999997653211   11334455553  


Q ss_pred             -CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC-CCC-----CC-CCceEEEE---CCEEEEEccCCCCCCCCCc
Q 016413          178 -GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP-LPS-----PR-YSPATQLW---RGRLHVMGGSKENRHTPGL  246 (390)
Q Consensus       178 -~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~-~p~-----~r-~~~~~~~~---~~~iyv~GG~~~~~~~~~~  246 (390)
                       .+.||+..|.....   ....+++-+-.-.+|+++.. .+.     .| ..+.+++.   .+.+|+. ...       .
T Consensus        75 ~~~~i~~~~g~~~~~---~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g-~~~-------~  143 (789)
T 1sqj_A           75 NPDRLYLAQGRYVGD---EWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMG-TRT-------E  143 (789)
T ss_dssp             EEEEEEEEECSCTTS---SCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEE-CSS-------S
T ss_pred             CCCEEEEEeCccCCC---cccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEE-ecc-------C
Confidence             25688876532101   11456665556678998852 221     22 22344444   3456663 311       1


Q ss_pred             ceEEeeeeccccccCCeEEccCCCC---CCCceeEEEE----CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEe
Q 016413          247 EHWSIAVKDGKALEKAWRTEIPIPR---GGPHRACFVF----NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYM  319 (390)
Q Consensus       247 ~~~~~~~~~~~~~~~~W~~~~~~p~---~~~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  319 (390)
                      .+|...     ....+|+.+..+|.   .......+.+    .+.||+......                      .+++
T Consensus       144 gl~~S~-----DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~----------------------~v~~  196 (789)
T 1sqj_A          144 GIWKSS-----DRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQ----------------------GMYV  196 (789)
T ss_dssp             CEEEES-----STTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESSTT----------------------CEEE
T ss_pred             CEEEEC-----CCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcCCC----------------------eEEE
Confidence            233321     25678999875442   1122233333    245666543211                      1554


Q ss_pred             eC-CCCCeEECCCCCCCC----------------CcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccce
Q 016413          320 LD-DEMKWKVLPPMPKPN----------------SHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVI  382 (390)
Q Consensus       320 yd-~~~~W~~~~~~~~~~----------------~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W  382 (390)
                      =. ...+|+.+..++...                ..+..++...++.||+..+........    ....+++.+-...+|
T Consensus       197 S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g----~~g~l~~S~DgG~tW  272 (789)
T 1sqj_A          197 THDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWGV----TFGEVWRQNRTSGAW  272 (789)
T ss_dssp             ESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSSCC----CCCCEEEEETTTCCE
T ss_pred             EcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCCCCC----CCceEEEEeCCCCce
Confidence            43 567999987554321                002222112278888874321100000    112588888888999


Q ss_pred             eeccCCC
Q 016413          383 IYHYRPP  389 (390)
Q Consensus       383 ~~v~~~P  389 (390)
                      +.+...|
T Consensus       273 ~~~~~~~  279 (789)
T 1sqj_A          273 DDITPRV  279 (789)
T ss_dssp             EECCCCT
T ss_pred             EECcCCC
Confidence            9887544

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=86.15  E-value=2.3  Score=39.65  Aligned_cols=20  Identities=20%  Similarity=0.203  Sum_probs=13.5

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTD  154 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~  154 (390)
                      +.+++.|+.++      .|.+||..+
T Consensus       141 ~~~lat~~~dg------~V~vwd~~~  160 (430)
T 2xyi_A          141 ACVIATKTPSS------DVLVFDYTK  160 (430)
T ss_dssp             EEEEEEECSSS------CEEEEEGGG
T ss_pred             CcEEEEECCCC------cEEEEECCC
Confidence            46777777653      377888764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=85.69  E-value=9.9  Score=36.39  Aligned_cols=61  Identities=8%  Similarity=-0.044  Sum_probs=31.5

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +++.++.|+.++      .+..||.....-..+.....   . -.+++. -+++.++.|+.+        ..+..||...
T Consensus       355 ~g~~l~~~~~dg------~v~~~~~~~~~~~~~~~~~~---~-v~~~~~s~dg~~l~~~~~d--------~~v~~~~~~~  416 (577)
T 2ymu_A          355 DGQTIASASDDK------TVKLWNRNGQLLQTLTGHSS---S-VRGVAFSPDGQTIASASDD--------KTVKLWNRNG  416 (577)
T ss_dssp             TSSEEEEEETTS------EEEEEETTCCEEEEEECCSS---C-EEEEEECTTSSCEEEEETT--------SEEEEECTTC
T ss_pred             CCCEEEEEeCCC------EEEEEcCCCCEEEEecCCCC---C-eEEEEECCCCCEEEEEeCC--------CEEEEEeCCC
Confidence            566777776553      47778865554443322211   1 112222 356666666532        3466777543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=85.60  E-value=12  Score=32.87  Aligned_cols=99  Identities=10%  Similarity=0.068  Sum_probs=47.5

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-------CCEEEEEeceeCCCCCCCCceEE
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-------GRYIYIVSGQYGPQCRGPTSRTF  200 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~v~  200 (390)
                      ++.+++.|+.++      .+.+||+....-..+..-..    .-.++...       ++.+++.|+.+        ..+.
T Consensus       118 ~~~~l~s~s~D~------~i~vwd~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~~~~~l~s~~~d--------~~i~  179 (319)
T 3frx_A          118 KASMIISGSRDK------TIKVWTIKGQCLATLLGHND----WVSQVRVVPNEKADDDSVTIISAGND--------KMVK  179 (319)
T ss_dssp             TSCEEEEEETTS------CEEEEETTSCEEEEECCCSS----CEEEEEECCC------CCEEEEEETT--------SCEE
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCeEEEEeccCC----cEEEEEEccCCCCCCCccEEEEEeCC--------CEEE
Confidence            467788888764      37778876554333221111    11122221       23355666543        3477


Q ss_pred             EEECCCCCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          201 VLDSETRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       201 ~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      .||..+.+-..  .+.........+.+  ++++++.|+.+     ..+..|++
T Consensus       180 ~wd~~~~~~~~--~~~~h~~~v~~~~~sp~g~~l~s~~~d-----g~i~iwd~  225 (319)
T 3frx_A          180 AWNLNQFQIEA--DFIGHNSNINTLTASPDGTLIASAGKD-----GEIMLWNL  225 (319)
T ss_dssp             EEETTTTEEEE--EECCCCSCEEEEEECTTSSEEEEEETT-----CEEEEEET
T ss_pred             EEECCcchhhe--eecCCCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEEC
Confidence            78876643221  11111111112222  56677777654     35677774

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=85.52  E-value=8.6  Score=37.20  Aligned_cols=91  Identities=10%  Similarity=0.046  Sum_probs=44.0

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEE-C-CEEEEEecCCCCCCCCCeEEEEeC--CCCceeecCCCCCCCCCcceE
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-K-NLFYVFAGYGSLDYVHSHVDVYNF--TDNKWVDRFDMPKDMAHSHLG  173 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~-~-~~lyv~GG~~~~~~~~~~v~~yd~--~~~~W~~~~~l~~~~~r~~~~  173 (390)
                      .+..+|..+.+-..  .++....-|.++.. + .+||+.+ .+      +.|.+||+  .+.+-  +..++.  ...-..
T Consensus       160 ~V~v~D~~t~~~~~--~i~~g~~~~~v~~spdg~~l~v~~-~d------~~V~v~D~~~~t~~~--~~~i~~--g~~p~~  226 (543)
T 1nir_A          160 QIALVDGDSKKIVK--VIDTGYAVHISRMSASGRYLLVIG-RD------ARIDMIDLWAKEPTK--VAEIKI--GIEARS  226 (543)
T ss_dssp             EEEEEETTTCCEEE--EEECSTTEEEEEECTTSCEEEEEE-TT------SEEEEEETTSSSCEE--EEEEEC--CSEEEE
T ss_pred             eEEEEECCCceEEE--EEecCcccceEEECCCCCEEEEEC-CC------CeEEEEECcCCCCcE--EEEEec--CCCcce
Confidence            56666766654322  11111112344333 3 3566654 32      46999999  55442  333332  122233


Q ss_pred             EEEe-----CC-EEEEEeceeCCCCCCCCceEEEEECCCCCe
Q 016413          174 VVSD-----GR-YIYIVSGQYGPQCRGPTSRTFVLDSETRKW  209 (390)
Q Consensus       174 ~~~~-----~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W  209 (390)
                      +++.     ++ .+|+.. ..       ...+.++|..+.+-
T Consensus       227 va~sp~~~~dg~~l~v~~-~~-------~~~v~v~D~~t~~~  260 (543)
T 1nir_A          227 VESSKFKGYEDRYTIAGA-YW-------PPQFAIMDGETLEP  260 (543)
T ss_dssp             EEECCSTTCTTTEEEEEE-EE-------SSEEEEEETTTCCE
T ss_pred             EEeCCCcCCCCCEEEEEE-cc-------CCeEEEEecccccc
Confidence            4443     44 555543 21       34577888877543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=85.49  E-value=17  Score=31.30  Aligned_cols=87  Identities=11%  Similarity=0.011  Sum_probs=50.4

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCCC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  207 (390)
                      +.||+++..+      ..+.+||+.++ .+.+.. +.   ..-.+++. -++++|+...        ....+.+||+.+.
T Consensus        40 ~~l~~~~~~~------~~i~~~~~~~~-~~~~~~-~~---~~~~~l~~~~dg~l~v~~~--------~~~~i~~~d~~~g  100 (296)
T 3e5z_A           40 SAVIFSDVRQ------NRTWAWSDDGQ-LSPEMH-PS---HHQNGHCLNKQGHLIACSH--------GLRRLERQREPGG  100 (296)
T ss_dssp             TEEEEEEGGG------TEEEEEETTSC-EEEEES-SC---SSEEEEEECTTCCEEEEET--------TTTEEEEECSTTC
T ss_pred             CEEEEEeCCC------CEEEEEECCCC-eEEEEC-CC---CCcceeeECCCCcEEEEec--------CCCeEEEEcCCCC
Confidence            3588887543      35999999987 554432 21   12233444 3677887652        1356899999888


Q ss_pred             CeEeCCCCC----CCCCCceEEEECCEEEEE
Q 016413          208 KWDSIPPLP----SPRYSPATQLWRGRLHVM  234 (390)
Q Consensus       208 ~W~~~~~~p----~~r~~~~~~~~~~~iyv~  234 (390)
                      +.+.+....    ..+-...++.-+++||+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vt  131 (296)
T 3e5z_A          101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFS  131 (296)
T ss_dssp             CEEEEECEETTEECCCCCCEEECTTSCEEEE
T ss_pred             cEEEEeeccCCCCCCCCCCEEECCCCCEEEE
Confidence            876653211    111122233336788886

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=85.37  E-value=7.9  Score=33.77  Aligned_cols=76  Identities=16%  Similarity=0.205  Sum_probs=38.0

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCC--CCcceEEEE--eCCEEEEEeceeCCC-CCC--CCceEEE
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM--AHSHLGVVS--DGRYIYIVSGQYGPQ-CRG--PTSRTFV  201 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~--~r~~~~~~~--~~~~iyv~GG~~~~~-~~~--~~~~v~~  201 (390)
                      ..+|+.+..+      ..+.++|+.+.+-...-..+.+.  ...-..++.  .+..||+.....+.. ...  ....+.+
T Consensus        46 ~~l~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v  119 (337)
T 1pby_B           46 RIAYATVNKS------ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL  119 (337)
T ss_dssp             SEEEEEETTT------TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred             CEEEEEeCCC------CeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEE
Confidence            3677776532      46999999887644321221100  001112333  244777764221100 000  1377999


Q ss_pred             EECCCCCeE
Q 016413          202 LDSETRKWD  210 (390)
Q Consensus       202 yd~~~~~W~  210 (390)
                      ||+.+.+..
T Consensus       120 ~d~~~~~~~  128 (337)
T 1pby_B          120 YDAETLSRR  128 (337)
T ss_dssp             EETTTTEEE
T ss_pred             EECCCCcEE
Confidence            999876543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=85.18  E-value=13  Score=33.26  Aligned_cols=128  Identities=14%  Similarity=0.052  Sum_probs=61.9

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEE--CCE-EEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEE
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNL-FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV  174 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~--~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~  174 (390)
                      .++.+|..+.+...+..  ...........  +++ |+.... .........++.+|+.+..+..+.. ..+ .......
T Consensus       169 ~l~~~d~~~g~~~~~~~--~~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~-~~~-~~~~~~~  243 (396)
T 3c5m_A          169 RLIKVDIETGELEVIHQ--DTAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE-HAE-GESCTHE  243 (396)
T ss_dssp             EEEEEETTTCCEEEEEE--ESSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-CCT-TEEEEEE
T ss_pred             eEEEEECCCCcEEeecc--CCcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-cCC-Cccccce
Confidence            56677776666554432  11111222222  244 444432 2211122469999998888777654 211 1111122


Q ss_pred             EE-eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEE-CCEEEEEcc
Q 016413          175 VS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGG  236 (390)
Q Consensus       175 ~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG  236 (390)
                      +. -+++.+++.......   ....++++|+.+.+.+.+...+.  .. ....- +++++++.+
T Consensus       244 ~~spdg~~l~~~~~~~~~---~~~~l~~~d~~~g~~~~l~~~~~--~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          244 FWIPDGSAMAYVSYFKGQ---TDRVIYKANPETLENEEVMVMPP--CS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             EECTTSSCEEEEEEETTT---CCEEEEEECTTTCCEEEEEECCS--EE-EEEECSSSSEEEEEE
T ss_pred             EECCCCCEEEEEecCCCC---ccceEEEEECCCCCeEEeeeCCC--CC-CCccCCCCceEEEec
Confidence            22 245433343333221   13459999998887776654432  11 22233 666666654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=85.09  E-value=9.7  Score=34.21  Aligned_cols=63  Identities=3%  Similarity=-0.103  Sum_probs=35.3

Q ss_pred             CeEEEEeCCCCceeecCCCCCCCCCcceEEEEe--CCE-EEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC
Q 016413          145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRY-IYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP  214 (390)
Q Consensus       145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~  214 (390)
                      ..++.+|+.+.+...+...+    ......+..  ++. |+.... ....  .....++.+|..+..++.+..
T Consensus       168 ~~l~~~d~~~g~~~~~~~~~----~~~~~~~~sp~dg~~l~~~~~-~~~~--~~~~~l~~~d~~~~~~~~l~~  233 (396)
T 3c5m_A          168 CRLIKVDIETGELEVIHQDT----AWLGHPIYRPFDDSTVGFCHE-GPHD--LVDARMWLVNEDGSNVRKIKE  233 (396)
T ss_dssp             EEEEEEETTTCCEEEEEEES----SCEEEEEEETTEEEEEEEEEC-SCSS--SCSCCCEEEETTSCCCEESSC
T ss_pred             ceEEEEECCCCcEEeeccCC----cccccceECCCCCCEEEEEec-CCCC--CCCceEEEEECCCCceeEeec
Confidence            46899999988876654321    112222222  344 444432 1110  113579999998888777754

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=84.37  E-value=11  Score=33.80  Aligned_cols=108  Identities=10%  Similarity=-0.001  Sum_probs=54.6

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcc-eEEE-
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSH-LGVV-  175 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~-~~~~-  175 (390)
                      .++.+|..+.+-..+...+..........-+++.+++...+      ..++++|+.+.+-..+...+..  ... ...+ 
T Consensus        61 ~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~------~~l~~~d~~~g~~~~~~~~~~~--~~~~~~~~~  132 (388)
T 3pe7_A           61 NYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG------RNLMRVDLATLEENVVYQVPAE--WVGYGTWVA  132 (388)
T ss_dssp             EEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT------TEEEEEETTTCCEEEEEECCTT--EEEEEEEEE
T ss_pred             eEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC------CeEEEEECCCCcceeeeechhh--cccccceeE
Confidence            57777877777666655443222122233355444444432      3689999998876655544431  111 1111 


