Citrus Sinensis ID: 016421
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 390 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FKJ0 | 393 | F-box/kelch-repeat protei | yes | no | 0.915 | 0.908 | 0.754 | 1e-162 | |
| Q84M94 | 421 | F-box/kelch-repeat protei | no | no | 0.876 | 0.812 | 0.497 | 6e-98 | |
| Q8L736 | 467 | F-box/kelch-repeat protei | no | no | 0.915 | 0.764 | 0.490 | 3e-96 | |
| Q9CA63 | 451 | F-box/kelch-repeat protei | no | no | 0.864 | 0.747 | 0.478 | 2e-90 | |
| Q9LI89 | 422 | F-box/kelch-repeat protei | no | no | 0.869 | 0.803 | 0.373 | 6e-60 | |
| Q0WW40 | 383 | F-box/kelch-repeat protei | no | no | 0.764 | 0.778 | 0.248 | 5e-22 | |
| Q9CAG8 | 376 | F-box/kelch-repeat protei | no | no | 0.525 | 0.545 | 0.275 | 2e-19 | |
| Q9M1W7 | 352 | F-box/kelch-repeat protei | no | no | 0.743 | 0.823 | 0.255 | 3e-19 | |
| Q93W93 | 434 | F-box/kelch-repeat protei | no | no | 0.571 | 0.513 | 0.303 | 3e-19 | |
| Q9LM55 | 475 | F-box/kelch-repeat protei | no | no | 0.705 | 0.578 | 0.252 | 3e-17 |
| >sp|Q9FKJ0|FK132_ARATH F-box/kelch-repeat protein At5g60570 OS=Arabidopsis thaliana GN=At5g60570 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 570 bits (1469), Expect = e-162, Method: Compositional matrix adjust.
Identities = 270/358 (75%), Positives = 310/358 (86%), Gaps = 1/358 (0%)
Query: 34 NDGC-CRIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQ 92
NDG R+G SDS+LPGL+DDVALNCLA+ SDY SL +NK+++KLI SG+L+ LRK+
Sbjct: 36 NDGHRLRLGSSDSVLPGLIDDVALNCLAWVPRSDYPSLSCVNKKYNKLINSGHLFALRKE 95
Query: 93 LGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL 152
LGIVE+ V++VCDPRGW F PMKKKWM LPK+PCDECFNHADKESLAV ELLVFGREL
Sbjct: 96 LGIVEYLVFMVCDPRGWLMFSPMKKKWMVLPKMPCDECFNHADKESLAVDDELLVFGREL 155
Query: 153 FDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTT 212
F FAIWKYSL R W+KCEGM+ PRCLF SGSLG IAI+AGG+D NG++L SAELYDS++
Sbjct: 156 FQFAIWKYSLRSRCWVKCEGMHRPRCLFASGSLGGIAIVAGGTDMNGNILASAELYDSSS 215
Query: 213 GRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPN 272
GRWEMLP+MHSPRRLCSGFFMDGKFYVIGGMSSP VS+T GEEFDLETRKWRKIEGMYPN
Sbjct: 216 GRWEMLPNMHSPRRLCSGFFMDGKFYVIGGMSSPNVSVTFGEEFDLETRKWRKIEGMYPN 275
Query: 273 VNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA 332
VNRAAQAPPLV VV+N+L+ +EY TNMVKKYDK+KN W+V+GRLP D SNGWGLAFK
Sbjct: 276 VNRAAQAPPLVVVVNNELFTLEYSTNMVKKYDKVKNKWEVMGRLPPMVDSSNGWGLAFKP 335
Query: 333 CGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVLGC 390
CG++LLV GQRGP GE +V+NSWCPKSG +G LDWKVL K++VGVFVYNCAV+GC
Sbjct: 336 CGDQLLVFCGQRGPHGEGIVVNSWCPKSGAKDGNLDWKVLGVKENVGVFVYNCAVMGC 393
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84M94|FBK15_ARATH F-box/kelch-repeat protein At1g26930 OS=Arabidopsis thaliana GN=At1g26930 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 357 bits (917), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 179/360 (49%), Positives = 240/360 (66%), Gaps = 18/360 (5%)
Query: 43 SDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYL 102
S +L+PG+ D +L+CL +DY S+ +N+ LI+SG +Y LR+ G +EHWVY
Sbjct: 68 SGTLIPGMNRDDSLSCLIRCSRADYCSIASVNRSLRSLIRSGEIYRLRRLQGTLEHWVYF 127
Query: 103 VCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSL 162
C WEAFDP K+WM LP +P +ECF +ADKESLAVG++LLVFG E+ + I++YSL
Sbjct: 128 SCHLNEWEAFDPRSKRWMHLPSMPQNECFRYADKESLAVGTDLLVFGWEVSSYVIYRYSL 187
Query: 163 VFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH 222
+ SW + MN PRCLFGS S G IA++AGG D +G +L +AELY+ W +LP M+
Sbjct: 188 LTNSWSTAKSMNMPRCLFGSASYGEIAVLAGGCDSSGRILDTAELYNYEDQTWLVLPGMN 247
Query: 223 SPRRLCSGFFMDGKFYVIGGM-----SSPTVSLTCGEEFDLETRKWRKIEGMYP------ 271
R++CSG FMDGKFYVIGG+ + P V LTCGEEFDL+TRKW +I M P
Sbjct: 248 KRRKMCSGVFMDGKFYVIGGIGVGEENEPKV-LTCGEEFDLKTRKWTEIPEMSPPRSNQG 306
Query: 272 -NVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAF 330
++ AA APPLVAVV++QLYA ++ V++YDK K W+ +G LP +A NGWGLAF
Sbjct: 307 NGMSAAAMAPPLVAVVNDQLYAADHAGMAVRRYDKEKRVWNKVGNLPEQAGSMNGWGLAF 366
Query: 331 KACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVLGC 390
+ACG+ ++V+GG + P + LNSW P T +W +L +KQ V FVYNCAV+ C
Sbjct: 367 RACGDRIIVIGGPKAPGEGFIELNSWVPSV----TTPEWHLLGKKQSVN-FVYNCAVMSC 421
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L736|SKI11_ARATH F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 352 bits (903), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 182/371 (49%), Positives = 237/371 (63%), Gaps = 14/371 (3%)
Query: 30 KAGVNDGCCRIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGL 89
++ ND S SL+ + D +++CL SDY S+ +N+ F L+KSG +Y L
Sbjct: 101 QSDFNDNGGDSSDSHSLINEIGRDNSIDCLIRCSRSDYGSIASLNRNFRSLVKSGEIYRL 160
Query: 90 RKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFG 149
R+Q G VEHWVY C W AFDP++++WM LP +P F ADKESLAVG++LLV G
Sbjct: 161 RRQNGFVEHWVYFSCQLLEWVAFDPVERRWMQLPTMPSSVTFMCADKESLAVGTDLLVLG 220
Query: 150 RELF-DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELY 208
++ F I++YSL+ SW MN PRCLFGS SLG IAI AGG D G +L AE+Y
Sbjct: 221 KDDFSSHVIYRYSLLTNSWSSGMKMNSPRCLFGSASLGEIAIFAGGCDSQGKILDFAEMY 280
Query: 209 DSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGM-SSPTVSLTCGEEFDLETRKWRKIE 267
+S W LP M+ PR++CSG FMDGKFYVIGG+ + + LTCGEE+DLET+KW +I
Sbjct: 281 NSELQTWITLPRMNKPRKMCSGVFMDGKFYVIGGIGGADSKGLTCGEEYDLETKKWTQIP 340
Query: 268 GMYPNVNR--------AAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVR 319
+ P +R AA+APPLVAVV+NQLYA ++ V+KYDK W +GRLP R
Sbjct: 341 DLSPPRSRADQADMSPAAEAPPLVAVVNNQLYAADHADMEVRKYDKENKKWLTVGRLPER 400
Query: 320 ADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVG 379
A NGWGLAF+ACG L+V+GG + G + LNSW P G G W +L +++H
Sbjct: 401 AGSVNGWGLAFRACGERLIVIGGPKCSGGGFIELNSWIPSDG---GPPQWTLL-DRKHSP 456
Query: 380 VFVYNCAVLGC 390
FVYNCAV+GC
Sbjct: 457 TFVYNCAVMGC 467
|
Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA63|FBK29_ARATH F-box/kelch-repeat protein At1g74510 OS=Arabidopsis thaliana GN=At1g74510 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (853), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 171/357 (47%), Positives = 220/357 (61%), Gaps = 20/357 (5%)
Query: 50 LVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGW 109
L + LNCLA SD+ S+ N+ F LIK LY LR+ GIVEHW+Y C W
Sbjct: 99 LDQNALLNCLAHCSLSDFGSIASTNRTFRSLIKDSELYRLRRAKGIVEHWIYFSCRLLEW 158
Query: 110 EAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMK 169
EA+DP +W+ +PK+ +ECF +DKESLAVG+ELLVFG+E+ I++YS++ +W
Sbjct: 159 EAYDPNGDRWLRVPKMTFNECFMCSDKESLAVGTELLVFGKEIMSHVIYRYSILTNTWTS 218
Query: 170 CEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCS 229
MN PRCLFGS SLG IA+IAGG D G +L SAELY+S TG W ++PSM+ R++CS
Sbjct: 219 GMQMNVPRCLFGSASLGEIAVIAGGCDPRGRILSSAELYNSETGEWTVIPSMNKARKMCS 278
Query: 230 GFFMDGKFYVIGGMSSPTVS-LTCGEEFDLETRKWRKIEGMYPNVNRAA----------- 277
FMDG FY IGG+ L CGE +DL+ + W I M P +
Sbjct: 279 SVFMDGNFYCIGGIGEGNSKMLLCGEVYDLKKKTWTLIPNMLPERSSGGGGDQAKEIAAA 338
Query: 278 ----QAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC 333
+APPLVAVV ++LYA Y VKKYDK N W+ +G LP RA NGWG+AF+AC
Sbjct: 339 TAASEAPPLVAVVKDELYAANYAQQEVKKYDKRLNVWNKVGNLPERASSMNGWGMAFRAC 398
Query: 334 GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVLGC 390
G++L+VVGG R G + +N+ P G L W+VLA K G FVYNCAV+GC
Sbjct: 399 GDQLVVVGGPRAIGGGFIEINACVPSEGTQ---LHWRVLASKPS-GNFVYNCAVMGC 451
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LI89|FBK70_ARATH F-box/kelch-repeat protein At3g27150 OS=Arabidopsis thaliana GN=At3g27150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (589), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 132/353 (37%), Positives = 198/353 (56%), Gaps = 14/353 (3%)
Query: 47 LPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDP 106
+P LV ++ + LA +Y L +NK F +L+KS ++ +R++ G+VE V+++
Sbjct: 71 VPQLVYELEVEILARVPRFEYWKLKLLNKGFSRLLKSDEIFKVRRERGVVEPSVFMLSSG 130
Query: 107 RG-WEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFR 165
W FD LP++P D CF H DKESL G+ L+V G+E A+W+Y L
Sbjct: 131 DTCWTMFDKGFGNCQKLPELPSDICFLHGDKESLCAGTHLIVTGKEEKSIALWRYELETS 190
Query: 166 SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGH----VLKSAELYDSTTGRWEMLPSM 221
W K M PR LF S + G++ +AGG G+ V+ S E YDS T W +L M
Sbjct: 191 KWFKGPAMITPRILFASATCGTVVFVAGGLKIEGNGTMEVVDSVEKYDSKTKTWTLLRGM 250
Query: 222 HSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVN-RAAQAP 280
H R+ CSG ++ GKFYV+GG +LTCGE +D +T W I + +++ + Q+P
Sbjct: 251 HKRRKFCSGCYLRGKFYVLGGRDENGQNLTCGESYDEKTNTWELIPDILKDMSFSSVQSP 310
Query: 281 PLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVV 340
PL+AVV + LY++E N ++ YD N+W LG +PVRA + GWG+AFK+ G++LLV+
Sbjct: 311 PLIAVVGDDLYSLETSANELRVYDANANSWKKLGDVPVRAKSNGGWGVAFKSLGDKLLVI 370
Query: 341 GGQRGP-EGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGV----FVYNCAVL 388
G GP E + + + P + N L W+ K+ GV F+ NC V+
Sbjct: 371 GASAGPSRAETMSVYTSRPSANPAN-KLYWE--ESKRCCGVRFNHFILNCCVM 420
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WW40|FBK5_ARATH F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana GN=At1g16250 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/322 (24%), Positives = 138/322 (42%), Gaps = 24/322 (7%)
Query: 44 DSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLV 103
S++PGL DD+AL C+A + L +++ + L++ + + G W++++
Sbjct: 6 QSIIPGLPDDLALRCIAKLSHGYHGVLECVSRGWRDLVRGADYSCYKARNGWSGSWLFVL 65
Query: 104 CD--PRGWEAFDPMKKKWMALPKI-PCDECFNHADKESLAVGSELLVFG----------- 149
+ W A+DP +W LP+ + ++H+ + V + LLV G
Sbjct: 66 TERSKNQWVAYDPEADRWHPLPRTRAVQDGWHHSGFACVCVSNCLLVIGGCYAPSVSSFP 125
Query: 150 --RELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSD-KNGHVLKSAE 206
+ + + ++ + W M PR F S+ +AGG + + + SAE
Sbjct: 126 HQKPVVTKDVMRFDPFKKQWKMVASMRTPRTHFACTSVSGKVYVAGGRNLTHSRGIPSAE 185
Query: 207 LYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKI 266
+YD RWE LP+M P+ CSG G F+V+ E F+ W +
Sbjct: 186 VYDPVADRWEELPAMPRPQMDCSGLSYRGCFHVLSDQVG-FAEQNSSEVFNPRDMTWSTV 244
Query: 267 EGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGR-----LPVRAD 321
E ++P +RA Q V D V++ +++K D + W +G LP
Sbjct: 245 EDVWP-FSRAMQFAVQVMKNDRVYTIVDWGESLIKTRDTDEGEWYNVGSVPSVVLPNHPR 303
Query: 322 LSNGWGLAFKACGNELLVVGGQ 343
+G F A NEL V+GG+
Sbjct: 304 ELEAFGYGFAALRNELYVIGGK 325
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAG8|FBK28_ARATH F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 9/214 (4%)
Query: 44 DSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLV 103
D L+PGL DDVA CLA + + S+ + K++ +++S +R+ G++E W+Y++
Sbjct: 37 DPLIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVL 96
Query: 104 CDPRG-----WEAFDPMKKKWMALPKIPCDECFNH----ADKESLAVGSELLVFGRELFD 154
G WE D + +K +LP +P D + L + ++ G +
Sbjct: 97 TMNAGGKDNRWEVMDCLGQKLSSLPPMPGPAKTGFKVVVVDGKLLVIAGCCMINGSLVAS 156
Query: 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR 214
+++Y SW + + R F + + GG +G L SAE+YD T
Sbjct: 157 ADVYQYDTCLNSWSRLADLEVARYDFACAEVNGHVYVVGGHGVDGESLSSAEVYDPETCT 216
Query: 215 WEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTV 248
W + S+ PR C +GK YV+GG S+ T+
Sbjct: 217 WTFIESLRRPRWGCFASAFNGKLYVMGGRSNFTI 250
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1W7|SKI30_ARATH F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana GN=SKIP30 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 142/333 (42%), Gaps = 43/333 (12%)
Query: 37 CCRIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIV 96
C R LL G+ + VAL CLA + +L +++ + I+S L+ +RK+L
Sbjct: 2 CYRQETMSGLLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSS 61
Query: 97 EHWVYLVC--DPRG-WEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGR--- 150
EH + VC DP W+ + P +W+ LP +P + A ++ L V G
Sbjct: 62 EH-LLCVCAFDPENIWQVYSPNCDRWLTLPLLP-SRIRHLAHFGAVTTAGMLFVLGGGSD 119
Query: 151 -----------ELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNG 199
+W Y V R W M PR +F L ++AGG
Sbjct: 120 AVSPVTGDHDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTCR 179
Query: 200 HVLKSAELYDSTTGRWEMLPSMHSPRR-LCSGFFMDGKFYVIG-GMSSPTVSLTCGEEFD 257
+ AE+YD W +P +H CSG ++GK +V+ G+S+ V + +D
Sbjct: 180 KSISGAEMYDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTVQVLESVKLGWD 239
Query: 258 LETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLP 317
++ W Q P + VV++ LY + + +V K + +TW ++
Sbjct: 240 VKDYGW-------------PQGP--MVVVEDVLYVMSH--GLVFKQE--GDTWKMVAS-- 278
Query: 318 VRADLSNGWGLAFKACGNELLVVGGQRGPEGEN 350
++ G+A + +E+L+VGG GP+ N
Sbjct: 279 -ASEFKRRIGMAMTSLSDEVLIVGGVIGPDRLN 310
|
Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93W93|FBK22_ARATH F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 110/244 (45%), Gaps = 21/244 (8%)
Query: 39 RIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEH 98
RI P LLPGL DD+A+ CL +++ L + KR+++L + Y RK LG+ E
Sbjct: 73 RIQPP--LLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEE 130
Query: 99 WVYLVCDPR----GWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--GSELLVFG--- 149
WVY+ R W FDP+ + W LP +P + ++ A AV G L +FG
Sbjct: 131 WVYVFKRDRDGKISWNTFDPISQLWQPLPPVPRE--YSEAVGFGCAVLSGCHLYLFGGKD 188
Query: 150 --RELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGS-DKNGHVLKSAE 206
R I+ Y+ W + M R FG + + +AGG + L+SAE
Sbjct: 189 PLRGSMRRVIF-YNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGECEGIQRTLRSAE 247
Query: 207 LYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKI 266
+YD RW + M + G D K+++ G S L E +D E W +
Sbjct: 248 VYDPNKNRWSFIADMSTAMVPLIGVVYDKKWFLKGLGSH---QLVMSEAYDPEVNSWSPV 304
Query: 267 -EGM 269
+GM
Sbjct: 305 SDGM 308
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LM55|FBK8_ARATH F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana GN=At1g22040 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 139/352 (39%), Gaps = 77/352 (21%)
Query: 37 CCRIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIV 96
CCR L+P L D++++ LA Y+S+ +++R+ + + +Y LRK+LG
Sbjct: 40 CCR------LIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRT 93
Query: 97 EHWVYLVC----DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESL------------- 139
E W+Y++ D W A DP+ KW LP +P + ++SL
Sbjct: 94 EEWLYVLTKGHEDKLLWYALDPVSTKWQRLPPMPV-VVYEEESRKSLSGLWNMITPSFNV 152
Query: 140 -------------------------AVGSELLVFG---RELFDFAIWKYSLVFRSWMKCE 171
AV L V G R +W++ + SW +
Sbjct: 153 GAIVRSFLGRRDSSEQMPFCGCAIGAVDGGLYVIGGLSRSKTVSCVWRFDPILNSWSEVS 212
Query: 172 GMNHPRCLFGSGSLGS---IAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM--HSPRR 226
M R +G L + L+SAE+YD +T W +PSM +
Sbjct: 213 SMLASRAYSKTGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDAWSEVPSMPFSKAQV 272
Query: 227 LCSGFFMDGKFYVIGGM--------------SSPTVSLTCGEEFDLETRKWRKI-EGMYP 271
L + F D + GM S P GE +D ET W ++ GM
Sbjct: 273 LPNAFLADLLKPIATGMTCYNGRLCVPQSLYSWPFFVDVGGEVYDPETNLWVEMPSGMGE 332
Query: 272 NVNRAAQAPPLVAVVDNQLYAVEYLTNM----VKKYDKLKNTWD-VLGRLPV 318
L VVD +LYA + ++M +K YD+ ++TW V+G +PV
Sbjct: 333 GWPARQAGTKLSVVVDGELYAFDPSSSMENGKIKVYDQKEDTWKVVIGEVPV 384
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 390 | ||||||
| 255578874 | 376 | ubiquitin-protein ligase, putative [Rici | 0.956 | 0.992 | 0.873 | 0.0 | |
| 359478694 | 416 | PREDICTED: F-box/kelch-repeat protein At | 0.958 | 0.899 | 0.823 | 1e-178 | |
| 297746245 | 364 | unnamed protein product [Vitis vinifera] | 0.925 | 0.991 | 0.842 | 1e-177 | |
| 356539450 | 397 | PREDICTED: LOW QUALITY PROTEIN: F-box/ke | 0.992 | 0.974 | 0.751 | 1e-170 | |
| 356550208 | 389 | PREDICTED: F-box/kelch-repeat protein At | 0.997 | 1.0 | 0.746 | 1e-170 | |
| 363806760 | 364 | uncharacterized protein LOC100820005 [Gl | 0.920 | 0.986 | 0.791 | 1e-168 | |
| 356544608 | 397 | PREDICTED: F-box/kelch-repeat protein At | 0.989 | 0.972 | 0.75 | 1e-168 | |
| 449462117 | 380 | PREDICTED: F-box/kelch-repeat protein At | 0.971 | 0.997 | 0.744 | 1e-166 | |
| 449519430 | 381 | PREDICTED: F-box/kelch-repeat protein At | 0.923 | 0.944 | 0.761 | 1e-163 | |
| 449456000 | 376 | PREDICTED: F-box/kelch-repeat protein At | 0.958 | 0.994 | 0.738 | 1e-162 |
| >gi|255578874|ref|XP_002530291.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223530189|gb|EEF32098.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/373 (87%), Positives = 350/373 (93%)
Query: 18 EEEAASLSVVSWKAGVNDGCCRIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRF 77
EEE S S+++ + GVNDG R+G SDSLLPGL+DDVALNCLA+AC SDYASL INKRF
Sbjct: 4 EEEVMSRSIINTRGGVNDGRLRLGSSDSLLPGLIDDVALNCLAWACRSDYASLACINKRF 63
Query: 78 HKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKE 137
HKLI+SGYLYGLRKQLGI EHWVYLVCDPRGWEAFDP++KKWMALPKIPCDECFNHADKE
Sbjct: 64 HKLIESGYLYGLRKQLGITEHWVYLVCDPRGWEAFDPVRKKWMALPKIPCDECFNHADKE 123
Query: 138 SLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDK 197
SLAVGSELLVFGRELFDFAIWKYSL+ R W+KCEGMN PRCLFGSGSLGSIA++AGGSDK
Sbjct: 124 SLAVGSELLVFGRELFDFAIWKYSLIRRGWVKCEGMNRPRCLFGSGSLGSIAVVAGGSDK 183
Query: 198 NGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFD 257
NG+VL SAELYDS+TG+WEMLP+MHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEE+D
Sbjct: 184 NGNVLNSAELYDSSTGKWEMLPNMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEYD 243
Query: 258 LETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLP 317
ETRKWR IEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDK+KNTW+VLGRLP
Sbjct: 244 FETRKWRMIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKVKNTWEVLGRLP 303
Query: 318 VRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQH 377
VRAD SNGWGLAFKACG +LLVVGGQRGPEGE VVLNSWCPKSGVNNGTLDWKVL K+H
Sbjct: 304 VRADSSNGWGLAFKACGEKLLVVGGQRGPEGEAVVLNSWCPKSGVNNGTLDWKVLGVKEH 363
Query: 378 VGVFVYNCAVLGC 390
VGVFVYNCAV+GC
Sbjct: 364 VGVFVYNCAVMGC 376
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359478694|ref|XP_002282284.2| PREDICTED: F-box/kelch-repeat protein At5g60570-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 308/374 (82%), Positives = 334/374 (89%)
Query: 17 EEEEAASLSVVSWKAGVNDGCCRIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKR 76
+EE +LS + K V DGC +I + SLLPGL DDVAL CLA AC SDYASL +N R
Sbjct: 43 KEEMETNLSNMRSKRRVYDGCGQIETNGSLLPGLCDDVALKCLALACRSDYASLSCLNTR 102
Query: 77 FHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADK 136
F+KLIKSG LYG RK LGI EHWVYLVCD RGWEAFD M+KKWM LPKIPCDECFNHADK
Sbjct: 103 FNKLIKSGNLYGERKVLGIAEHWVYLVCDLRGWEAFDAMRKKWMKLPKIPCDECFNHADK 162
Query: 137 ESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSD 196
ESLAVGSELLVFGRE +DFAIWKYSLV +W+KC+GMN PRCLFGS SLGSIAI+AGGSD
Sbjct: 163 ESLAVGSELLVFGREFYDFAIWKYSLVRGNWIKCQGMNLPRCLFGSSSLGSIAIVAGGSD 222
Query: 197 KNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEF 256
K+G+VLKSAELYDS++GRWEMLP+MHSPRRLCSGFFMDGKFYVIGGM+SPT SLTCGEEF
Sbjct: 223 KSGNVLKSAELYDSSSGRWEMLPNMHSPRRLCSGFFMDGKFYVIGGMTSPTDSLTCGEEF 282
Query: 257 DLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRL 316
DL+TR+WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDK KNTWDVLGRL
Sbjct: 283 DLKTREWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKEKNTWDVLGRL 342
Query: 317 PVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQ 376
PVRADLSNGWGLAFKACG +LLVVGGQRGPEGE VVLNSW PKSGV +GTLDWKV+ K+
Sbjct: 343 PVRADLSNGWGLAFKACGEQLLVVGGQRGPEGEAVVLNSWHPKSGVKDGTLDWKVIGVKE 402
Query: 377 HVGVFVYNCAVLGC 390
HVGVFVYNCAV+GC
Sbjct: 403 HVGVFVYNCAVMGC 416
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297746245|emb|CBI16301.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 304/361 (84%), Positives = 327/361 (90%)
Query: 30 KAGVNDGCCRIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGL 89
K V DGC +I + SLLPGL DDVAL CLA AC SDYASL +N RF+KLIKSG LYG
Sbjct: 4 KRRVYDGCGQIETNGSLLPGLCDDVALKCLALACRSDYASLSCLNTRFNKLIKSGNLYGE 63
Query: 90 RKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFG 149
RK LGI EHWVYLVCD RGWEAFD M+KKWM LPKIPCDECFNHADKESLAVGSELLVFG
Sbjct: 64 RKVLGIAEHWVYLVCDLRGWEAFDAMRKKWMKLPKIPCDECFNHADKESLAVGSELLVFG 123
Query: 150 RELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYD 209
RE +DFAIWKYSLV +W+KC+GMN PRCLFGS SLGSIAI+AGGSDK+G+VLKSAELYD
Sbjct: 124 REFYDFAIWKYSLVRGNWIKCQGMNLPRCLFGSSSLGSIAIVAGGSDKSGNVLKSAELYD 183
Query: 210 STTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGM 269
S++GRWEMLP+MHSPRRLCSGFFMDGKFYVIGGM+SPT SLTCGEEFDL+TR+WRKIEGM
Sbjct: 184 SSSGRWEMLPNMHSPRRLCSGFFMDGKFYVIGGMTSPTDSLTCGEEFDLKTREWRKIEGM 243
Query: 270 YPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLA 329
YPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDK KNTWDVLGRLPVRADLSNGWGLA
Sbjct: 244 YPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKEKNTWDVLGRLPVRADLSNGWGLA 303
Query: 330 FKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVLG 389
FKACG +LLVVGGQRGPEGE VVLNSW PKSGV +GTLDWKV+ K+HVGVFVYNCAV+G
Sbjct: 304 FKACGEQLLVVGGQRGPEGEAVVLNSWHPKSGVKDGTLDWKVIGVKEHVGVFVYNCAVMG 363
Query: 390 C 390
C
Sbjct: 364 C 364
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539450|ref|XP_003538211.1| PREDICTED: LOW QUALITY PROTEIN: F-box/kelch-repeat protein At5g60570-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 294/391 (75%), Positives = 334/391 (85%), Gaps = 4/391 (1%)
Query: 1 MIKKARLDDIMEEVEKEEEEAASLSVVSWKAGVNDGCCRIGPSDSLLPGLVDDVALNCLA 60
M KK RLD ++E EE+ S + + GVNDG R+GP+DSLLPGL DDVALNCLA
Sbjct: 1 MTKKIRLDCSLQE--DEEKVNNSFVELDTREGVNDGFPRVGPNDSLLPGLFDDVALNCLA 58
Query: 61 FACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVE--HWVYLVCDPRGWEAFDPMKKK 118
+ SDYASL INKR++ LI+SGYL+ LRK+LGIVE HW LVCDPRGWE FDP + +
Sbjct: 59 WVNRSDYASLACINKRYNLLIRSGYLFELRKKLGIVELEHWFILVCDPRGWEVFDPKRNR 118
Query: 119 WMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRC 178
W+ LPKIP DECFNHADKESLAVGSELLVFGRE+ DFAIWKYSL+ R W+KC+ MNHPRC
Sbjct: 119 WITLPKIPWDECFNHADKESLAVGSELLVFGREMMDFAIWKYSLISRGWVKCKEMNHPRC 178
Query: 179 LFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFY 238
LFGSGSLGSIAI+AGGSDK G+VL+SAELYDS +G W++LP+MH+PRRLCSGFFMDGKFY
Sbjct: 179 LFGSGSLGSIAIVAGGSDKYGNVLESAELYDSNSGTWKLLPNMHTPRRLCSGFFMDGKFY 238
Query: 239 VIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTN 298
VIGGMSSPTVSLTCGEE+DL+TR WRKIE MYP VN AAQAPPLVAVVDNQLYAVE+LTN
Sbjct: 239 VIGGMSSPTVSLTCGEEYDLKTRNWRKIERMYPYVNGAAQAPPLVAVVDNQLYAVEHLTN 298
Query: 299 MVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCP 358
MV+KYDK +NTW LGRLPVRAD SNGWGLAFKACG +LLVV GQR PEGE VVLNSWCP
Sbjct: 299 MVRKYDKERNTWSELGRLPVRADSSNGWGLAFKACGEKLLVVSGQRSPEGEAVVLNSWCP 358
Query: 359 KSGVNNGTLDWKVLAEKQHVGVFVYNCAVLG 389
++GV NGT+DW+VL K+HVGVFVYNCAV+G
Sbjct: 359 RTGVRNGTIDWQVLGVKEHVGVFVYNCAVMG 389
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550208|ref|XP_003543480.1| PREDICTED: F-box/kelch-repeat protein At5g60570-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust.
Identities = 291/390 (74%), Positives = 333/390 (85%), Gaps = 1/390 (0%)
Query: 1 MIKKARLDDIMEEVEKEEEEAASLSVVSWKAGVNDGCCRIGPSDSLLPGLVDDVALNCLA 60
M KK RL + E++ ++ + + GVNDG GP+DSL+PGL+DDVALNCLA
Sbjct: 1 MTKKLRLGCSFQG-EEDGKKVNNFLEMDRGEGVNDGFSGPGPNDSLIPGLIDDVALNCLA 59
Query: 61 FACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWM 120
+ SDYA L INKRF+KLI SGYLYGLRKQLG VEH VY+VCDPRGW AFDP +W+
Sbjct: 60 WVSGSDYAVLSCINKRFNKLINSGYLYGLRKQLGAVEHLVYMVCDPRGWVAFDPKINRWI 119
Query: 121 ALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLF 180
+LPKIPCDECFNHADKESLAVG ELLVFGREL +FAIWKYS++ R W+KC+ MN PRCLF
Sbjct: 120 SLPKIPCDECFNHADKESLAVGCELLVFGRELMEFAIWKYSMICRGWVKCQEMNQPRCLF 179
Query: 181 GSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVI 240
GS SLGSIAI+AGGSDK G+VLKSAELYDS+TG WE+LP+MH+PRRLCSGFFMDGKFYVI
Sbjct: 180 GSSSLGSIAIVAGGSDKYGNVLKSAELYDSSTGMWELLPNMHAPRRLCSGFFMDGKFYVI 239
Query: 241 GGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMV 300
GGMSS TVSL+CGEE+DL+TR WRKIEGMYP VN QAPPLVAVVDNQLYAVE+LTNMV
Sbjct: 240 GGMSSTTVSLSCGEEYDLKTRSWRKIEGMYPYVNVGVQAPPLVAVVDNQLYAVEHLTNMV 299
Query: 301 KKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360
KKYDK +NTW+ LGRLPVRAD SNGWGLAFKACG +LLVVGGQRGPEGE +VL+SWCPKS
Sbjct: 300 KKYDKERNTWNELGRLPVRADSSNGWGLAFKACGEQLLVVGGQRGPEGEAIVLSSWCPKS 359
Query: 361 GVNNGTLDWKVLAEKQHVGVFVYNCAVLGC 390
G++NGT+DW+VL K+HVGVFVYNCAV+GC
Sbjct: 360 GISNGTIDWQVLGVKEHVGVFVYNCAVMGC 389
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363806760|ref|NP_001242021.1| uncharacterized protein LOC100820005 [Glycine max] gi|255641445|gb|ACU20998.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 284/359 (79%), Positives = 317/359 (88%)
Query: 32 GVNDGCCRIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRK 91
G NDG GP+DSLLPGL+DDVALNCLA+ SDYA+L INKRF+KLI SGYLYGLRK
Sbjct: 6 GANDGFSGPGPNDSLLPGLIDDVALNCLAWVSGSDYAALSCINKRFNKLIHSGYLYGLRK 65
Query: 92 QLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRE 151
QLG VEH VY+VCDPRGW AFDP +WM+LPKIPCDECFNHADKESLAVG ELLVFGRE
Sbjct: 66 QLGAVEHLVYMVCDPRGWVAFDPKINRWMSLPKIPCDECFNHADKESLAVGCELLVFGRE 125
Query: 152 LFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDST 211
L +FAIWKYS++ R W+KC+ MN PRCLFGS SLGSIAI+AGGSDK G+VLKSAELYDS+
Sbjct: 126 LMEFAIWKYSMICRGWVKCQEMNQPRCLFGSSSLGSIAIVAGGSDKYGNVLKSAELYDSS 185
Query: 212 TGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYP 271
TG WE LP+MH+ RRLCSGFFMDGKFYVIGGMSS TVSL+CGEE+DL+TR WRKIEGMYP
Sbjct: 186 TGMWEPLPNMHTSRRLCSGFFMDGKFYVIGGMSSTTVSLSCGEEYDLKTRSWRKIEGMYP 245
Query: 272 NVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK 331
VN QAPPLVAVVDNQLYAVE+LTNM KKYDK KNTW+ LGRLPVRAD SNGWGLAFK
Sbjct: 246 YVNVGVQAPPLVAVVDNQLYAVEHLTNMAKKYDKEKNTWNELGRLPVRADSSNGWGLAFK 305
Query: 332 ACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVLGC 390
CG +LLVVGGQRGPEGE++VL+SWCPKSG++NGT+DW+VL K+HVGVFVYNCAV+GC
Sbjct: 306 VCGEQLLVVGGQRGPEGESIVLSSWCPKSGISNGTIDWQVLGVKEHVGVFVYNCAVMGC 364
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544608|ref|XP_003540741.1| PREDICTED: F-box/kelch-repeat protein At5g60570-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 294/392 (75%), Positives = 330/392 (84%), Gaps = 6/392 (1%)
Query: 1 MIKKARLD-DIMEEVEKEEEEAASLSVVSWKAGVNDGCCRIGPSDSLLPGLVDDVALNCL 59
M K+ R D + E+VEK L + G+NDG R GP+DSLLPGL DDVALNCL
Sbjct: 1 MTKRIRKDCSLQEDVEKVNNSFVELDT---REGMNDGFPRAGPNDSLLPGLFDDVALNCL 57
Query: 60 AFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVE--HWVYLVCDPRGWEAFDPMKK 117
A+A SDYASL INKR++ LI+SGYL LRK+LGIVE H VYLVCDPRGWE FDP K
Sbjct: 58 AWASRSDYASLACINKRYNLLIRSGYLSELRKKLGIVELEHLVYLVCDPRGWEVFDPKKN 117
Query: 118 KWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR 177
+W+ LPKIPCDECFNHADKESLAVGSE+LVFGREL DFAIWKYSL+ +W+KC+ MN PR
Sbjct: 118 RWITLPKIPCDECFNHADKESLAVGSEMLVFGRELMDFAIWKYSLISCNWVKCKEMNRPR 177
Query: 178 CLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKF 237
CLFGSG+LGSIAI+AGGSDK G+VL+SAELYDS +G WE+LP+MH+PRRLCSGFFMDGKF
Sbjct: 178 CLFGSGNLGSIAIVAGGSDKYGNVLESAELYDSNSGTWELLPNMHTPRRLCSGFFMDGKF 237
Query: 238 YVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT 297
YVIGGMSSP VSLTCGEE+DL+TR WRKIEGMYP VN AAQAPPLVAVVDNQLYAVE+LT
Sbjct: 238 YVIGGMSSPIVSLTCGEEYDLKTRNWRKIEGMYPYVNGAAQAPPLVAVVDNQLYAVEHLT 297
Query: 298 NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWC 357
NMV KYDK +NTW LGRLPVRAD SNGWGLAFKACG +LLVV GQRGPEGE VVLNSW
Sbjct: 298 NMVNKYDKERNTWSELGRLPVRADSSNGWGLAFKACGEKLLVVSGQRGPEGEAVVLNSWR 357
Query: 358 PKSGVNNGTLDWKVLAEKQHVGVFVYNCAVLG 389
P++G NGT+DWKVL K+HVGVFVYNCAV+G
Sbjct: 358 PRTGFRNGTIDWKVLGVKEHVGVFVYNCAVMG 389
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462117|ref|XP_004148788.1| PREDICTED: F-box/kelch-repeat protein At5g60570-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 283/380 (74%), Positives = 323/380 (85%), Gaps = 1/380 (0%)
Query: 11 MEEVEKEEEEAASLSVVSWKAGVNDGCCRIGPSDSLLPGLVDDVALNCLAFACTSDYASL 70
ME KEEEE L ++ + VNDG +G SDSL PGL+DDVALNCLA+ C SDY +L
Sbjct: 1 MEVDSKEEEEVPHLLDLNSRGRVNDGH-HLGSSDSLFPGLIDDVALNCLAWTCQSDYTAL 59
Query: 71 LFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDEC 130
+N RF+KL+++G LY RK LGI EHWVYLVCD +GWEAFDP++K WM LPK+PCDEC
Sbjct: 60 SCLNSRFNKLVRNGDLYEWRKHLGIKEHWVYLVCDLKGWEAFDPLRKVWMTLPKMPCDEC 119
Query: 131 FNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAI 190
FNHADKESLAVG+ELLVFGRE+FDFAIWKY+ SW KC+GMN PRCLFGSGSLGSIAI
Sbjct: 120 FNHADKESLAVGTELLVFGREMFDFAIWKYNSTCNSWAKCQGMNRPRCLFGSGSLGSIAI 179
Query: 191 IAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSL 250
+AGGSD NG+VL SAELYDS+ G WEMLP M +PRRLCSGFFMDGKF+VIGGMSS TVSL
Sbjct: 180 VAGGSDMNGNVLDSAELYDSSLGTWEMLPKMTTPRRLCSGFFMDGKFFVIGGMSSSTVSL 239
Query: 251 TCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTW 310
TCGEE++ +TRKWRKIEGMYP VNRAAQAPPLVAVVDNQLYAVEYLTN+VK+YDK+KNTW
Sbjct: 240 TCGEEYNFQTRKWRKIEGMYPYVNRAAQAPPLVAVVDNQLYAVEYLTNLVKRYDKIKNTW 299
Query: 311 DVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWK 370
+VLGRLP+RAD SNGWGLAFKACG ELLV+GGQ+GP GE +VLN+ PK G+ NG LDWK
Sbjct: 300 NVLGRLPLRADSSNGWGLAFKACGEELLVIGGQKGPNGEAIVLNACSPKFGMRNGGLDWK 359
Query: 371 VLAEKQHVGVFVYNCAVLGC 390
L K+HVGVFVYNCAV+GC
Sbjct: 360 FLGVKEHVGVFVYNCAVMGC 379
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449519430|ref|XP_004166738.1| PREDICTED: F-box/kelch-repeat protein At5g60570-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 275/361 (76%), Positives = 313/361 (86%), Gaps = 1/361 (0%)
Query: 30 KAGVNDGCCRIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGL 89
+ VNDG +G SDSL PGL+DDVALNCLA+ C SDY +L +N RF+KL+++G LY
Sbjct: 21 RGRVNDGH-HLGSSDSLFPGLIDDVALNCLAWTCQSDYTALSCLNSRFNKLVRNGDLYEW 79
Query: 90 RKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFG 149
RK LGI EHWVYLVCD +GWEAFDP++K WM LPK+PCDECFNHADKESLAVG+ELLVFG
Sbjct: 80 RKHLGIKEHWVYLVCDLKGWEAFDPLRKVWMTLPKMPCDECFNHADKESLAVGTELLVFG 139
Query: 150 RELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYD 209
RE+FDFAIWKY+ SW KC+GMN PRCLFGSGSLGSIAI+AGGSD NG+VL SAELYD
Sbjct: 140 REMFDFAIWKYNSTCNSWAKCQGMNRPRCLFGSGSLGSIAIVAGGSDMNGNVLDSAELYD 199
Query: 210 STTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGM 269
S+ G WEMLP M +PRRLCSGFFMDGKF+VIGGMSS TVSLTCGEE++ +TRKWRKIEGM
Sbjct: 200 SSLGTWEMLPKMTTPRRLCSGFFMDGKFFVIGGMSSSTVSLTCGEEYNFQTRKWRKIEGM 259
Query: 270 YPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLA 329
YP VNRAAQAPPLVAVVDNQLYAVEYLTN+VK+YDK+KNTW+VLGRLP+RAD SNGWGLA
Sbjct: 260 YPYVNRAAQAPPLVAVVDNQLYAVEYLTNLVKRYDKIKNTWNVLGRLPLRADSSNGWGLA 319
Query: 330 FKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVLG 389
FKACG ELLV+GGQ+GP GE +VLN+ PK G+ NG LDWK L K+HVGVFVYNCAV+G
Sbjct: 320 FKACGEELLVIGGQKGPNGEAIVLNACSPKFGMRNGGLDWKFLGVKEHVGVFVYNCAVMG 379
Query: 390 C 390
C
Sbjct: 380 C 380
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456000|ref|XP_004145738.1| PREDICTED: F-box/kelch-repeat protein At5g60570-like [Cucumis sativus] gi|449502494|ref|XP_004161656.1| PREDICTED: F-box/kelch-repeat protein At5g60570-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 277/375 (73%), Positives = 318/375 (84%), Gaps = 1/375 (0%)
Query: 17 EEEEAASLSVVSWKAGVNDGCCR-IGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINK 75
E+EE + S V DG R + +DSLLPGL DD A+NC A+ SDYASL +N
Sbjct: 2 EDEEVSYSSSVDLIERTLDGSQRRLISTDSLLPGLNDDAAMNCFAYVRRSDYASLSCVNS 61
Query: 76 RFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHAD 135
RF+K I+SG L LRK++GIVE+WVYLVCD + WEAFDP + KWMALPK+PCDECFNHAD
Sbjct: 62 RFNKQIRSGALAELRKKIGIVEYWVYLVCDLKEWEAFDPDRNKWMALPKMPCDECFNHAD 121
Query: 136 KESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGS 195
KESLAVGSELLVFGRE +DFAIWKY+ SW+KC GMN PRCLFGSGSLGSIAI+AGGS
Sbjct: 122 KESLAVGSELLVFGREFYDFAIWKYAFFSHSWVKCRGMNQPRCLFGSGSLGSIAIVAGGS 181
Query: 196 DKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEE 255
DK G+VLKSAELYDS+ GRWE LP MH PRR CSGFFM+ KFYVIGGMSSPTVSLTCGEE
Sbjct: 182 DKKGNVLKSAELYDSSKGRWETLPDMHVPRRSCSGFFMNEKFYVIGGMSSPTVSLTCGEE 241
Query: 256 FDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGR 315
++L+ RKWRKIEGMYP VN+ AQAPPLVAVV+N+LYAVE+LTNMV KY+K+ NTW+VLGR
Sbjct: 242 YNLKKRKWRKIEGMYPYVNQGAQAPPLVAVVENELYAVEHLTNMVMKYEKVGNTWNVLGR 301
Query: 316 LPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEK 375
LPVRAD SNGWGLAFKACG +L+VVGGQRGPEGE++VL+SWCPKSGVNNG LDWK++ K
Sbjct: 302 LPVRADSSNGWGLAFKACGKKLVVVGGQRGPEGESIVLSSWCPKSGVNNGILDWKIVGVK 361
Query: 376 QHVGVFVYNCAVLGC 390
+HVGVFVYNCAV+GC
Sbjct: 362 EHVGVFVYNCAVMGC 376
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 390 | ||||||
| TAIR|locus:2175143 | 393 | AT5G60570 "AT5G60570" [Arabido | 0.948 | 0.941 | 0.708 | 1.2e-147 | |
| TAIR|locus:2202765 | 421 | AT1G26930 "AT1G26930" [Arabido | 0.874 | 0.809 | 0.479 | 2.3e-87 | |
| TAIR|locus:2056705 | 467 | AT2G02870 "AT2G02870" [Arabido | 0.905 | 0.755 | 0.465 | 1.7e-84 | |
| TAIR|locus:2012547 | 441 | AT1G14330 "AT1G14330" [Arabido | 0.882 | 0.780 | 0.481 | 5.6e-84 | |
| TAIR|locus:2019215 | 451 | AT1G74510 "AT1G74510" [Arabido | 0.864 | 0.747 | 0.450 | 6e-80 | |
| TAIR|locus:2095138 | 422 | AT3G27150 "AT3G27150" [Arabido | 0.869 | 0.803 | 0.362 | 2.3e-55 | |
| TAIR|locus:2168738 | 415 | AT5G40680 "AT5G40680" [Arabido | 0.892 | 0.838 | 0.324 | 8.5e-49 | |
| TAIR|locus:2030601 | 475 | AT1G22040 "AT1G22040" [Arabido | 0.248 | 0.204 | 0.305 | 2.4e-17 | |
| TAIR|locus:2008773 | 376 | AT1G67480 "AT1G67480" [Arabido | 0.743 | 0.771 | 0.234 | 4.3e-17 | |
| TAIR|locus:2035696 | 434 | AT1G55270 "AT1G55270" [Arabido | 0.735 | 0.661 | 0.254 | 3.3e-16 |
| TAIR|locus:2175143 AT5G60570 "AT5G60570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1442 (512.7 bits), Expect = 1.2e-147, P = 1.2e-147
Identities = 265/374 (70%), Positives = 306/374 (81%)
Query: 21 AASLSVV-SWKAGV--NDGC-CRIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKR 76
+AS SVV + + G NDG R+G SDS+LPGL+DDVALNCLA+ SDY SL +NK+
Sbjct: 20 SASASVVVNLRVGEEDNDGHRLRLGSSDSVLPGLIDDVALNCLAWVPRSDYPSLSCVNKK 79
Query: 77 FHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADK 136
++KLI SG+L+ LRK+LGIVE+ V++VCDPRGW F PMKKKWM LPK+PCDECFNHADK
Sbjct: 80 YNKLINSGHLFALRKELGIVEYLVFMVCDPRGWLMFSPMKKKWMVLPKMPCDECFNHADK 139
Query: 137 ESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFXXXXXXXXXXXXXXXD 196
ESLAV ELLVFGRELF FAIWKYSL R W+KCEGM+ PRCLF D
Sbjct: 140 ESLAVDDELLVFGRELFQFAIWKYSLRSRCWVKCEGMHRPRCLFASGSLGGIAIVAGGTD 199
Query: 197 KNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEF 256
NG++L SAELYDS++GRWEMLP+MHSPRRLCSGFFMDGKFYVIGGMSSP VS+T GEEF
Sbjct: 200 MNGNILASAELYDSSSGRWEMLPNMHSPRRLCSGFFMDGKFYVIGGMSSPNVSVTFGEEF 259
Query: 257 DLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRL 316
DLETRKWRKIEGMYPNVNRAAQAPPLV VV+N+L+ +EY TNMVKKYDK+KN W+V+GRL
Sbjct: 260 DLETRKWRKIEGMYPNVNRAAQAPPLVVVVNNELFTLEYSTNMVKKYDKVKNKWEVMGRL 319
Query: 317 PVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQ 376
P D SNGWGLAFK CG++LLV GQRGP GE +V+NSWCPKSG +G LDWKVL K+
Sbjct: 320 PPMVDSSNGWGLAFKPCGDQLLVFCGQRGPHGEGIVVNSWCPKSGAKDGNLDWKVLGVKE 379
Query: 377 HVGVFVYNCAVLGC 390
+VGVFVYNCAV+GC
Sbjct: 380 NVGVFVYNCAVMGC 393
|
|
| TAIR|locus:2202765 AT1G26930 "AT1G26930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
Identities = 173/361 (47%), Positives = 232/361 (64%)
Query: 43 SDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYL 102
S +L+PG+ D +L+CL +DY S+ +N+ LI+SG +Y LR+ G +EHWVY
Sbjct: 68 SGTLIPGMNRDDSLSCLIRCSRADYCSIASVNRSLRSLIRSGEIYRLRRLQGTLEHWVYF 127
Query: 103 VCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSL 162
C WEAFDP K+WM LP +P +ECF +ADKESLAVG++LLVFG E+ + I++YSL
Sbjct: 128 SCHLNEWEAFDPRSKRWMHLPSMPQNECFRYADKESLAVGTDLLVFGWEVSSYVIYRYSL 187
Query: 163 VFRSWMKCEGMNHPRCLFXXXXXXXXXXXXXXXDKNGHVLKSAELYDSTTGRWEMLPSMH 222
+ SW + MN PRCLF D +G +L +AELY+ W +LP M+
Sbjct: 188 LTNSWSTAKSMNMPRCLFGSASYGEIAVLAGGCDSSGRILDTAELYNYEDQTWLVLPGMN 247
Query: 223 SPRRLCSGFFMDGKFYVIGGM-----SSPTVSLTCGEEFDLETRKWRKIEGMYP------ 271
R++CSG FMDGKFYVIGG+ + P V LTCGEEFDL+TRKW +I M P
Sbjct: 248 KRRKMCSGVFMDGKFYVIGGIGVGEENEPKV-LTCGEEFDLKTRKWTEIPEMSPPRSNQG 306
Query: 272 -NVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAF 330
++ AA APPLVAVV++QLYA ++ V++YDK K W+ +G LP +A NGWGLAF
Sbjct: 307 NGMSAAAMAPPLVAVVNDQLYAADHAGMAVRRYDKEKRVWNKVGNLPEQAGSMNGWGLAF 366
Query: 331 KACGNELLVVGGQRGPEGENVV-LNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVLG 389
+ACG+ ++V+GG + P GE + LNSW P V T +W +L +KQ V FVYNCAV+
Sbjct: 367 RACGDRIIVIGGPKAP-GEGFIELNSWVPS--VT--TPEWHLLGKKQSVN-FVYNCAVMS 420
Query: 390 C 390
C
Sbjct: 421 C 421
|
|
| TAIR|locus:2056705 AT2G02870 "AT2G02870" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 171/367 (46%), Positives = 224/367 (61%)
Query: 34 NDGCCRIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQL 93
ND S SL+ + D +++CL SDY S+ +N+ F L+KSG +Y LR+Q
Sbjct: 105 NDNGGDSSDSHSLINEIGRDNSIDCLIRCSRSDYGSIASLNRNFRSLVKSGEIYRLRRQN 164
Query: 94 GIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELF 153
G VEHWVY C W AFDP++++WM LP +P F ADKESLAVG++LLV G++ F
Sbjct: 165 GFVEHWVYFSCQLLEWVAFDPVERRWMQLPTMPSSVTFMCADKESLAVGTDLLVLGKDDF 224
Query: 154 D-FAIWKYSLVFRSWMKCEGMNHPRCLFXXXXXXXXXXXXXXXDKNGHVLKSAELYDSTT 212
I++YSL+ SW MN PRCLF D G +L AE+Y+S
Sbjct: 225 SSHVIYRYSLLTNSWSSGMKMNSPRCLFGSASLGEIAIFAGGCDSQGKILDFAEMYNSEL 284
Query: 213 GRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMS-SPTVSLTCGEEFDLETRKWRKIEGMYP 271
W LP M+ PR++CSG FMDGKFYVIGG+ + + LTCGEE+DLET+KW +I + P
Sbjct: 285 QTWITLPRMNKPRKMCSGVFMDGKFYVIGGIGGADSKGLTCGEEYDLETKKWTQIPDLSP 344
Query: 272 NVNRA--------AQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLS 323
+RA A+APPLVAVV+NQLYA ++ V+KYDK W +GRLP RA
Sbjct: 345 PRSRADQADMSPAAEAPPLVAVVNNQLYAADHADMEVRKYDKENKKWLTVGRLPERAGSV 404
Query: 324 NGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVY 383
NGWGLAF+ACG L+V+GG + G + LNSW P G G W +L +++H FVY
Sbjct: 405 NGWGLAFRACGERLIVIGGPKCSGGGFIELNSWIPSDG---GPPQWTLL-DRKHSPTFVY 460
Query: 384 NCAVLGC 390
NCAV+GC
Sbjct: 461 NCAVMGC 467
|
|
| TAIR|locus:2012547 AT1G14330 "AT1G14330" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
Identities = 170/353 (48%), Positives = 220/353 (62%)
Query: 44 DSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLV 103
DSL+ + D +++CL S Y S+ +N+ F L+K+G +Y LR+Q IVEHWVY
Sbjct: 92 DSLINDIGRDNSISCLIRCSRSGYGSIASLNRSFRSLVKTGEIYRLRRQNQIVEHWVYFS 151
Query: 104 CDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFD-FAIWKYSL 162
C W AF+P +++WM LP +P F ADKESLAVG++LLV G++ + I++YSL
Sbjct: 152 CQLLEWVAFNPFERRWMNLPTMPSGVTFMCADKESLAVGTDLLVLGKDDYSSHVIYRYSL 211
Query: 163 VFRSWMKCEGMNHPRCLFXXXXXXXXXXXXXXXDKNGHVLKSAELYDSTTGRWEMLPSMH 222
+ SW MN PRCLF D G + SAE+Y+S W LP M+
Sbjct: 212 LTNSWSSGMRMNSPRCLFGSASLGEIAIFAGGFDSFGKISDSAEMYNSELQTWTTLPKMN 271
Query: 223 SPRRLCSGFFMDGKFYVIGGMS-SPTVSLTCGEEFDLETRKWRKIEGMYPNVNR----AA 277
PR++CSG FMDGKFYVIGG+ + + LTCGEEFDLET+KW +I M P +R AA
Sbjct: 272 KPRKMCSGVFMDGKFYVIGGIGGNDSKVLTCGEEFDLETKKWTEIPEMSPPRSREMPAAA 331
Query: 278 QAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNEL 337
+APPLVAVV+N+LYA ++ V+KYDK W LGRLP RAD NGWGLAF+ACG L
Sbjct: 332 EAPPLVAVVNNELYAADHADMEVRKYDKESKKWFTLGRLPERADSVNGWGLAFRACGERL 391
Query: 338 LVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVLGC 390
+V+GG R G + LNSW P S + L W +L K H FVYNCAV+GC
Sbjct: 392 IVIGGPRSSGGGYIELNSWIPSSD-RSPPL-WTLLGRK-HSSNFVYNCAVMGC 441
|
|
| TAIR|locus:2019215 AT1G74510 "AT1G74510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
Identities = 161/357 (45%), Positives = 209/357 (58%)
Query: 50 LVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGW 109
L + LNCLA SD+ S+ N+ F LIK LY LR+ GIVEHW+Y C W
Sbjct: 99 LDQNALLNCLAHCSLSDFGSIASTNRTFRSLIKDSELYRLRRAKGIVEHWIYFSCRLLEW 158
Query: 110 EAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMK 169
EA+DP +W+ +PK+ +ECF +DKESLAVG+ELLVFG+E+ I++YS++ +W
Sbjct: 159 EAYDPNGDRWLRVPKMTFNECFMCSDKESLAVGTELLVFGKEIMSHVIYRYSILTNTWTS 218
Query: 170 CEGMNHPRCLFXXXXXXXXXXXXXXXDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCS 229
MN PRCLF D G +L SAELY+S TG W ++PSM+ R++CS
Sbjct: 219 GMQMNVPRCLFGSASLGEIAVIAGGCDPRGRILSSAELYNSETGEWTVIPSMNKARKMCS 278
Query: 230 GFFMDGKFYVIGGMSSPTVS-LTCGEEFDLETRKWRKIEGMYPN---------------V 273
FMDG FY IGG+ L CGE +DL+ + W I M P
Sbjct: 279 SVFMDGNFYCIGGIGEGNSKMLLCGEVYDLKKKTWTLIPNMLPERSSGGGGDQAKEIAAA 338
Query: 274 NRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC 333
A++APPLVAVV ++LYA Y VKKYDK N W+ +G LP RA NGWG+AF+AC
Sbjct: 339 TAASEAPPLVAVVKDELYAANYAQQEVKKYDKRLNVWNKVGNLPERASSMNGWGMAFRAC 398
Query: 334 GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVLGC 390
G++L+VVGG R G + +N+ P G L W+VLA K G FVYNCAV+GC
Sbjct: 399 GDQLVVVGGPRAIGGGFIEINACVPSEGTQ---LHWRVLASKPS-GNFVYNCAVMGC 451
|
|
| TAIR|locus:2095138 AT3G27150 "AT3G27150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 128/353 (36%), Positives = 190/353 (53%)
Query: 47 LPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCD- 105
+P LV ++ + LA +Y L +NK F +L+KS ++ +R++ G+VE V+++
Sbjct: 71 VPQLVYELEVEILARVPRFEYWKLKLLNKGFSRLLKSDEIFKVRRERGVVEPSVFMLSSG 130
Query: 106 PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFR 165
W FD LP++P D CF H DKESL G+ L+V G+E A+W+Y L
Sbjct: 131 DTCWTMFDKGFGNCQKLPELPSDICFLHGDKESLCAGTHLIVTGKEEKSIALWRYELETS 190
Query: 166 SWMKCEGMNHPRCLFXXXX--XXXXXXXXXXXDKNG--HVLKSAELYDSTTGRWEMLPSM 221
W K M PR LF + NG V+ S E YDS T W +L M
Sbjct: 191 KWFKGPAMITPRILFASATCGTVVFVAGGLKIEGNGTMEVVDSVEKYDSKTKTWTLLRGM 250
Query: 222 HSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVN-RAAQAP 280
H R+ CSG ++ GKFYV+GG +LTCGE +D +T W I + +++ + Q+P
Sbjct: 251 HKRRKFCSGCYLRGKFYVLGGRDENGQNLTCGESYDEKTNTWELIPDILKDMSFSSVQSP 310
Query: 281 PLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVV 340
PL+AVV + LY++E N ++ YD N+W LG +PVRA + GWG+AFK+ G++LLV+
Sbjct: 311 PLIAVVGDDLYSLETSANELRVYDANANSWKKLGDVPVRAKSNGGWGVAFKSLGDKLLVI 370
Query: 341 GGQRGPE-GENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGV----FVYNCAVL 388
G GP E + + + P + N L W+ K+ GV F+ NC V+
Sbjct: 371 GASAGPSRAETMSVYTSRPSANPAN-KLYWE--ESKRCCGVRFNHFILNCCVM 420
|
|
| TAIR|locus:2168738 AT5G40680 "AT5G40680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 116/358 (32%), Positives = 184/358 (51%)
Query: 40 IGPSDSL--LPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVE 97
+ P D+ LP L+ D+ + + Y L +NK+F +L++S ++ +R++ G+V+
Sbjct: 57 LAPQDAHNGLPKLMFDLEVEIFSRLSCFQYWKLNLLNKQFSQLLQSREIFKVRRERGLVQ 116
Query: 98 HWVYLVCDPRG-WEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFA 156
+V + W FD K + LP+IP D CF + DKE++ G+ L+V GRE
Sbjct: 117 PYVLMFSSGETCWVMFDKGFKNFRQLPEIPSDFCFFYGDKETITAGTHLIVIGREEKRIV 176
Query: 157 IWKYSLVFRSWMKCEGMNHPRCLFXXXXXXXXXXXXXX--XDKNG--HVLKSAELYDSTT 212
+W+Y L W+ M PR ++ +NG V+ AE Y+S T
Sbjct: 177 VWRYELEVNKWINDTEMITPRVMYASASRGTDAFFAGGIKTSENGGPDVVNVAERYNSDT 236
Query: 213 GRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPN 272
W+ + +MH R+ SG F+ GKFY +GG V LTCGE +D T W+ I M
Sbjct: 237 KTWKAMKAMHKRRKFSSGCFLRGKFYALGGRDENDVYLTCGESYDELTDSWKLIPDMLKG 296
Query: 273 VN-RAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK 331
+ Q+PPL+AVV + LY +E N + YD N W LG +PV+A+ + GWG+AFK
Sbjct: 297 MTFMNPQSPPLIAVVKDNLYLLETWLNELWVYDINANVWKNLGVVPVKANAALGWGVAFK 356
Query: 332 ACGNELLVVGGQRGPEGENVV-LNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVL 388
+ G+ +LV+G +N + + + CP V T + + + +G F+ NC V+
Sbjct: 357 SVGDRILVIGASVTKSWDNKMSVYTCCPFPKVEKITWE-ETSCDCVQLGHFIRNCCVM 413
|
|
| TAIR|locus:2030601 AT1G22040 "AT1G22040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 149 (57.5 bits), Expect = 2.4e-17, Sum P(4) = 2.4e-17
Identities = 33/108 (30%), Positives = 57/108 (52%)
Query: 37 CCRIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIV 96
CCR L+P L D++++ LA Y+S+ +++R+ + + +Y LRK+LG
Sbjct: 40 CCR------LIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRT 93
Query: 97 EHWVYLVC----DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA 140
E W+Y++ D W A DP+ KW LP +P + ++SL+
Sbjct: 94 EEWLYVLTKGHEDKLLWYALDPVSTKWQRLPPMPV-VVYEEESRKSLS 140
|
|
| TAIR|locus:2008773 AT1G67480 "AT1G67480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 229 (85.7 bits), Expect = 4.3e-17, P = 4.3e-17
Identities = 73/311 (23%), Positives = 134/311 (43%)
Query: 44 DSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLV 103
D L+PGL DDVA CLA + + S+ + K++ +++S +R+ G++E W+Y++
Sbjct: 37 DPLIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVL 96
Query: 104 CDPRG-----WEAFDPMKKKWMALPKIP--CDECFNHA--DKESLAVGSELLVFGRELFD 154
G WE D + +K +LP +P F D + L + ++ G +
Sbjct: 97 TMNAGGKDNRWEVMDCLGQKLSSLPPMPGPAKTGFKVVVVDGKLLVIAGCCMINGSLVAS 156
Query: 155 FAIWKYSLVFRSWMKCEGMNHPRCLFXXXXXXXXXXXXXXXDKNGHVLKSAELYDSTTGR 214
+++Y SW + + R F +G L SAE+YD T
Sbjct: 157 ADVYQYDTCLNSWSRLADLEVARYDFACAEVNGHVYVVGGHGVDGESLSSAEVYDPETCT 216
Query: 215 WEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLT-CGEEFDLETRKWRKIEGMYPNV 273
W + S+ PR C +GK YV+GG S+ T+ + + ++ + W + V
Sbjct: 217 WTFIESLRRPRWGCFASAFNGKLYVMGGRSNFTIGNSKLLDVYNTQCGSWHGSKNGLTMV 276
Query: 274 NRAAQAPPLVAVVDNQLYAVEYLTNM-VKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA 332
+ V +L+ +++ + + ++ TW+V+ LP+ S+ G F
Sbjct: 277 TAHVE-------VGKKLFCIDWKNHRKMSVFNAEDETWEVVA-LPLSG--SSRAGFQFGK 326
Query: 333 CGNELLVVGGQ 343
+LL+ Q
Sbjct: 327 LSGKLLLFSSQ 337
|
|
| TAIR|locus:2035696 AT1G55270 "AT1G55270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 81/318 (25%), Positives = 137/318 (43%)
Query: 39 RIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEH 98
RI P LLPGL DD+A+ CL +++ L + KR+++L + Y RK LG+ E
Sbjct: 73 RIQPP--LLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEE 130
Query: 99 WVYLVCDPR----GWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--GSELLVFG-RE 151
WVY+ R W FDP+ + W LP +P + ++ A AV G L +FG ++
Sbjct: 131 WVYVFKRDRDGKISWNTFDPISQLWQPLPPVPRE--YSEAVGFGCAVLSGCHLYLFGGKD 188
Query: 152 LFDFAIWK---YSLVFRSWMKCEGMNHPRCLFXXXXXXXXXXXXXXXDKN-GHVLKSAEL 207
++ + Y+ W + M R F + L+SAE+
Sbjct: 189 PLRGSMRRVIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGECEGIQRTLRSAEV 248
Query: 208 YDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKI- 266
YD RW + M + G D K++ + G+ S L E +D E W +
Sbjct: 249 YDPNKNRWSFIADMSTAMVPLIGVVYDKKWF-LKGLGSH--QLVMSEAYDPEVNSWSPVS 305
Query: 267 EGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNM-VKKYDKLKNTWDVLGRLPVRADLSNG 325
+GM A P ++ + +LY ++ ++ +D+ ++W+ + +A L N
Sbjct: 306 DGMV-----AGWRNPCTSL-NGRLYGLDCRDGCKLRVFDESTDSWNKF--MDSKAHLGNS 357
Query: 326 WGL---AFKACGNELLVV 340
L A N+L ++
Sbjct: 358 KSLEAAALVPLHNKLCII 375
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FKJ0 | FK132_ARATH | No assigned EC number | 0.7541 | 0.9153 | 0.9083 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 390 | |||
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 9e-16 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 5e-14 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 4e-07 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 1e-05 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 3e-05 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 4e-05 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 1e-04 | |
| PRK14131 | 376 | PRK14131, PRK14131, N-acetylneuraminic acid mutaro | 2e-04 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 8e-04 | |
| PHA02790 | 480 | PHA02790, PHA02790, Kelch-like protein; Provisiona | 8e-04 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 0.002 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 0.004 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 9e-16
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 18/155 (11%)
Query: 174 NHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233
H FGS L ++ GG +KN + S YD+ T W +P + PR+
Sbjct: 282 IHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF 341
Query: 234 DGKFYVIGGM--SSPTVSLTCGEEFDLETRKWRKIEGM-YPNVNRAAQAPPLVAVVDNQL 290
+ + YVIGG+ S ++ E + KWR+ + +P N P V V+N +
Sbjct: 342 NNRIYVIGGIYNSISLNTV---ESWKPGESKWREEPPLIFPRYN------PCVVNVNNLI 392
Query: 291 YAV------EYLTNMVKKYDKLKNTWDVLGRLPVR 319
Y + + L V+ + N W LP+
Sbjct: 393 YVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS 427
|
Length = 534 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 5e-14
Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 21/218 (9%)
Query: 111 AFDPMKKKWMALPKI--PCDECFNHADKESL-AVGSELLVFGRELFDFAIWKYSLVFRSW 167
++D K W +P++ P + +G L WK W
Sbjct: 315 SYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIY--NSISLNTVESWKPGE--SKW 370
Query: 168 MKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRL 227
+ + PR ++ ++ + GG KN +LK+ E + T +W +
Sbjct: 371 REEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG 430
Query: 228 CSGFFMDGKFYVIGGMSSPTV--SLTCGEEFDLETRKWRKIEGM-YPNVNRAAQAPPLVA 284
+ DGK YVIGG+S E ++ T KW ++ + +P +N +
Sbjct: 431 GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN------ASLC 484
Query: 285 VVDNQLYAV-----EYLTNMVKKYDKLKNTWDVLGRLP 317
+ +N++Y V EY N ++ YD NTW + + P
Sbjct: 485 IFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFP 522
|
Length = 534 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-07
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 190 IIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDG 235
+ GG D G LKS E+YD T +W LPSM +PR ++G
Sbjct: 3 YVVGGFD-GGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
|
Length = 47 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-05
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 176 PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221
PR G LG + GG D G L S E+YD T W LPSM
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYD-GGQSLSSVEVYDPETNTWSKLPSM 45
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 3e-05
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 224 PRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGM 269
PR + GK YVIGG SL+ E +D ET W K+ M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQ-SLSSVEVYDPETNTWSKLPSM 45
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 4e-05
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 176 PRCLFGSGSLGS-IAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221
PR S S+G + GG +++G VL ++D +T W LPS+
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSL 47
|
Length = 49 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 1e-04
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 176 PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPR 225
PR + S+G + GG +YD TG WE LP + +PR
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
|
Length = 50 |
| >gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 36/166 (21%), Positives = 53/166 (31%), Gaps = 35/166 (21%)
Query: 193 GGSDKNGH-----VLKSAELYDSTTGRWEMLPSMHSPRRLC--SGFFMDG-KFYVIGGMS 244
GG K V YD T W+ L + SP L + K Y+ GG++
Sbjct: 91 GGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT-RSPVGLAGHVAVSLHNGKAYITGGVN 149
Query: 245 SPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAA-QAPPLVAVVD---NQLYAVEYLTNMV 300
FD G + ++ A P + D ++ + V
Sbjct: 150 KNI--------FD----------GYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEV 191
Query: 301 KKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGP 346
YD N W G P G A GN+L ++ G+ P
Sbjct: 192 LSYDPSTNQWKNAGESP----FLGTAGSAVVIKGNKLWLINGEIKP 233
|
Length = 376 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 8e-04
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 190 IIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF 232
+ GG G L +YD T WE L + PR +
Sbjct: 5 YVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATV 47
|
Length = 48 |
| >gnl|CDD|165153 PHA02790, PHA02790, Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 8e-04
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 182 SGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIG 241
S +G + + GG N + +A + + W +P M+SPR SG + K YV+G
Sbjct: 267 STHVGEVVYLIGGW-MNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVG 325
Query: 242 GMSSPTVSLTCGEEFDLETRKWRKIEGMY-PNVNRAAQAPPLVAVVDNQLYAV 293
G+ +PT + F + W + + P N P VA ++N +Y +
Sbjct: 326 GLPNPT---SVERWFHGDA-AWVNMPSLLKPRCN------PAVASINNVIYVI 368
|
Length = 480 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 35.9 bits (83), Expect = 0.002
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 224 PRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGM 269
PR S + GK YV GG S+ + + +D ET W K+ +
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPL 46
|
Length = 50 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 34.9 bits (81), Expect = 0.004
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 226 RLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKI 266
R DG+ Y+ GG + L+ FDL T W ++
Sbjct: 2 RAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRL 44
|
Length = 49 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 390 | |||
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 100.0 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 100.0 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 100.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 100.0 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 100.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 100.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 100.0 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 100.0 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 99.98 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 99.94 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 99.93 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 99.91 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 99.9 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 99.89 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 99.87 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.79 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.66 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 99.29 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 99.17 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 99.13 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 99.09 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 99.08 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 99.05 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.91 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.88 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.88 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.86 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.84 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 98.77 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.74 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 98.73 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.57 | |
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 98.56 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 98.55 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 98.54 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 98.46 | |
| PLN02772 | 398 | guanylate kinase | 98.45 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.44 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.34 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.28 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.27 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 98.23 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 98.2 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.2 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 98.16 | |
| PLN02772 | 398 | guanylate kinase | 98.06 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.04 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.87 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.75 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.75 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 97.59 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 97.51 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.44 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 97.18 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 97.1 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 96.99 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 96.73 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.71 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.44 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 96.41 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 96.35 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.24 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 96.21 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 96.12 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.12 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 96.0 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 95.97 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 95.73 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 95.6 | |
| PF12217 | 367 | End_beta_propel: Catalytic beta propeller domain o | 95.43 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 95.23 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 95.2 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 95.19 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 95.16 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 95.14 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.05 | |
| PF07734 | 164 | FBA_1: F-box associated; InterPro: IPR006527 This | 95.02 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 94.99 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 94.85 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 94.81 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 94.32 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 94.21 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 94.21 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 94.16 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 94.16 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 93.51 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 93.49 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.47 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 93.34 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 93.31 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 93.13 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 93.04 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 92.88 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 92.69 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 92.44 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 91.95 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 91.76 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 91.66 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 91.23 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 91.09 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 90.81 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 90.67 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 90.56 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 90.5 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 90.23 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 89.94 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 89.69 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 89.62 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 89.56 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 88.87 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 88.68 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 88.64 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 88.46 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 87.76 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 87.08 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 86.92 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 86.77 | |
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 86.57 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 86.54 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 86.18 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 86.16 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 85.62 | |
| PTZ00421 | 493 | coronin; Provisional | 85.57 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 85.45 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 84.77 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 84.45 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 84.38 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 84.25 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 83.32 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 82.62 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 82.06 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 81.64 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 80.76 |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=362.70 Aligned_cols=350 Identities=24% Similarity=0.330 Sum_probs=273.3
Q ss_pred HHHHHh-hcceeeccccccCCCCCCCCCCCCCCCCChHHHHHHHhhhcccc--chhhhHhhc--HHHHHHhhcCC-chhh
Q 016421 16 KEEEEA-ASLSVVSWKAGVNDGCCRIGPSDSLLPGLVDDVALNCLAFACTS--DYASLLFIN--KRFHKLIKSGY-LYGL 89 (390)
Q Consensus 16 ~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~LP~dl~~~iL~rlp~~--~l~~~~~V~--k~w~~l~~s~~-~~~~ 89 (390)
+|++.+ +.+.+...+......--..-.....+|.||...+.+++...+.- +......+. +++..+-.... ....
T Consensus 196 ~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~ 275 (571)
T KOG4441|consen 196 SEEEVFEAAMRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSP 275 (571)
T ss_pred CHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCC
Confidence 444434 55555555544321111122233456899999998888887721 111111111 22322221111 2222
Q ss_pred hhhcC-ccccEEEEEeC-------CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc----cCCeE
Q 016421 90 RKQLG-IVEHWVYLVCD-------PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL----FDFAI 157 (390)
Q Consensus 90 r~~~~-~~~~~l~~~~~-------~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~----~~~~~ 157 (390)
+.+.. .....|+++|| ...+.+|||.++.|..+++||.++.. .++++.++.||++||.+ ..+.+
T Consensus 276 ~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~----~~~~~~~~~lYv~GG~~~~~~~l~~v 351 (571)
T KOG4441|consen 276 RTRPRRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCR----VGVAVLNGKLYVVGGYDSGSDRLSSV 351 (571)
T ss_pred CcccCcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccccc----ccEEEECCEEEEEccccCCCcccceE
Confidence 32222 34678888886 35688999999999999999987652 45788899999999987 34789
Q ss_pred EEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEE
Q 016421 158 WKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKF 237 (390)
Q Consensus 158 ~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~i 237 (390)
++|||.+++|..+++|+.+|..+++++++|+||++||.++.. .++++++|||.+++|..+++|+.+|+++++++++|+|
T Consensus 352 e~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 352 ERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKL 430 (571)
T ss_pred EEecCCCCceeccCCccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccccCCCCcceeeeEEEEECCEE
Confidence 999999999999999999999999999999999999999654 6899999999999999999999999999999999999
Q ss_pred EEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----CCeEEEEeCCCCceEE
Q 016421 238 YVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-----TNMVKKYDKLKNTWDV 312 (390)
Q Consensus 238 yv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-----~~~v~~yd~~~~~W~~ 312 (390)
|++||.++....++++++|||.+++|+.+++|+. .|.++++++++++||++||. ...+++|||++++|+.