Q ss_pred             EeCCEEEEEeceeCCC--------------CCCCCceEEEEECCCCCeEeCC
Q 016413          176 SDGRYIYIVSGQYGPQ--------------CRGPTSRTFVLDSETRKWDSIP  213 (390)
Q Consensus       176 ~~~~~iyv~GG~~~~~--------------~~~~~~~v~~yd~~~~~W~~~~  213 (390)
                      .-++++++.--.....              .......++++|+.+.+-+.+.
T Consensus       133 ~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~  184 (388)
T 3pe7_A          133 NSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL  184 (388)
T ss_dssp             CTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE
T ss_pred             CCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee
Confidence            2244433321111000              0012478999999887765554

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=84.33  E-value=23  Score=31.97  Aligned_cols=24  Identities=4%  Similarity=0.014  Sum_probs=16.4

Q ss_pred             CCEEEEEeceeCCCCCCCCceEEEEECCCCCe
Q 016413          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKW  209 (390)
Q Consensus       178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W  209 (390)
                      ++.+++.|+.+        ..+.+||..+...
T Consensus        93 ~~~~l~s~s~d--------g~v~vw~~~~~~~  116 (402)
T 2aq5_A           93 NDNVIASGSED--------CTVMVWEIPDGGL  116 (402)
T ss_dssp             CTTEEEEEETT--------SEEEEEECCTTCC
T ss_pred             CCCEEEEEeCC--------CeEEEEEccCCCC
Confidence            56778887643        4578888877643

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=83.88  E-value=22  Score=32.90  Aligned_cols=64  Identities=11%  Similarity=0.040  Sum_probs=33.4

Q ss_pred             CceEEEEEC--C-CCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCC--CCCCcceEEeeeeccccccCCeE
Q 016413          196 TSRTFVLDS--E-TRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR--HTPGLEHWSIAVKDGKALEKAWR  264 (390)
Q Consensus       196 ~~~v~~yd~--~-~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~~~~~~~~~~~~~W~  264 (390)
                      ...+.+||.  . ...++.+..++....-.+++...+.+++..+.....  ....+..|.+.     ..+++|+
T Consensus       329 d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~-----~~~~~~~  397 (450)
T 2vdu_B          329 TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN-----LNENSFV  397 (450)
T ss_dssp             CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE-----TTTTEEE
T ss_pred             CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE-----cCCCeEE
Confidence            355777877  3 344555544433323334556667788776653221  13345555542     4555664

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=83.64  E-value=17  Score=32.22  Aligned_cols=102  Identities=10%  Similarity=0.084  Sum_probs=47.4

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCce-----eecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEE
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKW-----VDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFV  201 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W-----~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~  201 (390)
                      ++.+++.|+.++      .+.++|+.+..-     .....+... ...-.+++. -++.+.+.|+.+        ..+..
T Consensus        38 d~~~l~sgs~D~------~v~iWd~~~~~~~~~~~~~~~~l~~h-~~~V~~~~~~~~~~~l~s~s~D--------~~v~l  102 (343)
T 2xzm_R           38 DSPVLISGSRDK------TVMIWKLYEEEQNGYFGIPHKALTGH-NHFVSDLALSQENCFAISSSWD--------KTLRL  102 (343)
T ss_dssp             CCCEEEEEETTS------CEEEEEECSSCCSSBSEEEEEEECCC-SSCEEEEEECSSTTEEEEEETT--------SEEEE
T ss_pred             CCCEEEEEcCCC------EEEEEECCcCCcccccccccchhccC-CCceEEEEECCCCCEEEEEcCC--------CcEEE
Confidence            556888888774      366666654321     111111110 011122222 245566666643        45778


Q ss_pred             EECCCCCeEeCCCCCCCCCC-ceEEE-ECCEEEEEccCCCCCCCCCcceEEe
Q 016413          202 LDSETRKWDSIPPLPSPRYS-PATQL-WRGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       202 yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      ||..+.+-...  +...... .+++. -+++.++.||.+     ..+..|++
T Consensus       103 wd~~~~~~~~~--~~~h~~~v~~v~~sp~~~~l~s~~~d-----~~i~~wd~  147 (343)
T 2xzm_R          103 WDLRTGTTYKR--FVGHQSEVYSVAFSPDNRQILSAGAE-----REIKLWNI  147 (343)
T ss_dssp             EETTSSCEEEE--EECCCSCEEEEEECSSTTEEEEEETT-----SCEEEEES
T ss_pred             EECCCCcEEEE--EcCCCCcEEEEEECCCCCEEEEEcCC-----CEEEEEec
Confidence            88877653221  1111111 12222 245566666653     35677775

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=83.14  E-value=13  Score=32.73  Aligned_cols=83  Identities=14%  Similarity=0.083  Sum_probs=44.1

Q ss_pred             ceEEEE--CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCC--CCCCcceEEEEe--CCEEEEEeceeCCCC---
Q 016413          122 GAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK--DMAHSHLGVVSD--GRYIYIVSGQYGPQC---  192 (390)
Q Consensus       122 ~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~--~~~r~~~~~~~~--~~~iyv~GG~~~~~~---  192 (390)
                      ++++..  ++.|||.-..       ..+.++|+.+...+.+.....  +. ..-..+++.  ++.||+.-.......   
T Consensus        83 ~gi~~~~~~g~l~v~d~~-------~~i~~~d~~~g~~~~~~~~~~~~~~-~~p~~i~~d~~~G~l~v~d~~~~~~~~~~  154 (322)
T 2fp8_A           83 YDISYNLQNNQLYIVDCY-------YHLSVVGSEGGHATQLATSVDGVPF-KWLYAVTVDQRTGIVYFTDVSTLYDDRGV  154 (322)
T ss_dssp             EEEEEETTTTEEEEEETT-------TEEEEECTTCEECEEEESEETTEEC-SCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred             ceEEEcCCCCcEEEEECC-------CCEEEEeCCCCEEEEecccCCCCcc-cccceEEEecCCCEEEEECCccccccccc
Confidence            344444  5789987422       237889988776555432111  11 122334443  578998742110000   


Q ss_pred             ------CCCCceEEEEECCCCCeEeC
Q 016413          193 ------RGPTSRTFVLDSETRKWDSI  212 (390)
Q Consensus       193 ------~~~~~~v~~yd~~~~~W~~~  212 (390)
                            ......+++||+.+.+.+.+
T Consensus       155 ~~~~~~~~~~g~v~~~d~~~~~~~~~  180 (322)
T 2fp8_A          155 QQIMDTSDKTGRLIKYDPSTKETTLL  180 (322)
T ss_dssp             HHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred             ceehcccCCCceEEEEeCCCCEEEEe
Confidence                  01236799999987765543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=83.05  E-value=22  Score=31.32  Aligned_cols=66  Identities=11%  Similarity=0.027  Sum_probs=41.8

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK  208 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  208 (390)
                      +.+|+++-..      ..+++||+.+++...+. ++.   .....+..-++++++...          ..+++||+.+.+
T Consensus        61 ~~l~~~d~~~------~~i~~~d~~~~~~~~~~-~~~---~v~~i~~~~dg~l~v~~~----------~gl~~~d~~~g~  120 (326)
T 2ghs_A           61 GTAWWFNILE------RELHELHLASGRKTVHA-LPF---MGSALAKISDSKQLIASD----------DGLFLRDTATGV  120 (326)
T ss_dssp             TEEEEEEGGG------TEEEEEETTTTEEEEEE-CSS---CEEEEEEEETTEEEEEET----------TEEEEEETTTCC
T ss_pred             CEEEEEECCC------CEEEEEECCCCcEEEEE-CCC---cceEEEEeCCCeEEEEEC----------CCEEEEECCCCc
Confidence            6788886442      36999999988765432 221   222222335788887541          348999998888


Q ss_pred             eEeCCC
Q 016413          209 WDSIPP  214 (390)
Q Consensus       209 W~~~~~  214 (390)
                      .+.+..
T Consensus       121 ~~~~~~  126 (326)
T 2ghs_A          121 LTLHAE  126 (326)
T ss_dssp             EEEEEC
T ss_pred             EEEEee
Confidence            876644

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=82.99  E-value=37  Score=33.17  Aligned_cols=201  Identities=9%  Similarity=-0.112  Sum_probs=92.5

Q ss_pred             CeEEEEeCC--C-CceeecCCCCCC--CCCcceEEEEeCCEEEEEeceeCC--CCCCCCceEEEEECCC------CCeEe
Q 016413          145 SHVDVYNFT--D-NKWVDRFDMPKD--MAHSHLGVVSDGRYIYIVSGQYGP--QCRGPTSRTFVLDSET------RKWDS  211 (390)
Q Consensus       145 ~~v~~yd~~--~-~~W~~~~~l~~~--~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~v~~yd~~~------~~W~~  211 (390)
                      ..++.+|..  + ..-..+...+..  ..+.......-+++.+++...+..  ........++++|..+      ..-+.
T Consensus       102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  181 (662)
T 3azo_A          102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE  181 (662)
T ss_dssp             CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE
T ss_pred             CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE
Confidence            458999987  4 665666554311  012222222235554455444311  0001246899999988      66666


Q ss_pred             CC-CCCCCCCCceEEEECCEEEEEccCCCCC-C--CCCcceEEeeeeccccc-cC---CeEEccCCCCCCCceeEEE-EC
Q 016413          212 IP-PLPSPRYSPATQLWRGRLHVMGGSKENR-H--TPGLEHWSIAVKDGKAL-EK---AWRTEIPIPRGGPHRACFV-FN  282 (390)
Q Consensus       212 ~~-~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~--~~~~~~~~~~~~~~~~~-~~---~W~~~~~~p~~~~~~~~~~-~~  282 (390)
                      +. .-.. ........-+++..++....... .  ...+..|++       . +.   +...+..-.. ......+. -+
T Consensus       182 l~~~~~~-~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~-------~~~g~~~~~~~l~~~~~-~~~~~~~~spd  252 (662)
T 3azo_A          182 LSDDAHR-FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARV-------TEDGRFADTRTLLGGPE-EAIAQAEWAPD  252 (662)
T ss_dssp             SSCSCSS-EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEE-------CTTSCEEEEEEEEEETT-BCEEEEEECTT
T ss_pred             EEecCCC-cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEE-------CCCCcccccEEeCCCCC-ceEcceEECCC
Confidence            54 2211 11111222345444443322211 0  123444443       3 34   2333322111 11112222 26


Q ss_pred             CEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCC----Ccc-eeEEEEE-CCEEEEEcC
Q 016413          283 DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPN----SHI-ECAWVIV-NNSIIITGG  355 (390)
Q Consensus       283 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~----~~~-~~~~~~~-~~~l~v~GG  355 (390)
                      ++||+.+..++.                    ..++.+| .+.+++.+.......    -.. ...++.. ++++++.+.
T Consensus       253 g~l~~~~~~~~~--------------------~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~  312 (662)
T 3azo_A          253 GSLIVATDRTGW--------------------WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG  312 (662)
T ss_dssp             SCEEEEECTTSS--------------------CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB
T ss_pred             CeEEEEECCCCC--------------------eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE
Confidence            777777654431                    2499998 577888775432211    000 0112333 677777665


Q ss_pred             CCCCCCcceeeEEeeeEEEeecCccceeec
Q 016413          356 TTEKHPMTKRMILVGEVFQFHLDSLVIIYH  385 (390)
Q Consensus       356 ~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v  385 (390)
                      . +..          .+|.+|+++.....+
T Consensus       313 ~-~~~----------~l~~~d~~~~~~~~l  331 (662)
T 3azo_A          313 K-GAA----------VLGILDPESGELVDA  331 (662)
T ss_dssp             S-SSC----------EEEEEETTTTEEEEC
T ss_pred             c-Ccc----------EEEEEECCCCcEEEe
Confidence            5 332          477778776655554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=82.84  E-value=25  Score=31.06  Aligned_cols=23  Identities=9%  Similarity=0.109  Sum_probs=16.2

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCc
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNK  156 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~  156 (390)
                      ++.+++.||.++      .+.+||..+.+
T Consensus        47 d~~~l~sg~~Dg------~v~iwd~~~~~   69 (343)
T 3lrv_A           47 DKWVCMCRCEDG------ALHFTQLKDSK   69 (343)
T ss_dssp             EEEEEEEEEETT------EEEEEEESSSS
T ss_pred             CCCEEEEECCCC------cEEEEECCCCc
Confidence            567888888774      47777776654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=82.55  E-value=23  Score=30.46  Aligned_cols=149  Identities=7%  Similarity=-0.033  Sum_probs=69.9

Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccCCCCeEECC
Q 016413           34 FMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMP  113 (390)
Q Consensus        34 ~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~  113 (390)
                      .||+++.. .+       .+.+||+.+. ...+......     ..+++.-.+...-....-...+..+|+.+.+.+.+.
T Consensus        41 ~l~~~~~~-~~-------~i~~~~~~~~-~~~~~~~~~~-----~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~  106 (296)
T 3e5z_A           41 AVIFSDVR-QN-------RTWAWSDDGQ-LSPEMHPSHH-----QNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIA  106 (296)
T ss_dssp             EEEEEEGG-GT-------EEEEEETTSC-EEEEESSCSS-----EEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEE
T ss_pred             EEEEEeCC-CC-------EEEEEECCCC-eEEEECCCCC-----cceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEe
Confidence            36666644 33       6788998877 5554432211     122222211111111111235788888777766553


Q ss_pred             CCC-Cc---CCCceEEEECCEEEEE----ecCCC-------CCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-e
Q 016413          114 SAP-VP---RLDGAAIQIKNLFYVF----AGYGS-------LDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-D  177 (390)
Q Consensus       114 ~~~-~~---R~~~~~~~~~~~lyv~----GG~~~-------~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~  177 (390)
                      ... ..   +....++.-++++|+.    |..+.       .......++++|+. .+...+..-.    ....+++. -
T Consensus       107 ~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~----~~~~gi~~s~  181 (296)
T 3e5z_A          107 DSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDR----VKPNGLAFLP  181 (296)
T ss_dssp             CEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCC----SSEEEEEECT
T ss_pred             eccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCC----CCCccEEECC
Confidence            211 11   1112222236788886    43210       11112479999987 5544432211    11123333 3


Q ss_pred             CCEEEEEeceeCCCCCCCCceEEEEECC-CCCe
Q 016413          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSE-TRKW  209 (390)
Q Consensus       178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~-~~~W  209 (390)
                      ++++++...        ....+++||+. +.+.
T Consensus       182 dg~~lv~~~--------~~~~i~~~~~~~~g~~  206 (296)
T 3e5z_A          182 SGNLLVSDT--------GDNATHRYCLNARGET  206 (296)
T ss_dssp             TSCEEEEET--------TTTEEEEEEECSSSCE
T ss_pred             CCCEEEEeC--------CCCeEEEEEECCCCcC
Confidence            565654432        13578888876 3444

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=82.15  E-value=39  Score=32.84  Aligned_cols=26  Identities=8%  Similarity=0.071  Sum_probs=18.2

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceee
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD  159 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~  159 (390)
                      +++.++.|+.++      .+..+|..+..-..
T Consensus       335 dg~~l~s~s~D~------~v~~Wd~~~~~~~~  360 (611)
T 1nr0_A          335 DGKTLFSADAEG------HINSWDISTGISNR  360 (611)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTCCEEE
T ss_pred             CCCEEEEEeCCC------cEEEEECCCCceee
Confidence            566777777764      47888988776544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=81.77  E-value=19  Score=31.22  Aligned_cols=67  Identities=10%  Similarity=0.022  Sum_probs=32.7