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-----~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-----RRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCccc-----ccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 9999998876689999999999999999999999 55666799999999999984 3569999999999999
Q ss_pred ccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccCccCeEEeeeeee
Q 016421 313 LGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVL 388 (390)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~ 388 (390)
+++|+.++.. +++++++++||++||+++.. ....|.+|||++ ++|+.... |...+...+|+++
T Consensus 506 v~~m~~~rs~-----~g~~~~~~~ly~vGG~~~~~-~l~~ve~ydp~~------d~W~~~~~-~~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 506 VAPMTSPRSA-----VGVVVLGGKLYAVGGFDGNN-NLNTVECYDPET------DTWTEVTE-PESGRGGAGVAVI 568 (571)
T ss_pred cccCcccccc-----ccEEEECCEEEEEecccCcc-ccceeEEcCCCC------CceeeCCC-ccccccCcceEEe
Confidence 9999887653 56788999999999987654 456799999999 89999999 6777777777665
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=338.28 Aligned_cols=243 Identities=16% Similarity=0.299 Sum_probs=211.0
Q ss_pred eeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc----cCCeEEEEECCCCcEeecCCCCCCCcceeee
Q 016421 108 GWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL----FDFAIWKYSLVFRSWMKCEGMNHPRCLFGSG 183 (390)
Q Consensus 108 ~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~----~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~ 183 (390)
.+++|||.+++|..+++||.++.. +++++.++.||++||.. ..+.+++|||.+++|..+++||.+|..++++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~----~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN----YASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc----eEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE
Confidence 578999999999999999987642 45678899999999964 2467999999999999999999999999999
Q ss_pred eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCC----------------
Q 016421 184 SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPT---------------- 247 (390)
Q Consensus 184 ~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~---------------- 247 (390)
+++++||++||.++.. ..+++++|||.+++|+.+++||.+|..+++++++|+||++||.+...
T Consensus 349 ~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 349 VIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred EECCEEEEECCcCCCC-CCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 9999999999986543 46889999999999999999999999999999999999999986421
Q ss_pred -ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCC------CeEEEEeCCC-CceEEccCCCcc
Q 016421 248 -VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT------NMVKKYDKLK-NTWDVLGRLPVR 319 (390)
Q Consensus 248 -~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~------~~v~~yd~~~-~~W~~v~~~~~~ 319 (390)
...+.+++|||.+++|+.+++|+. +|..+++++++|+||++||.. ..+++|||++ ++|+.+++||.+
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~-----~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~ 502 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWT-----GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR 502 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCc-----ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc
Confidence 125789999999999999999988 455667999999999999853 4589999999 899999999987
Q ss_pred ccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016421 320 ADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 320 ~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
+.. +++++++|+||++||.++. ..+++||+.+ ++|+.+.+.
T Consensus 503 r~~-----~~~~~~~~~iyv~Gg~~~~----~~~e~yd~~~------~~W~~~~~~ 543 (557)
T PHA02713 503 LSA-----LHTILHDNTIMMLHCYESY----MLQDTFNVYT------YEWNHICHQ 543 (557)
T ss_pred ccc-----ceeEEECCEEEEEeeecce----eehhhcCccc------ccccchhhh
Confidence 653 5678899999999998863 3689999999 899999876
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=311.22 Aligned_cols=231 Identities=26% Similarity=0.404 Sum_probs=205.1
Q ss_pred EeCCEEEEEccccc----CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcE
Q 016421 140 AVGSELLVFGRELF----DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRW 215 (390)
Q Consensus 140 ~~~~~iy~~Gg~~~----~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (390)
...+.||++||... ...+..|||.+++|..+.+||.+|..+++++++++||++||.+.....++++++||+.+++|
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce
Confidence 45678999999764 47889999999999999999999999999999999999999984334689999999999999
Q ss_pred EEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec
Q 016421 216 EMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY 295 (390)
Q Consensus 216 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg 295 (390)
..+++|..+|..+++++++|.||++||.++.. .++++++|||.+++|+.+++|+. .|.++++++++|+||++||
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va~m~~-----~r~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVAPMLT-----RRSGHGVAVLGGKLYIIGG 435 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccccCCCCc-----ceeeeEEEEECCEEEEEcC
Confidence 99999999999999999999999999999644 68899999999999999999998 5667789999999999998
Q ss_pred ------CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCce
Q 016421 296 ------LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDW 369 (390)
Q Consensus 296 ------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W 369 (390)
..+++++|||.+++|+.+++|+..+.. +++++++++||++||.++ ......|++|||.+ ++|
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-----~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~------~~W 503 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-----FGVAVLNGKIYVVGGFDG-TSALSSVERYDPET------NQW 503 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCccccccc-----ceEEEECCEEEEECCccC-CCccceEEEEcCCC------Cce
Confidence 557999999999999999999988753 568899999999999998 44556699999999 899
Q ss_pred EEecccCccCeEEeeeeee
Q 016421 370 KVLAEKQHVGVFVYNCAVL 388 (390)
Q Consensus 370 ~~~~~~p~~~~~~~~~~~~ 388 (390)
+.+.+|+..+..+..+++.
T Consensus 504 ~~v~~m~~~rs~~g~~~~~ 522 (571)
T KOG4441|consen 504 TMVAPMTSPRSAVGVVVLG 522 (571)
T ss_pred eEcccCccccccccEEEEC
Confidence 9999997777666666543
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=303.35 Aligned_cols=250 Identities=20% Similarity=0.247 Sum_probs=209.8
Q ss_pred eeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEccccc----CCeEEEEECCCCcEeecCCCCCCCcceeee
Q 016421 108 GWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELF----DFAIWKYSLVFRSWMKCEGMNHPRCLFGSG 183 (390)
Q Consensus 108 ~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~----~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~ 183 (390)
....|++..++|..++..+... .+++++.++.||++||... .++++.||+.+++|..++++|.+|..++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~ 339 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVY-----CFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT 339 (534)
T ss_pred eeeecchhhhhcccccCccccc-----cceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE
Confidence 4456888888898887655322 1346788999999999652 357899999999999999999999999999
Q ss_pred eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCce
Q 016421 184 SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 184 ~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
+++++||++||.... ...+++++||+.+++|+.+++||.+|..++++.++++||++||.......++.+++||+.+++|
T Consensus 340 ~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 340 VFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred EECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 999999999998743 3578899999999999999999999999999999999999999765444578899999999999
Q ss_pred EEccCCCCCCCCcCCCCCEEEEECCEEEEEecC--------CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCC
Q 016421 264 RKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL--------TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGN 335 (390)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~--------~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~ 335 (390)
+.++++|. ++..+++++.+++||++||. .+.+++||+.+++|+.++.++.++. +++++++++
T Consensus 419 ~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~-----~~~~~~~~~ 488 (534)
T PHA03098 419 SKGSPLPI-----SHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRI-----NASLCIFNN 488 (534)
T ss_pred eecCCCCc-----cccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccc-----cceEEEECC
Confidence 99999887 45566788999999999984 2459999999999999998886653 245677899
Q ss_pred EEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccCccCe
Q 016421 336 ELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGV 380 (390)
Q Consensus 336 ~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~ 380 (390)
+||++||..... ...++++||+++ ++|+.++.+|+...
T Consensus 489 ~iyv~GG~~~~~-~~~~v~~yd~~~------~~W~~~~~~p~~~~ 526 (534)
T PHA03098 489 KIYVVGGDKYEY-YINEIEVYDDKT------NTWTLFCKFPKVIG 526 (534)
T ss_pred EEEEEcCCcCCc-ccceeEEEeCCC------CEEEecCCCccccc
Confidence 999999987543 356799999999 89999998876543
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=297.88 Aligned_cols=219 Identities=17% Similarity=0.213 Sum_probs=187.3
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEEC
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMD 234 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 234 (390)
..+++|||.+++|..+++||.+|..+++++++++||++||........+++++||+.+++|..+++|+.+|..+++++++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 46799999999999999999999999999999999999998633335788999999999999999999999999999999
Q ss_pred CEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC------------------
Q 016421 235 GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL------------------ 296 (390)
Q Consensus 235 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~------------------ 296 (390)
|+||++||.++.. ..+++++||+.+++|+.+++||. ++..+++++++|+||++||.
T Consensus 352 g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp~-----~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 352 DTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMPI-----ALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred CEEEEECCcCCCC-CCceEEEEECCCCeEEECCCCCc-----ccccccEEEECCEEEEEeCCCccccccccccccccccc
Confidence 9999999986543 46789999999999999999998 45566788999999999984
Q ss_pred -----CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEE
Q 016421 297 -----TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKV 371 (390)
Q Consensus 297 -----~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~ 371 (390)
.+.+++|||++++|+.+++|+.++.. +++++++|+||++||.++.......+++|||+++ ++|+.
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-----~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~-----~~W~~ 495 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-----PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTY-----NGWEL 495 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCccccc-----CcEEEECCEEEEEeCCCCCCccceeEEEecCCCC-----CCeeE
Confidence 35799999999999999999887643 5678899999999998754444456899999872 38999
Q ss_pred ecccCccCeEEeeeeeec
Q 016421 372 LAEKQHVGVFVYNCAVLG 389 (390)
Q Consensus 372 ~~~~p~~~~~~~~~~~~~ 389 (390)
+++||..+..+..+++.|
T Consensus 496 ~~~m~~~r~~~~~~~~~~ 513 (557)
T PHA02713 496 ITTTESRLSALHTILHDN 513 (557)
T ss_pred ccccCcccccceeEEECC
Confidence 999988776666555544
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=277.25 Aligned_cols=242 Identities=21% Similarity=0.376 Sum_probs=190.8
Q ss_pred cCCCceeeCCC----CCCCcccCCCCeeEEEeCCEEEEEccccc-----CCeEEEEECCCCcEeecCCCC-CCC---cce
Q 016421 114 PMKKKWMALPK----IPCDECFNHADKESLAVGSELLVFGRELF-----DFAIWKYSLVFRSWMKCEGMN-HPR---CLF 180 (390)
Q Consensus 114 ~~~~~W~~l~~----~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~-----~~~~~~yd~~t~~W~~~~~~~-~~r---~~~ 180 (390)
+...+|.+++. +|.++. .++++++++.||++||... .+++++||+.+++|..+++++ .+| ..+
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~----~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~ 79 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRC----SHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV 79 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCC----cceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCce
Confidence 35677998876 565554 2456788999999999742 358999999999999987753 343 367
Q ss_pred eeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC-----CCCCcCceEEEECCEEEEEecccCCC-----ccC
Q 016421 181 GSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM-----HSPRRLCSGFFMDGKFYVIGGMSSPT-----VSL 250 (390)
Q Consensus 181 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~-----~~~ 250 (390)
++++++++||++||..... ..+++++||+.+++|+.+++| |.+|..|++++++++|||+||.+... ..+
T Consensus 80 ~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EEEEECCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCccc
Confidence 8889999999999986543 467899999999999999877 77899999999999999999986422 135
Q ss_pred ceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-------------CCeEEEEeCCCCceEEccC--
Q 016421 251 TCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-------------TNMVKKYDKLKNTWDVLGR-- 315 (390)
Q Consensus 251 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-------------~~~v~~yd~~~~~W~~v~~-- 315 (390)
+++++||+.+++|+.++++.... ..|..+.+++++++||++||. .+++++||+++++|++++.
T Consensus 159 ~~v~~yd~~~~~W~~l~~~~~~~--~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 159 RTIEAYNIADGKWVQLPDPGENF--EKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTG 236 (341)
T ss_pred ceEEEEECCCCeEeeCCCCCCCC--CCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccC
Confidence 68999999999999988764211 146667788999999999863 3679999999999999875
Q ss_pred -CCccccCCCcceeEEEEeCCEEEEEcCCCC--------CCCCeEEEeeecCCCCCCCCCCceEEec
Q 016421 316 -LPVRADLSNGWGLAFKACGNELLVVGGQRG--------PEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 316 -~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~--------~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
+|.++. ++++++++++|||+||... .....+++++||+++ ++|+.+.
T Consensus 237 ~~P~~r~-----~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~------~~W~~~~ 292 (341)
T PLN02153 237 AKPSARS-----VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET------LVWEKLG 292 (341)
T ss_pred CCCCCcc-----eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCc------cEEEecc
Confidence 344332 3677889999999999742 122345899999999 8999986
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=278.79 Aligned_cols=275 Identities=22% Similarity=0.281 Sum_probs=206.4
Q ss_pred HHHHhhcC-CchhhhhhcCc--cccEEEEEeCC--------CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEE
Q 016421 77 FHKLIKSG-YLYGLRKQLGI--VEHWVYLVCDP--------RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSEL 145 (390)
Q Consensus 77 w~~l~~s~-~~~~~r~~~~~--~~~~l~~~~~~--------~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~i 145 (390)
|..+-... ..+..|..+.. ..+.||++||. .+++.||+.+++|..+++++..+......+.+++++++|
T Consensus 9 W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~i 88 (341)
T PLN02153 9 WIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKL 88 (341)
T ss_pred EEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEE
Confidence 55444322 13334444333 37899999863 468999999999999887753222222234577889999
Q ss_pred EEEcccc---cCCeEEEEECCCCcEeecCCC-----CCCCcceeeeeeCCEEEEEeccCCCC-----CccceEEEEECCC
Q 016421 146 LVFGREL---FDFAIWKYSLVFRSWMKCEGM-----NHPRCLFGSGSLGSIAIIAGGSDKNG-----HVLKSAELYDSTT 212 (390)
Q Consensus 146 y~~Gg~~---~~~~~~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~~~lyv~GG~~~~~-----~~~~~~~~yd~~t 212 (390)
|++||.. ..+++++||+.+++|+.++++ |.+|..|++++++++|||+||..... ...+++++||+.+
T Consensus 89 yv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~ 168 (341)
T PLN02153 89 YIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIAD 168 (341)
T ss_pred EEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCC
Confidence 9999964 235899999999999998876 78899999999999999999986432 1356899999999
Q ss_pred CcEEEcCCCC---CCCcCceEEEECCEEEEEecccCC-------CccCceEEEEeCCCCceEEccCC---CCCCCCcCCC
Q 016421 213 GRWEMLPSMH---SPRRLCSGFFMDGKFYVIGGMSSP-------TVSLTCGEEFDLETRKWRKIEGM---YPNVNRAAQA 279 (390)
Q Consensus 213 ~~W~~~~~~~---~~r~~~~~~~~~~~iyv~GG~~~~-------~~~~~~v~~yd~~~~~W~~~~~~---~~~~~~~~~~ 279 (390)
++|+.++++. .+|..+++++++++||++||.... ....+.+++||+.+++|+++... |. +|.
T Consensus 169 ~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~-----~r~ 243 (341)
T PLN02153 169 GKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS-----ARS 243 (341)
T ss_pred CeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCC-----Ccc
Confidence 9999998764 678888889999999999986421 12357899999999999998753 33 456
Q ss_pred CCEEEEECCEEEEEecC--------------CCeEEEEeCCCCceEEccC-----CCccccCCCcceeEEEEeCCEEEEE
Q 016421 280 PPLVAVVDNQLYAVEYL--------------TNMVKKYDKLKNTWDVLGR-----LPVRADLSNGWGLAFKACGNELLVV 340 (390)
Q Consensus 280 ~~~~~~~~g~l~v~gg~--------------~~~v~~yd~~~~~W~~v~~-----~~~~~~~~~~~~~~~~~~~~~lyv~ 340 (390)
.+.+++++++||++||. .+++++||+++++|+.+.. +|..+. +.+++.+..+++|||+
T Consensus 244 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~---~~~~~~v~~~~~~~~~ 320 (341)
T PLN02153 244 VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWT---AYTTATVYGKNGLLMH 320 (341)
T ss_pred eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccc---cccccccCCcceEEEE
Confidence 66788999999999995 2489999999999999863 333222 2233433445689999
Q ss_pred cCCCCCCCCeEEEeeecCC
Q 016421 341 GGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 341 GG~~~~~~~~~~i~~y~~~ 359 (390)
||.........++++|+..
T Consensus 321 gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 321 GGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred cCcCCCCccccceEEEecc
Confidence 9998766667889999764
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=282.82 Aligned_cols=208 Identities=20% Similarity=0.287 Sum_probs=180.6
Q ss_pred EEeCCEEEEEcccc---cCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcE
Q 016421 139 LAVGSELLVFGREL---FDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRW 215 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~---~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (390)
+..++.||++||.. ..+.++.|||.+++|..+++|+.+|..+++++++++||++||.+. .++++.||+.+++|
T Consensus 268 ~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~----~~sve~ydp~~n~W 343 (480)
T PHA02790 268 THVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN----PTSVERWFHGDAAW 343 (480)
T ss_pred EEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC----CCceEEEECCCCeE
Confidence 45899999999964 336789999999999999999999999999999999999999753 25689999999999
Q ss_pred EEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec
Q 016421 216 EMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY 295 (390)
Q Consensus 216 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg 295 (390)
..+++||.+|..+++++++|+||++||.+.. .+.+++|||.+++|+.+++|+. +|..+++++++|+||++||
T Consensus 344 ~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~-----~r~~~~~~~~~~~IYv~GG 415 (480)
T PHA02790 344 VNMPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYY-----PHYKSCALVFGRRLFLVGR 415 (480)
T ss_pred EECCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCC-----ccccceEEEECCEEEEECC
Confidence 9999999999999999999999999998642 3678999999999999999987 4556678899999999997
Q ss_pred CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016421 296 LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 296 ~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
.+++||+++++|+.+++|+.++.. +++++++|+||++||.++.. ....+++|||++ ++|+...
T Consensus 416 ---~~e~ydp~~~~W~~~~~m~~~r~~-----~~~~v~~~~IYviGG~~~~~-~~~~ve~Yd~~~------~~W~~~~ 478 (480)
T PHA02790 416 ---NAEFYCESSNTWTLIDDPIYPRDN-----PELIIVDNKLLLIGGFYRGS-YIDTIEVYNNRT------YSWNIWD 478 (480)
T ss_pred ---ceEEecCCCCcEeEcCCCCCCccc-----cEEEEECCEEEEECCcCCCc-ccceEEEEECCC------CeEEecC
Confidence 378999999999999999876642 56778999999999987433 346799999999 8998754
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=271.25 Aligned_cols=253 Identities=18% Similarity=0.213 Sum_probs=195.1
Q ss_pred cccEEEEEeCC--CeeEEEec--CCCceeeCCCCCC-CcccCCCCeeEEEeCCEEEEEccccc---------CCeEEEEE
Q 016421 96 VEHWVYLVCDP--RGWEAFDP--MKKKWMALPKIPC-DECFNHADKESLAVGSELLVFGRELF---------DFAIWKYS 161 (390)
Q Consensus 96 ~~~~l~~~~~~--~~~~~~d~--~~~~W~~l~~~p~-~~~~~~~~~~~~~~~~~iy~~Gg~~~---------~~~~~~yd 161 (390)
..+.||++||. ..++.||+ .+++|..+++||. ++. .+.++++++.||++||... .+++++||
T Consensus 16 ~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~----~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd 91 (346)
T TIGR03547 16 IGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRN----QAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYD 91 (346)
T ss_pred ECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcc----cceEEEECCEEEEEeCCCCCCCCCcceecccEEEEE
Confidence 47889999874 67889996 5788999999984 443 2356788999999999642 35799999
Q ss_pred CCCCcEeecC-CCCCCCcceeee-eeCCEEEEEeccCCCC---------------------------------CccceEE
Q 016421 162 LVFRSWMKCE-GMNHPRCLFGSG-SLGSIAIIAGGSDKNG---------------------------------HVLKSAE 206 (390)
Q Consensus 162 ~~t~~W~~~~-~~~~~r~~~~~~-~~~~~lyv~GG~~~~~---------------------------------~~~~~~~ 206 (390)
|.+++|+.++ ++|..|..++++ +++++||++||.+... ...++++
T Consensus 92 ~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (346)
T TIGR03547 92 PKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVL 171 (346)
T ss_pred CCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEE
Confidence 9999999987 355566666555 6899999999976320 0137899
Q ss_pred EEECCCCcEEEcCCCCC-CCcCceEEEECCEEEEEecccCCCccCceEEEEe--CCCCceEEccCCCCCCCC--cCCCCC
Q 016421 207 LYDSTTGRWEMLPSMHS-PRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFD--LETRKWRKIEGMYPNVNR--AAQAPP 281 (390)
Q Consensus 207 ~yd~~t~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd--~~~~~W~~~~~~~~~~~~--~~~~~~ 281 (390)
+||+.+++|+.+++||. +|..++++.++++||++||..........++.|| +.+++|+.+++|+.++.. ..+..+
T Consensus 172 ~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~ 251 (346)
T TIGR03547 172 SYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGA 251 (346)
T ss_pred EEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEE
Confidence 99999999999999996 6888888899999999999865432334455554 577899999999875321 122344
Q ss_pred EEEEECCEEEEEecCC----------------------CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEE
Q 016421 282 LVAVVDNQLYAVEYLT----------------------NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLV 339 (390)
Q Consensus 282 ~~~~~~g~l~v~gg~~----------------------~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv 339 (390)
.+++++|+||++||.. ..+++||+++++|+.+.+||.++. .+++++++++|||
T Consensus 252 ~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~-----~~~~~~~~~~iyv 326 (346)
T TIGR03547 252 FAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLA-----YGVSVSWNNGVLL 326 (346)
T ss_pred eeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCce-----eeEEEEcCCEEEE
Confidence 5778999999999852 268899999999999999987653 2456788999999
Q ss_pred EcCCCCCCCCeEEEeeec
Q 016421 340 VGGQRGPEGENVVLNSWC 357 (390)
Q Consensus 340 ~GG~~~~~~~~~~i~~y~ 357 (390)
+||.........+|+.+.
T Consensus 327 ~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 327 IGGENSGGKAVTDVYLLS 344 (346)
T ss_pred EeccCCCCCEeeeEEEEE
Confidence 999887666677776653
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=279.10 Aligned_cols=281 Identities=17% Similarity=0.203 Sum_probs=211.9
Q ss_pred HHHHHHhhcCCchhhhhhcCc--cccEEEEEeCC--------CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCE
Q 016421 75 KRFHKLIKSGYLYGLRKQLGI--VEHWVYLVCDP--------RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSE 144 (390)
Q Consensus 75 k~w~~l~~s~~~~~~r~~~~~--~~~~l~~~~~~--------~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~ 144 (390)
.+|..+......+..|..+.. ..+.||++||. .++++||+.+++|..++++...+......+++++.++.
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~ 230 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGST 230 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCE
Confidence 467765443333444544443 36889999862 35899999999999877643222112223457788999
Q ss_pred EEEEccccc---CCeEEEEECCCCcEeecCCC---CCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016421 145 LLVFGRELF---DFAIWKYSLVFRSWMKCEGM---NHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 145 iy~~Gg~~~---~~~~~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
||++||... .+++++||+.+++|+.++++ |.+|..|++++++++||++||..... ..+++++||+.+++|+.+
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~ 309 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHC 309 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeC
Confidence 999999653 47899999999999999887 78999999999999999999987543 478899999999999998
Q ss_pred CC---CCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec
Q 016421 219 PS---MHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY 295 (390)
Q Consensus 219 ~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg 295 (390)
+. ++.+|..+++++++++||++||.++. ..+++++||+.+++|+.++.+.... .+|..+++++++++||++||
T Consensus 310 ~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~--~~~dv~~yD~~t~~W~~~~~~g~~P--~~R~~~~~~~~~~~iyv~GG 385 (470)
T PLN02193 310 STPGDSFSIRGGAGLEVVQGKVWVVYGFNGC--EVDDVHYYDPVQDKWTQVETFGVRP--SERSVFASAAVGKHIVIFGG 385 (470)
T ss_pred CCCCCCCCCCCCcEEEEECCcEEEEECCCCC--ccCceEEEECCCCEEEEeccCCCCC--CCcceeEEEEECCEEEEECC
Confidence 64 56788899999999999999998643 3688999999999999997652211 14566778999999999998
Q ss_pred CC--------------CeEEEEeCCCCceEEccCCCc---cccCCCcceeEEEEe--CCEEEEEcCCCCCCCCeEEEeee
Q 016421 296 LT--------------NMVKKYDKLKNTWDVLGRLPV---RADLSNGWGLAFKAC--GNELLVVGGQRGPEGENVVLNSW 356 (390)
Q Consensus 296 ~~--------------~~v~~yd~~~~~W~~v~~~~~---~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~i~~y 356 (390)
.. +++++||+.+++|+.+..++. .+..|...+++...+ ++.|+++||..+.+....|++++
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~ 465 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFY 465 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEE
Confidence 42 479999999999999876542 122221111222223 34599999998777778899999
Q ss_pred cCCC
Q 016421 357 CPKS 360 (390)
Q Consensus 357 ~~~~ 360 (390)
++++
T Consensus 466 ~~~~ 469 (470)
T PLN02193 466 GIDS 469 (470)
T ss_pred ecCC
Confidence 8765
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=273.19 Aligned_cols=251 Identities=22% Similarity=0.358 Sum_probs=195.6
Q ss_pred eEEEecCC----CceeeCCCC---CCCcccCCCCeeEEEeCCEEEEEccccc-----CCeEEEEECCCCcEeecCCC---
Q 016421 109 WEAFDPMK----KKWMALPKI---PCDECFNHADKESLAVGSELLVFGRELF-----DFAIWKYSLVFRSWMKCEGM--- 173 (390)
Q Consensus 109 ~~~~d~~~----~~W~~l~~~---p~~~~~~~~~~~~~~~~~~iy~~Gg~~~-----~~~~~~yd~~t~~W~~~~~~--- 173 (390)
.+.++|.+ ++|..++++ |.+|. .+.++++++.||++||... .+++++||+.+++|..++++
T Consensus 139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~----~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~ 214 (470)
T PLN02193 139 AYISLPSTPKLLGKWIKVEQKGEGPGLRC----SHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDV 214 (470)
T ss_pred EEEecCCChhhhceEEEcccCCCCCCCcc----ccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCC
Confidence 44457654 789998764 44443 3456788999999999642 25799999999999987643
Q ss_pred CC-CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC---CCCCcCceEEEECCEEEEEecccCCCcc
Q 016421 174 NH-PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM---HSPRRLCSGFFMDGKFYVIGGMSSPTVS 249 (390)
Q Consensus 174 ~~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 249 (390)
|. .|..+++++++++||++||..... ..+++++||+.+++|+.++++ |.+|..|++++++++||++||.+... .
T Consensus 215 P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~ 292 (470)
T PLN02193 215 PHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-R 292 (470)
T ss_pred CCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-C
Confidence 33 245778889999999999987543 578999999999999999887 78899999999999999999987543 5
Q ss_pred CceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC----CCeEEEEeCCCCceEEccCCCccccCCCc
Q 016421 250 LTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL----TNMVKKYDKLKNTWDVLGRLPVRADLSNG 325 (390)
Q Consensus 250 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~----~~~v~~yd~~~~~W~~v~~~~~~~~~~~~ 325 (390)
++++++||+.+++|+.++..... ...|..+.+++++++||++||. .+++++||+++++|++++.+...+..|
T Consensus 293 ~~~~~~yd~~t~~W~~~~~~~~~--~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R-- 368 (470)
T PLN02193 293 LKTLDSYNIVDKKWFHCSTPGDS--FSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSER-- 368 (470)
T ss_pred cceEEEEECCCCEEEeCCCCCCC--CCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCc--
Confidence 67899999999999998753211 1246667888999999999984 378999999999999997653222222
Q ss_pred ceeEEEEeCCEEEEEcCCCCC--------CCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016421 326 WGLAFKACGNELLVVGGQRGP--------EGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 326 ~~~~~~~~~~~lyv~GG~~~~--------~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
.++++++++++|||+||.... .....++++||+.+ ++|+.+..+
T Consensus 369 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t------~~W~~~~~~ 420 (470)
T PLN02193 369 SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET------LQWERLDKF 420 (470)
T ss_pred ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCc------CEEEEcccC
Confidence 236677899999999997531 12345799999999 899998753
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=268.87 Aligned_cols=257 Identities=19% Similarity=0.236 Sum_probs=197.6
Q ss_pred cccEEEEEeCC--CeeEEEecC--CCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEccccc---------CCeEEEEEC
Q 016421 96 VEHWVYLVCDP--RGWEAFDPM--KKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELF---------DFAIWKYSL 162 (390)
Q Consensus 96 ~~~~l~~~~~~--~~~~~~d~~--~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~---------~~~~~~yd~ 162 (390)
.++.||+++|. ..++.||+. +++|..++++|..+. ..+.+++.++.||++||... .+++++||+
T Consensus 37 ~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r---~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~ 113 (376)
T PRK14131 37 DNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPR---EQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDP 113 (376)
T ss_pred ECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCc---ccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeC
Confidence 37899998764 668899986 478999998875321 22456788999999999643 357999999
Q ss_pred CCCcEeecCC-CCCCCcceeeee-eCCEEEEEeccCCCC---------------------------------CccceEEE
Q 016421 163 VFRSWMKCEG-MNHPRCLFGSGS-LGSIAIIAGGSDKNG---------------------------------HVLKSAEL 207 (390)
Q Consensus 163 ~t~~W~~~~~-~~~~r~~~~~~~-~~~~lyv~GG~~~~~---------------------------------~~~~~~~~ 207 (390)
.+++|+.+++ +|.++..+++++ .+++||++||..... ...+++++
T Consensus 114 ~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~ 193 (376)
T PRK14131 114 KTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLS 193 (376)
T ss_pred CCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEE
Confidence 9999999885 356666676666 799999999975310 01468999
Q ss_pred EECCCCcEEEcCCCCC-CCcCceEEEECCEEEEEecccCCCccCceEE--EEeCCCCceEEccCCCCCCCCc-C--CCCC
Q 016421 208 YDSTTGRWEMLPSMHS-PRRLCSGFFMDGKFYVIGGMSSPTVSLTCGE--EFDLETRKWRKIEGMYPNVNRA-A--QAPP 281 (390)
Q Consensus 208 yd~~t~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~--~yd~~~~~W~~~~~~~~~~~~~-~--~~~~ 281 (390)
||+.+++|+.++++|. +|..++++.++++||++||....+.....++ .||+.+++|..+++||.++... + +..+
T Consensus 194 YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~ 273 (376)
T PRK14131 194 YDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGA 273 (376)
T ss_pred EECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceE
Confidence 9999999999999996 6778888889999999999754332333343 4688999999999998754211 1 1222
Q ss_pred EEEEECCEEEEEecCC----------------------CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEE
Q 016421 282 LVAVVDNQLYAVEYLT----------------------NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLV 339 (390)
Q Consensus 282 ~~~~~~g~l~v~gg~~----------------------~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv 339 (390)
.+++++++||++||.. ..+++||+++++|+.++.||.++.. +++++++++|||
T Consensus 274 ~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~-----~~av~~~~~iyv 348 (376)
T PRK14131 274 FAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAY-----GVSVSWNNGVLL 348 (376)
T ss_pred eceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccc-----eEEEEeCCEEEE
Confidence 3567899999999842 1467899999999999999887642 467789999999
Q ss_pred EcCCCCCCCCeEEEeeecCCC
Q 016421 340 VGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 340 ~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+||.........+|++|++++
T Consensus 349 ~GG~~~~~~~~~~v~~~~~~~ 369 (376)
T PRK14131 349 IGGETAGGKAVSDVTLLSWDG 369 (376)
T ss_pred EcCCCCCCcEeeeEEEEEEcC
Confidence 999876556678899999987
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=266.54 Aligned_cols=247 Identities=20% Similarity=0.243 Sum_probs=188.1
Q ss_pred CCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEEC--CCCcEeecCCCC-CCCcceeeeeeCCEEEEEeccCCC
Q 016421 122 LPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSL--VFRSWMKCEGMN-HPRCLFGSGSLGSIAIIAGGSDKN 198 (390)
Q Consensus 122 l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~--~t~~W~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~ 198 (390)
+|+||.++.. ..++++++.||++||.. .+.+++||+ .+++|..+++|| .+|..+++++++++||++||....
T Consensus 1 ~~~lp~~~~~----~~~~~~~~~vyv~GG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~ 75 (346)
T TIGR03547 1 LPDLPVGFKN----GTGAIIGDKVYVGLGSA-GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKA 75 (346)
T ss_pred CCCCCccccC----ceEEEECCEEEEEcccc-CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCC
Confidence 4667765443 23567899999999974 367899996 678999999998 589999999999999999998532
Q ss_pred C-----CccceEEEEECCCCcEEEcC-CCCCCCcCceEE-EECCEEEEEecccCCC------------------------
Q 016421 199 G-----HVLKSAELYDSTTGRWEMLP-SMHSPRRLCSGF-FMDGKFYVIGGMSSPT------------------------ 247 (390)
Q Consensus 199 ~-----~~~~~~~~yd~~t~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~------------------------ 247 (390)
. ..++++++||+.+++|+.++ ++|.+|..++++ +++++||++||.+...
T Consensus 76 ~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (346)
T TIGR03547 76 NSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAA 155 (346)
T ss_pred CCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHH
Confidence 2 14678999999999999997 456667667666 6899999999986320
Q ss_pred ---------ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCC------CeEEEEe--CCCCce
Q 016421 248 ---------VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT------NMVKKYD--KLKNTW 310 (390)
Q Consensus 248 ---------~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~------~~v~~yd--~~~~~W 310 (390)
...+.+++||+.+++|+.+++||.. .+..+++++++++||++||.. ..++.|| +++++|
T Consensus 156 ~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W 231 (346)
T TIGR03547 156 YFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFL----GTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEW 231 (346)
T ss_pred HhCCChhHcCccceEEEEECCCCceeECccCCCC----cCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCcee
Confidence 0136899999999999999998752 345567889999999999842 2455565 577899
Q ss_pred EEccCCCccccC--CCcceeEEEEeCCEEEEEcCCCCCC----------------CCeEEEeeecCCCCCCCCCCceEEe
Q 016421 311 DVLGRLPVRADL--SNGWGLAFKACGNELLVVGGQRGPE----------------GENVVLNSWCPKSGVNNGTLDWKVL 372 (390)
Q Consensus 311 ~~v~~~~~~~~~--~~~~~~~~~~~~~~lyv~GG~~~~~----------------~~~~~i~~y~~~~~~~~~~~~W~~~ 372 (390)
+.++.||.++.. ....++.+++++++|||+||..... .....+++||+++ ++|+.+
T Consensus 232 ~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~------~~W~~~ 305 (346)
T TIGR03547 232 NKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDN------GKWSKV 305 (346)
T ss_pred eecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecC------Cccccc
Confidence 999999876421 1113455678999999999975311 0124688999998 799999
Q ss_pred cccCccCeEEe
Q 016421 373 AEKQHVGVFVY 383 (390)
Q Consensus 373 ~~~p~~~~~~~ 383 (390)
++||..+....
T Consensus 306 ~~lp~~~~~~~ 316 (346)
T TIGR03547 306 GKLPQGLAYGV 316 (346)
T ss_pred CCCCCCceeeE
Confidence 99987665544
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=261.35 Aligned_cols=241 Identities=18% Similarity=0.186 Sum_probs=186.7
Q ss_pred eeEEEeCCEEEEEcccccC-------------CeEEEEE-CCC-CcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCC
Q 016421 136 KESLAVGSELLVFGRELFD-------------FAIWKYS-LVF-RSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGH 200 (390)
Q Consensus 136 ~~~~~~~~~iy~~Gg~~~~-------------~~~~~yd-~~t-~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~ 200 (390)
..+.++++.||++||.... +++++|+ +.. .+|..+++||.+|..+++++++++||++||.....
T Consensus 7 ~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~- 85 (323)
T TIGR03548 7 CYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSE- 85 (323)
T ss_pred EeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCC-
Confidence 3456789999999997533 3677775 332 37999999999998888889999999999987543
Q ss_pred ccceEEEEECCCCcE----EEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCc
Q 016421 201 VLKSAELYDSTTGRW----EMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRA 276 (390)
Q Consensus 201 ~~~~~~~yd~~t~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~ 276 (390)
..+++++||+.+++| +.+++||.+|..+++++++++||++||..... ..+++++||+.+++|++++++|..
T Consensus 86 ~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~p~~---- 160 (323)
T TIGR03548 86 RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELPDFPGE---- 160 (323)
T ss_pred CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECCCCCCC----
Confidence 478999999999998 77899999999999999999999999975432 478899999999999999988742
Q ss_pred CCCCCEEEEECCEEEEEecCC----CeEEEEeCCCCceEEccCCCccccCCCc-ceeEEEEeCCEEEEEcCCCCCC----
Q 016421 277 AQAPPLVAVVDNQLYAVEYLT----NMVKKYDKLKNTWDVLGRLPVRADLSNG-WGLAFKACGNELLVVGGQRGPE---- 347 (390)
Q Consensus 277 ~~~~~~~~~~~g~l~v~gg~~----~~v~~yd~~~~~W~~v~~~~~~~~~~~~-~~~~~~~~~~~lyv~GG~~~~~---- 347 (390)
.|..+.+++++++||++||.. .++++||+++++|+.++.|+.....+.. ..++++..+++|||+||.++..
T Consensus 161 ~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 240 (323)
T TIGR03548 161 PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDA 240 (323)
T ss_pred CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHH
Confidence 345567788999999999853 4689999999999999887532111111 1233445689999999986421
Q ss_pred ---------------------------CCeEEEeeecCCCCCCCCCCceEEecccCccCeEEeeeeee
Q 016421 348 ---------------------------GENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVL 388 (390)
Q Consensus 348 ---------------------------~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~ 388 (390)
...+++++||+.+ ++|+.++++|...+...+.+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~------~~W~~~~~~p~~~r~~~~~~~~ 302 (323)
T TIGR03548 241 VIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRT------GKWKSIGNSPFFARCGAALLLT 302 (323)
T ss_pred HhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCC------CeeeEcccccccccCchheEEE
Confidence 1235799999999 8999999887545544444443
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=261.09 Aligned_cols=246 Identities=16% Similarity=0.280 Sum_probs=189.9
Q ss_pred ccccEEEEEeCC----------------CeeEEEe-cCCC-ceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc---c
Q 016421 95 IVEHWVYLVCDP----------------RGWEAFD-PMKK-KWMALPKIPCDECFNHADKESLAVGSELLVFGREL---F 153 (390)
Q Consensus 95 ~~~~~l~~~~~~----------------~~~~~~d-~~~~-~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~---~ 153 (390)
...+.||++||. .+++.|+ +... +|..+++||.++.. ++++++++.||++||.. .
T Consensus 11 ~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~----~~~~~~~~~lyviGG~~~~~~ 86 (323)
T TIGR03548 11 IIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAY----GASVSVENGIYYIGGSNSSER 86 (323)
T ss_pred EECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccc----eEEEEECCEEEEEcCCCCCCC
Confidence 346788888862 1455664 4323 79999999987643 24577899999999964 2
Q ss_pred CCeEEEEECCCCcE----eecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCC-CCcCc
Q 016421 154 DFAIWKYSLVFRSW----MKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHS-PRRLC 228 (390)
Q Consensus 154 ~~~~~~yd~~t~~W----~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~r~~~ 228 (390)
.+++++||+.+++| ..++++|.+|..+++++++++||++||.... ...+++++||+.+++|+.+++||. +|..+
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~ 165 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEPRVQP 165 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCCCCcc
Confidence 36899999999988 7789999999999999999999999997543 347899999999999999999885 78888
Q ss_pred eEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCC-CCEEEEECCEEEEEecCC----------
Q 016421 229 SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQA-PPLVAVVDNQLYAVEYLT---------- 297 (390)
Q Consensus 229 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~~~~g~l~v~gg~~---------- 297 (390)
.+++++++||++||.+.. ...++++||+.+++|+.+++++.......+. ...+++.+++||++||..
T Consensus 166 ~~~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 243 (323)
T TIGR03548 166 VCVKLQNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVID 243 (323)
T ss_pred eEEEECCEEEEEcCCCCc--cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhh
Confidence 888999999999998643 2456899999999999998875321111122 223445579999999853
Q ss_pred ---------------------------CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCe
Q 016421 298 ---------------------------NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGEN 350 (390)
Q Consensus 298 ---------------------------~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~ 350 (390)
+.+++||+.+++|+.++++|...+ .++++++++++||++||...+.-.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r----~~~~~~~~~~~iyv~GG~~~pg~rt 319 (323)
T TIGR03548 244 LATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFAR----CGAALLLTGNNIFSINGELKPGVRT 319 (323)
T ss_pred hhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccccc----CchheEEECCEEEEEeccccCCcCC
Confidence 579999999999999998774322 2466889999999999987655443
Q ss_pred E
Q 016421 351 V 351 (390)
Q Consensus 351 ~ 351 (390)
.
T Consensus 320 ~ 320 (323)
T TIGR03548 320 P 320 (323)
T ss_pred c
Confidence 3
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=256.32 Aligned_cols=254 Identities=19% Similarity=0.212 Sum_probs=191.2
Q ss_pred ceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECC--CCcEeecCCCC-CCCcceeeeeeCCEEEEEec
Q 016421 118 KWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLV--FRSWMKCEGMN-HPRCLFGSGSLGSIAIIAGG 194 (390)
Q Consensus 118 ~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~--t~~W~~~~~~~-~~r~~~~~~~~~~~lyv~GG 194 (390)
.++.+++||.++... +++++++.||++||.. .+.+++||+. +++|..++++| .+|..+++++++++||++||
T Consensus 18 ~~~~l~~lP~~~~~~----~~~~~~~~iyv~gG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG 92 (376)
T PRK14131 18 NAEQLPDLPVPFKNG----TGAIDNNTVYVGLGSA-GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGG 92 (376)
T ss_pred ecccCCCCCcCccCC----eEEEECCEEEEEeCCC-CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcC
Confidence 366788898765432 3567899999999964 3568899986 47899999987 58988999999999999999
Q ss_pred cCCC-----CCccceEEEEECCCCcEEEcCC-CCCCCcCceEEE-ECCEEEEEecccCCC--------------------
Q 016421 195 SDKN-----GHVLKSAELYDSTTGRWEMLPS-MHSPRRLCSGFF-MDGKFYVIGGMSSPT-------------------- 247 (390)
Q Consensus 195 ~~~~-----~~~~~~~~~yd~~t~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~~-------------------- 247 (390)
.... ...++++++||+.+++|+.+++ +|.++..+++++ ++++||++||.....
T Consensus 93 ~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~ 172 (376)
T PRK14131 93 IGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDK 172 (376)
T ss_pred CCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhh
Confidence 8641 1246789999999999999985 456666777666 899999999975310
Q ss_pred -------------ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCC------CeEE--EEeCC
Q 016421 248 -------------VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT------NMVK--KYDKL 306 (390)
Q Consensus 248 -------------~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~------~~v~--~yd~~ 306 (390)
...+.+++||+.+++|+.++++|.. .+..++++.++++||++||.. ..++ .||++
T Consensus 173 i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~----~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~ 248 (376)
T PRK14131 173 INDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFL----GTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGN 248 (376)
T ss_pred hHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCC----CCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCC
Confidence 0246799999999999999988752 244567888999999999832 2333 45788
Q ss_pred CCceEEccCCCccccCC---CcceeEEEEeCCEEEEEcCCCCCCC----------------CeEEEeeecCCCCCCCCCC
Q 016421 307 KNTWDVLGRLPVRADLS---NGWGLAFKACGNELLVVGGQRGPEG----------------ENVVLNSWCPKSGVNNGTL 367 (390)
Q Consensus 307 ~~~W~~v~~~~~~~~~~---~~~~~~~~~~~~~lyv~GG~~~~~~----------------~~~~i~~y~~~~~~~~~~~ 367 (390)
+++|+.++.||.++... ...++.+++++++|||+||...... ....+++||+++ +
T Consensus 249 ~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~------~ 322 (376)
T PRK14131 249 NLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVN------G 322 (376)
T ss_pred CcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecC------C
Confidence 99999999998765311 1122335678999999999763211 113477999998 7
Q ss_pred ceEEecccCccCeEEeeee
Q 016421 368 DWKVLAEKQHVGVFVYNCA 386 (390)
Q Consensus 368 ~W~~~~~~p~~~~~~~~~~ 386 (390)
+|+.+++||..+..+.+++
T Consensus 323 ~W~~~~~lp~~r~~~~av~ 341 (376)
T PRK14131 323 KWQKVGELPQGLAYGVSVS 341 (376)
T ss_pred cccccCcCCCCccceEEEE
Confidence 9999999998776665443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=262.82 Aligned_cols=197 Identities=17% Similarity=0.372 Sum_probs=173.6
Q ss_pred cccEEEEEeCC------CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEee
Q 016421 96 VEHWVYLVCDP------RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMK 169 (390)
Q Consensus 96 ~~~~l~~~~~~------~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~ 169 (390)
.++.+|++||. ..++.|||.+++|..+++|+.++.. +++++.++.||++||......+++|||.+++|..
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~----~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY----ASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc----ceEEEECCEEEEECCcCCCCceEEEECCCCeEEE
Confidence 46789999863 4688999999999999999987653 3467789999999997655679999999999999
Q ss_pred cCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCcc
Q 016421 170 CEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVS 249 (390)
Q Consensus 170 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 249 (390)
+++||.+|..+++++++++||++||.... .+.+++|||.+++|+.+++|+.+|..+++++++|+||++||.
T Consensus 346 ~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~------ 416 (480)
T PHA02790 346 MPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN------ 416 (480)
T ss_pred CCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc------
Confidence 99999999999999999999999998643 367999999999999999999999999999999999999973
Q ss_pred CceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----CCeEEEEeCCCCceEEc
Q 016421 250 LTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-----TNMVKKYDKLKNTWDVL 313 (390)
Q Consensus 250 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-----~~~v~~yd~~~~~W~~v 313 (390)
+++||+.+++|+.+++|+. +|..+++++++|+||++||. ...+++||+++++|+..
T Consensus 417 ---~e~ydp~~~~W~~~~~m~~-----~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 417 ---AEFYCESSNTWTLIDDPIY-----PRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred ---eEEecCCCCcEeEcCCCCC-----CccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 5789999999999999987 45666899999999999984 36799999999999864
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=262.40 Aligned_cols=215 Identities=20% Similarity=0.348 Sum_probs=184.7
Q ss_pred cccEEEEEeCC-------CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc---cCCeEEEEECCCC
Q 016421 96 VEHWVYLVCDP-------RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL---FDFAIWKYSLVFR 165 (390)
Q Consensus 96 ~~~~l~~~~~~-------~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~---~~~~~~~yd~~t~ 165 (390)
.++.+|++||. .+++.||+.+++|..++++|.++.. +++++.+++||++||.. ..+++++||+.++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~----~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKN----PGVTVFNNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccccc----ceEEEECCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 47889999862 3688999999999999999876643 34678899999999965 3467899999999
Q ss_pred cEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccC
Q 016421 166 SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSS 245 (390)
Q Consensus 166 ~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 245 (390)
+|+.++++|.+|..+++++++++||++||........+++++||+.+++|+.++++|.+|..++++.++++||++||.+.
T Consensus 369 ~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 369 KWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISY 448 (534)
T ss_pred ceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccC
Confidence 99999999999999999999999999999765444578999999999999999999999999999999999999999864
Q ss_pred CC--ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----CCeEEEEeCCCCceEEccCCCc
Q 016421 246 PT--VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-----TNMVKKYDKLKNTWDVLGRLPV 318 (390)
Q Consensus 246 ~~--~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-----~~~v~~yd~~~~~W~~v~~~~~ 318 (390)
.. ...+.+++||+.+++|+.+++++. ++..+++++.+++||++||. .+.+++||+++++|+.+..+|.
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNF-----PRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCc-----ccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence 32 125669999999999999998876 45566788899999999984 4689999999999999988765
Q ss_pred c
Q 016421 319 R 319 (390)
Q Consensus 319 ~ 319 (390)
.
T Consensus 524 ~ 524 (534)
T PHA03098 524 V 524 (534)
T ss_pred c
Confidence 3
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.4e-31 Score=217.49 Aligned_cols=242 Identities=17% Similarity=0.200 Sum_probs=192.8
Q ss_pred CeeEEEeCCEEEEEcccc--------cCCeEEEEECCCCcEeecCC-------------CCCCCcceeeeeeCCEEEEEe
Q 016421 135 DKESLAVGSELLVFGREL--------FDFAIWKYSLVFRSWMKCEG-------------MNHPRCLFGSGSLGSIAIIAG 193 (390)
Q Consensus 135 ~~~~~~~~~~iy~~Gg~~--------~~~~~~~yd~~t~~W~~~~~-------------~~~~r~~~~~~~~~~~lyv~G 193 (390)
.+++++++..||-|||+- ..-++.++|..+-+|..+|+ .|..|.+|.++.+++++|+-|
T Consensus 16 NHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWG 95 (392)
T KOG4693|consen 16 NHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWG 95 (392)
T ss_pred cceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEc
Confidence 456789999999999964 22578999999999999876 245689999999999999999
Q ss_pred ccCCCCCccceEEEEECCCCcEEEc---CCCCCCCcCceEEEECCEEEEEecccCC-CccCceEEEEeCCCCceEEccCC
Q 016421 194 GSDKNGHVLKSAELYDSTTGRWEML---PSMHSPRRLCSGFFMDGKFYVIGGMSSP-TVSLTCGEEFDLETRKWRKIEGM 269 (390)
Q Consensus 194 G~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~~~ 269 (390)
|.+.+....+.++.||++++.|... +-+|..|.+|++++.++.+|++||+... ....++++.+|..|.+|+.+...
T Consensus 96 GRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tk 175 (392)
T KOG4693|consen 96 GRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTK 175 (392)
T ss_pred CccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhcc
Confidence 9988766788999999999999874 3578889999999999999999999653 34567899999999999998754
Q ss_pred CCCCCCcCCCCCEEEEECCEEEEEec--------------CCCeEEEEeCCCCceEEccCC---CccccCCCcceeEEEE
Q 016421 270 YPNVNRAAQAPPLVAVVDNQLYAVEY--------------LTNMVKKYDKLKNTWDVLGRL---PVRADLSNGWGLAFKA 332 (390)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~g~l~v~gg--------------~~~~v~~yd~~~~~W~~v~~~---~~~~~~~~~~~~~~~~ 332 (390)
..+.. -|-.++++++++.+|++|| +...+..+|..++.|.+.+.- |..++ ++++.+
T Consensus 176 g~Ppr--wRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR-----SHS~fv 248 (392)
T KOG4693|consen 176 GDPPR--WRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR-----SHSTFV 248 (392)
T ss_pred CCCch--hhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc-----ccceEE
Confidence 43211 2345568889999999997 235788899999999997543 33333 267789
Q ss_pred eCCEEEEEcCCCCCC-CCeEEEeeecCCCCCCCCCCceEEecccC--ccCeEEeeeeeec
Q 016421 333 CGNELLVVGGQRGPE-GENVVLNSWCPKSGVNNGTLDWKVLAEKQ--HVGVFVYNCAVLG 389 (390)
Q Consensus 333 ~~~~lyv~GG~~~~~-~~~~~i~~y~~~~~~~~~~~~W~~~~~~p--~~~~~~~~~~~~~ 389 (390)
++++||+|||+.+.- ...+++++|||.+ -.|+++.... ++.|.-+||+|+|
T Consensus 249 Yng~~Y~FGGYng~ln~HfndLy~FdP~t------~~W~~I~~~Gk~P~aRRRqC~~v~g 302 (392)
T KOG4693|consen 249 YNGKMYMFGGYNGTLNVHFNDLYCFDPKT------SMWSVISVRGKYPSARRRQCSVVSG 302 (392)
T ss_pred EcceEEEecccchhhhhhhcceeeccccc------chheeeeccCCCCCcccceeEEEEC
Confidence 999999999998743 3567899999999 7899997642 4445556666665
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=209.16 Aligned_cols=241 Identities=15% Similarity=0.245 Sum_probs=190.0
Q ss_pred ccEEEEEeC-----------CCeeEEEecCCCceeeCCCC------CC--C-cccCCCCeeEEEeCCEEEEEcccc----
Q 016421 97 EHWVYLVCD-----------PRGWEAFDPMKKKWMALPKI------PC--D-ECFNHADKESLAVGSELLVFGREL---- 152 (390)
Q Consensus 97 ~~~l~~~~~-----------~~~~~~~d~~~~~W~~l~~~------p~--~-~~~~~~~~~~~~~~~~iy~~Gg~~---- 152 (390)
...+|.||+ ..++++++..+-+|.++|+- +. + ..+.+.++.++...+++|+.||.+
T Consensus 23 G~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~eg 102 (392)
T KOG4693|consen 23 GSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEG 102 (392)
T ss_pred cceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCccc
Confidence 678999975 46788999999999998762 11 1 113345577889999999999955
Q ss_pred cCCeEEEEECCCCcEeec---CCCCCCCcceeeeeeCCEEEEEeccCCCC-CccceEEEEECCCCcEEEcC---CCCCCC
Q 016421 153 FDFAIWKYSLVFRSWMKC---EGMNHPRCLFGSGSLGSIAIIAGGSDKNG-HVLKSAELYDSTTGRWEMLP---SMHSPR 225 (390)
Q Consensus 153 ~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~yd~~t~~W~~~~---~~~~~r 225 (390)
..+.++.|||.+++|.+. ...|.+|.+|++++.++.+|+|||+..+. ..++++.++|..|.+|+.+. +.|.-|
T Consensus 103 aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR 182 (392)
T KOG4693|consen 103 ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR 182 (392)
T ss_pred ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh
Confidence 357889999999999764 34789999999999999999999986543 36789999999999999974 445557
Q ss_pred cCceEEEECCEEEEEecccCC--------CccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-
Q 016421 226 RLCSGFFMDGKFYVIGGMSSP--------TVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL- 296 (390)
Q Consensus 226 ~~~~~~~~~~~iyv~GG~~~~--------~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~- 296 (390)
..|++.++++.+|++||.... ..+.+.+..+|..|+.|...+.-+. -+..|..+.+.+.+|+||++||+
T Consensus 183 DFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~--~P~GRRSHS~fvYng~~Y~FGGYn 260 (392)
T KOG4693|consen 183 DFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTM--KPGGRRSHSTFVYNGKMYMFGGYN 260 (392)
T ss_pred hhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCc--CCCcccccceEEEcceEEEecccc
Confidence 889999999999999998642 2345678889999999998754322 11255667799999999999984
Q ss_pred ------CCeEEEEeCCCCceEEccC---CCccccCCCcceeEEEEeCCEEEEEcCCC
Q 016421 297 ------TNMVKKYDKLKNTWDVLGR---LPVRADLSNGWGLAFKACGNELLVVGGQR 344 (390)
Q Consensus 297 ------~~~v~~yd~~~~~W~~v~~---~~~~~~~~~~~~~~~~~~~~~lyv~GG~~ 344 (390)
.+++++|||.+..|+.|.. -|..++. .++++.++++|+|||..
T Consensus 261 g~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRR-----qC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 261 GTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRR-----QCSVVSGGKVYLFGGTS 312 (392)
T ss_pred hhhhhhhcceeecccccchheeeeccCCCCCcccc-----eeEEEECCEEEEecCCC
Confidence 3689999999999999863 3333332 56778899999999965
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-25 Score=210.39 Aligned_cols=231 Identities=23% Similarity=0.310 Sum_probs=189.9
Q ss_pred eeEEEeCCEEEEEcccccC-----CeEEEEECCCCcEeecC---CCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEE
Q 016421 136 KESLAVGSELLVFGRELFD-----FAIWKYSLVFRSWMKCE---GMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAEL 207 (390)
Q Consensus 136 ~~~~~~~~~iy~~Gg~~~~-----~~~~~yd~~t~~W~~~~---~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 207 (390)
++++..++.+|++||.... .+++++|..+..|.... ..|.+|..|.++.++++||+|||........++++.
T Consensus 64 hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~ 143 (482)
T KOG0379|consen 64 HSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHS 143 (482)
T ss_pred cceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEe
Confidence 3456679999999996521 25999999999997654 357899999999999999999999864556889999
Q ss_pred EECCCCcEEEc---CCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEE
Q 016421 208 YDSTTGRWEML---PSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVA 284 (390)
Q Consensus 208 yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 284 (390)
||+.|++|..+ ...|.+|.+|++++++.+|||+||.+......+++++||+.+.+|.++......+. +|.+|+++
T Consensus 144 ~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~--pR~gH~~~ 221 (482)
T KOG0379|consen 144 LDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS--PRYGHAMV 221 (482)
T ss_pred ccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC--CCCCceEE
Confidence 99999999886 35688899999999999999999998876679999999999999999876544332 68889999
Q ss_pred EECCEEEEEec------CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCC-CeEEEeeec
Q 016421 285 VVDNQLYAVEY------LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEG-ENVVLNSWC 357 (390)
Q Consensus 285 ~~~g~l~v~gg------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~-~~~~i~~y~ 357 (390)
+.+++++++|| ..++++.+|..+.+|.++......+..| .++..+..+.+++++||...... ...+++.|+
T Consensus 222 ~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R--~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~ 299 (482)
T KOG0379|consen 222 VVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPR--SGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLD 299 (482)
T ss_pred EECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCc--ceeeeEEECCEEEEEcCCccccccccccccccc
Confidence 99999999986 3579999999999999876444433333 34667789999999999876533 567788999
Q ss_pred CCCCCCCCCCceEEecccC
Q 016421 358 PKSGVNNGTLDWKVLAEKQ 376 (390)
Q Consensus 358 ~~~~~~~~~~~W~~~~~~p 376 (390)
.++ ..|..+....
T Consensus 300 ~~~------~~w~~~~~~~ 312 (482)
T KOG0379|consen 300 LET------LVWSKVESVG 312 (482)
T ss_pred ccc------cceeeeeccc
Confidence 987 7999887664
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=190.43 Aligned_cols=223 Identities=20% Similarity=0.257 Sum_probs=177.6
Q ss_pred eCCEEEEEcccccC-------CeEEEEECCCCcEeec--CCCCCCCcceeeeeeC-CEEEEEeccCCCCC-----ccceE
Q 016421 141 VGSELLVFGRELFD-------FAIWKYSLVFRSWMKC--EGMNHPRCLFGSGSLG-SIAIIAGGSDKNGH-----VLKSA 205 (390)
Q Consensus 141 ~~~~iy~~Gg~~~~-------~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~-----~~~~~ 205 (390)
..+.|++|||..+. +++|.||..+++|+.+ |..|.||+.|.++++- +.+|++||--..-. ..+++
T Consensus 77 ekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~ 156 (521)
T KOG1230|consen 77 EKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDL 156 (521)
T ss_pred CcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhe
Confidence 35799999996533 6899999999999887 4568899999887774 89999999642211 46789
Q ss_pred EEEECCCCcEEEcC--CCCCCCcCceEEEECCEEEEEecccC---CCccCceEEEEeCCCCceEEccCCCCCCCCcCCCC
Q 016421 206 ELYDSTTGRWEMLP--SMHSPRRLCSGFFMDGKFYVIGGMSS---PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAP 280 (390)
Q Consensus 206 ~~yd~~t~~W~~~~--~~~~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 280 (390)
|.||+.+++|+++. .-|.+|.+|.+++...+|++|||... ...+.+++++||+.+-+|+.+.+ +.. .+.+|++
T Consensus 157 W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sga-~PtpRSG 234 (521)
T KOG1230|consen 157 WLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SGA-GPTPRSG 234 (521)
T ss_pred eeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CCC-CCCCCCc
Confidence 99999999999974 56889999999999999999999854 33568999999999999999987 322 3447788
Q ss_pred CEEEEE-CCEEEEEecCC--------------CeEEEEeCCC-----CceEEccCCCccccCCCcceeEEEEeCCEEEEE
Q 016421 281 PLVAVV-DNQLYAVEYLT--------------NMVKKYDKLK-----NTWDVLGRLPVRADLSNGWGLAFKACGNELLVV 340 (390)
Q Consensus 281 ~~~~~~-~g~l~v~gg~~--------------~~v~~yd~~~-----~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~ 340 (390)
+++.+. +|.|||+||++ ++++.+++++ -.|+++.+....+..|++++++ +.-+++-+.|
T Consensus 235 cq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~-va~n~kal~F 313 (521)
T KOG1230|consen 235 CQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVA-VAKNHKALFF 313 (521)
T ss_pred ceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEE-EecCCceEEe
Confidence 888887 99999999843 4778888888 4799998877777777776653 3457799999
Q ss_pred cCCCCC--------CCCeEEEeeecCCCCCCCCCCceEEe
Q 016421 341 GGQRGP--------EGENVVLNSWCPKSGVNNGTLDWKVL 372 (390)
Q Consensus 341 GG~~~~--------~~~~~~i~~y~~~~~~~~~~~~W~~~ 372 (390)
||+-+- +...++++.||... ++|...
T Consensus 314 GGV~D~eeeeEsl~g~F~NDLy~fdlt~------nrW~~~ 347 (521)
T KOG1230|consen 314 GGVCDLEEEEESLSGEFFNDLYFFDLTR------NRWSEG 347 (521)
T ss_pred cceecccccchhhhhhhhhhhhheeccc------chhhHh
Confidence 997541 23457899999988 899754
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=193.22 Aligned_cols=218 Identities=19% Similarity=0.228 Sum_probs=178.8
Q ss_pred ccEEEEEeC------CC--eeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEccccc----CCeEEEEECCC
Q 016421 97 EHWVYLVCD------PR--GWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELF----DFAIWKYSLVF 164 (390)
Q Consensus 97 ~~~l~~~~~------~~--~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~----~~~~~~yd~~t 164 (390)
.+.+|++|| .. +++.||..+..|.....-...+ .....+..++++++||+|||... .++++.||+.|
T Consensus 70 ~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p-~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t 148 (482)
T KOG0379|consen 70 GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEP-SPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLST 148 (482)
T ss_pred CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCC-CcccceeEEEECCeEEEEccccCCCCChhheEeccCCC
Confidence 788999975 23 4999999999997765433322 33344567888999999999652 35899999999
Q ss_pred CcEeecCC---CCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEc---CCCCCCCcCceEEEECCEEE
Q 016421 165 RSWMKCEG---MNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML---PSMHSPRRLCSGFFMDGKFY 238 (390)
Q Consensus 165 ~~W~~~~~---~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~iy 238 (390)
++|..+.+ +|.+|..|++++++.++||+||........+++++||+.+.+|.++ ++.|.||+.|++++++++++
T Consensus 149 ~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~ 228 (482)
T KOG0379|consen 149 RTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLL 228 (482)
T ss_pred CcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEE
Confidence 99988754 6889999999999999999999987665799999999999999986 46688999999999999999
Q ss_pred EEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-------CCeEEEEeCCCCceE
Q 016421 239 VIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-------TNMVKKYDKLKNTWD 311 (390)
Q Consensus 239 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-------~~~v~~yd~~~~~W~ 311 (390)
++||.......+++++.+|+.+.+|..+..... ...+|..+..++.+..++++||. ..+++.||.+++.|.
T Consensus 229 v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~--~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~ 306 (482)
T KOG0379|consen 229 VFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGD--LPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWS 306 (482)
T ss_pred EEeccccCCceecceEeeecccceeeeccccCC--CCCCcceeeeEEECCEEEEEcCCccccccccccccccccccccee
Confidence 999998666789999999999999996654332 12266777788999999999873 357889999999999
Q ss_pred EccCCC
Q 016421 312 VLGRLP 317 (390)
Q Consensus 312 ~v~~~~ 317 (390)
.+....
T Consensus 307 ~~~~~~ 312 (482)
T KOG0379|consen 307 KVESVG 312 (482)
T ss_pred eeeccc
Confidence 987666
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=175.85 Aligned_cols=253 Identities=17% Similarity=0.185 Sum_probs=183.1
Q ss_pred CCCCChHHHHHHHhhhccccchhhh-HhhcHHHHHHhhcCCchhhhhh----cCccccEEEEEeC----------CCeeE
Q 016421 46 LLPGLVDDVALNCLAFACTSDYASL-LFINKRFHKLIKSGYLYGLRKQ----LGIVEHWVYLVCD----------PRGWE 110 (390)
Q Consensus 46 ~~~~LP~dl~~~iL~rlp~~~l~~~-~~V~k~w~~l~~s~~~~~~r~~----~~~~~~~l~~~~~----------~~~~~ 110 (390)
+.+.|-++.|.+|+..+-.+...+. ..+| .-+..|.. .....+-|++||| .++++
T Consensus 32 l~~e~de~~i~~~iq~~eaK~~e~~~e~~~----------~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy 101 (521)
T KOG1230|consen 32 LNEELDEADIAEIIQSLEAKQIEHVVETSV----------PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLY 101 (521)
T ss_pred cCcccchHHHHHHHHhhhhhccceeeeccC----------CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeee
Confidence 3445557888888888877643111 1111 11122222 1123457888875 36889
Q ss_pred EEecCCCceeeC--CCCCCCcccCCCCeeEEEeCCEEEEEcccccC---------CeEEEEECCCCcEeecCC--CCCCC
Q 016421 111 AFDPMKKKWMAL--PKIPCDECFNHADKESLAVGSELLVFGRELFD---------FAIWKYSLVFRSWMKCEG--MNHPR 177 (390)
Q Consensus 111 ~~d~~~~~W~~l--~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~---------~~~~~yd~~t~~W~~~~~--~~~~r 177 (390)
.||..+++|..+ |.-|.+++.+. +++...+.+|+|||...+ .++|.||..+++|.++.. -|.+|
T Consensus 102 ~Yn~k~~eWkk~~spn~P~pRsshq---~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~R 178 (521)
T KOG1230|consen 102 SYNTKKNEWKKVVSPNAPPPRSSHQ---AVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPR 178 (521)
T ss_pred EEeccccceeEeccCCCcCCCccce---eEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCC
Confidence 999999999876 44555555432 234446899999996532 579999999999998754 58999
Q ss_pred cceeeeeeCCEEEEEeccCCCCC---ccceEEEEECCCCcEEEcCC---CCCCCcCceEEEE-CCEEEEEecccC-----
Q 016421 178 CLFGSGSLGSIAIIAGGSDKNGH---VLKSAELYDSTTGRWEMLPS---MHSPRRLCSGFFM-DGKFYVIGGMSS----- 245 (390)
Q Consensus 178 ~~~~~~~~~~~lyv~GG~~~~~~---~~~~~~~yd~~t~~W~~~~~---~~~~r~~~~~~~~-~~~iyv~GG~~~----- 245 (390)
++|.+++...+|++|||+....+ +.+++++||+.+-+|..+.+ .|.+|.++..++. +|.|||.||++.
T Consensus 179 SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK 258 (521)
T KOG1230|consen 179 SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKK 258 (521)
T ss_pred ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhh
Confidence 99999999999999999875443 78999999999999999753 4788999998887 999999999864
Q ss_pred ---CCccCceEEEEeCCC-----CceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEec--------------CCCeEEE
Q 016421 246 ---PTVSLTCGEEFDLET-----RKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEY--------------LTNMVKK 302 (390)
Q Consensus 246 ---~~~~~~~v~~yd~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg--------------~~~~v~~ 302 (390)
.+...++++..++.+ -.|..+.+..... .+|.+..+++ -+++-+.+|| ..++++.
T Consensus 259 ~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kP--spRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~ 336 (521)
T KOG1230|consen 259 DVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKP--SPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYF 336 (521)
T ss_pred hhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCC--CCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhh
Confidence 234567889999988 4688876543321 1455555554 4568999987 2478999
Q ss_pred EeCCCCceEEc
Q 016421 303 YDKLKNTWDVL 313 (390)
Q Consensus 303 yd~~~~~W~~v 313 (390)
||...+.|...
T Consensus 337 fdlt~nrW~~~ 347 (521)
T KOG1230|consen 337 FDLTRNRWSEG 347 (521)
T ss_pred eecccchhhHh
Confidence 99999999874
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-22 Score=180.19 Aligned_cols=263 Identities=19% Similarity=0.288 Sum_probs=186.1
Q ss_pred HHHHHHhhcC-CchhhhhhcCc--cccEEEEEeCC-----CeeEEEecCCCceeeCC---CCCCCcccCCCCeeEEEeCC
Q 016421 75 KRFHKLIKSG-YLYGLRKQLGI--VEHWVYLVCDP-----RGWEAFDPMKKKWMALP---KIPCDECFNHADKESLAVGS 143 (390)
Q Consensus 75 k~w~~l~~s~-~~~~~r~~~~~--~~~~l~~~~~~-----~~~~~~d~~~~~W~~l~---~~p~~~~~~~~~~~~~~~~~ 143 (390)
-+||+...+. ...+.|+.+.. .++.+.+|||. ..++.||.++++|...+ .+|.. .+.+..++.+.
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpg----cAA~GfvcdGt 92 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPG----CAAFGFVCDGT 92 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCc----hhhcceEecCc
Confidence 3577655442 23344443332 36888888763 56789999999997542 23322 22345677899
Q ss_pred EEEEEcccc----cCCeEEEEECCCCcEeecC-------CCCCCCcceeeeeeCCEEEEEeccCCCC--------Cccce
Q 016421 144 ELLVFGREL----FDFAIWKYSLVFRSWMKCE-------GMNHPRCLFGSGSLGSIAIIAGGSDKNG--------HVLKS 204 (390)
Q Consensus 144 ~iy~~Gg~~----~~~~~~~yd~~t~~W~~~~-------~~~~~r~~~~~~~~~~~lyv~GG~~~~~--------~~~~~ 204 (390)
+||+|||.. +++++|......=.|+++. ++|.||.+|+...++++.|+|||...+. +++++
T Consensus 93 rilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnD 172 (830)
T KOG4152|consen 93 RILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLND 172 (830)
T ss_pred eEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcc
Confidence 999999954 3455443333333455553 3578999999999999999999974332 27889
Q ss_pred EEEEECCCCc----EEEc---CCCCCCCcCceEEEE------CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCC
Q 016421 205 AELYDSTTGR----WEML---PSMHSPRRLCSGFFM------DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYP 271 (390)
Q Consensus 205 ~~~yd~~t~~----W~~~---~~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 271 (390)
+++.++.-+. |... +.+|.+|..|.++.+ ..++||+||.++- .+.++|.+|+.|.+|.+...-
T Consensus 173 lY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~--RLgDLW~Ldl~Tl~W~kp~~~-- 248 (830)
T KOG4152|consen 173 LYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC--RLGDLWTLDLDTLTWNKPSLS-- 248 (830)
T ss_pred eEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc--cccceeEEecceeeccccccc--
Confidence 9999888654 8653 577889999999876 3389999999764 588999999999999876421
Q ss_pred CCCCcCCCCCEEEEECCEEEEEec-------------------CCCeEEEEeCCCCceEEcc--CCCccccCCCcceeEE
Q 016421 272 NVNRAAQAPPLVAVVDNQLYAVEY-------------------LTNMVKKYDKLKNTWDVLG--RLPVRADLSNGWGLAF 330 (390)
Q Consensus 272 ~~~~~~~~~~~~~~~~g~l~v~gg-------------------~~~~v~~yd~~~~~W~~v~--~~~~~~~~~~~~~~~~ 330 (390)
.....+|+-|.+.+++++||++|| ..+++-+++..+..|+.+- .+......|.+.||++
T Consensus 249 G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCA 328 (830)
T KOG4152|consen 249 GVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCA 328 (830)
T ss_pred CCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccccccccccccccee
Confidence 111125566779999999999998 3467788999999999864 2222223334567899
Q ss_pred EEeCCEEEEEcCCCC
Q 016421 331 KACGNELLVVGGQRG 345 (390)
Q Consensus 331 ~~~~~~lyv~GG~~~ 345 (390)
++++.+||+-.|.++
T Consensus 329 vAigtRlYiWSGRDG 343 (830)
T KOG4152|consen 329 VAIGTRLYIWSGRDG 343 (830)
T ss_pred EEeccEEEEEeccch
Confidence 999999999999886
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-21 Score=171.72 Aligned_cols=256 Identities=15% Similarity=0.182 Sum_probs=180.0
Q ss_pred CceeeCCCCCCCcccCCCCeeEEEeCCEEEEEccccc--CCeEEEEECCCCcEeec---CCCCCCCcceeeeeeCCEEEE
Q 016421 117 KKWMALPKIPCDECFNHADKESLAVGSELLVFGRELF--DFAIWKYSLVFRSWMKC---EGMNHPRCLFGSGSLGSIAII 191 (390)
Q Consensus 117 ~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~--~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~lyv 191 (390)
-+|.++.....+....++++-+++....|.+|||.+. -.++++||..+++|..- .+.|.+-..|+.+..+.+||+
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilv 96 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILV 96 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEE
Confidence 3577664432221112223346888999999998653 36789999999999653 356777788888888999999
Q ss_pred EeccCCCCCccceEEEEECCCCcEEEcC-------CCCCCCcCceEEEECCEEEEEecccCCC--------ccCceEEEE
Q 016421 192 AGGSDKNGHVLKSAELYDSTTGRWEMLP-------SMHSPRRLCSGFFMDGKFYVIGGMSSPT--------VSLTCGEEF 256 (390)
Q Consensus 192 ~GG~~~~~~~~~~~~~yd~~t~~W~~~~-------~~~~~r~~~~~~~~~~~iyv~GG~~~~~--------~~~~~v~~y 256 (390)
|||....+.+.++++.+....-.|+.+. +.|.||.+|+...++++-|+|||..+.. .+++++|+.
T Consensus 97 FGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~l 176 (830)
T KOG4152|consen 97 FGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYIL 176 (830)
T ss_pred EccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEE
Confidence 9999887777787755544445677653 4567899999999999999999975421 357888888
Q ss_pred eCCCC----ceEEcc---CCCCCCCCcCCCCCEEEEE------CCEEEEEec----CCCeEEEEeCCCCceEEcc-----
Q 016421 257 DLETR----KWRKIE---GMYPNVNRAAQAPPLVAVV------DNQLYAVEY----LTNMVKKYDKLKNTWDVLG----- 314 (390)
Q Consensus 257 d~~~~----~W~~~~---~~~~~~~~~~~~~~~~~~~------~g~l~v~gg----~~~~v~~yd~~~~~W~~v~----- 314 (390)
++.-+ .|...- .+|. +|-.|.++.+ ..+||++|| .++++|.+|.++-.|.+..
T Consensus 177 eL~~Gsgvv~W~ip~t~Gv~P~-----pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~ 251 (830)
T KOG4152|consen 177 ELRPGSGVVAWDIPITYGVLPP-----PRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVA 251 (830)
T ss_pred EeccCCceEEEecccccCCCCC-----CcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCC
Confidence 87754 487542 3444 3444556655 347999997 4579999999999999854
Q ss_pred CCCccccCCCcceeEEEEeCCEEEEEcCCCCC---------C----CCeEEEeeecCCCCCCCCCCceEEecc------c
Q 016421 315 RLPVRADLSNGWGLAFKACGNELLVVGGQRGP---------E----GENVVLNSWCPKSGVNNGTLDWKVLAE------K 375 (390)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~---------~----~~~~~i~~y~~~~~~~~~~~~W~~~~~------~ 375 (390)
+||+.. |..+.+++++|||||+--- + ....++-|+++++ +.|..+-. .
T Consensus 252 PlPRSL-------Hsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt------~~W~tl~~d~~ed~t 318 (830)
T KOG4152|consen 252 PLPRSL-------HSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDT------MAWETLLMDTLEDNT 318 (830)
T ss_pred CCCccc-------ccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecc------hheeeeeeccccccc
Confidence 344332 5677899999999996411 1 1345567888888 89987632 1
Q ss_pred CccCeEEeeeeeecC
Q 016421 376 QHVGVFVYNCAVLGC 390 (390)
Q Consensus 376 p~~~~~~~~~~~~~~ 390 (390)
.+..|..+|.+.||+
T Consensus 319 iPR~RAGHCAvAigt 333 (830)
T KOG4152|consen 319 IPRARAGHCAVAIGT 333 (830)
T ss_pred cccccccceeEEecc
Confidence 245567777777774
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-17 Score=142.81 Aligned_cols=252 Identities=19% Similarity=0.264 Sum_probs=180.5
Q ss_pred ccEEEEEeC--CCeeEEEecC--CCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEccccc--------CCeEEEEECCC
Q 016421 97 EHWVYLVCD--PRGWEAFDPM--KKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELF--------DFAIWKYSLVF 164 (390)
Q Consensus 97 ~~~l~~~~~--~~~~~~~d~~--~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~--------~~~~~~yd~~t 164 (390)
...+|+..+ ..+++..|+. ...|+.++..|...... ...+..+++||+|||..- .+++|+|||.+
T Consensus 46 g~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rnq---a~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~ 122 (381)
T COG3055 46 GDTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGARNQ---AVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPST 122 (381)
T ss_pred cceEEEEeccCCccceehhhhcCCCCceEcccCCCccccc---chheeeCCeEEEeeccccCCCCCceEeeeeEEecCCC
Confidence 567888765 6788888887 45799999988754332 335678999999999541 26789999999
Q ss_pred CcEeecCC-CCCCCcceeeeeeCC-EEEEEeccCCCC---------------------------------CccceEEEEE
Q 016421 165 RSWMKCEG-MNHPRCLFGSGSLGS-IAIIAGGSDKNG---------------------------------HVLKSAELYD 209 (390)
Q Consensus 165 ~~W~~~~~-~~~~r~~~~~~~~~~-~lyv~GG~~~~~---------------------------------~~~~~~~~yd 209 (390)
++|..+.. .|.....+.++.+++ +||++||.+... ....++..||
T Consensus 123 nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~ 202 (381)
T COG3055 123 NSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYD 202 (381)
T ss_pred ChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccc
Confidence 99998865 344455667777776 999999964210 0245799999
Q ss_pred CCCCcEEEcCCCCC-CCcCceEEEECCEEEEEecccCCCccCceEEEEeCC--CCceEEccCCCCCCCCcC--CCCCEEE
Q 016421 210 STTGRWEMLPSMHS-PRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLE--TRKWRKIEGMYPNVNRAA--QAPPLVA 284 (390)
Q Consensus 210 ~~t~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~~~~~~--~~~~~~~ 284 (390)
|.++.|+.+...|. ++++.+.+.-++++.++-|.-.++-+...+..++.. ..+|..+.++|.+..... -.++...
T Consensus 203 p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G 282 (381)
T COG3055 203 PSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSG 282 (381)
T ss_pred cccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccc
Confidence 99999999987775 455654445577799998887666555566677766 457999988877543321 1122233
Q ss_pred EECCEEEEEec------------------------CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEE
Q 016421 285 VVDNQLYAVEY------------------------LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVV 340 (390)
Q Consensus 285 ~~~g~l~v~gg------------------------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~ 340 (390)
..++.+.+.|| ..+.|+.+| .+.|+.+..||..+. +|+ .+..++.||+|
T Consensus 283 ~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~----YG~-s~~~nn~vl~I 355 (381)
T COG3055 283 KSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLA----YGV-SLSYNNKVLLI 355 (381)
T ss_pred eeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCcc----ceE-EEecCCcEEEE
Confidence 45677777775 235788888 999999999998653 444 55789999999
Q ss_pred cCCCCCCCCeEEEeeecC
Q 016421 341 GGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 341 GG~~~~~~~~~~i~~y~~ 358 (390)
||..........++....
T Consensus 356 GGE~~~Gka~~~v~~l~~ 373 (381)
T COG3055 356 GGETSGGKATTRVYSLSW 373 (381)
T ss_pred ccccCCCeeeeeEEEEEE
Confidence 998877666666555433
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-15 Score=130.75 Aligned_cols=193 Identities=19% Similarity=0.288 Sum_probs=150.3
Q ss_pred ecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCC--CcEEEcCCCCC-CCcCceEEEECCEEEEEecccC
Q 016421 169 KCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTT--GRWEMLPSMHS-PRRLCSGFFMDGKFYVIGGMSS 245 (390)
Q Consensus 169 ~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~ 245 (390)
.+|++|.+...-+.+..++.+||--|..+. ..+..|++. ..|+++...|- +|.....++++++||++||...
T Consensus 29 ~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~-----afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk 103 (381)
T COG3055 29 QLPDLPVGFKNGAGALIGDTVYVGLGSAGT-----AFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGK 103 (381)
T ss_pred cCCCCCccccccccceecceEEEEeccCCc-----cceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeecccc
Confidence 457888887777777788999998885443 367777764 47999999886 5778888899999999999865
Q ss_pred CC----ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECC-EEEEEec-------------------------
Q 016421 246 PT----VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDN-QLYAVEY------------------------- 295 (390)
Q Consensus 246 ~~----~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g-~l~v~gg------------------------- 295 (390)
.. ...+++++||+++++|+.+....+.. ..++..+.+++ ++|++||
T Consensus 104 ~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~g----l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~ 179 (381)
T COG3055 104 SVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTG----LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDK 179 (381)
T ss_pred CCCCCceEeeeeEEecCCCChhheeccccccc----cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHH
Confidence 32 34678999999999999987654421 23445677777 8999986
Q ss_pred --------------CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCC
Q 016421 296 --------------LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSG 361 (390)
Q Consensus 296 --------------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~ 361 (390)
....+..|||++++|+.+...|.... +|.+++.-++++.+|.|...+.-++..++.++...
T Consensus 180 i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~----aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~- 254 (381)
T COG3055 180 IIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGN----AGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGG- 254 (381)
T ss_pred HHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCc----cCcceeecCCeEEEEcceecCCccccceeEEEecc-
Confidence 23578899999999999987776553 45666666888999999998888888899999875
Q ss_pred CCCCCCceEEecccCcc
Q 016421 362 VNNGTLDWKVLAEKQHV 378 (390)
Q Consensus 362 ~~~~~~~W~~~~~~p~~ 378 (390)
...+|..++.+|..
T Consensus 255 ---~~~~w~~l~~lp~~ 268 (381)
T COG3055 255 ---DNLKWLKLSDLPAP 268 (381)
T ss_pred ---CceeeeeccCCCCC
Confidence 44689999887743
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-11 Score=80.31 Aligned_cols=50 Identities=36% Similarity=0.642 Sum_probs=45.6
Q ss_pred CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCC
Q 016421 176 PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPR 225 (390)
Q Consensus 176 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r 225 (390)
+|..+++++++++||++||........+++++||+++++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 58889999999999999999875557899999999999999999999886
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.6e-11 Score=75.66 Aligned_cols=49 Identities=31% Similarity=0.474 Sum_probs=44.1
Q ss_pred CCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCC
Q 016421 224 PRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPN 272 (390)
Q Consensus 224 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 272 (390)
+|..+++++++++||++||........+++++||+.+++|+++++||.+
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence 5788999999999999999987555789999999999999999999873
|
|
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.9e-08 Score=85.34 Aligned_cols=198 Identities=10% Similarity=0.046 Sum_probs=118.5
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcce----eeeee-----CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCC-
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLF----GSGSL-----GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSP- 224 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~----~~~~~-----~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~- 224 (390)
..+.++||.|++|..+|+++.++... ....+ ..||..+...... .....+++|++.+++|+.+...+..
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr~~~~~~~~~ 92 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWRTIECSPPHH 92 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCccccccCCCCc
Confidence 57899999999999998755421111 11111 2366666543211 1345789999999999998743322
Q ss_pred CcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEE-ccCCCCCCCCcCCCCCEEEEECCEEEEEecCC--C--e
Q 016421 225 RRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRK-IEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT--N--M 299 (390)
Q Consensus 225 r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~--~--~ 299 (390)
......+.++|.||.+....... ....+..||+.+++|.+ ++ +|..... ......++.++|+|.++.... . +
T Consensus 93 ~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~-~P~~~~~-~~~~~~L~~~~G~L~~v~~~~~~~~~~ 169 (230)
T TIGR01640 93 PLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIP-LPCGNSD-SVDYLSLINYKGKLAVLKQKKDTNNFD 169 (230)
T ss_pred cccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeee-cCccccc-cccceEEEEECCEEEEEEecCCCCcEE
Confidence 11223778899999997543221 12368999999999996 44 3332110 112346788899999986422 2 4
Q ss_pred EEEEe-CCCCceEEccCCCc--cccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 300 VKKYD-KLKNTWDVLGRLPV--RADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 300 v~~yd-~~~~~W~~v~~~~~--~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
||+.+ ...+.|++.-.++. ............+..+|+|++..+.. ....+..||+++
T Consensus 170 IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~----~~~~~~~y~~~~ 229 (230)
T TIGR01640 170 LWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE----NPFYIFYYNVGE 229 (230)
T ss_pred EEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC----CceEEEEEeccC
Confidence 55553 44567998654442 11111001123345688988888641 122488999976
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.4e-11 Score=107.45 Aligned_cols=197 Identities=17% Similarity=0.169 Sum_probs=133.5
Q ss_pred CCCCcEeecCCC----------CCCCcceeeeeeC--CEEEEEeccCCCCCccceEEEEECCCCcEEEcC---CCCCCCc
Q 016421 162 LVFRSWMKCEGM----------NHPRCLFGSGSLG--SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP---SMHSPRR 226 (390)
Q Consensus 162 ~~t~~W~~~~~~----------~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~r~ 226 (390)
+.+..|.++++. |..|.+|.++.-. +-||+.||+++.. .+.++|.|+...+.|..+. ..|..|.
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs 314 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDTEGPGARS 314 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCCCCCcchh
Confidence 446678777542 4678889888764 4999999999865 5899999999999998874 4677899
Q ss_pred CceEEEE--CCEEEEEecccCC-----CccCceEEEEeCCCCceEEccCCCC-CCCCcCCCCCEEEEECCE--EEEEecC
Q 016421 227 LCSGFFM--DGKFYVIGGMSSP-----TVSLTCGEEFDLETRKWRKIEGMYP-NVNRAAQAPPLVAVVDNQ--LYAVEYL 296 (390)
Q Consensus 227 ~~~~~~~--~~~iyv~GG~~~~-----~~~~~~v~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~g~--l~v~gg~ 296 (390)
.|.++.. ..++|+.|.+-.. ....+++|+||..++.|..+.--.. ...++.-+.+++++.+.+ +||+||.
T Consensus 315 CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 315 CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred hhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCe
Confidence 9988865 4499999976331 1345789999999999997753222 122223456778888877 9999983
Q ss_pred --------CCeEEEEeCCCCceEEccCC-----CccccCCCcce--eEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 297 --------TNMVKKYDKLKNTWDVLGRL-----PVRADLSNGWG--LAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 297 --------~~~v~~yd~~~~~W~~v~~~-----~~~~~~~~~~~--~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
...++.||.....|..++.- +......+..| .-.+.-+..+|++||...... ..-.++|++..
T Consensus 395 ~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~E-l~L~f~y~I~~ 472 (723)
T KOG2437|consen 395 ILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTE-LNLFFSYDIDS 472 (723)
T ss_pred eccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceE-Eeehhcceecc
Confidence 35789999999999876521 11100001112 223344788999999763321 12244665443
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-10 Score=73.36 Aligned_cols=47 Identities=36% Similarity=0.606 Sum_probs=42.7
Q ss_pred CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCC
Q 016421 176 PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH 222 (390)
Q Consensus 176 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 222 (390)
+|..+++++++++||++||........+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 58899999999999999999886668999999999999999998876
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.5e-10 Score=72.04 Aligned_cols=47 Identities=30% Similarity=0.508 Sum_probs=42.3
Q ss_pred CCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCC
Q 016421 224 PRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMY 270 (390)
Q Consensus 224 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 270 (390)
+|..+++++++++||++||.+......+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 57889999999999999999886667899999999999999999876
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-09 Score=67.57 Aligned_cols=47 Identities=23% Similarity=0.436 Sum_probs=42.1
Q ss_pred CCEEEEEeccC-CCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE
Q 016421 186 GSIAIIAGGSD-KNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF 232 (390)
Q Consensus 186 ~~~lyv~GG~~-~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 232 (390)
+++||++||.. ......+++++||+.+++|++++++|.+|..|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 57999999998 344578999999999999999999999999999875
|
|
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.9e-09 Score=66.83 Aligned_cols=47 Identities=36% Similarity=0.511 Sum_probs=41.0
Q ss_pred CCcCceEEEECCEEEEEecc--cCCCccCceEEEEeCCCCceEEccCCC
Q 016421 224 PRRLCSGFFMDGKFYVIGGM--SSPTVSLTCGEEFDLETRKWRKIEGMY 270 (390)
Q Consensus 224 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~v~~yd~~~~~W~~~~~~~ 270 (390)
+|..|++++++++||++||. .......+++++||+.+++|+.+++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 57889999999999999999 444557889999999999999998764
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.6e-09 Score=66.59 Aligned_cols=47 Identities=26% Similarity=0.434 Sum_probs=40.9
Q ss_pred CCcceeeeeeCCEEEEEecc--CCCCCccceEEEEECCCCcEEEcCCCC
Q 016421 176 PRCLFGSGSLGSIAIIAGGS--DKNGHVLKSAELYDSTTGRWEMLPSMH 222 (390)
Q Consensus 176 ~r~~~~~~~~~~~lyv~GG~--~~~~~~~~~~~~yd~~t~~W~~~~~~~ 222 (390)
+|..|++++++++|||+||+ .......+++++||+++++|+.+++|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 58889999999999999999 333347899999999999999998775
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.3e-09 Score=67.57 Aligned_cols=47 Identities=34% Similarity=0.498 Sum_probs=31.8
Q ss_pred CCcCceEEEE-CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCC
Q 016421 224 PRRLCSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMY 270 (390)
Q Consensus 224 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 270 (390)
+|..|+++.+ +++||++||.+.....++++++||+.+++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 5888999988 6899999999886668999999999999999997776
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-09 Score=67.73 Aligned_cols=48 Identities=33% Similarity=0.536 Sum_probs=31.8
Q ss_pred CCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCC
Q 016421 176 PRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHS 223 (390)
Q Consensus 176 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~ 223 (390)
+|..|+++.+ +++||++||........+++++||+.+++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 5888999888 59999999998776679999999999999999988873
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.2e-07 Score=76.67 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=98.3
Q ss_pred EEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCC----CcEEEcC-CCCCCCcCceEE
Q 016421 157 IWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTT----GRWEMLP-SMHSPRRLCSGF 231 (390)
Q Consensus 157 ~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t----~~W~~~~-~~~~~r~~~~~~ 231 (390)
-..||+.+++++.+.......+...+..-+|.+.+.||.... ...+..|++.+ ..|.+.+ .|..+|.++++.
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 457999999999876543333333334448999999998652 35677888875 5798875 588999998888
Q ss_pred EE-CCEEEEEecccCCCccCceEEEEeCCCC--ceEEccCCCC--CCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCC
Q 016421 232 FM-DGKFYVIGGMSSPTVSLTCGEEFDLETR--KWRKIEGMYP--NVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKL 306 (390)
Q Consensus 232 ~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~--~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~ 306 (390)
.+ ||+++|+||.... ..+.+..... ....+..+.. ......-+......-+|+||+++.. .-.+||+.
T Consensus 125 ~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--~s~i~d~~ 197 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--GSIIYDYK 197 (243)
T ss_pred ECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--CcEEEeCC
Confidence 75 8999999998732 2233333221 1111111111 0000112233445568999999864 45678999
Q ss_pred CCce-EEccCCCcc
Q 016421 307 KNTW-DVLGRLPVR 319 (390)
Q Consensus 307 ~~~W-~~v~~~~~~ 319 (390)
++++ ..++.+|..
T Consensus 198 ~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 198 TNTVVRTLPDLPGG 211 (243)
T ss_pred CCeEEeeCCCCCCC
Confidence 9987 678888765
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-08 Score=63.55 Aligned_cols=47 Identities=38% Similarity=0.634 Sum_probs=41.1
Q ss_pred EEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECC
Q 016421 188 IAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDG 235 (390)
Q Consensus 188 ~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~ 235 (390)
+||++||.... ...+++++||+.+++|+.+++|+.+|..++++.++|
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998653 457899999999999999999999999998888765
|
|
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.6e-06 Score=70.85 Aligned_cols=198 Identities=12% Similarity=0.033 Sum_probs=115.2
Q ss_pred CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCC-----EEEEEccc---ccCCeEEEEECCCCcEeecCCCCCC-C
Q 016421 107 RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGS-----ELLVFGRE---LFDFAIWKYSLVFRSWMKCEGMNHP-R 177 (390)
Q Consensus 107 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-----~iy~~Gg~---~~~~~~~~yd~~t~~W~~~~~~~~~-r 177 (390)
..+...||.+++|..+|+.+.+..........+..+. +|..+... .....+.+|+..+++|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 5667899999999999865432111111012222221 44433321 1235788999999999998643321 1
Q ss_pred cceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEE-cCCCCCCC----cCceEEEECCEEEEEecccCCCccCce
Q 016421 178 CLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM-LPSMHSPR----RLCSGFFMDGKFYVIGGMSSPTVSLTC 252 (390)
Q Consensus 178 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~ 252 (390)
.....+.++|.+|.+...... .....+..||..+.+|+. ++ +|... .....+.++|++.++....... .-.
T Consensus 94 ~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~ 169 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKDTN--NFD 169 (230)
T ss_pred ccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCCCC--cEE
Confidence 112266779999998754321 112369999999999995 53 34332 2345667899999887543211 235
Q ss_pred EEEEe-CCCCceEEccCCCC--CCCCcCCCCCEEEEECCEEEEEecC--CCeEEEEeCCCC
Q 016421 253 GEEFD-LETRKWRKIEGMYP--NVNRAAQAPPLVAVVDNQLYAVEYL--TNMVKKYDKLKN 308 (390)
Q Consensus 253 v~~yd-~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~~g~l~v~gg~--~~~v~~yd~~~~ 308 (390)
+++.+ -....|+++-.++. .........+..+..+|+|++.... ..-+..||+.++
T Consensus 170 IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 170 LWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence 66654 44567997654432 1111011123345677888887653 223889998875
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-07 Score=60.00 Aligned_cols=47 Identities=30% Similarity=0.514 Sum_probs=38.6
Q ss_pred CCEEEEEeccc-CCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE
Q 016421 234 DGKFYVIGGMS-SPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV 285 (390)
Q Consensus 234 ~~~iyv~GG~~-~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 285 (390)
+++|||+||.+ .....++++++||+.+++|+++.++|. +|..+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~-----~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP-----PRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC-----CccceEEEE
Confidence 57999999998 345678999999999999999988877 556666654
|
|
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.5e-05 Score=69.90 Aligned_cols=38 Identities=5% Similarity=0.035 Sum_probs=34.4
Q ss_pred CCCCChHHHHHHHhhhcccc-chhhhHhhcHHHHHHhhc
Q 016421 46 LLPGLVDDVALNCLAFACTS-DYASLLFINKRFHKLIKS 83 (390)
Q Consensus 46 ~~~~LP~dl~~~iL~rlp~~-~l~~~~~V~k~w~~l~~s 83 (390)
.|+.||+||+..|..+||.. ++.++|+||+.||+.+..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 58999999999999999755 899999999999987764
|
|
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.3e-08 Score=61.40 Aligned_cols=42 Identities=17% Similarity=0.432 Sum_probs=36.4
Q ss_pred CCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCchh
Q 016421 47 LPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYG 88 (390)
Q Consensus 47 ~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~~ 88 (390)
|..||+|++.+||.+||..++.++..|||+|+.++.++.+.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 578999999999999999999999999999999998875543
|
|
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-07 Score=85.88 Aligned_cols=183 Identities=13% Similarity=0.091 Sum_probs=120.6
Q ss_pred CCceeeCCCCCC------CcccCCCCeeEEEe--CCEEEEEccccc---CCeEEEEECCCCcEeec---CCCCCCCccee
Q 016421 116 KKKWMALPKIPC------DECFNHADKESLAV--GSELLVFGRELF---DFAIWKYSLVFRSWMKC---EGMNHPRCLFG 181 (390)
Q Consensus 116 ~~~W~~l~~~p~------~~~~~~~~~~~~~~--~~~iy~~Gg~~~---~~~~~~yd~~t~~W~~~---~~~~~~r~~~~ 181 (390)
+.+|.++++... .....+.++..+.. ++.||+.||.+. ..++|.|+...++|..+ ...|..|.+|.
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR 317 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHR 317 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhh
Confidence 557877654331 11112233444444 459999999763 35789999999999776 34789999999
Q ss_pred eeeeCC--EEEEEeccCCCC-----CccceEEEEECCCCcEEEcCC------CCCCCcCceEEEECCE--EEEEecccCC
Q 016421 182 SGSLGS--IAIIAGGSDKNG-----HVLKSAELYDSTTGRWEMLPS------MHSPRRLCSGFFMDGK--FYVIGGMSSP 246 (390)
Q Consensus 182 ~~~~~~--~lyv~GG~~~~~-----~~~~~~~~yd~~t~~W~~~~~------~~~~r~~~~~~~~~~~--iyv~GG~~~~ 246 (390)
++.... ++|+.|-+-+.+ ...+++|+||..++.|.-+.- -|...+.|.+++.+.+ |||+||+...
T Consensus 318 MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~ 397 (723)
T KOG2437|consen 318 MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILT 397 (723)
T ss_pred hhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeecc
Confidence 987755 999999764322 145789999999999987642 2344567888887766 9999998642
Q ss_pred --CccCceEEEEeCCCCceEEccCCCC---CC--CCcCCCCCEE--EEECCEEEEEecCCC
Q 016421 247 --TVSLTCGEEFDLETRKWRKIEGMYP---NV--NRAAQAPPLV--AVVDNQLYAVEYLTN 298 (390)
Q Consensus 247 --~~~~~~v~~yd~~~~~W~~~~~~~~---~~--~~~~~~~~~~--~~~~g~l~v~gg~~~ 298 (390)
......++.||.....|..+..-.. +. ....|.++.+ ..-+..+|++||...
T Consensus 398 ~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s 458 (723)
T KOG2437|consen 398 CNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRS 458 (723)
T ss_pred CCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCccc
Confidence 2345678999999999987642111 00 0012222222 234567899887443
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-05 Score=70.86 Aligned_cols=93 Identities=10% Similarity=0.066 Sum_probs=62.9
Q ss_pred eEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEE
Q 016421 252 CGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK 331 (390)
Q Consensus 252 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~ 331 (390)
++-++++.|..+... +.. .+.+.+...++|++.+-|.+-+.+..||.+.+.--++-.--... ..++
T Consensus 341 TikvW~~st~efvRt--l~g-----HkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeL-------vRci 406 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRT--LNG-----HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL-------VRCI 406 (499)
T ss_pred eEEEEeccceeeehh--hhc-----ccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHh-------hhhe
Confidence 455677776655432 221 22344566789999999888899999999988765543222111 2355
Q ss_pred EeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCC
Q 016421 332 ACGNELLVVGGQRGPEGENVVLNSWCPKSGVNN 364 (390)
Q Consensus 332 ~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~ 364 (390)
-.+++=+|-||+++ .|.+||..++.++
T Consensus 407 RFd~krIVSGaYDG------kikvWdl~aaldp 433 (499)
T KOG0281|consen 407 RFDNKRIVSGAYDG------KIKVWDLQAALDP 433 (499)
T ss_pred eecCceeeeccccc------eEEEEecccccCC
Confidence 67888889999886 5889999887666
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-06 Score=79.18 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=68.5
Q ss_pred CCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEc---CCCCCCCcCceEEEE-CCEEEEEecccCCCcc
Q 016421 174 NHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML---PSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVS 249 (390)
Q Consensus 174 ~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 249 (390)
..++..++++.+++++||+||.+..+...+.+++||..|++|... +..|.+|.+|+++++ +++|+|+++.....
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~-- 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD-- 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence 357888999999999999999877554678999999999999774 567889999999988 68999998765532
Q ss_pred CceEEEEeCCC
Q 016421 250 LTCGEEFDLET 260 (390)
Q Consensus 250 ~~~v~~yd~~~ 260 (390)
.++|.....|
T Consensus 100 -~~~w~l~~~t 109 (398)
T PLN02772 100 -DSIWFLEVDT 109 (398)
T ss_pred -cceEEEEcCC
Confidence 5666666655
|
|
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.5e-07 Score=57.43 Aligned_cols=47 Identities=34% Similarity=0.559 Sum_probs=37.6
Q ss_pred EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECC
Q 016421 236 KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDN 288 (390)
Q Consensus 236 ~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g 288 (390)
+||++||.... ...+++++||+.+++|+.+++|+. .|..+++++++|
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~-----~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPT-----PRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCC-----ccccceEEEeCC
Confidence 48999998653 357889999999999999999988 455556777664
|
|
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-06 Score=53.39 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=35.7
Q ss_pred CCCCCcceeeeeeCCEEEEEeccCC-CCCccceEEEEECCCC
Q 016421 173 MNHPRCLFGSGSLGSIAIIAGGSDK-NGHVLKSAELYDSTTG 213 (390)
Q Consensus 173 ~~~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~yd~~t~ 213 (390)
+|.+|..|++++++++||++||... .....+++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4788999999999999999999984 5567899999998763
|
|
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.4e-06 Score=52.48 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=35.2
Q ss_pred CCCCCcCceEEEECCEEEEEecccC-CCccCceEEEEeCCC
Q 016421 221 MHSPRRLCSGFFMDGKFYVIGGMSS-PTVSLTCGEEFDLET 260 (390)
Q Consensus 221 ~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~~ 260 (390)
+|.+|..|+++.++++||++||... .....+++++||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4788999999999999999999984 556789999999876
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0022 Score=60.85 Aligned_cols=235 Identities=12% Similarity=0.101 Sum_probs=134.5
Q ss_pred ccccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCcc----cCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--
Q 016421 95 IVEHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDEC----FNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS-- 166 (390)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~----~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~-- 166 (390)
..++.+|+......+.++|..+. .|..-..-..... ........+..++.||+.+. ...++.+|..+++
T Consensus 67 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---~g~l~ald~~tG~~~ 143 (394)
T PRK11138 67 VAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---KGQVYALNAEDGEVA 143 (394)
T ss_pred EECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC---CCEEEEEECCCCCCc
Confidence 34778888876778899998755 5864221110000 00111224556788887543 3478999998764
Q ss_pred EeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCCC--CcCceEEEECCEEEEEec
Q 016421 167 WMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHSP--RRLCSGFFMDGKFYVIGG 242 (390)
Q Consensus 167 W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~--r~~~~~~~~~~~iyv~GG 242 (390)
|+.-.. .. ...+.++.++.+|+..+ ...+..+|+.+++ |+.-...+.. +...+-+..++.+|+..+
T Consensus 144 W~~~~~--~~-~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~ 213 (394)
T PRK11138 144 WQTKVA--GE-ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD 213 (394)
T ss_pred ccccCC--Cc-eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC
Confidence 865322 11 11223455788887532 2358999999886 8774332221 222233456777777533
Q ss_pred ccCCCccCceEEEEeCCCC--ceEEccCCCCCCCC---cCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc--eEEccC
Q 016421 243 MSSPTVSLTCGEEFDLETR--KWRKIEGMYPNVNR---AAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT--WDVLGR 315 (390)
Q Consensus 243 ~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~---~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~--W~~v~~ 315 (390)
. ..+..+|+.++ .|+.-...+..... ........++.++.+|+.+. .+.++++|+.+++ |+.-
T Consensus 214 ~-------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~g~l~ald~~tG~~~W~~~-- 283 (394)
T PRK11138 214 N-------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-NGNLVALDLRSGQIVWKRE-- 283 (394)
T ss_pred C-------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-CCeEEEEECCCCCEEEeec--
Confidence 1 24677888876 48642221211000 00011223457899998763 4689999998874 8762
Q ss_pred CCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEE
Q 016421 316 LPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKV 371 (390)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~ 371 (390)
.... ...+..+++||+..... .++++|+++ +...|+.
T Consensus 284 ~~~~--------~~~~~~~~~vy~~~~~g-------~l~ald~~t----G~~~W~~ 320 (394)
T PRK11138 284 YGSV--------NDFAVDGGRIYLVDQND-------RVYALDTRG----GVELWSQ 320 (394)
T ss_pred CCCc--------cCcEEECCEEEEEcCCC-------eEEEEECCC----CcEEEcc
Confidence 1111 12345789999987432 588999987 4456864
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.3e-05 Score=67.77 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=94.8
Q ss_pred ceEEEEECCCCcEEEcCCCCCCCcCceE-EEECCEEEEEecccCCCccCceEEEEeCCC----CceEEccC-CCCCCCCc
Q 016421 203 KSAELYDSTTGRWEMLPSMHSPRRLCSG-FFMDGKFYVIGGMSSPTVSLTCGEEFDLET----RKWRKIEG-MYPNVNRA 276 (390)
Q Consensus 203 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~----~~W~~~~~-~~~~~~~~ 276 (390)
.....||+.+++++.+.- .......+. ..-||++.+.||...+ ...+..|++.+ ..|.+... |..
T Consensus 46 a~s~~yD~~tn~~rpl~v-~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~~----- 116 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTV-QTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQS----- 116 (243)
T ss_pred EEEEEEecCCCcEEeccC-CCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcccccC-----
Confidence 345689999999998753 333222233 3458999999998653 34566788765 67988764 665
Q ss_pred CCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCC------ceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCC
Q 016421 277 AQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKN------TWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGE 349 (390)
Q Consensus 277 ~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~------~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~ 349 (390)
.|..+.+.. -+|+++|+||..+..+.|.|... .|..+........... +=...+.-+|+||+++...
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nl-YP~~~llPdG~lFi~an~~----- 190 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNL-YPFVHLLPDGNLFIFANRG----- 190 (243)
T ss_pred CCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCcccc-CceEEEcCCCCEEEEEcCC-----
Confidence 455555554 58999999998766555655421 1222222111100000 1123345589999999854
Q ss_pred eEEEeeecCCCCCCCCCCce-EEecccCcc
Q 016421 350 NVVLNSWCPKSGVNNGTLDW-KVLAEKQHV 378 (390)
Q Consensus 350 ~~~i~~y~~~~~~~~~~~~W-~~~~~~p~~ 378 (390)
-.+||+.+ +++ +.++.+|..
T Consensus 191 ---s~i~d~~~------n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 191 ---SIIYDYKT------NTVVRTLPDLPGG 211 (243)
T ss_pred ---cEEEeCCC------CeEEeeCCCCCCC
Confidence 34789988 565 788888853
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Probab=98.20 E-value=1e-06 Score=53.97 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=36.0
Q ss_pred ChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCchh
Q 016421 50 LVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYG 88 (390)
Q Consensus 50 LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~~ 88 (390)
||+|++.+|+.+|+..++.+++.|||+|+.++.++.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999998876653
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0032 Score=59.73 Aligned_cols=222 Identities=15% Similarity=0.122 Sum_probs=129.1
Q ss_pred ccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--EeecCC
Q 016421 97 EHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEG 172 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~ 172 (390)
++.+|+......++++|..+. .|..-. +.... ...+..++.+|+..+ ...++.+|+.+++ |+.-..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~-----ssP~v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKV--AGEAL-----SRPVVSDGLVLVHTS---NGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccC--CCcee-----cCCEEECCEEEEECC---CCEEEEEEccCCCEeeeecCC
Confidence 567777655667899998755 586432 11110 112445778887543 3478999998876 766433
Q ss_pred CCC--CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCCC-----C---cCceEEEECCEEEEE
Q 016421 173 MNH--PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHSP-----R---RLCSGFFMDGKFYVI 240 (390)
Q Consensus 173 ~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~-----r---~~~~~~~~~~~iyv~ 240 (390)
.+. .+...+.++.++.+|+..+ ...+..+|+.+++ |+.-...+.. + ...+-++.++.+|+.
T Consensus 190 ~~~~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~ 262 (394)
T PRK11138 190 VPSLTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYAL 262 (394)
T ss_pred CCcccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEE
Confidence 221 1222233345677766432 1347788888875 8652211211 1 112334678999986
Q ss_pred ecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc--eEEccCC
Q 016421 241 GGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT--WDVLGRL 316 (390)
Q Consensus 241 GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~--W~~v~~~ 316 (390)
+. ...++++|+.+++ |+.-. .. . ...+..+++||+... .+.++++|+.+.+ |+.-. +
T Consensus 263 ~~-------~g~l~ald~~tG~~~W~~~~--~~-----~---~~~~~~~~~vy~~~~-~g~l~ald~~tG~~~W~~~~-~ 323 (394)
T PRK11138 263 AY-------NGNLVALDLRSGQIVWKREY--GS-----V---NDFAVDGGRIYLVDQ-NDRVYALDTRGGVELWSQSD-L 323 (394)
T ss_pred Ec-------CCeEEEEECCCCCEEEeecC--CC-----c---cCcEEECCEEEEEcC-CCeEEEEECCCCcEEEcccc-c
Confidence 42 1357889998864 87521 11 0 124567899998763 4689999998764 86421 1
Q ss_pred CccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEE
Q 016421 317 PVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKV 371 (390)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~ 371 (390)
.. .. . .+.+..+++||+... ++ .++++|+.+ ++..|+.
T Consensus 324 ~~-~~----~-~sp~v~~g~l~v~~~-~G------~l~~ld~~t----G~~~~~~ 361 (394)
T PRK11138 324 LH-RL----L-TAPVLYNGYLVVGDS-EG------YLHWINRED----GRFVAQQ 361 (394)
T ss_pred CC-Cc----c-cCCEEECCEEEEEeC-CC------EEEEEECCC----CCEEEEE
Confidence 11 11 1 223457899987643 22 588899888 4556764
|
|
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.7e-07 Score=58.81 Aligned_cols=41 Identities=27% Similarity=0.473 Sum_probs=34.8
Q ss_pred CCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCch
Q 016421 47 LPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLY 87 (390)
Q Consensus 47 ~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~ 87 (390)
|..||+|++.+|+.+|+..++..++.|||+|++++.+..+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~ 43 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLW 43 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCcc
Confidence 56899999999999999999999999999999999886654
|
This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B. |
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.5e-05 Score=70.21 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=59.4
Q ss_pred CCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEecC---CC
Q 016421 223 SPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEYL---TN 298 (390)
Q Consensus 223 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg~---~~ 298 (390)
.++..++++.+++++||+||.+......+.+++||..+++|....-....+ .+|-++.++++ +++|+|+++. ..
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P--~~r~GhSa~v~~~~rilv~~~~~~~~~ 100 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGP--KPCKGYSAVVLNKDRILVIKKGSAPDD 100 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCC--CCCCcceEEEECCceEEEEeCCCCCcc
Confidence 367778999999999999998775435788999999999998754322111 14556667766 6899999743 24
Q ss_pred eEEEEeCCC
Q 016421 299 MVKKYDKLK 307 (390)
Q Consensus 299 ~v~~yd~~~ 307 (390)
++|.....|
T Consensus 101 ~~w~l~~~t 109 (398)
T PLN02772 101 SIWFLEVDT 109 (398)
T ss_pred ceEEEEcCC
Confidence 566665444
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0072 Score=52.73 Aligned_cols=192 Identities=18% Similarity=0.161 Sum_probs=113.4
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCc--EeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR-- 214 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-- 214 (390)
+..++.+|+.. ....++.+|+.+++ |+.-. +.+.. ......++.+|+..+ ...+..+|..+++
T Consensus 33 ~~~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~--~~~~~-~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~ 99 (238)
T PF13360_consen 33 VPDGGRVYVAS---GDGNLYALDAKTGKVLWRFDL--PGPIS-GAPVVDGGRVYVGTS-------DGSLYALDAKTGKVL 99 (238)
T ss_dssp EEETTEEEEEE---TTSEEEEEETTTSEEEEEEEC--SSCGG-SGEEEETTEEEEEET-------TSEEEEEETTTSCEE
T ss_pred EEeCCEEEEEc---CCCEEEEEECCCCCEEEEeec--ccccc-ceeeecccccccccc-------eeeeEecccCCccee
Confidence 34688888874 35689999998886 65432 22222 224667899988862 1368999988885
Q ss_pred EE-EcCCCCCC--CcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCC---cCCCCCEEEEE
Q 016421 215 WE-MLPSMHSP--RRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNR---AAQAPPLVAVV 286 (390)
Q Consensus 215 W~-~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~---~~~~~~~~~~~ 286 (390)
|+ .....+.. .......+.++.+|+... ...+..+|+++++ |..-...+..... ........+..
T Consensus 100 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (238)
T PF13360_consen 100 WSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS 172 (238)
T ss_dssp EEEEE-SSCTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC
T ss_pred eeeccccccccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE
Confidence 98 44332222 223344455777777643 3457889998775 7654333321110 00011223445
Q ss_pred CCEEEEEecCCCeEEEEeCCCCc--eEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCC
Q 016421 287 DNQLYAVEYLTNMVKKYDKLKNT--WDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNN 364 (390)
Q Consensus 287 ~g~l~v~gg~~~~v~~yd~~~~~--W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~ 364 (390)
++.+|+..+... +..+|..+++ |+.. +.... ......++.||+.. .++ .++++|+.+
T Consensus 173 ~~~v~~~~~~g~-~~~~d~~tg~~~w~~~--~~~~~-------~~~~~~~~~l~~~~-~~~------~l~~~d~~t---- 231 (238)
T PF13360_consen 173 DGRVYVSSGDGR-VVAVDLATGEKLWSKP--ISGIY-------SLPSVDGGTLYVTS-SDG------RLYALDLKT---- 231 (238)
T ss_dssp TTEEEEECCTSS-EEEEETTTTEEEEEEC--SS-EC-------ECEECCCTEEEEEE-TTT------EEEEEETTT----
T ss_pred CCEEEEEcCCCe-EEEEECCCCCEEEEec--CCCcc-------CCceeeCCEEEEEe-CCC------EEEEEECCC----
Confidence 688888865444 5566999987 8443 22111 11345678888888 332 689999999
Q ss_pred CCCceEE
Q 016421 365 GTLDWKV 371 (390)
Q Consensus 365 ~~~~W~~ 371 (390)
++..|+.
T Consensus 232 G~~~W~~ 238 (238)
T PF13360_consen 232 GKVVWQQ 238 (238)
T ss_dssp TEEEEEE
T ss_pred CCEEeEC
Confidence 5667864
|
... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.025 Score=53.33 Aligned_cols=221 Identities=18% Similarity=0.187 Sum_probs=121.5
Q ss_pred ccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--EeecCC
Q 016421 97 EHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEG 172 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~ 172 (390)
...+|+......++++|+.+. .|..-. +.... ...+..++.+|+..+ ...++.+|+.+++ |+.-..
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~-----~~p~v~~~~v~v~~~---~g~l~a~d~~tG~~~W~~~~~ 174 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKL--SSEVL-----SPPLVANGLVVVRTN---DGRLTALDAATGERLWTYSRV 174 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeecc--Cceee-----cCCEEECCEEEEECC---CCeEEEEEcCCCceeeEEccC
Confidence 456666555567788887654 475422 11100 112334667776543 3568899998764 765322
Q ss_pred CCC--CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCCC-----C---cCceEEEECCEEEEE
Q 016421 173 MNH--PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHSP-----R---RLCSGFFMDGKFYVI 240 (390)
Q Consensus 173 ~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~-----r---~~~~~~~~~~~iyv~ 240 (390)
.+. .+.....+..++.+|+ |..+ ..+..+|+.+++ |+.-...+.. + ...+.+..++.+|+.
T Consensus 175 ~~~~~~~~~~sp~~~~~~v~~-~~~~------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~ 247 (377)
T TIGR03300 175 TPALTLRGSASPVIADGGVLV-GFAG------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAV 247 (377)
T ss_pred CCceeecCCCCCEEECCEEEE-ECCC------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEE
Confidence 221 1222233445665554 3321 357889998874 8642211111 0 112334568888886
Q ss_pred ecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCC--ceEEccCC
Q 016421 241 GGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKN--TWDVLGRL 316 (390)
Q Consensus 241 GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~--~W~~v~~~ 316 (390)
.. ...+++||+.+++ |..-. .. ....++.++++|+.. ..+.++++|..++ .|+.-. +
T Consensus 248 ~~-------~g~l~a~d~~tG~~~W~~~~--~~--------~~~p~~~~~~vyv~~-~~G~l~~~d~~tG~~~W~~~~-~ 308 (377)
T TIGR03300 248 SY-------QGRVAALDLRSGRVLWKRDA--SS--------YQGPAVDDNRLYVTD-ADGVVVALDRRSGSELWKNDE-L 308 (377)
T ss_pred Ec-------CCEEEEEECCCCcEEEeecc--CC--------ccCceEeCCEEEEEC-CCCeEEEEECCCCcEEEcccc-c
Confidence 42 2357889998764 76421 11 112446788988875 3468999999876 486521 2
Q ss_pred CccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceE
Q 016421 317 PVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWK 370 (390)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~ 370 (390)
.... . ...+..+++||+.. .++ .++++|+++ ++..|+
T Consensus 309 ~~~~-----~-ssp~i~g~~l~~~~-~~G------~l~~~d~~t----G~~~~~ 345 (377)
T TIGR03300 309 KYRQ-----L-TAPAVVGGYLVVGD-FEG------YLHWLSRED----GSFVAR 345 (377)
T ss_pred cCCc-----c-ccCEEECCEEEEEe-CCC------EEEEEECCC----CCEEEE
Confidence 1111 1 12234678888754 222 588899887 445564
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.04 Score=51.90 Aligned_cols=227 Identities=17% Similarity=0.111 Sum_probs=127.2
Q ss_pred cccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--EeecC
Q 016421 96 VEHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCE 171 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~ 171 (390)
.++.+|+......+++||+.+. .|..-..-.. ....+..++.+|+.+. ...++.+|+.+++ |+.-.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~-------~~~p~v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~ 133 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERL-------SGGVGADGGLVFVGTE---KGEVIALDAEDGKELWRAKL 133 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCc-------ccceEEcCCEEEEEcC---CCEEEEEECCCCcEeeeecc
Confidence 4677887766678999998755 4754221111 0123445677776543 3578999987765 76532
Q ss_pred CCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCC--CCcCceEEEECCEEEEEecccCCC
Q 016421 172 GMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHS--PRRLCSGFFMDGKFYVIGGMSSPT 247 (390)
Q Consensus 172 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~ 247 (390)
. .. .....+..++.+|+..+ ...+..+|+.+++ |+.-...+. .+...+.+..++.+|+. ..
T Consensus 134 ~--~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~-~~---- 198 (377)
T TIGR03300 134 S--SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVG-FA---- 198 (377)
T ss_pred C--ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEE-CC----
Confidence 1 11 11223345777777532 2348899998875 876432221 12223345567766543 22
Q ss_pred ccCceEEEEeCCCC--ceEEccCCCCCCCCc---CCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc--eEEccCCCccc
Q 016421 248 VSLTCGEEFDLETR--KWRKIEGMYPNVNRA---AQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT--WDVLGRLPVRA 320 (390)
Q Consensus 248 ~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~---~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~--W~~v~~~~~~~ 320 (390)
...+..+|+.++ .|+.-...+...... .......++.++.+|+.+ ..+.+++||+++++ |..-. +.
T Consensus 199 --~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~-~~g~l~a~d~~tG~~~W~~~~--~~-- 271 (377)
T TIGR03300 199 --GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVS-YQGRVAALDLRSGRVLWKRDA--SS-- 271 (377)
T ss_pred --CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEE-cCCEEEEEECCCCcEEEeecc--CC--
Confidence 125778998776 476432211110000 001122345678888865 34689999998764 86631 11
Q ss_pred cCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEE
Q 016421 321 DLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKV 371 (390)
Q Consensus 321 ~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~ 371 (390)
. ...+..+++||+..... .++++|+.+ +...|+.
T Consensus 272 -----~-~~p~~~~~~vyv~~~~G-------~l~~~d~~t----G~~~W~~ 305 (377)
T TIGR03300 272 -----Y-QGPAVDDNRLYVTDADG-------VVVALDRRS----GSELWKN 305 (377)
T ss_pred -----c-cCceEeCCEEEEECCCC-------eEEEEECCC----CcEEEcc
Confidence 0 12345689999876321 588999877 4456865
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.024 Score=49.37 Aligned_cols=182 Identities=19% Similarity=0.207 Sum_probs=109.8
Q ss_pred cccEEEEEeCCCeeEEEecCCCc--eeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--Ee-ec
Q 016421 96 VEHWVYLVCDPRGWEAFDPMKKK--WMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--WM-KC 170 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~~--W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~-~~ 170 (390)
.+..+|+......++++|+.+.+ |..-. +.+... ..+..++.+|+... .+.++.+|..+++ |+ ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~-----~~~~~~~~v~v~~~---~~~l~~~d~~tG~~~W~~~~ 104 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISG-----APVVDGGRVYVGTS---DGSLYALDAKTGKVLWSIYL 104 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGS-----GEEEETTEEEEEET---TSEEEEEETTTSCEEEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccc-----eeeecccccccccc---eeeeEecccCCcceeeeecc
Confidence 46777877778899999997664 65432 221111 13567888888763 2388999988775 87 34
Q ss_pred CCCCCC--CcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCCCCc--------CceEEEECCEEE
Q 016421 171 EGMNHP--RCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHSPRR--------LCSGFFMDGKFY 238 (390)
Q Consensus 171 ~~~~~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~--------~~~~~~~~~~iy 238 (390)
...+.. .........++.+|+... ...+..+|+.+++ |+.-...+.... ....+..++.+|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (238)
T PF13360_consen 105 TSSPPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVY 177 (238)
T ss_dssp -SSCTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEE
T ss_pred ccccccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEE
Confidence 332222 222334445777777643 3458999999886 766433332111 122233468888
Q ss_pred EEecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc--eE
Q 016421 239 VIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT--WD 311 (390)
Q Consensus 239 v~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~--W~ 311 (390)
+..+... +..+|..+++ |+.. +.. ........++.||+.. ..+.+.++|+.+++ |+
T Consensus 178 ~~~~~g~-------~~~~d~~tg~~~w~~~--~~~-------~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 178 VSSGDGR-------VVAVDLATGEKLWSKP--ISG-------IYSLPSVDGGTLYVTS-SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EECCTSS-------EEEEETTTTEEEEEEC--SS--------ECECEECCCTEEEEEE-TTTEEEEEETTTTEEEEE
T ss_pred EEcCCCe-------EEEEECCCCCEEEEec--CCC-------ccCCceeeCCEEEEEe-CCCEEEEEECCCCCEEeE
Confidence 8754321 4556999987 8433 211 0111456678888887 67899999999985 65
|
... |
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.003 Score=58.46 Aligned_cols=124 Identities=22% Similarity=0.275 Sum_probs=79.2
Q ss_pred eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccC----ceEEEE--eC
Q 016421 185 LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSL----TCGEEF--DL 258 (390)
Q Consensus 185 ~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~----~~v~~y--d~ 258 (390)
.+++|+.++.. ..+.+||..+..-...|.++.+.....++.++++||++.......... ..++++ ++
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~ 147 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRP 147 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccc
Confidence 58899988553 237899999999888888888776677778899999998664321110 144444 42
Q ss_pred --------CCCceEEccCCCCCCCCcCC--CCCEEEEE-CCEEEE-EecCCCeEEEEeCCCCceEEccC
Q 016421 259 --------ETRKWRKIEGMYPNVNRAAQ--APPLVAVV-DNQLYA-VEYLTNMVKKYDKLKNTWDVLGR 315 (390)
Q Consensus 259 --------~~~~W~~~~~~~~~~~~~~~--~~~~~~~~-~g~l~v-~gg~~~~v~~yd~~~~~W~~v~~ 315 (390)
..-.|..+++.|........ ...+-+++ +..|+| +.+.....+.||.++.+|+++..
T Consensus 148 ~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 148 PPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGD 216 (342)
T ss_pred ccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccc
Confidence 12257777664432211100 02233455 556666 43322469999999999999974
|
|
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0046 Score=57.22 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=81.6
Q ss_pred EEEe-CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCc------cceEEEEEC
Q 016421 138 SLAV-GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHV------LKSAELYDS 210 (390)
Q Consensus 138 ~~~~-~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~------~~~~~~yd~ 210 (390)
.+++ +++|+..+.. ..+.+||..|..-...|.++.+.....++.++++||++......... .-++..|++
T Consensus 71 F~al~gskIv~~d~~---~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~ 147 (342)
T PF07893_consen 71 FFALHGSKIVAVDQS---GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRP 147 (342)
T ss_pred EEEecCCeEEEEcCC---CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccc
Confidence 3444 8888888654 35789999999998888887777777777889999999876432211 223334442
Q ss_pred --------CCCcEEEcCCCCCCCcC-------ceEEEE-CCEEEEE-ecccCCCccCceEEEEeCCCCceEEccCC
Q 016421 211 --------TTGRWEMLPSMHSPRRL-------CSGFFM-DGKFYVI-GGMSSPTVSLTCGEEFDLETRKWRKIEGM 269 (390)
Q Consensus 211 --------~t~~W~~~~~~~~~r~~-------~~~~~~-~~~iyv~-GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 269 (390)
.+-.|+.+++.|..+.. .+-+++ +..|+|- .+.. ...+.||+.+.+|+.+.+.
T Consensus 148 ~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~~W~~~GdW 217 (342)
T PF07893_consen 148 PPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESHEWRKHGDW 217 (342)
T ss_pred ccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCcceeeccce
Confidence 22358888876654332 233455 5577773 2211 2478899999999998753
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.012 Score=51.92 Aligned_cols=205 Identities=14% Similarity=0.096 Sum_probs=112.6
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.+|+.. .....++++++.++.-....... ..+++.. ++.+|+... ....++|+.+++++.+.
T Consensus 11 ~g~l~~~D--~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 11 DGRLYWVD--IPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS--------GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp TTEEEEEE--TTTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET--------TCEEEEETTTTEEEEEE
T ss_pred CCEEEEEE--cCCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc--------CceEEEecCCCcEEEEe
Confidence 46666653 23468999999998765543322 2334443 688888854 22466799999998876
Q ss_pred CCCC---C--CcCceEEEECCEEEEEecccCCCccC--ceEEEEeCCCCceEEccC-CCCCCCCcCCCCCEEEEE-CC-E
Q 016421 220 SMHS---P--RRLCSGFFMDGKFYVIGGMSSPTVSL--TCGEEFDLETRKWRKIEG-MYPNVNRAAQAPPLVAVV-DN-Q 289 (390)
Q Consensus 220 ~~~~---~--r~~~~~~~~~~~iyv~GG~~~~~~~~--~~v~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~-~g-~ 289 (390)
..+. + +.+-.++.-+|+||+-.-........ ..++++++. .+...+.. +..+ ..++.. ++ .
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p--------NGi~~s~dg~~ 147 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP--------NGIAFSPDGKT 147 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE--------EEEEEETTSSE
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc--------cceEECCcchh
Confidence 5532 2 22222233478988864322211112 568999999 66655432 2111 124433 34 6
Q ss_pred EEEEecCCCeEEEEeCCCCc--eEE---ccCCCccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEEeeecCCCCCC
Q 016421 290 LYAVEYLTNMVKKYDKLKNT--WDV---LGRLPVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVLNSWCPKSGVN 363 (390)
Q Consensus 290 l~v~gg~~~~v~~yd~~~~~--W~~---v~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~ 363 (390)
||+.....+.|++||+.... +.. +..++.... .--+++ --+|+||+..-..+ .|.+|+++-
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g----~pDG~~vD~~G~l~va~~~~~------~I~~~~p~G--- 214 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPG----YPDGLAVDSDGNLWVADWGGG------RIVVFDPDG--- 214 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC----EEEEEEEBTTS-EEEEEETTT------EEEEEETTS---
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCc----CCCcceEcCCCCEEEEEcCCC------EEEEECCCc---
Confidence 88888888899999986443 332 223332210 001232 34789999843221 589999985
Q ss_pred CCCCceEEecccCccCeEEeeeeee
Q 016421 364 NGTLDWKVLAEKQHVGVFVYNCAVL 388 (390)
Q Consensus 364 ~~~~~W~~~~~~p~~~~~~~~~~~~ 388 (390)
..-..+. +| ...+.+|+.-
T Consensus 215 ---~~~~~i~-~p--~~~~t~~~fg 233 (246)
T PF08450_consen 215 ---KLLREIE-LP--VPRPTNCAFG 233 (246)
T ss_dssp ---CEEEEEE--S--SSSEEEEEEE
T ss_pred ---cEEEEEc-CC--CCCEEEEEEE
Confidence 3444444 32 2255566653
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0083 Score=52.05 Aligned_cols=119 Identities=16% Similarity=0.200 Sum_probs=68.8
Q ss_pred EEEEEeccCCCCCccceEEEEECCCCc--------EE---EcCCCCCCCcCceEEEE--CC--EEEEEecccCCCccCce
Q 016421 188 IAIIAGGSDKNGHVLKSAELYDSTTGR--------WE---MLPSMHSPRRLCSGFFM--DG--KFYVIGGMSSPTVSLTC 252 (390)
Q Consensus 188 ~lyv~GG~~~~~~~~~~~~~yd~~t~~--------W~---~~~~~~~~r~~~~~~~~--~~--~iyv~GG~~~~~~~~~~ 252 (390)
.-++.||...+....+++++....+.. ++ .++++|.+|++|++-++ .| ...+|||++--....
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q-- 117 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQ-- 117 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccc--
Confidence 334558887776666777766554332 21 15789999999987654 33 467788875311111
Q ss_pred EEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEE--ccCCCccccCCCcceeEE
Q 016421 253 GEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDV--LGRLPVRADLSNGWGLAF 330 (390)
Q Consensus 253 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~--v~~~~~~~~~~~~~~~~~ 330 (390)
-.|+.|..+-+-++ ++|+++ ++-+..+. ++.+..+..+ +..
T Consensus 118 -----RTTenWNsVvDC~P-----------------~VfLiD----------leFGC~tah~lpEl~dG~SF-----Hvs 160 (337)
T PF03089_consen 118 -----RTTENWNSVVDCPP-----------------QVFLID----------LEFGCCTAHTLPELQDGQSF-----HVS 160 (337)
T ss_pred -----cchhhcceeccCCC-----------------eEEEEe----------ccccccccccchhhcCCeEE-----EEE
Confidence 13567876554333 445554 33333322 3444444432 445
Q ss_pred EEeCCEEEEEcCCCC
Q 016421 331 KACGNELLVVGGQRG 345 (390)
Q Consensus 331 ~~~~~~lyv~GG~~~ 345 (390)
.+-+|.+|++||..-
T Consensus 161 lar~D~VYilGGHsl 175 (337)
T PF03089_consen 161 LARNDCVYILGGHSL 175 (337)
T ss_pred EecCceEEEEccEEc
Confidence 577999999999653
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.16 Score=49.88 Aligned_cols=283 Identities=14% Similarity=0.149 Sum_probs=139.1
Q ss_pred CCCCCCCCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCchhhh--hhcCccc---cEEEEEeCC------Cee
Q 016421 41 GPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLR--KQLGIVE---HWVYLVCDP------RGW 109 (390)
Q Consensus 41 ~~~~~~~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~~~r--~~~~~~~---~~l~~~~~~------~~~ 109 (390)
......+..||.++...||..|+.+.+..++.||+.|+.++.+....... ....... .+-...... ...
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~ 181 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSF 181 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhh
Confidence 34566899999999999999999999999999999999998876654321 1111100 000000000 000
Q ss_pred EE-EecCCCceeeCCCCCCCcccCCCCeeEE--Ee-CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee
Q 016421 110 EA-FDPMKKKWMALPKIPCDECFNHADKESL--AV-GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL 185 (390)
Q Consensus 110 ~~-~d~~~~~W~~l~~~p~~~~~~~~~~~~~--~~-~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 185 (390)
+. .....+.|.............+....++ .. ++.++ . |. ..+.+.+||..+..-...+.--..-.-.+....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~-~-~s-~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~ 258 (537)
T KOG0274|consen 182 YRRRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLHDGFFK-S-GS-DDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFP 258 (537)
T ss_pred hhhhhhccccccccccccceeecccCcchhhhheeecCeEE-e-cC-CCceeEEeecccceEEEeeccCCCCCceeEEEe
Confidence 00 1111223433221111111111111111 11 22221 1 21 233456777766544332111111111122222
Q ss_pred -CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceE
Q 016421 186 -GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR 264 (390)
Q Consensus 186 -~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 264 (390)
++.+++.|-.+ .++.+.|..++....+-. .......+...+..+.++|. .-..|.++|..+..--
T Consensus 259 ~~~~~lvsgS~D------~t~rvWd~~sg~C~~~l~---gh~stv~~~~~~~~~~~sgs-----~D~tVkVW~v~n~~~l 324 (537)
T KOG0274|consen 259 SGGDKLVSGSTD------KTERVWDCSTGECTHSLQ---GHTSSVRCLTIDPFLLVSGS-----RDNTVKVWDVTNGACL 324 (537)
T ss_pred cCCCEEEEEecC------CcEEeEecCCCcEEEEec---CCCceEEEEEccCceEeecc-----CCceEEEEeccCcceE
Confidence 35555555433 346778888888776532 11111222233444444432 2345777888866554
Q ss_pred EccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCC-EEEEEcCC
Q 016421 265 KIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGN-ELLVVGGQ 343 (390)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~-~lyv~GG~ 343 (390)
.+-.-.. .....+.+++.+.+.|...+.|-+||+.+.+--. .+.. +.+. .....+++ ..++-|..
T Consensus 325 ~l~~~h~-------~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~--sl~g----H~~~-V~sl~~~~~~~~~Sgs~ 390 (537)
T KOG0274|consen 325 NLLRGHT-------GPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLK--SLSG----HTGR-VYSLIVDSENRLLSGSL 390 (537)
T ss_pred EEecccc-------ccEEEEEecCCEEEEEecCceEEEEEhhhceeee--eecC----Ccce-EEEEEecCcceEEeeee
Confidence 3322110 1123456677778888777899999998655333 2211 1111 22234566 55555554
Q ss_pred CCCCCCeEEEeeecCCC
Q 016421 344 RGPEGENVVLNSWCPKS 360 (390)
Q Consensus 344 ~~~~~~~~~i~~y~~~~ 360 (390)
+ ..|.+||+++
T Consensus 391 D------~~IkvWdl~~ 401 (537)
T KOG0274|consen 391 D------TTIKVWDLRT 401 (537)
T ss_pred c------cceEeecCCc
Confidence 4 2588899887
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.042 Score=49.05 Aligned_cols=163 Identities=14% Similarity=0.250 Sum_probs=88.7
Q ss_pred EEEEeccCCCCC-ccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCceEEEEeCCCCceEEc
Q 016421 189 AIIAGGSDKNGH-VLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKI 266 (390)
Q Consensus 189 lyv~GG~~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 266 (390)
|||-|-+...+. ....+-.||..+.+|.....--... -...... ++++|+.|.....+.....+..||.++.+|+.+
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~ 79 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSL 79 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeec
Confidence 345444443332 4677889999999999875431111 1122233 778888886554332356688899999999988
Q ss_pred cCCC-CCCCCcCCCCCEEEE---ECCEEEEEecC---CCeEEEEeCCCCceEEccC-CCccccCCCcceeEEEEe-----
Q 016421 267 EGMY-PNVNRAAQAPPLVAV---VDNQLYAVEYL---TNMVKKYDKLKNTWDVLGR-LPVRADLSNGWGLAFKAC----- 333 (390)
Q Consensus 267 ~~~~-~~~~~~~~~~~~~~~---~~g~l~v~gg~---~~~v~~yd~~~~~W~~v~~-~~~~~~~~~~~~~~~~~~----- 333 (390)
..-. .... .+ .....+ -...+++.|.. ...+..| +..+|+.+.. .-..... ..+..++.+
T Consensus 80 ~~~~s~~ip-gp--v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~~~~~~~t~--I~~l~~~~l~~~~~ 152 (281)
T PF12768_consen 80 GGGSSNSIP-GP--VTALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGSDILGSGTT--IRGLQVLPLNSSSH 152 (281)
T ss_pred CCcccccCC-Cc--EEEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccccccCCCCE--EEEEEEEecccccc
Confidence 7622 1000 01 011222 12357777642 3456677 4779999875 2111110 011223322
Q ss_pred -------CCEEEEEcCC-CCCCCCeEEEeeecCC
Q 016421 334 -------GNELLVVGGQ-RGPEGENVVLNSWCPK 359 (390)
Q Consensus 334 -------~~~lyv~GG~-~~~~~~~~~i~~y~~~ 359 (390)
++++.++-|. .-+.....+...||-.
T Consensus 153 ~~~~~~~~~~~Llv~G~l~~~~~G~~saalydG~ 186 (281)
T PF12768_consen 153 DNSSLFDSDQVLLVTGSLNLPDFGNASAALYDGT 186 (281)
T ss_pred ccccccCCCcEEEEEeeEecCCCCcEEEEEECCC
Confidence 4556666664 3344344456678774
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0012 Score=57.98 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=39.5
Q ss_pred CCCCCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCch
Q 016421 44 DSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLY 87 (390)
Q Consensus 44 ~~~~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~ 87 (390)
...|-+||||+++.|++.||.+.|.++..|||+|+++-++..++
T Consensus 95 gv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW 138 (419)
T KOG2120|consen 95 GVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW 138 (419)
T ss_pred CCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence 34588999999999999999999999999999999988876654
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.68 Score=45.29 Aligned_cols=259 Identities=16% Similarity=0.135 Sum_probs=129.0
Q ss_pred ccccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCcc-cCCCCeeEEEeC-CEEEEEcccccCCeEEEEECCCCc--Ee
Q 016421 95 IVEHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDEC-FNHADKESLAVG-SELLVFGRELFDFAIWKYSLVFRS--WM 168 (390)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~-~~~~~~~~~~~~-~~iy~~Gg~~~~~~~~~yd~~t~~--W~ 168 (390)
..+..+|+......++++|+.+. .|..-...+.... ...........+ +.||+... ...++.+|..|++ |+
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~---~g~v~AlD~~TG~~~W~ 135 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF---DGRLVALDAETGKQVWK 135 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC---CCeEEEEECCCCCEeee
Confidence 34677888766678899998855 4865332221000 000011122335 77776543 3578889998765 76
Q ss_pred ecCCCCCCC---cceeeeeeCCEEEEEeccCCCC---CccceEEEEECCCCc--EEEcCCCC----CCC-----------
Q 016421 169 KCEGMNHPR---CLFGSGSLGSIAIIAGGSDKNG---HVLKSAELYDSTTGR--WEMLPSMH----SPR----------- 225 (390)
Q Consensus 169 ~~~~~~~~r---~~~~~~~~~~~lyv~GG~~~~~---~~~~~~~~yd~~t~~--W~~~~~~~----~~r----------- 225 (390)
.-...+... ...+.++.++.+|+ |...... .....+..+|..|++ |+.-...+ .+.
T Consensus 136 ~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 136 FGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred ecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 543221101 11233445666664 4322110 123568999999885 87522111 110
Q ss_pred ---cCceEEE--ECCEEEEEecccC-----------CCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEEE--
Q 016421 226 ---RLCSGFF--MDGKFYVIGGMSS-----------PTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVAV-- 285 (390)
Q Consensus 226 ---~~~~~~~--~~~~iyv~GG~~~-----------~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~-- 285 (390)
...+.+. -++.||+-.+... .......++.+|..+.+ |+.-...+..........+.+..
T Consensus 215 g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~ 294 (488)
T cd00216 215 GGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK 294 (488)
T ss_pred CCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc
Confidence 0011222 2567777644321 11223579999998874 87432211110000111122221
Q ss_pred -ECCE---EEEEecCCCeEEEEeCCCCc--eEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCC-----------CCC
Q 016421 286 -VDNQ---LYAVEYLTNMVKKYDKLKNT--WDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRG-----------PEG 348 (390)
Q Consensus 286 -~~g~---l~v~gg~~~~v~~yd~~~~~--W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~-----------~~~ 348 (390)
.+|. +.+++...+.++.+|.++.+ |+.-.... .+....+.+|+-..... ...
T Consensus 295 ~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~-----------~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~ 363 (488)
T cd00216 295 PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ-----------PMAYDPGLVYLGAFHIPLGLPPQKKKRCKKP 363 (488)
T ss_pred ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc-----------ccccCCceEEEccccccccCcccccCCCCCC
Confidence 2332 45556667889999999985 87532100 01122366776432110 011
Q ss_pred CeEEEeeecCCCCCCCCCCceEEe
Q 016421 349 ENVVLNSWCPKSGVNNGTLDWKVL 372 (390)
Q Consensus 349 ~~~~i~~y~~~~~~~~~~~~W~~~ 372 (390)
....+.++|..+ ++..|+.-
T Consensus 364 ~~G~l~AlD~~t----G~~~W~~~ 383 (488)
T cd00216 364 GKGGLAALDPKT----GKVVWEKR 383 (488)
T ss_pred CceEEEEEeCCC----CcEeeEee
Confidence 233588899988 56779864
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.091 Score=46.00 Aligned_cols=105 Identities=24% Similarity=0.396 Sum_probs=73.0
Q ss_pred ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEE
Q 016421 233 MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDV 312 (390)
Q Consensus 233 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~ 312 (390)
.+|.+|.-.|.-+ .+.+..||+.+++-....+++.. -++=+++.++++||.+--..+...+||+++ .+.
T Consensus 54 ~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~~~-----~FgEGit~~~d~l~qLTWk~~~~f~yd~~t--l~~ 122 (264)
T PF05096_consen 54 DDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLPPR-----YFGEGITILGDKLYQLTWKEGTGFVYDPNT--LKK 122 (264)
T ss_dssp ETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-TTT-------EEEEEEETTEEEEEESSSSEEEEEETTT--TEE
T ss_pred CCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECCcc-----ccceeEEEECCEEEEEEecCCeEEEEcccc--ceE
Confidence 5789999877643 45688899999987766666663 233368999999999998888999999875 556
Q ss_pred ccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 313 LGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+...+-+. -|||.+ ..+..|++-.|.+ .++.+||++
T Consensus 123 ~~~~~y~~---EGWGLt--~dg~~Li~SDGS~-------~L~~~dP~~ 158 (264)
T PF05096_consen 123 IGTFPYPG---EGWGLT--SDGKRLIMSDGSS-------RLYFLDPET 158 (264)
T ss_dssp EEEEE-SS---S--EEE--ECSSCEEEE-SSS-------EEEEE-TTT
T ss_pred EEEEecCC---cceEEE--cCCCEEEEECCcc-------ceEEECCcc
Confidence 66554432 267754 6778899888855 577888865
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.59 Score=40.97 Aligned_cols=76 Identities=17% Similarity=0.255 Sum_probs=55.4
Q ss_pred cCCCCCCCcceeeeee----CCEEEEEeccCCC--C-----------CccceEEEEECCCCcEEE--cCCCCCCCcCceE
Q 016421 170 CEGMNHPRCLFGSGSL----GSIAIIAGGSDKN--G-----------HVLKSAELYDSTTGRWEM--LPSMHSPRRLCSG 230 (390)
Q Consensus 170 ~~~~~~~r~~~~~~~~----~~~lyv~GG~~~~--~-----------~~~~~~~~yd~~t~~W~~--~~~~~~~r~~~~~ 230 (390)
+...|.+|++|.+.++ +.-.++|||..-- + ...-.|+..|++-+.++. ++.+......|.+
T Consensus 81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvs 160 (337)
T PF03089_consen 81 VGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVS 160 (337)
T ss_pred cCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEE
Confidence 4578999999988766 2356777886311 1 023458888998887754 5667777777888
Q ss_pred EEECCEEEEEecccC
Q 016421 231 FFMDGKFYVIGGMSS 245 (390)
Q Consensus 231 ~~~~~~iyv~GG~~~ 245 (390)
.+-++.+|++||+.-
T Consensus 161 lar~D~VYilGGHsl 175 (337)
T PF03089_consen 161 LARNDCVYILGGHSL 175 (337)
T ss_pred EecCceEEEEccEEc
Confidence 888999999999864
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.63 Score=40.74 Aligned_cols=187 Identities=11% Similarity=0.081 Sum_probs=102.2
Q ss_pred CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceee-ee
Q 016421 106 PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGS-GS 184 (390)
Q Consensus 106 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~-~~ 184 (390)
.+.+..+|+++..-++.+ +|...........++--.+.++..|.... -=+.||.++.-+..+.+ ......++ +.
T Consensus 123 ~~aI~R~dpkt~evt~f~-lp~~~a~~nlet~vfD~~G~lWFt~q~G~---yGrLdPa~~~i~vfpaP-qG~gpyGi~at 197 (353)
T COG4257 123 GLAIGRLDPKTLEVTRFP-LPLEHADANLETAVFDPWGNLWFTGQIGA---YGRLDPARNVISVFPAP-QGGGPYGICAT 197 (353)
T ss_pred cceeEEecCcccceEEee-cccccCCCcccceeeCCCccEEEeecccc---ceecCcccCceeeeccC-CCCCCcceEEC
Confidence 347778888766555443 33322211111223333466666653211 12567877766554443 22222333 34
Q ss_pred eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCC-CcCceEE--EECCEEEEEecccCCCccCceEEEEeCCCC
Q 016421 185 LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSP-RRLCSGF--FMDGKFYVIGGMSSPTVSLTCGEEFDLETR 261 (390)
Q Consensus 185 ~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-r~~~~~~--~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 261 (390)
-++.+|+..-. -+-+-..|+.+..=+.++. |.+ ......+ --.|++.+. + -....+++|||++.
T Consensus 198 pdGsvwyasla------gnaiaridp~~~~aev~p~-P~~~~~gsRriwsdpig~~wit---t---wg~g~l~rfdPs~~ 264 (353)
T COG4257 198 PDGSVWYASLA------GNAIARIDPFAGHAEVVPQ-PNALKAGSRRIWSDPIGRAWIT---T---WGTGSLHRFDPSVT 264 (353)
T ss_pred CCCcEEEEecc------ccceEEcccccCCcceecC-CCcccccccccccCccCcEEEe---c---cCCceeeEeCcccc
Confidence 47888887321 2346667887775444432 322 1111111 234566665 1 12345788999999
Q ss_pred ceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEcc
Q 016421 262 KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 262 ~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~ 314 (390)
+|.+-+- |... .+....-+--.|++++-.-..+.+.+||+++.+.+.+.
T Consensus 265 sW~eypL-Pgs~---arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 265 SWIEYPL-PGSK---ARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred cceeeeC-CCCC---CCcceeeeccCCcEEeeccccCceeecCcccceEEEec
Confidence 9987542 2211 12222334456788887777889999999999988864
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.46 Score=41.69 Aligned_cols=193 Identities=14% Similarity=0.082 Sum_probs=102.6
Q ss_pred ccEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE-eCCEEEEEcccccCCeEEEEECCCCcEeecCCCC
Q 016421 97 EHWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA-VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN 174 (390)
Q Consensus 97 ~~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~-~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~ 174 (390)
+..||... ....++.+|+.+..-..+. .+.+. ...+. .++.+|+... ....++|+.+++++.+...+
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~~~------G~~~~~~~g~l~v~~~----~~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVID-LPGPN------GMAFDRPDGRLYVADS----GGIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEE-SSSEE------EEEEECTTSEEEEEET----TCEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEe-cCCCc------eEEEEccCCEEEEEEc----CceEEEecCCCcEEEEeecc
Confidence 34455553 4677889999887654322 22211 11222 3677777653 34566799999987775542
Q ss_pred C---CCcce--eeeeeCCEEEEEeccCCCCCcc--ceEEEEECCCCcEEEcC-CCCCCCcCceEEEE-CC-EEEEEeccc
Q 016421 175 H---PRCLF--GSGSLGSIAIIAGGSDKNGHVL--KSAELYDSTTGRWEMLP-SMHSPRRLCSGFFM-DG-KFYVIGGMS 244 (390)
Q Consensus 175 ~---~r~~~--~~~~~~~~lyv~GG~~~~~~~~--~~~~~yd~~t~~W~~~~-~~~~~r~~~~~~~~-~~-~iyv~GG~~ 244 (390)
. +.... .++.-++.+|+---........ ..++++++. ++.+.+. .+..+ .+.+.. ++ .+|+.-.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ds-- 153 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYVADS-- 153 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEEEET--
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheeeccc--
Confidence 1 22222 3333467888864322111112 568999998 6655442 22222 223332 44 5777522
Q ss_pred CCCccCceEEEEeCCCCc--eEE---ccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEcc
Q 016421 245 SPTVSLTCGEEFDLETRK--WRK---IEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 245 ~~~~~~~~v~~yd~~~~~--W~~---~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~ 314 (390)
....+++||+.... +.. +..++.... ..-.+++ .+|.||+..-..+.|.+||++...-..+.