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCce---eecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEEC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKW---VDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDS  204 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W---~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~  204 (390)
                      +++++.||.|+      .+.++|+.+.+-   .....+... ...-.+++. -++.+++.|+.+        ..+..++.
T Consensus        51 ~~~l~S~s~D~------~i~vWd~~~~~~~~~~~~~~l~~h-~~~V~~~~~s~dg~~l~s~~~d--------~~i~~~~~  115 (340)
T 4aow_A           51 PDMILSASRDK------TIIMWKLTRDETNYGIPQRALRGH-SHFVSDVVISSDGQFALSGSWD--------GTLRLWDL  115 (340)
T ss_dssp             TTEEEEEETTS------CEEEEEECCSSSCSEEEEEEECCC-SSCEEEEEECTTSSEEEEEETT--------SEEEEEET
T ss_pred             CCEEEEEcCCC------eEEEEECCCCCcccceeeEEEeCC-CCCEEEEEECCCCCEEEEEccc--------ccceEEee
Confidence            46888888774      366666554432   111112110 011112222 356667777643        34666776


Q ss_pred             CCCCeE
Q 016413          205 ETRKWD  210 (390)
Q Consensus       205 ~~~~W~  210 (390)
                      ......
T Consensus       116 ~~~~~~  121 (340)
T 4aow_A          116 TTGTTT  121 (340)
T ss_dssp             TTTEEE
T ss_pred             ccccee
Confidence            665443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=81.50  E-value=13  Score=33.78  Aligned_cols=93  Identities=15%  Similarity=0.194  Sum_probs=44.3

Q ss_pred             CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCC-ceEEEE-CCEEEEEccCCCCCCCCCcceEEeeeec
Q 016413          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYS-PATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKD  255 (390)
Q Consensus       178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~  255 (390)
                      +++.++.|+.+        ..+.+||..+.+-...  +...... .+++.. ++..++.|+.+     ..+..|++    
T Consensus       134 dg~~l~s~~~d--------~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~----  194 (393)
T 1erj_A          134 DGKFLATGAED--------RLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDL----  194 (393)
T ss_dssp             TSSEEEEEETT--------SCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEET----
T ss_pred             CCCEEEEEcCC--------CeEEEEECCCCcEEEE--EccCCCCEEEEEEcCCCCEEEEecCC-----CcEEEEEC----
Confidence            56777777643        3477888877643221  1111111 122222 44555666543     35677774    


Q ss_pred             cccccCCeEEccCCCCCCCceeEEEE--CCEEEEEcCCCCC
Q 016413          256 GKALEKAWRTEIPIPRGGPHRACFVF--NDRLFVVGGQEGD  294 (390)
Q Consensus       256 ~~~~~~~W~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~  294 (390)
                         .+.+-.........  ...++..  ++++++.|+.++.
T Consensus       195 ---~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~s~d~~  230 (393)
T 1erj_A          195 ---RTGQCSLTLSIEDG--VTTVAVSPGDGKYIAAGSLDRA  230 (393)
T ss_dssp             ---TTTEEEEEEECSSC--EEEEEECSTTCCEEEEEETTSC
T ss_pred             ---CCCeeEEEEEcCCC--cEEEEEECCCCCEEEEEcCCCc
Confidence               33332221111111  1122222  5678888887653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=81.35  E-value=30  Score=31.04  Aligned_cols=169  Identities=7%  Similarity=-0.025  Sum_probs=77.4

Q ss_pred             eEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCc--
Q 016413          146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSP--  222 (390)
Q Consensus       146 ~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~--  222 (390)
                      .+.++|+.+.+-........    .-.+++. -++++++.++         .+.+.+++..+..-.............  
T Consensus       158 ~i~iwd~~~~~~~~~~~~~~----~V~~v~fspdg~~l~s~s---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (365)
T 4h5i_A          158 IMRIIDPSDLTEKFEIETRG----EVKDLHFSTDGKVVAYIT---------GSSLEVISTVTGSCIARKTDFDKNWSLSK  224 (365)
T ss_dssp             EEEEEETTTTEEEEEEECSS----CCCEEEECTTSSEEEEEC---------SSCEEEEETTTCCEEEEECCCCTTEEEEE
T ss_pred             EEEEeECCCCcEEEEeCCCC----ceEEEEEccCCceEEecc---------ceeEEEEEeccCcceeeeecCCCCCCEEE
Confidence            58889998876543322111    1223333 3566666664         233666777666543322211111111  


Q ss_pred             eEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEc--cCCCCCCCceeEE--EECCEEEEEcCCCCCCCCC
Q 016413          223 ATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE--IPIPRGGPHRACF--VFNDRLFVVGGQEGDFMAK  298 (390)
Q Consensus       223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~--~~~p~~~~~~~~~--~~~~~iyv~GG~~~~~~~~  298 (390)
                      .+..-++..++.++.+... ...+..|++       ........  ..+......-.++  .-++++++.|+.++.    
T Consensus       225 v~fspdg~~l~~~s~d~~~-~~~i~~~~~-------~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~----  292 (365)
T 4h5i_A          225 INFIADDTVLIAASLKKGK-GIVLTKISI-------KSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS----  292 (365)
T ss_dssp             EEEEETTEEEEEEEESSSC-CEEEEEEEE-------ETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC----
T ss_pred             EEEcCCCCEEEEEecCCcc-eeEEeeccc-------ccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE----
Confidence            1223477777777654321 112334443       22222211  1111111111222  236788888887653    


Q ss_pred             CCCCccccccccceecCcEEeeC-CCCCeEECCCC-CCCCCcceeEEEEECCEEEEEcCCCCC
Q 016413          299 PGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPM-PKPNSHIECAWVIVNNSIIITGGTTEK  359 (390)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~-~~~~~~~~~~~~~~~~~l~v~GG~~~~  359 (390)
                                        |.+|| .+.+  .+..+ ..........+...++++++.|+.++.
T Consensus       293 ------------------V~iwd~~~~~--~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t  335 (365)
T 4h5i_A          293 ------------------IALVKLKDLS--MSKIFKQAHSFAITEVTISPDSTYVASVSAANT  335 (365)
T ss_dssp             ------------------EEEEETTTTE--EEEEETTSSSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             ------------------EEEEECCCCc--EEEEecCcccCCEEEEEECCCCCEEEEEeCCCe
Confidence                              88888 5432  22221 111111112122337888888887644

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=80.77  E-value=18  Score=35.87  Aligned_cols=65  Identities=11%  Similarity=0.030  Sum_probs=33.2

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCc--eee-cCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEEC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVD-RFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDS  204 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~-~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~  204 (390)
                      ..+++.|+.++      .+.++|+.+..  +.. ...+... ...-.+++. -++.+.+.|+.+        ..+.+||.
T Consensus       395 ~~~l~s~s~D~------~i~~W~~~~~~~~~~~~~~~~~~h-~~~v~~v~~s~~g~~l~sgs~D--------g~v~vwd~  459 (694)
T 3dm0_A          395 ADIIVSASRDK------SIILWKLTKDDKAYGVAQRRLTGH-SHFVEDVVLSSDGQFALSGSWD--------GELRLWDL  459 (694)
T ss_dssp             CSEEEEEETTS------EEEEEECCCSTTCSCEEEEEEECC-SSCEEEEEECTTSSEEEEEETT--------SEEEEEET
T ss_pred             CCEEEEEeCCC------cEEEEEccCCCcccccccceecCC-CCcEEEEEECCCCCEEEEEeCC--------CcEEEEEC
Confidence            36788888764      47777766532  111 0111110 011122222 356677777643        45778888


Q ss_pred             CCCC
Q 016413          205 ETRK  208 (390)
Q Consensus       205 ~~~~  208 (390)
                      .+..
T Consensus       460 ~~~~  463 (694)
T 3dm0_A          460 AAGV  463 (694)
T ss_dssp             TTTE
T ss_pred             CCCc
Confidence            7654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=80.66  E-value=39  Score=33.76  Aligned_cols=196  Identities=11%  Similarity=0.083  Sum_probs=94.4

Q ss_pred             CeEEEEeCCCCce--eecCCCCCCCCCcceEEE-EeCCEEEEEeceeCCCCCCCCceEEEEECCCC--C-eEeCCCCCCC
Q 016413          145 SHVDVYNFTDNKW--VDRFDMPKDMAHSHLGVV-SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR--K-WDSIPPLPSP  218 (390)
Q Consensus       145 ~~v~~yd~~~~~W--~~~~~l~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~-W~~~~~~p~~  218 (390)
                      .+++++++.+..-  ..+...+.. +....++. .-+++..++...+...   ..++++.+|..+.  . |+.+.+-...
T Consensus       243 ~~v~~~~lgt~~~~~~lv~~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          243 QTVWLHRLGTPQSADQPVFATPEL-PKRGHGASVSSDGRWVVITSSEGTD---PVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTC-TTCEEEEEECTTSCEEEEEEECTTC---SCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CEEEEEECCCCchhCEEEeccCCC-CeEEEEEEECCCCCEEEEEEEccCC---CcceEEEEECCCCCCcccEEecCCCCc
Confidence            4688888876652  122222211 11222333 2355444444333211   2578999998876  6 8877543222


Q ss_pred             CCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeecccccc--CCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCC
Q 016413          219 RYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALE--KAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFM  296 (390)
Q Consensus       219 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~--~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~  296 (390)
                      ... .+...++.||+..-...  ....+..+++       .+  ..|+.+.+-.... -..+...+++|++....++.  
T Consensus       319 ~~~-~~~~dg~~l~~~s~~~~--~~~~l~~~d~-------~~~~~~~~~l~~~~~~~-l~~~~~~~~~lv~~~~~dg~--  385 (741)
T 1yr2_A          319 QWD-FVDGVGDQLWFVSGDGA--PLKKIVRVDL-------SGSTPRFDTVVPESKDN-LESVGIAGNRLFASYIHDAK--  385 (741)
T ss_dssp             CEE-EEEEETTEEEEEECTTC--TTCEEEEEEC-------SSSSCEEEEEECCCSSE-EEEEEEEBTEEEEEEEETTE--
T ss_pred             eEE-EEeccCCEEEEEECCCC--CCCEEEEEeC-------CCCccccEEEecCCCCe-EEEEEEECCEEEEEEEECCE--
Confidence            211 22346777887754321  1223444442       33  4688775432211 12344558888877655432  


Q ss_pred             CCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEE--ECCEEEEEcCCCCCCCcceeeEEeeeEE
Q 016413          297 AKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVI--VNNSIIITGGTTEKHPMTKRMILVGEVF  373 (390)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~v~  373 (390)
                                        ..++.+| ....-..++ +|...  . ...+.  -+++.+++...+..        .-.+++
T Consensus       386 ------------------~~l~~~~~~g~~~~~l~-~~~~~--~-v~~~~~s~d~~~l~~~~ss~~--------~P~~i~  435 (741)
T 1yr2_A          386 ------------------SQVLAFDLDGKPAGAVS-LPGIG--S-ASGLSGRPGDRHAYLSFSSFT--------QPATVL  435 (741)
T ss_dssp             ------------------EEEEEEETTSCEEEECB-CSSSC--E-EEEEECCBTCSCEEEEEEETT--------EEEEEE
T ss_pred             ------------------EEEEEEeCCCCceeecc-CCCCe--E-EEEeecCCCCCEEEEEEcCCC--------CCCEEE
Confidence                              2478887 444333332 22211  1 11111  13332332222222        234799


Q ss_pred             EeecCccceeeccC
Q 016413          374 QFHLDSLVIIYHYR  387 (390)
Q Consensus       374 ~yd~~~~~W~~v~~  387 (390)
                      .||+.+++...+..
T Consensus       436 ~~d~~tg~~~~l~~  449 (741)
T 1yr2_A          436 ALDPATAKTTPWEP  449 (741)
T ss_dssp             EEETTTTEEEECSC
T ss_pred             EEECCCCcEEEEec
Confidence            99998877666543

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=80.50  E-value=23  Score=29.30  Aligned_cols=95  Identities=13%  Similarity=0.168  Sum_probs=49.1

Q ss_pred             ceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceee--c----CCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCC
Q 016413          122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD--R----FDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRG  194 (390)
Q Consensus       122 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~--~----~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~  194 (390)
                      -+++.+++++|+|=|.        .+|+++.....+..  +    +.||.   .-.++... .++++|+|=|        
T Consensus        27 DAi~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~wp~Lp~---~iDAa~~~~~~~~iyfFkG--------   87 (207)
T 1pex_A           27 DAITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPN---RIDAAYEHPSHDLIFIFRG--------   87 (207)
T ss_dssp             SEEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCS---SCCEEEEETTTTEEEEEET--------
T ss_pred             eEEEeCCCcEEEEECC--------EEEEEeCCCcCCCceehhHhccCCCC---CccEEEEeccCCcEEEEcc--------
Confidence            3455679999999653        36777654433211  1    23342   22322222 2689999976        


Q ss_pred             CCceEEEEECCCCCe---EeCCCCCCCC--CCceEEE-E--CCEEEEEccC
Q 016413          195 PTSRTFVLDSETRKW---DSIPPLPSPR--YSPATQL-W--RGRLHVMGGS  237 (390)
Q Consensus       195 ~~~~v~~yd~~~~~W---~~~~~~p~~r--~~~~~~~-~--~~~iyv~GG~  237 (390)
                        +.+|+|+..+..-   +.+..+-.|.  ..--+|. .  ++++|+|-|.
T Consensus        88 --~~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG~  136 (207)
T 1pex_A           88 --RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN  136 (207)
T ss_dssp             --TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT
T ss_pred             --CEEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeCC
Confidence              4567776432211   2333222222  1223333 2  4799999763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	390
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	7e-07
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	7e-06
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	2e-06
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	4e-06

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 48.3 bits (113), Expect = 7e-07
 Identities = 30/268 (11%), Positives = 74/268 (27%), Gaps = 25/268 (9%)

Query: 103 PAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD 162
            + D                +A       +   G  S      + +VY+ +   W    +
Sbjct: 105 SSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPN 164

Query: 163 MPKDMAHS--HLGVVSDGRYIYIVSGQYGP--QCRGPTSRTFVLDSETRKWDSIPPLPSP 218
              +   +    G+     + ++   + G   Q    T+  +   S +    S     S 
Sbjct: 165 AKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSN 224

Query: 219 RYSPA---------TQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPI 269
           R                 +G++   GGS + + +    +  I                  
Sbjct: 225 RGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG 284

Query: 270 PRGGPHR--ACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWK 327
                    +  + +   F+ GGQ      +  +P+F           ++Y+ + +  + 
Sbjct: 285 LYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTP---------EIYVPEQD-TFY 334

Query: 328 VLPPMPKPNSHIECAWVIVNNSIIITGG 355
              P      +   + ++ +  +   GG
Sbjct: 335 KQNPNSIVRVYHSISLLLPDGRVFNGGG 362

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 45.2 bits (105), Expect = 7e-06
 Identities = 28/207 (13%), Positives = 52/207 (25%), Gaps = 21/207 (10%)

Query: 103 PAPDL-EWEQMPSAPVPRLDGAAIQIKNLFYVFAGY-----GSLDYVHSHVDVYNFTDNK 156
           P P L  W      P+     A         +++ Y     G      +    ++ +   
Sbjct: 4   PQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI 63

Query: 157 WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216
             DR            G+          +GQ          +T + DS +  W   P + 
Sbjct: 64  VSDRTVTVTKHDMFCPGIS------MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ 117

Query: 217 SP-RYSPATQLWRGRLHVMGGSKEN--------RHTPGLEHWSIAVKDGKALEKAWRTEI 267
               Y  +  +  GR+  +GGS            ++P  + W+               + 
Sbjct: 118 VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG 177

Query: 268 PIPRGGPHRACFVFNDRLFVVGGQEGD 294
                            +F  G     
Sbjct: 178 LYRSDNHAWLFGWKKGSVFQAGPSTAM 204

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 33/281 (11%), Positives = 59/281 (20%), Gaps = 70/281 (24%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
            W ++    VPR   A   +  L Y   G  +    ++     +  +             
Sbjct: 30  TWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS 89

Query: 168 AHSHLGVVSDGRYIYIVSGQY--------------------------------------- 188
              +   V          G                                         
Sbjct: 90  VPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNR 149

Query: 189 ------GPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRH 242
                 G       +       E  +W  I  + + R      +    ++  GG      
Sbjct: 150 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ 209