T Consensus 154 ----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g----~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 154 ----FNGRIWRFDLDADGGELSNRRVFIDFPGGPG----YPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp ----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSC----EEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE
T ss_pred ----ccceeEEEeccccccceeeeeeEEEcCCCCc----CCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEc
Confidence 24568888886433 432 222222110 0112333 46899998777789999999966555554
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.13 Score=40.16 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=54.7
Q ss_pred EEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCC------CeEEEE-
Q 016421 231 FFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT------NMVKKY- 303 (390)
Q Consensus 231 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~------~~v~~y- 303 (390)
+.+||-+|.+.... ......+.+||..+++|+.+..+... ........++.++|+|.++.... -++|+.
T Consensus 2 icinGvly~~a~~~--~~~~~~IvsFDv~~E~f~~i~~P~~~--~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLe 77 (129)
T PF08268_consen 2 ICINGVLYWLAWSE--DSDNNVIVSFDVRSEKFRFIKLPEDP--YSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLE 77 (129)
T ss_pred EEECcEEEeEEEEC--CCCCcEEEEEEcCCceEEEEEeeeee--ccccCccEEEEeCCeEEEEEecCCCCcceEEEEEee
Confidence 56899999987662 22356789999999999987653111 11234457889999999986421 245555
Q ss_pred eCCCCceEEcc
Q 016421 304 DKLKNTWDVLG 314 (390)
Q Consensus 304 d~~~~~W~~v~ 314 (390)
|.+..+|.+..
T Consensus 78 D~~k~~Wsk~~ 88 (129)
T PF08268_consen 78 DYEKQEWSKKH 88 (129)
T ss_pred ccccceEEEEE
Confidence 56678999864
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=1.4 Score=42.53 Aligned_cols=147 Identities=11% Similarity=-0.018 Sum_probs=80.8
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 233 (390)
...++++|..+++-+.+...+..........-+..|++....++ ..+++++|..+++.+.+..-...- ......-
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~~~-~~p~wSp 315 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRAID-TEPSWHP 315 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCCCc-cceEECC
Confidence 35789999988877666554322222222222445655543322 357899999999888775422111 1111223
Q ss_pred CC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECC-EEEEEec--CCCeEEEEeCCCCc
Q 016421 234 DG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDN-QLYAVEY--LTNMVKKYDKLKNT 309 (390)
Q Consensus 234 ~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g-~l~v~gg--~~~~v~~yd~~~~~ 309 (390)
+| .|++.....+ ...++.+|+.++++..+..... .. ..+ ...-+| .|++.+. ....++.+|+.+++
T Consensus 316 DG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~-~~----~~~-~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 316 DGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGE-QN----LGG-SITPDGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCC-CC----cCe-eECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence 45 4554432221 2468899999999887742111 00 111 223344 4544432 23478889999988
Q ss_pred eEEccC
Q 016421 310 WDVLGR 315 (390)
Q Consensus 310 W~~v~~ 315 (390)
...+..
T Consensus 386 ~~~lt~ 391 (448)
T PRK04792 386 MQVLTS 391 (448)
T ss_pred eEEccC
Confidence 877653
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.2 Score=43.92 Aligned_cols=159 Identities=14% Similarity=0.032 Sum_probs=95.8
Q ss_pred eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 141 VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 141 ~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
.++.+|.--|....+.+..+|+.|++-....++|..-..=+++.++++||.+== .....++||+.+ .+.+..
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW------k~~~~f~yd~~t--l~~~~~ 125 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW------KEGTGFVYDPNT--LKKIGT 125 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES------SSSEEEEEETTT--TEEEEE
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe------cCCeEEEEcccc--ceEEEE
Confidence 467888887777677899999999987766677766666699999999999832 245689999875 445544
Q ss_pred CCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcC-CCCCEEEEECCEEEEEecCCCe
Q 016421 221 MHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAA-QAPPLVAVVDNQLYAVEYLTNM 299 (390)
Q Consensus 221 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~g~l~v~gg~~~~ 299 (390)
.+.+..+-+.+.-+..+++--| .+.++..||.+-+=.. .+.......+ ..---+-.++|.||.==-..+.
T Consensus 126 ~~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~~~~--~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~ 196 (264)
T PF05096_consen 126 FPYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFKEVR--TIQVTDNGRPVSNLNELEYINGKIYANVWQTDR 196 (264)
T ss_dssp EE-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-SEEE--EEE-EETTEE---EEEEEEETTEEEEEETTSSE
T ss_pred EecCCcceEEEcCCCEEEEECC-------ccceEEECCcccceEE--EEEEEECCEECCCcEeEEEEcCEEEEEeCCCCe
Confidence 4555556666655556666533 4567788988643221 1111000000 0011244567777766556789
Q ss_pred EEEEeCCCCc---eEEccCC
Q 016421 300 VKKYDKLKNT---WDVLGRL 316 (390)
Q Consensus 300 v~~yd~~~~~---W~~v~~~ 316 (390)
|.+-||++++ |-.+..+
T Consensus 197 I~~Idp~tG~V~~~iDls~L 216 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGL 216 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHH
T ss_pred EEEEeCCCCeEEEEEEhhHh
Confidence 9999999986 5554443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.14 Score=45.72 Aligned_cols=110 Identities=16% Similarity=0.174 Sum_probs=67.2
Q ss_pred cCCeEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC-----CCCCc
Q 016421 153 FDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM-----HSPRR 226 (390)
Q Consensus 153 ~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-----~~~r~ 226 (390)
.+..+-.||+.+.+|..+..-... .-..+... +++||+.|-...++.....+..||..+.+|..++.. |.+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 356788999999999887553111 11123333 788888886654432466789999999999887652 33321
Q ss_pred CceEEEEC-CEEEEEecccCCCccCceEEEEeCCCCceEEccC
Q 016421 227 LCSGFFMD-GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEG 268 (390)
Q Consensus 227 ~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 268 (390)
.......+ ..+++.|.... ....+..|| ..+|+.+..
T Consensus 93 a~~~~~~d~~~~~~aG~~~~---g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSAN---GSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEeceecC---CCceEEEEc--CCceEeccc
Confidence 11111123 36777665422 234566674 557998866
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.28 Score=45.60 Aligned_cols=147 Identities=12% Similarity=0.036 Sum_probs=80.8
Q ss_pred EeCCE-EEEEcccccCCeEEEEECCCCcEeecCCCCC--CCcc-eeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcE
Q 016421 140 AVGSE-LLVFGRELFDFAIWKYSLVFRSWMKCEGMNH--PRCL-FGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRW 215 (390)
Q Consensus 140 ~~~~~-iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~--~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (390)
..++. ..+++|. ..-++.||..+.+-..+.++-. .+.. .--+..++.++++-|..+ .+......|+.|
T Consensus 266 ~p~G~~~i~~s~r--rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~el 337 (514)
T KOG2055|consen 266 APNGHSVIFTSGR--RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKEL 337 (514)
T ss_pred cCCCceEEEeccc--ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhh
Confidence 33444 5555552 3467899999998888766421 1111 122334555666666543 367777888888
Q ss_pred EEcCCCCCCCcCceEEEECC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCE-EEEECCEEEEE
Q 016421 216 EMLPSMHSPRRLCSGFFMDG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPL-VAVVDNQLYAV 293 (390)
Q Consensus 216 ~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~g~l~v~ 293 (390)
..--.++........ .-++ .|++.||.. .|+++|+..+.-.. ......+ -++.. +...++.++..
T Consensus 338 i~s~KieG~v~~~~f-sSdsk~l~~~~~~G-------eV~v~nl~~~~~~~--rf~D~G~---v~gts~~~S~ng~ylA~ 404 (514)
T KOG2055|consen 338 ITSFKIEGVVSDFTF-SSDSKELLASGGTG-------EVYVWNLRQNSCLH--RFVDDGS---VHGTSLCISLNGSYLAT 404 (514)
T ss_pred hheeeeccEEeeEEE-ecCCcEEEEEcCCc-------eEEEEecCCcceEE--EEeecCc---cceeeeeecCCCceEEe
Confidence 543233322222211 2344 566666542 58899998874221 1111111 11112 23467888888
Q ss_pred ecCCCeEEEEeCCC
Q 016421 294 EYLTNMVKKYDKLK 307 (390)
Q Consensus 294 gg~~~~v~~yd~~~ 307 (390)
|...+-|-+||.++
T Consensus 405 GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 405 GSDSGIVNIYDGNS 418 (514)
T ss_pred ccCcceEEEeccch
Confidence 87788888998654
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=2 Score=41.17 Aligned_cols=193 Identities=11% Similarity=-0.034 Sum_probs=97.6
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCC
Q 016421 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH 222 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 222 (390)
+.|+...-......++++|..+++-+.+...+..........-+.+|++.....+ ..+++++|..++..+.+..-+
T Consensus 211 ~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~ 286 (430)
T PRK00178 211 KRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHP 286 (430)
T ss_pred CEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCC
Confidence 3444333222335789999998887776544321111111112345554432222 257899999999988765422
Q ss_pred CCCcCceEEEECC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEEC-CEEEEEec--CCC
Q 016421 223 SPRRLCSGFFMDG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVD-NQLYAVEY--LTN 298 (390)
Q Consensus 223 ~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-g~l~v~gg--~~~ 298 (390)
..-... ...-+| +|++.....+ ...++.+|+.++++.++..... .... ....-+ +.|++... ...
T Consensus 287 ~~~~~~-~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~~-----~~~~-~~~Spdg~~i~~~~~~~~~~ 355 (430)
T PRK00178 287 AIDTEP-FWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVGN-----YNAR-PRLSADGKTLVMVHRQDGNF 355 (430)
T ss_pred CCcCCe-EECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCCC-----Cccc-eEECCCCCEEEEEEccCCce
Confidence 111111 112244 5655532221 2468889999988877643211 0011 122223 44544432 224
Q ss_pred eEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 299 MVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 299 ~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.++.+|..+++.+.+....... .. ...-+|+.+++....+. ...++..+.+.
T Consensus 356 ~l~~~dl~tg~~~~lt~~~~~~------~p-~~spdg~~i~~~~~~~g---~~~l~~~~~~g 407 (430)
T PRK00178 356 HVAAQDLQRGSVRILTDTSLDE------SP-SVAPNGTMLIYATRQQG---RGVLMLVSING 407 (430)
T ss_pred EEEEEECCCCCEEEccCCCCCC------Cc-eECCCCCEEEEEEecCC---ceEEEEEECCC
Confidence 6899999999888776432111 11 12335555555443221 12466666644
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=95.60 E-value=2.5 Score=41.36 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=64.4
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCc--EeecCCCCCCC-----cceeeeeeC-CEEEEEeccCCCCCccceEEEEEC
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHPR-----CLFGSGSLG-SIAIIAGGSDKNGHVLKSAELYDS 210 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~r-----~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~yd~ 210 (390)
+..++.+|+.... ..++.+|..+++ |+.-...+... .....+..+ ++||+... ...+..+|.
T Consensus 58 vv~~g~vy~~~~~---g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~v~AlD~ 127 (488)
T cd00216 58 LVVDGDMYFTTSH---SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGRLVALDA 127 (488)
T ss_pred EEECCEEEEeCCC---CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCeEEEEEC
Confidence 5668888886542 578889988764 86533222001 111233445 78887432 245889999
Q ss_pred CCCc--EEEcCCCCC-CC--cCceEEEECCEEEEEecccCCC---ccCceEEEEeCCCCc--eEE
Q 016421 211 TTGR--WEMLPSMHS-PR--RLCSGFFMDGKFYVIGGMSSPT---VSLTCGEEFDLETRK--WRK 265 (390)
Q Consensus 211 ~t~~--W~~~~~~~~-~r--~~~~~~~~~~~iyv~GG~~~~~---~~~~~v~~yd~~~~~--W~~ 265 (390)
.|++ |+.-..... .. ...+.++.++.+|+ |...... .....++.+|..|.+ |+.
T Consensus 128 ~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 128 ETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred CCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEe
Confidence 9885 876432221 10 12233456777665 3221110 123568899998764 864
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.6 Score=37.89 Aligned_cols=200 Identities=15% Similarity=0.146 Sum_probs=89.8
Q ss_pred eEEEeCCEEEEEcc--cccCC---eEEEEE---CCCCcEee--cCCCCC-------CCcceeeeeeCCEEEEEeccCCCC
Q 016421 137 ESLAVGSELLVFGR--ELFDF---AIWKYS---LVFRSWMK--CEGMNH-------PRCLFGSGSLGSIAIIAGGSDKNG 199 (390)
Q Consensus 137 ~~~~~~~~iy~~Gg--~~~~~---~~~~yd---~~t~~W~~--~~~~~~-------~r~~~~~~~~~~~lyv~GG~~~~~ 199 (390)
+.-.+++++|..=- ....+ ..+.|+ ...+.|+. ++..+. .-..|+.+.+++.-|.+|-.+++.
T Consensus 79 SMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~ 158 (367)
T PF12217_consen 79 SMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDV 158 (367)
T ss_dssp -EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SS
T ss_pred eeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCC
Confidence 44567888886532 11221 234454 34667854 344443 234467778888888888666554
Q ss_pred CccceEE-EEECCCCcE--------EEcCCCCCCCc--CceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccC
Q 016421 200 HVLKSAE-LYDSTTGRW--------EMLPSMHSPRR--LCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEG 268 (390)
Q Consensus 200 ~~~~~~~-~yd~~t~~W--------~~~~~~~~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 268 (390)
. ..++- .|-+ +.| +.++.- ..+. .+..-.++|++|+..-...+...-+.+.+-+.....|..+..
T Consensus 159 s-PRe~G~~yfs--~~~~sp~~~vrr~i~se-y~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf 234 (367)
T PF12217_consen 159 S-PRELGFLYFS--DAFASPGVFVRRIIPSE-YERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF 234 (367)
T ss_dssp S-S-EEEEEEET--TTTT-TT--EEEE--GG-G-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-
T ss_pred C-cceeeEEEec--ccccCCcceeeeechhh-hccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc
Confidence 3 23332 3322 222 222221 1111 122335799999997544444445667777888889998754
Q ss_pred CCCCCCCcCCCCCEEEEECCEEEEEec-------------------CCCeEE------EEeCCCCceEEccC-CCccccC
Q 016421 269 MYPNVNRAAQAPPLVAVVDNQLYAVEY-------------------LTNMVK------KYDKLKNTWDVLGR-LPVRADL 322 (390)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~g~l~v~gg-------------------~~~~v~------~yd~~~~~W~~v~~-~~~~~~~ 322 (390)
... . .......+.+++.||++|. +....+ -|.++.-+|..|.+ .-.+...
T Consensus 235 p~n-v---HhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~iv 310 (367)
T PF12217_consen 235 PNN-V---HHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIV 310 (367)
T ss_dssp TT-------SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS
T ss_pred ccc-c---cccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccc
Confidence 322 1 1233446789999999973 011111 13556667877753 2222222
Q ss_pred CCcceeEEE-EeCCEE-EEEcCCC
Q 016421 323 SNGWGLAFK-ACGNEL-LVVGGQR 344 (390)
Q Consensus 323 ~~~~~~~~~-~~~~~l-yv~GG~~ 344 (390)
.+..|.+.+ +-+|.| |+|||.+
T Consensus 311 NSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 311 NSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp ---SEEEEEEEETTEEEEEEEEB-
T ss_pred cccccceeEEEECCEEEEEecCcc
Confidence 334454444 447766 6778755
|
This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=3.1 Score=40.05 Aligned_cols=146 Identities=8% Similarity=-0.104 Sum_probs=77.8
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 233 (390)
...++++|+.+++.+.+...+..........-+.+|++....++ ..+++++|..++.-+.+..-+..-. .....-
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~~~~~~-~~~~sp 299 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDSPAIDT-SPSYSP 299 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCCCCccC-ceeEcC
Confidence 46899999999888777654432222222222345554433222 3568999999988777654332111 111223
Q ss_pred CCE-EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECC-EEEEEec--CCCeEEEEeCCCCc
Q 016421 234 DGK-FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDN-QLYAVEY--LTNMVKKYDKLKNT 309 (390)
Q Consensus 234 ~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g-~l~v~gg--~~~~v~~yd~~~~~ 309 (390)
+|+ |++.....+ ...++.+|..+...+.+...... .......-+| .|++... ....++.+|+.++.
T Consensus 300 DG~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~~~~~------~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 300 DGSQIVFESDRSG----SPQLYVMNADGSNPRRISFGGGR------YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred CCCEEEEEECCCC----CCeEEEEECCCCCeEEeecCCCc------ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 454 444332211 24688899888777766532110 1111222344 4444432 22478889987776
Q ss_pred eEEcc
Q 016421 310 WDVLG 314 (390)
Q Consensus 310 W~~v~ 314 (390)
...+.
T Consensus 370 ~~~lt 374 (435)
T PRK05137 370 ERILT 374 (435)
T ss_pred eEecc
Confidence 66554
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.59 Score=43.57 Aligned_cols=160 Identities=15% Similarity=0.131 Sum_probs=93.2
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEE--EECCE-EEEEecccCCCccCceEEEEeCCCCc
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGF--FMDGK-FYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~--~~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
.-.+.+.+|.++. -.++..|-++|. .+.++...+.....+ .-+|. ..+++|+ ..-++.||+.+.+
T Consensus 224 ~~plllvaG~d~~----lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r------rky~ysyDle~ak 291 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT----LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR------RKYLYSYDLETAK 291 (514)
T ss_pred CCceEEEecCCCc----EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc------ceEEEEeeccccc
Confidence 3467777887653 346666666665 444444433322222 22555 6666664 3457889999999
Q ss_pred eEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcC
Q 016421 263 WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGG 342 (390)
Q Consensus 263 W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG 342 (390)
-+++.++.......- .-.-+..++.++++-|..+.|......|++|..--.++.... +......+.+|+++||
T Consensus 292 ~~k~~~~~g~e~~~~--e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~-----~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSM--ERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS-----DFTFSSDSKELLASGG 364 (514)
T ss_pred cccccCCCCcccchh--heeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe-----eEEEecCCcEEEEEcC
Confidence 988876654221111 112345666777777888889888888888854222222211 1233334556788877
Q ss_pred CCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016421 343 QRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 343 ~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
.. +|++||..++ -+..+|..-+
T Consensus 365 ~G-------eV~v~nl~~~--~~~~rf~D~G 386 (514)
T KOG2055|consen 365 TG-------EVYVWNLRQN--SCLHRFVDDG 386 (514)
T ss_pred Cc-------eEEEEecCCc--ceEEEEeecC
Confidence 54 6999999873 3334465443
|
|
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.012 Score=51.92 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=38.6
Q ss_pred CCCCChHHHHHHHhhhccc-----cchhhhHhhcHHHHHHhhcCCchhh
Q 016421 46 LLPGLVDDVALNCLAFACT-----SDYASLLFINKRFHKLIKSGYLYGL 89 (390)
Q Consensus 46 ~~~~LP~dl~~~iL~rlp~-----~~l~~~~~V~k~w~~l~~s~~~~~~ 89 (390)
.+.-||||++.+||.++=. .+|.++.+|||.|.-...+|++++.
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 3567999999999998654 7999999999999999999998764
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=3.2 Score=39.89 Aligned_cols=182 Identities=12% Similarity=0.003 Sum_probs=93.0
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 233 (390)
...++++|..+++-..+...+..........-+.+|++....++ ..+++++|+.++.-+.+..-...... ....-
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~~~~~~-~~~sp 301 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHFGIDTE-PTWAP 301 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCCCCccc-eEECC
Confidence 35789999988877766554332211111122445655433222 25799999999887766432211111 11223
Q ss_pred CCE-EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECC-EEEEEecC--CCeEEEEeCCCCc
Q 016421 234 DGK-FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDN-QLYAVEYL--TNMVKKYDKLKNT 309 (390)
Q Consensus 234 ~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g-~l~v~gg~--~~~v~~yd~~~~~ 309 (390)
+|+ |++.....+ ...++.+|..+++...+..... .... ....-+| .|++.... ...++.||..+++
T Consensus 302 DG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g~-----~~~~-~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 302 DGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQGN-----YNAR-ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCeEEeecCCC-----CccC-EEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 554 444432221 2468889998888877642211 0011 1222344 45554332 2368999999988
Q ss_pred eEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 310 WDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 310 W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
...+..-.... .... .-+|+.+++....+ ....++.++.+.
T Consensus 372 ~~~Lt~~~~~~------~p~~-spdG~~i~~~s~~~---g~~~L~~~~~~g 412 (433)
T PRK04922 372 VRTLTPGSLDE------SPSF-APNGSMVLYATREG---GRGVLAAVSTDG 412 (433)
T ss_pred eEECCCCCCCC------CceE-CCCCCEEEEEEecC---CceEEEEEECCC
Confidence 88765432111 1222 33555444443321 123577777754
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=95.14 E-value=2.8 Score=38.98 Aligned_cols=224 Identities=13% Similarity=0.048 Sum_probs=108.6
Q ss_pred EEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccc-cCCeEEEE--ECCCCcEeecCCCCCCCcceeeee
Q 016421 110 EAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGREL-FDFAIWKY--SLVFRSWMKCEGMNHPRCLFGSGS 184 (390)
Q Consensus 110 ~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~-~~~~~~~y--d~~t~~W~~~~~~~~~r~~~~~~~ 184 (390)
+.||..+.++..+.......... .+.. .++.||+..... ....+..| +..+++.+.+...+......+...
T Consensus 18 ~~~d~~~g~l~~~~~~~~~~~Ps----~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~ 93 (345)
T PF10282_consen 18 FRFDEETGTLTLVQTVAEGENPS----WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIA 93 (345)
T ss_dssp EEEETTTTEEEEEEEEEESSSEC----CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEE
T ss_pred EEEcCCCCCceEeeeecCCCCCc----eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEE
Confidence 46777888887655322111110 0122 357788876543 34455555 555467766655442222222233
Q ss_pred e---CCEEEEEeccCCCCCccceEEEEECCCC-cEEEc---------CCCC---CCCcCceEEEE-C-CEEEEEecccCC
Q 016421 185 L---GSIAIIAGGSDKNGHVLKSAELYDSTTG-RWEML---------PSMH---SPRRLCSGFFM-D-GKFYVIGGMSSP 246 (390)
Q Consensus 185 ~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~---------~~~~---~~r~~~~~~~~-~-~~iyv~GG~~~~ 246 (390)
+ +..+|+.--. ...+.+|+...+ .-... .+-+ ..-..|.+... + ..+|+.- .
T Consensus 94 ~~~~g~~l~vany~------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d-l--- 163 (345)
T PF10282_consen 94 VDPDGRFLYVANYG------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD-L--- 163 (345)
T ss_dssp ECTTSSEEEEEETT------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE-T---
T ss_pred EecCCCEEEEEEcc------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe-c---
Confidence 3 4566665321 234677777653 22211 1111 11223444444 3 3566652 1
Q ss_pred CccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCC--CCceEEcc---CCC
Q 016421 247 TVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKL--KNTWDVLG---RLP 317 (390)
Q Consensus 247 ~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~--~~~W~~v~---~~~ 317 (390)
....|..|+...+. .........+...++| .++.. +..+|++....+.|.+|+.. +..++.+. .+|
T Consensus 164 --G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR---h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 164 --GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR---HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp --TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE---EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred --CCCEEEEEEEeCCCceEEEeeccccccCCCCc---EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence 24567777776655 6553332222111122 24443 34799999888888888766 66666654 343
Q ss_pred ccccCCCcceeEEEEe--CCEEEEEcCCCCCCCCeEEEeeecCC
Q 016421 318 VRADLSNGWGLAFKAC--GNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 318 ~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
....... ....+... +..||+..... ..|.+|+.+
T Consensus 239 ~~~~~~~-~~~~i~ispdg~~lyvsnr~~------~sI~vf~~d 275 (345)
T PF10282_consen 239 EGFTGEN-APAEIAISPDGRFLYVSNRGS------NSISVFDLD 275 (345)
T ss_dssp TTSCSSS-SEEEEEE-TTSSEEEEEECTT------TEEEEEEEC
T ss_pred ccccccC-CceeEEEecCCCEEEEEeccC------CEEEEEEEe
Confidence 3222111 22333333 55788876432 246667663
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.05 E-value=4 Score=40.36 Aligned_cols=115 Identities=14% Similarity=0.112 Sum_probs=66.6
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCc--EeecCCCCCCC--------cceeeeeeCCEEEEEeccCCCCCccceEEEE
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHPR--------CLFGSGSLGSIAIIAGGSDKNGHVLKSAELY 208 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~r--------~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~y 208 (390)
+..++.||+... ...++.+|..|++ |+.-...+... ...+.+..+++||+... ...+..+
T Consensus 66 vv~~g~vyv~s~---~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~AL 135 (527)
T TIGR03075 66 LVVDGVMYVTTS---YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLVAL 135 (527)
T ss_pred EEECCEEEEECC---CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEEEE
Confidence 456888888654 2368888988764 76543322111 11234556788887421 2358999
Q ss_pred ECCCCc--EEEcC-CCCCC-CcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc--eE
Q 016421 209 DSTTGR--WEMLP-SMHSP-RRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WR 264 (390)
Q Consensus 209 d~~t~~--W~~~~-~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~ 264 (390)
|..|++ |+.-. +.... ....+-++.+++||+-...... .....+..||..|++ |+
T Consensus 136 Da~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~-~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 136 DAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEF-GVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred ECCCCCEEeecccccccccccccCCcEEECCEEEEeeccccc-CCCcEEEEEECCCCceeEe
Confidence 999886 86532 22111 1122345678888775322111 124568889998875 76
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.87 Score=37.23 Aligned_cols=83 Identities=16% Similarity=0.075 Sum_probs=48.7
Q ss_pred EEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEE-EEECCEEEEEec--CC--CeEEEEe-
Q 016421 231 FFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLV-AVVDNQLYAVEY--LT--NMVKKYD- 304 (390)
Q Consensus 231 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~g~l~v~gg--~~--~~v~~yd- 304 (390)
+.++|.+|+++....... ...+..||+.++++.+..++|..... ......+ ++.+++|.++-. .. -.||+-+
T Consensus 2 V~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~~lP~~~~~-~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~ 79 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSLPLPFCNDD-DDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKK 79 (164)
T ss_pred EEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEECCCCccCc-cCCEEEEEEecCCEEEEEEeccCCccEEEEEEee
Confidence 678999999987654321 22688999999999443344442220 1112223 334778888842 22 3455443
Q ss_pred --CCCCceEEccC
Q 016421 305 --KLKNTWDVLGR 315 (390)
Q Consensus 305 --~~~~~W~~v~~ 315 (390)
....+|+++-.
T Consensus 80 ~~~~~~SWtK~~~ 92 (164)
T PF07734_consen 80 YGYGKESWTKLFT 92 (164)
T ss_pred eccCcceEEEEEE
Confidence 23678999643
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=94.99 E-value=3.4 Score=39.31 Aligned_cols=146 Identities=12% Similarity=-0.075 Sum_probs=78.3
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEEC
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMD 234 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 234 (390)
..++++|..+++...+..............-+..+++.....+ ...++.+|..++..+.+.......... ...-+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~d 288 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSPD 288 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCCCCCE-EECCC
Confidence 4788899988876655443322222111112345655543222 246899999988877765432211111 11224
Q ss_pred C-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC---CCeEEEEeCCCCce
Q 016421 235 G-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL---TNMVKKYDKLKNTW 310 (390)
Q Consensus 235 ~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~---~~~v~~yd~~~~~W 310 (390)
| +|++.....+ ...++.+|..+..+..+...... .......-+|+.+++... ...++.+|..++.+
T Consensus 289 g~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~~~------~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 289 GKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRGGY------NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred CCEEEEEECCCC----CceEEEEECCCCCEEEeecCCCC------ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 5 4554433221 23688899998888766532210 011123345555555432 24789999998777
Q ss_pred EEccC
Q 016421 311 DVLGR 315 (390)
Q Consensus 311 ~~v~~ 315 (390)
..+..
T Consensus 359 ~~l~~ 363 (417)
T TIGR02800 359 RVLTD 363 (417)
T ss_pred EEccC
Confidence 76653
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.99 Score=41.12 Aligned_cols=224 Identities=15% Similarity=0.138 Sum_probs=95.9
Q ss_pred eeEEEecCCCce--e-eCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCC-------C-C
Q 016421 108 GWEAFDPMKKKW--M-ALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN-------H-P 176 (390)
Q Consensus 108 ~~~~~d~~~~~W--~-~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~-------~-~ 176 (390)
-+..||+.+-+- + .+|+-|.......-....+..+++...+--..+...+-+-|...++--..-+.| . +
T Consensus 68 vv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~ 147 (342)
T PF06433_consen 68 VVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGN 147 (342)
T ss_dssp EEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEET
T ss_pred EEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCC
Confidence 356789887643 2 334322211111112233444554444434455677888888887763321111 1 1
Q ss_pred CcceeeeeeCCEEEEE-eccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEE
Q 016421 177 RCLFGSGSLGSIAIIA-GGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEE 255 (390)
Q Consensus 177 r~~~~~~~~~~~lyv~-GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 255 (390)
+. |.+..-+|.+..+ -+..+.. ......+|++..+-.-.-+.........--+.++|+||-+-=.... ......
T Consensus 148 ~~-F~~lC~DGsl~~v~Ld~~Gk~-~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~---~~~~~~ 222 (342)
T PF06433_consen 148 RG-FSMLCGDGSLLTVTLDADGKE-AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS---AKFGKP 222 (342)
T ss_dssp TE-EEEEETTSCEEEEEETSTSSE-EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS---EEEEEE
T ss_pred Cc-eEEEecCCceEEEEECCCCCE-eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc---ccccCc
Confidence 22 2222223333333 2222221 2333457777665432222111111111224568888875311111 111112
Q ss_pred EeCCC-----CceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEe---c------CCCeEEEEeCCCCceEEccCCCcc
Q 016421 256 FDLET-----RKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVE---Y------LTNMVKKYDKLKNTWDVLGRLPVR 319 (390)
Q Consensus 256 yd~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~g---g------~~~~v~~yd~~~~~W~~v~~~~~~ 319 (390)
+.+.+ ..|+. + ....++.. .++||++- + ....||+||+.+.+ ++..++..
T Consensus 223 ~~~~t~~e~~~~WrP-----------G-G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k--rv~Ri~l~ 288 (342)
T PF06433_consen 223 WSLLTDAEKADGWRP-----------G-GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK--RVARIPLE 288 (342)
T ss_dssp EESS-HHHHHTTEEE-------------SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE--EEEEEEEE
T ss_pred ccccCccccccCcCC-----------c-ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe--EEEEEeCC
Confidence 22222 34542 1 11123433 57999983 1 23589999999986 33322221
Q ss_pred ccCCCcceeEEEEeCC--EEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 320 ADLSNGWGLAFKACGN--ELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 320 ~~~~~~~~~~~~~~~~--~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
... .+.++ .-++ .||.+.+.++ .+.+||..+
T Consensus 289 ~~~---~Si~V-sqd~~P~L~~~~~~~~------~l~v~D~~t 321 (342)
T PF06433_consen 289 HPI---DSIAV-SQDDKPLLYALSAGDG------TLDVYDAAT 321 (342)
T ss_dssp EEE---SEEEE-ESSSS-EEEEEETTTT------EEEEEETTT
T ss_pred Ccc---ceEEE-ccCCCcEEEEEcCCCC------eEEEEeCcC
Confidence 110 11222 2233 4676644332 688999988
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=94.81 E-value=2.8 Score=37.37 Aligned_cols=141 Identities=18% Similarity=0.151 Sum_probs=67.8
Q ss_pred EEEEcccccCCeEEEEECCCCcEeecCCC-CCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEE-cCCCC
Q 016421 145 LLVFGRELFDFAIWKYSLVFRSWMKCEGM-NHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM-LPSMH 222 (390)
Q Consensus 145 iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~-~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~~ 222 (390)
+|+.++. ...+.+||+.+++-...-.. ..++. .....-+..+|+.++. ...+.+||..+++... ++...
T Consensus 3 ~~~s~~~--d~~v~~~d~~t~~~~~~~~~~~~~~~-l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~ 73 (300)
T TIGR03866 3 AYVSNEK--DNTISVIDTATLEVTRTFPVGQRPRG-ITLSKDGKLLYVCASD------SDTIQVIDLATGEVIGTLPSGP 73 (300)
T ss_pred EEEEecC--CCEEEEEECCCCceEEEEECCCCCCc-eEECCCCCEEEEEECC------CCeEEEEECCCCcEEEeccCCC
Confidence 4544442 35788889887754222111 11221 1111113457777653 2458889998887644 22111
Q ss_pred CCCcCceEEE-ECC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCC-Ce
Q 016421 223 SPRRLCSGFF-MDG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT-NM 299 (390)
Q Consensus 223 ~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~-~~ 299 (390)
.+ ...+. -++ .+|+.++.+ ..+..||+.+.+- +..++.... . ......-+|.+++++... ..
T Consensus 74 ~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~--~~~~~~~~~--~--~~~~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 74 DP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKV--LAEIPVGVE--P--EGMAVSPDGKIVVNTSETTNM 138 (300)
T ss_pred Cc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeE--EeEeeCCCC--c--ceEEECCCCCEEEEEecCCCe
Confidence 11 12222 244 466654322 3578899987542 222211100 0 111223466666665433 45
Q ss_pred EEEEeCCCCc
Q 016421 300 VKKYDKLKNT 309 (390)
Q Consensus 300 v~~yd~~~~~ 309 (390)
+..||..+.+
T Consensus 139 ~~~~d~~~~~ 148 (300)
T TIGR03866 139 AHFIDTKTYE 148 (300)
T ss_pred EEEEeCCCCe
Confidence 6678877654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.32 E-value=1 Score=42.23 Aligned_cols=259 Identities=14% Similarity=0.146 Sum_probs=123.5
Q ss_pred CCCCChHHHHHHHhhhccccchhhhHhhcH---HHHHHhhcCCchhhhhhcCccccEEEEEeC-CCeeEEEecCCCceee
Q 016421 46 LLPGLVDDVALNCLAFACTSDYASLLFINK---RFHKLIKSGYLYGLRKQLGIVEHWVYLVCD-PRGWEAFDPMKKKWMA 121 (390)
Q Consensus 46 ~~~~LP~dl~~~iL~rlp~~~l~~~~~V~k---~w~~l~~s~~~~~~r~~~~~~~~~l~~~~~-~~~~~~~d~~~~~W~~ 121 (390)
.-|.-|+|++.-+-+|+..-+. +-+.+.| +|+..+.+-.|. .+..|+..|+ ...+..||..+.. .
T Consensus 34 fsp~~P~d~aVt~S~rvqly~~-~~~~~~k~~srFk~~v~s~~fR--------~DG~LlaaGD~sG~V~vfD~k~r~--i 102 (487)
T KOG0310|consen 34 FSPKHPYDFAVTSSVRVQLYSS-VTRSVRKTFSRFKDVVYSVDFR--------SDGRLLAAGDESGHVKVFDMKSRV--I 102 (487)
T ss_pred cCCCCCCceEEecccEEEEEec-chhhhhhhHHhhccceeEEEee--------cCCeEEEccCCcCcEEEeccccHH--H
Confidence 4567888988888888775432 2334444 344445555443 3566777775 5677889944421 1
Q ss_pred CCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEe-ec-CCCCCCCcceeeeeeCCEEEEEeccCCCC
Q 016421 122 LPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWM-KC-EGMNHPRCLFGSGSLGSIAIIAGGSDKNG 199 (390)
Q Consensus 122 l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~-~~-~~~~~~r~~~~~~~~~~~lyv~GG~~~~~ 199 (390)
+-.+.....+- ........++.+++.|++.. .+-.+|..+..-. .+ ..--.-|+ .+....++.|++-||+++.
T Consensus 103 LR~~~ah~apv-~~~~f~~~d~t~l~s~sDd~--v~k~~d~s~a~v~~~l~~htDYVR~-g~~~~~~~hivvtGsYDg~- 177 (487)
T KOG0310|consen 103 LRQLYAHQAPV-HVTKFSPQDNTMLVSGSDDK--VVKYWDLSTAYVQAELSGHTDYVRC-GDISPANDHIVVTGSYDGK- 177 (487)
T ss_pred HHHHhhccCce-eEEEecccCCeEEEecCCCc--eEEEEEcCCcEEEEEecCCcceeEe-eccccCCCeEEEecCCCce-
Confidence 11111111110 00112235788888887542 2334444443311 11 11111222 1333457889999998864
Q ss_pred CccceEEEEECCCC-cEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcC
Q 016421 200 HVLKSAELYDSTTG-RWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAA 277 (390)
Q Consensus 200 ~~~~~~~~yd~~t~-~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~ 277 (390)
+-.||..+. .|.. .+.....--....+ .|.+++..|- +.+-++|+.++.= .+..+.. +.
T Consensus 178 -----vrl~DtR~~~~~v~--elnhg~pVe~vl~lpsgs~iasAgG-------n~vkVWDl~~G~q-ll~~~~~----H~ 238 (487)
T KOG0310|consen 178 -----VRLWDTRSLTSRVV--ELNHGCPVESVLALPSGSLIASAGG-------NSVKVWDLTTGGQ-LLTSMFN----HN 238 (487)
T ss_pred -----EEEEEeccCCceeE--EecCCCceeeEEEcCCCCEEEEcCC-------CeEEEEEecCCce-ehhhhhc----cc
Confidence 677888766 4432 11111101122223 3233333221 2355566654331 1111111 01
Q ss_pred CCCCEEEEE-CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCC
Q 016421 278 QAPPLVAVV-DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRG 345 (390)
Q Consensus 278 ~~~~~~~~~-~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~ 345 (390)
....++... ++.=.+-|+--+.|-+|| +..|..+..+..+..- ... .+.-++.-.++|..++
T Consensus 239 KtVTcL~l~s~~~rLlS~sLD~~VKVfd--~t~~Kvv~s~~~~~pv---Lsi-avs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 239 KTVTCLRLASDSTRLLSGSLDRHVKVFD--TTNYKVVHSWKYPGPV---LSI-AVSPDDQTVVIGMSNG 301 (487)
T ss_pred ceEEEEEeecCCceEeecccccceEEEE--ccceEEEEeeecccce---eeE-EecCCCceEEEecccc
Confidence 111122222 233334445557788998 6677777655433211 112 2234677777776553
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.21 E-value=4.3 Score=36.98 Aligned_cols=178 Identities=15% Similarity=0.015 Sum_probs=92.3
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc-EEEcCC----CCCCCcCce
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR-WEMLPS----MHSPRRLCS 229 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~----~~~~r~~~~ 229 (390)
+.+++||+.++.-+.... |.........--++.|++.. ..+..+++.++. |+.+.+ .+..|.+=.
T Consensus 47 ~~i~r~~~~~g~~~~~~~-p~~~~~~~~~d~~g~Lv~~~---------~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~ 116 (307)
T COG3386 47 GRIHRLDPETGKKRVFPS-PGGFSSGALIDAGGRLIACE---------HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDG 116 (307)
T ss_pred CeEEEecCCcCceEEEEC-CCCcccceeecCCCeEEEEc---------cccEEEeccCCceeEEeccccCCCCcCCCCce
Confidence 478888888665444322 22222222222244555542 224556665443 355432 233455555
Q ss_pred EEEECCEEEEEecc-----cCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECC-EEEEEecCCCeEEEE
Q 016421 230 GFFMDGKFYVIGGM-----SSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDN-QLYAVEYLTNMVKKY 303 (390)
Q Consensus 230 ~~~~~~~iyv~GG~-----~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g-~l~v~gg~~~~v~~y 303 (390)
.+.-+|.+|+-.-. .........+|+||+. ....++..-.. ...+..+..-++ .+|+.....+.+++|
T Consensus 117 ~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~-----~~~NGla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 117 VVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDL-----TIPNGLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred eEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcE-----EecCceEECCCCCEEEEEeCCCCeEEEE
Confidence 55667887775432 1112234579999994 55554432211 011112333445 799998888999999
Q ss_pred eCCC------C--ceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016421 304 DKLK------N--TWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 304 d~~~------~--~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
+... + .+.....-+..+. -.++.-+|.||+.....+ ..|.+|+|+
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PD------G~~vDadG~lw~~a~~~g-----~~v~~~~pd 243 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPD------GMAVDADGNLWVAAVWGG-----GRVVRFNPD 243 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCC------ceEEeCCCCEEEecccCC-----ceEEEECCC
Confidence 7753 1 1222222111122 134456889997555443 148899995
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=94.21 E-value=3.4 Score=35.83 Aligned_cols=183 Identities=15% Similarity=0.143 Sum_probs=82.2
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCC-cceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR-CLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r-~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++..++.++. ...+.+||..+.+.... +.... ....+... ++.+++.++.+ ..+.+||..+..-...
T Consensus 62 ~~~~l~~~~~--~~~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~- 130 (289)
T cd00200 62 DGTYLASGSS--DKTIRLWDLETGECVRT--LTGHTSYVSSVAFSPDGRILSSSSRD------KTIKVWDVETGKCLTT- 130 (289)
T ss_pred CCCEEEEEcC--CCeEEEEEcCcccceEE--EeccCCcEEEEEEcCCCCEEEEecCC------CeEEEEECCCcEEEEE-
Confidence 3334455543 45788899877532111 11111 11122222 34566665522 3488899885543221
Q ss_pred CCCCCCcCce-EEEEC-CEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecC
Q 016421 220 SMHSPRRLCS-GFFMD-GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYL 296 (390)
Q Consensus 220 ~~~~~r~~~~-~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~ 296 (390)
+........ ..... +.+++.++.+ ..+..||+.+.+-.. .+... ......+.. -+++.+++++.
T Consensus 131 -~~~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~~--~~~~~----~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 131 -LRGHTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTGKCVA--TLTGH----TGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred -eccCCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEccccccce--eEecC----ccccceEEECCCcCEEEEecC
Confidence 111111122 22233 4444444322 246778887543211 11110 001112332 34445666666
Q ss_pred CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeC-CEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 297 TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACG-NELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 297 ~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~-~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.+.+||..+.+-.. .+..... .-.++.... +.+++.++.++ .+.+||..+
T Consensus 198 ~~~i~i~d~~~~~~~~--~~~~~~~----~i~~~~~~~~~~~~~~~~~~~------~i~i~~~~~ 250 (289)
T cd00200 198 DGTIKLWDLSTGKCLG--TLRGHEN----GVNSVAFSPDGYLLASGSEDG------TIRVWDLRT 250 (289)
T ss_pred CCcEEEEECCCCceec--chhhcCC----ceEEEEEcCCCcEEEEEcCCC------cEEEEEcCC
Confidence 7889999987644332 2211110 112233333 55666655332 477888765
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=4.6 Score=37.11 Aligned_cols=257 Identities=10% Similarity=0.036 Sum_probs=115.2
Q ss_pred ccEEEEEeC-CCeeEEEecC-CCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccCCeEEEEECCCCc-E-eecC
Q 016421 97 EHWVYLVCD-PRGWEAFDPM-KKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFDFAIWKYSLVFRS-W-MKCE 171 (390)
Q Consensus 97 ~~~l~~~~~-~~~~~~~d~~-~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~t~~-W-~~~~ 171 (390)
...||+... ...+..|+.. ..++..+...+..... + ...+.. ++.+|+.+. ..+.+.+|+..++. . ..+.
T Consensus 46 ~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p--~-~i~~~~~g~~l~v~~~--~~~~v~v~~~~~~g~~~~~~~ 120 (330)
T PRK11028 46 KRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSP--T-HISTDHQGRFLFSASY--NANCVSVSPLDKDGIPVAPIQ 120 (330)
T ss_pred CCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCc--e-EEEECCCCCEEEEEEc--CCCeEEEEEECCCCCCCCcee
Confidence 455666542 4555566665 3445444333221111 0 112222 345666542 24577778775421 1 1122
Q ss_pred CCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCC-cEEEcC----CCCCCCcCceEEEE-C-CEEEEEec
Q 016421 172 GMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTG-RWEMLP----SMHSPRRLCSGFFM-D-GKFYVIGG 242 (390)
Q Consensus 172 ~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~----~~~~~r~~~~~~~~-~-~~iyv~GG 242 (390)
..+.....|.++.. +..+|+..- ....+.+||..++ ...... ..+.......++.. + ..+|+...
T Consensus 121 ~~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 121 IIEGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred eccCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec
Confidence 22222223333332 346666542 1356899998763 222110 11112112223333 3 36777632
Q ss_pred ccCCCccCceEEEEeCC--CCceEEc---cCCCCCCCCcCCCCCEEE-EECC-EEEEEecCCCeEEEEeCCC--CceEEc
Q 016421 243 MSSPTVSLTCGEEFDLE--TRKWRKI---EGMYPNVNRAAQAPPLVA-VVDN-QLYAVEYLTNMVKKYDKLK--NTWDVL 313 (390)
Q Consensus 243 ~~~~~~~~~~v~~yd~~--~~~W~~~---~~~~~~~~~~~~~~~~~~-~~~g-~l~v~gg~~~~v~~yd~~~--~~W~~v 313 (390)
..+.+.+||.. +++.+.+ ..+|.... ..+....+. .-+| .+|+.....+.+.+|+.+. ..++.+
T Consensus 195 ------~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~ 267 (330)
T PRK11028 195 ------LNSSVDVWQLKDPHGEIECVQTLDMMPADFS-DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE 267 (330)
T ss_pred ------CCCEEEEEEEeCCCCCEEEEEEEecCCCcCC-CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe
Confidence 13456666665 4555443 33332111 122221122 2244 5777655567888887643 456655
Q ss_pred cCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeee--cCCCCCCCCCCceEEecccCccCeEEeeeee
Q 016421 314 GRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSW--CPKSGVNNGTLDWKVLAEKQHVGVFVYNCAV 387 (390)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y--~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~ 387 (390)
...+.....+ +.++..-+..||+.+..++ .|.+| |.++ ..++.++..+ .+..+.++.+
T Consensus 268 ~~~~~~~~p~---~~~~~~dg~~l~va~~~~~------~v~v~~~~~~~------g~l~~~~~~~-~g~~P~~~~~ 327 (330)
T PRK11028 268 GHQPTETQPR---GFNIDHSGKYLIAAGQKSH------HISVYEIDGET------GLLTELGRYA-VGQGPMWVSV 327 (330)
T ss_pred EEEeccccCC---ceEECCCCCEEEEEEccCC------cEEEEEEcCCC------CcEEEccccc-cCCCceEEEE
Confidence 5444332111 1233233557777654221 34455 4444 4577776653 3555555544
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=94.16 E-value=6.5 Score=38.88 Aligned_cols=210 Identities=15% Similarity=0.121 Sum_probs=110.2
Q ss_pred cccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCcc----cCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--E
Q 016421 96 VEHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDEC----FNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--W 167 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~----~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W 167 (390)
.+..+|+......++++|..+. .|..-...+.... ...........++.||+... ...++.+|..|++ |
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~---dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL---DARLVALDAKTGKVVW 144 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC---CCEEEEEECCCCCEEe
Confidence 3678888766677899998865 5865433321110 00011223455778776442 3478999998875 7
Q ss_pred eecCC-CCCC-CcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEc--CCCCC------------------
Q 016421 168 MKCEG-MNHP-RCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEML--PSMHS------------------ 223 (390)
Q Consensus 168 ~~~~~-~~~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~--~~~~~------------------ 223 (390)
+.-.. +... .....-++.+++||+-...... .....+..||.+|++ |+.- +.-+.
T Consensus 145 ~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~-~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVVKGKVITGISGGEF-GVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred ecccccccccccccCCcEEECCEEEEeeccccc-CCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 54321 1111 1112334567887775322111 123568899999886 8642 21100
Q ss_pred --CCcCc------eEEEE---CCEEEEEeccc----C-----CCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCC
Q 016421 224 --PRRLC------SGFFM---DGKFYVIGGMS----S-----PTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPP 281 (390)
Q Consensus 224 --~r~~~------~~~~~---~~~iyv~GG~~----~-----~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~ 281 (390)
....+ ....+ .+.||+--|.. . .+.+.+++...|++|++ |.--...........-..+
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 00011 11234 34677765541 1 12346789999999885 7632211111111111222
Q ss_pred EEEE--ECCE---EEEEecCCCeEEEEeCCCCc
Q 016421 282 LVAV--VDNQ---LYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 282 ~~~~--~~g~---l~v~gg~~~~v~~yd~~~~~ 309 (390)
.++. .+|+ +++.+...+.++++|..+.+
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 3443 3554 67777777788888887754
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=93.51 E-value=5.2 Score=35.59 Aligned_cols=178 Identities=14% Similarity=-0.026 Sum_probs=83.1
Q ss_pred CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeC-CEEEEEcccccCCeEEEEECCCCcEee-cCCCCCCCcceeee
Q 016421 106 PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVG-SELLVFGRELFDFAIWKYSLVFRSWMK-CEGMNHPRCLFGSG 183 (390)
Q Consensus 106 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~-~~iy~~Gg~~~~~~~~~yd~~t~~W~~-~~~~~~~r~~~~~~ 183 (390)
...+..+|+.+.+....-..... . ....+..+ ..+|+.++ ....+.+||..+.+... ++....+ ......
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~--~---~~l~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~ 81 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQR--P---RGITLSKDGKLLYVCAS--DSDTIQVIDLATGEVIGTLPSGPDP-ELFALH 81 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCC--C---CceEECCCCCEEEEEEC--CCCeEEEEECCCCcEEEeccCCCCc-cEEEEC
Confidence 45677788876653222111110 0 11122223 35666654 24578899998876643 2221111 111111
Q ss_pred eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCc
Q 016421 184 SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 184 ~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
.-++.+|+.++. ...+.+||+.+.+-. ..++........+. -+|++++++..+. ..+..||..+.+
T Consensus 82 ~~g~~l~~~~~~------~~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~dg~~l~~~~~~~-----~~~~~~d~~~~~ 148 (300)
T TIGR03866 82 PNGKILYIANED------DNLVTVIDIETRKVL--AEIPVGVEPEGMAVSPDGKIVVNTSETT-----NMAHFIDTKTYE 148 (300)
T ss_pred CCCCEEEEEcCC------CCeEEEEECCCCeEE--eEeeCCCCcceEEECCCCCEEEEEecCC-----CeEEEEeCCCCe
Confidence 123456666432 235888999876422 11121111122232 3677776654321 235557877654
Q ss_pred eEEccCCCCCCCCcCCCCCEEEEECCEEEEEe-cCCCeEEEEeCCCCce
Q 016421 263 WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVE-YLTNMVKKYDKLKNTW 310 (390)
Q Consensus 263 W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~g-g~~~~v~~yd~~~~~W 310 (390)
-......... . .......+++.++++ ...+.+..||.++.+.
T Consensus 149 ~~~~~~~~~~----~--~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 149 IVDNVLVDQR----P--RFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred EEEEEEcCCC----c--cEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 3221111110 1 111223355544444 3467899999987653
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=93.49 E-value=4.9 Score=35.27 Aligned_cols=181 Identities=11% Similarity=0.032 Sum_probs=95.2
Q ss_pred CCEEEEEcccc-cCCeEEEEEC----CCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEE
Q 016421 142 GSELLVFGREL-FDFAIWKYSL----VFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE 216 (390)
Q Consensus 142 ~~~iy~~Gg~~-~~~~~~~yd~----~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~ 216 (390)
.+++|+..+.. ....++.|.. ..+++.+.-.+|.+..+.+.++++|.+|..-.. ...+..||+.+++=.
T Consensus 34 ~~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~------s~~iiKydL~t~~v~ 107 (255)
T smart00284 34 KSLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFN------SHDICRFDLTTETYQ 107 (255)
T ss_pred CceEEEEccccCCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecC------CccEEEEECCCCcEE
Confidence 35677765542 2345555532 234444434567777778899999999996432 456999999998754
Q ss_pred EcCCCCCC----Cc-----Cc---eEEEECCEEEEEecccCCCccCceEEEEeCCCC----ceEEccCCCCCCCCcCCCC
Q 016421 217 MLPSMHSP----RR-----LC---SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR----KWRKIEGMYPNVNRAAQAP 280 (390)
Q Consensus 217 ~~~~~~~~----r~-----~~---~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~----~W~~~~~~~~~~~~~~~~~ 280 (390)
....+|.+ +. ++ -.++=++-|+++=...... ..-.+-..|+.+- +|..- .+.. ..
T Consensus 108 ~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~-g~ivvSkLnp~tL~ve~tW~T~--~~k~------sa 178 (255)
T smart00284 108 KEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNA-GKIVISKLNPATLTIENTWITT--YNKR------SA 178 (255)
T ss_pred EEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCC-CCEEEEeeCcccceEEEEEEcC--CCcc------cc
Confidence 32223321 11 11 1223334455553222111 0112234666654 56552 2221 11
Q ss_pred CEEEEECCEEEEEec----CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe---CCEEEEEc
Q 016421 281 PLVAVVDNQLYAVEY----LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC---GNELLVVG 341 (390)
Q Consensus 281 ~~~~~~~g~l~v~gg----~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~---~~~lyv~G 341 (390)
..+..+=|.||++.. ...-.+.||..+++ ..-..+|...... .++++.+ +.+||+--
T Consensus 179 ~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~-~~~~~i~f~n~y~---~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 179 SNAFMICGILYVTRSLGSKGEKVFYAYDTNTGK-EGHLDIPFENMYE---YISMLDYNPNDRKLYAWN 242 (255)
T ss_pred cccEEEeeEEEEEccCCCCCcEEEEEEECCCCc-cceeeeeeccccc---cceeceeCCCCCeEEEEe
Confidence 135566789999963 22346789998876 2223344443322 1334333 56777765
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.47 E-value=5.1 Score=35.33 Aligned_cols=187 Identities=10% Similarity=0.049 Sum_probs=101.6
Q ss_pred CeEEEEECCCCcEeecCCC-CCCCcceeeeeeC--CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEE
Q 016421 155 FAIWKYSLVFRSWMKCEGM-NHPRCLFGSGSLG--SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGF 231 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~-~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~ 231 (390)
+.+-++|+.+..-++.+-. ..+-...-..+++ +.++..|-....+ .+||.++.-+..+ .|..-.....+
T Consensus 124 ~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yG-------rLdPa~~~i~vfp-aPqG~gpyGi~ 195 (353)
T COG4257 124 LAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYG-------RLDPARNVISVFP-APQGGGPYGIC 195 (353)
T ss_pred ceeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccce-------ecCcccCceeeec-cCCCCCCcceE
Confidence 3788899988877665432 1222333344443 5676665322111 4566666544332 23222222333
Q ss_pred -EECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCce
Q 016421 232 -FMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTW 310 (390)
Q Consensus 232 -~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W 310 (390)
.-+|.+|+..-. -+-+...|+.+..=..++....... ..|. .-+--.|++++..-....+++|||...+|
T Consensus 196 atpdGsvwyasla------gnaiaridp~~~~aev~p~P~~~~~-gsRr--iwsdpig~~wittwg~g~l~rfdPs~~sW 266 (353)
T COG4257 196 ATPDGSVWYASLA------GNAIARIDPFAGHAEVVPQPNALKA-GSRR--IWSDPIGRAWITTWGTGSLHRFDPSVTSW 266 (353)
T ss_pred ECCCCcEEEEecc------ccceEEcccccCCcceecCCCcccc-cccc--cccCccCcEEEeccCCceeeEeCcccccc
Confidence 358899886322 2345667888775444433222111 1111 12345678888876778999999999999
Q ss_pred EEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecc
Q 016421 311 DVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAE 374 (390)
Q Consensus 311 ~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~ 374 (390)
.+-. ||...-. .+. -.|.-.|++++---.. ..|..|||++ .+.+++..
T Consensus 267 ~eyp-LPgs~ar--pys-~rVD~~grVW~sea~a------gai~rfdpet------a~ftv~p~ 314 (353)
T COG4257 267 IEYP-LPGSKAR--PYS-MRVDRHGRVWLSEADA------GAIGRFDPET------ARFTVLPI 314 (353)
T ss_pred eeee-CCCCCCC--cce-eeeccCCcEEeecccc------CceeecCccc------ceEEEecC
Confidence 9843 3322111 121 2333456676644322 2588899998 67877754
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=6.4 Score=36.12 Aligned_cols=193 Identities=11% Similarity=0.052 Sum_probs=88.7
Q ss_pred EEEEEe-CCCeeEEEecCC-CceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccCCeEEEEECC-CCcEeecCCCC
Q 016421 99 WVYLVC-DPRGWEAFDPMK-KKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFDFAIWKYSLV-FRSWMKCEGMN 174 (390)
Q Consensus 99 ~l~~~~-~~~~~~~~d~~~-~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~-t~~W~~~~~~~ 174 (390)
.+|+.. ....+..||..+ .++..+..++...... ...+.. ++.+|+.+. ....+..|+.. .+++..+...+
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~---~l~~spd~~~lyv~~~--~~~~i~~~~~~~~g~l~~~~~~~ 77 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQ---PMVISPDKRHLYVGVR--PEFRVLSYRIADDGALTFAAESP 77 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCc---cEEECCCCCEEEEEEC--CCCcEEEEEECCCCceEEeeeec
Confidence 355553 356677777753 4555444443211111 112222 345666543 24566667765 44565443332
Q ss_pred CCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCCCCcCceEEEE-CC-EEEEEecccCCCc
Q 016421 175 HPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHSPRRLCSGFFM-DG-KFYVIGGMSSPTV 248 (390)
Q Consensus 175 ~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~ 248 (390)
.......++.. +..+|+.... ...+.+||..++. .+.+...+.....|.++.. ++ .+|+..-
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~------ 145 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYN------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL------ 145 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcC------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC------
Confidence 22111122222 3456666421 2457778775331 1122222222223444333 44 5666532
Q ss_pred cCceEEEEeCCCCc-eEEcc----CCCCCCCCcCCCCCEEEE-EC-CEEEEEecCCCeEEEEeCC--CCceEEc
Q 016421 249 SLTCGEEFDLETRK-WRKIE----GMYPNVNRAAQAPPLVAV-VD-NQLYAVEYLTNMVKKYDKL--KNTWDVL 313 (390)
Q Consensus 249 ~~~~v~~yd~~~~~-W~~~~----~~~~~~~~~~~~~~~~~~-~~-g~l~v~gg~~~~v~~yd~~--~~~W~~v 313 (390)
..+.+.+||+.+.. ..... ..+.. .+++ .++. -+ ..+|+.....+.+.+||.. +++.+.+
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g--~~p~---~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEG--AGPR---HMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceecCCC--CCCc---eEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence 23467889887632 22110 11111 1111 2333 23 3678887767889888876 4455443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=9.2 Score=40.03 Aligned_cols=182 Identities=12% Similarity=0.116 Sum_probs=89.3
Q ss_pred EEEEEcccccCCeEEEEECCCCcEeecCCCCCC-Ccceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 144 ELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHP-RCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 144 ~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~-r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
..++.++ .+..+.+||..+++-.. .+... ..-.+++. .++.+++.||.++ .+.+||..++.-...
T Consensus 546 ~~las~~--~Dg~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~-- 613 (793)
T PLN00181 546 SQVASSN--FEGVVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQGVSIGT-- 613 (793)
T ss_pred CEEEEEe--CCCeEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCCcEEEE--
Confidence 3444444 24578889987764322 11111 11122322 2456777777543 478888876542211
Q ss_pred CCCCCcCceEEE---ECCEEEEEecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEEEECCEEEEEec
Q 016421 221 MHSPRRLCSGFF---MDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY 295 (390)
Q Consensus 221 ~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg 295 (390)
+... .....+. -++.+++.|+.+ ..+..||+.+.. ...+... ......+...++..++.++
T Consensus 614 ~~~~-~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~h-------~~~V~~v~f~~~~~lvs~s 679 (793)
T PLN00181 614 IKTK-ANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIGH-------SKTVSYVRFVDSSTLVSSS 679 (793)
T ss_pred EecC-CCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecCC-------CCCEEEEEEeCCCEEEEEE
Confidence 1111 1111222 246777777654 357789987643 1111111 1011123345677777777
Q ss_pred CCCeEEEEeCCCC----ceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 296 LTNMVKKYDKLKN----TWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 296 ~~~~v~~yd~~~~----~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.-+.+..||.... .|..+..+...... ........++.+++.|+.++ .|.+|+...
T Consensus 680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~---i~~v~~s~~~~~lasgs~D~------~v~iw~~~~ 739 (793)
T PLN00181 680 TDNTLKLWDLSMSISGINETPLHSFMGHTNV---KNFVGLSVSDGYIATGSETN------EVFVYHKAF 739 (793)
T ss_pred CCCEEEEEeCCCCccccCCcceEEEcCCCCC---eeEEEEcCCCCEEEEEeCCC------EEEEEECCC
Confidence 7788999998643 24333322211100 00111233567777777553 477777654
|
|
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=93.13 E-value=1.5 Score=34.13 Aligned_cols=83 Identities=11% Similarity=0.052 Sum_probs=55.2
Q ss_pred eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC---CCCCcCceEEEECCEEEEEecccCCCccCceEEEE-eCC
Q 016421 184 SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM---HSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEF-DLE 259 (390)
Q Consensus 184 ~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y-d~~ 259 (390)
.++|.+|-...... .....+..||..+.+|+.+... .........+.++|+|-++.-........-.+++. |..
T Consensus 3 cinGvly~~a~~~~--~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 3 CINGVLYWLAWSED--SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EECcEEEeEEEECC--CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 45888888876521 2357799999999999887532 22344566778999998886544322123456666 567
Q ss_pred CCceEEccC
Q 016421 260 TRKWRKIEG 268 (390)
Q Consensus 260 ~~~W~~~~~ 268 (390)
+++|++...
T Consensus 81 k~~Wsk~~~ 89 (129)
T PF08268_consen 81 KQEWSKKHI 89 (129)
T ss_pred cceEEEEEE
Confidence 789987643
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=8.7 Score=36.79 Aligned_cols=146 Identities=10% Similarity=-0.030 Sum_probs=83.9
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 233 (390)
..++|++|..+++=+.+...+..........-+.+|.+.-...+ ..+++.+|..++.++.+...+..-... ...-
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~~~~d~~p-~~SP 286 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNYPGIDVNG-NFVE 286 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccCCCccCcc-EECC
Confidence 45899999988877766543221111111112345655543322 367999999999999886544311111 1222
Q ss_pred CC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCE-EEEEecC--------CCeEEEE
Q 016421 234 DG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQ-LYAVEYL--------TNMVKKY 303 (390)
Q Consensus 234 ~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~-l~v~gg~--------~~~v~~y 303 (390)
+| +||+.....+ ...++.+|..+++.+++..... ... ...-+|+ |...... ...++.+
T Consensus 287 DG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~-------~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~ 354 (419)
T PRK04043 287 DDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK-------NNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLI 354 (419)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC-------cCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEE
Confidence 44 6777654322 3578999999988876643211 111 2233444 3333221 2578999
Q ss_pred eCCCCceEEccCC
Q 016421 304 DKLKNTWDVLGRL 316 (390)
Q Consensus 304 d~~~~~W~~v~~~ 316 (390)
|++++.++.+...
T Consensus 355 d~~~g~~~~LT~~ 367 (419)
T PRK04043 355 STNSDYIRRLTAN 367 (419)
T ss_pred ECCCCCeEECCCC
Confidence 9999999888653
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.88 E-value=8.6 Score=36.36 Aligned_cols=230 Identities=11% Similarity=0.103 Sum_probs=111.9
Q ss_pred cccEEEEEeCCCeeEEEecCCCceee-CCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcE-eec--C
Q 016421 96 VEHWVYLVCDPRGWEAFDPMKKKWMA-LPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSW-MKC--E 171 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~~W~~-l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W-~~~--~ 171 (390)
..+.-++......+..|+..+..-.+ +..... ......+..++.+++.|+. +..+-+||..++.- +.+ .
T Consensus 37 ~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~-----~v~s~~fR~DG~LlaaGD~--sG~V~vfD~k~r~iLR~~~ah 109 (487)
T KOG0310|consen 37 KHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKD-----VVYSVDFRSDGRLLAAGDE--SGHVKVFDMKSRVILRQLYAH 109 (487)
T ss_pred CCCCceEEecccEEEEEecchhhhhhhHHhhcc-----ceeEEEeecCCeEEEccCC--cCcEEEeccccHHHHHHHhhc
Confidence 34555555566677778766543211 111111 1112234457999999874 45788899444221 111 1
Q ss_pred CCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcC---ceEEEECCEEEEEecccCCCc
Q 016421 172 GMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRL---CSGFFMDGKFYVIGGMSSPTV 248 (390)
Q Consensus 172 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~---~~~~~~~~~iyv~GG~~~~~~ 248 (390)
..|..+. --...++.+++.|+-+. .+..+|..+.. .. ..+.....+ .+....++.|.+.||+++
T Consensus 110 ~apv~~~--~f~~~d~t~l~s~sDd~------v~k~~d~s~a~-v~-~~l~~htDYVR~g~~~~~~~hivvtGsYDg--- 176 (487)
T KOG0310|consen 110 QAPVHVT--KFSPQDNTMLVSGSDDK------VVKYWDLSTAY-VQ-AELSGHTDYVRCGDISPANDHIVVTGSYDG--- 176 (487)
T ss_pred cCceeEE--EecccCCeEEEecCCCc------eEEEEEcCCcE-EE-EEecCCcceeEeeccccCCCeEEEecCCCc---
Confidence 1122222 22345889999887432 23445554444 21 122222111 223345789999999875
Q ss_pred cCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEE-ecCCCeEEEEeCCCCceEEccCCCccccCCCcc
Q 016421 249 SLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAV-EYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGW 326 (390)
Q Consensus 249 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~-gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~ 326 (390)
.|-.||+.+.+ ..+..+....... .+..+ +|.+++. || +.+-+||..++. ..+..+......
T Consensus 177 ---~vrl~DtR~~~-~~v~elnhg~pVe-----~vl~lpsgs~iasAgG--n~vkVWDl~~G~-qll~~~~~H~Kt---- 240 (487)
T KOG0310|consen 177 ---KVRLWDTRSLT-SRVVELNHGCPVE-----SVLALPSGSLIASAGG--NSVKVWDLTTGG-QLLTSMFNHNKT---- 240 (487)
T ss_pred ---eEEEEEeccCC-ceeEEecCCCcee-----eEEEcCCCCEEEEcCC--CeEEEEEecCCc-eehhhhhcccce----
Confidence 35568888874 2222222211000 13333 3344443 44 578889987543 122222211110
Q ss_pred eeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016421 327 GLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 327 ~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
-+++... ++.=.+-||-++ .+.+||.. .|+.+-++
T Consensus 241 VTcL~l~s~~~rLlS~sLD~------~VKVfd~t--------~~Kvv~s~ 276 (487)
T KOG0310|consen 241 VTCLRLASDSTRLLSGSLDR------HVKVFDTT--------NYKVVHSW 276 (487)
T ss_pred EEEEEeecCCceEeeccccc------ceEEEEcc--------ceEEEEee
Confidence 1222222 345555566554 37789853 47777654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=92.69 E-value=6.1 Score=34.17 Aligned_cols=143 Identities=16% Similarity=0.135 Sum_probs=65.9
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEee-cCCCCCCCcceeeeeeC-CEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 143 SELLVFGRELFDFAIWKYSLVFRSWMK-CEGMNHPRCLFGSGSLG-SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~-~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
+.+++.++ ....+.+||..+.+-.. +.. .......+.... +.+++.|+.+ ..+.+||..+++-.. .
T Consensus 105 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~~--~ 172 (289)
T cd00200 105 GRILSSSS--RDKTIKVWDVETGKCLTTLRG--HTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTGKCVA--T 172 (289)
T ss_pred CCEEEEec--CCCeEEEEECCCcEEEEEecc--CCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEccccccce--e
Confidence 45555554 24578899987554322 221 111111222222 3444444322 347889887543211 1
Q ss_pred CCCCCcCc-eEEEE-CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEEC-CEEEEEecCC
Q 016421 221 MHSPRRLC-SGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVD-NQLYAVEYLT 297 (390)
Q Consensus 221 ~~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-g~l~v~gg~~ 297 (390)
+....... ..... +++.+++++.+ ..+..||..+.+-... +... ......+.... +.+++.++..
T Consensus 173 ~~~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~~~--~~~~----~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 173 LTGHTGEVNSVAFSPDGEKLLSSSSD------GTIKLWDLSTGKCLGT--LRGH----ENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred EecCccccceEEECCCcCEEEEecCC------CcEEEEECCCCceecc--hhhc----CCceEEEEEcCCCcEEEEEcCC
Confidence 11111111 22222 44345555432 2467788876443222 1110 00111233333 5666666557
Q ss_pred CeEEEEeCCCCc
Q 016421 298 NMVKKYDKLKNT 309 (390)
Q Consensus 298 ~~v~~yd~~~~~ 309 (390)
+.+..||..+.+
T Consensus 241 ~~i~i~~~~~~~ 252 (289)
T cd00200 241 GTIRVWDLRTGE 252 (289)
T ss_pred CcEEEEEcCCce
Confidence 889999987643
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=11 Score=36.31 Aligned_cols=182 Identities=12% Similarity=0.021 Sum_probs=92.3
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 233 (390)
...++++|..+++-+.+...+..-.......-+.+|++.....+ ..+++++|..++..+.+..-...-. .....-
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~~~~-~~~wSP 296 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRSNNT-EPTWFP 296 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCCCcC-ceEECC
Confidence 35788888888776666554332221111122345655533222 2458999999988877654322111 111122
Q ss_pred CCE-EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCE-EEEEec--CCCeEEEEeCCCCc
Q 016421 234 DGK-FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQ-LYAVEY--LTNMVKKYDKLKNT 309 (390)
Q Consensus 234 ~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~-l~v~gg--~~~~v~~yd~~~~~ 309 (390)
+|+ |+......+ ...++.+|+.+..-.++...... .......-+|+ |++.+. ....++.+|+++++
T Consensus 297 DG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~~~~------~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 297 DSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWEGSQ------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred CCCEEEEEeCCCC----CceEEEEECCCCCeEEeecCCCC------ccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 554 444332211 24688889988776665322110 01112233444 444432 23468899999999
Q ss_pred eEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 310 WDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 310 W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+..+....... ... ..-+|+.+++.+.++. ...++..+.+.
T Consensus 367 ~~~Lt~~~~~~------~p~-~SpDG~~i~~~s~~~~---~~~l~~~~~~G 407 (429)
T PRK03629 367 VQVLTDTFLDE------TPS-IAPNGTMVIYSSSQGM---GSVLNLVSTDG 407 (429)
T ss_pred eEEeCCCCCCC------Cce-ECCCCCEEEEEEcCCC---ceEEEEEECCC
Confidence 88876421111 122 2346666666554432 22355666543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=91.95 E-value=12 Score=35.66 Aligned_cols=124 Identities=11% Similarity=0.104 Sum_probs=62.4
Q ss_pred cceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCC
Q 016421 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPP 281 (390)
Q Consensus 202 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 281 (390)
..++++++.+.++=+.+.=...+-...++-.-+|.|.|..-....- ..-.+.|-...+--. ..+++... +.
T Consensus 106 taDly~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF--~q~~~lYkv~~dg~~-~e~LnlGp--at---- 176 (668)
T COG4946 106 TADLYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPF--SQWTELYKVNVDGIK-TEPLNLGP--AT---- 176 (668)
T ss_pred cccEEEEeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCCCc--ccceeeeEEccCCce-eeeccCCc--ee----
Confidence 4678899999888777643321111122224578888774433221 111222333222210 11111110 01
Q ss_pred EEEEECCEEEEEe--------------cCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcC
Q 016421 282 LVAVVDNQLYAVE--------------YLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGG 342 (390)
Q Consensus 282 ~~~~~~g~l~v~g--------------g~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG 342 (390)
..+.-+|. .++| |..+.+|+=--...+.+++-.|+...+ +-+.++++||.+..
T Consensus 177 hiv~~dg~-ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS-------~PmIV~~RvYFlsD 243 (668)
T COG4946 177 HIVIKDGI-IVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVS-------SPMIVGERVYFLSD 243 (668)
T ss_pred eEEEeCCE-EEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcC-------CceEEcceEEEEec
Confidence 24455664 4444 344677776555557888877776543 23356777777763
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=91.76 E-value=10 Score=34.69 Aligned_cols=152 Identities=15% Similarity=0.185 Sum_probs=80.8
Q ss_pred CEEEEEeccC-C--CCCcc-ceEEEEECCCC-----cEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEe
Q 016421 187 SIAIIAGGSD-K--NGHVL-KSAELYDSTTG-----RWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFD 257 (390)
Q Consensus 187 ~~lyv~GG~~-~--~~~~~-~~~~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 257 (390)
...+++|... . ..... -.+.+|+.... +.+.+.....+-.-.+.+.++|+|.+..| ..+..|+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~ 113 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYD 113 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEE
Confidence 4566666432 1 11122 56888988875 55555433333223455667888666544 3577788
Q ss_pred CCCCc-eEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCC-CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-C
Q 016421 258 LETRK-WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT-NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-G 334 (390)
Q Consensus 258 ~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~-~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~ 334 (390)
...++ +...+.+..+. ....+.+.++.|++.+... -.+..|+.+.++-..++.-..+. +..++..+ +
T Consensus 114 l~~~~~l~~~~~~~~~~-----~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~-----~v~~~~~l~d 183 (321)
T PF03178_consen 114 LDNSKTLLKKAFYDSPF-----YITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR-----WVTAAEFLVD 183 (321)
T ss_dssp EETTSSEEEEEEE-BSS-----SEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B-----EEEEEEEE-S
T ss_pred ccCcccchhhheecceE-----EEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc-----cEEEEEEecC
Confidence 88877 88777655422 2234667788766655432 24556788666677776433222 23445455 5
Q ss_pred CEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 335 NELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 335 ~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+..++++-..+ .--++.|+++.
T Consensus 184 ~~~~i~~D~~g----nl~~l~~~~~~ 205 (321)
T PF03178_consen 184 EDTIIVGDKDG----NLFVLRYNPEI 205 (321)
T ss_dssp SSEEEEEETTS----EEEEEEE-SS-
T ss_pred CcEEEEEcCCC----eEEEEEECCCC
Confidence 55444444332 22355666544
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.66 E-value=8 Score=33.24 Aligned_cols=188 Identities=11% Similarity=0.080 Sum_probs=101.3
Q ss_pred eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeC--CEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016421 141 VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLG--SIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 141 ~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
.++.=|+.||. +..+.+||..|++--+- +...-.....+.++ ..+.+-|+.+ +++..+|..+++-+.+
T Consensus 69 ~Dnskf~s~Gg--Dk~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~SgsfD------~s~r~wDCRS~s~ePi 138 (307)
T KOG0316|consen 69 SDNSKFASCGG--DKAVQVWDVNTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSFD------SSVRLWDCRSRSFEPI 138 (307)
T ss_pred ccccccccCCC--CceEEEEEcccCeeeee--cccccceeeEEEecCcceEEEecccc------ceeEEEEcccCCCCcc
Confidence 34544555542 45788999998764221 11111122333343 3555556543 5588999999998888
Q ss_pred CCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCC
Q 016421 219 PSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTN 298 (390)
Q Consensus 219 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~ 298 (390)
.-+...+..-..+.+.+...+.|..++ .+-.||+..++-.. ..+..+. ......-++.-.++|..-.
T Consensus 139 Qildea~D~V~Si~v~~heIvaGS~DG------tvRtydiR~G~l~s-Dy~g~pi------t~vs~s~d~nc~La~~l~s 205 (307)
T KOG0316|consen 139 QILDEAKDGVSSIDVAEHEIVAGSVDG------TVRTYDIRKGTLSS-DYFGHPI------TSVSFSKDGNCSLASSLDS 205 (307)
T ss_pred chhhhhcCceeEEEecccEEEeeccCC------cEEEEEeecceeeh-hhcCCcc------eeEEecCCCCEEEEeeccc
Confidence 888888888888888888888776654 35569988766431 1111110 0012223444444444444
Q ss_pred eEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 299 MVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 299 ~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+...|.++++--....--.... +-.-++..+..-.|++|.++- .|+.||..+
T Consensus 206 tlrLlDk~tGklL~sYkGhkn~e----ykldc~l~qsdthV~sgSEDG-----~Vy~wdLvd 258 (307)
T KOG0316|consen 206 TLRLLDKETGKLLKSYKGHKNME----YKLDCCLNQSDTHVFSGSEDG-----KVYFWDLVD 258 (307)
T ss_pred eeeecccchhHHHHHhcccccce----eeeeeeecccceeEEeccCCc-----eEEEEEecc
Confidence 55566666654222110000011 112333444555666664421 488888876
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=91.23 E-value=12 Score=34.61 Aligned_cols=185 Identities=14% Similarity=0.110 Sum_probs=90.3
Q ss_pred eEEEEECCCCcEeecCCCCCC--CcceeeeeeCCEEEEEeccCCCCCccceEEEE--ECCCCcEEEcCCCCCCCcCceEE
Q 016421 156 AIWKYSLVFRSWMKCEGMNHP--RCLFGSGSLGSIAIIAGGSDKNGHVLKSAELY--DSTTGRWEMLPSMHSPRRLCSGF 231 (390)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~~~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~y--d~~t~~W~~~~~~~~~r~~~~~~ 231 (390)
.++.||..++++..+...... ........-+..||+...... ....+..| +..+++.+.+...+........+
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~---~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSG---DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSS---TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEcccc---CCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 345677789988766542111 111122224678999865431 12334445 44557888776655332233333
Q ss_pred EE--CC-EEEEEecccCCCccCceEEEEeCCCC-ceEEccC-------CCCCCCCcCCCCCEEEEE--CCEEEEEecCCC
Q 016421 232 FM--DG-KFYVIGGMSSPTVSLTCGEEFDLETR-KWRKIEG-------MYPNVNRAAQAPPLVAVV--DNQLYAVEYLTN 298 (390)
Q Consensus 232 ~~--~~-~iyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~-------~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~ 298 (390)
.+ ++ .||+. .+. ...+.+|++..+ .-..... -|..........|.+... +..+|+.+-...
T Consensus 93 ~~~~~g~~l~va-ny~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D 166 (345)
T PF10282_consen 93 AVDPDGRFLYVA-NYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD 166 (345)
T ss_dssp EECTTSSEEEEE-ETT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred EEecCCCEEEEE-Ecc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence 33 34 55554 222 335667777764 2222211 011100011122334443 346888887778
Q ss_pred eEEEEeCCCCc--eEEccCC--CccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016421 299 MVKKYDKLKNT--WDVLGRL--PVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 299 ~v~~yd~~~~~--W~~v~~~--~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
.|++|+.+.+. ......+ +.....| +.+.. -+..+|++....+ .|.+|+..
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPR----h~~f~pdg~~~Yv~~e~s~------~v~v~~~~ 222 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPR----HLAFSPDGKYAYVVNELSN------TVSVFDYD 222 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEE----EEEE-TTSSEEEEEETTTT------EEEEEEEE
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCc----EEEEcCCcCEEEEecCCCC------cEEEEeec
Confidence 99999887765 6553322 2221111 22222 2457999987542 45555554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=91.09 E-value=14 Score=35.04 Aligned_cols=138 Identities=13% Similarity=-0.016 Sum_probs=72.9
Q ss_pred ceEEEEECCCCcEEEcCCCCCCCcCceEEEECC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCC
Q 016421 203 KSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPP 281 (390)
Q Consensus 203 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 281 (390)
..++++|..++.-+.+......... ....-+| .|++....++ ...++.+|+.++....+....... ..+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~-~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~~-----~~~ 283 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGA-PAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGID-----TEP 283 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccc-eEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCCC-----CCE
Confidence 5789999998876665443322221 1122355 4655533221 246888999988877765432210 011
Q ss_pred EEEEECC-EEEEEec--CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecC
Q 016421 282 LVAVVDN-QLYAVEY--LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 282 ~~~~~~g-~l~v~gg--~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~ 358 (390)
....+| +|+.... ....++.+|..+.++..+..-.... ... ...-+++.+++..... ....|+.+|+
T Consensus 284 -~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~-----~~~-~~spdg~~i~~~~~~~---~~~~i~~~d~ 353 (417)
T TIGR02800 284 -SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYN-----ASP-SWSPDGDLIAFVHREG---GGFNIAVMDL 353 (417)
T ss_pred -EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc-----cCe-EECCCCCEEEEEEccC---CceEEEEEeC
Confidence 112244 4444432 2347999999888887765321111 111 2223455555544332 2235888888
Q ss_pred CC
Q 016421 359 KS 360 (390)
Q Consensus 359 ~~ 360 (390)
.+
T Consensus 354 ~~ 355 (417)
T TIGR02800 354 DG 355 (417)
T ss_pred CC
Confidence 76
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=90.81 E-value=16 Score=35.12 Aligned_cols=139 Identities=12% Similarity=0.081 Sum_probs=73.8
Q ss_pred cceEEEEECCCCcEEEcCCCCCCCcCceEEEECC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCC
Q 016421 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAP 280 (390)
Q Consensus 202 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 280 (390)
...++++|..+++-+.+...+.... .....-+| +|++....++ ...++.+|+.++.-.++...... ...
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~~~-----~~~ 296 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHFGI-----DTE 296 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCCCC-----ccc
Confidence 3568999999988877765442211 11222345 5655433322 24689999998887666433211 011
Q ss_pred CEEEEECCE-EEEEecC--CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeec
Q 016421 281 PLVAVVDNQ-LYAVEYL--TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWC 357 (390)
Q Consensus 281 ~~~~~~~g~-l~v~gg~--~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~ 357 (390)
....-+|+ |+..... ...++.+|..+++.+.+..-. ... ...+....++.|++..+.. ....|++||
T Consensus 297 -~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g--~~~---~~~~~SpDG~~Ia~~~~~~----~~~~I~v~d 366 (433)
T PRK04922 297 -PTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG--NYN---ARASVSPDGKKIAMVHGSG----GQYRIAVMD 366 (433)
T ss_pred -eEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC--CCc---cCEEECCCCCEEEEEECCC----CceeEEEEE
Confidence 12233454 4444322 246888898888887765211 110 1122222345566655422 122688888
Q ss_pred CCC
Q 016421 358 PKS 360 (390)
Q Consensus 358 ~~~ 360 (390)
+.+
T Consensus 367 ~~~ 369 (433)
T PRK04922 367 LST 369 (433)
T ss_pred CCC
Confidence 876
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.67 E-value=10 Score=32.74 Aligned_cols=150 Identities=19% Similarity=0.223 Sum_probs=79.7
Q ss_pred cEEEcCCCCC-----CCcCceEE-EECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEEC
Q 016421 214 RWEMLPSMHS-----PRRLCSGF-FMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVD 287 (390)
Q Consensus 214 ~W~~~~~~~~-----~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 287 (390)
.|+..+||.. |-.+.-.. ...|.|+..||. ..++..|.++++.+..-.- +..+.++++.-+
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~rG------HtDYvH~vv~R~ 166 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREYRG------HTDYVHSVVGRN 166 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEEcC------Ccceeeeeeecc
Confidence 4777766644 22221111 246788888864 2477889999988754321 123444444422
Q ss_pred -CEEEEEecCCCeEEEEeCCCCceEEc-cCCCccccCCCccee--EEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCC
Q 016421 288 -NQLYAVEYLTNMVKKYDKLKNTWDVL-GRLPVRADLSNGWGL--AFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVN 363 (390)
Q Consensus 288 -g~l~v~gg~~~~v~~yd~~~~~W~~v-~~~~~~~~~~~~~~~--~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~ 363 (390)
+.-.+-|+.-+.+.+||..+.+-.++ ..-..+...|..+|- .+.+.+....++||-. .+-.|...+
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp-------~lslwhLrs--- 236 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP-------KLSLWHLRS--- 236 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC-------ceeEEeccC---
Confidence 22344466678899999999876553 332222222323332 4445566666677633 233555554
Q ss_pred CCCCceEEecccC---ccCeEEeeeeeec
Q 016421 364 NGTLDWKVLAEKQ---HVGVFVYNCAVLG 389 (390)
Q Consensus 364 ~~~~~W~~~~~~p---~~~~~~~~~~~~~ 389 (390)
.+-+.+=+.| +.-.|...|.++|
T Consensus 237 ---se~t~vfpipa~v~~v~F~~d~vl~~ 262 (325)
T KOG0649|consen 237 ---SESTCVFPIPARVHLVDFVDDCVLIG 262 (325)
T ss_pred ---CCceEEEecccceeEeeeecceEEEe
Confidence 3444443333 4445555555543
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=90.56 E-value=11 Score=33.06 Aligned_cols=181 Identities=13% Similarity=0.096 Sum_probs=98.7
Q ss_pred CCEEEEEcccccCCeEEEEECC-----CCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--
Q 016421 142 GSELLVFGRELFDFAIWKYSLV-----FRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR-- 214 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~-----t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-- 214 (390)
.+++|++.+.... .++.|... .++....-.+|.+..+.+.++++|.+|..-. ..+.+..||+.++.
T Consensus 30 ~~~iy~~~~~~~~-~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~ 102 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVV 102 (250)
T ss_pred CCCEEEECccCCC-EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEE
Confidence 4577777765433 55555332 2333333346666777788889999988743 35779999999886
Q ss_pred -EEEcCCCCCC------CcCc---eEEEECCEEEEEecccCCCccCceEEEEeCCC----CceEEccCCCCCCCCcCCCC
Q 016421 215 -WEMLPSMHSP------RRLC---SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLET----RKWRKIEGMYPNVNRAAQAP 280 (390)
Q Consensus 215 -W~~~~~~~~~------r~~~---~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~----~~W~~~~~~~~~~~~~~~~~ 280 (390)
+..++..... ...+ -.++=++-|+|+-...... ..-.+-..|+.+ .+|..- .+.+ ..
T Consensus 103 ~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~-g~ivvskld~~tL~v~~tw~T~--~~k~------~~ 173 (250)
T PF02191_consen 103 ARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN-GNIVVSKLDPETLSVEQTWNTS--YPKR------SA 173 (250)
T ss_pred EEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC-CcEEEEeeCcccCceEEEEEec--cCch------hh
Confidence 4455433211 1111 2223344566664433211 011233466665 356642 2221 11
Q ss_pred CEEEEECCEEEEEecC----CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe---CCEEEEEcC
Q 016421 281 PLVAVVDNQLYAVEYL----TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC---GNELLVVGG 342 (390)
Q Consensus 281 ~~~~~~~g~l~v~gg~----~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~---~~~lyv~GG 342 (390)
..+..+-|.||++... ..-.+.||..+++=..+ .++...... ..+.+.+ +.+||+..-
T Consensus 174 ~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~-~i~f~~~~~---~~~~l~YNP~dk~LY~wd~ 238 (250)
T PF02191_consen 174 GNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDV-SIPFPNPYG---NISMLSYNPRDKKLYAWDN 238 (250)
T ss_pred cceeeEeeEEEEEEECCCCCcEEEEEEECCCCceece-eeeeccccC---ceEeeeECCCCCeEEEEEC
Confidence 2356677899999753 23457899998865433 333333221 1344444 567887764
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.50 E-value=11 Score=32.73 Aligned_cols=247 Identities=12% Similarity=0.010 Sum_probs=113.3
Q ss_pred eCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeee
Q 016421 104 CDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSG 183 (390)
Q Consensus 104 ~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~ 183 (390)
++-+.+..||..+++-.++.....+. .......+-.+++....||++ ..+-++|....+-.+.-..+.+.. .++
T Consensus 58 a~~qhvRlyD~~S~np~Pv~t~e~h~--kNVtaVgF~~dgrWMyTgseD--gt~kIWdlR~~~~qR~~~~~spVn--~vv 131 (311)
T KOG0315|consen 58 AGNQHVRLYDLNSNNPNPVATFEGHT--KNVTAVGFQCDGRWMYTGSED--GTVKIWDLRSLSCQRNYQHNSPVN--TVV 131 (311)
T ss_pred ccCCeeEEEEccCCCCCceeEEeccC--CceEEEEEeecCeEEEecCCC--ceEEEEeccCcccchhccCCCCcc--eEE
Confidence 45678889999877432222111111 111122334567777777754 455666765533322222222211 111
Q ss_pred eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcC-ceEEE-ECCEEEEEecccCCCccCceEEEEeCCCC
Q 016421 184 SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRL-CSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETR 261 (390)
Q Consensus 184 ~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 261 (390)
..-+.-=+|.|-. .-.++++|+..+..... .+|..-.. .+..+ -+|++.+. ..+. ..++++++.+.
T Consensus 132 lhpnQteLis~dq-----sg~irvWDl~~~~c~~~-liPe~~~~i~sl~v~~dgsml~a-~nnk-----G~cyvW~l~~~ 199 (311)
T KOG0315|consen 132 LHPNQTELISGDQ-----SGNIRVWDLGENSCTHE-LIPEDDTSIQSLTVMPDGSMLAA-ANNK-----GNCYVWRLLNH 199 (311)
T ss_pred ecCCcceEEeecC-----CCcEEEEEccCCccccc-cCCCCCcceeeEEEcCCCcEEEE-ecCC-----ccEEEEEccCC
Confidence 2222222232321 33589999999976543 23433222 22333 35664443 3332 23566666654
Q ss_pred ce-EEccCCCCCCCCcCCCC-CEEEEECCEEEEEecCCCeEEEEeCCCCceEEcc-CCCccccCCCcceeEEEEeCCEEE
Q 016421 262 KW-RKIEGMYPNVNRAAQAP-PLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLG-RLPVRADLSNGWGLAFKACGNELL 338 (390)
Q Consensus 262 ~W-~~~~~~~~~~~~~~~~~-~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~-~~~~~~~~~~~~~~~~~~~~~~ly 338 (390)
+- +++.+.-.-.. +.++. .+...-+++.++..+.-..+.+|+.++- -+.. .+... .+-.|.++ ...++.-+
T Consensus 200 ~~~s~l~P~~k~~a-h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh--~rWvWdc~-FS~dg~Yl 273 (311)
T KOG0315|consen 200 QTASELEPVHKFQA-HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGH--QRWVWDCA-FSADGEYL 273 (311)
T ss_pred CccccceEhhheec-ccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecC--CceEEeee-eccCccEE
Confidence 32 22222211110 01111 1223346676666667788899987776 2221 11111 11224332 23455555
Q ss_pred EEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccCccCeEEeeeeee
Q 016421 339 VVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVL 388 (390)
Q Consensus 339 v~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~ 388 (390)
+.|+.+. .+..||++.+ +++..-++......||++.
T Consensus 274 vTassd~------~~rlW~~~~~--------k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 274 VTASSDH------TARLWDLSAG--------KEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EecCCCC------ceeecccccC--------ceeeecCCcccccEEEEee
Confidence 5555331 4668998873 2333333444555555554
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=90.23 E-value=3.8 Score=37.55 Aligned_cols=133 Identities=13% Similarity=0.041 Sum_probs=75.3
Q ss_pred CeEEEEECCCC-----cEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc-EEEcCCCCCCCcCc
Q 016421 155 FAIWKYSLVFR-----SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR-WEMLPSMHSPRRLC 228 (390)
Q Consensus 155 ~~~~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~r~~~ 228 (390)
..+++|+.... +.+.+.....+-.-.+++.+++++.+..| +.+.+|+..... +...+.+..+-...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~~~~i~ 133 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDSPFYIT 133 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-BSSSEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecceEEEE
Confidence 56888888874 55555443333344567777888766655 457888888877 87776665555555
Q ss_pred eEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEecCCCeEE--EEeC
Q 016421 229 SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEYLTNMVK--KYDK 305 (390)
Q Consensus 229 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg~~~~v~--~yd~ 305 (390)
+...+++.|++- -.. ..-.+..|+....+-..++.-..+ +...++..+ ++..++++-..+.+. .|++
T Consensus 134 sl~~~~~~I~vg-D~~----~sv~~~~~~~~~~~l~~va~d~~~-----~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 134 SLSVFKNYILVG-DAM----KSVSLLRYDEENNKLILVARDYQP-----RWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEETTEEEEE-ESS----SSEEEEEEETTTE-EEEEEEESS------BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEeccccEEEEE-Ecc----cCEEEEEEEccCCEEEEEEecCCC-----ccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 566778876653 221 123455678877667776643332 122234455 654444443444444 4554
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=89.94 E-value=19 Score=34.53 Aligned_cols=138 Identities=16% Similarity=0.088 Sum_probs=73.7
Q ss_pred ceEEEEECCCCcEEEcCCCCCCCcCceEEEECC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCC
Q 016421 203 KSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPP 281 (390)
Q Consensus 203 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 281 (390)
..++++|+.+++-+.+...+..-. .....-+| +|++....++ ...++.+|+.+...+.+....... ..+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~~-----~~~ 292 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHPAID-----TEP 292 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCCCCc-----CCe
Confidence 579999999998877754432111 11112244 4554432221 257899999999888775432210 111
Q ss_pred EEEEECC-EEEEEec--CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecC
Q 016421 282 LVAVVDN-QLYAVEY--LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 282 ~~~~~~g-~l~v~gg--~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~ 358 (390)
...-+| +|+.... ....++.+|..++++..+..... . .........++.|+......+ ...++.+|+
T Consensus 293 -~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~-~----~~~~~~Spdg~~i~~~~~~~~----~~~l~~~dl 362 (430)
T PRK00178 293 -FWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGN-Y----NARPRLSADGKTLVMVHRQDG----NFHVAAQDL 362 (430)
T ss_pred -EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC-C----ccceEECCCCCEEEEEEccCC----ceEEEEEEC
Confidence 222344 4555432 23478899999988887642111 0 011122223455655543221 225888888
Q ss_pred CC
Q 016421 359 KS 360 (390)
Q Consensus 359 ~~ 360 (390)
.+
T Consensus 363 ~t 364 (430)
T PRK00178 363 QR 364 (430)
T ss_pred CC
Confidence 76
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=89.69 E-value=17 Score=33.76 Aligned_cols=63 Identities=8% Similarity=0.114 Sum_probs=38.9
Q ss_pred CCEEEEEe-c--------CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCC-EEEEEcCCCCCCCCeEEEeee
Q 016421 287 DNQLYAVE-Y--------LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGN-ELLVVGGQRGPEGENVVLNSW 356 (390)
Q Consensus 287 ~g~l~v~g-g--------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~i~~y 356 (390)
++++|+.. + ..+.|+++|..+ ++.+..++..... ++.++..-+. .||+..+..+ +|.++
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t--~kvi~~i~vG~~~---~~iavS~Dgkp~lyvtn~~s~------~VsVi 327 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKT--GKRLRKIELGHEI---DSINVSQDAKPLLYALSTGDK------TLYIF 327 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCC--CeEEEEEeCCCce---eeEEECCCCCeEEEEeCCCCC------cEEEE
Confidence 57899842 2 236899999655 4555555444321 3344434455 7888877543 58899
Q ss_pred cCCC
Q 016421 357 CPKS 360 (390)
Q Consensus 357 ~~~~ 360 (390)
|..+
T Consensus 328 D~~t 331 (352)
T TIGR02658 328 DAET 331 (352)
T ss_pred ECcC
Confidence 9877
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=89.62 E-value=21 Score=34.58 Aligned_cols=138 Identities=12% Similarity=0.003 Sum_probs=73.6
Q ss_pred ceEEEEECCCCcEEEcCCCCCCCcCceEEEECC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCC
Q 016421 203 KSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPP 281 (390)
Q Consensus 203 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 281 (390)
..++++|+.+++-+.+...+..... ....-+| +|++....++ ...++.+|+.+++.+++....... ..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~-~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~~~-----~~- 310 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGA-PRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRAID-----TE- 310 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCC-eeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCCCc-----cc-
Confidence 5799999998887766544322111 1122244 4655543322 346889999999888775432110 11
Q ss_pred EEEEECCE-EEEEec--CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecC
Q 016421 282 LVAVVDNQ-LYAVEY--LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 282 ~~~~~~g~-l~v~gg--~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~ 358 (390)
....-+|+ |++... ....++.+|.+++++..+..-. ... .+.+...-++.|+..+... ....|+.+|+
T Consensus 311 p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g--~~~---~~~~~SpDG~~l~~~~~~~----g~~~I~~~dl 381 (448)
T PRK04792 311 PSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG--EQN---LGGSITPDGRSMIMVNRTN----GKFNIARQDL 381 (448)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC--CCC---cCeeECCCCCEEEEEEecC----CceEEEEEEC
Confidence 12223444 444432 2357899999999988874211 110 1122222344555544322 1235788888
Q ss_pred CC
Q 016421 359 KS 360 (390)
Q Consensus 359 ~~ 360 (390)
++
T Consensus 382 ~~ 383 (448)
T PRK04792 382 ET 383 (448)
T ss_pred CC
Confidence 76
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=89.56 E-value=16 Score=37.89 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=21.4
Q ss_pred eEEEECCEEEEEecccCCCccCceEEEEeCCCC--ceEEcc
Q 016421 229 SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR--KWRKIE 267 (390)
Q Consensus 229 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~ 267 (390)
+-++++|.||+... ...++.+|..|+ .|+.-.
T Consensus 189 TPlvvgg~lYv~t~-------~~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 189 TPLKVGDTLYLCTP-------HNKVIALDAATGKEKWKFDP 222 (764)
T ss_pred CCEEECCEEEEECC-------CCeEEEEECCCCcEEEEEcC
Confidence 34578999999743 245777887765 477543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.87 E-value=20 Score=33.45 Aligned_cols=135 Identities=12% Similarity=0.122 Sum_probs=69.7
Q ss_pred eEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCC---cEEEcCCCCCCCcCceEE
Q 016421 156 AIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTG---RWEMLPSMHSPRRLCSGF 231 (390)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~---~W~~~~~~~~~r~~~~~~ 231 (390)
.+..+|..|+.-...-+-....+..+++-+ ++.-+|.|+.+ ..+...|...+ .|+-+.. ++-.--++
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d------r~i~~wdlDgn~~~~W~gvr~---~~v~dlai 362 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD------RTIIMWDLDGNILGNWEGVRD---PKVHDLAI 362 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC------CcEEEecCCcchhhccccccc---ceeEEEEE
Confidence 367777777655443221111222223322 67778888755 33566666544 5866533 33333333
Q ss_pred EECCE-EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCce
Q 016421 232 FMDGK-FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTW 310 (390)
Q Consensus 232 ~~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W 310 (390)
..+|+ ++.++ .+ ..+..|+.++..=..+-....+ .......-+|++.++.-..+.+..||.+ .|
T Consensus 363 t~Dgk~vl~v~-~d------~~i~l~~~e~~~dr~lise~~~------its~~iS~d~k~~LvnL~~qei~LWDl~--e~ 427 (519)
T KOG0293|consen 363 TYDGKYVLLVT-VD------KKIRLYNREARVDRGLISEEQP------ITSFSISKDGKLALVNLQDQEIHLWDLE--EN 427 (519)
T ss_pred cCCCcEEEEEe-cc------cceeeechhhhhhhccccccCc------eeEEEEcCCCcEEEEEcccCeeEEeecc--hh
Confidence 45664 44443 22 2344566655432211111110 0012334578888888888899999998 55
Q ss_pred EEcc
Q 016421 311 DVLG 314 (390)
Q Consensus 311 ~~v~ 314 (390)
..+.
T Consensus 428 ~lv~ 431 (519)
T KOG0293|consen 428 KLVR 431 (519)
T ss_pred hHHH
Confidence 5554
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=88.68 E-value=37 Score=36.83 Aligned_cols=154 Identities=16% Similarity=0.155 Sum_probs=83.7
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCC----------C---CCCcceeeeee--CCEEEEEeccCCCCCccceEE
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGM----------N---HPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAE 206 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~----------~---~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~ 206 (390)
++.+|+... ..+.+++||+.++.......- . ......+++.- ++.||+.... .+.+.
T Consensus 694 ~g~LyVad~--~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Ir 765 (1057)
T PLN02919 694 NEKVYIAMA--GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIR 765 (1057)
T ss_pred CCeEEEEEC--CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------CCeEE
Confidence 456776542 235688888877655432110 0 00111123322 3468988543 35689
Q ss_pred EEECCCCcEEEcC--C--CCC--------------C-CcC-ceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCceEE
Q 016421 207 LYDSTTGRWEMLP--S--MHS--------------P-RRL-CSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRK 265 (390)
Q Consensus 207 ~yd~~t~~W~~~~--~--~~~--------------~-r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 265 (390)
+||+.++.-..+. . .+. . ... .+.+. -+|.|||.-.. .+.|.+||+.++....
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------NHKIKKLDPATKRVTT 839 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC------CCEEEEEECCCCeEEE
Confidence 9998876533211 0 000 0 011 12222 36789998432 3568889999888776
Q ss_pred ccCCCCC-----CC-CcCC-CCCEEEE-ECCEEEEEecCCCeEEEEeCCCCc
Q 016421 266 IEGMYPN-----VN-RAAQ-APPLVAV-VDNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 266 ~~~~~~~-----~~-~~~~-~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
+...... .. .+.. ....+++ -+|++||.+...+.|.++|..+++
T Consensus 840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 6532210 00 0000 1122333 468999999888999999998875
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.64 E-value=15 Score=31.79 Aligned_cols=55 Identities=20% Similarity=0.509 Sum_probs=30.4
Q ss_pred eCCCCceEE--ccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016421 304 DKLKNTWDV--LGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 304 d~~~~~W~~--v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
+.+.++|+. +..+|... |...- .+-|.++.++|-+. .+.+|-.+.+ -+|..++..
T Consensus 241 ~~e~e~wk~tll~~f~~~~-----w~vSW-S~sGn~LaVs~GdN------kvtlwke~~~-----Gkw~~v~~~ 297 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVV-----WRVSW-SLSGNILAVSGGDN------KVTLWKENVD-----GKWEEVGEV 297 (299)
T ss_pred cCccCcccccccccCCcce-----EEEEE-eccccEEEEecCCc------EEEEEEeCCC-----CcEEEcccc
Confidence 556678876 34444432 22222 23455555554231 5778877662 379998754
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=88.46 E-value=22 Score=33.33 Aligned_cols=203 Identities=15% Similarity=0.065 Sum_probs=106.4
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCc--EeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCC--c
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTG--R 214 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~ 214 (390)
+..++.+|+.. ....++-+|+.+.+ |+.....-..........-+++||+- ..++ .+++||..++ .
T Consensus 65 ~~~dg~v~~~~---~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g-~~~g------~~y~ld~~~G~~~ 134 (370)
T COG1520 65 ADGDGTVYVGT---RDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVG-SWDG------KLYALDASTGTLV 134 (370)
T ss_pred EeeCCeEEEec---CCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEe-cccc------eEEEEECCCCcEE
Confidence 45678888862 22378899999887 86543310111111222226787664 3222 5889999766 4
Q ss_pred EEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCC--ceEEccCC--CCCCCCcCCCCCEEEEECCEE
Q 016421 215 WEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR--KWRKIEGM--YPNVNRAAQAPPLVAVVDNQL 290 (390)
Q Consensus 215 W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~--~~~~~~~~~~~~~~~~~~g~l 290 (390)
|+.-.... .+.....+..++.+|+.. ....++++|..+. .|..-... .... .. ..+..++.+
T Consensus 135 W~~~~~~~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~~~~~~-----~~-~~~~~~~~v 200 (370)
T COG1520 135 WSRNVGGS-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAPLSLSI-----YG-SPAIASGTV 200 (370)
T ss_pred EEEecCCC-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCcccccc-----cc-CceeecceE
Confidence 87643332 333333445677777753 1234667777754 58743322 2211 11 122566777
Q ss_pred EEEecC-CCeEEEEeCCCC--ceEEccCCCccccCCCcceeEEEEeCCEEEEEcCC-CCCCCCeEEEeeecCCCCCCCCC
Q 016421 291 YAVEYL-TNMVKKYDKLKN--TWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQ-RGPEGENVVLNSWCPKSGVNNGT 366 (390)
Q Consensus 291 ~v~gg~-~~~v~~yd~~~~--~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~-~~~~~~~~~i~~y~~~~~~~~~~ 366 (390)
|+.... ...++.+|++++ .|+.-...+....... ......++.||+-++. ... ....++++|..+ ++
T Consensus 201 y~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~---~~~~~~~~~v~v~~~~~~~~--~~g~~~~l~~~~----G~ 271 (370)
T COG1520 201 YVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAIS---TTPAVDGGPVYVDGGVYAGS--YGGKLLCLDADT----GE 271 (370)
T ss_pred EEecCCCcceEEEEEccCCcEeeeeeeecccCccccc---ccccccCceEEECCcEEEEe--cCCeEEEEEcCC----Cc
Confidence 776432 346899999877 4885322222211100 0012334555555542 111 111377888877 55
Q ss_pred CceEEecc
Q 016421 367 LDWKVLAE 374 (390)
Q Consensus 367 ~~W~~~~~ 374 (390)
..|+.-..
T Consensus 272 ~~W~~~~~ 279 (370)
T COG1520 272 LIWSFPAG 279 (370)
T ss_pred eEEEEecc
Confidence 67876554
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=87.76 E-value=27 Score=33.58 Aligned_cols=147 Identities=9% Similarity=-0.151 Sum_probs=74.6
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 233 (390)
...+++.|.....-+.+..-...-.......-+.+|+......+ ...++++|+.++..+.+...+...... ...-
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g----~~~i~~~dl~~g~~~~l~~~~g~~~~~-~~SP 255 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANG----RPRVYLLDLETGQRELVGNFPGMTFAP-RFSP 255 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCC----CCEEEEEECCCCcEEEeecCCCcccCc-EECC
Confidence 45788888755433333321111111111111334444332111 257999999999888776544322111 1223
Q ss_pred CC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCE-EEEEec--CCCeEEEEeCCCCc
Q 016421 234 DG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQ-LYAVEY--LTNMVKKYDKLKNT 309 (390)
Q Consensus 234 ~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~-l~v~gg--~~~~v~~yd~~~~~ 309 (390)
+| +|++....++ ...++.+|+.+..-.++...+... .. ....-+|+ |+.... ....++.+|..+.+
T Consensus 256 DG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~~~~~-----~~-~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 256 DGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDSPAID-----TS-PSYSPDGSQIVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred CCCEEEEEEecCC----CceEEEEECCCCceEEccCCCCcc-----Cc-eeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence 55 4544433222 356888999988877765433210 11 12233444 443321 23478899988877
Q ss_pred eEEccC
Q 016421 310 WDVLGR 315 (390)
Q Consensus 310 W~~v~~ 315 (390)
.+.+..
T Consensus 326 ~~~lt~ 331 (435)
T PRK05137 326 PRRISF 331 (435)
T ss_pred eEEeec
Confidence 777653
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.08 E-value=34 Score=34.02 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=53.6
Q ss_pred EEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCC-EEEEEcCCCCCCCCeEEEeeecCCCC
Q 016421 283 VAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGN-ELLVVGGQRGPEGENVVLNSWCPKSG 361 (390)
Q Consensus 283 ~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~i~~y~~~~~ 361 (390)
+.++.....+-|-+.+.|..||.+..+=.+ ........ -.++++.++ .-++++|.++ .|..|...+
T Consensus 210 v~~Lrd~tI~sgDS~G~V~FWd~~~gTLiq--S~~~h~ad----Vl~Lav~~~~d~vfsaGvd~------~ii~~~~~~- 276 (691)
T KOG2048|consen 210 VLFLRDSTIASGDSAGTVTFWDSIFGTLIQ--SHSCHDAD----VLALAVADNEDRVFSAGVDP------KIIQYSLTT- 276 (691)
T ss_pred EEEeecCcEEEecCCceEEEEcccCcchhh--hhhhhhcc----eeEEEEcCCCCeEEEccCCC------ceEEEEecC-
Confidence 445555666667788999999998876322 11111110 133434333 4555566654 366676666
Q ss_pred CCCCCCceEEecccCccCeEEeeeeeecC
Q 016421 362 VNNGTLDWKVLAEKQHVGVFVYNCAVLGC 390 (390)
Q Consensus 362 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~ 390 (390)
...+|....+.-...+-+.+.+|++|
T Consensus 277 ---~~~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 277 ---NKSEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred ---CccceeeeccccCCcccceeeeeecc
Confidence 22459988876666666677777654
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=86.92 E-value=27 Score=32.70 Aligned_cols=241 Identities=12% Similarity=0.042 Sum_probs=121.8
Q ss_pred cccEEEEEeCCCeeEEEecCCCc--eeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCC--cEeecC
Q 016421 96 VEHWVYLVCDPRGWEAFDPMKKK--WMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFR--SWMKCE 171 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~~--W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~--~W~~~~ 171 (390)
.+..+|+......+.++|+.+.+ |...... . ......-.+..+++||+-.... .+++||..++ .|+.-.
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~---~~~~~~~~~~~~G~i~~g~~~g---~~y~ld~~~G~~~W~~~~ 139 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLG-A---VAQLSGPILGSDGKIYVGSWDG---KLYALDASTGTLVWSRNV 139 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcC-c---ceeccCceEEeCCeEEEecccc---eEEEEECCCCcEEEEEec
Confidence 36777776445578999999775 8543321 0 0000111233367777655432 7899999655 476543
Q ss_pred CCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCC-CCCCcCceEEEECCEEEEEecccCCCc
Q 016421 172 GMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSM-HSPRRLCSGFFMDGKFYVIGGMSSPTV 248 (390)
Q Consensus 172 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~-~~~r~~~~~~~~~~~iyv~GG~~~~~~ 248 (390)
... ++..-..+..++.+|+.- ....+..+|..+++ |+.-.+. ...+...+.+..++.+|+-... .
T Consensus 140 ~~~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~----~ 207 (370)
T COG1520 140 GGS-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG----Y 207 (370)
T ss_pred CCC-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC----C
Confidence 331 222223344466666652 13457888888664 8753322 2222223333567788875321 1
Q ss_pred cCceEEEEeCCCC--ceEEccCCCCCCC---CcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCC--ceEEccCCCcccc
Q 016421 249 SLTCGEEFDLETR--KWRKIEGMYPNVN---RAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKN--TWDVLGRLPVRAD 321 (390)
Q Consensus 249 ~~~~v~~yd~~~~--~W~~~~~~~~~~~---~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~--~W~~v~~~~~~~~ 321 (390)
...++.+|+.++ .|..-...+.... ..+......+..++.+|.. ...+.+.++|..+. .|+.-..+.....
T Consensus 208 -~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~-~~~g~~~~l~~~~G~~~W~~~~~~~~~~~ 285 (370)
T COG1520 208 -DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAG-SYGGKLLCLDADTGELIWSFPAGGSVQGS 285 (370)
T ss_pred -cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEE-ecCCeEEEEEcCCCceEEEEecccEeccC
Confidence 225788999766 4774322221110 0011222344455555333 33456888887766 4887543221111
Q ss_pred CCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 322 LSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 322 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
. .+......-+|++|+........ ....+++++...
T Consensus 286 ~--~~~~~~~~~dG~v~~~~~~~~~~-~~~~~~~~~~~~ 321 (370)
T COG1520 286 G--LYTTPVAGADGKVYIGFTDNDGR-GSGSLYALADVP 321 (370)
T ss_pred C--eeEEeecCCCccEEEEEeccccc-cccceEEEeccC
Confidence 1 11122222377888776433211 223466777633
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.77 E-value=38 Score=34.30 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=75.2
Q ss_pred CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEc
Q 016421 187 SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKI 266 (390)
Q Consensus 187 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 266 (390)
|.=..+|+.. +-.+.+|+-++.+...-..-...+.......-||.+.+.|+.++. |-+||..+......
T Consensus 319 GDWiA~g~~k-----lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK------VKvWn~~SgfC~vT 387 (893)
T KOG0291|consen 319 GDWIAFGCSK-----LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK------VKVWNTQSGFCFVT 387 (893)
T ss_pred CCEEEEcCCc-----cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCc------EEEEeccCceEEEE
Confidence 5555565532 345777876666654443333344332222348888888876642 45577766543221
Q ss_pred cCCCCCCCCcCCCCCEE-EEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeC--CEEEEEcCC
Q 016421 267 EGMYPNVNRAAQAPPLV-AVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACG--NELLVVGGQ 343 (390)
Q Consensus 267 ~~~~~~~~~~~~~~~~~-~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~--~~lyv~GG~ 343 (390)
-.-+.. ...++ ....|+..+-...-+.|-.||...-.=-+--..|.+.. .++++.+ |.|++.|+.
T Consensus 388 FteHts------~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Q------fscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 388 FTEHTS------GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQ------FSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred eccCCC------ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCcee------eeEEEEcCCCCEEEeecc
Confidence 111110 01111 12344544444444678888877644222112233322 3455566 888888886
Q ss_pred CCCCCCeEEEeeecCCC
Q 016421 344 RGPEGENVVLNSWCPKS 360 (390)
Q Consensus 344 ~~~~~~~~~i~~y~~~~ 360 (390)
+ +-+|++|+.++
T Consensus 456 d-----~F~IfvWS~qT 467 (893)
T KOG0291|consen 456 D-----SFEIFVWSVQT 467 (893)
T ss_pred c-----eEEEEEEEeec
Confidence 5 23577777766
|
|
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
Probab=86.57 E-value=20 Score=33.54 Aligned_cols=110 Identities=13% Similarity=0.077 Sum_probs=60.7
Q ss_pred CCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCc-ccc-CCCcceeEEEEeCCEE
Q 016421 260 TRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPV-RAD-LSNGWGLAFKACGNEL 337 (390)
Q Consensus 260 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~-~~~-~~~~~~~~~~~~~~~l 337 (390)
.+.|+.+..+.. ..-.++.++|++|+++. .+.++.+|.+- +=.+++.... ... ...+....+|...|.|
T Consensus 189 ~~~Wt~l~~~~~-------~~~DIi~~kGkfYAvD~-~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdL 259 (373)
T PLN03215 189 GNVLKALKQMGY-------HFSDIIVHKGQTYALDS-IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGEL 259 (373)
T ss_pred CCeeeEccCCCc-------eeeEEEEECCEEEEEcC-CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEE
Confidence 489999975322 23358999999999964 46788887432 1122221110 000 0000113477888999
Q ss_pred EEEcCCCCCC-----------CCeEEEeeecCCCCCCCCCCceEEecccCccCeEE
Q 016421 338 LVVGGQRGPE-----------GENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFV 382 (390)
Q Consensus 338 yv~GG~~~~~-----------~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~ 382 (390)
+++....... .....+.+|..+. ...+|.++..+....-|.
T Consensus 260 LmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~----~~~~WveV~sLgd~aLFl 311 (373)
T PLN03215 260 YIVERLPKESTWKRKADGFEYSRTVGFKVYKFDD----ELAKWMEVKTLGDNAFVM 311 (373)
T ss_pred EEEEEEccCcccccccccccccceeEEEEEEEcC----CCCcEEEecccCCeEEEE
Confidence 9998743211 1123344553332 226899999986444333
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=86.54 E-value=25 Score=31.93 Aligned_cols=236 Identities=16% Similarity=0.185 Sum_probs=95.4
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCC-CCCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEG-MNHP 176 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~-~~~~ 176 (390)
..-|++|....++.=+---.+|.....-.......+. ..+...++..|+.|.. ..++.-.-.-.+|.+++. .+.+
T Consensus 28 ~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l-~~I~f~~~~g~ivG~~---g~ll~T~DgG~tW~~v~l~~~lp 103 (302)
T PF14870_consen 28 NHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHL-NSISFDGNEGWIVGEP---GLLLHTTDGGKTWERVPLSSKLP 103 (302)
T ss_dssp S-EEEEETTTEEEEESSTTSS-EE-----S-----EE-EEEEEETTEEEEEEET---TEEEEESSTTSS-EE----TT-S
T ss_pred CEEEEEecCCEEEEECCCCccccccccCCCccceeeE-EEEEecCCceEEEcCC---ceEEEecCCCCCcEEeecCCCCC
Confidence 3445555444333333334578876532221111111 1233356778887642 233444444568998753 2333
Q ss_pred Ccceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE-ECCEEEEEecccCCCccCceEE
Q 016421 177 RCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGE 254 (390)
Q Consensus 177 r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~ 254 (390)
-..+.+..+ ++.+++++.. ..++.=.-.-.+|+.+..-...- -..+.. -+|++++++... +.+.
T Consensus 104 gs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~~~gs-~~~~~r~~dG~~vavs~~G------~~~~ 169 (302)
T PF14870_consen 104 GSPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSETSGS-INDITRSSDGRYVAVSSRG------NFYS 169 (302)
T ss_dssp S-EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETTS------SEEE
T ss_pred CCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccCCcce-eEeEEECCCCcEEEEECcc------cEEE
Confidence 333444443 5566666532 12333333445898864322221 112222 366766665322 1223
Q ss_pred EEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEe--CCCCceEEccCCCccccCCCccee-EEE
Q 016421 255 EFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYD--KLKNTWDVLGRLPVRADLSNGWGL-AFK 331 (390)
Q Consensus 255 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd--~~~~~W~~v~~~~~~~~~~~~~~~-~~~ 331 (390)
..|+....|......... |-......-++.|+++. .-+.+..=| -...+|.+-. .|.... +++. .++
T Consensus 170 s~~~G~~~w~~~~r~~~~-----riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~-~~~~~~---~~~~ld~a 239 (302)
T PF14870_consen 170 SWDPGQTTWQPHNRNSSR-----RIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPI-IPIKTN---GYGILDLA 239 (302)
T ss_dssp EE-TT-SS-EEEE--SSS------EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B--TTSS-----S-EEEEE
T ss_pred EecCCCccceEEccCccc-----eehhceecCCCCEEEEe-CCcEEEEccCCCCcccccccc-CCcccC---ceeeEEEE
Confidence 478888889877654331 11112233467888875 334455545 3445788822 122111 2332 222
Q ss_pred Ee-CCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecc
Q 016421 332 AC-GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAE 374 (390)
Q Consensus 332 ~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~ 374 (390)
.. ++.+++.||.. ...+..+.+ .+|++...
T Consensus 240 ~~~~~~~wa~gg~G--------~l~~S~DgG-----ktW~~~~~ 270 (302)
T PF14870_consen 240 YRPPNEIWAVGGSG--------TLLVSTDGG-----KTWQKDRV 270 (302)
T ss_dssp ESSSS-EEEEESTT---------EEEESSTT-----SS-EE-GG
T ss_pred ecCCCCEEEEeCCc--------cEEEeCCCC-----ccceECcc
Confidence 22 57899999854 224445443 68998864
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=86.18 E-value=11 Score=34.56 Aligned_cols=69 Identities=23% Similarity=0.217 Sum_probs=40.2
Q ss_pred CCEEEEEecc---cCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECC---EEEEEecCCCeEEEEeCCC
Q 016421 234 DGKFYVIGGM---SSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDN---QLYAVEYLTNMVKKYDKLK 307 (390)
Q Consensus 234 ~~~iyv~GG~---~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g---~l~v~gg~~~~v~~yd~~~ 307 (390)
.++|||+--. .........||+||+++.+=-..-++..+. ..+.+.++ .||.+....+.+.+||..+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~-------~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPI-------DSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEE-------SEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCcc-------ceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 6799988521 123345678999999998633221221110 02444433 4777766668899999998
Q ss_pred Cc
Q 016421 308 NT 309 (390)
Q Consensus 308 ~~ 309 (390)
++
T Consensus 322 Gk 323 (342)
T PF06433_consen 322 GK 323 (342)
T ss_dssp --
T ss_pred Cc
Confidence 75
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.16 E-value=22 Score=30.95 Aligned_cols=194 Identities=11% Similarity=0.040 Sum_probs=95.0
Q ss_pred EeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016421 140 AVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 140 ~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
+.+++.+..+|. ..+..||..++.=..+...-.++....++.+ +++-...||.++. +.++|...-.-..
T Consensus 49 Tpdk~~LAaa~~---qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt------~kIWdlR~~~~qR 119 (311)
T KOG0315|consen 49 TPDKKDLAAAGN---QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT------VKIWDLRSLSCQR 119 (311)
T ss_pred cCCcchhhhccC---CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce------EEEEeccCcccch
Confidence 335555666653 4788999887654332222233333333333 5666666775543 6677776633333
Q ss_pred cCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCC
Q 016421 218 LPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT 297 (390)
Q Consensus 218 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~ 297 (390)
.-..+.+. -..+..-+.--++.|.. ...|.++|+.++...... +|..... -....+.-+|.+.+..-..
T Consensus 120 ~~~~~spV--n~vvlhpnQteLis~dq-----sg~irvWDl~~~~c~~~l-iPe~~~~---i~sl~v~~dgsml~a~nnk 188 (311)
T KOG0315|consen 120 NYQHNSPV--NTVVLHPNQTELISGDQ-----SGNIRVWDLGENSCTHEL-IPEDDTS---IQSLTVMPDGSMLAAANNK 188 (311)
T ss_pred hccCCCCc--ceEEecCCcceEEeecC-----CCcEEEEEccCCcccccc-CCCCCcc---eeeEEEcCCCcEEEEecCC
Confidence 22222221 12233333333333332 335888999999876433 2221110 0112333466666665566
Q ss_pred CeEEEEeCCCCce-EEccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 298 NMVKKYDKLKNTW-DVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 298 ~~v~~yd~~~~~W-~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.+++|+.-+.+- +.+.++.. ...+.+++..+.. -+++.++..+.+. .+++|+.++
T Consensus 189 G~cyvW~l~~~~~~s~l~P~~k-~~ah~~~il~C~lSPd~k~lat~ssdk------tv~iwn~~~ 246 (311)
T KOG0315|consen 189 GNCYVWRLLNHQTASELEPVHK-FQAHNGHILRCLLSPDVKYLATCSSDK------TVKIWNTDD 246 (311)
T ss_pred ccEEEEEccCCCccccceEhhh-eecccceEEEEEECCCCcEEEeecCCc------eEEEEecCC
Confidence 7888888766432 12222111 1122233333322 2566666665442 466777765
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.62 E-value=21 Score=30.26 Aligned_cols=162 Identities=17% Similarity=0.012 Sum_probs=91.3
Q ss_pred EEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCC-cceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEE
Q 016421 138 SLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR-CLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE 216 (390)
Q Consensus 138 ~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~ 216 (390)
....++++|..-|....+.+.++|..+.+=..-..++.++ ..-+.+.+++.+|..-=.. .-.+.||.. +.+
T Consensus 51 L~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~e------gvaf~~d~~--t~~ 122 (262)
T COG3823 51 LEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKE------GVAFKYDAD--TLE 122 (262)
T ss_pred eeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecc------ceeEEEChH--Hhh
Confidence 3455778888777777788999999977632222333233 3447788899999884222 225677754 444
Q ss_pred EcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceE---Ecc--CCCCCCCCcCCCCCEEEEECCEEE
Q 016421 217 MLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR---KIE--GMYPNVNRAAQAPPLVAVVDNQLY 291 (390)
Q Consensus 217 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~---~~~--~~~~~~~~~~~~~~~~~~~~g~l~ 291 (390)
.+...+.+-.+.+.+.-+.++..--| ...+..-||++-.=. .+. ..|.. .-.-+-.++|.+|
T Consensus 123 ~lg~~~y~GeGWgLt~d~~~LimsdG-------satL~frdP~tfa~~~~v~VT~~g~pv~------~LNELE~VdG~ly 189 (262)
T COG3823 123 ELGRFSYEGEGWGLTSDDKNLIMSDG-------SATLQFRDPKTFAELDTVQVTDDGVPVS------KLNELEWVDGELY 189 (262)
T ss_pred hhcccccCCcceeeecCCcceEeeCC-------ceEEEecCHHHhhhcceEEEEECCeecc------cccceeeeccEEE
Confidence 55555555445555544555444322 223344466542211 111 11110 0011344566666
Q ss_pred EEecCCCeEEEEeCCCC---ceEEccCCCccc
Q 016421 292 AVEYLTNMVKKYDKLKN---TWDVLGRLPVRA 320 (390)
Q Consensus 292 v~gg~~~~v~~yd~~~~---~W~~v~~~~~~~ 320 (390)
.---....+.+-||+++ .|..++.++...
T Consensus 190 ANVw~t~~I~rI~p~sGrV~~widlS~L~~~~ 221 (262)
T COG3823 190 ANVWQTTRIARIDPDSGRVVAWIDLSGLLKEL 221 (262)
T ss_pred EeeeeecceEEEcCCCCcEEEEEEccCCchhc
Confidence 54445678889999998 499988776543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=85.57 E-value=38 Score=33.20 Aligned_cols=105 Identities=12% Similarity=0.127 Sum_probs=51.7
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEee-----cCCCCCCCcceeeeee---CCEEEEEeccCCCCCccceEEEEECCCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMK-----CEGMNHPRCLFGSGSL---GSIAIIAGGSDKNGHVLKSAELYDSTTG 213 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~-----~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 213 (390)
++.+++.|+. +..+.+||..+..... +..+.........+.+ ++.+++.||.+ ..+.++|..++
T Consensus 87 d~~~LaSgS~--DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D------gtVrIWDl~tg 158 (493)
T PTZ00421 87 DPQKLFTASE--DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD------MVVNVWDVERG 158 (493)
T ss_pred CCCEEEEEeC--CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC------CEEEEEECCCC
Confidence 3455565653 4577888876543211 1111111111122222 23566666654 34788998877
Q ss_pred cEEEcCCCCCCCcCceEE--EECCEEEEEecccCCCccCceEEEEeCCCCc
Q 016421 214 RWEMLPSMHSPRRLCSGF--FMDGKFYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 214 ~W~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
.-... +.........+ ..++.+.+.|+.++ .+..||+.+++
T Consensus 159 ~~~~~--l~~h~~~V~sla~spdG~lLatgs~Dg------~IrIwD~rsg~ 201 (493)
T PTZ00421 159 KAVEV--IKCHSDQITSLEWNLDGSLLCTTSKDK------KLNIIDPRDGT 201 (493)
T ss_pred eEEEE--EcCCCCceEEEEEECCCCEEEEecCCC------EEEEEECCCCc
Confidence 53221 11111111122 23677777766543 46779998765
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=85.45 E-value=36 Score=32.70 Aligned_cols=140 Identities=13% Similarity=0.009 Sum_probs=68.8
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCC-EEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGS-IAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF 232 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 232 (390)
...++++|..+++-+.+...+..... ....-++ +|++....++ ..+++.+|..++..+.+..-... .......
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~~~~-~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wS 300 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGHNGA-PAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTSGAGN-NTEPSWS 300 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCccCc-eeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeeccCCCC-cCCEEEC
Confidence 34688889888766555443322111 1112244 4444432222 23588889988877766432211 1111122
Q ss_pred ECCE-EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCE-EEEEecCCCeEEEEeCCCCce
Q 016421 233 MDGK-FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQ-LYAVEYLTNMVKKYDKLKNTW 310 (390)
Q Consensus 233 ~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~-l~v~gg~~~~v~~yd~~~~~W 310 (390)
-+|+ |++.....+ ...++.+|..+..-..+.. . . ..+ ...-+|+ |++.++ ..+..+|..++++
T Consensus 301 pDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~-~------~-~~~-~~SpDG~~ia~~~~--~~i~~~Dl~~g~~ 365 (429)
T PRK01742 301 PDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG-R------G-YSA-QISADGKTLVMING--DNVVKQDLTSGST 365 (429)
T ss_pred CCCCEEEEEECCCC----CceEEEEECCCCCeEEecC-C------C-CCc-cCCCCCCEEEEEcC--CCEEEEECCCCCe
Confidence 3554 554433222 2356667766554333211 0 0 111 1223444 444433 5677899999988
Q ss_pred EEcc
Q 016421 311 DVLG 314 (390)
Q Consensus 311 ~~v~ 314 (390)
..+.
T Consensus 366 ~~lt 369 (429)
T PRK01742 366 EVLS 369 (429)
T ss_pred EEec
Confidence 8764
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=84.77 E-value=38 Score=32.41 Aligned_cols=207 Identities=12% Similarity=0.044 Sum_probs=106.1
Q ss_pred CCchhhhhhcCccccEEEEEeCCCeeEEEecCCCceeeCCC-CCCCcccCC---------CCeeEEEeCCEEEEEccccc
Q 016421 84 GYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPK-IPCDECFNH---------ADKESLAVGSELLVFGRELF 153 (390)
Q Consensus 84 ~~~~~~r~~~~~~~~~l~~~~~~~~~~~~d~~~~~W~~l~~-~p~~~~~~~---------~~~~~~~~~~~iy~~Gg~~~ 153 (390)
..|.....++.-++..=.+|....+++.|||.+++-+++.- +|..+.... ..-.+++.++.|-.+.
T Consensus 264 TnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS---- 339 (668)
T COG4946 264 TNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS---- 339 (668)
T ss_pred CCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe----
Confidence 33444334444556666667667889999999998876632 233211110 0001222344443332
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 233 (390)
....+++++..+---+++....-| ..-...+++-.++|-.+++ .+.+||..++.-+.+.. +..+.....+.-
T Consensus 340 RGkaFi~~~~~~~~iqv~~~~~Vr--Y~r~~~~~e~~vigt~dgD-----~l~iyd~~~~e~kr~e~-~lg~I~av~vs~ 411 (668)
T COG4946 340 RGKAFIMRPWDGYSIQVGKKGGVR--YRRIQVDPEGDVIGTNDGD-----KLGIYDKDGGEVKRIEK-DLGNIEAVKVSP 411 (668)
T ss_pred cCcEEEECCCCCeeEEcCCCCceE--EEEEccCCcceEEeccCCc-----eEEEEecCCceEEEeeC-CccceEEEEEcC
Confidence 236677776555444444322222 2233345667788776653 48899999998766543 222222222334
Q ss_pred CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEe----cCCCeEEEEeCCCCc
Q 016421 234 DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVE----YLTNMVKKYDKLKNT 309 (390)
Q Consensus 234 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~g----g~~~~v~~yd~~~~~ 309 (390)
+|+..+++.. .-.++.+|+.++.=+.+..-.... -.-..-.-+++.+..+ -..+.+..||+++++
T Consensus 412 dGK~~vvaNd------r~el~vididngnv~~idkS~~~l-----Itdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 412 DGKKVVVAND------RFELWVIDIDNGNVRLIDKSEYGL-----ITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred CCcEEEEEcC------ceEEEEEEecCCCeeEecccccce-----eEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 6675555432 345788888888766554311100 0000111234444442 245667777777765
Q ss_pred eEEc
Q 016421 310 WDVL 313 (390)
Q Consensus 310 W~~v 313 (390)
--.+
T Consensus 481 iy~v 484 (668)
T COG4946 481 IYDV 484 (668)
T ss_pred EEEe
Confidence 4444
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=84.45 E-value=57 Score=34.22 Aligned_cols=145 Identities=14% Similarity=0.082 Sum_probs=69.6
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCc--EEE
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEM 217 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~ 217 (390)
++.+++.|+. +..+.+||..+..-.. .+........+.. -++..++.|+.+ ..+.+||..+.. ...
T Consensus 587 ~~~~L~Sgs~--Dg~v~iWd~~~~~~~~--~~~~~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~ 656 (793)
T PLN00181 587 DPTLLASGSD--DGSVKLWSINQGVSIG--TIKTKANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCT 656 (793)
T ss_pred CCCEEEEEcC--CCEEEEEECCCCcEEE--EEecCCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceE
Confidence 3456666653 3578888887654211 1111111111111 246677777654 348889987543 111
Q ss_pred cCCCCCCCcCc-eEEEECCEEEEEecccCCCccCceEEEEeCCCC----ceEEccCCCCCCCCcCCCCCEEEEECCEEEE
Q 016421 218 LPSMHSPRRLC-SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR----KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYA 292 (390)
Q Consensus 218 ~~~~~~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~----~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v 292 (390)
+ ....... .....++..++.|+.++ .+-.||+.+. .|..+..+.... ..........++.+++
T Consensus 657 ~---~~h~~~V~~v~f~~~~~lvs~s~D~------~ikiWd~~~~~~~~~~~~l~~~~gh~---~~i~~v~~s~~~~~la 724 (793)
T PLN00181 657 M---IGHSKTVSYVRFVDSSTLVSSSTDN------TLKLWDLSMSISGINETPLHSFMGHT---NVKNFVGLSVSDGYIA 724 (793)
T ss_pred e---cCCCCCEEEEEEeCCCEEEEEECCC------EEEEEeCCCCccccCCcceEEEcCCC---CCeeEEEEcCCCCEEE
Confidence 1 1111111 22234666666665432 3566777643 233222221110 0001112234567777
Q ss_pred EecCCCeEEEEeCCCC
Q 016421 293 VEYLTNMVKKYDKLKN 308 (390)
Q Consensus 293 ~gg~~~~v~~yd~~~~ 308 (390)
.|+..+.+.+|+....
T Consensus 725 sgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 725 TGSETNEVFVYHKAFP 740 (793)
T ss_pred EEeCCCEEEEEECCCC
Confidence 7877888999987544
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=84.38 E-value=67 Score=34.96 Aligned_cols=243 Identities=14% Similarity=0.081 Sum_probs=122.0
Q ss_pred ccEEEEEe-CCCeeEEEecCCCceeeCCCCCCC-----c--ccCCCCeeEEEe---CCEEEEEcccccCCeEEEEECCCC
Q 016421 97 EHWVYLVC-DPRGWEAFDPMKKKWMALPKIPCD-----E--CFNHADKESLAV---GSELLVFGRELFDFAIWKYSLVFR 165 (390)
Q Consensus 97 ~~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~-----~--~~~~~~~~~~~~---~~~iy~~Gg~~~~~~~~~yd~~t~ 165 (390)
...+|+.. +...+..+|+....-..+...... . .........+++ ++.||+.-.. .+.+.++|+.++
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~--n~~Ir~id~~~~ 656 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE--NHALREIDFVNE 656 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC--CceEEEEecCCC
Confidence 35567664 456788888865432222221000 0 000001122333 4568886432 356788888776
Q ss_pred cEeecCCC-------C--------CCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC-------
Q 016421 166 SWMKCEGM-------N--------HPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM------- 221 (390)
Q Consensus 166 ~W~~~~~~-------~--------~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~------- 221 (390)
.-+.+... . .-...+.+++- ++.+|+.... .+.+++||+.++....+..-
T Consensus 657 ~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~------~~~I~v~d~~~g~v~~~~G~G~~~~~~ 730 (1057)
T PLN02919 657 TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG------QHQIWEYNISDGVTRVFSGDGYERNLN 730 (1057)
T ss_pred EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC------CCeEEEEECCCCeEEEEecCCccccCC
Confidence 65443210 0 00111233332 6788987532 34588899877765432110
Q ss_pred ---CC--CCcCc-eEEEE-C-CEEEEEecccCCCccCceEEEEeCCCCceEEccC----CCC-------CCCC----cCC
Q 016421 222 ---HS--PRRLC-SGFFM-D-GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEG----MYP-------NVNR----AAQ 278 (390)
Q Consensus 222 ---~~--~r~~~-~~~~~-~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~----~~~-------~~~~----~~~ 278 (390)
.. ..... ..+.. + +.||+.-.. .+.|.+||+.++.-..+.. .+. .... .-.
T Consensus 731 g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 731 GSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred CCccccccccCccEEEEeCCCCEEEEEECC------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 00 00112 22322 3 459987432 3568889988765432210 000 0000 000
Q ss_pred CCCEEE-EECCEEEEEecCCCeEEEEeCCCCceEEccCCCcc----------ccCCCcceeEEEEeCCEEEEEcCCCCCC
Q 016421 279 APPLVA-VVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVR----------ADLSNGWGLAFKACGNELLVVGGQRGPE 347 (390)
Q Consensus 279 ~~~~~~-~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~----------~~~~~~~~~~~~~~~~~lyv~GG~~~~~ 347 (390)
....++ .-+|.+|+.....+.|.+||+.++....+...... ..... .+. ++.-+|+|||....+.
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P-~GI-avd~dG~lyVaDt~Nn-- 880 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP-AGL-ALGENGRLFVADTNNS-- 880 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc-eEE-EEeCCCCEEEEECCCC--
Confidence 111233 34678999998889999999999887766532110 00000 112 2234678999876432
Q ss_pred CCeEEEeeecCCCC
Q 016421 348 GENVVLNSWCPKSG 361 (390)
Q Consensus 348 ~~~~~i~~y~~~~~ 361 (390)
.|.++|++++
T Consensus 881 ----~Irvid~~~~ 890 (1057)
T PLN02919 881 ----LIRYLDLNKG 890 (1057)
T ss_pred ----EEEEEECCCC
Confidence 5778888773
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=84.25 E-value=29 Score=30.60 Aligned_cols=156 Identities=17% Similarity=0.119 Sum_probs=86.4
Q ss_pred CCEEEEEeccCCCCCccceEEEEEC----CCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCC
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDS----TTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR 261 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~----~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 261 (390)
++++|++.+... ....+..|.. ..+.+...-.+|.+-.+.+.++++|.+|.--. ....+.+||+.++
T Consensus 34 ~~~~wv~~~~~~---~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL~t~ 104 (255)
T smart00284 34 KSLYWYMPLNTR---VLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDLTTE 104 (255)
T ss_pred CceEEEEccccC---CCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEec------CCccEEEEECCCC
Confidence 478888866531 1345666643 33444333356776667778899999999532 2456899999999
Q ss_pred ceEEccCCCCCC----C---CcCCCCCEEEEECCEEEEEe---cCCC--eEEEEeCCCC----ceEEccCCCccccCCCc
Q 016421 262 KWRKIEGMYPNV----N---RAAQAPPLVAVVDNQLYAVE---YLTN--MVKKYDKLKN----TWDVLGRLPVRADLSNG 325 (390)
Q Consensus 262 ~W~~~~~~~~~~----~---~~~~~~~~~~~~~g~l~v~g---g~~~--~v~~yd~~~~----~W~~v~~~~~~~~~~~~ 325 (390)
+=.....+|... . ..+....-+++-.+-|+++= ...+ .|-+.|+.+- +|.. ..+.. .
T Consensus 105 ~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~-----s 177 (255)
T smart00284 105 TYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYNKR-----S 177 (255)
T ss_pred cEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCCcc-----c
Confidence 865444344311 0 01112234555566677772 2223 2346777663 5665 22221 1
Q ss_pred ceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 326 WGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 326 ~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+-++ .+=|.||++-... .....-.+.||..+
T Consensus 178 a~naF-mvCGvLY~~~s~~--~~~~~I~yayDt~t 209 (255)
T smart00284 178 ASNAF-MICGILYVTRSLG--SKGEKVFYAYDTNT 209 (255)
T ss_pred ccccE-EEeeEEEEEccCC--CCCcEEEEEEECCC
Confidence 22233 3347888885321 12333466799887
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.32 E-value=27 Score=34.18 Aligned_cols=109 Identities=15% Similarity=0.042 Sum_probs=56.3
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceE-
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR- 264 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~- 264 (390)
.-.||+.|- ..+++.++++.+.|-.-=....+-.++..+.--..+..+||.++ .|+.+|+.+..=.
T Consensus 145 scDly~~gs-------g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g------~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 145 SCDLYLVGS-------GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG------VVEFWDPRDKSRVG 211 (703)
T ss_pred CccEEEeec-------CcceEEEEccccccccccccccccceeeeecCccceEEecccCc------eEEEecchhhhhhe
Confidence 446777653 35699999999998431111111111111111235666676543 4788888876432
Q ss_pred Ec------cCCCCCCCCcCCCCCEEEEECCEE-EEEecCCCeEEEEeCCCCc
Q 016421 265 KI------EGMYPNVNRAAQAPPLVAVVDNQL-YAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 265 ~~------~~~~~~~~~~~~~~~~~~~~~g~l-~v~gg~~~~v~~yd~~~~~ 309 (390)
.+ .+.|.... .....++..-++.| +.+|-..+.+++||..+.+
T Consensus 212 ~l~~~~~v~s~pg~~~--~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGDA--APSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred eeecccccCCCccccc--cCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 11 11222111 11222333445344 4456677889999987654
|
|
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=82.62 E-value=28 Score=29.24 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=36.5
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEE-----c----cCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeec
Q 016421 287 DNQLYAVEYLTNMVKKYDKLKNTWDV-----L----GRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWC 357 (390)
Q Consensus 287 ~g~l~v~gg~~~~v~~yd~~~~~W~~-----v----~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~ 357 (390)
++++|++.| +..++||...++-.. + ..+|... -+++...++++|++-|. ..+.||
T Consensus 110 ~~~~yfFkg--~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~i------daa~~~~~~~~yfF~g~--------~y~~~d 173 (194)
T cd00094 110 NGKTYFFKG--DKYWRYDEKTQKMDPGYPKLIETDFPGVPDKV------DAAFRWLDGYYYFFKGD--------QYWRFD 173 (194)
T ss_pred CCEEEEEeC--CEEEEEeCCCccccCCCCcchhhcCCCcCCCc------ceeEEeCCCcEEEEECC--------EEEEEe
Confidence 689999966 678899876654321 1 1122211 13333334899999985 378888
Q ss_pred CCC
Q 016421 358 PKS 360 (390)
Q Consensus 358 ~~~ 360 (390)
..+
T Consensus 174 ~~~ 176 (194)
T cd00094 174 PRS 176 (194)
T ss_pred Ccc
Confidence 876
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=82.06 E-value=49 Score=31.72 Aligned_cols=146 Identities=10% Similarity=-0.013 Sum_probs=74.8
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 233 (390)
...++++|..+++-..+...+..........-+.+|++....++ ..+++.+|..++..+.+..-... .......-
T Consensus 219 ~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wSp 293 (427)
T PRK02889 219 KPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQSSGI-DTEPFFSP 293 (427)
T ss_pred CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCCCCC-CcCeEEcC
Confidence 45799999988876555443322111111112345555433322 35788999888776666432211 11112223
Q ss_pred CCE-EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCE-EEEEecC--CCeEEEEeCCCCc
Q 016421 234 DGK-FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQ-LYAVEYL--TNMVKKYDKLKNT 309 (390)
Q Consensus 234 ~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~-l~v~gg~--~~~v~~yd~~~~~ 309 (390)
+|+ |++.....+ ...++.+|..++..+.+..... .. ..+ ...-+|+ |+..... ...++.+|..+++
T Consensus 294 DG~~l~f~s~~~g----~~~Iy~~~~~~g~~~~lt~~g~-~~----~~~-~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 294 DGRSIYFTSDRGG----APQIYRMPASGGAAQRVTFTGS-YN----TSP-RISPDGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred CCCEEEEEecCCC----CcEEEEEECCCCceEEEecCCC-Cc----Cce-EECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence 554 554432211 2457888888777766542111 00 111 2233454 4433322 2368999999888
Q ss_pred eEEcc
Q 016421 310 WDVLG 314 (390)
Q Consensus 310 W~~v~ 314 (390)
...+.
T Consensus 364 ~~~lt 368 (427)
T PRK02889 364 VTALT 368 (427)
T ss_pred eEEcc
Confidence 77765
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.64 E-value=34 Score=29.59 Aligned_cols=138 Identities=14% Similarity=0.138 Sum_probs=79.2
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 233 (390)
...+..+||..+.--+.-.-...-..-...+.++.-++.||-+ ..+.++|..|++=..- ....-..-.++.+
T Consensus 38 drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgD------k~v~vwDV~TGkv~Rr--~rgH~aqVNtV~f 109 (307)
T KOG0316|consen 38 DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGD------KAVQVWDVNTGKVDRR--FRGHLAQVNTVRF 109 (307)
T ss_pred CceEEeecccccceeeeecCCCceeeeccccccccccccCCCC------ceEEEEEcccCeeeee--cccccceeeEEEe
Confidence 3567788888765433222111111112334455555555532 4588999998863211 1111111223344
Q ss_pred CC--EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCce
Q 016421 234 DG--KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTW 310 (390)
Q Consensus 234 ~~--~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W 310 (390)
|. .+.+-|+.+ .++..+|-.++...+++.+.... -+...+.+.+..++.|..-+.+..||+..++-
T Consensus 110 NeesSVv~SgsfD------~s~r~wDCRS~s~ePiQildea~-----D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l 177 (307)
T KOG0316|consen 110 NEESSVVASGSFD------SSVRLWDCRSRSFEPIQILDEAK-----DGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTL 177 (307)
T ss_pred cCcceEEEecccc------ceeEEEEcccCCCCccchhhhhc-----CceeEEEecccEEEeeccCCcEEEEEeeccee
Confidence 43 455555543 35677899998888887766632 23346667788888887778999999877653
|
|
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=80.76 E-value=33 Score=28.81 Aligned_cols=148 Identities=13% Similarity=0.072 Sum_probs=72.3
Q ss_pred EEEeCCEEEEEcccccCCeEEEEECCCCc--Eeec----CCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEE
Q 016421 138 SLAVGSELLVFGRELFDFAIWKYSLVFRS--WMKC----EGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYD 209 (390)
Q Consensus 138 ~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~----~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd 209 (390)
++...+.+|+|-|. .+++++..... -+.+ +.+|.. .. ++... ++++|+|-| +..++||
T Consensus 12 ~~~~~g~~y~FkG~----~~w~~~~~~~~~~p~~I~~~w~~~p~~-ID-Aa~~~~~~~~~yfFkg--------~~yw~~~ 77 (194)
T cd00094 12 VTTLRGELYFFKGR----YFWRLSPGKPPGSPFLISSFWPSLPSP-VD-AAFERPDTGKIYFFKG--------DKYWVYT 77 (194)
T ss_pred EEEeCCEEEEEeCC----EEEEEeCCCCCCCCeEhhhhCCCCCCC-cc-EEEEECCCCEEEEECC--------CEEEEEc
Confidence 34456889998763 66777765211 1111 112211 11 22222 389999955 2477777
Q ss_pred CCCCcE---EEcCCCCCCC--cCc-eEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCC--CCCcCCC
Q 016421 210 STTGRW---EMLPSMHSPR--RLC-SGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPN--VNRAAQA 279 (390)
Q Consensus 210 ~~t~~W---~~~~~~~~~r--~~~-~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--~~~~~~~ 279 (390)
..+..+ +.+.....+. ... ++... ++++|++.|. ..++||..+++-..--+-+.. ....+..