Query: 243 TPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSP 302
                  S+   D +     +   +   R        V   R++V+GG +G         
Sbjct: 210 L-----NSVERYDVETETWTFVAPMKHRRSAL--GITVHQGRIYVLGGYDGH-------- 254

Query: 303 IFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECA 342
                         V   D D   W  +  M    S +  A
Sbjct: 255 ---------TFLDSVECYDPDTDTWSEVTRMTSGRSGVGVA 286

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 4e-06
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 4/72 (5%)

Query: 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGS 237
           GR IY   G +    R   S     +     W  +  L  PR   A  +  G L+ +GG 
Sbjct: 4   GRLIYTAGGYF----RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGR 59

Query: 238 KENRHTPGLEHW 249
             +         
Sbjct: 60  NNSPDGNTDSSA 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	390
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	100.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.24
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.03
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	95.71
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.4
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.35
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	95.33
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	94.82
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	93.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	93.04
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	92.98
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	92.91
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	92.85
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	92.84
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	92.82
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	92.47
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	91.99
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	91.65
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	91.59
d1tbga_	340	beta1-subunit of the signal-transducing G protein	91.4
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	91.24
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	91.23
d1tbga_	340	beta1-subunit of the signal-transducing G protein	90.85
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	90.8
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	89.86
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	89.43
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	88.86
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	88.76
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	88.08
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	87.58
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	87.48
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	86.54
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	84.9
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	84.88
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	83.52
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	82.62
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	82.49
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	82.25
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	81.34

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-43  Score=316.50  Aligned_cols=254  Identities=19%  Similarity=0.306  Sum_probs=217.4

Q ss_pred             ccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCC---CCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEE
Q 016413           99 FADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSL---DYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV  175 (390)
Q Consensus        99 ~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~  175 (390)
                      ++.||+.+++|+++++||.+|.+|++++++++|||+||....   ...++++++||+.+++|+.+++||.  +|..|+++
T Consensus        21 ~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~--~r~~~~~~   98 (288)
T d1zgka1          21 LEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV--PRNRIGVG   98 (288)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSS--CCBTCEEE
T ss_pred             EEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccc--eecceecc
Confidence            333444455565666667889999999999999999997432   2346789999999999999999987  68999999


Q ss_pred             EeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeec
Q 016413          176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKD  255 (390)
Q Consensus       176 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~  255 (390)
                      +.+++||++||..+...   .+++++||+.++.|...+.++.+|..|+++.+++++|++||.........++.|+     
T Consensus        99 ~~~~~i~~~gg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d-----  170 (288)
T d1zgka1          99 VIDGHIYAVGGSHGCIH---HNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYY-----  170 (288)
T ss_dssp             EETTEEEEECCEETTEE---CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEE-----
T ss_pred             ccceeeEEecceecccc---cceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEEEee-----
Confidence            99999999999876543   7889999999999999999999999999999999999999987766666667766     


Q ss_pred             cccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCC
Q 016413          256 GKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPK  334 (390)
Q Consensus       256 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~  334 (390)
                        +.+++|...+..+..+..+++++.+++|+++||.+...                 .+.+.+.|| .+++|+.++++|.
T Consensus       171 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~p~  231 (288)
T d1zgka1         171 --PERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQD-----------------QLNSVERYDVETETWTFVAPMKH  231 (288)
T ss_dssp             --TTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSS-----------------BCCCEEEEETTTTEEEECCCCSS
T ss_pred             --ccccccccccccccccccccccceeeeEEEecCccccc-----------------cccceeeeeecceeeecccCccC
Confidence              68999999999888888889999999999999987542                 467899999 8899999999999


Q ss_pred             CCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeeccCCCC
Q 016413          335 PNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYRPPK  390 (390)
Q Consensus       335 ~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~P~  390 (390)
                      +|..+  +++.++++|||+||.+...       .++++++||+++++|+.++.||+
T Consensus       232 ~r~~~--~~~~~~~~l~v~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~p~  278 (288)
T d1zgka1         232 RRSAL--GITVHQGRIYVLGGYDGHT-------FLDSVECYDPDTDTWSEVTRMTS  278 (288)
T ss_dssp             CCBSC--EEEEETTEEEEECCBCSSC-------BCCEEEEEETTTTEEEEEEECSS
T ss_pred             cccce--EEEEECCEEEEEecCCCCe-------ecceEEEEECCCCEEEECCCCCC
Confidence            88765  4578899999999987665       67789999999999999999985

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-38  Score=285.13  Aligned_cols=274  Identities=17%  Similarity=0.283  Sum_probs=238.2

Q ss_pred             hccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCC-----Cch---hHHHhhhccccc
Q 016413           31 IADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKK-----GQD---AERFLSATFADL  102 (390)
Q Consensus        31 ~~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~-----~~~---~~~~~~~~~~~~  102 (390)
                      +++.||++||. +   ...++++++||+++++|.++++|+.+   |..|+++++++.     |..   .......+++.|
T Consensus         3 ~g~~iyv~GG~-~---~~~~~~~~~yd~~t~~W~~~~~~p~~---R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~y   75 (288)
T d1zgka1           3 VGRLIYTAGGY-F---RQSLSYLEAYNPSNGTWLRLADLQVP---RSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCY   75 (288)
T ss_dssp             CCCCEEEECCB-S---SSBCCCEEEEETTTTEEEECCCCSSC---CBSCEEEEETTEEEEECCEEEETTEEEECCCEEEE
T ss_pred             cCCEEEEECCc-C---CCCCceEEEEECCCCeEEECCCCCCc---cceeEEEEECCEEEEEeCcccCCCCccccchhhhc
Confidence            57899999998 3   24688999999999999999999887   999999887765     211   111223489999


Q ss_pred             ccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEE
Q 016413          103 PAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIY  182 (390)
Q Consensus       103 ~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iy  182 (390)
                      |+.+++|++++++|.+|..|++++++++||++||..... .++++++||+.+++|...+.++.  .|..++++..++++|
T Consensus        76 d~~~~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~  152 (288)
T d1zgka1          76 NPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVAPMLT--RRIGVGVAVLNRLLY  152 (288)
T ss_dssp             ETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECCCCSS--CCBSCEEEEETTEEE
T ss_pred             ccccccccccccccceecceeccccceeeEEecceeccc-ccceeeeeccccCcccccccccc--ccccceeeeeeecce
Confidence            999999999999999999999999999999999987544 46889999999999999888876  588999999999999


Q ss_pred             EEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCC
Q 016413          183 IVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKA  262 (390)
Q Consensus       183 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (390)
                      ++||.+...   ...++++||+.+++|...+.++.++..++++..+++|+++||............|+       ..+++
T Consensus       153 ~~GG~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~-------~~~~~  222 (288)
T d1zgka1         153 AVGGFDGTN---RLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYD-------VETET  222 (288)
T ss_dssp             EECCBCSSC---BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE-------TTTTE
T ss_pred             EecCccccc---ccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeee-------eccee
Confidence            999987653   36789999999999999999999999999999999999999998777677777777       58999


Q ss_pred             eEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCccee
Q 016413          263 WRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIEC  341 (390)
Q Consensus       263 W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~  341 (390)
                      |+.++++|.+|..+++++++++|||+||.+..                 ..++++++|| .+++|+.+++||.+|..+++
T Consensus       223 ~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-----------------~~~~~v~~yd~~~~~W~~~~~~p~~R~~~~~  285 (288)
T d1zgka1         223 WTFVAPMKHRRSALGITVHQGRIYVLGGYDGH-----------------TFLDSVECYDPDTDTWSEVTRMTSGRSGVGV  285 (288)
T ss_dssp             EEECCCCSSCCBSCEEEEETTEEEEECCBCSS-----------------CBCCEEEEEETTTTEEEEEEECSSCCBSCEE
T ss_pred             eecccCccCcccceEEEEECCEEEEEecCCCC-----------------eecceEEEEECCCCEEEECCCCCCCcEeEEE
Confidence            99999999999999999999999999998654                 3577899999 78899999999999988754

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=100.00  E-value=1.5e-35  Score=279.36  Aligned_cols=326  Identities=10%  Similarity=0.059  Sum_probs=227.8

Q ss_pred             HHHhhccEEEEecCCCCC---CCccccceeeeeccCCCceEeecCCCCCcccccc--ceEEEecCCCc-hhHHHhhhccc
Q 016413           27 GAALIADFMWASSSSSFS---SSSAHLSVASNWALEKSGVVVIPHVNATKIDRQR--ESVAVIDKKGQ-DAERFLSATFA  100 (390)
Q Consensus        27 ~~~~~~~~l~~~GG~~~~---~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~--~~~~~~~~~~~-~~~~~~~~~~~  100 (390)
                      +++..+++||++||..+.   .....+..++.|||.+++|..++.+..+   |..  ++.+++.+... .....-...++
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~---~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK---HDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS---CCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCC---cccceeEEEEecCCcEEEeecCCCccee
Confidence            445568999999997321   1123455688999999999998887766   444  34444443311 11111123788


Q ss_pred             ccccCCCCeEECCCCCCcCCCceEEEE-CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCc--c------
Q 016413          101 DLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHS--H------  171 (390)
Q Consensus       101 ~~~~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~--~------  171 (390)
                      .||+.+++|+.++.|+.+|..|+++++ +++||++||.......++++++||+.+++|+.++.++.+..+.  .      
T Consensus       102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~  181 (387)
T d1k3ia3         102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  181 (387)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             EecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeec
Confidence            999999999999999999999999887 5799999998877777889999999999999988766532211  1      


Q ss_pred             ----eEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCC-------CCCCCceEEE--ECCEEEEEccCC
Q 016413          172 ----LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP-------SPRYSPATQL--WRGRLHVMGGSK  238 (390)
Q Consensus       172 ----~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p-------~~r~~~~~~~--~~~~iyv~GG~~  238 (390)
                          ......++++|++||.        ...++.||+.+..|.....++       ..+..+++..  .+++||++||..
T Consensus       182 ~~~~~~~~~~~G~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~  253 (387)
T d1k3ia3         182 DNHAWLFGWKKGSVFQAGPS--------TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSP  253 (387)
T ss_dssp             TCSCCEEECGGGCEEECCSS--------SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBS
T ss_pred             cceeEEEEeCCCCEEEecCc--------CCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEecc
Confidence                1112224555555542        567899999999998876433       2333333332  378999999976


Q ss_pred             CCCCC-CCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceecCc
Q 016413          239 ENRHT-PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGD  316 (390)
Q Consensus       239 ~~~~~-~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (390)
                      ..... .........++++++....|+.+.+||.+|..++++++ +++|||+||.......           .....+.+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~-----------~~~~~~~~  322 (387)
T d1k3ia3         254 DYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF-----------EDSTPVFT  322 (387)
T ss_dssp             SSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT-----------CCCSBCCC
T ss_pred             CCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccC-----------CCCcEece
Confidence            43322 22222333455666777889999999999988888887 6799999997643210           11235567


Q ss_pred             EEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecC
Q 016413          317 VYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLD  378 (390)
Q Consensus       317 v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~  378 (390)
                      +++|| .+++|+.+++|+.||..|+++++..+++|||+||........    ...++++|||-
T Consensus       323 ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~~~~~~~~----~~~~~e~y~Pp  381 (387)
T d1k3ia3         323 PEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTT----NHFDAQIFTPN  381 (387)
T ss_dssp             CEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTCSC----CCCEEEEEECG
T ss_pred             EEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCCCcCCCCc----ccceEEEEcch
Confidence            99999 789999999999999988765445599999999964332210    34579999974

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.96  E-value=1.6e-29  Score=237.68  Aligned_cols=261  Identities=13%  Similarity=0.096  Sum_probs=180.0

Q ss_pred             cCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCC-----CCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-e
Q 016413          104 APDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLD-----YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-D  177 (390)
Q Consensus       104 ~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~-----~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~  177 (390)
                      |...+|+...++|..|..++++..+++||||||.....     ..+..+++|||.+++|+.+++++.+..+.+++.++ .
T Consensus         6 p~~g~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~   85 (387)
T d1k3ia3           6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG   85 (387)
T ss_dssp             TTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT
T ss_pred             CCCCccCCcCCCCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec
Confidence            45678999999998888777777799999999985432     23456899999999999988887765555555444 5


Q ss_pred             CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEE-CCEEEEEccCCCC-CCCCCcceEEeeeec
Q 016413          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGGSKEN-RHTPGLEHWSIAVKD  255 (390)
Q Consensus       178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~-~~~~~~~~~~~~~~~  255 (390)
                      +++||++||.+       .+++++||+.+++|+.+++|+.+|..|+++++ +++||++||.... ....+++.|+     
T Consensus        86 ~g~i~v~Gg~~-------~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd-----  153 (387)
T d1k3ia3          86 NGQIVVTGGND-------AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS-----  153 (387)
T ss_dssp             TSCEEEECSSS-------TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE-----
T ss_pred             CCcEEEeecCC-------CcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeec-----
Confidence            88999999854       35689999999999999999999999998877 6799999997442 3345555555     


Q ss_pred             cccccCCeEEccCCC---------------------------------------------------------------CC
Q 016413          256 GKALEKAWRTEIPIP---------------------------------------------------------------RG  272 (390)
Q Consensus       256 ~~~~~~~W~~~~~~p---------------------------------------------------------------~~  272 (390)
                        +.+++|+.++.++                                                               ..
T Consensus       154 --~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (387)
T d1k3ia3         154 --PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDA  231 (387)
T ss_dssp             --TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCC
T ss_pred             --CCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCccc
Confidence              4556665543211                                                               11


Q ss_pred             CCceeEE--EECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECCE
Q 016413          273 GPHRACF--VFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNS  349 (390)
Q Consensus       273 ~~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~  349 (390)
                      +..+++.  ..+++||++||.......         .......+.+++.++ ....|+.++.||.+|..+.+ ++..+++
T Consensus       232 ~~~~~~~~~~~~g~v~v~GG~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~-~~~~dg~  301 (387)
T d1k3ia3         232 MCGNAVMYDAVKGKILTFGGSPDYQDS---------DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTS-VVLPDGS  301 (387)
T ss_dssp             BTCEEEEEETTTTEEEEECCBSSSSSS---------BCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEE-EECTTSC
T ss_pred             ccccEEEeeccCCceEEEEeccCCCCC---------cccceeecccccccccCCCceeecccccccccccee-eeccCCe
Confidence            1111111  136888999986543210         001111122333444 34578889999999887643 3444789


Q ss_pred             EEEEcCCCCCCCcceeeEEeeeEEEeecCccceeeccCCC
Q 016413          350 IIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYRPP  389 (390)
Q Consensus       350 l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~P  389 (390)
                      |||+||........ ....++++++||+++++|+.++.+|
T Consensus       302 i~v~GG~~~~~~~~-~~~~~~~ve~Ydp~~~~W~~~~~~~  340 (387)
T d1k3ia3         302 TFITGGQRRGIPFE-DSTPVFTPEIYVPEQDTFYKQNPNS  340 (387)
T ss_dssp             EEEECCBSBCCTTC-CCSBCCCCEEEEGGGTEEEECCCCS
T ss_pred             EEEECCcccCccCC-CCcEeceEEEEECCCCeEEECCCCC
Confidence            99999976432111 1115668999999999999998887

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.24  E-value=0.025  Score=47.40  Aligned_cols=146  Identities=14%  Similarity=0.127  Sum_probs=70.5

Q ss_pred             cEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCCCch-hHHHhhhcccccccCCCCeEE
Q 016413           33 DFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQD-AERFLSATFADLPAPDLEWEQ  111 (390)
Q Consensus        33 ~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~W~~  111 (390)
                      .++||.+.. ++       ++..+|+++.+....-+....     .+++++-.+.... .....+..+..+|..+.+-. 
T Consensus         2 ~~~yV~~~~-~~-------~v~v~D~~t~~~~~~i~~g~~-----p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~-   67 (301)
T d1l0qa2           2 TFAYIANSE-SD-------NISVIDVTSNKVTATIPVGSN-----PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI-   67 (301)
T ss_dssp             EEEEEEETT-TT-------EEEEEETTTTEEEEEEECSSS-----EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE-
T ss_pred             eEEEEEECC-CC-------EEEEEECCCCeEEEEEECCCC-----ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcee-
Confidence            478888766 44       688899999876553232222     2334433222111 11122346778887665432 