T Consensus 78 ~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~--------~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~ 149 (194)
T cd00094 78 GKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD--------KYWRYDEKTQKMDPGYPKLIETDFPGVPDK 149 (194)
T ss_pred CcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC--------EEEEEeCCCccccCCCCcchhhcCCCcCCC
Confidence 654222 1111111111 111 22223 6899999653 467788765543211000000 0000111
Q ss_pred CCEEEEE-CCEEEEEecCCCeEEEEeCCCCc
Q 016421 280 PPLVAVV-DNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 280 ~~~~~~~-~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
.-++... +|++|++-| ...++||..+++
T Consensus 150 idaa~~~~~~~~yfF~g--~~y~~~d~~~~~ 178 (194)
T cd00094 150 VDAAFRWLDGYYYFFKG--DQYWRFDPRSKE 178 (194)
T ss_pred cceeEEeCCCcEEEEEC--CEEEEEeCccce
Confidence 1123333 488999966 589999988766
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 390 | ||||
| 2vpj_A | 301 | Crystal Structure Of The Kelch Domain Of Human Klhl | 1e-04 | ||
| 2xn4_A | 302 | Crystal Structure Of The Kelch Domain Of Human Klhl | 2e-04 |
| >pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301 | Back alignment and structure |
|
| >pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2 (mayven) Length = 302 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 5e-36
Identities = 59/263 (22%), Positives = 93/263 (35%), Gaps = 30/263 (11%)
Query: 110 EAFDPMKKKWMALPKIPCDECFNHA----DKESLAVGSELLVFGRELFDFAIWKYSLVFR 165
EA++P W+ L + A AVG A+ Y+ +
Sbjct: 42 EAYNPSNGTWLRLADLQ-VPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100
Query: 166 SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPR 225
W C M+ PR G G + GGS H S E Y+ W ++ M + R
Sbjct: 101 QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIH-HNSVERYEPERDEWHLVAPMLTRR 159
Query: 226 RLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV 285
++ Y +GG + E + E +WR I M N R+ V V
Sbjct: 160 IGVGVAVLNRLLYAVGGFDGTNRLNSA-ECYYPERNEWRMITAM--NTIRSGAG---VCV 213
Query: 286 VDNQLYAV-----EYLTNMVKKYDKLKNTWDVLGRLPV-RADLSNGWGLAFKACGNELLV 339
+ N +YA + N V++YD TW + + R+ L G+ + V
Sbjct: 214 LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL----GIT--VHQGRIYV 267
Query: 340 VGGQRGPEGENVV------LNSW 356
+GG G + V ++W
Sbjct: 268 LGGYDGHTFLDSVECYDPDTDTW 290
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 9e-26
Identities = 47/237 (19%), Positives = 80/237 (33%), Gaps = 31/237 (13%)
Query: 140 AVGSELLVFG---RELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSD 196
VG + G R+ + Y+ +W++ + PR +G + GG +
Sbjct: 22 KVGRLIYTAGGYFRQSLSYLEA-YNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 80
Query: 197 KNGH---VLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCG 253
+ + + Y+ T +W M PR +DG Y +GG +
Sbjct: 81 NSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG-CIHHNSV 139
Query: 254 EEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAV------EYLTNMVKKYDKLK 307
E ++ E +W + M R VAV++ LYAV L N + Y +
Sbjct: 140 ERYEPERDEWHLVAPM--LTRRIGVG---VAVLNRLLYAVGGFDGTNRL-NSAECYYPER 193
Query: 308 NTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVV------LNSWCP 358
N W ++ + G N + GG G + N V +W
Sbjct: 194 NEWRMITAMNTIR-----SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTF 245
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-25
Identities = 43/202 (21%), Positives = 69/202 (34%), Gaps = 27/202 (13%)
Query: 173 MNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF 232
PR I GG L E Y+ + G W L + PR +G
Sbjct: 12 GLVPRGSHAPKVGRLIYTA-GGYF--RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV 68
Query: 233 MDGKFYVIGGMSSP---TVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQ 289
+ G Y +GG ++ + + ++ T +W M +V R V V+D
Sbjct: 69 VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM--SVPRNRIG---VGVIDGH 123
Query: 290 LYAV-----EYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQR 344
+YAV N V++Y+ ++ W ++ + R G+ L VGG
Sbjct: 124 IYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR-----IGVGVAVLNRLLYAVGGFD 178
Query: 345 GPEGENVV------LNSWCPKS 360
G N N W +
Sbjct: 179 GTNRLNSAECYYPERNEWRMIT 200
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 5e-25
Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 23/220 (10%)
Query: 110 EAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFG----RELFDFAIWKYSLVFR 165
+ ++PM +W + + + G + ++ +Y
Sbjct: 93 DCYNPMTNQWSPCAPMSVPRN-RIG---VGVIDGHIYAVGGSHGCIHHN-SVERYEPERD 147
Query: 166 SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPR 225
W M R G L + GG D + L SAE Y W M+ +M++ R
Sbjct: 148 EWHLVAPMLTRRIGVGVAVLNRLLYAVGGFD-GTNRLNSAECYYPERNEWRMITAMNTIR 206
Query: 226 RLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV 285
+ Y GG + E +D+ET W + M R+A + V
Sbjct: 207 SGAGVCVLHNCIYAAGGYDGQDQLNSV-ERYDVETETWTFVAPM--KHRRSALG---ITV 260
Query: 286 VDNQLYAV------EYLTNMVKKYDKLKNTWDVLGRLPVR 319
++Y + +L + V+ YD +TW + R+
Sbjct: 261 HQGRIYVLGGYDGHTFL-DSVECYDPDTDTWSEVTRMTSG 299
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 4e-10
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 10/120 (8%)
Query: 110 EAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFG----RELFDFAIWKYSLVFR 165
E + P + +W + + + + + G ++ + ++ +Y +
Sbjct: 187 ECYYPERNEWRMITAMNTIRSGAGV----CVLHNCIYAAGGYDGQDQLN-SVERYDVETE 241
Query: 166 SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPR 225
+W M H R G + GG D + L S E YD T W + M S R
Sbjct: 242 TWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHT-FLDSVECYDPDTDTWSEVTRMTSGR 300
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 2e-34
Identities = 58/276 (21%), Positives = 100/276 (36%), Gaps = 34/276 (12%)
Query: 100 VYLV--CDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFG-RELFDFA 156
+ L P+ F+P W + ++ + A + + + + G +LF
Sbjct: 15 IALFGGSQPQSCRYFNPKDYSWTDIRCPF-EKRRDAA---CVFWDNVVYILGGSQLFPIK 70
Query: 157 -IWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRW 215
+ Y++V SW G PR + + +GGS+ L E YD+ T W
Sbjct: 71 RMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESW 130
Query: 216 EMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTC---GEEFDLETRKWRKIEGMYPN 272
PSM + R +G YV GG VS E +D T W ++ M
Sbjct: 131 HTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM--I 188
Query: 273 VNRAAQAPPLVAVVDNQLYAV-----EYLTNMVKKYDKLKNTWDVLGRLPV-RADLSNGW 326
R + V ++++AV + V+ YD N W ++ +P +
Sbjct: 189 EARKNHG---LVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTV---- 241
Query: 327 GLAFKACGNELLVVGGQRGPEGENVV------LNSW 356
A A G+ + V+ G +G + + W
Sbjct: 242 KCA--AVGSIVYVLAGFQGVGRLGHILEYNTETDKW 275
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-28
Identities = 46/230 (20%), Positives = 73/230 (31%), Gaps = 30/230 (13%)
Query: 145 LLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKS 204
+ +FG + ++ SW R ++ I GGS +K
Sbjct: 15 IALFGGSQPQ-SCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ--LFPIKR 71
Query: 205 AELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR 264
+ Y+ W +PR + +GK Y GG +L E +D T W
Sbjct: 72 MDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWH 131
Query: 265 KIEGMYPNVNRAAQAPPLVAVVDNQLYAV---------EYLTNMVKKYDKLKNTWDVLGR 315
M R + + + +Y + N + YD TW L
Sbjct: 132 TKPSM--LTQRCSHG---MVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP 186
Query: 316 LPV-RADLSNGWGLAFKACGNELLVVGGQRGPEGENVV------LNSWCP 358
+ R + GL +++ VGGQ G G + V LN W
Sbjct: 187 MIEARKNH----GLV--FVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM 230
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-27
Identities = 43/222 (19%), Positives = 74/222 (33%), Gaps = 26/222 (11%)
Query: 110 EAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFG-----RELFDFAIWKYSLVF 164
+ ++ +K W + P A A ++ G Y
Sbjct: 73 DCYNVVKDSWYSKLGPPTPRDSLAA----CAAEGKIYTSGGSEVGNSALY-LFECYDTRT 127
Query: 165 RSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSD---KNGHVLKSAELYDSTTGRWEMLPSM 221
SW M RC G + + GGS +G VL S E+YD T W L M
Sbjct: 128 ESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM 187
Query: 222 HSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPP 281
R+ F+ K + +GG + L E +D++ +W+ + M
Sbjct: 188 IEARKNHGLVFVKDKIFAVGGQNGLGG-LDNVEYYDIKLNEWKMVSPM--PWKGVTVK-- 242
Query: 282 LVAVVDNQLYAV------EYLTNMVKKYDKLKNTWDVLGRLP 317
A V + +Y + L + +Y+ + W ++
Sbjct: 243 -CAAVGSIVYVLAGFQGVGRL-GHILEYNTETDKWVANSKVR 282
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 2e-21
Identities = 34/186 (18%), Positives = 57/186 (30%), Gaps = 17/186 (9%)
Query: 110 EAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVF-GRELFDFAIWKYSLVFR--- 165
E +D + W P + + +H + + V G + + +
Sbjct: 121 ECYDTRTESWHTKPSMLT-QRCSHG---MVEANGLIYVCGGSLGNNVSGRVLNSCEVYDP 176
Query: 166 ---SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH 222
+W + M R G + GG + G L + E YD W+M+ M
Sbjct: 177 ATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLG-GLDNVEYYDIKLNEWKMVSPMP 235
Query: 223 SPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPL 282
+ YV+ G L E++ ET KW + L
Sbjct: 236 WKGVTVKCAAVGSIVYVLAGFQGVGR-LGHILEYNTETDKWVANSKV----RAFPVTSCL 290
Query: 283 VAVVDN 288
+ VVD
Sbjct: 291 ICVVDT 296
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 1e-10
Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 33/150 (22%)
Query: 223 SPR---RLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQA 279
S R D + + GG + F+ + W I R A
Sbjct: 1 SMGTRPRRKKH---DYRIALFGGSQPQSC-----RYFNPKDYSWTDIRCP--FEKRRDAA 50
Query: 280 PPLVAVVDNQLYAV----EYLTNMVKKYDKLKNTWDVLGRLPV-RADLSNGWGLAFKACG 334
DN +Y + + + Y+ +K++W P R L A
Sbjct: 51 ---CVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL----AAC--AAE 101
Query: 335 NELLVVGGQRGPEGENVVLNS---WCPKSG 361
++ GG E N L + ++
Sbjct: 102 GKIYTSGGS---EVGNSALYLFECYDTRTE 128
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 9e-34
Identities = 61/294 (20%), Positives = 104/294 (35%), Gaps = 41/294 (13%)
Query: 110 EAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFG----RELFDFAIWKYSLVFR 165
E +D +++W + ++P + + + G + Y V
Sbjct: 33 ECYDFKEERWHQVAELP-SRRCRAG---MVYMAGLVFAVGGFNGSLRVR-TVDSYDPVKD 87
Query: 166 SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPR 225
W M R G+ L + GG D + L S E Y+ + W + M++ R
Sbjct: 88 QWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTG-LSSVEAYNIKSNEWFHVAPMNTRR 146
Query: 226 RLCSGFFMDGKFYVIGGMSSPT-VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVA 284
+ G Y +GG + L+ E ++ T +W I M + R+ V
Sbjct: 147 SSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEM--STRRSGAG---VG 201
Query: 285 VVDNQLYAV-----EYLTNMVKKYDKLKNTWDVLGRLPV-RADLSNGWGLAFKACGNELL 338
V++N LYAV + V+ YD N W + + + R + G+ A L
Sbjct: 202 VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA----GVC--AVNGLLY 255
Query: 339 VVGGQRGPEGENVVLNS---WCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVLG 389
VVGG G + L S + P + W V++ G V+
Sbjct: 256 VVGGDDG----SCNLASVEYYNPTTDK------WTVVSSCMSTGRSYAGVTVID 299
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 1e-27
Identities = 48/230 (20%), Positives = 86/230 (37%), Gaps = 29/230 (12%)
Query: 145 LLVFGRELFDF--AIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVL 202
++V G + ++ Y W + + RC G + + GG + +
Sbjct: 18 MVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFN-GSLRV 76
Query: 203 KSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK 262
++ + YD +W + +M R ++G Y +GG + L+ E +++++ +
Sbjct: 77 RTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDG-STGLSSVEAYNIKSNE 135
Query: 263 WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAV--------EYLTNMVKKYDKLKNTWDVLG 314
W + M N R++ V VV LYAV + L + V+ Y+ N W +
Sbjct: 136 WFHVAPM--NTRRSSVG---VGVVGGLLYAVGGYDVASRQCL-STVECYNATTNEWTYIA 189
Query: 315 RLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVV------LNSWCP 358
+ R G N L VGG GP V N+W
Sbjct: 190 EMSTRR-----SGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ 234
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 1e-23
Identities = 39/202 (19%), Positives = 69/202 (34%), Gaps = 28/202 (13%)
Query: 173 MNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF 232
M+ R + ++ G ++S E YD RW + + S R +
Sbjct: 2 MS-VRTRLRTPMNLPKLMVVVGGQ-APKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY 59
Query: 233 MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYA 292
M G + +GG + ++ + + +D +W + M R+ AV++ LYA
Sbjct: 60 MAGLVFAVGGFNG-SLRVRTVDSYDPVKDQWTSVANM--RDRRSTLG---AAVLNGLLYA 113
Query: 293 V------EYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGP 346
V L + V+ Y+ N W + + R + G L VGG
Sbjct: 114 VGGFDGSTGL-SSVEAYNIKSNEWFHVAPMNTRR-----SSVGVGVVGGLLYAVGGYDVA 167
Query: 347 EGE--------NVVLNSWCPKS 360
+ N N W +
Sbjct: 168 SRQCLSTVECYNATTNEWTYIA 189
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 9e-11
Identities = 31/153 (20%), Positives = 53/153 (34%), Gaps = 25/153 (16%)
Query: 220 SMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQA 279
SM RL + + V+GG + + E +D + +W ++ + R
Sbjct: 1 SMSVRTRLRTPMNLPKLMVVVGGQAPKAIRSV--ECYDFKEERWHQVAEL--PSRRCRAG 56
Query: 280 PPLVAVVDNQLYAV-----EYLTNMVKKYDKLKNTWDVLGRLPV-RADLSNGWGLAFKAC 333
+ + ++AV V YD +K+ W + + R+ L G A
Sbjct: 57 ---MVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL----GAA--VL 107
Query: 334 GNELLVVGGQRGPEGENVV------LNSWCPKS 360
L VGG G G + V N W +
Sbjct: 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA 140
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-33
Identities = 58/269 (21%), Positives = 100/269 (37%), Gaps = 43/269 (15%)
Query: 110 EAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFG----------RELFDFAIWK 159
E +DP ++W LP I + A S+++ + V G E D+
Sbjct: 34 EKYDPKTQEWSFLPSIT-RKRRYVA---SVSLHDRIYVIGGYDGRSRLSSVECLDYT--- 86
Query: 160 YSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219
+ W MN R L G+ +LG + ++GG D + S E YD +W ML
Sbjct: 87 -ADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRR-HTSMERYDPNIDQWSMLG 144
Query: 220 SMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQA 279
M + R G Y +GG + L E++D T W + M R+
Sbjct: 145 DMQTAREGAGLVVASGVIYCLGGYDGLNI-LNSVEKYDPHTGHWTNVTPM--ATKRSGAG 201
Query: 280 PPLVAVVDNQLYAV-----EYLTNMVKKYDKLKNTWDVLGRLPV-RADLSNGWGLAFKAC 333
VA++++ +Y V + V+ Y+ ++W + + R + G
Sbjct: 202 ---VALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV----GAT--VL 252
Query: 334 GNELLVVGGQRGPEGENVV------LNSW 356
L + G G + + ++SW
Sbjct: 253 RGRLYAIAGYDGNSLLSSIECYDPIIDSW 281
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-27
Identities = 42/203 (20%), Positives = 66/203 (32%), Gaps = 28/203 (13%)
Query: 173 MNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF 232
M PR G+ + ++ GG + E YD T W LPS+ RR +
Sbjct: 2 MQGPRTRARLGANEVL-LVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS 60
Query: 233 MDGKFYVIGGMSSPTVSLTCGEEFDLETRK---WRKIEGMYPNVNRAAQAPPLVAVVDNQ 289
+ + YVIGG L+ E D + W + M NV R + +
Sbjct: 61 LHDRIYVIGGYDG-RSRLSSVECLDYTADEDGVWYSVAPM--NVRRGLAG---ATTLGDM 114
Query: 290 LYAV------EYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQ 343
+Y +++YD + W +LG + G + +GG
Sbjct: 115 IYVSGGFDGSRRH-TSMERYDPNIDQWSMLGDMQTAR-----EGAGLVVASGVIYCLGGY 168
Query: 344 RGPEGENVV------LNSWCPKS 360
G N V W +
Sbjct: 169 DGLNILNSVEKYDPHTGHWTNVT 191
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-24
Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 14/166 (8%)
Query: 160 YSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219
Y W M R G + GG D ++L S E YD TG W +
Sbjct: 133 YDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYD-GLNILNSVEKYDPHTGHWTNVT 191
Query: 220 SMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQA 279
M + R ++ YV+GG L+ E +++ T W + M R
Sbjct: 192 PMATKRSGAGVALLNDHIYVVGGFDGTAH-LSSVEAYNIRTDSWTTVTSM--TTPRCYVG 248
Query: 280 PPLVAVVDNQLYAV------EYLTNMVKKYDKLKNTWDVLGRLPVR 319
V+ +LYA+ L + ++ YD + ++W+V+ + +
Sbjct: 249 ---ATVLRGRLYAIAGYDGNSLL-SSIECYDPIIDSWEVVTSMGTQ 290
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 9e-24
Identities = 45/200 (22%), Positives = 65/200 (32%), Gaps = 22/200 (11%)
Query: 157 IWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTT---G 213
+ KY + W + R S SL + GG D L S E D T G
Sbjct: 33 VEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSR-LSSVECLDYTADEDG 91
Query: 214 RWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNV 273
W + M+ R L + YV GG + T E +D +W + M
Sbjct: 92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDG-SRRHTSMERYDPNIDQWSMLGDM--QT 148
Query: 274 NRAAQAPPLVAVVDNQLYAV------EYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWG 327
R + V +Y + L N V+KYD W + + + G
Sbjct: 149 AREGAG---LVVASGVIYCLGGYDGLNIL-NSVEKYDPHTGHWTNVTPMATKR-----SG 199
Query: 328 LAFKACGNELLVVGGQRGPE 347
+ + VVGG G
Sbjct: 200 AGVALLNDHIYVVGGFDGTA 219
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 4e-22
Identities = 35/164 (21%), Positives = 55/164 (33%), Gaps = 11/164 (6%)
Query: 110 EAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFG----RELFDFAIWKYSLVFR 165
E +DP +W L + + + G + + ++ KY
Sbjct: 131 ERYDPNIDQWSMLGDMQT-AREGAG---LVVASGVIYCLGGYDGLNILN-SVEKYDPHTG 185
Query: 166 SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPR 225
W M R G L + GG D L S E Y+ T W + SM +PR
Sbjct: 186 HWTNVTPMATKRSGAGVALLNDHIYVVGGFD-GTAHLSSVEAYNIRTDSWTTVTSMTTPR 244
Query: 226 RLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGM 269
+ G+ Y I G ++ L+ E +D W + M
Sbjct: 245 CYVGATVLRGRLYAIAGYDGNSL-LSSIECYDPIIDSWEVVTSM 287
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-10
Identities = 28/120 (23%), Positives = 42/120 (35%), Gaps = 10/120 (8%)
Query: 110 EAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFG----RELFDFAIWKYSLVFR 165
E +DP W + + + + V G ++ Y++
Sbjct: 178 EKYDPHTGHWTNVTPMATKRSG-AG---VALLNDHIYVVGGFDGTAHLS-SVEAYNIRTD 232
Query: 166 SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPR 225
SW M PRC G+ L G D N +L S E YD WE++ SM + R
Sbjct: 233 SWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNS-LLSSIECYDPIIDSWEVVTSMGTQR 291
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 5e-33
Identities = 52/266 (19%), Positives = 88/266 (33%), Gaps = 31/266 (11%)
Query: 107 RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFG---------RELFDFAI 157
G A+DP + + + + +++ V G +
Sbjct: 13 EGAVAYDPAANECYCASLSSQVPKNHVS---LVTKENQVFVAGGLFYNEDNKEDPMSAYF 69
Query: 158 WKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGH-VLKSAELYDSTTGRW 215
++ + W+ + PRCLFG G SI ++ G K+G L S YD + +W
Sbjct: 70 LQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKW 129
Query: 216 EMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNR 275
+ + YVIGG S L +D + +W+++ M R
Sbjct: 130 GESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM--QTAR 187
Query: 276 AAQAPPLVAVVDNQLYAV-----EYLTNMVKKYDKLKNTWDVLGRLPV-RADLSNGWGLA 329
+ V D ++ LT+ + Y N W P R+ L L
Sbjct: 188 SLFG---ATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL----SLV 240
Query: 330 FKACGNELLVVGGQRGPEGENVVLNS 355
+ L +GG E E+ L
Sbjct: 241 --SLVGTLYAIGGFATLETESGELVP 264
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 9e-27
Identities = 45/255 (17%), Positives = 87/255 (34%), Gaps = 31/255 (12%)
Query: 110 EAFDPMKKKWMALPKIPCDECF---NHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS 166
FD + +W+ +P +P C A VG + G D ++ Y +
Sbjct: 70 LQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLD-SVMCYDRLSFK 128
Query: 167 WMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRR 226
W + + + + S + + GG + L +YD W+ L M + R
Sbjct: 129 WGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS 188
Query: 227 LCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV 286
L DG+ V G++ ++ + E + + KW E R++ + + +
Sbjct: 189 LFGATVHDGRIIVAAGVTDTGLTSSA-EVYSITDNKWAPFEAF--PQERSSLS---LVSL 242
Query: 287 DNQLYAV--------------EYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA 332
LYA+ N + +Y++ + W+ + R A G
Sbjct: 243 VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREIAYAA-----GAT--F 295
Query: 333 CGNELLVVGGQRGPE 347
L V+ + E
Sbjct: 296 LPVRLNVLRLTKMAE 310
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 4e-21
Identities = 36/215 (16%), Positives = 61/215 (28%), Gaps = 33/215 (15%)
Query: 165 RSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNG-----HVLKSAELYDSTTGRWEMLP 219
+ P+ + + +AGG N + +D W +P
Sbjct: 24 ECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83
Query: 220 SMHSPRRLCSGFFMDGKFYVIGGMSSP--TVSLTCGEEFDLETRKWRKIEGMYPNVNRAA 277
+ SPR L YV+GG L +D + KW + + +
Sbjct: 84 PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL--PYVVYG 141
Query: 278 QAPPLVAVVDNQLYAV-------EYLTNMVKKYDKLKNTWDVLGRLPV-RADLSNGWGLA 329
V + +Y + + L N + YD K W L + R+ G
Sbjct: 142 HT---VLSHMDLVYVIGGKGSDRKCL-NKMCVYDPKKFEWKELAPMQTARSLF----GAT 193
Query: 330 FKACGNELLVVGGQRGPEGENVV------LNSWCP 358
++V G + N W P
Sbjct: 194 --VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 5e-10
Identities = 24/145 (16%), Positives = 48/145 (33%), Gaps = 34/145 (23%)
Query: 232 FMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLY 291
F+ ++I + +D + V + + + +NQ++
Sbjct: 2 FLQDLIFMISEEGA--------VAYDPAANECYCASLS-SQVPKNHVS---LVTKENQVF 49
Query: 292 AV-----------EYLTNMVKKYDKLKNTWDVLGRLPV-RADLSNGWGLAFKACGNELLV 339
+ ++ ++D L + W + LP R GL N + V
Sbjct: 50 VAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF----GLG--EALNSIYV 103
Query: 340 VGGQRGPEGENVVLNS---WCPKSG 361
VGG+ +GE L+S + S
Sbjct: 104 VGGREIKDGER-CLDSVMCYDRLSF 127
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 7e-32
Identities = 45/264 (17%), Positives = 89/264 (33%), Gaps = 34/264 (12%)
Query: 110 EAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDF---------AIWKY 160
A+DPM+ + + + + +++ V G D ++
Sbjct: 27 VAYDPMENECYLTALAEQIPRNHSS---IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQL 83
Query: 161 SLVFRSWMKCEGMNHPRCLFGSGSL-GSI-AIIAGGSDKNG-HVLKSAELYDSTTGRWEM 217
V W+ + RCLFG G + I + G D L S YD +W
Sbjct: 84 DNVSSEWVGLPPLPSARCLFGLGEVDDKIYVV--AGKDLQTEASLDSVLCYDPVAAKWSE 141
Query: 218 LPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAA 277
+ ++ + +G Y +GG + ++ + W+ + M R+
Sbjct: 142 VKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM--KTPRSM 199
Query: 278 QAPPLVAVVDNQLYAV-----EYLTNMVKKYDKLKNTWDVLGRLPV-RADLSNGWGLAFK 331
VA+ ++ + L+ V+ +D N W+V+ P R+ + L
Sbjct: 200 FG---VAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI----SLV-- 250
Query: 332 ACGNELLVVGGQRGPEGENVVLNS 355
+ L +GG + E+
Sbjct: 251 SLAGSLYAIGGFAMIQLESKEFAP 274
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 2e-20
Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 24/194 (12%)
Query: 110 EAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWK----YSLVFR 165
+DP+ KW + +P + + H ++ + G + D Y+
Sbjct: 130 LCYDPVAAKWSEVKNLPI-KVYGHN---VISHNGMIYCLGGKTDDKKCTNRVFIYNPKKG 185
Query: 166 SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPR 225
W M PR +FG +IAGG ++G + S E +D T +WE++ R
Sbjct: 186 DWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDG-LSASVEAFDLKTNKWEVMTEFPQER 244
Query: 226 RLCSGFFMDGKFYVIGGMSSPTVSLTCG--------EEFDLETRKWRKIEGMYPNVNRAA 277
S + G Y IGG + + +++ + ++W + R A
Sbjct: 245 SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM----LKEIRYA 300
Query: 278 QAPPLVAVVDNQLY 291
+ + +L
Sbjct: 301 SG---ASCLATRLN 311
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 3e-16
Identities = 41/231 (17%), Positives = 76/231 (32%), Gaps = 50/231 (21%)
Query: 174 NHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRW-EMLPSMHSPRRLCSGFF 232
+ PR G I ++ + +A YD + PR S
Sbjct: 6 DIPRH--GMFVKDLILLV-NDT--------AAVAYDPMENECYLTALAEQIPRNHSSIVT 54
Query: 233 MDGKFYVIGGM-----SSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVD 287
+ YV+GG+ + + + D + +W + + R + VD
Sbjct: 55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL--PSARCLFG---LGEVD 109
Query: 288 NQLYAV-------EYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVV 340
+++Y V E + V YD + W + LP++ +G + + +
Sbjct: 110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKV-----YGHNVISHNGMIYCL 164
Query: 341 GGQRGPEGENVVLNS---WCPKSGVNNGTLDWKVLAE----KQHVGVFVYN 384
GG+ + N + PK G WK LA + GV ++
Sbjct: 165 GGKT---DDKKCTNRVFIYNPKKGD------WKDLAPMKTPRSMFGVAIHK 206
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 97.3 bits (242), Expect = 8e-23
Identities = 34/296 (11%), Positives = 75/296 (25%), Gaps = 57/296 (19%)
Query: 110 EAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFG---RELFDFAIWKYSLVFRS 166
++P W+ L H + + V G + +F+ + +
Sbjct: 89 HKYNPKTNSWVKLMSHAPMGMAGHV---TFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKD 145
Query: 167 WMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM-HSPR 225
+ +N ++ K +D +T +W
Sbjct: 146 STAIDKINAHYF--------------DKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGT 191
Query: 226 RLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV 285
+ K ++I G + P + E D + + + +
Sbjct: 192 AGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG-GFAGI 250
Query: 286 VDNQLYAV----------------------EYLTNMVKKYDKLKNTWDVLGRLPVRADLS 323
++ L + + WD G L
Sbjct: 251 SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGR--- 307
Query: 324 NGWGLAFKACGNELLVVGGQ--RGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQH 377
+G++ N LL++GG+ G + VL + + + + L H
Sbjct: 308 -AYGVSL-PWNNSLLIIGGETAGGKAVTDSVLITV------KDNKVTVQNLEHHHH 355
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 83.1 bits (205), Expect = 7e-18
Identities = 29/215 (13%), Positives = 57/215 (26%), Gaps = 49/215 (22%)
Query: 173 MNHPRCLFGSGSLGSIAIIAGGSDKNG-HVLKSAELYDSTTGRWEMLPSM-HSPRRLCSG 230
P I GS + L + +W L + PR +
Sbjct: 6 TPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLD----TQAKDKKWTALAAFPGGPRDQATS 61
Query: 231 FFMDGKFYVIGGMSSPT----VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV 286
F+DG YV GG+ + +++ +T W K+ P + A V
Sbjct: 62 AFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAP-MGMAGHV---TFVH 117
Query: 287 DNQLYAV-----EYLTNMVKKYDKLKNTWDVLGRLPVRADL------------------S 323
+ + Y + ++ + ++ +
Sbjct: 118 NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPST 177
Query: 324 NGW------------GLAFKACGNELLVVGGQRGP 346
W G A G++ ++ G+ P
Sbjct: 178 QQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKP 212
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 2e-12
Identities = 28/187 (14%), Positives = 61/187 (32%), Gaps = 28/187 (14%)
Query: 107 RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDF----AIWKYSL 162
+ +FDP ++W + P A + G + + E A+++
Sbjct: 168 KFLLSFDPSTQQWSYAGESPWYGTAGAA---VVNKGDKTWLINGEAKPGLRTDAVFELDF 224
Query: 163 --VFRSWMKCEGMNHPRCLFG--SGSLGSIAIIAGGSDKNG----------------HVL 202
W K ++ P + G +G I AGG+ G
Sbjct: 225 TGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKS 284
Query: 203 KSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK 262
S +++ G+W+ + R + +IGG ++ ++T ++ K
Sbjct: 285 YSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNK 344
Query: 263 WRKIEGM 269
++ +
Sbjct: 345 V-TVQNL 350
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 3e-11
Identities = 30/184 (16%), Positives = 50/184 (27%), Gaps = 27/184 (14%)
Query: 217 MLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRA 276
+LP P + +G + Y+ G + + + +KW + P R
Sbjct: 2 VLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKL---DTQAKDKKWTALAAF-PGGPRD 57
Query: 277 AQAPPLVAVVDNQLYAV----------EYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGW 326
A +D LY + N V KY+ N+W L
Sbjct: 58 QAT---SAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGM----A 110
Query: 327 GLAFKACGNELLVVGGQRGP------EGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGV 380
G + V GG E N +N D K + +
Sbjct: 111 GHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFL 170
Query: 381 FVYN 384
++
Sbjct: 171 LSFD 174
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 64.0 bits (155), Expect = 3e-11
Identities = 23/186 (12%), Positives = 53/186 (28%), Gaps = 21/186 (11%)
Query: 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFG--RELFDF 155
+ + + + C+ N + G+++ G
Sbjct: 353 EFAFTQGFLFDRSISEINLTVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYRVN 412
Query: 156 AIWKYSLVFRSWMKCEG-----------MNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKS 204
I + S+ + M H + ++ GG L
Sbjct: 413 EILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ---LLLIGGRKAPHQGLSD 469
Query: 205 AELYDSTTGRWEMLPSMHSPR-RLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKW 263
++D T W M+ S+ R R + DG ++GG++ L +++ +
Sbjct: 470 NWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAML----LYNVTEEIF 525
Query: 264 RKIEGM 269
+ +
Sbjct: 526 KDVTPK 531
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 63.2 bits (153), Expect = 6e-11
Identities = 27/207 (13%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 110 EAFDPMKKKWMALPKIPCDECFNHADKESLAVG-SELLVFGRELFDFAIWKYSLVFRSWM 168
FD ++W + + F H+ + ++ +L+ G A+ Y++ +
Sbjct: 471 WIFDMKTREWSMIKSLSH-TRFRHS---ACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK 526
Query: 169 KCEGMN--------HPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELY----DSTTGRWE 216
+ F S I I+ GG V A ++ ++ T
Sbjct: 527 DVTPKDEFFQNSLVSAGLEFDPVSKQGI-ILGGGFMDQTTVSDKAIIFKYDAENATEPIT 585
Query: 217 MLPSMHSP---RRLCSG-FFMDGKFYVIGGMSSPTVSLTCGE--EFDLETRKWRKIEGMY 270
++ + P R + K ++GG S + D + I
Sbjct: 586 VIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISR 645
Query: 271 PNVNRAAQAPPL------VAVVDNQLY 291
+ V+ ++
Sbjct: 646 R---IWEDHSLMLAGFSLVSTSMGTIH 669
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-04
Identities = 15/163 (9%), Positives = 41/163 (25%), Gaps = 33/163 (20%)
Query: 109 WEAFDPMKKKWMALP---KIPCDECFNHADKESLAVGSELLVFGR----ELFDFAIWKYS 161
++ ++ + + + + + + +++ G +
Sbjct: 515 MLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFK 574
Query: 162 L----VFRSWMKCEGMNHPR--------CLFGSGSLGSIAIIAGGSDKNGHVLKSAEL-- 207
+ + HP L +I GG+ +G ++ +
Sbjct: 575 YDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKL----LIVGGTSPSGLFDRTNSIIS 630
Query: 208 YDSTTGRWEMLPSMHSPRRLCSGFFM--------DGKFYVIGG 242
D + +P S G ++IGG
Sbjct: 631 LDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 58.8 bits (141), Expect = 2e-09
Identities = 41/290 (14%), Positives = 69/290 (23%), Gaps = 36/290 (12%)
Query: 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFA 156
+ + ++DP G ++ G
Sbjct: 209 DAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN--DAKK 266
Query: 157 IWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGR 214
Y SW+ M R S ++ G + GGS G K+ E+Y ++
Sbjct: 267 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRV-FTIGGSWSGGVFEKNGEVYSPSSKT 325
Query: 215 WEMLPSMHSPRRLC----SGFFMDGKFYVIGGMSSPTV----SLTCGEEFDLETRKWRKI 266
W LP+ L + D ++ G S + + +
Sbjct: 326 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA 385
Query: 267 EGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT------------------NMVKKYDKLKN 308
N A A AV+ + + LT + + N
Sbjct: 386 GKRQSNRGVAPDAMCGNAVMYDA-VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN 444
Query: 309 TWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCP 358
T L L + GGQR + P
Sbjct: 445 TVFASNGLYFARTFHTSVVL----PDGSTFITGGQRRGIPFEDSTPVFTP 490
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 51.1 bits (121), Expect = 4e-07
Identities = 22/140 (15%), Positives = 40/140 (28%), Gaps = 24/140 (17%)
Query: 140 AVGSELLVFG-----------RELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--- 185
AV ++L FG + + + G+ R F + +
Sbjct: 408 AVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART-FHTSVVLPD 466
Query: 186 GSIAIIAGGSD----KNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSG--FFMDGKFYV 239
GS I G ++ + + E+Y + R S DG+ +
Sbjct: 467 GSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFN 526
Query: 240 IGGMSSPTVSLTCGEEFDLE 259
GG + FD +
Sbjct: 527 GGGGLCGDCTTN---HFDAQ 543
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 390 | |||
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 99.98 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.98 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.96 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.11 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.06 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.96 | |
| 1fs1_A | 53 | SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L | 98.77 | |
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 98.45 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.38 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.3 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.27 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.16 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.16 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.05 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.97 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.71 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.62 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.61 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.6 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.58 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 97.5 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.45 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.42 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.35 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 97.34 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 97.34 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 97.33 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 97.32 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.3 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.28 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.24 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.24 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 97.23 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 97.22 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.17 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.15 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.15 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 97.1 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.09 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.08 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.06 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.03 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.02 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 96.99 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 96.98 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.94 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.91 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 96.88 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.87 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 96.84 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.83 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.82 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 96.81 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 96.8 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 96.8 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 96.76 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.72 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 96.7 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 96.7 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.69 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.64 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.6 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 96.56 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.56 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 96.54 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.52 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.52 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 96.49 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 96.46 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.46 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 96.46 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.43 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.43 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 96.41 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.4 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.4 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 96.37 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.36 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 96.35 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 96.34 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 96.32 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.31 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 96.3 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 96.28 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.28 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 96.27 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 96.24 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 96.23 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 96.2 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 96.19 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.19 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 96.19 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 96.17 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 96.14 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 96.1 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 96.07 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 96.04 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 96.04 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 96.04 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 96.03 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 96.03 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 96.02 | |
| 3ju4_A | 670 | Endo-N-acetylneuraminidase; endonf, polysia, high- | 96.01 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 96.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 96.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 96.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 95.96 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 95.88 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 95.87 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 95.87 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 95.86 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 95.85 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 95.77 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.76 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 95.73 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 95.68 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 95.61 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 95.6 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 95.52 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 95.49 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 95.49 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 95.48 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 95.48 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.43 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 95.4 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 95.4 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 95.39 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 95.38 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 95.33 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 95.28 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 95.25 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 95.21 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 95.21 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 95.19 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 95.18 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 95.17 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 95.14 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 95.14 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 95.05 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 95.04 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 95.03 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 95.0 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 94.95 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 94.95 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 94.9 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 94.88 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 94.84 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 94.77 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 94.75 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 94.75 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 94.75 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 94.73 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 94.71 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 94.69 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 94.68 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 94.68 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 94.68 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 94.64 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 94.57 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 94.55 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 94.54 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 94.44 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 94.44 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 94.15 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 94.1 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 93.98 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 93.94 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 93.93 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 93.93 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 93.93 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 93.91 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 93.9 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 93.87 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 93.85 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 93.84 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 93.81 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 93.81 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 93.76 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 93.63 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 93.56 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 93.55 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 93.47 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 93.45 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 93.43 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 93.38 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 93.07 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 92.79 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 92.7 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 92.46 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 92.23 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 92.13 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 92.12 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 91.86 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 91.76 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 91.73 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 91.73 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 91.53 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 91.42 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 91.32 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 91.12 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 91.08 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 91.06 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 91.04 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 90.99 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 90.93 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 90.92 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 90.59 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 90.46 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 89.91 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 89.83 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 89.46 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 89.31 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 89.05 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 89.02 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 88.91 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 88.84 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 88.76 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 88.72 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 88.6 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 88.54 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 88.08 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 88.02 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 87.89 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 87.61 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 87.61 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 87.53 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 87.5 | |
| 1pex_A | 207 | Collagenase-3, MMP-13; C-terminal hemopexin-like d | 87.44 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 87.29 | |
| 3oyo_A | 225 | Hemopexin fold protein CP4; seeds, plant protein; | 85.81 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 85.72 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 85.53 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 85.38 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 84.83 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 84.72 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 84.37 | |
| 1itv_A | 195 | MMP9; adaptive molecular recognition, beta propell | 84.21 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 83.97 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 83.7 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 83.66 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 83.25 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 83.03 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 82.74 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 81.98 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 81.18 |
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=323.01 Aligned_cols=272 Identities=20% Similarity=0.280 Sum_probs=235.7
Q ss_pred ccEEEEEeC---CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc--cCCeEEEEECCCCcEeecC
Q 016421 97 EHWVYLVCD---PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL--FDFAIWKYSLVFRSWMKCE 171 (390)
Q Consensus 97 ~~~l~~~~~---~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~--~~~~~~~yd~~t~~W~~~~ 171 (390)
.+.||++|| ..+++.||+.+++|..++++|.++.. +++++.++.||++||.. ..+++++||+.+++|+.++
T Consensus 11 ~~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~ 86 (306)
T 3ii7_A 11 HDYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRD----AACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKL 86 (306)
T ss_dssp CCEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBS----CEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEE
T ss_pred cceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccce----eEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECC
Confidence 467999987 57899999999999999999886643 45677899999999965 4478999999999999999
Q ss_pred CCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCc---
Q 016421 172 GMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTV--- 248 (390)
Q Consensus 172 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~--- 248 (390)
++|.+|..|++++++++||++||.+......+++++||+.+++|+.++++|.+|..|+++.++++||++||......
T Consensus 87 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 87 GPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCE
T ss_pred CCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCccc
Confidence 99999999999999999999999874445688999999999999999999999999999999999999999876442
Q ss_pred cCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----CCeEEEEeCCCCceEEccCCCccccCC
Q 016421 249 SLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-----TNMVKKYDKLKNTWDVLGRLPVRADLS 323 (390)
Q Consensus 249 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-----~~~v~~yd~~~~~W~~v~~~~~~~~~~ 323 (390)
..+++++||+.+++|+.++++|. +|..+++++++++||++||. .+++++||+++++|+.++.+|.++.
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~-----~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-- 239 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIE-----ARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV-- 239 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSS-----CCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS--
T ss_pred ccceEEEeCCCCCeEEECCCccc-----hhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc--
Confidence 27889999999999999998887 45677899999999999984 4789999999999999999887654
Q ss_pred CcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccCccCeEEeeeeeec
Q 016421 324 NGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVLG 389 (390)
Q Consensus 324 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~ 389 (390)
++++++++++|||+||.++.. ...++++||+++ ++|+.++++|..+..+.++++.+
T Consensus 240 ---~~~~~~~~~~i~v~GG~~~~~-~~~~~~~yd~~~------~~W~~~~~~~~~r~~~~~~~~~~ 295 (306)
T 3ii7_A 240 ---TVKCAAVGSIVYVLAGFQGVG-RLGHILEYNTET------DKWVANSKVRAFPVTSCLICVVD 295 (306)
T ss_dssp ---CCEEEEETTEEEEEECBCSSS-BCCEEEEEETTT------TEEEEEEEEECCSCTTCEEEEEE
T ss_pred ---ceeEEEECCEEEEEeCcCCCe-eeeeEEEEcCCC------CeEEeCCCcccccceeEEEEECC
Confidence 356778899999999987543 556899999999 89999999987777666666554
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-43 Score=319.45 Aligned_cols=269 Identities=22% Similarity=0.348 Sum_probs=232.6
Q ss_pred ccccEEEEEeC-----CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc-------cCCeEEEEEC
Q 016421 95 IVEHWVYLVCD-----PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL-------FDFAIWKYSL 162 (390)
Q Consensus 95 ~~~~~l~~~~~-----~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~-------~~~~~~~yd~ 162 (390)
..++.||++|| ..++++||+.+++|..++++|.++.. ++++..++.||++||.. ..+++++||+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG----LAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS----CEEEEETTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc----ceEEEECCEEEEECCCcCCCCCCeecceEEEECC
Confidence 34688999987 47899999999999999999887653 34677899999999972 3468999999
Q ss_pred CCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEec
Q 016421 163 VFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGG 242 (390)
Q Consensus 163 ~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG 242 (390)
.+++|+.++++|.+|..+++++++++||++||.... ...+++++||+.+++|+.++++|.+|..++++.++++||++||
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 176 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 176 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred CCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeC
Confidence 999999999999999999999999999999998754 3578899999999999999999999999999999999999999
Q ss_pred ccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----CCeEEEEeCCCCceEEccCCC
Q 016421 243 MSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-----TNMVKKYDKLKNTWDVLGRLP 317 (390)
Q Consensus 243 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-----~~~v~~yd~~~~~W~~v~~~~ 317 (390)
.+... ..+++++||+.+++|+.++++|. +|..+++++++++||++||. .+++++||+++++|+.++.+|
T Consensus 177 ~~~~~-~~~~~~~yd~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 250 (308)
T 1zgk_A 177 FDGTN-RLNSAECYYPERNEWRMITAMNT-----IRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK 250 (308)
T ss_dssp BCSSC-BCCCEEEEETTTTEEEECCCCSS-----CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS
T ss_pred CCCCC-cCceEEEEeCCCCeEeeCCCCCC-----ccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC
Confidence 87654 47889999999999999998887 45667889999999999985 478999999999999999888
Q ss_pred ccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccCccCeEEeeee
Q 016421 318 VRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCA 386 (390)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~ 386 (390)
.++. ++++++++++|||+||.++. ....++++||+++ ++|+.+++||..+..+.+|+
T Consensus 251 ~~r~-----~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~~------~~W~~~~~~p~~r~~~~~~~ 307 (308)
T 1zgk_A 251 HRRS-----ALGITVHQGRIYVLGGYDGH-TFLDSVECYDPDT------DTWSEVTRMTSGRSGVGVAV 307 (308)
T ss_dssp SCCB-----SCEEEEETTEEEEECCBCSS-CBCCEEEEEETTT------TEEEEEEECSSCCBSCEEEE
T ss_pred CCcc-----ceEEEEECCEEEEEcCcCCC-cccceEEEEcCCC------CEEeecCCCCCCcccceeEe
Confidence 7654 35677889999999998753 3456899999999 89999999987766655544
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-43 Score=317.04 Aligned_cols=269 Identities=21% Similarity=0.355 Sum_probs=230.7
Q ss_pred ccEEEEEeC-----CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc---cCCeEEEEECCCCcEe
Q 016421 97 EHWVYLVCD-----PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL---FDFAIWKYSLVFRSWM 168 (390)
Q Consensus 97 ~~~l~~~~~-----~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~---~~~~~~~yd~~t~~W~ 168 (390)
++.+|++|| ..++++||+.+++|..++++|.++.. +.++..++.||++||.. ..+++++||+.+++|+
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR----AGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS----CEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc----ceEEEECCEEEEEeCcCCCccccceEEECCCCCcee
Confidence 567999986 36789999999999999999886643 34677899999999965 3468999999999999
Q ss_pred ecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCC-
Q 016421 169 KCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPT- 247 (390)
Q Consensus 169 ~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~- 247 (390)
.++++|.+|..|++++++++||++||.... ...+++++||+.+++|+.++++|.+|..++++.++++||++||.+...
T Consensus 91 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASR 169 (302)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTT
T ss_pred eCCCCCccccceEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCC
Confidence 999999999999999999999999998754 357899999999999999999999999999999999999999987643
Q ss_pred ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----CCeEEEEeCCCCceEEccCCCccccC
Q 016421 248 VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-----TNMVKKYDKLKNTWDVLGRLPVRADL 322 (390)
Q Consensus 248 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-----~~~v~~yd~~~~~W~~v~~~~~~~~~ 322 (390)
...+++++||+.+++|+.++++|. +|..+++++++++||++||. .+++++||+++++|+.++.+|.++.
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~- 243 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAEMST-----RRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR- 243 (302)
T ss_dssp EECCCEEEEETTTTEEEEECCCSS-----CCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB-
T ss_pred ccccEEEEEeCCCCcEEECCCCcc-----ccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc-
Confidence 357889999999999999998887 45667899999999999984 4689999999999999998887654
Q ss_pred CCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec-ccCccCeEEeeeee
Q 016421 323 SNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA-EKQHVGVFVYNCAV 387 (390)
Q Consensus 323 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~-~~p~~~~~~~~~~~ 387 (390)
+++++.++++||++||.++. ....++++||+++ ++|+.++ .||..+..+.+|++
T Consensus 244 ----~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~~------~~W~~~~~~~~~~r~~~~~~~~ 298 (302)
T 2xn4_A 244 ----NAGVCAVNGLLYVVGGDDGS-CNLASVEYYNPTT------DKWTVVSSCMSTGRSYAGVTVI 298 (302)
T ss_dssp ----SCEEEEETTEEEEECCBCSS-SBCCCEEEEETTT------TEEEECSSCCSSCCBSCEEEEE
T ss_pred ----cCeEEEECCEEEEECCcCCC-cccccEEEEcCCC------CeEEECCcccCcccccceEEEe
Confidence 35677889999999998654 2456799999999 8999997 78766665555544
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-42 Score=311.16 Aligned_cols=269 Identities=20% Similarity=0.347 Sum_probs=232.0
Q ss_pred cccEEEEEeC-------CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc---cCCeEEEEECCCC
Q 016421 96 VEHWVYLVCD-------PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL---FDFAIWKYSLVFR 165 (390)
Q Consensus 96 ~~~~l~~~~~-------~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~---~~~~~~~yd~~t~ 165 (390)
.++.+|++|| ..++++||+.+++|..++++|.++.. ++++..++.||++||.. ..+++++||+.++
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRY----VASVSLHDRIYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBS----CEEEEETTEEEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcc----ccEEEECCEEEEEcCCCCCccCceEEEEECCCC
Confidence 4678999987 46889999999999999988876543 45677899999999965 3468999999999
Q ss_pred c---EeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEec
Q 016421 166 S---WMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGG 242 (390)
Q Consensus 166 ~---W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG 242 (390)
+ |+.++++|.+|..|++++++++||++||..... ..+++++||+.+++|+.++++|.+|..+++++++++||++||
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 167 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGG 167 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECC
T ss_pred CCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECC
Confidence 9 999999999999999999999999999987543 578999999999999999999999999999999999999999
Q ss_pred ccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----CCeEEEEeCCCCceEEccCCC
Q 016421 243 MSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-----TNMVKKYDKLKNTWDVLGRLP 317 (390)
Q Consensus 243 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-----~~~v~~yd~~~~~W~~v~~~~ 317 (390)
.+... ..+++++||+.+++|+.++++|. +|..+++++++++||++||. .+++++||+++++|+.++.+|
T Consensus 168 ~~~~~-~~~~~~~~d~~~~~W~~~~~~p~-----~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 168 YDGLN-ILNSVEKYDPHTGHWTNVTPMAT-----KRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp BCSSC-BCCCEEEEETTTTEEEEECCCSS-----CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred CCCCc-ccceEEEEeCCCCcEEeCCCCCc-----ccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 87643 57889999999999999998887 45667899999999999985 578999999999999999888
Q ss_pred ccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccCccCeEEeeeee
Q 016421 318 VRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAV 387 (390)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~ 387 (390)
.++. +++++.++++||++||..+. ....++++||+++ ++|+.++.||..+..+.+|++
T Consensus 242 ~~r~-----~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~~------~~W~~~~~~~~~r~~~~~~~~ 299 (301)
T 2vpj_A 242 TPRC-----YVGATVLRGRLYAIAGYDGN-SLLSSIECYDPII------DSWEVVTSMGTQRCDAGVCVL 299 (301)
T ss_dssp SCCB-----SCEEEEETTEEEEECCBCSS-SBEEEEEEEETTT------TEEEEEEEEEEEEESCEEEEE
T ss_pred Cccc-----ceeEEEECCEEEEEcCcCCC-cccccEEEEcCCC------CeEEEcCCCCcccccceEEEe
Confidence 7654 35677889999999997654 3567899999999 799999999776655555544
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=315.76 Aligned_cols=259 Identities=17% Similarity=0.300 Sum_probs=217.4
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc---------cCCeEEEEECCCCcE
Q 016421 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL---------FDFAIWKYSLVFRSW 167 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~---------~~~~~~~yd~~t~~W 167 (390)
++.|+++|+ .++++|||.+++|.. +++|.+. .+..+++++.++.||++||.. ..+++++||+.+++|
T Consensus 4 ~~~l~~~GG-~~~~~yd~~~~~W~~-~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 79 (315)
T 4asc_A 4 QDLIFMISE-EGAVAYDPAANECYC-ASLSSQV--PKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW 79 (315)
T ss_dssp EEEEEEEET-TEEEEEETTTTEEEE-EECCCCS--CSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred ceEEEEEcC-CceEEECCCCCeEec-CCCCCCC--CccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence 456788876 789999999999986 6665432 122345667799999999952 124589999999999
Q ss_pred eecCCCCCCCcceeeeeeCCEEEEEeccCC--CCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccC
Q 016421 168 MKCEGMNHPRCLFGSGSLGSIAIIAGGSDK--NGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSS 245 (390)
Q Consensus 168 ~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~--~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 245 (390)
+.++++|.+|..|++++++++||++||... .....+++++||+.+++|+.++++|.+|..|+++.++++||++||...
T Consensus 80 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 159 (315)
T 4asc_A 80 LGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGS 159 (315)
T ss_dssp EECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCT
T ss_pred EECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCC
Confidence 999999999999999999999999999752 234688999999999999999999999999999999999999999965
Q ss_pred CCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----CCeEEEEeCCCCceEEccCCCccc
Q 016421 246 PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-----TNMVKKYDKLKNTWDVLGRLPVRA 320 (390)
Q Consensus 246 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-----~~~v~~yd~~~~~W~~v~~~~~~~ 320 (390)
.....+++++||+.+++|+.++++|. +|..+++++++++||++||. .+++++||+++++|+.++++|.++
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 234 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQT-----ARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQER 234 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCSS-----CCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCC
T ss_pred CCcccceEEEEeCCCCeEEECCCCCC-----chhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcc
Confidence 55678899999999999999999887 56677899999999999984 358999999999999999988776
Q ss_pred cCCCcceeEEEEeCCEEEEEcCCCCC----C----CCeEEEeeecCCCCCCCCCCceEEeccc
Q 016421 321 DLSNGWGLAFKACGNELLVVGGQRGP----E----GENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 321 ~~~~~~~~~~~~~~~~lyv~GG~~~~----~----~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
. ++++++++++|||+||..+. . ....++++||+++ ++|+.+.+.
T Consensus 235 ~-----~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~------~~W~~~~~~ 286 (315)
T 4asc_A 235 S-----SLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEE------KKWEGVLRE 286 (315)
T ss_dssp B-----SCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTT------TEEEEEESC
T ss_pred c-----ceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCC------ChhhhhccC
Confidence 4 35677899999999997532 1 2357899999999 799999433
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=309.59 Aligned_cols=268 Identities=16% Similarity=0.294 Sum_probs=220.1
Q ss_pred cccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc---------cCCeEEEEECCCCc
Q 016421 96 VEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL---------FDFAIWKYSLVFRS 166 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~---------~~~~~~~yd~~t~~ 166 (390)
.++.+|++|+ ..+++|||.+++|.. ++++.+. .+..++++..++.||++||.. ..+.+++||+.+++
T Consensus 14 ~~~~i~~~GG-~~~~~yd~~~~~W~~-~~~~~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~ 89 (318)
T 2woz_A 14 VKDLILLVND-TAAVAYDPMENECYL-TALAEQI--PRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE 89 (318)
T ss_dssp EEEEEEEECS-SEEEEEETTTTEEEE-EEECTTS--CSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE
T ss_pred ecchhhhccc-cceEEECCCCCceec-ccCCccC--CccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc
Confidence 3567888876 468999999999988 3444321 122245667799999999942 12348999999999
Q ss_pred EeecCCCCCCCcceeeeeeCCEEEEEeccCC-CCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccC
Q 016421 167 WMKCEGMNHPRCLFGSGSLGSIAIIAGGSDK-NGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSS 245 (390)
Q Consensus 167 W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 245 (390)
|+.++++|.+|..|++++++++||++||... .....+++++||+.+++|+.++++|.+|..|++++++++||++||...
T Consensus 90 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 169 (318)
T 2woz_A 90 WVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTD 169 (318)
T ss_dssp EEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEES
T ss_pred EEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCC
Confidence 9999999999999999999999999999863 334678999999999999999999999999999999999999999866
Q ss_pred CCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----CCeEEEEeCCCCceEEccCCCccc
Q 016421 246 PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-----TNMVKKYDKLKNTWDVLGRLPVRA 320 (390)
Q Consensus 246 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-----~~~v~~yd~~~~~W~~v~~~~~~~ 320 (390)
.....+++++||+.+++|+.++++|. +|..+++++++++||++||. .+++++||+++++|+.++.+|.++
T Consensus 170 ~~~~~~~~~~yd~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 244 (318)
T 2woz_A 170 DKKCTNRVFIYNPKKGDWKDLAPMKT-----PRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQER 244 (318)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSS-----CCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCC
T ss_pred CCCccceEEEEcCCCCEEEECCCCCC-----CcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcc
Confidence 55568899999999999999998887 45667889999999999983 468999999999999999988765
Q ss_pred cCCCcceeEEEEeCCEEEEEcCCCCCC--------CCeEEEeeecCCCCCCCCCCceEEecccCccCeEEeee
Q 016421 321 DLSNGWGLAFKACGNELLVVGGQRGPE--------GENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNC 385 (390)
Q Consensus 321 ~~~~~~~~~~~~~~~~lyv~GG~~~~~--------~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~~~~ 385 (390)
. +++++.++++||++||..... ....++++||+++ ++|+.+ +|..+..+.++
T Consensus 245 ~-----~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~------~~W~~~--~~~~r~~~~~~ 304 (318)
T 2woz_A 245 S-----SISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK------KEWAGM--LKEIRYASGAS 304 (318)
T ss_dssp B-----SCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTT------TEEEEE--ESCCGGGTTCE
T ss_pred c-----ceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCC------CEehhh--cccccccccce
Confidence 4 356788999999999986521 2356799999999 899999 54444444333
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=299.90 Aligned_cols=264 Identities=19% Similarity=0.193 Sum_probs=212.4
Q ss_pred ccEEEEEeC--CCeeEEEecC--CCceeeCCCCC-CCcccCCCCeeEEEeCCEEEEEccc-c-------cCCeEEEEECC
Q 016421 97 EHWVYLVCD--PRGWEAFDPM--KKKWMALPKIP-CDECFNHADKESLAVGSELLVFGRE-L-------FDFAIWKYSLV 163 (390)
Q Consensus 97 ~~~l~~~~~--~~~~~~~d~~--~~~W~~l~~~p-~~~~~~~~~~~~~~~~~~iy~~Gg~-~-------~~~~~~~yd~~ 163 (390)
++.||++|| ..++++||+. +++|..++++| .++.. +++++.+++||++||. . ..+++++||+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~----~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQ----ATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBS----CEEEEETTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCcc----ceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 789999986 5789999998 48999999999 55543 4567789999999997 2 24689999999
Q ss_pred CCcEeecCCCC-CCCcceeeeeeCCEEEEEeccCCCC---------------------------------CccceEEEEE
Q 016421 164 FRSWMKCEGMN-HPRCLFGSGSLGSIAIIAGGSDKNG---------------------------------HVLKSAELYD 209 (390)
Q Consensus 164 t~~W~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~~---------------------------------~~~~~~~~yd 209 (390)
+++|+.+++++ .+|..|++++++++||++||..... ...+++++||
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred CCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 99999999987 8999999999999999999976421 1357899999
Q ss_pred CCCCcEEEcCCCCCCCcC-ceEEEECCEEEEEecccCCCccCceEEEEeC--CCCceEEccCCCCCCCCcCCCCCEEEEE
Q 016421 210 STTGRWEMLPSMHSPRRL-CSGFFMDGKFYVIGGMSSPTVSLTCGEEFDL--ETRKWRKIEGMYPNVNRAAQAPPLVAVV 286 (390)
Q Consensus 210 ~~t~~W~~~~~~~~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 286 (390)
+.+++|+.++++|.++.. ++++.++++||++||..........+++||+ .+++|+.+++++.++ .+..+++++.
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~---~~~~~~~~~~ 251 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD---GVAGGFAGIS 251 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTT---CCBSCEEEEE
T ss_pred CCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCc---ccccceEEEE
Confidence 999999999999987554 8889999999999998765556778999986 999999999886643 3446678999
Q ss_pred CCEEEEEecCC----------------------CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCC
Q 016421 287 DNQLYAVEYLT----------------------NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQR 344 (390)
Q Consensus 287 ~g~l~v~gg~~----------------------~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~ 344 (390)
+++||++||.. .++++||+++++|+.++.+|.++.. ++++.++++|||+||.+
T Consensus 252 ~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-----~~~~~~~~~i~v~GG~~ 326 (357)
T 2uvk_A 252 NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY-----GVSLPWNNSLLIIGGET 326 (357)
T ss_dssp TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS-----SEEEEETTEEEEEEEEC
T ss_pred CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc-----ceeEEeCCEEEEEeeeC
Confidence 99999999842 3689999999999999998877642 56678999999999988
Q ss_pred CCCCCeEEEeeecCCCCCCCCCCceEEecccCcc
Q 016421 345 GPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHV 378 (390)
Q Consensus 345 ~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~ 378 (390)
.......+++.++.++ ++|.+..+.|+.
T Consensus 327 ~~~~~~~~v~~l~~~~------~~~~~~~~~~~~ 354 (357)
T 2uvk_A 327 AGGKAVTDSVLITVKD------NKVTVQNLEHHH 354 (357)
T ss_dssp GGGCEEEEEEEEEC-C------CSCEEEC-----
T ss_pred CCCCEeeeEEEEEEcC------cEeEeeeccccc
Confidence 7665678899999998 799999888753
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=284.72 Aligned_cols=226 Identities=19% Similarity=0.224 Sum_probs=198.8
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
.+.||++||....+++++||+.+++|..++++|.+|..|++++++++||++||.. ....+++++||+.+++|+.++++
T Consensus 11 ~~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 11 HDYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp CCEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBS--SSBCCEEEEEETTTTEEEEEECC
T ss_pred cceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCC--CCCcceEEEEeCCCCeEEECCCC
Confidence 4789999998778899999999999999999999999999999999999999987 34689999999999999999999
Q ss_pred CCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----
Q 016421 222 HSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL----- 296 (390)
Q Consensus 222 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~----- 296 (390)
|.+|..|+++.++++||++||.+......+++++||+.+++|+.++++|. +|..+++++++++||++||.
T Consensus 89 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 89 PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT-----QRCSHGMVEANGLIYVCGGSLGNNV 163 (306)
T ss_dssp SSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS-----CCBSCEEEEETTEEEEECCEESCTT
T ss_pred CccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC-----CcceeEEEEECCEEEEECCCCCCCC
Confidence 99999999999999999999997555568899999999999999999887 45667889999999999973
Q ss_pred ----CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEe
Q 016421 297 ----TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVL 372 (390)
Q Consensus 297 ----~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~ 372 (390)
.+++++||+++++|+.++++|.++. +++++.++++||++||.... ....++++||+++ ++|+.+
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~i~v~GG~~~~-~~~~~~~~yd~~~------~~W~~~ 231 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIEARK-----NHGLVFVKDKIFAVGGQNGL-GGLDNVEYYDIKL------NEWKMV 231 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEECCEETT-EEBCCEEEEETTT------TEEEEC
T ss_pred cccccceEEEeCCCCCeEEECCCccchhh-----cceEEEECCEEEEEeCCCCC-CCCceEEEeeCCC------CcEEEC
Confidence 6789999999999999998887654 36677889999999997654 3456799999999 799999
Q ss_pred cccCccCeEEeeee
Q 016421 373 AEKQHVGVFVYNCA 386 (390)
Q Consensus 373 ~~~p~~~~~~~~~~ 386 (390)
+++|..+..+.++.
T Consensus 232 ~~~p~~r~~~~~~~ 245 (306)
T 3ii7_A 232 SPMPWKGVTVKCAA 245 (306)
T ss_dssp CCCSCCBSCCEEEE
T ss_pred CCCCCCccceeEEE
Confidence 99987665554443
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=281.38 Aligned_cols=231 Identities=19% Similarity=0.312 Sum_probs=197.5
Q ss_pred eEEEeCCEEEEEccc--ccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccC---CCCCccceEEEEECC
Q 016421 137 ESLAVGSELLVFGRE--LFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSD---KNGHVLKSAELYDST 211 (390)
Q Consensus 137 ~~~~~~~~iy~~Gg~--~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~---~~~~~~~~~~~yd~~ 211 (390)
.++..++.||++||. ...+++++||+.+++|..++++|.+|..+++++++++||++||.. ......+++++||+.
T Consensus 19 ~~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 19 HAPKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp --CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred cccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 356779999999995 344789999999999999999999999999999999999999983 222357889999999
Q ss_pred CCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEE
Q 016421 212 TGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLY 291 (390)
Q Consensus 212 t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 291 (390)
+++|+.++++|.+|..+++++++++||++||.+.. ..++++++||+.+++|+.++++|. +|..+++++++++||
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iy 172 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLT-----RRIGVGVAVLNRLLY 172 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSS-----CCBSCEEEEETTEEE
T ss_pred CCeEeECCCCCcCccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECCCCCc-----cccceEEEEECCEEE
Confidence 99999999999999999999999999999998764 357889999999999999999887 456678899999999
Q ss_pred EEecC-----CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCC
Q 016421 292 AVEYL-----TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGT 366 (390)
Q Consensus 292 v~gg~-----~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~ 366 (390)
++||. .+++++||+.+++|+.++.+|.++. +++++.++++|||+||..+. ....++++||+++
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~~------ 240 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS-----GAGVCVLHNCIYAAGGYDGQ-DQLNSVERYDVET------ 240 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB-----SCEEEEETTEEEEECCBCSS-SBCCCEEEEETTT------
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc-----cceEEEECCEEEEEeCCCCC-CccceEEEEeCCC------
Confidence 99984 5789999999999999999887654 35677889999999998754 3456799999999
Q ss_pred CceEEecccCccCeEEeee
Q 016421 367 LDWKVLAEKQHVGVFVYNC 385 (390)
Q Consensus 367 ~~W~~~~~~p~~~~~~~~~ 385 (390)
++|+.++++|..+..+.++
T Consensus 241 ~~W~~~~~~p~~r~~~~~~ 259 (308)
T 1zgk_A 241 ETWTFVAPMKHRRSALGIT 259 (308)
T ss_dssp TEEEECCCCSSCCBSCEEE
T ss_pred CcEEECCCCCCCccceEEE
Confidence 7999999997666544443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=276.96 Aligned_cols=228 Identities=21% Similarity=0.417 Sum_probs=195.9
Q ss_pred EEeCCEEEEEcccc--cCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEE
Q 016421 139 LAVGSELLVFGREL--FDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE 216 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~--~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~ 216 (390)
+..++.||++||.. ..+++++||+.+++|..++++|.+|..|+++.++++||++||.... ...+++++||+.+++|+
T Consensus 12 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 12 MNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGS-LRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp ---CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSS-SBCCCEEEEETTTTEEE
T ss_pred cCCCCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCC-ccccceEEECCCCCcee
Confidence 45688999999964 3468999999999999999999999999999999999999998754 35789999999999999
Q ss_pred EcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC
Q 016421 217 MLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL 296 (390)
Q Consensus 217 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~ 296 (390)
.++++|.+|..|++++++++||++||.+... .++++++||+.+++|+.++++|. +|..+++++++++||++||.
T Consensus 91 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~ 164 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVAPMNT-----RRSSVGVGVVGGLLYAVGGY 164 (302)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEECCCSS-----CCBSCEEEEETTEEEEECCE
T ss_pred eCCCCCccccceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecCCCCC-----cccCceEEEECCEEEEEeCC
Confidence 9999999999999999999999999987643 57889999999999999999887 45667889999999999983
Q ss_pred -------CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCce
Q 016421 297 -------TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDW 369 (390)
Q Consensus 297 -------~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W 369 (390)
.+++++||+.+++|+.++.+|.++. ++++++++++||++||.++. ....++++||+++ ++|
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~------~~W 232 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTRRS-----GAGVGVLNNLLYAVGGHDGP-LVRKSVEVYDPTT------NAW 232 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEECCBSSS-SBCCCEEEEETTT------TEE
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccccc-----cccEEEECCEEEEECCCCCC-cccceEEEEeCCC------CCE
Confidence 5789999999999999998887654 35677899999999998753 3456799999999 799
Q ss_pred EEecccCccCeEEeee
Q 016421 370 KVLAEKQHVGVFVYNC 385 (390)
Q Consensus 370 ~~~~~~p~~~~~~~~~ 385 (390)
+.++++|..+..+..+
T Consensus 233 ~~~~~~~~~r~~~~~~ 248 (302)
T 2xn4_A 233 RQVADMNMCRRNAGVC 248 (302)
T ss_dssp EEECCCSSCCBSCEEE
T ss_pred eeCCCCCCccccCeEE
Confidence 9999998766554443
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=281.99 Aligned_cols=247 Identities=17% Similarity=0.150 Sum_probs=195.8
Q ss_pred eCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECC--CCcEeecCCCC-CCCcceeeeeeCCEEEEEecc-C
Q 016421 121 ALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLV--FRSWMKCEGMN-HPRCLFGSGSLGSIAIIAGGS-D 196 (390)
Q Consensus 121 ~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~--t~~W~~~~~~~-~~r~~~~~~~~~~~lyv~GG~-~ 196 (390)
.+++||.++.. +.++..++.||++||.. .+++++||+. +++|+.++++| .+|..|++++++++||++||. .
T Consensus 2 ~l~~lP~~r~~----~~~~~~~~~iyv~GG~~-~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~ 76 (357)
T 2uvk_A 2 VLPETPVPFKS----GTGAIDNDTVYIGLGSA-GTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGK 76 (357)
T ss_dssp CSCCCSSCCCS----CEEEEETTEEEEECGGG-TTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEE
T ss_pred CCCCCCccccc----eEEEEECCEEEEEeCcC-CCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCC
Confidence 46778876643 34566699999999976 3589999998 49999999999 899999999999999999998 2
Q ss_pred ---CCCCccceEEEEECCCCcEEEcCCCC-CCCcCceEEEECCEEEEEecccCCC-------------------------
Q 016421 197 ---KNGHVLKSAELYDSTTGRWEMLPSMH-SPRRLCSGFFMDGKFYVIGGMSSPT------------------------- 247 (390)
Q Consensus 197 ---~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~------------------------- 247 (390)
......+++++||+.+++|+.+++|+ .+|..+++++++++||++||.+...
T Consensus 77 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (357)
T 2uvk_A 77 NSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHY 156 (357)
T ss_dssp CTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhh
Confidence 12235789999999999999999998 8899999999999999999976421
Q ss_pred --------ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC------CCeEEEEeC--CCCceE
Q 016421 248 --------VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL------TNMVKKYDK--LKNTWD 311 (390)
Q Consensus 248 --------~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~------~~~v~~yd~--~~~~W~ 311 (390)
..++++++||+.+++|+.++++|.+ .+..+++++.+++||++||. ...+++||+ ++++|+
T Consensus 157 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~----~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~ 232 (357)
T 2uvk_A 157 FDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWY----GTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN 232 (357)
T ss_dssp HSSCGGGGCCCCEEEEEETTTTEEEEEEECSSC----CCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEE
T ss_pred ccccccccCCcccEEEEeCCCCcEEECCCCCCC----CcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEE
Confidence 1357899999999999999888763 23346789999999999983 578999976 999999
Q ss_pred EccCCCccccCCCcceeEEEEeCCEEEEEcCCCCC----------------CCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016421 312 VLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGP----------------EGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 312 ~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~----------------~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
.++.+|.++.. .++++++++++|||+||.... .....++++||+++ ++|+.++.+
T Consensus 233 ~~~~~~~~~~~---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~------~~W~~~~~~ 303 (357)
T 2uvk_A 233 KLAPVSSPDGV---AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHN------GKWDKSGEL 303 (357)
T ss_dssp ECCCSSTTTCC---BSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---------CEEEEEC
T ss_pred ecCCCCCCccc---ccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCC------CceeeCCCC
Confidence 99988765432 346788899999999996532 11235789999998 899999999
Q ss_pred CccCeEEeee
Q 016421 376 QHVGVFVYNC 385 (390)
Q Consensus 376 p~~~~~~~~~ 385 (390)
|..+..+.++
T Consensus 304 p~~r~~~~~~ 313 (357)
T 2uvk_A 304 SQGRAYGVSL 313 (357)
T ss_dssp SSCCBSSEEE
T ss_pred CCCcccceeE
Confidence 8766654443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=271.49 Aligned_cols=228 Identities=21% Similarity=0.329 Sum_probs=196.8
Q ss_pred EeCCEEEEEcc-cc---cCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc-
Q 016421 140 AVGSELLVFGR-EL---FDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR- 214 (390)
Q Consensus 140 ~~~~~iy~~Gg-~~---~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~- 214 (390)
..++.||++|| .. ..+++++||+.+++|..++++|.+|..|+++.++++||++||..+. ...+++++||+.+++
T Consensus 12 ~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 12 GANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGR-SRLSSVECLDYTADED 90 (301)
T ss_dssp -CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS-CBCCCEEEEETTCCTT
T ss_pred cCCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCC-ccCceEEEEECCCCCC
Confidence 35789999999 32 4578999999999999999999999999999999999999998743 367899999999999
Q ss_pred --EEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEE
Q 016421 215 --WEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYA 292 (390)
Q Consensus 215 --W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v 292 (390)
|+.++++|.+|..++++.++++||++||..... ..+++++||+.+++|+.++++|. +|..+++++++++||+
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv 164 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLGDMQT-----AREGAGLVVASGVIYC 164 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEEECSS-----CCBSCEEEEETTEEEE
T ss_pred CeeEECCCCCCCccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECCCCCC-----CcccceEEEECCEEEE
Confidence 999999999999999999999999999987643 47899999999999999998887 4566788999999999
Q ss_pred EecC-----CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCC
Q 016421 293 VEYL-----TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTL 367 (390)
Q Consensus 293 ~gg~-----~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~ 367 (390)
+||. .+++++||+.+++|+.++.+|.++. +++++.++++||++||..+.. ...++++||+++ +
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-----~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd~~~------~ 232 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRS-----GAGVALLNDHIYVVGGFDGTA-HLSSVEAYNIRT------D 232 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEECCBCSSS-BCCCEEEEETTT------T
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCcccc-----cceEEEECCEEEEEeCCCCCc-ccceEEEEeCCC------C
Confidence 9984 5789999999999999998887654 366778999999999987543 356799999999 7
Q ss_pred ceEEecccCccCeEEeeee
Q 016421 368 DWKVLAEKQHVGVFVYNCA 386 (390)
Q Consensus 368 ~W~~~~~~p~~~~~~~~~~ 386 (390)
+|+.++.+|..+..+.++.
T Consensus 233 ~W~~~~~~p~~r~~~~~~~ 251 (301)
T 2vpj_A 233 SWTTVTSMTTPRCYVGATV 251 (301)
T ss_dssp EEEEECCCSSCCBSCEEEE
T ss_pred cEEECCCCCCcccceeEEE
Confidence 9999999987665554443
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-36 Score=272.77 Aligned_cols=223 Identities=15% Similarity=0.156 Sum_probs=189.0
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCC--CCCCcceeeeeeCCEEEEEeccC-----CCCCccceEEEEECCCCc
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGM--NHPRCLFGSGSLGSIAIIAGGSD-----KNGHVLKSAELYDSTTGR 214 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~--~~~r~~~~~~~~~~~lyv~GG~~-----~~~~~~~~~~~yd~~t~~ 214 (390)
.+.||++|| +++++|||.+++|.. +++ |.+|..|++++++++||++||.. ......+++++||+.+++
T Consensus 4 ~~~l~~~GG----~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~ 78 (315)
T 4asc_A 4 QDLIFMISE----EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE 78 (315)
T ss_dssp EEEEEEEET----TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE
T ss_pred ceEEEEEcC----CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe
Confidence 357889998 589999999999986 555 45899999999999999999962 122245669999999999
Q ss_pred EEEcCCCCCCCcCceEEEECCEEEEEecccC--CCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEE
Q 016421 215 WEMLPSMHSPRRLCSGFFMDGKFYVIGGMSS--PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYA 292 (390)
Q Consensus 215 W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v 292 (390)
|+.++++|.+|..|+++.++++||++||.+. .....+++++||+.+++|+.++++|. +|..+++++++++||+
T Consensus 79 W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv 153 (315)
T 4asc_A 79 WLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY-----VVYGHTVLSHMDLVYV 153 (315)
T ss_dssp EEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS-----CCBSCEEEEETTEEEE
T ss_pred EEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC-----cccceeEEEECCEEEE
Confidence 9999999999999999999999999999752 34568899999999999999999887 5667789999999999
Q ss_pred EecC------CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCC
Q 016421 293 VEYL------TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGT 366 (390)
Q Consensus 293 ~gg~------~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~ 366 (390)
+||. .+++++||+.+++|+.++++|.++. ++++++++++|||+||..+. ....++++||+++
T Consensus 154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~------ 221 (315)
T 4asc_A 154 IGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS-----LFGATVHDGRIIVAAGVTDT-GLTSSAEVYSITD------ 221 (315)
T ss_dssp ECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCB-----SCEEEEETTEEEEEEEECSS-SEEEEEEEEETTT------
T ss_pred EeCCCCCCcccceEEEEeCCCCeEEECCCCCCchh-----ceEEEEECCEEEEEeccCCC-CccceEEEEECCC------
Confidence 9985 4789999999999999999887654 35677889999999998754 3567899999999
Q ss_pred CceEEecccCccCeEEeeee
Q 016421 367 LDWKVLAEKQHVGVFVYNCA 386 (390)
Q Consensus 367 ~~W~~~~~~p~~~~~~~~~~ 386 (390)
++|+.++++|..+..+.++.
T Consensus 222 ~~W~~~~~~p~~r~~~~~~~ 241 (315)
T 4asc_A 222 NKWAPFEAFPQERSSLSLVS 241 (315)
T ss_dssp TEEEEECCCSSCCBSCEEEE
T ss_pred CeEEECCCCCCcccceeEEE
Confidence 79999999987666554444
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=272.13 Aligned_cols=230 Identities=20% Similarity=0.319 Sum_probs=197.3
Q ss_pred cccEEEEEeCC------------CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc-----cCCeEE
Q 016421 96 VEHWVYLVCDP------------RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL-----FDFAIW 158 (390)
Q Consensus 96 ~~~~l~~~~~~------------~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~-----~~~~~~ 158 (390)
.++.||++||. ..++.||+.+++|..++++|.++.. +++++.+++||++||.. ..++++
T Consensus 55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL----FGLGEVDDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS----CEEEEETTEEEEEEEEBTTTCCEEEEEE
T ss_pred ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc----cceEEECCEEEEEcCccCCCCcccceEE
Confidence 47889999872 1288999999999999999987643 45677899999999964 236799
Q ss_pred EEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEE
Q 016421 159 KYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFY 238 (390)
Q Consensus 159 ~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy 238 (390)
+||+.+++|+.++++|.+|..|++++++++||++||........+++++||+.+++|+.++++|.+|..|++++++++||
T Consensus 131 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 210 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIV 210 (318)
T ss_dssp EEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEE
T ss_pred EEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEE
Confidence 99999999999999999999999999999999999986555568899999999999999999999999999999999999
Q ss_pred EEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC--------------CCeEEEEe
Q 016421 239 VIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL--------------TNMVKKYD 304 (390)
Q Consensus 239 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~--------------~~~v~~yd 304 (390)
++||.+... ..+++++||+.+++|+.++++|. +|..+++++++++||++||. .+++++||
T Consensus 211 v~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~-----~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd 284 (318)
T 2woz_A 211 IAGGVTEDG-LSASVEAFDLKTNKWEVMTEFPQ-----ERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYE 284 (318)
T ss_dssp EEEEEETTE-EEEEEEEEETTTCCEEECCCCSS-----CCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEE
T ss_pred EEcCcCCCC-ccceEEEEECCCCeEEECCCCCC-----cccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEe
Confidence 999987643 57789999999999999999887 45667899999999999984 36899999
Q ss_pred CCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcC
Q 016421 305 KLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGG 342 (390)
Q Consensus 305 ~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG 342 (390)
+++++|+++ +|.++. ++++++++++||++..
T Consensus 285 ~~~~~W~~~--~~~~r~-----~~~~~~~~~~iyi~~~ 315 (318)
T 2woz_A 285 DDKKEWAGM--LKEIRY-----ASGASCLATRLNLFKL 315 (318)
T ss_dssp TTTTEEEEE--ESCCGG-----GTTCEEEEEEEEGGGC
T ss_pred CCCCEehhh--cccccc-----cccceeeCCEEEEEEe
Confidence 999999999 555443 2456688999998753
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=276.55 Aligned_cols=216 Identities=15% Similarity=0.186 Sum_probs=182.5
Q ss_pred EEEeCCEEEEEcccc--cCCeEEEEECCCCcEeecC-C-----CCCCCcceeeeee--CCEEEEEeccCCCCCccceEEE
Q 016421 138 SLAVGSELLVFGREL--FDFAIWKYSLVFRSWMKCE-G-----MNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAEL 207 (390)
Q Consensus 138 ~~~~~~~iy~~Gg~~--~~~~~~~yd~~t~~W~~~~-~-----~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~ 207 (390)
+++.++.||++||.. ..+++++||+.+++|+.++ + +|.+|..|+++++ +++||++||........+++++
T Consensus 393 ~~~~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 393 VDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp EEECSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEE
T ss_pred EEEECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEE
Confidence 455899999999964 4568999999999999988 5 7899999999999 9999999999876556889999
Q ss_pred EECCCCcEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCceEEEEeCCCCceEEccC---CCCCCCCcCCCCCEE
Q 016421 208 YDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEG---MYPNVNRAAQAPPLV 283 (390)
Q Consensus 208 yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~ 283 (390)
||+.+++|+.+++||.+|..|+++++ +++||++||.+... ++++||+.+++|+.+++ +|. +|..+++
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~-----~r~~~~a 543 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQ-----NSLVSAG 543 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGG-----SCCBSCE
T ss_pred EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCC-----cccceeE
Confidence 99999999999999999999999996 99999999987643 79999999999999987 555 4555666
Q ss_pred EEEC---CEEEEEecC-------CCeEEEEeCCCCc------eEEccCCC-ccccCCCcceeEEEEeC-CEEEEEcCCCC
Q 016421 284 AVVD---NQLYAVEYL-------TNMVKKYDKLKNT------WDVLGRLP-VRADLSNGWGLAFKACG-NELLVVGGQRG 345 (390)
Q Consensus 284 ~~~~---g~l~v~gg~-------~~~v~~yd~~~~~------W~~v~~~~-~~~~~~~~~~~~~~~~~-~~lyv~GG~~~ 345 (390)
++++ ++||++||. .+++++||+.+++ |+.+..+| .++ .++++++++ ++|||+||...
T Consensus 544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R-----~~~~~~~~~~~~iyv~GG~~~ 618 (695)
T 2zwa_A 544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR-----YGSQIKYITPRKLLIVGGTSP 618 (695)
T ss_dssp EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC-----BSCEEEEEETTEEEEECCBCS
T ss_pred EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc-----ccceEEEeCCCEEEEECCccC
Confidence 7766 899999985 4789999999999 89988764 332 246677888 99999999865
Q ss_pred CC--CCeEEEeeecCCCCCCCCCCceEEec
Q 016421 346 PE--GENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 346 ~~--~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
.. ....++++||+++ ++|+.+.
T Consensus 619 ~~~~~~~~~v~~yd~~t------~~W~~~~ 642 (695)
T 2zwa_A 619 SGLFDRTNSIISLDPLS------ETLTSIP 642 (695)
T ss_dssp SCCCCTTTSEEEEETTT------TEEEECC
T ss_pred CCCCCCCCeEEEEECCC------CeEEEee
Confidence 43 2456799999999 7999664
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-31 Score=267.86 Aligned_cols=236 Identities=15% Similarity=0.175 Sum_probs=189.4
Q ss_pred cccEEEEEeC-----CCeeEEEecCCCceeeCC-C-----CCCCcccCCCCeeEEEe--CCEEEEEccccc----CCeEE
Q 016421 96 VEHWVYLVCD-----PRGWEAFDPMKKKWMALP-K-----IPCDECFNHADKESLAV--GSELLVFGRELF----DFAIW 158 (390)
Q Consensus 96 ~~~~l~~~~~-----~~~~~~~d~~~~~W~~l~-~-----~p~~~~~~~~~~~~~~~--~~~iy~~Gg~~~----~~~~~ 158 (390)
.++.||++|| ..+++.||+.+++|..++ + +|.++. .++++++ ++.||++||... .++++
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~----~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARM----CHTFTTISRNNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCB----SCEEEEETTTTEEEEECCBSSTTCBCCCCE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCcccc----ceEEEEEccCCEEEEEcCCCCCCCccccEE
Confidence 4788999987 367899999999999988 6 444443 3456778 999999999653 46899
Q ss_pred EEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC---CCCCCcCceEEEEC
Q 016421 159 KYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS---MHSPRRLCSGFFMD 234 (390)
Q Consensus 159 ~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~---~~~~r~~~~~~~~~ 234 (390)
+||+.+++|+.++++|.+|..|+++++ +++||++||..... ++++||+.+++|+.+++ +|.+|..|++++++
T Consensus 472 ~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 472 IFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp EEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred EEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence 999999999999999999999999996 99999999987653 89999999999999986 88899999988877
Q ss_pred ---CEEEEEecccCCC-ccCceEEEEeCCCCc------eEEccCCCCCCCCcCCCCCEEEEEC-CEEEEEecC-------
Q 016421 235 ---GKFYVIGGMSSPT-VSLTCGEEFDLETRK------WRKIEGMYPNVNRAAQAPPLVAVVD-NQLYAVEYL------- 296 (390)
Q Consensus 235 ---~~iyv~GG~~~~~-~~~~~v~~yd~~~~~------W~~~~~~~~~~~~~~~~~~~~~~~~-g~l~v~gg~------- 296 (390)
++||++||....+ ...+++++||+.+++ |+.+.++|. .+|..+++++++ ++||++||.
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~----~~R~~~~~~~~~~~~iyv~GG~~~~~~~~ 623 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPL----FQRYGSQIKYITPRKLLIVGGTSPSGLFD 623 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGG----GCCBSCEEEEEETTEEEEECCBCSSCCCC
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCC----CCcccceEEEeCCCEEEEECCccCCCCCC
Confidence 8999999986543 567899999999999 888877542 156677888899 999999983
Q ss_pred -CCeEEEEeCCCCceEEccCCCccc---cCCCcceeEEEEeCC-EEEEEcCCC
Q 016421 297 -TNMVKKYDKLKNTWDVLGRLPVRA---DLSNGWGLAFKACGN-ELLVVGGQR 344 (390)
Q Consensus 297 -~~~v~~yd~~~~~W~~v~~~~~~~---~~~~~~~~~~~~~~~-~lyv~GG~~ 344 (390)
.+++++||+.+++|+.+. +|... ......+++++.+++ +|||+||..
T Consensus 624 ~~~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~ 675 (695)
T 2zwa_A 624 RTNSIISLDPLSETLTSIP-ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGA 675 (695)
T ss_dssp TTTSEEEEETTTTEEEECC-CCHHHHHHSCCCCSSCEEECC---CEEEECCEE
T ss_pred CCCeEEEEECCCCeEEEee-ccccccCCCCccceeeeEEEeCCCEEEEEeCCc
Confidence 578999999999999653 33221 000123456666665 999999954
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-31 Score=267.61 Aligned_cols=260 Identities=16% Similarity=0.202 Sum_probs=197.2
Q ss_pred CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccC---------CeEEEEECCCCcEeecCCCCCC
Q 016421 107 RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFD---------FAIWKYSLVFRSWMKCEGMNHP 176 (390)
Q Consensus 107 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~---------~~~~~yd~~t~~W~~~~~~~~~ 176 (390)
..+.+|||.+++|..++++|... . +.++.. +++||++||.... ..+++||+.+++|+.++.++.+
T Consensus 166 ~~~~~~dp~~~~W~~~~~~P~~~--~---~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~ 240 (656)
T 1k3i_A 166 SSYTAPQPGLGRWGPTIDLPIVP--A---AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK 240 (656)
T ss_dssp SCCCCCCTTSCEEEEEEECSSCC--S---EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS
T ss_pred cccccCCCCCCeeeeeccCCCCc--e---eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC
Confidence 35788999999999988887621 1 223333 8999999986421 3689999999999999888887
Q ss_pred Cccee--ee-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCce
Q 016421 177 RCLFG--SG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTC 252 (390)
Q Consensus 177 r~~~~--~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~ 252 (390)
|..++ ++ ..+++||++||.... ++++||+.+++|+.+++|+.+|..|+++++ +|+||++||........++
T Consensus 241 ~~~~~~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~ 315 (656)
T 1k3i_A 241 HDMFCPGISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKN 315 (656)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCC
T ss_pred CCCccccccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCccccc
Confidence 76654 33 358999999997642 699999999999999999999999999998 9999999995444446788
Q ss_pred EEEEeCCCCceEEcc-----CCCCCCCCc---------------------------------------------------
Q 016421 253 GEEFDLETRKWRKIE-----GMYPNVNRA--------------------------------------------------- 276 (390)
Q Consensus 253 v~~yd~~~~~W~~~~-----~~~~~~~~~--------------------------------------------------- 276 (390)
+++||+.+++|+.++ +++..+...
T Consensus 316 ~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~ 395 (656)
T 1k3i_A 316 GEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVA 395 (656)
T ss_dssp EEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEEC
T ss_pred ceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccC
Confidence 999999999999973 333221000
Q ss_pred -CCCCCEEEE---ECCEEEEEecC--------CC---eEEEEeCCCCceEEcc--CCCccccCCCcceeEEEEe-CCEEE
Q 016421 277 -AQAPPLVAV---VDNQLYAVEYL--------TN---MVKKYDKLKNTWDVLG--RLPVRADLSNGWGLAFKAC-GNELL 338 (390)
Q Consensus 277 -~~~~~~~~~---~~g~l~v~gg~--------~~---~v~~yd~~~~~W~~v~--~~~~~~~~~~~~~~~~~~~-~~~ly 338 (390)
.+..+.++. .+++||++||. .+ .+++||+++++|..+. .||.++.. ++++++ +++||
T Consensus 396 ~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~-----~~~~~l~~g~i~ 470 (656)
T 1k3i_A 396 PDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF-----HTSVVLPDGSTF 470 (656)
T ss_dssp CCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBS-----CEEEECTTSCEE
T ss_pred CCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCccc-----CCeEECCCCCEE
Confidence 011222332 48999999984 23 7899999999999986 78776542 455566 99999
Q ss_pred EEcCCCCC-----CCCeEEEeeecCCCCCCCCCCceEEecccCccCeEEeeeee
Q 016421 339 VVGGQRGP-----EGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAV 387 (390)
Q Consensus 339 v~GG~~~~-----~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~ 387 (390)
|+||.... .....++++||+++ ++|+.++++|..|..++++.+
T Consensus 471 v~GG~~~~~~~~~~~~~~~v~~ydp~t------~~W~~~~~~~~~R~~hs~a~l 518 (656)
T 1k3i_A 471 ITGGQRRGIPFEDSTPVFTPEIYVPEQ------DTFYKQNPNSIVRVYHSISLL 518 (656)
T ss_dssp EECCBSBCCTTCCCSBCCCCEEEEGGG------TEEEECCCCSSCCCTTEEEEE
T ss_pred EECCcccCcCcCCCCcccceEEEcCCC------CceeecCCCCCccccccHhhc
Confidence 99997532 23456799999998 799999999776666655443
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-29 Score=248.54 Aligned_cols=251 Identities=16% Similarity=0.146 Sum_probs=189.7
Q ss_pred ccEEEEEeCC------------CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCC
Q 016421 97 EHWVYLVCDP------------RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVF 164 (390)
Q Consensus 97 ~~~l~~~~~~------------~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t 164 (390)
+..||++|+. ..++.||+.+++|..++.+|.++..+ +...++..+++||++||.... ++++||+.+
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~-~~~~~~~~~g~lyv~GG~~~~-~v~~yd~~t 274 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF-CPGISMDGNGQIVVTGGNDAK-KTSLYDSSS 274 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS-SCEEEECTTSCEEEECSSSTT-CEEEEEGGG
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCc-cccccCCCCCCEEEeCCCCCC-ceEEecCcC
Confidence 6789999741 26789999999999998887765432 222344568999999996543 899999999
Q ss_pred CcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC-----CCCCCC-------------
Q 016421 165 RSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP-----SMHSPR------------- 225 (390)
Q Consensus 165 ~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-----~~~~~r------------- 225 (390)
++|..+++|+.+|..|+++++ +++||++||........+++++||+.+++|+.++ +|+..+
T Consensus 275 ~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv 354 (656)
T 1k3i_A 275 DSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWL 354 (656)
T ss_dssp TEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCE
T ss_pred CceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEE
Confidence 999999999999999999998 9999999995433346788999999999999863 333321
Q ss_pred --------------------------------------------cCceEEE---ECCEEEEEecccC--CCccCc---eE
Q 016421 226 --------------------------------------------RLCSGFF---MDGKFYVIGGMSS--PTVSLT---CG 253 (390)
Q Consensus 226 --------------------------------------------~~~~~~~---~~~~iyv~GG~~~--~~~~~~---~v 253 (390)
..++++. .+++||++||... ....++ .+
T Consensus 355 ~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v 434 (656)
T 1k3i_A 355 FGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHII 434 (656)
T ss_dssp EECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEE
T ss_pred EECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEE
Confidence 1223332 3899999999753 112234 78
Q ss_pred EEEeCCCCceEEcc--CCCCCCCCcCCCCCEEEEE-CCEEEEEecC-----------CCeEEEEeCCCCceEEccCCCcc
Q 016421 254 EEFDLETRKWRKIE--GMYPNVNRAAQAPPLVAVV-DNQLYAVEYL-----------TNMVKKYDKLKNTWDVLGRLPVR 319 (390)
Q Consensus 254 ~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~-~g~l~v~gg~-----------~~~v~~yd~~~~~W~~v~~~~~~ 319 (390)
++||+.+++|..+. .||. +|..+.++++ +|+||++||. ...+++||+++++|+.++.++.+
T Consensus 435 ~~yd~~~~~W~~~~~~~mp~-----~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~ 509 (656)
T 1k3i_A 435 TLGEPGTSPNTVFASNGLYF-----ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV 509 (656)
T ss_dssp ECCSTTSCCEEEECTTCCSS-----CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSC
T ss_pred EcCCCCCCCeeEEccCCCCC-----CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCc
Confidence 89999999999986 7777 4555667777 9999999984 36799999999999999998877
Q ss_pred ccCCCcceeEEEEe--CCEEEEEcCCCCCC--CCeEEEeeecCC
Q 016421 320 ADLSNGWGLAFKAC--GNELLVVGGQRGPE--GENVVLNSWCPK 359 (390)
Q Consensus 320 ~~~~~~~~~~~~~~--~~~lyv~GG~~~~~--~~~~~i~~y~~~ 359 (390)
+.. ++++++ +++||++||..... ....++++|.|.
T Consensus 510 R~~-----hs~a~ll~dg~v~v~GG~~~~~~~~~~~~~e~~~Pp 548 (656)
T 1k3i_A 510 RVY-----HSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPN 548 (656)
T ss_dssp CCT-----TEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECG
T ss_pred ccc-----ccHhhcCCCcEEEecCCCCCCCCCCCeeEEEEEeCh
Confidence 653 344455 99999999953211 122346677764
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.11 E-value=7.6e-08 Score=91.21 Aligned_cols=274 Identities=13% Similarity=0.138 Sum_probs=151.1
Q ss_pred CCCCCCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCchhhhhh------------------------------
Q 016421 43 SDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQ------------------------------ 92 (390)
Q Consensus 43 ~~~~~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~~~r~~------------------------------ 92 (390)
....+..||+|++..||++|+..+|.++..|||+|+.++.++.+.+....
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~ 94 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYI 94 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHh
Confidence 34578899999999999999999999999999999998876543321000
Q ss_pred --------------------cCccc----------cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeC
Q 016421 93 --------------------LGIVE----------HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVG 142 (390)
Q Consensus 93 --------------------~~~~~----------~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~ 142 (390)
.++.. ..++..+....+..+|..+.+-.. .+.... ..-..+...
T Consensus 95 ~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~--~~~~h~----~~v~~~~~~ 168 (445)
T 2ovr_B 95 RQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLR--TLVGHT----GGVWSSQMR 168 (445)
T ss_dssp HHHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEE--ECCCCS----SCEEEEEEE
T ss_pred hhhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEE--EEcCCC----CCEEEEEec
Confidence 00000 111111224456667766543221 111111 111223333
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCC
Q 016421 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH 222 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 222 (390)
+.+++.|+. +..+.+||..+++-... +............++..++.|+.+ ..+.+||..+++-... +.
T Consensus 169 ~~~l~s~~~--dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~--~~ 236 (445)
T 2ovr_B 169 DNIIISGST--DRTLKVWNAETGECIHT--LYGHTSTVRCMHLHEKRVVSGSRD------ATLRVWDIETGQCLHV--LM 236 (445)
T ss_dssp TTEEEEEET--TSCEEEEETTTTEEEEE--ECCCSSCEEEEEEETTEEEEEETT------SEEEEEESSSCCEEEE--EE
T ss_pred CCEEEEEeC--CCeEEEEECCcCcEEEE--ECCCCCcEEEEEecCCEEEEEeCC------CEEEEEECCCCcEEEE--Ec
Confidence 445555543 45788999888754322 111122222233345556666643 3588899887764321 11
Q ss_pred CCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEE
Q 016421 223 SPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKK 302 (390)
Q Consensus 223 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~ 302 (390)
........+..++..++.|+.++ .+..||+.+.+-.. .+... .........++..++.|+..+.+.+
T Consensus 237 ~~~~~v~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~--~~~~~-----~~~v~~~~~~~~~l~~~~~d~~i~i 303 (445)
T 2ovr_B 237 GHVAAVRCVQYDGRRVVSGAYDF------MVKVWDPETETCLH--TLQGH-----TNRVYSLQFDGIHVVSGSLDTSIRV 303 (445)
T ss_dssp CCSSCEEEEEECSSCEEEEETTS------CEEEEEGGGTEEEE--EECCC-----SSCEEEEEECSSEEEEEETTSCEEE
T ss_pred CCcccEEEEEECCCEEEEEcCCC------EEEEEECCCCcEeE--EecCC-----CCceEEEEECCCEEEEEeCCCeEEE
Confidence 12222334455787777776543 46778887764322 11111 0111233447888888888889999
Q ss_pred EeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 303 YDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 303 yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
||..+.+-... +..... . ...+..++.+++.|+.++ .|.+||..+
T Consensus 304 ~d~~~~~~~~~--~~~~~~----~-v~~~~~~~~~l~~~~~dg------~i~vwd~~~ 348 (445)
T 2ovr_B 304 WDVETGNCIHT--LTGHQS----L-TSGMELKDNILVSGNADS------TVKIWDIKT 348 (445)
T ss_dssp EETTTCCEEEE--ECCCCS----C-EEEEEEETTEEEEEETTS------CEEEEETTT
T ss_pred EECCCCCEEEE--EcCCcc----c-EEEEEEeCCEEEEEeCCC------eEEEEECCC
Confidence 99988753321 111111 1 223344566667776553 477899876
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-08 Score=94.51 Aligned_cols=275 Identities=11% Similarity=0.111 Sum_probs=152.3
Q ss_pred CCCCCCChHH----HHHHHhhhccccchhhhHhhcHHHHHHhhcCCchhhhh--h-------------------------
Q 016421 44 DSLLPGLVDD----VALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRK--Q------------------------- 92 (390)
Q Consensus 44 ~~~~~~LP~d----l~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~~~r~--~------------------------- 92 (390)
..++..||+| |+..||++|+..+|.++..|||+|+.++.++.+.+... .
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKP 87 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC----
T ss_pred cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCC
Confidence 4567789999 99999999999999999999999999988765332100 0
Q ss_pred ------------------------------cC------------cc---------ccEEEEEeCCCeeEEEecCCCceee
Q 016421 93 ------------------------------LG------------IV---------EHWVYLVCDPRGWEAFDPMKKKWMA 121 (390)
Q Consensus 93 ------------------------------~~------------~~---------~~~l~~~~~~~~~~~~d~~~~~W~~ 121 (390)
.+ .. ...+...+....+..+|..+.+-..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~ 167 (435)
T 1p22_A 88 PDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR 167 (435)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEE
T ss_pred CCCCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEE
Confidence 00 00 0111122224456667765543322
Q ss_pred CCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCc
Q 016421 122 LPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHV 201 (390)
Q Consensus 122 l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~ 201 (390)
. +.. +...-..+..++.+++.|+. +..+.+||..+++-... +...........+++..++.|+.++
T Consensus 168 ~--~~~----h~~~v~~l~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~s~s~dg---- 233 (435)
T 1p22_A 168 I--LTG----HTGSVLCLQYDERVIITGSS--DSTVRVWDVNTGEMLNT--LIHHCEAVLHLRFNNGMMVTCSKDR---- 233 (435)
T ss_dssp E--ECC----CSSCEEEEECCSSEEEEEET--TSCEEEEESSSCCEEEE--ECCCCSCEEEEECCTTEEEEEETTS----
T ss_pred E--EcC----CCCcEEEEEECCCEEEEEcC--CCeEEEEECCCCcEEEE--EcCCCCcEEEEEEcCCEEEEeeCCC----
Confidence 1 111 11111233446666666653 45788899887764322 1112222233334555666666543
Q ss_pred cceEEEEECCCCcEEEc-CCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCC
Q 016421 202 LKSAELYDSTTGRWEML-PSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAP 280 (390)
Q Consensus 202 ~~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 280 (390)
.+.+||..++.-... ..+.........+..++...+.|+.+ ..+..||+.+.+-... +... . ..
T Consensus 234 --~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~--~~~~----~-~~ 298 (435)
T 1p22_A 234 --SIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD------RTIKVWNTSTCEFVRT--LNGH----K-RG 298 (435)
T ss_dssp --CEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETT------SEEEEEETTTCCEEEE--EECC----S-SC
T ss_pred --cEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCC------CeEEEEECCcCcEEEE--EcCC----C-Cc
Confidence 478899877652211 11111222233344466666666653 3577899987654321 1110 0 11
Q ss_pred CEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 281 PLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 281 ~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
......++.+++.|+..+.|.+||..+.+-.. .+..... ....+..++..++.|+.++ .|.+||..+
T Consensus 299 v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~--~~~~h~~-----~v~~~~~~~~~l~sg~~dg------~i~vwd~~~ 365 (435)
T 1p22_A 299 IACLQYRDRLVVSGSSDNTIRLWDIECGACLR--VLEGHEE-----LVRCIRFDNKRIVSGAYDG------KIKVWDLVA 365 (435)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEEE--EECCCSS-----CEEEEECCSSEEEEEETTS------CEEEEEHHH
T ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCCCCEEE--EEeCCcC-----cEEEEEecCCEEEEEeCCC------cEEEEECCC
Confidence 12334467777888888899999998765322 1211111 1234455788888888664 377888754
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-07 Score=89.51 Aligned_cols=277 Identities=12% Similarity=0.136 Sum_probs=144.4
Q ss_pred CCCCCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhc-CCchhhhh-------------------------------
Q 016421 44 DSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKS-GYLYGLRK------------------------------- 91 (390)
Q Consensus 44 ~~~~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s-~~~~~~r~------------------------------- 91 (390)
...+..||+|++..||++||..+|.++..|||+|+.++.+ +.+.+...
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRL 91 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCTTSCHHHHH
T ss_pred cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCCCcccchhh
Confidence 3467789999999999999999999999999999999987 43211000
Q ss_pred -------------------------hcCccc----------cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCe
Q 016421 92 -------------------------QLGIVE----------HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADK 136 (390)
Q Consensus 92 -------------------------~~~~~~----------~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~ 136 (390)
..++.. ..++..+....+..+|..+.+-.. .+... ...-
T Consensus 92 ~~~~~~~~~~~~~w~~~~~~~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~--~~~~h----~~~V 165 (464)
T 3v7d_B 92 RLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLL--QLSGH----DGGV 165 (464)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEE--EECCC----SSCE
T ss_pred HHHHHHhhhhHhhhcCCCcCcceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEE--EEeCC----CcCE
Confidence 000000 111111224456667765543221 11111 1111
Q ss_pred eEEE-eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee---CCEEEEEeccCCCCCccceEEEEECCC
Q 016421 137 ESLA-VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL---GSIAIIAGGSDKNGHVLKSAELYDSTT 212 (390)
Q Consensus 137 ~~~~-~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t 212 (390)
..+. ..+.+++.|+. +..+.+||..+++-...-..... .-.++... ++..++.|+.++ .+.+||..+
T Consensus 166 ~~l~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~l~s~s~d~------~i~vwd~~~ 236 (464)
T 3v7d_B 166 WALKYAHGGILVSGST--DRTVRVWDIKKGCCTHVFEGHNS-TVRCLDIVEYKNIKYIVTGSRDN------TLHVWKLPK 236 (464)
T ss_dssp EEEEECSTTEEEEEET--TSCEEEEETTTTEEEEEECCCSS-CEEEEEEEESSSCEEEEEEETTS------CEEEEECCC
T ss_pred EEEEEcCCCEEEEEeC--CCCEEEEECCCCcEEEEECCCCC-ccEEEEEecCCCCCEEEEEcCCC------cEEEeeCCC
Confidence 1222 22335555543 45788999988764322111111 11122222 457777776543 377888776
Q ss_pred CcEEEcC---------------------CCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCC
Q 016421 213 GRWEMLP---------------------SMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYP 271 (390)
Q Consensus 213 ~~W~~~~---------------------~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 271 (390)
..-.... .+.........+..++.+.+.|+.++ .+..||+.+.+-...- ..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~--~~ 308 (464)
T 3v7d_B 237 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN------TLIVWDVAQMKCLYIL--SG 308 (464)
T ss_dssp CCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTS------CEEEEETTTTEEEEEE--CC
T ss_pred CcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCC------eEEEEECCCCcEEEEe--cC
Confidence 5422110 00001111122234555666665442 4778998876543221 11
Q ss_pred CCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCe
Q 016421 272 NVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGEN 350 (390)
Q Consensus 272 ~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~ 350 (390)
. ......++. .++..++.|+..+.+.+||..+.+-.. .+..... ....+..++..++.|+.++
T Consensus 309 ~----~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~--~~~~h~~-----~v~~~~~~~~~l~s~s~dg----- 372 (464)
T 3v7d_B 309 H----TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY--TLQGHTA-----LVGLLRLSDKFLVSAAADG----- 372 (464)
T ss_dssp C----SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE--EECCCSS-----CEEEEEECSSEEEEEETTS-----
T ss_pred C----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE--EEeCCCC-----cEEEEEEcCCEEEEEeCCC-----
Confidence 0 001112222 356677777777889999998765322 2211111 1233445667777777654
Q ss_pred EEEeeecCCC
Q 016421 351 VVLNSWCPKS 360 (390)
Q Consensus 351 ~~i~~y~~~~ 360 (390)
.|.+||+.+
T Consensus 373 -~v~vwd~~~ 381 (464)
T 3v7d_B 373 -SIRGWDAND 381 (464)
T ss_dssp -EEEEEETTT
T ss_pred -cEEEEECCC
Confidence 577888876
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E | Back alignment and structure |
|---|
Probab=98.77 E-value=5.2e-09 Score=67.44 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=39.0
Q ss_pred CCCCCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCchh
Q 016421 44 DSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYG 88 (390)
Q Consensus 44 ~~~~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~~ 88 (390)
...|..||+|++.+||++||..++.+++.|||+|+.++.++.+.+
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~ 50 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 456899999999999999999999999999999999999877653
|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A | Back alignment and structure |
|---|
Probab=98.45 E-value=6.9e-08 Score=84.90 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=43.1
Q ss_pred CCCCCCChHHHHHHHhhhccccchh-hhHhhcHHHHHHhhcCCchhhh
Q 016421 44 DSLLPGLVDDVALNCLAFACTSDYA-SLLFINKRFHKLIKSGYLYGLR 90 (390)
Q Consensus 44 ~~~~~~LP~dl~~~iL~rlp~~~l~-~~~~V~k~w~~l~~s~~~~~~r 90 (390)
...+..||+||+++||++||.++|. ++++|||+|+.++.++.|...+
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~ 95 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK 95 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHH
Confidence 4578899999999999999999999 9999999999999999887654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00056 Score=61.77 Aligned_cols=220 Identities=9% Similarity=-0.118 Sum_probs=126.6
Q ss_pred CCeeEEEecCCCceeeCCCCC-CCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcE-eecCCCCCCCcceeee
Q 016421 106 PRGWEAFDPMKKKWMALPKIP-CDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSW-MKCEGMNHPRCLFGSG 183 (390)
Q Consensus 106 ~~~~~~~d~~~~~W~~l~~~p-~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W-~~~~~~~~~r~~~~~~ 183 (390)
...+..+|+.+.+...--... ...........+...++++|+... ..+.+.++|+.+.+- ..++....+ ..++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~--~~~~v~viD~~t~~~~~~i~~~~~p---~~i~ 90 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVN--NSHVIFAIDINTFKEVGRITGFTSP---RYIH 90 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEG--GGTEEEEEETTTCCEEEEEECCSSE---EEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEc--CCCEEEEEECcccEEEEEcCCCCCC---cEEE
Confidence 357788999988765321000 000000011234456889998765 346899999998876 444333222 2333
Q ss_pred e-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCC----CcCceEEEECCEEEEEecccCCCccCceEEEEeC
Q 016421 184 S-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSP----RRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDL 258 (390)
Q Consensus 184 ~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~----r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 258 (390)
. -++++|+.... ...+.++|+.+++-...-+.... ......+..++++|+..-. ....+.++|+
T Consensus 91 ~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~-----~~~~v~viD~ 159 (328)
T 3dsm_A 91 FLSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS-----YQNRILKIDT 159 (328)
T ss_dssp EEETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT-----TCCEEEEEET
T ss_pred EeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC-----CCCEEEEEEC
Confidence 3 57899998642 35689999999875421111110 0223444578999998420 1346889999
Q ss_pred CCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC----------CCeEEEEeCCCCceEEccCCCccccCCCccee
Q 016421 259 ETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL----------TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGL 328 (390)
Q Consensus 259 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~----------~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~ 328 (390)
.+++....-..... + ......-+|++|+.... .+.|+++|+++++....-.++..... .
T Consensus 160 ~t~~~~~~i~~g~~----p--~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p-----~ 228 (328)
T 3dsm_A 160 ETDKVVDELTIGIQ----P--TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWP-----S 228 (328)
T ss_dssp TTTEEEEEEECSSC----B--CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCC-----E
T ss_pred CCCeEEEEEEcCCC----c--cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCc-----e
Confidence 99876532222111 1 01133346899888643 27899999999876543233322111 2
Q ss_pred EEEEe--CCEEEEEcCCCCCCCCeEEEeeecCCCC
Q 016421 329 AFKAC--GNELLVVGGQRGPEGENVVLNSWCPKSG 361 (390)
Q Consensus 329 ~~~~~--~~~lyv~GG~~~~~~~~~~i~~y~~~~~ 361 (390)
.++.. ++.||+..+ .|++||++++
T Consensus 229 ~la~~~d~~~lyv~~~---------~v~~~d~~t~ 254 (328)
T 3dsm_A 229 EVQLNGTRDTLYWINN---------DIWRMPVEAD 254 (328)
T ss_dssp EEEECTTSCEEEEESS---------SEEEEETTCS
T ss_pred eEEEecCCCEEEEEcc---------EEEEEECCCC
Confidence 23333 678888765 3778888773
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00017 Score=65.25 Aligned_cols=236 Identities=12% Similarity=0.012 Sum_probs=131.7
Q ss_pred cccEEEEEeC-CCeeEEEecCCCce-eeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEee-cCC
Q 016421 96 VEHWVYLVCD-PRGWEAFDPMKKKW-MALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMK-CEG 172 (390)
Q Consensus 96 ~~~~l~~~~~-~~~~~~~d~~~~~W-~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~-~~~ 172 (390)
....+|+... ...+..+|+.+.+- ..++....+. ...+..++.+|+... ....+.++|+.+++-.. ++.
T Consensus 52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~------~i~~~~~g~lyv~~~--~~~~v~~iD~~t~~~~~~i~~ 123 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPR------YIHFLSDEKAYVTQI--WDYRIFIINPKTYEITGYIEC 123 (328)
T ss_dssp ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEE------EEEEEETTEEEEEEB--SCSEEEEEETTTTEEEEEEEC
T ss_pred ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCc------EEEEeCCCeEEEEEC--CCCeEEEEECCCCeEEEEEEc
Confidence 3567777754 46788899987765 3343222211 112335779998763 24689999999987542 221
Q ss_pred CCC---CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE-ECCEEEEEecccCCCc
Q 016421 173 MNH---PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF-MDGKFYVIGGMSSPTV 248 (390)
Q Consensus 173 ~~~---~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~ 248 (390)
... ......++..++++|+..-. ....+.++|+.+++....-+.. ......+. -+|++|+.........
T Consensus 124 g~~~~~~~~p~~i~~~~~~lyv~~~~-----~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~dG~l~v~~~~~~~~~ 196 (328)
T 3dsm_A 124 PDMDMESGSTEQMVQYGKYVYVNCWS-----YQNRILKIDTETDKVVDELTIG--IQPTSLVMDKYNKMWTITDGGYEGS 196 (328)
T ss_dssp TTCCTTTCBCCCEEEETTEEEEEECT-----TCCEEEEEETTTTEEEEEEECS--SCBCCCEECTTSEEEEEBCCBCTTC
T ss_pred CCccccCCCcceEEEECCEEEEEcCC-----CCCEEEEEECCCCeEEEEEEcC--CCccceEEcCCCCEEEEECCCccCC
Confidence 110 00222444478999998521 1356999999998764421111 11122222 3689888753321111
Q ss_pred c----CceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccC
Q 016421 249 S----LTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADL 322 (390)
Q Consensus 249 ~----~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~ 322 (390)
. ...+.++|+.+.+....-.++.. .....++.. ++.+|+..+ .+++||+++++.....-.+.....
T Consensus 197 ~~~~~~~~v~~id~~t~~v~~~~~~~~g-----~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~~~~~~~~~ 268 (328)
T 3dsm_A 197 PYGYEAPSLYRIDAETFTVEKQFKFKLG-----DWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVRPFLEFRDTK 268 (328)
T ss_dssp SSCBCCCEEEEEETTTTEEEEEEECCTT-----CCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSSCSBCCCSSC
T ss_pred ccccCCceEEEEECCCCeEEEEEecCCC-----CCceeEEEecCCCEEEEEcc---EEEEEECCCCceeeeeeecCCCCc
Confidence 1 36799999999876543223221 011134444 567888765 899999988775322212211000
Q ss_pred CCcceeEEEE--eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 323 SNGWGLAFKA--CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 323 ~~~~~~~~~~--~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
. .+++. .+++||+....+- .....|.+||++.
T Consensus 269 ---p-~gi~vdp~~g~lyva~~~~y--~~~~~V~v~d~~g 302 (328)
T 3dsm_A 269 ---Y-YGLTVNPNNGEVYVADAIDY--QQQGIVYRYSPQG 302 (328)
T ss_dssp ---E-EEEEECTTTCCEEEEECTTS--SSEEEEEEECTTC
T ss_pred ---e-EEEEEcCCCCeEEEEccccc--ccCCEEEEECCCC
Confidence 1 22333 3789999973110 1235799999974
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.27 E-value=0.0025 Score=58.35 Aligned_cols=222 Identities=14% Similarity=0.114 Sum_probs=130.5
Q ss_pred ccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--EeecCC
Q 016421 97 EHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEG 172 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~ 172 (390)
+..+|+......+.++|+.+. .|..-..-.. ....+..++.+|+... ...++.+|+.+++ |+.-..
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~-------~~~p~~~~~~v~v~~~---~g~l~~~d~~tG~~~W~~~~~ 172 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA-------LSRPVVSDGLVLIHTS---NGQLQALNEADGAVKWTVNLD 172 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCC-------CSCCEEETTEEEEECT---TSEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce-------EcCCEEECCEEEEEcC---CCeEEEEECCCCcEEEEEeCC
Confidence 567777766678999999866 4754221111 0112445778877543 3478999998875 765433
Q ss_pred CCC--CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCCCC--------cCceEEEECCEEEEE
Q 016421 173 MNH--PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHSPR--------RLCSGFFMDGKFYVI 240 (390)
Q Consensus 173 ~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r--------~~~~~~~~~~~iyv~ 240 (390)
.+. .+.....+..++.+|+. .. ...+..||+.+++ |+.-...+... .....+..++.+|+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~v~~g-~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~ 245 (376)
T 3q7m_A 173 MPSLSLRGESAPTTAFGAAVVG-GD------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFAL 245 (376)
T ss_dssp C-----CCCCCCEEETTEEEEC-CT------TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEE
T ss_pred CCceeecCCCCcEEECCEEEEE-cC------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEE
Confidence 221 11222334457777763 22 2358899998775 76643222111 122334568898886
Q ss_pred ecccCCCccCceEEEEeCCCC--ceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc--eEEccCC
Q 016421 241 GGMSSPTVSLTCGEEFDLETR--KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT--WDVLGRL 316 (390)
Q Consensus 241 GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~--W~~v~~~ 316 (390)
+. ...+..+|+.++ .|+.-.. . ....+..++.+|+... .+.+++||+.+++ |+.-. +
T Consensus 246 ~~-------~g~l~~~d~~tG~~~w~~~~~--~--------~~~~~~~~~~l~~~~~-~g~l~~~d~~tG~~~w~~~~-~ 306 (376)
T 3q7m_A 246 AY-------NGNLTALDLRSGQIMWKRELG--S--------VNDFIVDGNRIYLVDQ-NDRVMALTIDGGVTLWTQSD-L 306 (376)
T ss_dssp CT-------TSCEEEEETTTCCEEEEECCC--C--------EEEEEEETTEEEEEET-TCCEEEEETTTCCEEEEECT-T
T ss_pred ec-------CcEEEEEECCCCcEEeeccCC--C--------CCCceEECCEEEEEcC-CCeEEEEECCCCcEEEeecc-c
Confidence 42 234788999876 4764321 1 1135667889988764 4579999998875 87631 1
Q ss_pred CccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEE
Q 016421 317 PVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKV 371 (390)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~ 371 (390)
+.... ...+..++.||+..... .++++|+.+ ++..|+.
T Consensus 307 ~~~~~------~~~~~~~~~l~v~~~~g-------~l~~~d~~t----G~~~~~~ 344 (376)
T 3q7m_A 307 LHRLL------TSPVLYNGNLVVGDSEG-------YLHWINVED----GRFVAQQ 344 (376)
T ss_dssp TTSCC------CCCEEETTEEEEECTTS-------EEEEEETTT----CCEEEEE
T ss_pred CCCcc------cCCEEECCEEEEEeCCC-------eEEEEECCC----CcEEEEE
Confidence 11111 12345688988875421 588999988 4556864
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00042 Score=59.27 Aligned_cols=188 Identities=19% Similarity=0.118 Sum_probs=117.3
Q ss_pred EEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016421 138 SLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 138 ~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
....++.+|...|....+.+.++|+.+++-...-+++......+++..+++||++... .+.+++||+.+.+-..
T Consensus 26 L~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~------~~~v~v~D~~tl~~~~ 99 (243)
T 3mbr_X 26 LFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR------NHEGFVYDLATLTPRA 99 (243)
T ss_dssp EEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEEEEETTTTEEEE
T ss_pred EEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee------CCEEEEEECCcCcEEE
Confidence 3445789999888776778999999999876555555555566778889999998543 4569999998876433
Q ss_pred cCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceE-EccCCCCCCCCcCCCCCEEEEECCEEEEEecC
Q 016421 218 LPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR-KIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL 296 (390)
Q Consensus 218 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~ 296 (390)
.++.+..+.+.+.-++++|+.-| ...+..+|+.+.+-. .+..-..+.. -.....+...+|+||+---.
T Consensus 100 --ti~~~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~~~g~~--~~~lNeLe~~~G~lyanvw~ 168 (243)
T 3mbr_X 100 --RFRYPGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVTAGGRP--LDNLNELEWVNGELLANVWL 168 (243)
T ss_dssp --EEECSSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEECEETTEE--CCCEEEEEEETTEEEEEETT
T ss_pred --EEeCCCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEccCCcc--cccceeeEEeCCEEEEEECC
Confidence 22223334455544667888633 346888999997643 2221100000 01111345679999977767
Q ss_pred CCeEEEEeCCCCc---eEEccCCCcccc----CCCc--ceeEEEEeCCEEEEEcC
Q 016421 297 TNMVKKYDKLKNT---WDVLGRLPVRAD----LSNG--WGLAFKACGNELLVVGG 342 (390)
Q Consensus 297 ~~~v~~yd~~~~~---W~~v~~~~~~~~----~~~~--~~~~~~~~~~~lyv~GG 342 (390)
.+.|.+-|+++++ |-.++.+..... .... -|.|...-+++|||.|-
T Consensus 169 s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 169 TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 8899999999986 555554422110 0000 12222223678998886
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0043 Score=56.83 Aligned_cols=235 Identities=13% Similarity=0.104 Sum_probs=133.5
Q ss_pred cccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCC---cccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--Ee
Q 016421 96 VEHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCD---ECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--WM 168 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~---~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~ 168 (390)
.+..+|+......+.+||+.+. .|..-...... .............++.||+... ...++.+|+.+++ |+
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE---KAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET---TSEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC---CCEEEEEECCCCCEEEE
Confidence 4678888766678999999755 47543211100 0001111223455788888653 3578999998875 75
Q ss_pred ecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCC--CCcCceEEEECCEEEEEeccc
Q 016421 169 KCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHS--PRRLCSGFFMDGKFYVIGGMS 244 (390)
Q Consensus 169 ~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~ 244 (390)
.-.. .. .....+..++.+|+... ...+..||+.+++ |+.-...+. .+...+.+..++.||+. ..
T Consensus 129 ~~~~--~~-~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g-~~- 196 (376)
T 3q7m_A 129 TKVA--GE-ALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVG-GD- 196 (376)
T ss_dssp EECS--SC-CCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEEC-CT-
T ss_pred EeCC--Cc-eEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEE-cC-
Confidence 4322 11 11223445788887532 2358999998886 876432221 12223344568887773 21
Q ss_pred CCCccCceEEEEeCCCCc--eEEccCCCCCCC---CcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCC--ceEEccCCC
Q 016421 245 SPTVSLTCGEEFDLETRK--WRKIEGMYPNVN---RAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKN--TWDVLGRLP 317 (390)
Q Consensus 245 ~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~---~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~--~W~~v~~~~ 317 (390)
...+..||+.+++ |+.-...+.... .........+..++.+|+.+ ..+.+.++|+.++ .|+.-. +
T Consensus 197 -----~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~-~~g~l~~~d~~tG~~~w~~~~--~ 268 (376)
T 3q7m_A 197 -----NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA-YNGNLTALDLRSGQIMWKREL--G 268 (376)
T ss_dssp -----TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEEC-TTSCEEEEETTTCCEEEEECC--C
T ss_pred -----CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEe-cCcEEEEEECCCCcEEeeccC--C
Confidence 2357889998764 765433221100 00001112345688888875 3567999999877 477532 1
Q ss_pred ccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEe
Q 016421 318 VRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVL 372 (390)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~ 372 (390)
. ....+..++.||+..... .++++|+.+ +...|+.-
T Consensus 269 ~--------~~~~~~~~~~l~~~~~~g-------~l~~~d~~t----G~~~w~~~ 304 (376)
T 3q7m_A 269 S--------VNDFIVDGNRIYLVDQND-------RVMALTIDG----GVTLWTQS 304 (376)
T ss_dssp C--------EEEEEEETTEEEEEETTC-------CEEEEETTT----CCEEEEEC
T ss_pred C--------CCCceEECCEEEEEcCCC-------eEEEEECCC----CcEEEeec
Confidence 1 123456789999987522 388999988 45568764
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0011 Score=56.54 Aligned_cols=164 Identities=18% Similarity=0.029 Sum_probs=105.6
Q ss_pred eeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCC
Q 016421 181 GSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLET 260 (390)
Q Consensus 181 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~ 260 (390)
+....++.+|+..|..+ .+.+.++|+.+++=..--+++....+.+.+..+++||++... .+.+++||+.+
T Consensus 25 GL~~~~~~LyestG~~g----~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~------~~~v~v~D~~t 94 (243)
T 3mbr_X 25 GLFYLRGHLYESTGETG----RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR------NHEGFVYDLAT 94 (243)
T ss_dssp EEEEETTEEEEEECCTT----SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEEEEETTT
T ss_pred cEEEECCEEEEECCCCC----CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee------CCEEEEEECCc
Confidence 66777899999988754 356899999999865544555554555667789999998543 35689999988
Q ss_pred CceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEE-cc--CCCccccCCCcceeEEEEeCCEE
Q 016421 261 RKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDV-LG--RLPVRADLSNGWGLAFKACGNEL 337 (390)
Q Consensus 261 ~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~-v~--~~~~~~~~~~~~~~~~~~~~~~l 337 (390)
.+-.. .++.. ..+.+++.-+++||+-.| .+.+..+|+++.+-.. |. .-+.+.. .-..+...+|+|
T Consensus 95 l~~~~--ti~~~-----~~Gwglt~dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g~~~~----~lNeLe~~~G~l 162 (243)
T 3mbr_X 95 LTPRA--RFRYP-----GEGWALTSDDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGGRPLD----NLNELEWVNGEL 162 (243)
T ss_dssp TEEEE--EEECS-----SCCCEEEECSSCEEEECS-SSEEEEECTTTCCEEEEEECEETTEECC----CEEEEEEETTEE
T ss_pred CcEEE--EEeCC-----CCceEEeeCCCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCCcccc----cceeeEEeCCEE
Confidence 65432 22221 123356666778999887 7889999999976432 22 1111111 012233458999
Q ss_pred EEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016421 338 LVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 338 yv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
|+---.. ++|.+.||.++ ....|-.++.+
T Consensus 163 yanvw~s------~~I~vIDp~tG---~V~~~idl~~l 191 (243)
T 3mbr_X 163 LANVWLT------SRIARIDPASG---KVVAWIDLQAL 191 (243)
T ss_dssp EEEETTT------TEEEEECTTTC---BEEEEEECGGG
T ss_pred EEEECCC------CeEEEEECCCC---CEEEEEECCcC
Confidence 9665432 26889999884 23345555543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0013 Score=56.80 Aligned_cols=186 Identities=12% Similarity=-0.046 Sum_probs=112.7
Q ss_pred EeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 140 AVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 140 ~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
..++.+|+..|....+.+.++|+.+++-...-+++......+++..+++||+.... .+.+++||+.+.+-..
T Consensus 50 ~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~------~~~v~v~D~~t~~~~~-- 121 (262)
T 3nol_A 50 YRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK------NGLGFVWNIRNLRQVR-- 121 (262)
T ss_dssp EETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEEEEETTTCCEEE--
T ss_pred EECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee------CCEEEEEECccCcEEE--
Confidence 34789999888766678999999999865444454444445677889999999542 3569999999877533
Q ss_pred CCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceE-EccCCCCCCCCcCCCCCEEEEECCEEEEEecCCC
Q 016421 220 SMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR-KIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTN 298 (390)
Q Consensus 220 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~ 298 (390)
.++.+..+.+.+.-++++|+.-| .+.+..+|+.+.+-. .+........ ......+...+|+||+---..+
T Consensus 122 ti~~~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~~~g~~--~~~lNELe~~~G~lyan~w~~~ 192 (262)
T 3nol_A 122 SFNYDGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVTAHGEE--LPELNELEWVDGEIFANVWQTN 192 (262)
T ss_dssp EEECSSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECEETTEE--CCCEEEEEEETTEEEEEETTSS
T ss_pred EEECCCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEeccCCcc--ccccceeEEECCEEEEEEccCC
Confidence 12222233444444567777532 346888999987643 2221110000 0000124556999998776788
Q ss_pred eEEEEeCCCCc---eEEccCCCccc---cCCCc--ceeEEEEeCCEEEEEcC
Q 016421 299 MVKKYDKLKNT---WDVLGRLPVRA---DLSNG--WGLAFKACGNELLVVGG 342 (390)
Q Consensus 299 ~v~~yd~~~~~---W~~v~~~~~~~---~~~~~--~~~~~~~~~~~lyv~GG 342 (390)
.|.+-|+++++ |-.++.+.... ..... -|.|.-.-+++|||.|-
T Consensus 193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999986 44444332111 00000 12332223678998885
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0027 Score=54.78 Aligned_cols=163 Identities=11% Similarity=-0.099 Sum_probs=99.9
Q ss_pred eeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCC
Q 016421 181 GSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLET 260 (390)
Q Consensus 181 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~ 260 (390)
+....++.+|+..|..+ .+.+.++|+.+++=..--+++..-...+.+..+++||+.... .+.+.+||+.+
T Consensus 47 GL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~------~~~v~v~D~~t 116 (262)
T 3nol_A 47 GFFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK------NGLGFVWNIRN 116 (262)
T ss_dssp EEEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEEEEETTT
T ss_pred eEEEECCEEEEECCCCC----CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee------CCEEEEEECcc
Confidence 55555899999988654 367899999999854433444433344566789999998543 35688999998
Q ss_pred CceE-EccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEE-ccCCCccccCCCcceeEEEEeCCEEE
Q 016421 261 RKWR-KIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDV-LGRLPVRADLSNGWGLAFKACGNELL 338 (390)
Q Consensus 261 ~~W~-~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~-v~~~~~~~~~~~~~~~~~~~~~~~ly 338 (390)
.+-. +++. +. .+.+++.-+++||+..| .+.++.+|+++.+-.. |.--...+... .. -.+...+|+||
T Consensus 117 ~~~~~ti~~-~~-------eG~glt~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~-~l-NELe~~~G~ly 185 (262)
T 3nol_A 117 LRQVRSFNY-DG-------EGWGLTHNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELP-EL-NELEWVDGEIF 185 (262)
T ss_dssp CCEEEEEEC-SS-------CCCCEEECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECC-CE-EEEEEETTEEE
T ss_pred CcEEEEEEC-CC-------CceEEecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCcccc-cc-ceeEEECCEEE
Confidence 7643 2222 11 12245656677888887 6889999999876332 22110011000 00 11334588999
Q ss_pred EEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016421 339 VVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 339 v~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
+---. ...|.+.||.++ ....|-.++
T Consensus 186 an~w~------~~~I~vIDp~tG---~V~~~Id~~ 211 (262)
T 3nol_A 186 ANVWQ------TNKIVRIDPETG---KVTGIIDLN 211 (262)
T ss_dssp EEETT------SSEEEEECTTTC---BEEEEEECT
T ss_pred EEEcc------CCeEEEEECCCC---cEEEEEECC
Confidence 65532 236889999884 223355554
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0021 Score=58.34 Aligned_cols=242 Identities=9% Similarity=0.037 Sum_probs=120.6
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--C--CEEEEEcccccCCeEEEEECCCCcEeecCCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--G--SELLVFGRELFDFAIWKYSLVFRSWMKCEGM 173 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~--~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~ 173 (390)
..|...+....+..+|.....+..+..+..... .-..+.. . +.+++.|+. +..+.+||..+++|..+..+
T Consensus 24 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~ 97 (379)
T 3jrp_A 24 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG----PVWRVDWAHPKFGTILASCSY--DGKVLIWKEENGRWSQIAVH 97 (379)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEECCCSS----CEEEEEECCGGGCSEEEEEET--TSCEEEEEEETTEEEEEEEE
T ss_pred CEEEEEECCCcEEEEecCCCcceeeeEecCCCC----cEEEEEeCCCCCCCEEEEecc--CCEEEEEEcCCCceeEeeee
Confidence 344444445667778876555544333322111 1112332 2 455555543 35788999999887665444
Q ss_pred CCCCcceeeeee--C--CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEE-EE--------------C
Q 016421 174 NHPRCLFGSGSL--G--SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGF-FM--------------D 234 (390)
Q Consensus 174 ~~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~--------------~ 234 (390)
.........+.+ + +.+++.|+.+ ..+.+||..++.-.....+.........+ .. +
T Consensus 98 ~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T 3jrp_A 98 AVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 171 (379)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CT
T ss_pred cCCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCC
Confidence 332222222222 2 5566666643 34788888776321110011111111122 11 4
Q ss_pred CEEEEEecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEEE-EC---CEEEEEecCCCeEEEEeCCCC
Q 016421 235 GKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVAV-VD---NQLYAVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 235 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~-~~---g~l~v~gg~~~~v~~yd~~~~ 308 (390)
+.+++.|+.++ .+..||..+.. |..+..+..... ....++. -+ +.+++.++..+.+.+||..+.
T Consensus 172 ~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~h~~----~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 172 SRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp TCEEEEEETTS------CEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred CCEEEEEeCCC------eEEEEEecCCCcceeeEEEEecccC----cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 67777776543 36677775543 544433322110 0112222 23 688888888888999998876
Q ss_pred c--eEE-ccCCCccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccC
Q 016421 309 T--WDV-LGRLPVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQ 376 (390)
Q Consensus 309 ~--W~~-v~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p 376 (390)
. +.. +....... ..-.++. .-+++++++|+.++ .|.+|+...+ ..|..+....
T Consensus 242 ~~~~~~~~~~~~~~~----~~v~~~~~s~~g~~l~~~~~dg------~i~iw~~~~~-----~~~~~~~~~~ 298 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFP----DVLWRASWSLSGNVLALSGGDN------KVTLWKENLE-----GKWEPAGEVH 298 (379)
T ss_dssp TSCCEEEESSSSCCS----SCEEEEEECSSSCCEEEEESSS------SEEEEEEEET-----TEEEEEEEEC
T ss_pred CccceeeeeccccCC----CcEEEEEEcCCCCEEEEecCCC------cEEEEeCCCC-----Ccccccccee
Confidence 3 221 11111011 0111222 23666777776553 3778887753 5788776553
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0092 Score=51.85 Aligned_cols=186 Identities=14% Similarity=0.026 Sum_probs=107.9
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
++.+|+..|....+.+.++|+.+++-...-+++......+.+..++++|+..-. .+.+.+||+.+.+=.. .+
T Consensus 31 dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~------~~~v~viD~~t~~v~~--~i 102 (266)
T 2iwa_A 31 NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL------KNIGFIYDRRTLSNIK--NF 102 (266)
T ss_dssp TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT------CSEEEEEETTTTEEEE--EE
T ss_pred CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec------CCEEEEEECCCCcEEE--EE
Confidence 378999877655678999999999865433343333445677778999999542 4569999998775322 12
Q ss_pred CCC-CcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceE-EccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCe
Q 016421 222 HSP-RRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR-KIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNM 299 (390)
Q Consensus 222 ~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~ 299 (390)
+.+ ..+.+.+.-++++|+.-| .+.+..+|+.+.+=. .+..-..+.. ......+...+|++|+-....+.
T Consensus 103 ~~g~~~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p--~~~~nele~~dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 103 THQMKDGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHR--VIRLNELEYINGEVWANIWQTDC 173 (266)
T ss_dssp ECCSSSCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEETTEE--CCCEEEEEEETTEEEEEETTSSE
T ss_pred ECCCCCeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCCCcc--cccceeEEEECCEEEEecCCCCe
Confidence 222 122333333457887532 356888999886633 2221100000 00111344558999988777889
Q ss_pred EEEEeCCCCc---eEEccCCCcc----ccCC--CcceeEEEEeCCEEEEEcCCC
Q 016421 300 VKKYDKLKNT---WDVLGRLPVR----ADLS--NGWGLAFKACGNELLVVGGQR 344 (390)
Q Consensus 300 v~~yd~~~~~---W~~v~~~~~~----~~~~--~~~~~~~~~~~~~lyv~GG~~ 344 (390)
|.+-|+++++ |-.++.+... .... --.|.+...-++++||.|+..
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~ 227 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW 227 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC
Confidence 9999999985 3333322100 0000 001233322357899999854
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.003 Score=54.55 Aligned_cols=151 Identities=11% Similarity=-0.073 Sum_probs=96.5
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
...++.+|+..|.. ..+.++|+.+++-...- ++......+++..+++||++... .+.+++||+.+.+-..-
T Consensus 61 ~~~~~~Ly~stG~~--g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~------~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 61 VFHQGHFFESTGHQ--GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT------EGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEETTEEEEEETTT--TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS------SCEEEEEETTTTEEEEE
T ss_pred EEECCEEEEEcCCC--CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc------CCEEEEEECCcCcEEEE
Confidence 34578999888754 24899999998753333 44433445677889999998543 35699999998765331
Q ss_pred CCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEE-ccCCCCCCCCcCCCCCEEEEECCEEEEEecCC
Q 016421 219 PSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRK-IEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT 297 (390)
Q Consensus 219 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~ 297 (390)
++.+..+.+.+.-++++|+.-| .+.+..+|+.+.+-.. +.....+.. -.....+...+|+||+---..
T Consensus 132 --i~~~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~~~g~~--v~~lNeLe~~dG~lyanvw~s 200 (268)
T 3nok_A 132 --TRYSGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVKLRGQP--VELINELECANGVIYANIWHS 200 (268)
T ss_dssp --EECSSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEECEETTEE--CCCEEEEEEETTEEEEEETTC
T ss_pred --EeCCCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeCCCCcc--cccccccEEeCCEEEEEECCC
Confidence 2222234455566778888743 3468889999876432 221111000 001112455699999776667
Q ss_pred CeEEEEeCCCCc
Q 016421 298 NMVKKYDKLKNT 309 (390)
Q Consensus 298 ~~v~~yd~~~~~ 309 (390)
+.|.+-|+++++
T Consensus 201 ~~I~vIDp~TG~ 212 (268)
T 3nok_A 201 SDVLEIDPATGT 212 (268)
T ss_dssp SEEEEECTTTCB
T ss_pred CeEEEEeCCCCc
Confidence 899999999986
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.015 Score=50.17 Aligned_cols=225 Identities=13% Similarity=-0.062 Sum_probs=115.6
Q ss_pred ccEEEE-E-eCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCC
Q 016421 97 EHWVYL-V-CDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN 174 (390)
Q Consensus 97 ~~~l~~-~-~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~ 174 (390)
+..+|+ . .....+..||+.+.....+....... . . ...+..++.+|+... ...+++||+.+..........
T Consensus 34 ~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-p-~--~i~~~~~g~l~v~~~---~~~i~~~d~~~~~~~~~~~~~ 106 (270)
T 1rwi_B 34 AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQ-P-Q--GLAVDGAGTVYVTDF---NNRVVTLAAGSNNQTVLPFDG 106 (270)
T ss_dssp TCCEEEEECSSSCEEEEECC-----EECCCCSCCS-C-C--CEEECTTCCEEEEET---TTEEEEECTTCSCCEECCCCS
T ss_pred CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCC-c-c--eeEECCCCCEEEEcC---CCEEEEEeCCCceEeeeecCC
Confidence 345777 5 24567888888765544332211100 0 0 112223567887654 457899999877654432211
Q ss_pred CCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCce
Q 016421 175 HPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTC 252 (390)
Q Consensus 175 ~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~ 252 (390)
.....+++.- ++++|+.... ...+.+||..+........... ......+.- +|++|+.... ...
T Consensus 107 -~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~------~~~ 172 (270)
T 1rwi_B 107 -LNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFTGL-NDPDGVAVDNSGNVYVTDTD------NNR 172 (270)
T ss_dssp -CSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCCSC-CSCCCEEECTTCCEEEEEGG------GTE
T ss_pred -cCCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeeccccC-CCceeEEEeCCCCEEEEECC------CCE
Confidence 1122233332 5778887542 2457888876665443321111 111223332 6788887532 246
Q ss_pred EEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEE
Q 016421 253 GEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK 331 (390)
Q Consensus 253 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~ 331 (390)
+.+||+.+..-........ .....++. -+|.+|+.....+.|.+||+.+..-..+.. . ... .. .+++
T Consensus 173 i~~~~~~~~~~~~~~~~~~------~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~-~-~~~---~p-~~i~ 240 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPFTDI------TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF-T-GLN---TP-LAVA 240 (270)
T ss_dssp EEEECTTTCCEEECCCSSC------CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCC-C-SCS---CE-EEEE
T ss_pred EEEEecCCCceEeecccCC------CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeecc-C-CCC---Cc-eeEE
Confidence 8889988766443321110 01112333 246899988777889999997765333221 1 100 01 2232
Q ss_pred E-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 332 A-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 332 ~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
. -+|+||+....++ .|.+|+...
T Consensus 241 ~~~~g~l~v~~~~~~------~v~~~~~~~ 264 (270)
T 1rwi_B 241 VDSDRTVYVADRGND------RVVKLTSLE 264 (270)
T ss_dssp ECTTCCEEEEEGGGT------EEEEECCCG
T ss_pred ECCCCCEEEEECCCC------EEEEEcCCC
Confidence 3 3578998876442 577888765
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.046 Score=48.86 Aligned_cols=230 Identities=11% Similarity=-0.027 Sum_probs=117.3
Q ss_pred ccEEEEEeC-------CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeC-CEEEEEcccccCCeEEEEECCCCcEe
Q 016421 97 EHWVYLVCD-------PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVG-SELLVFGRELFDFAIWKYSLVFRSWM 168 (390)
Q Consensus 97 ~~~l~~~~~-------~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~-~~iy~~Gg~~~~~~~~~yd~~t~~W~ 168 (390)
...+|+... ...+..+|+.+.+....-+.... . ....+..+ +.+|+.+.. ...+.+||+.+++-.
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~---~~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~ 124 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK--P---FGATINNTTQTLWFGNTV--NSAVTAIDAKTGEVK 124 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC--C---CSEEEETTTTEEEEEETT--TTEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC--c---ceEEECCCCCEEEEEecC--CCEEEEEeCCCCeeE
Confidence 356666642 34688899887654322111111 1 01123333 457776542 358999999988742
Q ss_pred ecCCCCCC-C-------cceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CC-E
Q 016421 169 KCEGMNHP-R-------CLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DG-K 236 (390)
Q Consensus 169 ~~~~~~~~-r-------~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~ 236 (390)
..-..... + ....++. -++.+|+.+... ...+.++|+.+++-...-+... ......+.. ++ .
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 125 GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNTG-KMSTGLALDSEGKR 198 (353)
T ss_dssp EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECCCC-TTCCCCEEETTTTE
T ss_pred EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecCCC-CccceEEECCCCCE
Confidence 22111111 0 1122222 246677776321 2458999998876433212111 111222332 44 5
Q ss_pred EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEcc
Q 016421 237 FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 237 iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~ 314 (390)
+|+... ...+..||+.+.+-........... ......++.. ++.+|+.+...+.+.+||+.+.+....-
T Consensus 199 l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 199 LYTTNA-------DGELITIDTADNKILSRKKLLDDGK--EHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp EEEECT-------TSEEEEEETTTTEEEEEEECCCSSS--CCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred EEEEcC-------CCeEEEEECCCCeEEEEEEcCCCCC--CcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 666532 2357789998876433222211100 0011123333 4568887777789999999888754433
Q ss_pred CCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 315 RLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..+.+ .+.++...++.+|+.+..++ .|.+||+.+
T Consensus 270 ~~~~~------~~~~~s~dg~~l~v~~~~~~------~v~~~d~~~ 303 (353)
T 3vgz_A 270 AAPES------LAVLFNPARNEAYVTHRQAG------KVSVIDAKS 303 (353)
T ss_dssp ECSSC------CCEEEETTTTEEEEEETTTT------EEEEEETTT
T ss_pred EcCCC------ceEEECCCCCEEEEEECCCC------eEEEEECCC
Confidence 33222 11222223456888775432 588899876
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.051 Score=50.74 Aligned_cols=193 Identities=17% Similarity=0.153 Sum_probs=99.8
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
++..++.|+. ...+.+||..+.+-... +...........+++..++.|+.++ .+.+||..+++-... +
T Consensus 248 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~--~ 315 (445)
T 2ovr_B 248 DGRRVVSGAY--DFMVKVWDPETETCLHT--LQGHTNRVYSLQFDGIHVVSGSLDT------SIRVWDVETGNCIHT--L 315 (445)
T ss_dssp CSSCEEEEET--TSCEEEEEGGGTEEEEE--ECCCSSCEEEEEECSSEEEEEETTS------CEEEEETTTCCEEEE--E
T ss_pred CCCEEEEEcC--CCEEEEEECCCCcEeEE--ecCCCCceEEEEECCCEEEEEeCCC------eEEEEECCCCCEEEE--E
Confidence 4444444432 35677888776543221 1111122223334666666666543 488999987764321 1
Q ss_pred CCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEE
Q 016421 222 HSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVK 301 (390)
Q Consensus 222 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~ 301 (390)
............++..++.|+.++ .+..||+.+.+-...-..+.. ..........++.+++.|+..+.|.
T Consensus 316 ~~~~~~v~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~l~s~~~dg~v~ 385 (445)
T 2ovr_B 316 TGHQSLTSGMELKDNILVSGNADS------TVKIWDIKTGQCLQTLQGPNK----HQSAVTCLQFNKNFVITSSDDGTVK 385 (445)
T ss_dssp CCCCSCEEEEEEETTEEEEEETTS------CEEEEETTTCCEEEEECSTTS----CSSCEEEEEECSSEEEEEETTSEEE
T ss_pred cCCcccEEEEEEeCCEEEEEeCCC------eEEEEECCCCcEEEEEccCCC----CCCCEEEEEECCCEEEEEeCCCeEE
Confidence 112222233444566666666442 477899887654322111110 0111233455778888888889999
Q ss_pred EEeCCCCceEE-ccCCCccccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 302 KYDKLKNTWDV-LGRLPVRADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 302 ~yd~~~~~W~~-v~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+||..+++... +......... +.-.++... ++.++++|+.++.. ...+++||.+.
T Consensus 386 iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~la~~~~dg~~--~~~l~v~df~~ 442 (445)
T 2ovr_B 386 LWDLKTGEFIRNLVTLESGGSG--GVVWRIRASNTKLVCAVGSRNGTE--ETKLLVLDFDV 442 (445)
T ss_dssp EEETTTCCEEEEEEECTTGGGT--CEEEEEEECSSEEEEEEECSSSSS--CCEEEEEECCC
T ss_pred EEECCCCceeeeeeccccCCCC--ceEEEEEecCCEEEEEEcccCCCC--ccEEEEEECCC
Confidence 99999887543 2111111110 111222222 55677777766542 23577888765
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.007 Score=53.79 Aligned_cols=183 Identities=14% Similarity=0.058 Sum_probs=96.3
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcce-eeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLF-GSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++..++.|+ ....+.+||..+.+......+....... .++. -++..++.|+.++ .+.+||..+++....-
T Consensus 108 ~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~v~~~d~~~~~~~~~~ 179 (337)
T 1gxr_A 108 DGCTLIVGG--EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG------NIAVWDLHNQTLVRQF 179 (337)
T ss_dssp TSSEEEEEE--SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEE
T ss_pred CCCEEEEEc--CCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC------cEEEEeCCCCceeeee
Confidence 455555554 2457899999887743332222222111 2222 2556666666443 4889999887643321
Q ss_pred CCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecC
Q 016421 220 SMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYL 296 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~ 296 (390)
.........+.. +++.++.++.+ ..+..||+.+.+-......... ...++. -+++++++++.
T Consensus 180 --~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~-------v~~~~~s~~~~~l~~~~~ 244 (337)
T 1gxr_A 180 --QGHTDGASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHDFTSQ-------IFSLGYCPTGEWLAVGME 244 (337)
T ss_dssp --CCCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECSSC-------EEEEEECTTSSEEEEEET
T ss_pred --ecccCceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeecCCCc-------eEEEEECCCCCEEEEEcC
Confidence 111112223333 56666666543 3578899987754332211111 011222 35677778877
Q ss_pred CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 297 TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 297 ~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.+..||..+.+=..+...... -..+... ++++++.|+.++ .|.+||..+
T Consensus 245 ~~~i~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~~dg------~i~~~~~~~ 296 (337)
T 1gxr_A 245 SSNVEVLHVNKPDKYQLHLHESC-------VLSLKFAYCGKWFVSTGKDN------LLNAWRTPY 296 (337)
T ss_dssp TSCEEEEETTSSCEEEECCCSSC-------EEEEEECTTSSEEEEEETTS------EEEEEETTT
T ss_pred CCcEEEEECCCCCeEEEcCCccc-------eeEEEECCCCCEEEEecCCC------cEEEEECCC
Confidence 78899999988753333221111 1222222 566777776553 588899877
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.35 E-value=0.037 Score=48.78 Aligned_cols=227 Identities=15% Similarity=0.133 Sum_probs=111.8
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH 175 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~ 175 (390)
..+...+....+..+|....+....-. .. ......+. .++.+++.|+. ...+.+||..+.+-... +..
T Consensus 36 ~~l~s~~~dg~i~iw~~~~~~~~~~~~--~h----~~~v~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~--~~~ 105 (312)
T 4ery_A 36 EWLASSSADKLIKIWGAYDGKFEKTIS--GH----KLGISDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKT--LKG 105 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEEC--CC----SSCEEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEE--EEC
T ss_pred CEEEEeeCCCeEEEEeCCCcccchhhc--cC----CCceEEEEEcCCCCEEEEECC--CCEEEEEECCCCcEEEE--EcC
Confidence 334444445567777877665533211 10 01111222 24555566553 45788999887654221 111
Q ss_pred CCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCc
Q 016421 176 PRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLT 251 (390)
Q Consensus 176 ~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 251 (390)
.......+. -++..++.|+.++ .+.+||..+++-... ++........+.. ++++++.|+.++
T Consensus 106 ~~~~v~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~------ 171 (312)
T 4ery_A 106 HSNYVFCCNFNPQSNLIVSGSFDE------SVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDG------ 171 (312)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTS------CEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS------
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCEEEEE--ecCCCCcEEEEEEcCCCCEEEEEeCCC------
Confidence 111111111 2455666666543 488999987764321 1212122222333 566777766543
Q ss_pred eEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEE
Q 016421 252 CGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK 331 (390)
Q Consensus 252 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~ 331 (390)
.+..||+.+.+-...-...... . ........+++.++.++..+.+..||..+.+-...-........ .......
T Consensus 172 ~i~~wd~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~ 245 (312)
T 4ery_A 172 LCRIWDTASGQCLKTLIDDDNP---P-VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--CIFANFS 245 (312)
T ss_dssp CEEEEETTTCCEEEEECCSSCC---C-EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSS--CCCEEEE
T ss_pred cEEEEECCCCceeeEEeccCCC---c-eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceE--EEEEEEE
Confidence 4778999887643221111100 0 00011123566777777788999999987753332111111110 0111222
Q ss_pred EeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 332 ACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 332 ~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..++.+++.|+.++ .|.+||.++
T Consensus 246 ~~~~~~l~sg~~dg------~i~vwd~~~ 268 (312)
T 4ery_A 246 VTGGKWIVSGSEDN------LVYIWNLQT 268 (312)
T ss_dssp CSSSCEEEECCTTS------CEEEEETTT
T ss_pred eCCCcEEEEECCCC------EEEEEECCC
Confidence 24677788887664 477899876
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.006 Score=55.84 Aligned_cols=182 Identities=12% Similarity=0.089 Sum_probs=97.5
Q ss_pred EEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--C-CEEEEEcccccCCeEEEEECCCCcEeecCCCC
Q 016421 99 WVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--G-SELLVFGRELFDFAIWKYSLVFRSWMKCEGMN 174 (390)
Q Consensus 99 ~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~-~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~ 174 (390)
.+|+.+ ....+..+|..+.+....-.... . ...++. + ..+|+.++. ...+.+||..+++....-...