Q ss_pred             CCCCCCcCCCceEEEE-CC-EEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE--eCCEEEEEece
Q 016413          112 MPSAPVPRLDGAAIQI-KN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQ  187 (390)
Q Consensus       112 ~~~~~~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~--~~~~iyv~GG~  187 (390)
                       ..++....-+.++.. ++ .+++.+..+      ..+..+|..+.+-...-....   . ...++.  .+..+++.+..
T Consensus        68 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~dg~~~~~~~~~  136 (301)
T d1l0qa2          68 -ATVPAGSSPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTVKTGK---S-PLGLALSPDGKKLYVTNNG  136 (301)
T ss_dssp             -EEEECSSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECSS---S-EEEEEECTTSSEEEEEETT
T ss_pred             -eeeecccccccccccccccccccccccc------ceeeecccccceeeeeccccc---c-ceEEEeecCCCeeeeeecc
Confidence             222222222233332 33 455544332      347778888776544322221   1 122222  24455555432


Q ss_pred             eCCCCCCCCceEEEEECCCCCeEe
Q 016413          188 YGPQCRGPTSRTFVLDSETRKWDS  211 (390)
Q Consensus       188 ~~~~~~~~~~~v~~yd~~~~~W~~  211 (390)
                              ...+..++..+.....
T Consensus       137 --------~~~~~~~~~~~~~~~~  152 (301)
T d1l0qa2         137 --------DKTVSVINTVTKAVIN  152 (301)
T ss_dssp             --------TTEEEEEETTTTEEEE
T ss_pred             --------ccceeeeeccccceee
Confidence                    3456677777765433

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.03  E-value=0.057  Score=47.30  Aligned_cols=104  Identities=13%  Similarity=0.235  Sum_probs=59.2

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-CCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +++++++|+.+      ..+.+||..++++..+..+..- ...-.+++.. +++.++.||.+        ..+.+||+.+
T Consensus        18 dg~~la~~~~~------~~i~iw~~~~~~~~~~~~l~gH-~~~V~~l~fsp~~~~l~s~s~D--------~~i~vWd~~~   82 (371)
T d1k8kc_          18 DRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEH-NGQVTGVDWAPDSNRIVTCGTD--------RNAYVWTLKG   82 (371)
T ss_dssp             TSSEEEEECSS------SEEEEEEEETTEEEEEEEEECC-SSCEEEEEEETTTTEEEEEETT--------SCEEEEEEET
T ss_pred             CCCEEEEEeCC------CEEEEEECCCCCEEEEEEecCC-CCCEEEEEECCCCCEEEEEECC--------CeEEEEeecc
Confidence            56677777765      2488899999998877655321 1112233332 55666667643        3477888888


Q ss_pred             CCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      ..|+..............+..  +++.++.|+.+     ..+..|++
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d-----~~i~i~~~  124 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS-----RVISICYF  124 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT-----SSEEEEEE
T ss_pred             cccccccccccccccccccccccccccceeeccc-----Ccceeeee
Confidence            888766544333222222222  45556666543     24555654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.71  E-value=0.17  Score=42.16  Aligned_cols=97  Identities=12%  Similarity=0.132  Sum_probs=46.7

Q ss_pred             CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEE-CCEEEEEccCCCCCCCCCcceEEeeeecc
Q 016413          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDG  256 (390)
Q Consensus       178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~  256 (390)
                      ++++++.|+.        ...+..||.++.+...+........-.+++.. ++..++.|+.+     ..+..|++     
T Consensus       147 ~~~~l~~g~~--------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~-----  208 (299)
T d1nr0a2         147 DKQFVAVGGQ--------DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS-----RKVIPYSV-----  208 (299)
T ss_dssp             TSCEEEEEET--------TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETT-----SCEEEEEG-----
T ss_pred             cccccccccc--------cccccccccccccccccccccccccccccccccccccccccccc-----cccccccc-----
Confidence            5667777764        24577888877665444322211111222222 44555666543     34667774     


Q ss_pred             ccccCCeEE-ccCCCCCCCceeEE--EECCEEEEEcCCCCC
Q 016413          257 KALEKAWRT-EIPIPRGGPHRACF--VFNDRLFVVGGQEGD  294 (390)
Q Consensus       257 ~~~~~~W~~-~~~~p~~~~~~~~~--~~~~~iyv~GG~~~~  294 (390)
                        .++.... ...+......-.++  .-++++++.|+.++.
T Consensus       209 --~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~  247 (299)
T d1nr0a2         209 --ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS  247 (299)
T ss_dssp             --GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             --cccccccccccccccccccccccccccccceEEEcCCCE
Confidence              3333222 22222111111222  236778888887653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.52  Score=39.14  Aligned_cols=153  Identities=13%  Similarity=0.159  Sum_probs=75.7

Q ss_pred             EEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeee
Q 016413          175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVK  254 (390)
Q Consensus       175 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  254 (390)
                      ...++..++.|+.+        ..+..||....+-...  .........++..++.+++.|+.+     ..+..|++   
T Consensus       183 ~~~~~~~l~s~~~d--------g~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~s~d-----~~i~iwd~---  244 (342)
T d2ovrb2         183 LQFDGIHVVSGSLD--------TSIRVWDVETGNCIHT--LTGHQSLTSGMELKDNILVSGNAD-----STVKIWDI---  244 (342)
T ss_dssp             EEECSSEEEEEETT--------SCEEEEETTTCCEEEE--ECCCCSCEEEEEEETTEEEEEETT-----SCEEEEET---
T ss_pred             ccCCCCEEEEEeCC--------CeEEEeecccceeeeE--ecccccceeEEecCCCEEEEEcCC-----CEEEEEec---
Confidence            34566666777643        3477888876553222  111112222334445566666653     35677774   


Q ss_pred             ccccccCCe-EEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCe-EECCC
Q 016413          255 DGKALEKAW-RTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW-KVLPP  331 (390)
Q Consensus       255 ~~~~~~~~W-~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W-~~~~~  331 (390)
                          ...+- ..+...........++..++.+++.|+.++.                      |.+|| .+.+- ..+..
T Consensus       245 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~----------------------i~iwd~~tg~~i~~~~~  298 (342)
T d2ovrb2         245 ----KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT----------------------VKLWDLKTGEFIRNLVT  298 (342)
T ss_dssp             ----TTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSE----------------------EEEEETTTCCEEEEEEE
T ss_pred             ----ccccccccccccceeeeceeecccCCCeeEEEcCCCE----------------------EEEEECCCCCEEEEEec
Confidence                22222 2222222222233455667788888887643                      88888 55432 22222


Q ss_pred             CCCCCCccee-EEEE-ECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCc
Q 016413          332 MPKPNSHIEC-AWVI-VNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDS  379 (390)
Q Consensus       332 ~~~~~~~~~~-~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~  379 (390)
                      ...+...... ++.. .++.+++.|+.++....        .++++|...
T Consensus       299 ~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~--------~l~~~Df~~  340 (342)
T d2ovrb2         299 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEET--------KLLVLDFDV  340 (342)
T ss_dssp             CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCC--------EEEEEECCC
T ss_pred             ccCCCCCCCEEEEEECCCCCEEEEEeCCCCCee--------EEEEEeCCC
Confidence            2221111111 1122 35567777777765431        477777654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.35  E-value=0.27  Score=42.68  Aligned_cols=136  Identities=11%  Similarity=0.064  Sum_probs=68.6

Q ss_pred             cccccccCCCCeEECCCCCCcCCC-ceEEEE-CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEE
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLD-GAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV  175 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~-~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~  175 (390)
                      .+..|+...+++..+..+..-... .+++.. +++.++.||.+.      .+.++|+.+++|.....+... .+.-.++.
T Consensus        30 ~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~------~i~vWd~~~~~~~~~~~~~~~-~~~v~~i~  102 (371)
T d1k8kc_          30 EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR------NAYVWTLKGRTWKPTLVILRI-NRAARCVR  102 (371)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTS------CEEEEEEETTEEEEEEECCCC-SSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCC------eEEEEeecccccccccccccc-cccccccc
Confidence            466666666666655433211111 222222 556667777653      478889889999876544332 12223333


Q ss_pred             E-eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          176 S-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       176 ~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      . -+++.++.|+.++      .-.++.++.....+.........+..-..+..  ++++++.|+.+     ..+..|+.
T Consensus       103 ~~p~~~~l~~~s~d~------~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D-----~~v~v~~~  170 (371)
T d1k8kc_         103 WAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD-----FKCRIFSA  170 (371)
T ss_dssp             ECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT-----SCEEEEEC
T ss_pred             cccccccceeecccC------cceeeeeecccccccccccccccccccccccccccccceeccccC-----cEEEEEee
Confidence            3 2555666665332      33466666666555443322222222222222  45666777654     24555554

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.33  E-value=0.32  Score=41.17  Aligned_cols=67  Identities=9%  Similarity=0.032  Sum_probs=35.7

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      ++++++.|+.++      .+.+||..+........++..... -.+++. -+++.++.+|.+.      ...+.+++.++
T Consensus        69 ~g~~latg~~dg------~i~iwd~~~~~~~~~~~~~~~~~~-v~~v~~s~d~~~l~~~~~~~------~~~~~v~~~~~  135 (311)
T d1nr0a1          69 SGYYCASGDVHG------NVRIWDTTQTTHILKTTIPVFSGP-VKDISWDSESKRIAAVGEGR------ERFGHVFLFDT  135 (311)
T ss_dssp             TSSEEEEEETTS------EEEEEESSSTTCCEEEEEECSSSC-EEEEEECTTSCEEEEEECCS------SCSEEEEETTT
T ss_pred             CCCeEeccccCc------eEeeeeeeccccccccccccccCc-cccccccccccccccccccc------ccccccccccc
Confidence            667788888774      488889888765432222221011 122222 3566666666322      22355666655


Q ss_pred             C
Q 016413          207 R  207 (390)
Q Consensus       207 ~  207 (390)
                      .
T Consensus       136 ~  136 (311)
T d1nr0a1         136 G  136 (311)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.82  E-value=0.38  Score=39.45  Aligned_cols=24  Identities=17%  Similarity=0.156  Sum_probs=16.4

Q ss_pred             ccEEEEecCCCCCCCccccceeeeeccCCCce
Q 016413           32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGV   63 (390)
Q Consensus        32 ~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W   63 (390)
                      ++.+++.|+. |+       ++..||..+.+.
T Consensus        28 ~~~~l~s~s~-Dg-------~i~iWd~~~~~~   51 (317)
T d1vyhc1          28 VFSVMVSASE-DA-------TIKVWDYETGDF   51 (317)
T ss_dssp             SSSEEEEEES-SS-------CEEEEETTTCCC
T ss_pred             CCCEEEEEeC-CC-------eEEEEECCCCCE
Confidence            4566777777 66       677888766553

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.97  E-value=1.4  Score=36.52  Aligned_cols=24  Identities=4%  Similarity=-0.075  Sum_probs=17.5

Q ss_pred             ccEEEEecCCCCCCCccccceeeeeccCCCce
Q 016413           32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGV   63 (390)
Q Consensus        32 ~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W   63 (390)
                      ++.+++.|+. |+       .+..||..+.+-
T Consensus        22 ~~~~l~tgs~-Dg-------~i~vWd~~~~~~   45 (355)
T d1nexb2          22 EDNYVITGAD-DK-------MIRVYDSINKKF   45 (355)
T ss_dssp             ETTEEEEEET-TT-------EEEEEETTTTEE
T ss_pred             CCCEEEEEeC-CC-------eEEEEECCCCcE
Confidence            5667777877 77       788898876653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.04  E-value=1.9  Score=35.99  Aligned_cols=102  Identities=12%  Similarity=0.087  Sum_probs=46.2

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe--CCEEEEEeceeCCCCCCCCceEEEEECC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~  205 (390)
                      +++.++.+|.+...    .+.++|..+.+-  +..+... ...-.+++..  +..+++.|+.+        ..+.+||..
T Consensus       113 d~~~l~~~~~~~~~----~~~v~~~~~~~~--~~~l~~h-~~~v~~v~~~~~~~~~l~sgs~d--------~~i~i~d~~  177 (311)
T d1nr0a1         113 ESKRIAAVGEGRER----FGHVFLFDTGTS--NGNLTGQ-ARAMNSVDFKPSRPFRIISGSDD--------NTVAIFEGP  177 (311)
T ss_dssp             TSCEEEEEECCSSC----SEEEEETTTCCB--CBCCCCC-SSCEEEEEECSSSSCEEEEEETT--------SCEEEEETT
T ss_pred             cccccccccccccc----cccccccccccc--ccccccc-ccccccccccccceeeecccccc--------ccccccccc
Confidence            45666666644322    255666665442  2222221 0111223332  34456667643        347788887


Q ss_pred             CCCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413          206 TRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       206 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      +.+-...  .......-..+..  ++.+++.|+.+     ..+..|++
T Consensus       178 ~~~~~~~--~~~~~~~i~~v~~~p~~~~l~~~~~d-----~~v~~~d~  218 (311)
T d1nr0a1         178 PFKFKST--FGEHTKFVHSVRYNPDGSLFASTGGD-----GTIVLYNG  218 (311)
T ss_dssp             TBEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEET
T ss_pred             ccccccc--cccccccccccccCcccccccccccc-----cccccccc
Confidence            6442221  1111122122222  55666666653     34566664

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.98  E-value=0.42  Score=41.10  Aligned_cols=63  Identities=13%  Similarity=0.012  Sum_probs=34.0

Q ss_pred             CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE--eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +..++.|+.+      ..+..+|..+..-........    ....++.  .++.+++.|+.+        ..+..||..+
T Consensus       175 ~~~~~~~~~~------~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d--------~~i~i~~~~~  236 (388)
T d1erja_         175 GDKLVSGSGD------RTVRIWDLRTGQCSLTLSIED----GVTTVAVSPGDGKYIAAGSLD--------RAVRVWDSET  236 (388)
T ss_dssp             SSEEEEEETT------SEEEEEETTTTEEEEEEECSS----CEEEEEECSTTCCEEEEEETT--------SCEEEEETTT
T ss_pred             cccccccccc------eeeeeeecccccccccccccc----ccccccccCCCCCeEEEEcCC--------CeEEEeeccc
Confidence            3455555543      247888887765444322221    1222222  256677777643        3477888877


Q ss_pred             CCe
Q 016413          207 RKW  209 (390)
Q Consensus       207 ~~W  209 (390)
                      ...
T Consensus       237 ~~~  239 (388)
T d1erja_         237 GFL  239 (388)
T ss_dssp             CCE
T ss_pred             Ccc
Confidence            654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.91  E-value=0.64  Score=39.37  Aligned_cols=64  Identities=8%  Similarity=0.078  Sum_probs=33.7

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      ++.+++.++.+.      .+..+|..+++-........   ..-.+++. .++..++.|+.        -..+..||..+
T Consensus       152 ~~~~l~s~~~d~------~i~~~~~~~~~~~~~~~~~~---~~v~~l~~s~~~~~~~~~~~--------d~~v~i~d~~~  214 (337)
T d1gxra_         152 DSKVCFSCCSDG------NIAVWDLHNQTLVRQFQGHT---DGASCIDISNDGTKLWTGGL--------DNTVRSWDLRE  214 (337)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEET--------TSEEEEEETTT
T ss_pred             cccccccccccc------cccccccccccccccccccc---cccccccccccccccccccc--------ccccccccccc
Confidence            455666666542      47888888766433222111   11222332 35556666653        24577788776


Q ss_pred             CC
Q 016413          207 RK  208 (390)
Q Consensus       207 ~~  208 (390)
                      .+
T Consensus       215 ~~  216 (337)
T d1gxra_         215 GR  216 (337)
T ss_dssp             TE
T ss_pred             ce
Confidence            53

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.85  E-value=2.1  Score=35.28  Aligned_cols=184  Identities=10%  Similarity=0.079  Sum_probs=89.5

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  207 (390)
                      ++.+++.|..+.      .+..+|..+.+.........  ..........++..++.|+.+        ..+..||..+.
T Consensus       170 ~~~~~~~~~~d~------~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d--------~~i~i~d~~~~  233 (355)
T d1nexb2         170 HGNIVVSGSYDN------TLIVWDVAQMKCLYILSGHT--DRIYSTIYDHERKRCISASMD--------TTIRIWDLENG  233 (355)
T ss_dssp             ETTEEEEEETTS------CEEEEETTTTEEEEEECCCS--SCEEEEEEETTTTEEEEEETT--------SCEEEEETTTC
T ss_pred             ccceeeeecccc------eeeeeecccccceeeeeccc--cccccccccccceeeeccccc--------ceEEeeecccc
Confidence            445666665553      47888888776544322221  122222233345566666532        34678888775


Q ss_pred             CeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEE
Q 016413          208 KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV  287 (390)
Q Consensus       208 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv  287 (390)
                      .-...  +........++..+++.++.|+.+     ..+..|++       .+.+-..... ........+...++++++
T Consensus       234 ~~~~~--~~~h~~~v~~~~~~~~~l~~~~~d-----g~i~iwd~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~l~  298 (355)
T d1nexb2         234 ELMYT--LQGHTALVGLLRLSDKFLVSAAAD-----GSIRGWDA-------NDYSRKFSYH-HTNLSAITTFYVSDNILV  298 (355)
T ss_dssp             CEEEE--ECCCSSCCCEEEECSSEEEEECTT-----SEEEEEET-------TTCCEEEEEE-CTTCCCCCEEEECSSEEE
T ss_pred             ccccc--cccccccccccccccceeeeeecc-----cccccccc-------cccceecccc-cCCceEEEEEcCCCCEEE
Confidence            53222  111122223455567777777654     34667774       2222111111 111112244556777666


Q ss_pred             EcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceee
Q 016413          288 VGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRM  366 (390)
Q Consensus       288 ~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~  366 (390)
                      .|. ++                      .|.+|| .+.+... ..+....... .++...++.+++.|+.++.-      
T Consensus       299 ~g~-d~----------------------~i~vwd~~tg~~~~-~~~~~~~~~V-~~v~~~~~~~~~~~s~dg~~------  347 (355)
T d1nexb2         299 SGS-EN----------------------QFNIYNLRSGKLVH-ANILKDADQI-WSVNFKGKTLVAAVEKDGQS------  347 (355)
T ss_dssp             EEE-TT----------------------EEEEEETTTCCBCC-SCTTTTCSEE-EEEEEETTEEEEEEESSSCE------
T ss_pred             EEe-CC----------------------EEEEEECCCCCEEE-EEecCCCCCE-EEEEEcCCeEEEEEECCCcE------
Confidence            553 32                      378888 6554221 1122222222 23344567776677766553      


Q ss_pred             EEeeeEEEeec
Q 016413          367 ILVGEVFQFHL  377 (390)
Q Consensus       367 ~~~~~v~~yd~  377 (390)
                          -+|.+|.
T Consensus       348 ----~l~~~df  354 (355)
T d1nexb2         348 ----FLEILDF  354 (355)
T ss_dssp             ----EEEEEEC
T ss_pred             ----EEEEEeC
Confidence                2677774

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=92.84  E-value=1.9  Score=36.29  Aligned_cols=233  Identities=9%  Similarity=0.045  Sum_probs=102.8

Q ss_pred             ccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCCC-chhHHHhhhcccccccCCCCeE
Q 016413           32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKG-QDAERFLSATFADLPAPDLEWE  110 (390)
Q Consensus        32 ~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~W~  110 (390)
                      ++.||+..... ......-+.+.++|+.+..+..+.........-...++++-.+.+ .-..+. ...+..+++......
T Consensus        28 dG~ly~~~~~~-~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~-~~~i~~~~~~g~~~~  105 (314)
T d1pjxa_          28 NGDFYIVAPEV-EVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTDGTFEE  105 (314)
T ss_dssp             TSCEEEEETTC-EETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETTSCEEE
T ss_pred             CCCEEEEECcc-ccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC-CCeEEEEeCCCcEEE
Confidence            56677765431 111222346899999998876654322111111123333332221 111111 124666676655433


Q ss_pred             ECCCCCCcCC--C-ceEE-EECCEEEEEe--cCCC-------CCCCCCeEEEEeCCCCceeec-CCCCCCCCCcceEEEE
Q 016413          111 QMPSAPVPRL--D-GAAI-QIKNLFYVFA--GYGS-------LDYVHSHVDVYNFTDNKWVDR-FDMPKDMAHSHLGVVS  176 (390)
Q Consensus       111 ~~~~~~~~R~--~-~~~~-~~~~~lyv~G--G~~~-------~~~~~~~v~~yd~~~~~W~~~-~~l~~~~~r~~~~~~~  176 (390)
                      .+......+.  . ..++ --++.||+.-  +...       .......++++++..+ ...+ ..+..|   .+-+...
T Consensus       106 ~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~-~~~~~~~~~~p---NGi~~~~  181 (314)
T d1pjxa_         106 IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQVDTAFQFP---NGIAVRH  181 (314)
T ss_dssp             CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC-EEEEEEEESSE---EEEEEEE
T ss_pred             EEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCc-eeEeeCCccee---eeeEECC
Confidence            3322222221  1 2222 2257899862  2111       1112346888988653 4433 233322   1112222


Q ss_pred             eCC----EEEEEeceeCCCCCCCCceEEEEECCCCC---eEe-CCCCCCCCC-Cc-eEEE-ECCEEEEEccCCCCCCCCC
Q 016413          177 DGR----YIYIVSGQYGPQCRGPTSRTFVLDSETRK---WDS-IPPLPSPRY-SP-ATQL-WRGRLHVMGGSKENRHTPG  245 (390)
Q Consensus       177 ~~~----~iyv~GG~~~~~~~~~~~~v~~yd~~~~~---W~~-~~~~p~~r~-~~-~~~~-~~~~iyv~GG~~~~~~~~~  245 (390)
                      .++    .||+.--        ....+++||...+.   +.+ ...++.... .. .+++ .++.|||..-.     ...
T Consensus       182 d~d~~~~~lyv~d~--------~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~-----~g~  248 (314)
T d1pjxa_         182 MNDGRPYQLIVAET--------PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----SSH  248 (314)
T ss_dssp             CTTSCEEEEEEEET--------TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----TTE
T ss_pred             CCCcceeEEEEEee--------cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC-----CCE
Confidence            222    5777642        25778888764432   221 112222111 11 2222 36789987421     123


Q ss_pred             cceEEeeeeccccccCCeEEccCCCCCCCceeEEEEC---CEEEEEcCCC
Q 016413          246 LEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFN---DRLFVVGGQE  292 (390)
Q Consensus       246 ~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~---~~iyv~GG~~  292 (390)
                      +.+|+       |...+-...-.+|..+  .+.+.++   +.|||....+
T Consensus       249 I~~~d-------p~~g~~~~~i~~p~~~--~t~~afg~d~~~lyVt~~~~  289 (314)
T d1pjxa_         249 IEVFG-------PDGGQPKMRIRCPFEK--PSNLHFKPQTKTIFVTEHEN  289 (314)
T ss_dssp             EEEEC-------TTCBSCSEEEECSSSC--EEEEEECTTSSEEEEEETTT
T ss_pred             EEEEe-------CCCCEEEEEEECCCCC--EEEEEEeCCCCEEEEEECCC
Confidence            45554       5655543333344333  2444443   2588876543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=92.82  E-value=0.22  Score=41.99  Aligned_cols=26  Identities=4%  Similarity=-0.180  Sum_probs=18.9

Q ss_pred             hccEEEEecCCCCCCCccccceeeeeccCCCceE
Q 016413           31 IADFMWASSSSSFSSSSAHLSVASNWALEKSGVV   64 (390)
Q Consensus        31 ~~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~   64 (390)
                      -++..+++++. ++       .+..||+.+.+=.
T Consensus         6 ~~~~~l~~~~~-~~-------~v~v~D~~t~~~~   31 (346)
T d1jmxb_           6 AGHEYMIVTNY-PN-------NLHVVDVASDTVY   31 (346)
T ss_dssp             TTCEEEEEEET-TT-------EEEEEETTTTEEE
T ss_pred             CCCcEEEEEcC-CC-------EEEEEECCCCCEE
Confidence            35667777777 55       7899999888643

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.46  Score=40.35  Aligned_cols=66  Identities=6%  Similarity=0.102  Sum_probs=35.8

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      ++..++.|+.++      .+.+||+...+......+..... .....+. -++.+++.++.        ...+..+|..+
T Consensus       108 dg~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~--------d~~i~~~~~~~  172 (337)
T d1gxra_         108 DGCTLIVGGEAS------TLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCS--------DGNIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESSS------EEEEEECCCC--EEEEEEECSSS-CEEEEEECTTSSEEEEEET--------TSCEEEEETTT
T ss_pred             CCCEEEEeeccc------ccccccccccccccccccccccc-ccccccccccccccccccc--------ccccccccccc
Confidence            566777787763      48889988776655444332111 1222223 24556666543        23477788776


Q ss_pred             CC
Q 016413          207 RK  208 (390)
Q Consensus       207 ~~  208 (390)
                      .+
T Consensus       173 ~~  174 (337)
T d1gxra_         173 QT  174 (337)
T ss_dssp             TE
T ss_pred             cc
Confidence            54

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.99  E-value=1.7  Score=36.31  Aligned_cols=88  Identities=14%  Similarity=0.070  Sum_probs=51.9

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  207 (390)
                      ++.||.+=-      ....++++|+.+++-+.. .+|.   +....+...++.+++..          .+.+.+||+++.
T Consensus        29 ~~~l~wvDi------~~~~I~r~d~~~g~~~~~-~~~~---~~~~i~~~~dg~l~va~----------~~gl~~~d~~tg   88 (295)
T d2ghsa1          29 SGTAWWFNI------LERELHELHLASGRKTVH-ALPF---MGSALAKISDSKQLIAS----------DDGLFLRDTATG   88 (295)
T ss_dssp             TTEEEEEEG------GGTEEEEEETTTTEEEEE-ECSS---CEEEEEEEETTEEEEEE----------TTEEEEEETTTC
T ss_pred             CCEEEEEEC------CCCEEEEEECCCCeEEEE-ECCC---CcEEEEEecCCCEEEEE----------eCccEEeecccc
Confidence            456776511      235699999999875433 3333   22333334677777753          245889999999


Q ss_pred             CeEeCCCCCCC----CCCceEEEECCEEEEEc
Q 016413          208 KWDSIPPLPSP----RYSPATQLWRGRLHVMG  235 (390)
Q Consensus       208 ~W~~~~~~p~~----r~~~~~~~~~~~iyv~G  235 (390)
                      +.+.+......    |.....+--+++||+-.
T Consensus        89 ~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~  120 (295)
T d2ghsa1          89 VLTLHAELESDLPGNRSNDGRMHPSGALWIGT  120 (295)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEECTTSCEEEEE
T ss_pred             eeeEEeeeecCCCcccceeeEECCCCCEEEEe
Confidence            99887654322    22222233367777754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.65  E-value=2.9  Score=34.21  Aligned_cols=122  Identities=12%  Similarity=0.036  Sum_probs=63.3

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEE-ECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQ-IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS  176 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~  176 (390)
                      .+..++.....+........ .....+++ -++.+|+....      ...+.+||+..+.-..+..... . .....+++
T Consensus        94 ~i~~~~~~g~~~~~~~~~~~-~~p~~~avd~~G~i~v~~~~------~~~~~~~~~~g~~~~~~g~~~~-~-~~~~~i~~  164 (279)
T d1q7fa_          94 QIQIYNQYGQFVRKFGATIL-QHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKH-L-EFPNGVVV  164 (279)
T ss_dssp             EEEEECTTSCEEEEECTTTC-SCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTT-C-SSEEEEEE
T ss_pred             ccccccccccceeecCCCcc-cccceeccccCCcEEEEeec------cceeeEeccCCceeeccccccc-c-cccceeee
Confidence            45556665554444422111 11122222 24678887543      2458889987765444322211 1 22333333


Q ss_pred             -eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEE-ECCEEEEEcc
Q 016413          177 -DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQL-WRGRLHVMGG  236 (390)
Q Consensus       177 -~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG  236 (390)
                       .++.||+....        ...+++||+..+....+........-..+++ -++.|||...
T Consensus       165 d~~g~i~v~d~~--------~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~  218 (279)
T d1q7fa_         165 NDKQEIFISDNR--------AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADN  218 (279)
T ss_dssp             CSSSEEEEEEGG--------GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC
T ss_pred             ccceeEEeeecc--------ccceeeeecCCceeeeecccccccCCcccccccCCeEEEEEC
Confidence             46789998643        4678999998776666542111111123333 3667999854

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.59  E-value=3  Score=34.16  Aligned_cols=164  Identities=7%  Similarity=0.056  Sum_probs=81.3

Q ss_pred             CeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCce
Q 016413          145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPA  223 (390)
Q Consensus       145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~  223 (390)
                      ..+..+++....+..+..-..   .....+++ .++.+|+....        ...+.+|++....-..+...........
T Consensus        93 ~~i~~~~~~g~~~~~~~~~~~---~~p~~~avd~~G~i~v~~~~--------~~~~~~~~~~g~~~~~~g~~~~~~~~~~  161 (279)
T d1q7fa_          93 HQIQIYNQYGQFVRKFGATIL---QHPRGVTVDNKGRIIVVECK--------VMRVIIFDQNGNVLHKFGCSKHLEFPNG  161 (279)
T ss_dssp             CEEEEECTTSCEEEEECTTTC---SCEEEEEECTTSCEEEEETT--------TTEEEEECTTSCEEEEEECTTTCSSEEE
T ss_pred             cccccccccccceeecCCCcc---cccceeccccCCcEEEEeec--------cceeeEeccCCceeecccccccccccce
Confidence            358888888777766533221   22233443 45778887531        4567888887654444322222222223


Q ss_pred             EEE-ECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEE-ECCEEEEEcCCCCCCCCCCCC
Q 016413          224 TQL-WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFV-FNDRLFVVGGQEGDFMAKPGS  301 (390)
Q Consensus       224 ~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~  301 (390)
                      +++ -++.||+.....     ..+..|+       +......++..........++++ -++.|||....+..       
T Consensus       162 i~~d~~g~i~v~d~~~-----~~V~~~d-------~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~-------  222 (279)
T d1q7fa_         162 VVVNDKQEIFISDNRA-----HCVKVFN-------YEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNF-------  222 (279)
T ss_dssp             EEECSSSEEEEEEGGG-----TEEEEEE-------TTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSC-------
T ss_pred             eeeccceeEEeeeccc-----cceeeee-------cCCceeeeecccccccCCcccccccCCeEEEEECCCCc-------
Confidence            332 256899886542     2344554       33333333432222222223333 36779998554322       


Q ss_pred             CccccccccceecCcEEeeCCCCCeE--ECCCCCCCCCcceeEEEEECCEEEEEc
Q 016413          302 PIFKCSRRHEVVYGDVYMLDDEMKWK--VLPPMPKPNSHIECAWVIVNNSIIITG  354 (390)
Q Consensus       302 ~~~~~~~~~~~~~~~v~~yd~~~~W~--~~~~~~~~~~~~~~~~~~~~~~l~v~G  354 (390)
                                    .|.+|+++.++.  .......+.. .+. ++..+|.|||..
T Consensus       223 --------------~v~~f~~~G~~~~~~~~~~~~~~p-~~v-av~~dG~l~V~~  261 (279)
T d1q7fa_         223 --------------NLTIFTQDGQLISALESKVKHAQC-FDV-ALMDDGSVVLAS  261 (279)
T ss_dssp             --------------EEEEECTTSCEEEEEEESSCCSCE-EEE-EEETTTEEEEEE
T ss_pred             --------------EEEEECCCCCEEEEEeCCCCCCCE-eEE-EEeCCCcEEEEe
Confidence                          288888544322  1112211111 122 245578998864

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.40  E-value=3.1  Score=34.05  Aligned_cols=26  Identities=15%  Similarity=0.055  Sum_probs=18.5

Q ss_pred             ccEEEEecCCCCCCCccccceeeeeccCCCceEe
Q 016413           32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVV   65 (390)
Q Consensus        32 ~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~   65 (390)
                      ++.+++.||. ++       .+..||..+.....
T Consensus        66 ~~~~l~sgs~-Dg-------~v~iWd~~~~~~~~   91 (340)
T d1tbga_          66 DSRLLVSASQ-DG-------KLIIWDSYTTNKVH   91 (340)
T ss_dssp             TSSEEEEEET-TT-------EEEEEETTTTEEEE
T ss_pred             CCCEEEEEEC-CC-------ceeeeecccceeEE
Confidence            5667777877 77       78888887766543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=91.24  E-value=3  Score=35.04  Aligned_cols=99  Identities=10%  Similarity=0.071  Sum_probs=53.2

Q ss_pred             CCEEEEEecCCCC-CCCCCeEEEEeCCCCceeecCCCCCC-CCCcceEEEEe--CCEEEEEeceeCCCCCCCCceEEEEE
Q 016413          128 KNLFYVFAGYGSL-DYVHSHVDVYNFTDNKWVDRFDMPKD-MAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLD  203 (390)
Q Consensus       128 ~~~lyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~~l~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd  203 (390)
                      ++.||+.-..... ......+.++|+.++.+......... ....-.++++.  ++.+|+..+         ...+.++|
T Consensus        28 dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~---------~~~i~~~~   98 (314)
T d1pjxa_          28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM---------RLGLLVVQ   98 (314)
T ss_dssp             TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---------TTEEEEEE
T ss_pred             CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC---------CCeEEEEe
Confidence            5789987543211 11235699999999988765322110 00112234443  457888654         24588899


Q ss_pred             CCCCCeEeCCCCCCCCC---CceEE-EECCEEEEEc
Q 016413          204 SETRKWDSIPPLPSPRY---SPATQ-LWRGRLHVMG  235 (390)
Q Consensus       204 ~~~~~W~~~~~~p~~r~---~~~~~-~~~~~iyv~G  235 (390)
                      +.....+.+.....++.   -..++ --++.||+..
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd  134 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA  134 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEE
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCCEEEec
Confidence            98765554433222221   12233 3357898863

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.23  E-value=2.1  Score=33.36  Aligned_cols=136  Identities=13%  Similarity=0.089  Sum_probs=66.5

Q ss_pred             eEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceee--c----CCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCC
Q 016413          123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD--R----FDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGP  195 (390)
Q Consensus       123 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~--~----~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~  195 (390)
                      +++.+++.+|+|-|.-        +|+++........  +    +.+|.+.   ..+... .++++|+|-|         
T Consensus        16 Av~~~~G~~y~Fkg~~--------~wr~~~~~~~~~p~~i~~~w~glp~~I---DAAf~~~~~~~~yfFkG---------   75 (195)
T d1su3a2          16 AITTIRGEVMFFKDRF--------YMRTNPFYPEVELNFISVFWPQLPNGL---EAAYEFADRDEVRFFKG---------   75 (195)
T ss_dssp             EEEEETTEEEEEETTE--------EEECCTTSSSCEEEEGGGTCTTSCSSC---CEEEEEGGGTEEEEEET---------
T ss_pred             EEEEcCCeEEEEeCCE--------EEEeeCCCCccCccchHhhCcCCCCcc---cceEEecCCcEEEEECC---------
Confidence            6677899999997742        3444433332211  1    2233321   222222 3689999976         


Q ss_pred             CceEEEEECCCCCe---EeCC---CCCCCCCCceEE-EE--CCEEEEEccCCCCCCCCCcceEEee---eecc--ccccC
Q 016413          196 TSRTFVLDSETRKW---DSIP---PLPSPRYSPATQ-LW--RGRLHVMGGSKENRHTPGLEHWSIA---VKDG--KALEK  261 (390)
Q Consensus       196 ~~~v~~yd~~~~~W---~~~~---~~p~~r~~~~~~-~~--~~~iyv~GG~~~~~~~~~~~~~~~~---~~~~--~~~~~  261 (390)
                       +..++|+..+...   ..+.   .+|.....-.++ ..  ++++|+|-|..       ..+|+..   +...  .+.+.
T Consensus        76 -~~y~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG~~-------y~ry~~~~~~vd~gyPk~I~~  147 (195)
T d1su3a2          76 -NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANK-------YWRYDEYKRSMDPGYPKMIAH  147 (195)
T ss_dssp             -TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETTE-------EEEEETTTTEECSSCSEEHHH
T ss_pred             -cEEEEEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeCCE-------EEEEeccCccccCCccccccc
Confidence             5578887543221   1111   123222222233 32  57999997743       2222210   0000  00122


Q ss_pred             CeEEccCCCCCCCceeEEEECCEEEEEcCC
Q 016413          262 AWRTEIPIPRGGPHRACFVFNDRLFVVGGQ  291 (390)
Q Consensus       262 ~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~  291 (390)
                      .|.   .+|..--  ++...++++|++-|.
T Consensus       148 ~w~---Gvp~~iD--AAf~~~g~~YfFkg~  172 (195)
T d1su3a2         148 DFP---GIGHKVD--AVFMKDGFFYFFHGT  172 (195)
T ss_dssp             HST---TSCSCCS--EEEEETTEEEEEETT
T ss_pred             ccC---CCCCCcc--EEEEECCeEEEEECC
Confidence            343   2343332  556779999999884

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.85  E-value=1.9  Score=35.57  Aligned_cols=13  Identities=23%  Similarity=0.544  Sum_probs=8.7

Q ss_pred             CCEEEEEcCCCCC
Q 016413          282 NDRLFVVGGQEGD  294 (390)
Q Consensus       282 ~~~iyv~GG~~~~  294 (390)
                      ++++++.|+.++.
T Consensus       237 ~~~~l~s~s~d~~  249 (340)
T d1tbga_         237 NGNAFATGSDDAT  249 (340)
T ss_dssp             TSSEEEEEETTSC
T ss_pred             CCCEEEEEeCCCe
Confidence            5667778876643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.80  E-value=3.5  Score=33.57  Aligned_cols=172  Identities=14%  Similarity=0.125  Sum_probs=85.3

Q ss_pred             eEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEE
Q 016413          146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ  225 (390)
Q Consensus       146 ~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~  225 (390)
                      .+..++..+.+.........    ............++.|+.+        ..+..+|+....-..  .+..........
T Consensus       118 ~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d--------~~i~~~d~~~~~~~~--~~~~~~~~~~~~  183 (342)
T d2ovrb2         118 TLRVWDIETGQCLHVLMGHV----AAVRCVQYDGRRVVSGAYD--------FMVKVWDPETETCLH--TLQGHTNRVYSL  183 (342)
T ss_dssp             EEEEEESSSCCEEEEEECCS----SCEEEEEECSSCEEEEETT--------SCEEEEEGGGTEEEE--EECCCSSCEEEE
T ss_pred             eEEEeecccccceeeeeccc----ccceeeccccceeeeecCC--------CeEEEeecccceeeE--EEcCcccccccc
Confidence            47778887776554322221    1223334445556666533        335667765543211  111112223344


Q ss_pred             EECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccc
Q 016413          226 LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFK  305 (390)
Q Consensus       226 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  305 (390)
                      ..++..++.|+.+     ..+..|++       ...+-  +...........++..++.+++.|+.++.           
T Consensus       184 ~~~~~~l~s~~~d-----g~i~~~d~-------~~~~~--~~~~~~~~~~v~~~~~~~~~l~s~s~d~~-----------  238 (342)
T d2ovrb2         184 QFDGIHVVSGSLD-----TSIRVWDV-------ETGNC--IHTLTGHQSLTSGMELKDNILVSGNADST-----------  238 (342)
T ss_dssp             EECSSEEEEEETT-----SCEEEEET-------TTCCE--EEEECCCCSCEEEEEEETTEEEEEETTSC-----------
T ss_pred             cCCCCEEEEEeCC-----CeEEEeec-------cccee--eeEecccccceeEEecCCCEEEEEcCCCE-----------
Confidence            5567777777654     34666764       22221  11111111112344555667777876643           


Q ss_pred             cccccceecCcEEeeC-CCC-CeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccc
Q 016413          306 CSRRHEVVYGDVYMLD-DEM-KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLV  381 (390)
Q Consensus       306 ~~~~~~~~~~~v~~yd-~~~-~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~  381 (390)
                                 +.+|| ... ....+........  ....+..++.+++.|+.++.            |.+||+++.+
T Consensus       239 -----------i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~s~Dg~------------i~iwd~~tg~  291 (342)
T d2ovrb2         239 -----------VKIWDIKTGQCLQTLQGPNKHQS--AVTCLQFNKNFVITSSDDGT------------VKLWDLKTGE  291 (342)
T ss_dssp             -----------EEEEETTTCCEEEEECSTTSCSS--CEEEEEECSSEEEEEETTSE------------EEEEETTTCC
T ss_pred             -----------EEEEecccccccccccccceeee--ceeecccCCCeeEEEcCCCE------------EEEEECCCCC
Confidence                       77887 443 3333332222222  22335667778888876533            6777776654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.86  E-value=1.2  Score=37.33  Aligned_cols=80  Identities=9%  Similarity=0.025  Sum_probs=45.3

Q ss_pred             hhcccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCC--CCcceE
Q 016413           96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM--AHSHLG  173 (390)
Q Consensus        96 ~~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~--~r~~~~  173 (390)
                      ...++++|+.+.+-+.. .+|. +....+..-++.++|...        +.+..||+.+.+.+.+.......  .|..-.
T Consensus        39 ~~~I~r~d~~~g~~~~~-~~~~-~~~~i~~~~dg~l~va~~--------~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~  108 (295)
T d2ghsa1          39 ERELHELHLASGRKTVH-ALPF-MGSALAKISDSKQLIASD--------DGLFLRDTATGVLTLHAELESDLPGNRSNDG  108 (295)
T ss_dssp             GTEEEEEETTTTEEEEE-ECSS-CEEEEEEEETTEEEEEET--------TEEEEEETTTCCEEEEECSSTTCTTEEEEEE
T ss_pred             CCEEEEEECCCCeEEEE-ECCC-CcEEEEEecCCCEEEEEe--------CccEEeecccceeeEEeeeecCCCcccceee
Confidence            34677888777643322 1222 112222334677877531        24899999999998876544322  234444


Q ss_pred             EEEeCCEEEEEe
Q 016413          174 VVSDGRYIYIVS  185 (390)
Q Consensus       174 ~~~~~~~iyv~G  185 (390)
                      .+.-+|.||+.-
T Consensus       109 ~vd~~G~iw~~~  120 (295)
T d2ghsa1         109 RMHPSGALWIGT  120 (295)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EECCCCCEEEEe
Confidence            444577787754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.43  E-value=1  Score=36.92  Aligned_cols=140  Identities=13%  Similarity=-0.033  Sum_probs=61.9

Q ss_pred             ccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccCCCCeEE
Q 016413           32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQ  111 (390)
Q Consensus        32 ~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~  111 (390)
                      ++.+++.|+. ++       .+..||..+.+...+..+...   ..-.+++.......-.....+..+..+|..+.....
T Consensus       147 ~~~~l~~g~~-dg-------~i~~~d~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  215 (299)
T d1nr0a2         147 DKQFVAVGGQ-DS-------KVHVYKLSGASVSEVKTIVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA  215 (299)
T ss_dssp             TSCEEEEEET-TS-------EEEEEEEETTEEEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES
T ss_pred             cccccccccc-cc-------ccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccc
Confidence            4556667766 55       677788776665444332111   111122221111110000112246666665544322


Q ss_pred             C-CCCCCcCCCceEEEE--CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEecee
Q 016413          112 M-PSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQY  188 (390)
Q Consensus       112 ~-~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~  188 (390)
                      . ..+......-..+.+  ++++++.|+.++      .+.+||+.+.+...+..........-.+++..++..++.||.+
T Consensus       216 ~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D  289 (299)
T d1nr0a2         216 HTNSWTFHTAKVACVSWSPDNVRLATGSLDN------SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD  289 (299)
T ss_dssp             CCCCCCCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETT
T ss_pred             ccccccccccccccccccccccceEEEcCCC------EEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCC
Confidence            2 222211111122222  567888888764      3888998876544322111110111222333445556667644

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.86  E-value=0.56  Score=36.95  Aligned_cols=25  Identities=12%  Similarity=0.181  Sum_probs=18.1

Q ss_pred             EEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccc
Q 016413          343 WVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLV  381 (390)
Q Consensus       343 ~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~  381 (390)
                      +...+|++|+|=|.              ..++||+.+++
T Consensus       159 Af~~~g~~YfFkg~--------------~y~r~~~~~~~  183 (195)
T d1su3a2         159 VFMKDGFFYFFHGT--------------RQYKFDPKTKR  183 (195)
T ss_dssp             EEEETTEEEEEETT--------------EEEEEETTTTE
T ss_pred             EEEECCeEEEEECC--------------EEEEEeCCcCE
Confidence            35679999999774              47778776543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.76  E-value=4.5  Score=31.90  Aligned_cols=70  Identities=9%  Similarity=0.013  Sum_probs=41.9

Q ss_pred             EEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEEC
Q 016413          125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDS  204 (390)
Q Consensus       125 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~  204 (390)
                      +..+++.++.|+.|+      .|.++|..+.+-..  .+..  .......+..++++++.|+.++        .+..++.
T Consensus        21 ~~~d~~~l~sgs~Dg------~i~vWd~~~~~~~~--~l~~--H~~~V~~v~~~~~~l~s~s~D~--------~i~~~~~   82 (293)
T d1p22a2          21 LQYDDQKIVSGLRDN------TIKIWDKNTLECKR--ILTG--HTGSVLCLQYDERVIITGSSDS--------TVRVWDV   82 (293)
T ss_dssp             EECCSSEEEEEESSS------CEEEEESSSCCEEE--EECC--CSSCEEEEECCSSEEEEEETTS--------CEEEEES
T ss_pred             EEEcCCEEEEEeCCC------eEEEEECCCCcEEE--EEec--CCCCEeeeecccceeecccccc--------ccccccc
Confidence            445778888898874      37788887665332  2322  1122223345777777777543        3667887


Q ss_pred             CCCCeEeC
Q 016413          205 ETRKWDSI  212 (390)
Q Consensus       205 ~~~~W~~~  212 (390)
                      ........
T Consensus        83 ~~~~~~~~   90 (293)
T d1p22a2          83 NTGEMLNT   90 (293)
T ss_dssp             SSCCEEEE
T ss_pred             cccccccc
Confidence            77665443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.08  E-value=1.5  Score=37.22  Aligned_cols=100  Identities=8%  Similarity=0.105  Sum_probs=49.3

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      ++++++.|+.++      .+..+|..+.+......-..   ..-.++.. .++...+.|+.        ...+..+|..+
T Consensus       132 ~~~~l~s~~~dg------~v~i~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~--------~~~i~~~d~~~  194 (388)
T d1erja_         132 DGKFLATGAEDR------LIRIWDIENRKIVMILQGHE---QDIYSLDYFPSGDKLVSGSG--------DRTVRIWDLRT  194 (388)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEET--------TSEEEEEETTT
T ss_pred             CCCcceeccccc------cccccccccccccccccccc---cccccccccccccccccccc--------ceeeeeeeccc
Confidence            566778888764      37888888777654322111   11112222 24445555542        34577788776


Q ss_pred             CCeEeCCCCCCCCCCceEEE--ECCEEEEEccCCCCCCCCCcceEEe
Q 016413          207 RKWDSIPPLPSPRYSPATQL--WRGRLHVMGGSKENRHTPGLEHWSI  251 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~  251 (390)
                      ..-.........  ...++.  .++.+++.|+.++     .+..|+.
T Consensus       195 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~-----~i~i~~~  234 (388)
T d1erja_         195 GQCSLTLSIEDG--VTTVAVSPGDGKYIAAGSLDR-----AVRVWDS  234 (388)
T ss_dssp             TEEEEEEECSSC--EEEEEECSTTCCEEEEEETTS-----CEEEEET
T ss_pred             cccccccccccc--cccccccCCCCCeEEEEcCCC-----eEEEeec
Confidence            543332221111  111221  2456667766542     3555553

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.58  E-value=2.1  Score=33.25  Aligned_cols=53  Identities=15%  Similarity=0.141  Sum_probs=29.7

Q ss_pred             EEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeC------CCCCCCCCCceEEEE--CCEEEEEccC
Q 016413          173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI------PPLPSPRYSPATQLW--RGRLHVMGGS  237 (390)
Q Consensus       173 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~------~~~p~~r~~~~~~~~--~~~iyv~GG~  237 (390)
                      +++.++|++|+|=|          ..+|+++.....+...      +.+|....  ++...  ++.+|+|-|.
T Consensus        13 Av~~~~g~~y~Fkg----------~~~wr~~~~~~~~~p~~i~~~w~~lp~~ID--AAf~~~~~~~~yffkg~   73 (192)
T d1pexa_          13 AITSLRGETMIFKD----------RFFWRLHPQQVDAELFLTKSFWPELPNRID--AAYEHPSHDLIFIFRGR   73 (192)
T ss_dssp             EEEEETTEEEEEET----------TEEEEECSSSSCCEEEEHHHHCTTSCSSCC--EEEEETTTTEEEEEETT
T ss_pred             EEEEcCCeEEEEEC----------CEEEEEcCCCCCCcccchhhhCcCCCCccc--ceEEEcCCCEEEEEcCC
Confidence            56678999999965          3356665544433321      13443221  22332  6778887664

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=87.48  E-value=1.5  Score=35.50  Aligned_cols=61  Identities=18%  Similarity=0.391  Sum_probs=39.2

Q ss_pred             EEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe--CCEEEEEeceeCCCCCCCCceEEEEECCCC
Q 016413          130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (390)
Q Consensus       130 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  207 (390)
                      ++||.+..+      +.|.++|+.+.+....-++..   + -+++++.  +.+||+.+..        ...+.+||.++.
T Consensus         3 ~~yV~~~~~------~~v~v~D~~t~~~~~~i~~g~---~-p~~va~spdG~~l~v~~~~--------~~~i~v~d~~t~   64 (301)
T d1l0qa2           3 FAYIANSES------DNISVIDVTSNKVTATIPVGS---N-PMGAVISPDGTKVYVANAH--------SNDVSIIDTATN   64 (301)
T ss_dssp             EEEEEETTT------TEEEEEETTTTEEEEEEECSS---S-EEEEEECTTSSEEEEEEGG--------GTEEEEEETTTT
T ss_pred             EEEEEECCC------CEEEEEECCCCeEEEEEECCC---C-ceEEEEeCCCCEEEEEECC--------CCEEEEEECCCC
Confidence            688887654      358999999998655333322   1 2344443  4568887643        356899999876


Q ss_pred             C
Q 016413          208 K  208 (390)
Q Consensus       208 ~  208 (390)
                      +
T Consensus        65 ~   65 (301)
T d1l0qa2          65 N   65 (301)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.54  E-value=5.7  Score=30.61  Aligned_cols=94  Identities=13%  Similarity=0.120  Sum_probs=50.3

Q ss_pred             eEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceee--c----CCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCC
Q 016413          123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD--R----FDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGP  195 (390)
Q Consensus       123 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~--~----~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~  195 (390)
                      +++.+++++|+|=|.        .+|+++.....+..  +    +.||.   .-..+... .++++|+|-|         
T Consensus        13 Av~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~i~~~w~~lp~---~IDAAf~~~~~~~~yffkg---------   72 (192)
T d1pexa_          13 AITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPN---RIDAAYEHPSHDLIFIFRG---------   72 (192)
T ss_dssp             EEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCS---SCCEEEEETTTTEEEEEET---------
T ss_pred             EEEEcCCeEEEEECC--------EEEEEcCCCCCCcccchhhhCcCCCC---cccceEEEcCCCEEEEEcC---------
Confidence            567789999999663        35665544333321  1    23443   12333322 3788998866         


Q ss_pred             CceEEEEECCCCCe---EeCCCC--CCCCCCceEE-E--ECCEEEEEccC
Q 016413          196 TSRTFVLDSETRKW---DSIPPL--PSPRYSPATQ-L--WRGRLHVMGGS  237 (390)
Q Consensus       196 ~~~v~~yd~~~~~W---~~~~~~--p~~r~~~~~~-~--~~~~iyv~GG~  237 (390)
                       +.+++|+..+...   +.+...  |.+-..-.++ .  .++++|+|-|.
T Consensus        73 -~~~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg~  121 (192)
T d1pexa_          73 -RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN  121 (192)
T ss_dssp             -TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT
T ss_pred             -CEEEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeCC
Confidence             4578887655433   233332  2221222233 3  25889999664

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=84.90  E-value=5.2  Score=32.95  Aligned_cols=91  Identities=7%  Similarity=-0.018  Sum_probs=47.9

Q ss_pred             CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (390)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  206 (390)
                      +++||+.....      ..|+++|+.... +.+...+.   +. .+++. -++.+|+.+-...      .-.....+...
T Consensus        38 dG~l~vt~~~~------~~I~~i~p~g~~-~~~~~~~~---~~-~gla~~~dG~l~v~~~~~~------~~~~~~~~~~~  100 (302)
T d2p4oa1          38 DGTIFVTNHEV------GEIVSITPDGNQ-QIHATVEG---KV-SGLAFTSNGDLVATGWNAD------SIPVVSLVKSD  100 (302)
T ss_dssp             TSCEEEEETTT------TEEEEECTTCCE-EEEEECSS---EE-EEEEECTTSCEEEEEECTT------SCEEEEEECTT
T ss_pred             CCCEEEEeCCC------CEEEEEeCCCCE-EEEEcCCC---Cc-ceEEEcCCCCeEEEecCCc------eEEEEEecccc
Confidence            67899875543      469999988664 33444432   22 23333 4778998863211      11222334444


Q ss_pred             CCeEeCCCCCCCCCCceEEE-ECCEEEEEc
Q 016413          207 RKWDSIPPLPSPRYSPATQL-WRGRLHVMG  235 (390)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~-~~~~iyv~G  235 (390)
                      .+-+.+...+........+. -++++|+.-
T Consensus       101 ~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~  130 (302)
T d2p4oa1         101 GTVETLLTLPDAIFLNGITPLSDTQYLTAD  130 (302)
T ss_dssp             SCEEEEEECTTCSCEEEEEESSSSEEEEEE
T ss_pred             cceeeccccCCccccceeEEccCCCEEeec
Confidence            44455544444443334443 366777763

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=84.88  E-value=14  Score=33.56  Aligned_cols=98  Identities=19%  Similarity=0.315  Sum_probs=57.6

Q ss_pred             ceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCc--eeecCCCCCC------CCCcceEEEEeCCEEEEEeceeCCCCC
Q 016413          122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKD------MAHSHLGVVSDGRYIYIVSGQYGPQCR  193 (390)
Q Consensus       122 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~------~~r~~~~~~~~~~~iyv~GG~~~~~~~  193 (390)
                      .+-++.+++|||....       ..|+.+|.+|.+  |+.-+..+..      ........+..+++||+...       
T Consensus        60 stPiv~~g~vyv~t~~-------~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------  125 (560)
T d1kv9a2          60 ATPLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------  125 (560)
T ss_dssp             CCCEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------
T ss_pred             eCCEEECCEEEEECCC-------CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC-------
Confidence            4457889999997542       358888888764  7753222210      01123355667888877642       


Q ss_pred             CCCceEEEEECCCCC--eEeCCC-CCCC-CCCceEEEECCEEEEEc
Q 016413          194 GPTSRTFVLDSETRK--WDSIPP-LPSP-RYSPATQLWRGRLHVMG  235 (390)
Q Consensus       194 ~~~~~v~~yd~~~~~--W~~~~~-~p~~-r~~~~~~~~~~~iyv~G  235 (390)
                        -..+..+|.++.+  |+.... .... ....+-++.++.+++-+
T Consensus       126 --~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~  169 (560)
T d1kv9a2         126 --DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGN  169 (560)
T ss_dssp             --TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECC
T ss_pred             --CCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccc
Confidence              3568888887754  766432 2222 22234457788877644

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.52  E-value=3.2  Score=32.31  Aligned_cols=14  Identities=14%  Similarity=0.453  Sum_probs=11.5

Q ss_pred             EEEEeCCEEEEEec
Q 016413          173 GVVSDGRYIYIVSG  186 (390)
Q Consensus       173 ~~~~~~~~iyv~GG  186 (390)
                      +++.++|++|+|-|
T Consensus        11 Av~~~~G~~y~Fkg   24 (195)
T d1itva_          11 AIAEIGNQLYLFKD   24 (195)
T ss_dssp             EEEEETTEEEEEET
T ss_pred             eEEEeCCEEEEEEC
Confidence            46678999999976

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=82.62  E-value=5.9  Score=32.60  Aligned_cols=121  Identities=12%  Similarity=-0.018  Sum_probs=65.9

Q ss_pred             cccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-
Q 016413           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-  176 (390)
Q Consensus        98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-  176 (390)
                      .++.+|.......+++.  ..|-......-+++.+++.|.+..    ..+.++|..+.+-..+..-..   . -.+++. 
T Consensus        25 ~v~v~d~~~~~~~~~~~--~~~v~~~~~spDg~~l~~~~~~~g----~~v~v~d~~~~~~~~~~~~~~---~-v~~~~~s   94 (360)
T d1k32a3          25 QAFIQDVSGTYVLKVPE--PLRIRYVRRGGDTKVAFIHGTREG----DFLGIYDYRTGKAEKFEENLG---N-VFAMGVD   94 (360)
T ss_dssp             EEEEECTTSSBEEECSC--CSCEEEEEECSSSEEEEEEEETTE----EEEEEEETTTCCEEECCCCCC---S-EEEEEEC
T ss_pred             eEEEEECCCCcEEEccC--CCCEEEEEECCCCCEEEEEEcCCC----CEEEEEECCCCcEEEeeCCCc---e-EEeeeec
Confidence            67777887777776632  222222222226777766665432    348999999988776654332   2 222333 


Q ss_pred             eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEcc
Q 016413          177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGG  236 (390)
Q Consensus       177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG  236 (390)
                      -+++..++++.        ...++.++..+.....+...........+..-+++.+++..
T Consensus        95 pdg~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~  146 (360)
T d1k32a3          95 RNGKFAVVAND--------RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGF  146 (360)
T ss_dssp             TTSSEEEEEET--------TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred             ccccccceecc--------ccccccccccccceeeeeecccccccchhhccceeeeeeec
Confidence            35656666543        34578888888776554333322222223333555555544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=82.49  E-value=4.5  Score=33.85  Aligned_cols=132  Identities=10%  Similarity=-0.035  Sum_probs=69.0

Q ss_pred             hhhcccccccCCCCeEEC-CCCCCcCCCceEEEE-CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcce
Q 016413           95 LSATFADLPAPDLEWEQM-PSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHL  172 (390)
Q Consensus        95 ~~~~~~~~~~~~~~W~~~-~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~  172 (390)
                      ....++++++........ .+..  ..-++++.. +++|||..-.+..  ....+..++..+.....+..-..+..+..-
T Consensus        59 ~~g~I~ri~p~g~~~~~~~~~~~--~~p~gla~~~dG~l~va~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd  134 (319)
T d2dg1a1          59 FEGNIFKINPETKEIKRPFVSHK--ANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGDNLQDIIEDLSTAYCIDD  134 (319)
T ss_dssp             TTCEEEEECTTTCCEEEEEECSS--SSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSCSCEEEECSSSSCCCEEE
T ss_pred             CCCEEEEEECCCCeEEEEEeCCC--CCeeEEEECCCCCEEEEecCCCc--cceeEEEEcCCCceeeeeccCCCcccCCcc
Confidence            344688888877654332 1111  112333333 5789987432211  134588888888776554322222223333


Q ss_pred             EEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC-CCCCCCCCceEEE--ECCEEEEEc
Q 016413          173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQL--WRGRLHVMG  235 (390)
Q Consensus       173 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~--~~~~iyv~G  235 (390)
                      .++.-++.||+..-....  ......++++++.....+.+. .+..|.   .++.  .++.||+.-
T Consensus       135 ~~~d~~G~l~vtd~~~~~--~~~~g~v~~~~~dg~~~~~~~~~~~~pn---Gia~s~dg~~lyvad  195 (319)
T d2dg1a1         135 MVFDSKGGFYFTDFRGYS--TNPLGGVYYVSPDFRTVTPIIQNISVAN---GIALSTDEKVLWVTE  195 (319)
T ss_dssp             EEECTTSCEEEEECCCBT--TBCCEEEEEECTTSCCEEEEEEEESSEE---EEEECTTSSEEEEEE
T ss_pred             eeEEeccceeeccccccc--ccCcceeEEEecccceeEEEeeccceee---eeeeccccceEEEec
Confidence            334457788876321111  134567999999887776653 222221   2232  244688884

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.25  E-value=9.7  Score=31.30  Aligned_cols=66  Identities=11%  Similarity=0.130  Sum_probs=37.3

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCC-eEECCCCCCCCCcceeEEEEECCEEEEEcCCCCC
Q 016413          282 NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK-WKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEK  359 (390)
Q Consensus       282 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~-W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~  359 (390)
                      .+++++.|+.++.                      |..|| .+.+ ...+..-..+......+....+++.++.|+.++.
T Consensus       217 ~~~~l~s~~~d~~----------------------i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~  274 (325)
T d1pgua1         217 SGEFVITVGSDRK----------------------ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT  274 (325)
T ss_dssp             TCCEEEEEETTCC----------------------EEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE
T ss_pred             cceeccccccccc----------------------eeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCe
Confidence            3577787887653                      88888 5443 3444322222222223333457778888876533


Q ss_pred             CCcceeeEEeeeEEEeecCccc
Q 016413          360 HPMTKRMILVGEVFQFHLDSLV  381 (390)
Q Consensus       360 ~~~~~~~~~~~~v~~yd~~~~~  381 (390)
                                  +.+||+++++
T Consensus       275 ------------i~iwd~~~~~  284 (325)
T d1pgua1         275 ------------IRVWDVTTSK  284 (325)
T ss_dssp             ------------EEEEETTTTE
T ss_pred             ------------EEEEECCCCC
Confidence                        6667766543

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=81.34  E-value=5.3  Score=30.83  Aligned_cols=44  Identities=23%  Similarity=0.488  Sum_probs=30.8

Q ss_pred             CCEEEEEeceeCCCCCCCCceEEEEECCCCC-----eEeCCCCCCCCCCceEEEECCEEEEEccC
Q 016413          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRK-----WDSIPPLPSPRYSPATQLWRGRLHVMGGS  237 (390)
Q Consensus       178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-----W~~~~~~p~~r~~~~~~~~~~~iyv~GG~  237 (390)
                      ++++|+|-|          +..++||..+..     |..++     .. -+++..++++|+|-|.
T Consensus       110 ~~~~yfFkg----------~~yw~yd~~~~~~~~~~w~gip-----~~-daA~~~~g~~YfFkg~  158 (192)
T d1qhua1         110 DEGILFFQG----------NRKWFWDLTTGTKKERSWPAVG-----NC-TSALRWLGRYYCFQGN  158 (192)
T ss_dssp             SSEEEEEET----------TEEEEEETTTTEEEEECCTTSC-----CC-SEEEEETTEEEEEETT
T ss_pred             CCeEEEEeC----------CeEEEEeCCCCCcccccccCcC-----Cc-ceeEEeCCcEEEEECC
Confidence            789999976          457889987763     44332     22 3556779999999764