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~--~-----~~~~~~s~dg~~l~~~~~~--d~~i~v~d~~~~~~~~~~~~~ 73 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS--N-----PMGAVISPDGTKVYVANAH--SNDVSIIDTATNNVIATVPAG 73 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS--S-----EEEEEECTTSSEEEEEEGG--GTEEEEEETTTTEEEEEEECS
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC--C-----cceEEECCCCCEEEEECCC--CCeEEEEECCCCeEEEEEECC
Confidence 345544 35677888988765433211111 0 112222 3 456666643 357899999888764432222
Q ss_pred CCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CC-EEEEEecccCCCccC
Q 016421 175 HPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DG-KFYVIGGMSSPTVSL 250 (390)
Q Consensus 175 ~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~ 250 (390)
. ....++.. +..||+.+.. ...+.+||..+++-...-.. .......+.. ++ .+|+.++.+
T Consensus 74 ~--~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~------ 137 (391)
T 1l0q_A 74 S--SPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNNGD------ 137 (391)
T ss_dssp S--SEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTT------
T ss_pred C--CccceEECCCCCEEEEEECC------CCEEEEEECCCCeEEEEEeC--CCCcceEEECCCCCEEEEEeCCC------
Confidence 2 11222222 4456666543 24589999998875443221 1111222322 34 576765432
Q ss_pred ceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEE
Q 016421 251 TCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDV 312 (390)
Q Consensus 251 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~ 312 (390)
..+..||+.+.+....-..... ...++.. +..+|+.+...+.+.+||..+++-..
T Consensus 138 ~~v~~~d~~~~~~~~~~~~~~~-------~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 138 KTVSVINTVTKAVINTVSVGRS-------PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID 194 (391)
T ss_dssp TEEEEEETTTTEEEEEEECCSS-------EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCcEEEEEecCCC-------cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence 3688899988876543222111 0122222 33677777777899999998876544
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0026 Score=58.37 Aligned_cols=178 Identities=12% Similarity=0.044 Sum_probs=97.0
Q ss_pred EEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016421 144 ELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 144 ~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
.+|+.++. ...+.+||..+++-...-.... ...+++.. +..+|+.++.+ ..+.++|..+++....-..
T Consensus 3 ~l~vs~~~--d~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~d------~~i~v~d~~~~~~~~~~~~ 72 (391)
T 1l0q_A 3 FAYIANSE--SDNISVIDVTSNKVTATIPVGS--NPMGAVISPDGTKVYVANAHS------NDVSIIDTATNNVIATVPA 72 (391)
T ss_dssp EEEEEETT--TTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEEGGG------TEEEEEETTTTEEEEEEEC
T ss_pred EEEEEcCC--CCEEEEEECCCCeEEEEeecCC--CcceEEECCCCCEEEEECCCC------CeEEEEECCCCeEEEEEEC
Confidence 45666542 4578999998876533222111 11222222 34677776543 4588999988875443222
Q ss_pred CCCCcCceEEEE--CC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CC-EEEEEecC
Q 016421 222 HSPRRLCSGFFM--DG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DN-QLYAVEYL 296 (390)
Q Consensus 222 ~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g-~l~v~gg~ 296 (390)
+. ....+.. ++ .||+.+.. ...+.+||+.+++-......... ...++.. +| .+|+.+..
T Consensus 73 ~~---~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~~s~dg~~l~~~~~~ 136 (391)
T 1l0q_A 73 GS---SPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKTGKS-------PLGLALSPDGKKLYVTNNG 136 (391)
T ss_dssp SS---SEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECSSS-------EEEEEECTTSSEEEEEETT
T ss_pred CC---CccceEECCCCCEEEEEECC------CCEEEEEECCCCeEEEEEeCCCC-------cceEEECCCCCEEEEEeCC
Confidence 22 2222333 34 56665432 24588899998865433221110 1123332 33 57778877
Q ss_pred CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe--CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 297 TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC--GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 297 ~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.+.+||..+++....-...... ..++.. ++.||+.++.++ .|.+||+.+
T Consensus 137 ~~~v~~~d~~~~~~~~~~~~~~~~-------~~~~~~~dg~~l~~~~~~~~------~v~~~d~~~ 189 (391)
T 1l0q_A 137 DKTVSVINTVTKAVINTVSVGRSP-------KGIAVTPDGTKVYVANFDSM------SISVIDTVT 189 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECCSSE-------EEEEECTTSSEEEEEETTTT------EEEEEETTT
T ss_pred CCEEEEEECCCCcEEEEEecCCCc-------ceEEECCCCCEEEEEeCCCC------EEEEEECCC
Confidence 889999999888765432221111 122222 446777766442 578888876
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.08 Score=47.24 Aligned_cols=196 Identities=8% Similarity=-0.048 Sum_probs=95.3
Q ss_pred CCEEEEEcccc----cCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016421 142 GSELLVFGREL----FDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 142 ~~~iy~~Gg~~----~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
++.+|+..... ....++++|+.+.+....-+............-+..+|+.++.. ..+.++|+.+++-..
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~~~ 125 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVN------SAVTAIDAKTGEVKG 125 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTT------TEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCC------CEEEEEeCCCCeeEE
Confidence 35677665321 24578999998876533222111111111112245688876532 468999999887432
Q ss_pred cCCCCCC--------CcCceEEEE-C-CEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEEC
Q 016421 218 LPSMHSP--------RRLCSGFFM-D-GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVD 287 (390)
Q Consensus 218 ~~~~~~~--------r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 287 (390)
.-+.+.. ......+.. + +.+|+.+... ...++.||+.+.+-...-...... . .. ....-+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~---~-~~-~~~s~d 195 (353)
T 3vgz_A 126 RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNTGKM---S-TG-LALDSE 195 (353)
T ss_dssp EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECCCCTT---C-CC-CEEETT
T ss_pred EEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecCCCCc---c-ce-EEECCC
Confidence 2111111 011223332 3 4677765221 245888999877643322211100 0 11 122334
Q ss_pred C-EEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 288 N-QLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 288 g-~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
| .+|+.+ ..+.+.+||..+.+-......+.........+.++...++.||+.+... ..|.+||+.+
T Consensus 196 g~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~ 262 (353)
T 3vgz_A 196 GKRLYTTN-ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA------AEVLVVDTRN 262 (353)
T ss_dssp TTEEEEEC-TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS------SEEEEEETTT
T ss_pred CCEEEEEc-CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC------CEEEEEECCC
Confidence 4 455554 4678999999887533322221110000001122212255687776432 2588899876
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0019 Score=58.31 Aligned_cols=189 Identities=12% Similarity=0.035 Sum_probs=90.6
Q ss_pred eEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcc-eeee-ee-
Q 016421 109 WEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCL-FGSG-SL- 185 (390)
Q Consensus 109 ~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~-~~~~-~~- 185 (390)
++.+|+.+.++..+......... ....+..++++|+.+.......+++||..+++++.+......... ..++ .-
T Consensus 20 v~~~d~~tg~~~~~~~~~~~~~p---~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spd 96 (347)
T 3hfq_A 20 QGTLDTTAKTLTNDGLLAATQNP---TYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEA 96 (347)
T ss_dssp EEEEETTTTEEEEEEEEEECSCC---CCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETT
T ss_pred EEEEcCCCCeEEEeeeeeccCCc---ceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCC
Confidence 46678877776553222111111 011233466777765432345789999987777655432111111 1222 22
Q ss_pred CCEEEEEeccCCCCCccceEEEEECC-CCcEEEcCCC------CCCCc---CceEEEE--CCEEEEEecccCCCccCceE
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDST-TGRWEMLPSM------HSPRR---LCSGFFM--DGKFYVIGGMSSPTVSLTCG 253 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~------~~~r~---~~~~~~~--~~~iyv~GG~~~~~~~~~~v 253 (390)
+..+|+.+.. ...+.+||.. .+..+.+... |.+|. ....+.+ +|++|+.+.. ...+
T Consensus 97 g~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~------~~~v 164 (347)
T 3hfq_A 97 RQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG------SDKV 164 (347)
T ss_dssp TTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT------TTEE
T ss_pred CCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC------CCEE
Confidence 3457776532 2346777764 3344332211 11111 1122222 6777765432 2357
Q ss_pred EEEeCC-CCceEEccCCCCCCCCcCCCCCEEEEECCE-EEEEecCCCeEEEEeCC--CCceEEcc
Q 016421 254 EEFDLE-TRKWRKIEGMYPNVNRAAQAPPLVAVVDNQ-LYAVEYLTNMVKKYDKL--KNTWDVLG 314 (390)
Q Consensus 254 ~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~-l~v~gg~~~~v~~yd~~--~~~W~~v~ 314 (390)
..||+. +++...+..........++ ..+..-+|+ +|+.+...+.+.+||.. ++++..+.
T Consensus 165 ~~~~~~~~g~~~~~~~~~~~~g~~p~--~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~ 227 (347)
T 3hfq_A 165 YVYNVSDAGQLSEQSVLTMEAGFGPR--HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLG 227 (347)
T ss_dssp EEEEECTTSCEEEEEEEECCTTCCEE--EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCcEEEeeeEEcCCCCCCc--eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEee
Confidence 788887 5665544321111000010 012223454 88877666777777665 46665543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.015 Score=50.21 Aligned_cols=158 Identities=4% Similarity=-0.185 Sum_probs=98.6
Q ss_pred eeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCC
Q 016421 181 GSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLET 260 (390)
Q Consensus 181 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~ 260 (390)
+....++.||+..|..+ .+.++|+++++=..-- ++..-...+.+..+++||+.... .+.+++||+.+
T Consensus 59 GL~~~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~------~~~v~V~D~~T 125 (268)
T 3nok_A 59 GLVFHQGHFFESTGHQG------TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT------EGLLFTWSGMP 125 (268)
T ss_dssp EEEEETTEEEEEETTTT------EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS------SCEEEEEETTT
T ss_pred eEEEECCEEEEEcCCCC------EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc------CCEEEEEECCc
Confidence 55666899999988643 2889999998743322 44333334456678999998543 35688999998
Q ss_pred CceE-EccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEE-cc--CCCccccCCCcceeEEEEeCCE
Q 016421 261 RKWR-KIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDV-LG--RLPVRADLSNGWGLAFKACGNE 336 (390)
Q Consensus 261 ~~W~-~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~-v~--~~~~~~~~~~~~~~~~~~~~~~ 336 (390)
.+-. +++. +. .+.+++.-+++||+..| .+.+..+|+++.+-.. |. .-+.+.. .-..+...+|+
T Consensus 126 l~~~~ti~~-~~-------eGwGLt~Dg~~L~vSdG-s~~l~~iDp~T~~v~~~I~V~~~g~~v~----~lNeLe~~dG~ 192 (268)
T 3nok_A 126 PQRERTTRY-SG-------EGWGLCYWNGKLVRSDG-GTMLTFHEPDGFALVGAVQVKLRGQPVE----LINELECANGV 192 (268)
T ss_dssp TEEEEEEEC-SS-------CCCCEEEETTEEEEECS-SSEEEEECTTTCCEEEEEECEETTEECC----CEEEEEEETTE
T ss_pred CcEEEEEeC-CC-------ceeEEecCCCEEEEECC-CCEEEEEcCCCCeEEEEEEeCCCCcccc----cccccEEeCCE
Confidence 6643 2322 11 12346777889999986 8899999999976433 22 1111111 00123345889
Q ss_pred EEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016421 337 LLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 337 lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
||+---. ...|.+.||.++ ....|-.++
T Consensus 193 lyanvw~------s~~I~vIDp~TG---~V~~~Idl~ 220 (268)
T 3nok_A 193 IYANIWH------SSDVLEIDPATG---TVVGVIDAS 220 (268)
T ss_dssp EEEEETT------CSEEEEECTTTC---BEEEEEECH
T ss_pred EEEEECC------CCeEEEEeCCCC---cEEEEEECC
Confidence 9964432 237889999884 233455555
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.018 Score=53.83 Aligned_cols=186 Identities=14% Similarity=0.122 Sum_probs=103.2
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
+..++..++.|+. ...+.+||..+.+-... +........+...++.+++.|+.++ .+.+||..+++-...
T Consensus 139 ~~~d~~~l~~g~~--dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sg~~dg------~i~vwd~~~~~~~~~ 208 (435)
T 1p22_A 139 LQYDDQKIVSGLR--DNTIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSSDS------TVRVWDVNTGEMLNT 208 (435)
T ss_dssp EECCSSEEEEEES--SSCEEEEESSSCCEEEE--ECCCSSCEEEEECCSSEEEEEETTS------CEEEEESSSCCEEEE
T ss_pred EEECCCEEEEEeC--CCeEEEEeCCCCeEEEE--EcCCCCcEEEEEECCCEEEEEcCCC------eEEEEECCCCcEEEE
Confidence 3446666666653 45788999887664332 1222222233344777778887653 488999988765332
Q ss_pred CCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEc-cCCCCCCCCcCCCCCEEEEECCEEEEEecCC
Q 016421 219 PSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKI-EGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT 297 (390)
Q Consensus 219 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~ 297 (390)
+.........+..++..++.|+.++ .+..||..+..-... ..+... ......+..++..++.|+..
T Consensus 209 --~~~h~~~v~~l~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~l~s~~~d 275 (435)
T 1p22_A 209 --LIHHCEAVLHLRFNNGMMVTCSKDR------SIAVWDMASPTDITLRRVLVGH-----RAAVNVVDFDDKYIVSASGD 275 (435)
T ss_dssp --ECCCCSCEEEEECCTTEEEEEETTS------CEEEEECSSSSCCEEEEEECCC-----SSCEEEEEEETTEEEEEETT
T ss_pred --EcCCCCcEEEEEEcCCEEEEeeCCC------cEEEEeCCCCCCceeeeEecCC-----CCcEEEEEeCCCEEEEEeCC
Confidence 1122222333344555666666543 467788876542211 111110 01112334467777777778
Q ss_pred CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 298 NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 298 ~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.+.+||..+.+-.. .+..... ....+..++.+++.|+.++ .|.+||..+
T Consensus 276 g~i~vwd~~~~~~~~--~~~~~~~-----~v~~~~~~~~~l~~g~~dg------~i~iwd~~~ 325 (435)
T 1p22_A 276 RTIKVWNTSTCEFVR--TLNGHKR-----GIACLQYRDRLVVSGSSDN------TIRLWDIEC 325 (435)
T ss_dssp SEEEEEETTTCCEEE--EEECCSS-----CEEEEEEETTEEEEEETTS------CEEEEETTT
T ss_pred CeEEEEECCcCcEEE--EEcCCCC-----cEEEEEeCCCEEEEEeCCC------eEEEEECCC
Confidence 899999998875332 2211111 1233445677777777654 478899876
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.022 Score=49.41 Aligned_cols=154 Identities=14% Similarity=-0.017 Sum_probs=92.4
Q ss_pred eeeeeeC-CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeC
Q 016421 180 FGSGSLG-SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDL 258 (390)
Q Consensus 180 ~~~~~~~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 258 (390)
++..... +.+|+..|..+ .+.+.++|+.+++=...-+++......+.+..++++|+..-. .+.+.+||+
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~------~~~v~viD~ 93 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL------KNIGFIYDR 93 (266)
T ss_dssp EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT------CSEEEEEET
T ss_pred ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec------CCEEEEEEC
Confidence 4555544 89999877432 367999999999854432333333334556678899998432 456889999
Q ss_pred CCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEE-cc--CCCccccCCCcceeEEEEeCC
Q 016421 259 ETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDV-LG--RLPVRADLSNGWGLAFKACGN 335 (390)
Q Consensus 259 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~-v~--~~~~~~~~~~~~~~~~~~~~~ 335 (390)
.+.+= +..++.. . ..+..++.-++++|+..| .+.+..+|+++.+=.. |. .-+.+.... -.+...++
T Consensus 94 ~t~~v--~~~i~~g-~---~~g~glt~Dg~~l~vs~g-s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~----nele~~dg 162 (266)
T 2iwa_A 94 RTLSN--IKNFTHQ-M---KDGWGLATDGKILYGSDG-TSILYEIDPHTFKLIKKHNVKYNGHRVIRL----NELEYING 162 (266)
T ss_dssp TTTEE--EEEEECC-S---SSCCEEEECSSSEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCE----EEEEEETT
T ss_pred CCCcE--EEEEECC-C---CCeEEEEECCCEEEEECC-CCeEEEEECCCCcEEEEEEECCCCcccccc----eeEEEECC
Confidence 87643 2222221 0 012245555677898875 7899999999876332 22 111111000 12233488
Q ss_pred EEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 336 ELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 336 ~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+||+--... ..|.+.|+.+
T Consensus 163 ~lyvn~~~~------~~V~vID~~t 181 (266)
T 2iwa_A 163 EVWANIWQT------DCIARISAKD 181 (266)
T ss_dssp EEEEEETTS------SEEEEEETTT
T ss_pred EEEEecCCC------CeEEEEECCC
Confidence 999776432 2688899977
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.086 Score=45.74 Aligned_cols=221 Identities=11% Similarity=0.025 Sum_probs=116.2
Q ss_pred ccEEEEEeC-CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCC
Q 016421 97 EHWVYLVCD-PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGM 173 (390)
Q Consensus 97 ~~~l~~~~~-~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~ 173 (390)
+..+|+... ...+..||+. .+...+.. +... .....++ .++.+|+... ....+++||+. ++.......
T Consensus 25 ~g~l~v~~~~~~~v~~~d~~-~~~~~~~~-~~~~----~~~~~i~~~~~g~l~v~~~--~~~~i~~~~~~-g~~~~~~~~ 95 (299)
T 2z2n_A 25 KGKVWITQHKANMISCINLD-GKITEYPL-PTPD----AKVMCLTISSDGEVWFTEN--AANKIGRITKK-GIIKEYTLP 95 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-CCEEEEEC-SSTT----CCEEEEEECTTSCEEEEET--TTTEEEEECTT-SCEEEEECS
T ss_pred CCCEEEEecCCCcEEEEcCC-CCeEEecC-Cccc----CceeeEEECCCCCEEEeCC--CCCeEEEECCC-CcEEEEeCC
Confidence 345666543 4678889988 66654331 1110 0112233 3567777643 13468899986 455443321
Q ss_pred CCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccC
Q 016421 174 NHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSL 250 (390)
Q Consensus 174 ~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 250 (390)
.......+++.. ++.+|+.... ...+.+||+ +++...... +........+.. +|++|+.... .
T Consensus 96 ~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~------~ 161 (299)
T 2z2n_A 96 NPDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYEL-PNKGSYPSFITLGSDNALWFTENQ------N 161 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEEC-SSTTCCEEEEEECTTSCEEEEETT------T
T ss_pred CcCCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecC-CCCCCCCceEEEcCCCCEEEEeCC------C
Confidence 111222233333 5788887532 235888998 666554321 211112223333 6788886421 2
Q ss_pred ceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeE
Q 016421 251 TCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLA 329 (390)
Q Consensus 251 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~ 329 (390)
..+.+||+ +++...+.. +... .....++. -+|++|+.....+.+.+||+ +++...+. ++..... . .+
T Consensus 162 ~~i~~~~~-~g~~~~~~~-~~~~----~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-~~~~~~~---~-~~ 229 (299)
T 2z2n_A 162 NAIGRITE-SGDITEFKI-PTPA----SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFK-IPTPNAR---P-HA 229 (299)
T ss_dssp TEEEEECT-TCCEEEEEC-SSTT----CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-CSSTTCC---E-EE
T ss_pred CEEEEEcC-CCcEEEeeC-CCCC----CcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEE-CCCCCCC---c-ee
Confidence 45888999 777765421 1110 01112333 25789988766789999999 77776542 2211110 1 22
Q ss_pred EEE-eCCEEEEEcCCCCCCCCeEEEeeecC
Q 016421 330 FKA-CGNELLVVGGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 330 ~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~ 358 (390)
++. -+|+||+..... ..|.+||+
T Consensus 230 i~~~~~g~l~v~~~~~------~~i~~~d~ 253 (299)
T 2z2n_A 230 ITAGAGIDLWFTEWGA------NKIGRLTS 253 (299)
T ss_dssp EEECSTTCEEEEETTT------TEEEEEET
T ss_pred EEECCCCCEEEeccCC------ceEEEECC
Confidence 323 257888875322 14777887
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.066 Score=47.46 Aligned_cols=245 Identities=9% Similarity=0.035 Sum_probs=115.2
Q ss_pred ccEEEEEeCC-CeeEEEecC--CCceeeCCCCCCCcccCCCCeeEEEeC-CEEEEEcccccCCeEEEEECCCCc-EeecC
Q 016421 97 EHWVYLVCDP-RGWEAFDPM--KKKWMALPKIPCDECFNHADKESLAVG-SELLVFGRELFDFAIWKYSLVFRS-WMKCE 171 (390)
Q Consensus 97 ~~~l~~~~~~-~~~~~~d~~--~~~W~~l~~~p~~~~~~~~~~~~~~~~-~~iy~~Gg~~~~~~~~~yd~~t~~-W~~~~ 171 (390)
...+++.+.. ..+..|+.. +.++..+..++..... ....+..+ +.+|+.+. ....+.+||...+. ...+.
T Consensus 49 g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~dg~~l~~~~~--~~~~i~~~d~~~~~~~~~~~ 123 (343)
T 1ri6_A 49 KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL---THISTDHQGQFVFVGSY--NAGNVSVTRLEDGLPVGVVD 123 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC---SEEEECTTSSEEEEEET--TTTEEEEEEEETTEEEEEEE
T ss_pred CCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCC---cEEEEcCCCCEEEEEec--CCCeEEEEECCCCccccccc
Confidence 3456666543 667777765 5666554333321111 11122223 34666543 23467888873221 11111
Q ss_pred CCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCC-CcEEEcC----CCCCCCcCceEEEE--CC-EEEEEe
Q 016421 172 GMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTT-GRWEMLP----SMHSPRRLCSGFFM--DG-KFYVIG 241 (390)
Q Consensus 172 ~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~----~~~~~r~~~~~~~~--~~-~iyv~G 241 (390)
..+.......++.. +..+|+.+.. ...+.+||..+ ++...+. ..+... ....+.+ ++ .+|+.+
T Consensus 124 ~~~~~~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pdg~~l~~~~ 196 (343)
T 1ri6_A 124 VVEGLDGCHSANISPDNRTLWVPALK------QDRICLFTVSDDGHLVAQDPAEVTTVEGA-GPRHMVFHPNEQYAYCVN 196 (343)
T ss_dssp EECCCTTBCCCEECTTSSEEEEEEGG------GTEEEEEEECTTSCEEEEEEEEEECSTTC-CEEEEEECTTSSEEEEEE
T ss_pred cccCCCCceEEEECCCCCEEEEecCC------CCEEEEEEecCCCceeeecccccccCCCC-CcceEEECCCCCEEEEEe
Confidence 11111112222222 3467776532 24588999887 6665322 111111 1222333 44 477765
Q ss_pred cccCCCccCceEEEEeCC--CCceEEc---cCCCCCCCCcCCCCC-EEEEE-CC-EEEEEecCCCeEEEEeCC--CCceE
Q 016421 242 GMSSPTVSLTCGEEFDLE--TRKWRKI---EGMYPNVNRAAQAPP-LVAVV-DN-QLYAVEYLTNMVKKYDKL--KNTWD 311 (390)
Q Consensus 242 G~~~~~~~~~~v~~yd~~--~~~W~~~---~~~~~~~~~~~~~~~-~~~~~-~g-~l~v~gg~~~~v~~yd~~--~~~W~ 311 (390)
.. ...+..||.. +.++..+ ..++.... ....+ .++.. +| .||+.+...+.+.+||.. ++++.
T Consensus 197 ~~------~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~ 268 (343)
T 1ri6_A 197 EL------NSSVDVWELKDPHGNIECVQTLDMMPENFS--DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 268 (343)
T ss_dssp TT------TTEEEEEESSCTTSCCEEEEEEECSCTTCC--SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred CC------CCEEEEEEecCCCCcEEEEeeccccCcccc--ccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceE
Confidence 32 2357778874 4555332 22222100 00111 12222 34 677776667889999987 56677
Q ss_pred EccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeee--cCCCCCCCCCCceEEecccC
Q 016421 312 VLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSW--CPKSGVNNGTLDWKVLAEKQ 376 (390)
Q Consensus 312 ~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y--~~~~~~~~~~~~W~~~~~~p 376 (390)
.+..++..... .+.++..-+..||+.++.++ .+.+| |+++ .+++.+...+
T Consensus 269 ~~~~~~~~~~~---~~~~~s~dg~~l~~~~~~~~------~v~v~~~d~~~------g~~~~~~~~~ 320 (343)
T 1ri6_A 269 KEGFQPTETQP---RGFNVDHSGKYLIAAGQKSH------HISVYEIVGEQ------GLLHEKGRYA 320 (343)
T ss_dssp EEEEEECSSSC---CCEEECTTSSEEEEECTTTC------EEEEEEEETTT------TEEEEEEEEE
T ss_pred EeeeecCCCcc---ceEEECCCCCEEEEecCCCC------eEEEEEEcCCC------ceeeEccccc
Confidence 76554432221 11222112345666664332 35555 6666 4688777653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.03 Score=51.92 Aligned_cols=149 Identities=9% Similarity=0.021 Sum_probs=83.9
Q ss_pred EEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCC--
Q 016421 146 LVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH-- 222 (390)
Q Consensus 146 y~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~-- 222 (390)
|+.|.......++.+|+.+..+..+..++......+++.. ++.+++.++.+ ..+.++|+.+++.....+..
T Consensus 92 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~------~~i~~~d~~~g~~~~~~~~~~~ 165 (433)
T 3bws_A 92 RIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLED------EGMDVLDINSGQTVRLSPPEKY 165 (433)
T ss_dssp EESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTS------SSEEEEETTTCCEEEECCCHHH
T ss_pred eecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCC------CeEEEEECCCCeEeeecCcccc
Confidence 3334333445788899877766554433322222222222 67888877643 34899999988876543321
Q ss_pred -CCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCC
Q 016421 223 -SPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLT 297 (390)
Q Consensus 223 -~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~ 297 (390)
.+......+.. ++++++.++.+ ..+.+||+.+.+....-.... .....++.. +..+|+.+...
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~ 233 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVDLTG------KWSKILLYDPIRDLVYCSNWIS 233 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEECSS------SSEEEEEEETTTTEEEEEETTT
T ss_pred cccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEcCCC------CCeeEEEEcCCCCEEEEEecCC
Confidence 11112222333 78888887653 357889998865432211111 011123333 34577777677
Q ss_pred CeEEEEeCCCCceEE
Q 016421 298 NMVKKYDKLKNTWDV 312 (390)
Q Consensus 298 ~~v~~yd~~~~~W~~ 312 (390)
+.+.+||+.+.+...
T Consensus 234 ~~i~~~d~~~~~~~~ 248 (433)
T 3bws_A 234 EDISVIDRKTKLEIR 248 (433)
T ss_dssp TEEEEEETTTTEEEE
T ss_pred CcEEEEECCCCcEEE
Confidence 899999998876544
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.013 Score=59.13 Aligned_cols=241 Identities=9% Similarity=0.031 Sum_probs=121.8
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--C--CEEEEEcccccCCeEEEEECCCCcEeecCCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--G--SELLVFGRELFDFAIWKYSLVFRSWMKCEGM 173 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~--~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~ 173 (390)
..+...+....+..+|....++..+..+..+.. .-..+.. + +.+++.|+. +..+.+||..+++|..+..+
T Consensus 22 ~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~----~V~~l~~s~~~~~~~l~s~s~--Dg~I~vwd~~~~~~~~~~~~ 95 (753)
T 3jro_A 22 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG----PVWRVDWAHPKFGTILASCSY--DGKVLIWKEENGRWSQIAVH 95 (753)
T ss_dssp CCEEEEETTTEEEEEEEETTEEEEEEEECCCSS----CEEEEEECCTTSCSEEEEEET--TSCEEEEEEETTEEEEEEEE
T ss_pred CeEEEEECCCcEEEEecCCCCCccceeccCCcC----ceEEEEecCCCCCCEEEEEeC--CCeEEEEECCCCcccccccc
Confidence 445544456677888887666655433332211 1112222 2 555666653 45788999988887655444
Q ss_pred CCCCcceeeeee--C--CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE---------------C
Q 016421 174 NHPRCLFGSGSL--G--SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM---------------D 234 (390)
Q Consensus 174 ~~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---------------~ 234 (390)
.........+.+ + +.+++.|+.+ ..+.+||..++.-.....+.........+.. +
T Consensus 96 ~~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d 169 (753)
T 3jro_A 96 AVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 169 (753)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGG
T ss_pred cCCCCCeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCC
Confidence 332222222222 2 5677777654 3478888876632111001111111112221 3
Q ss_pred CEEEEEecccCCCccCceEEEEeCCCC--ceEEccCCCCCCCCcCCCCCEEEE-EC---CEEEEEecCCCeEEEEeCCCC
Q 016421 235 GKFYVIGGMSSPTVSLTCGEEFDLETR--KWRKIEGMYPNVNRAAQAPPLVAV-VD---NQLYAVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 235 ~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~-~~---g~l~v~gg~~~~v~~yd~~~~ 308 (390)
+.+++.|+.++ .+..||..+. .+..+..+.... .....++. -+ +.+++.|+..+.|.+||..+.
T Consensus 170 ~~~l~sgs~dg------~I~iwd~~~~~~~~~~~~~~~~h~----~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 170 SRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEGHS----DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp GCCEEEEETTS------CEEEEEEETTTTEEEEEEEECCCS----SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred CCEEEEEECCC------eEEEEeccCCcccceeeeeecCCC----CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 56666666543 3666776554 344333222211 01111222 23 788888888889999998775
Q ss_pred c--eEE-ccCCCccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016421 309 T--WDV-LGRLPVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 309 ~--W~~-v~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
+ +.. +........ .-.+++ .-++..++.|+.++ .|.+|+..++ ..|..+...
T Consensus 240 ~~~~~~~~~~~~~~~~----~v~~l~~spdg~~l~s~s~Dg------~I~vwd~~~~-----~~~~~~~~~ 295 (753)
T 3jro_A 240 QGPWKKTLLKEEKFPD----VLWRASWSLSGNVLALSGGDN------KVTLWKENLE-----GKWEPAGEV 295 (753)
T ss_dssp SSCCBCCBSSSSCCSS----CCCCEEECTTTCCEEEECSSS------CEECCBCCSS-----SCCBCCCCB
T ss_pred CCcceeEEeccCCCCC----ceEEEEEcCCCCEEEEEcCCC------EEEEEecCCC-----CCccccccc
Confidence 3 211 111111111 111222 23677778887654 4889998863 467766544
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.11 Score=45.16 Aligned_cols=222 Identities=7% Similarity=-0.017 Sum_probs=116.1
Q ss_pred ccEEEEEeC-CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--CCEEEEEcccccCCeEEEEECCCCcEeecCCC
Q 016421 97 EHWVYLVCD-PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--GSELLVFGRELFDFAIWKYSLVFRSWMKCEGM 173 (390)
Q Consensus 97 ~~~l~~~~~-~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~ 173 (390)
+..+|+... ...+..||+. .+...+. ++... .....++. ++.+|+.... ...++++|+ +++.......
T Consensus 67 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~~~~----~~~~~i~~~~~g~l~v~~~~--~~~i~~~d~-~g~~~~~~~~ 137 (299)
T 2z2n_A 67 DGEVWFTENAANKIGRITKK-GIIKEYT-LPNPD----SAPYGITEGPNGDIWFTEMN--GNRIGRITD-DGKIREYELP 137 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEE-CSSTT----CCEEEEEECTTSCEEEEETT--TTEEEEECT-TCCEEEEECS
T ss_pred CCCEEEeCCCCCeEEEECCC-CcEEEEe-CCCcC----CCceeeEECCCCCEEEEecC--CceEEEECC-CCCEEEecCC
Confidence 345666543 4568889986 3443332 12110 01122332 5678876432 357889999 6665543221
Q ss_pred CCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccC
Q 016421 174 NHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSL 250 (390)
Q Consensus 174 ~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 250 (390)
.......+++.- ++.+|+.... ...+.+||+ +++..... .+........+.. +|+||+.... .
T Consensus 138 ~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~------~ 203 (299)
T 2z2n_A 138 NKGSYPSFITLGSDNALWFTENQ------NNAIGRITE-SGDITEFK-IPTPASGPVGITKGNDDALWFVEII------G 203 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT------T
T ss_pred CCCCCCceEEEcCCCCEEEEeCC------CCEEEEEcC-CCcEEEee-CCCCCCcceeEEECCCCCEEEEccC------C
Confidence 111122233332 5688886421 245889999 77776541 1222122233333 5788886432 3
Q ss_pred ceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeE
Q 016421 251 TCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLA 329 (390)
Q Consensus 251 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~ 329 (390)
..+.+||+ +++...+.. +.. ......++. -+|++|+.....+.|.+||+ +++...+. ++..... . .+
T Consensus 204 ~~i~~~~~-~g~~~~~~~-~~~----~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~-~~~~~~~---~-~~ 271 (299)
T 2z2n_A 204 NKIGRITT-SGEITEFKI-PTP----NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYP-IQIKSAE---P-HG 271 (299)
T ss_dssp TEEEEECT-TCCEEEEEC-SST----TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEE-CSSSSCC---E-EE
T ss_pred ceEEEECC-CCcEEEEEC-CCC----CCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEe-CCCCCCc---c-ce
Confidence 45888999 777765422 110 001112333 25789988766788999999 45544432 1211110 1 22
Q ss_pred EEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 330 FKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 330 ~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
++..++.||+..... .+.+|++++
T Consensus 272 i~~~~g~l~v~~~~~-------~l~~~~~~~ 295 (299)
T 2z2n_A 272 ICFDGETIWFAMECD-------KIGKLTLIK 295 (299)
T ss_dssp EEECSSCEEEEETTT-------EEEEEEEC-
T ss_pred EEecCCCEEEEecCC-------cEEEEEcCc
Confidence 323678888876421 477888876
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.015 Score=52.59 Aligned_cols=191 Identities=9% Similarity=0.065 Sum_probs=101.3
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--C--CEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--G--SIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
++.+++.|+. +..+.+||....++..+..+...........+ + +.+++.|+.++ .+.+||..++.|..
T Consensus 22 ~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg------~v~iwd~~~~~~~~ 93 (379)
T 3jrp_A 22 YGKRLATCSS--DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKEENGRWSQ 93 (379)
T ss_dssp SSSEEEEEET--TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS------CEEEEEEETTEEEE
T ss_pred CCCEEEEEEC--CCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC------EEEEEEcCCCceeE
Confidence 3445555543 34677888776666554443322222222222 2 56666676543 48889999998876
Q ss_pred cCCCCCCCcCceEEEE--C--CEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-------
Q 016421 218 LPSMHSPRRLCSGFFM--D--GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV------- 286 (390)
Q Consensus 218 ~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~------- 286 (390)
+..+.........+.. + +.+++.|+.+ ..+..||..+..-.....+... ......++..
T Consensus 94 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 94 IAVHAVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAH----AIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEECC----TTCEEEEEECCCC----
T ss_pred eeeecCCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecCC----CCceEEEEEcCcccccc
Confidence 5444433333333333 3 5666666553 3467788877632111000000 0000012221
Q ss_pred -------CCEEEEEecCCCeEEEEeCCCCc--eEEccCCCccccCCCcceeEEEEe-C---CEEEEEcCCCCCCCCeEEE
Q 016421 287 -------DNQLYAVEYLTNMVKKYDKLKNT--WDVLGRLPVRADLSNGWGLAFKAC-G---NELLVVGGQRGPEGENVVL 353 (390)
Q Consensus 287 -------~g~l~v~gg~~~~v~~yd~~~~~--W~~v~~~~~~~~~~~~~~~~~~~~-~---~~lyv~GG~~~~~~~~~~i 353 (390)
++.+++.|+..+.|.+||..++. |..+..+..... .-.+++.. + +.+++.|+.++ .|
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~----~v~~~~~sp~~~~~~~l~s~~~dg------~i 233 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPTVLLRSYLASVSQDR------TC 233 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCCCSSSEEEEEEETTS------CE
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC----cEeEEEECCCCCCCCeEEEEeCCC------EE
Confidence 47788888888889999986653 555443332211 11222222 3 68888887664 37
Q ss_pred eeecCCC
Q 016421 354 NSWCPKS 360 (390)
Q Consensus 354 ~~y~~~~ 360 (390)
.+||..+
T Consensus 234 ~iwd~~~ 240 (379)
T 3jrp_A 234 IIWTQDN 240 (379)
T ss_dssp EEEEESS
T ss_pred EEEeCCC
Confidence 7888776
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.019 Score=53.18 Aligned_cols=217 Identities=10% Similarity=-0.033 Sum_probs=110.6
Q ss_pred eeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCC---CCCcceeeee
Q 016421 108 GWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN---HPRCLFGSGS 184 (390)
Q Consensus 108 ~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~---~~r~~~~~~~ 184 (390)
.++.+|+....+..+..++....... ..+..++.+++.++. ...+.+||+.+++.....+.. ........+.
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~--~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~ 176 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKS---VRFIDNTRLAIPLLE--DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETIS 176 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCC---CEESSSSEEEEEBTT--SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCcceEEEEEcCCCCceE---EEEeCCCeEEEEeCC--CCeEEEEECCCCeEeeecCcccccccCCceeEEE
Confidence 56777876665544433332211111 122336777777653 346899999988765533221 1111112222
Q ss_pred --eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCC
Q 016421 185 --LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLET 260 (390)
Q Consensus 185 --~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~ 260 (390)
-++.+++.++.+ ..+.+||..+++....-... .......+.. +..+|+.++.+ ..+..||+.+
T Consensus 177 ~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~ 243 (433)
T 3bws_A 177 IPEHNELWVSQMQA------NAVHVFDLKTLAYKATVDLT-GKWSKILLYDPIRDLVYCSNWIS------EDISVIDRKT 243 (433)
T ss_dssp EGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEECS-SSSEEEEEEETTTTEEEEEETTT------TEEEEEETTT
T ss_pred EcCCCEEEEEECCC------CEEEEEECCCceEEEEEcCC-CCCeeEEEEcCCCCEEEEEecCC------CcEEEEECCC
Confidence 267888887643 45889999887643321111 1111222232 34566665432 3588899988
Q ss_pred CceEEccCCCCCCCCcCCCCCEEEE-ECC-EEEEEec-------CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEE
Q 016421 261 RKWRKIEGMYPNVNRAAQAPPLVAV-VDN-QLYAVEY-------LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK 331 (390)
Q Consensus 261 ~~W~~~~~~~~~~~~~~~~~~~~~~-~~g-~l~v~gg-------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~ 331 (390)
.+....-..... ...++. -+| .+++.+. ..+.|.+||+.+.+-......+... .+.+..
T Consensus 244 ~~~~~~~~~~~~-------~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~ 311 (433)
T 3bws_A 244 KLEIRKTDKIGL-------PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNK-----RHIVSG 311 (433)
T ss_dssp TEEEEECCCCSE-------EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECE-----EEEEEC
T ss_pred CcEEEEecCCCC-------ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCc-----ceEEEC
Confidence 765433222110 011222 244 4554442 2358999999887543332111111 011211
Q ss_pred EeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 332 ACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 332 ~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..++.+|+.++.++ .|.+||+++
T Consensus 312 ~~g~~l~~~~~~~~------~v~v~d~~~ 334 (433)
T 3bws_A 312 NTENKIYVSDMCCS------KIEVYDLKE 334 (433)
T ss_dssp SSTTEEEEEETTTT------EEEEEETTT
T ss_pred CCCCEEEEEecCCC------EEEEEECCC
Confidence 12347888876543 578888876
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.12 Score=44.72 Aligned_cols=231 Identities=11% Similarity=0.074 Sum_probs=115.3
Q ss_pred cEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe---CCEEEEEcccccCCeEEEEECCCCcEeecCCC
Q 016421 98 HWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV---GSELLVFGRELFDFAIWKYSLVFRSWMKCEGM 173 (390)
Q Consensus 98 ~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~ 173 (390)
..+|+.. ....+..||+.......+....... ........++. ++.+|+.+.. ....+.+||+....-..+...
T Consensus 41 g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~-~~~~~p~~i~~~~~~g~l~v~~~~-~~~~i~~~d~~g~~~~~~~~~ 118 (286)
T 1q7f_A 41 NDIIVADTNNHRIQIFDKEGRFKFQFGECGKRD-SQLLYPNRVAVVRNSGDIIVTERS-PTHQIQIYNQYGQFVRKFGAT 118 (286)
T ss_dssp CCEEEEEGGGTEEEEECTTSCEEEEECCBSSST-TCBSSEEEEEEETTTTEEEEEECG-GGCEEEEECTTSCEEEEECTT
T ss_pred CCEEEEECCCCEEEEECCCCcEEEEecccCCCc-ccccCceEEEEEcCCCeEEEEcCC-CCCEEEEECCCCcEEEEecCc
Confidence 4566653 3456888998754333332211000 00111122333 6788887632 135788999654433333221
Q ss_pred CCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccC
Q 016421 174 NHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSL 250 (390)
Q Consensus 174 ~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 250 (390)
.. ....+++. -++.+|+.... ...+.+||+.......+... ........+.+ +|++|+.... .
T Consensus 119 ~~-~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~~~~------~ 184 (286)
T 1q7f_A 119 IL-QHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCS-KHLEFPNGVVVNDKQEIFISDNR------A 184 (286)
T ss_dssp TC-SCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECT-TTCSSEEEEEECSSSEEEEEEGG------G
T ss_pred cC-CCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCC-CccCCcEEEEECCCCCEEEEECC------C
Confidence 11 11223332 25788887542 24588899765544443211 11112233333 5899987543 3
Q ss_pred ceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCC-eEEEEeCCCCceEEccCCCccccCCCccee
Q 016421 251 TCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTN-MVKKYDKLKNTWDVLGRLPVRADLSNGWGL 328 (390)
Q Consensus 251 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~-~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~ 328 (390)
..+.+||+.......+...... .....++. -+|++|+.+...+ .|.+||+....-..+..-...... .+.
T Consensus 185 ~~i~~~~~~g~~~~~~~~~g~~-----~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~---~~i 256 (286)
T 1q7f_A 185 HCVKVFNYEGQYLRQIGGEGIT-----NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQC---FDV 256 (286)
T ss_dssp TEEEEEETTCCEEEEESCTTTS-----CSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCE---EEE
T ss_pred CEEEEEcCCCCEEEEEccCCcc-----CCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcc---eeE
Confidence 4688899866544444321100 01112333 3678999887665 899999866543333211110000 112
Q ss_pred EEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 329 AFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 329 ~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
++.-+++||+... + ..|.+|+...
T Consensus 257 -~~~~~g~l~vs~~-~------~~v~v~~~~~ 280 (286)
T 1q7f_A 257 -ALMDDGSVVLASK-D------YRLYIYRYVQ 280 (286)
T ss_dssp -EEETTTEEEEEET-T------TEEEEEECSC
T ss_pred -EECCCCcEEEECC-C------CeEEEEEccc
Confidence 2234789998853 2 1466776644
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.023 Score=51.58 Aligned_cols=226 Identities=11% Similarity=0.033 Sum_probs=105.1
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH 175 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~ 175 (390)
..+++.+....+..+|..+.+-........ ..+...-..+. .++..++.|+. ...+.+||..+++-... +..
T Consensus 106 ~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~--~~h~~~V~~v~~spdg~~l~sgs~--dg~v~iwd~~~~~~~~~--~~~ 179 (357)
T 4g56_B 106 KGILVASDSGAVELWEILEKESLLVNKFAK--YEHDDIVKTLSVFSDGTQAVSGGK--DFSVKVWDLSQKAVLKS--YNA 179 (357)
T ss_dssp TEEEEEETTSCEEEC--------CCCCEEE--CCCSSCEEEEEECSSSSEEEEEET--TSCEEEEETTTTEEEEE--ECC
T ss_pred CCEEEEECCCEEEEeeccccceeEEEeecc--CCCCCCEEEEEECCCCCEEEEEeC--CCeEEEEECCCCcEEEE--EcC
Confidence 444444455567777776553222111110 01111111222 25555666653 45788999988764332 111
Q ss_pred CCcce-eeee-e-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE---CCEEEEEecccCCCcc
Q 016421 176 PRCLF-GSGS-L-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM---DGKFYVIGGMSSPTVS 249 (390)
Q Consensus 176 ~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~ 249 (390)
..... +++. . +..+++.++.++ .+.+||..+++-...-...........+.. ++.+++.|+.++
T Consensus 180 h~~~v~~v~~s~~~~~~~~s~~~dg------~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~---- 249 (357)
T 4g56_B 180 HSSEVNCVAACPGKDTIFLSCGEDG------RILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG---- 249 (357)
T ss_dssp CSSCEEEEEECTTCSSCEEEEETTS------CEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS----
T ss_pred CCCCEEEEEEccCCCceeeeeccCC------ceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc----
Confidence 11111 2222 1 234666666543 378889887654332222222222233333 356666666432
Q ss_pred CceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CC-EEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcce
Q 016421 250 LTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DN-QLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWG 327 (390)
Q Consensus 250 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g-~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~ 327 (390)
.+..||+.+.+-.. .+... ......++.. ++ ++++.|+.-+.|.+||..+.+-.... ... ..-
T Consensus 250 --~i~~wd~~~~~~~~--~~~~~----~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~-----~~V 314 (357)
T 4g56_B 250 --NVSLVNIKNPDSAQ--TSAVH----SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SHR-----DFV 314 (357)
T ss_dssp --CEEEEESSCGGGCE--EECCC----SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCS-----SCE
T ss_pred --ceeEEECCCCcEeE--EEecc----ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCC-----CCE
Confidence 46778887654211 11110 0011122221 33 56666767788999999887644322 111 111
Q ss_pred eEEEE--eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 328 LAFKA--CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 328 ~~~~~--~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+++. .++.+++.||.++ .|.+|+..+
T Consensus 315 ~~vafsP~d~~~l~s~s~Dg------~v~iW~~~~ 343 (357)
T 4g56_B 315 TGVAWSPLDHSKFTTVGWDH------KVLHHHLPS 343 (357)
T ss_dssp EEEEECSSSTTEEEEEETTS------CEEEEECC-
T ss_pred EEEEEeCCCCCEEEEEcCCC------eEEEEECCC
Confidence 22322 3677888888764 477898765
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.28 Score=48.71 Aligned_cols=117 Identities=14% Similarity=0.091 Sum_probs=71.4
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCc--EeecCCCCCC--------CcceeeeeeCCEEEEEeccCCCCCccceEEEE
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHP--------RCLFGSGSLGSIAIIAGGSDKNGHVLKSAELY 208 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~y 208 (390)
+..++.||+... ...++.+|..|++ |+.-...+.. ....+.++.+++||+... ...+..+
T Consensus 74 ~v~~g~vyv~~~---~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg~l~al 143 (677)
T 1kb0_A 74 VVVDGIMYVSAS---WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DGRLIAL 143 (677)
T ss_dssp EEETTEEEEECG---GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TSEEEEE
T ss_pred EEECCEEEEECC---CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CCEEEEE
Confidence 567899998765 3478899998875 8664432210 112244566888888632 2458999
Q ss_pred ECCCCc--EEEcCC-CCC--CCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc--eEEc
Q 016421 209 DSTTGR--WEMLPS-MHS--PRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKI 266 (390)
Q Consensus 209 d~~t~~--W~~~~~-~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~ 266 (390)
|..+++ |+.-.. -.. .....+.++.++.||+..+.... .....++.||..|++ |+.-
T Consensus 144 D~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 144 DAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEY-GVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp ETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEE
T ss_pred ECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEeccccc-CCCCEEEEEECCCCcEEEEec
Confidence 999886 876422 111 11222344678998886442211 124568999998875 8653
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.14 Score=44.39 Aligned_cols=222 Identities=12% Similarity=0.022 Sum_probs=117.7
Q ss_pred ccEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--CCEEEEEcccccCCeEEEEECCCCcEeecCCC
Q 016421 97 EHWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--GSELLVFGRELFDFAIWKYSLVFRSWMKCEGM 173 (390)
Q Consensus 97 ~~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~ 173 (390)
+..+|+.. ....+..||+. .+...+. ++... .....++. ++.+|+... ....+.+||+. +++......
T Consensus 30 ~g~l~v~~~~~~~v~~~~~~-~~~~~~~-~~~~~----~~~~~i~~~~~g~l~v~~~--~~~~v~~~d~~-g~~~~~~~~ 100 (300)
T 2qc5_A 30 DGKVWFTQHKANKISSLDQS-GRIKEFE-VPTPD----AKVMCLIVSSLGDIWFTEN--GANKIGKLSKK-GGFTEYPLP 100 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEE-CSSTT----CCEEEEEECTTSCEEEEET--TTTEEEEECTT-SCEEEEECS
T ss_pred CCCEEEEcCCCCeEEEECCC-CceEEEE-CCCCC----CcceeEEECCCCCEEEEec--CCCeEEEECCC-CCeEEecCC
Confidence 45577765 35678889988 6555432 12110 01122332 567877642 23578999988 666544321
Q ss_pred CCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccC
Q 016421 174 NHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSL 250 (390)
Q Consensus 174 ~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 250 (390)
.......+++.- ++.+|+.... ...+.+||+. ++..... ++........+.. +|++|+.... .
T Consensus 101 ~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~------~ 166 (300)
T 2qc5_A 101 QPDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQ------N 166 (300)
T ss_dssp STTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT------T
T ss_pred CCCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEecC------C
Confidence 111222333332 5788887532 2358889987 6655432 2212122233333 5788886421 2
Q ss_pred ceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeE
Q 016421 251 TCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLA 329 (390)
Q Consensus 251 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~ 329 (390)
..+.+||+ +++...+.. +... .....++.- +|.||+.....+.+.+||+ +++...... +..... . .+
T Consensus 167 ~~i~~~~~-~g~~~~~~~-~~~~----~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~-~~~~~~---~-~~ 234 (300)
T 2qc5_A 167 NSIGRITN-TGKLEEYPL-PTNA----AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDI-PTPNAR---P-HA 234 (300)
T ss_dssp TEEEEECT-TCCEEEEEC-SSTT----CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC-SSTTCC---E-EE
T ss_pred CeEEEECC-CCcEEEeeC-CCCC----CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEEC-CCCCCC---c-eE
Confidence 45888998 667665432 1110 011123332 5789998766778999998 666665421 211110 1 22
Q ss_pred EEE-eCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016421 330 FKA-CGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 330 ~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
++. -+++||+..... ..|.+||++
T Consensus 235 i~~d~~g~l~v~~~~~------~~i~~~~~~ 259 (300)
T 2qc5_A 235 ITAGKNSEIWFTEWGA------NQIGRITND 259 (300)
T ss_dssp EEECSTTCEEEEETTT------TEEEEECTT
T ss_pred EEECCCCCEEEeccCC------CeEEEECCC
Confidence 322 257788876422 147788873
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.1 Score=45.53 Aligned_cols=193 Identities=14% Similarity=0.018 Sum_probs=102.6
Q ss_pred CEEEEEcccccCCeEEEEECCCCc--EeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEc
Q 016421 143 SELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEML 218 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~ 218 (390)
+.+++.+. ....+.++|+.+++ |+.-..-. .........-++++++.+ ...+..||+ +++ |+.-
T Consensus 5 ~~~lv~~~--~~~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs~--------~~~V~~~d~-~G~~~W~~~ 72 (276)
T 3no2_A 5 QHLLVGGS--GWNKIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFSY--------SKGAKMITR-DGRELWNIA 72 (276)
T ss_dssp CEEEEECT--TCSEEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEEC--------BSEEEEECT-TSCEEEEEE
T ss_pred CcEEEeeC--CCCEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEeC--------CCCEEEECC-CCCEEEEEc
Confidence 45556554 24678889987775 65432210 122223333477888732 245889999 554 7654
Q ss_pred CCCCCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCC-ceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC
Q 016421 219 PSMHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETR-KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL 296 (390)
Q Consensus 219 ~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~ 296 (390)
.+ .....+++.. -+|++++..... ...++.+|+... .|+.-...... .............+|.+++....
T Consensus 73 ~~--~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~-~~~~~~~~v~~~~~G~~lv~~~~ 144 (276)
T 3no2_A 73 AP--AGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIE-RPHAQFRQINKNKKGNYLVPLFA 144 (276)
T ss_dssp CC--TTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCS-SGGGSCSCCEECTTSCEEEEETT
T ss_pred CC--CCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCC-cccccccCceECCCCCEEEEecC
Confidence 32 1111222332 377777764321 235777887443 24321111000 00001111234456777777777
Q ss_pred CCeEEEEeCCCC-ceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016421 297 TNMVKKYDKLKN-TWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 297 ~~~v~~yd~~~~-~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
.+.|.+||++.+ .|+.-.. ... + ......+|.+++.+... ..|..+|+++ ++..|+.-.
T Consensus 145 ~~~v~~~d~~G~~~w~~~~~--~~~-----~-~~~~~~~g~~~v~~~~~------~~v~~~d~~t----G~~~w~~~~ 204 (276)
T 3no2_A 145 TSEVREIAPNGQLLNSVKLS--GTP-----F-SSAFLDNGDCLVACGDA------HCFVQLNLES----NRIVRRVNA 204 (276)
T ss_dssp TTEEEEECTTSCEEEEEECS--SCC-----C-EEEECTTSCEEEECBTT------SEEEEECTTT----CCEEEEEEG
T ss_pred CCEEEEECCCCCEEEEEECC--CCc-----c-ceeEcCCCCEEEEeCCC------CeEEEEeCcC----CcEEEEecC
Confidence 789999999844 3765332 111 1 12333477888877643 1488999997 456788653
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.035 Score=49.12 Aligned_cols=186 Identities=11% Similarity=0.003 Sum_probs=94.3
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH 175 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~ 175 (390)
..++..+....+..+|..+.+......+..... ....+. .++..++.|+. ...+.+||..+.+....-....
T Consensus 110 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~--dg~v~~~d~~~~~~~~~~~~~~ 183 (337)
T 1gxr_A 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP----ACYALAISPDSKVCFSCCS--DGNIAVWDLHNQTLVRQFQGHT 183 (337)
T ss_dssp SEEEEEESSSEEEEEECCCC--EEEEEEECSSS----CEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEECCCS
T ss_pred CEEEEEcCCCcEEEEECCCCCcceeeecccCCC----ceEEEEECCCCCEEEEEeC--CCcEEEEeCCCCceeeeeeccc
Confidence 344444445678888888765432222211110 011122 24555555542 3578899988876433211111
Q ss_pred CCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE-ECCEEEEEecccCCCccCceE
Q 016421 176 PRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCG 253 (390)
Q Consensus 176 ~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v 253 (390)
. ....++. -++..++.|+.+ ..+.+||..+++-...-..+.+ -...+. -+++++++|+.++ .+
T Consensus 184 ~-~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~~~------~i 248 (337)
T 1gxr_A 184 D-GASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHDFTSQ--IFSLGYCPTGEWLAVGMESS------NV 248 (337)
T ss_dssp S-CEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECSSC--EEEEEECTTSSEEEEEETTS------CE
T ss_pred C-ceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeecCCCc--eEEEEECCCCCEEEEEcCCC------cE
Confidence 1 1112222 155566666543 3588999987764332111111 112222 2566666665432 47
Q ss_pred EEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceE
Q 016421 254 EEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWD 311 (390)
Q Consensus 254 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~ 311 (390)
..||..+..-..+...... ...++. -++++++.++..+.+.+||..+++-.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 249 EVLHVNKPDKYQLHLHESC-------VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EEEETTSSCEEEECCCSSC-------EEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEECCCCCeEEEcCCccc-------eeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 7899887764433221110 111222 25677777777889999999887644
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.095 Score=44.87 Aligned_cols=183 Identities=12% Similarity=-0.018 Sum_probs=96.4
Q ss_pred CCEEEE-EcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 142 GSELLV-FGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~-~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.+|+ ... ....+.+||+.+........... ....+++.. ++.+|+... . ..+.+||+.++....+.
T Consensus 34 ~g~l~v~~~~--~~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~-~------~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 34 AGNVYVTSEG--MYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDF-N------NRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp TCCEEEEECS--SSCEEEEECC-----EECCCCSC-CSCCCEEECTTCCEEEEET-T------TEEEEECTTCSCCEECC
T ss_pred CCCEEEEccC--CCCcEEEecCCCcccceEeeCCc-CCcceeEECCCCCEEEEcC-C------CEEEEEeCCCceEeeee
Confidence 567887 432 23578889987766544332111 112233332 567888754 1 35889998877655443
Q ss_pred CCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEecC
Q 016421 220 SMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEYL 296 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg~ 296 (390)
... ......+.+ +|++|+.... ...+.+||..+........... .....++.. +|++|+.+..
T Consensus 104 ~~~--~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~~------~~p~~i~~~~~g~l~v~~~~ 169 (270)
T 1rwi_B 104 FDG--LNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFTGL------NDPDGVAVDNSGNVYVTDTD 169 (270)
T ss_dssp CCS--CSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCCSC------CSCCCEEECTTCCEEEEEGG
T ss_pred cCC--cCCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeeccccC------CCceeEEEeCCCCEEEEECC
Confidence 211 112223333 6788887532 2357778877665543321110 011124433 5789998877
Q ss_pred CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 297 TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 297 ~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.|.+||+.+..-........ . .-.+++.. +|.||+.....+ .|.+|+++.
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~--~----~p~~i~~d~~g~l~v~~~~~~------~v~~~~~~~ 222 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLPFTDI--T----APWGIAVDEAGTVYVTEHNTN------QVVKLLAGS 222 (270)
T ss_dssp GTEEEEECTTTCCEEECCCSSC--C----SEEEEEECTTCCEEEEETTTS------CEEEECTTC
T ss_pred CCEEEEEecCCCceEeecccCC--C----CceEEEECCCCCEEEEECCCC------cEEEEcCCC
Confidence 7899999998776443321110 1 01233333 568888875331 377888866
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.94 E-value=0.079 Score=47.63 Aligned_cols=241 Identities=11% Similarity=0.046 Sum_probs=114.1
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR 177 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r 177 (390)
..++..+....+..||....++..+..+...... .....+..++.+++.|+. ...+.+||..++++.....+....
T Consensus 21 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~ 96 (372)
T 1k8k_C 21 TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ--VTGVDWAPDSNRIVTCGT--DRNAYVWTLKGRTWKPTLVILRIN 96 (372)
T ss_dssp SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSC--EEEEEEETTTTEEEEEET--TSCEEEEEEETTEEEEEEECCCCS
T ss_pred CEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCc--ccEEEEeCCCCEEEEEcC--CCeEEEEECCCCeeeeeEEeecCC
Confidence 3444444567788899888765444333321111 001112224555555553 357888998888765443222222
Q ss_pred cceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCc-EEEcCCCCCC-CcCceEEEE--CCEEEEEecccCCCccCc
Q 016421 178 CLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGR-WEMLPSMHSP-RRLCSGFFM--DGKFYVIGGMSSPTVSLT 251 (390)
Q Consensus 178 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 251 (390)
.....+.+ ++..++.|+.++ .+.+||..++. |........+ ......+.. +++.++.|+.++
T Consensus 97 ~~v~~~~~~~~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------ 164 (372)
T 1k8k_C 97 RAARCVRWAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF------ 164 (372)
T ss_dssp SCEEEEEECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS------
T ss_pred CceeEEEECCCCCEEEEEeCCC------EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC------
Confidence 22222222 456666666442 36666666553 3222211111 112222222 566667666542
Q ss_pred eEEEEeCCCCc---------e-------EEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEcc
Q 016421 252 CGEEFDLETRK---------W-------RKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 252 ~v~~yd~~~~~---------W-------~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~ 314 (390)
.+..||+.... | ..+..+... ......++. -++..++.++..+.+.+||..+.+-...
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~- 239 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS----CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT- 239 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC----SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE-
T ss_pred CEEEEEcccccccccccccccccccchhhheEecCCC----CCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEE-
Confidence 46678854211 1 111111110 000111222 2566777777778999999987653322
Q ss_pred CCCccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016421 315 RLPVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 315 ~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
+..... .-.++. .-++++++.| .++ .|.+|+..+ ...+|..+..+
T Consensus 240 -~~~~~~----~v~~~~~~~~~~~l~~~-~d~------~i~i~~~~~----~~~~~~~~~~~ 285 (372)
T 1k8k_C 240 -LASETL----PLLAVTFITESSLVAAG-HDC------FPVLFTYDS----AAGKLSFGGRL 285 (372)
T ss_dssp -EECSSC----CEEEEEEEETTEEEEEE-TTS------SCEEEEEET----TTTEEEECCCC
T ss_pred -EccCCC----CeEEEEEecCCCEEEEE-eCC------eEEEEEccC----cCceEEEeecc
Confidence 111110 001222 2367766666 332 366777765 11257665443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.91 E-value=0.17 Score=45.39 Aligned_cols=195 Identities=11% Similarity=0.108 Sum_probs=92.4
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCc-EeecCCCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRS-WMKCEGMN 174 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~-W~~~~~~~ 174 (390)
..++..+....+..+|..+.++.....+..... ....+. .++..++.|+. ...+.+||..+.. |.......
T Consensus 65 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~ 138 (372)
T 1k8k_C 65 NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR----AARCVRWAPNEKKFAVGSG--SRVISICYFEQENDWWVCKHIK 138 (372)
T ss_dssp TEEEEEETTSCEEEEEEETTEEEEEEECCCCSS----CEEEEEECTTSSEEEEEET--TSSEEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEcCCCeEEEEECCCCeeeeeEEeecCCC----ceeEEEECCCCCEEEEEeC--CCEEEEEEecCCCcceeeeeee
Confidence 344444445677888887776543322211110 111222 24555555553 3456677666543 32221111
Q ss_pred C--CCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCc---------E-------EEcCCCCCCCcCceEEEE--
Q 016421 175 H--PRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGR---------W-------EMLPSMHSPRRLCSGFFM-- 233 (390)
Q Consensus 175 ~--~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~---------W-------~~~~~~~~~r~~~~~~~~-- 233 (390)
. ...-.+++.. ++..++.|+.++ .+.+||..... | +.+..+.........+..
T Consensus 139 ~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 212 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPNSVLLAAGSCDF------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 212 (372)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTS------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred cccCCCeeEEEEcCCCCEEEEEcCCC------CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC
Confidence 1 1111122222 566667776543 47788854211 1 111111111112222333
Q ss_pred CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCC--CceE
Q 016421 234 DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLK--NTWD 311 (390)
Q Consensus 234 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~--~~W~ 311 (390)
++..++.|+.+ ..+..||..+.+-...-..... . .......-++++++.| ..+.+.+||..+ ++|.
T Consensus 213 ~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~----~-v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~ 280 (372)
T 1k8k_C 213 NGSRVAWVSHD------STVCLADADKKMAVATLASETL----P-LLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLS 280 (372)
T ss_dssp SSSEEEEEETT------TEEEEEEGGGTTEEEEEECSSC----C-EEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEE
T ss_pred CCCEEEEEeCC------CEEEEEECCCCceeEEEccCCC----C-eEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEE
Confidence 55566666543 3477889877653321111110 0 0011223477866666 677889999888 8898
Q ss_pred EccCC
Q 016421 312 VLGRL 316 (390)
Q Consensus 312 ~v~~~ 316 (390)
.+..+
T Consensus 281 ~~~~~ 285 (372)
T 1k8k_C 281 FGGRL 285 (372)
T ss_dssp ECCCC
T ss_pred Eeecc
Confidence 76544
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.19 Score=43.52 Aligned_cols=220 Identities=10% Similarity=0.035 Sum_probs=115.0
Q ss_pred ccEEEEEeC-CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--CCEEEEEcccccCCeEEEEECCCCcEeecCCC
Q 016421 97 EHWVYLVCD-PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--GSELLVFGRELFDFAIWKYSLVFRSWMKCEGM 173 (390)
Q Consensus 97 ~~~l~~~~~-~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~ 173 (390)
+..+|+... ...+..||+. .+...+. ++... .....++. ++.+|+... ....+++||+. ++.......
T Consensus 72 ~g~l~v~~~~~~~v~~~d~~-g~~~~~~-~~~~~----~~~~~i~~~~~g~l~v~~~--~~~~i~~~~~~-g~~~~~~~~ 142 (300)
T 2qc5_A 72 LGDIWFTENGANKIGKLSKK-GGFTEYP-LPQPD----SGPYGITEGLNGDIWFTQL--NGDRIGKLTAD-GTIYEYDLP 142 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEE-CSSTT----CCEEEEEECSTTCEEEEET--TTTEEEEECTT-SCEEEEECS
T ss_pred CCCEEEEecCCCeEEEECCC-CCeEEec-CCCCC----CCCccceECCCCCEEEEcc--CCCeEEEECCC-CCEEEccCC
Confidence 345666653 4668889988 5554332 11110 01122332 567887642 23478899987 665443211
Q ss_pred CCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccC
Q 016421 174 NHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSL 250 (390)
Q Consensus 174 ~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 250 (390)
.......+++. -++++|+.... ...+.+||+ +++...+. ++........+.. +|.||+.... .
T Consensus 143 ~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~------~ 208 (300)
T 2qc5_A 143 NKGSYPAFITLGSDNALWFTENQ------NNSIGRITN-TGKLEEYP-LPTNAAAPVGITSGNDGALWFVEIM------G 208 (300)
T ss_dssp STTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT------T
T ss_pred CCCCCceeEEECCCCCEEEEecC------CCeEEEECC-CCcEEEee-CCCCCCCcceEEECCCCCEEEEccC------C
Confidence 11112223333 25678886431 245889998 67766542 2222222333333 5788886422 2
Q ss_pred ceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeE
Q 016421 251 TCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLA 329 (390)
Q Consensus 251 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~ 329 (390)
..+.+||+ ++++..... +... .....++. -+|+||+.....+.|.+||+ +++..... ++...... .+
T Consensus 209 ~~i~~~~~-~g~~~~~~~-~~~~----~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-~~~~~~~~----~~ 276 (300)
T 2qc5_A 209 NKIGRITT-TGEISEYDI-PTPN----ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQ-LQTENAEP----HG 276 (300)
T ss_dssp TEEEEECT-TCCEEEEEC-SSTT----CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEE-CCSTTCCC----CC
T ss_pred CEEEEEcC-CCcEEEEEC-CCCC----CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEE-CCccCCcc----ce
Confidence 35788998 666665432 1110 01112332 25789998866789999998 45655432 22111111 12
Q ss_pred EEE-eCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016421 330 FKA-CGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 330 ~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
++. -+|+||+.+. . .|..|||+
T Consensus 277 i~~~~~g~l~v~~~-~-------~i~~~~p~ 299 (300)
T 2qc5_A 277 ITFGKDGSVWFALK-C-------KIGKLNLN 299 (300)
T ss_dssp EEECTTSCEEEECS-S-------EEEEEEEC
T ss_pred eEeCCCCCEEEEcc-C-------ceEEeCCC
Confidence 333 3678888664 2 37777774
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.22 Score=50.36 Aligned_cols=187 Identities=5% Similarity=-0.001 Sum_probs=103.7
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccCCeEEEEECCCCcEeecCCCCC-
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH- 175 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~- 175 (390)
..|++......+..||+.+.++..+.....+ ...-..+... ++.|++... .-+++||+.+++|......+.
T Consensus 418 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~---~~~v~~i~~d~~g~lwigt~----~Gl~~~~~~~~~~~~~~~~~~~ 490 (781)
T 3v9f_A 418 GNLWFGTYLGNISYYNTRLKKFQIIELEKNE---LLDVRVFYEDKNKKIWIGTH----AGVFVIDLASKKVIHHYDTSNS 490 (781)
T ss_dssp SCEEEEETTEEEEEECSSSCEEEECCSTTTC---CCCEEEEEECTTSEEEEEET----TEEEEEESSSSSCCEEECTTTS
T ss_pred CCEEEEeccCCEEEEcCCCCcEEEeccCCCC---CCeEEEEEECCCCCEEEEEC----CceEEEeCCCCeEEecccCccc
Confidence 4455543346788899998888776532110 0010112222 467766432 468999999998866543221
Q ss_pred ---CCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCC-CCCcCceEEEE--CCEEEEEecccCCCc
Q 016421 176 ---PRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH-SPRRLCSGFFM--DGKFYVIGGMSSPTV 248 (390)
Q Consensus 176 ---~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~ 248 (390)
.....++.. -++.|++. ... .-+.+||+.+++++...... .+......+.. +|.|++...
T Consensus 491 ~~~~~~i~~i~~d~~g~lWig-t~~------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~------ 557 (781)
T 3v9f_A 491 QLLENFVRSIAQDSEGRFWIG-TFG------GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG------ 557 (781)
T ss_dssp SCSCSCEEEEEECTTCCEEEE-ESS------SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET------
T ss_pred ccccceeEEEEEcCCCCEEEE-EcC------CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC------
Confidence 111112222 24666664 221 22788999999988764311 11111122222 567777532
Q ss_pred cCceE-EEEeCCCCceEEccC---CCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEcc
Q 016421 249 SLTCG-EEFDLETRKWRKIEG---MYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 249 ~~~~v-~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~ 314 (390)
..+ .+||+.++++..... ++.. ...+++. .+|.|++.+ .+.+.+||+++.++....
T Consensus 558 --~Glv~~~d~~~~~~~~~~~~~gl~~~------~i~~i~~d~~g~lW~~t--~~Gl~~~~~~~~~~~~~~ 618 (781)
T 3v9f_A 558 --EGLVCFPSARNFDYQVFQRKEGLPNT------HIRAISEDKNGNIWAST--NTGISCYITSKKCFYTYD 618 (781)
T ss_dssp --TEEEEESCTTTCCCEEECGGGTCSCC------CCCEEEECSSSCEEEEC--SSCEEEEETTTTEEEEEC
T ss_pred --CCceEEECCCCCcEEEccccCCCCCc------eEEEEEECCCCCEEEEc--CCceEEEECCCCceEEec
Confidence 235 789999998876542 2221 1112332 357888875 356999999999887764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.04 Score=49.79 Aligned_cols=226 Identities=10% Similarity=0.033 Sum_probs=107.2
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH 175 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~ 175 (390)
..+...+....+..+|..+.+-........ ..+...-..++ .++..++.|+. ...+.+||..+++-... +..
T Consensus 94 ~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~--~~H~~~V~~v~~spdg~~l~sgs~--d~~i~iwd~~~~~~~~~--~~~ 167 (344)
T 4gqb_B 94 RGILVASDSGAVELWELDENETLIVSKFCK--YEHDDIVSTVSVLSSGTQAVSGSK--DICIKVWDLAQQVVLSS--YRA 167 (344)
T ss_dssp TEEEEEETTSEEEEEEECTTSSCEEEEEEE--ECCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEE--ECC
T ss_pred CeEEEEECCCEEEEEeccCCCceeEeeccc--cCCCCCEEEEEECCCCCEEEEEeC--CCeEEEEECCCCcEEEE--EcC
Confidence 344444445667778877654211110000 00111111222 25566666653 35788999988754322 111
Q ss_pred CCcceeeeee---CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE---CCEEEEEecccCCCcc
Q 016421 176 PRCLFGSGSL---GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM---DGKFYVIGGMSSPTVS 249 (390)
Q Consensus 176 ~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~ 249 (390)
.......+.+ +..+++.|+.++ .+.++|..+++-...-...........+.. ++++++.|+.++
T Consensus 168 h~~~V~~~~~~~~~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg---- 237 (344)
T 4gqb_B 168 HAAQVTCVAASPHKDSVFLSCSEDN------RILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG---- 237 (344)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTS------CEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS----
T ss_pred cCCceEEEEecCCCCCceeeecccc------ccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC----
Confidence 1111112222 335677776543 478899988764332111111111222222 456777776542
Q ss_pred CceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CC-EEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcce
Q 016421 250 LTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DN-QLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWG 327 (390)
Q Consensus 250 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g-~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~ 327 (390)
.+..||+.+.+- +..+... ......++.. ++ ++++.|+.-+.|.+||..+++-..... +...-
T Consensus 238 --~v~~wd~~~~~~--~~~~~~h----~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~-------H~~~V 302 (344)
T 4gqb_B 238 --TVSLVDTKSTSC--VLSSAVH----SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQA-------HRDFV 302 (344)
T ss_dssp --EEEEEESCC--C--CEEEECC----SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECC-------CSSCE
T ss_pred --cEEEEECCCCcE--EEEEcCC----CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcC-------CCCCE
Confidence 477789876542 1111110 1011122222 34 566667777889999998876333211 11111
Q ss_pred eEEEE--eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 328 LAFKA--CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 328 ~~~~~--~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+++. .+..|++.||.++ .|.+|+..+
T Consensus 303 ~~v~~sp~~~~llas~s~D~------~v~~w~v~~ 331 (344)
T 4gqb_B 303 RDATWSPLNHSLLTTVGWDH------QVVHHVVPT 331 (344)
T ss_dssp EEEEECSSSTTEEEEEETTS------CEEEEECCC
T ss_pred EEEEEeCCCCeEEEEEcCCC------eEEEEECCC
Confidence 22222 2456777788764 377888766
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.32 Score=49.23 Aligned_cols=234 Identities=6% Similarity=0.049 Sum_probs=122.7
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCc---ccCCCCeeEEEe-CCE-EEEEcccccCCeEEEEECCCCcEeecCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDE---CFNHADKESLAV-GSE-LLVFGRELFDFAIWKYSLVFRSWMKCEG 172 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~---~~~~~~~~~~~~-~~~-iy~~Gg~~~~~~~~~yd~~t~~W~~~~~ 172 (390)
..|++......+..||+.+.++..+...+... .....-.+++.. ++. |++.. ...-+++||+.++++.....
T Consensus 368 g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt---~~~Gl~~~d~~~~~~~~~~~ 444 (795)
T 4a2l_A 368 KNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT---HAGGLSILHRNSGQVENFNQ 444 (795)
T ss_dssp SCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE---TTTEEEEEETTTCCEEEECT
T ss_pred CCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe---CcCceeEEeCCCCcEEEeec
Confidence 44555444457888999988887654322100 001111122222 455 66632 12358899999998877643
Q ss_pred CCC---CCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCC--C--CCcCceEEEE--CCEEEEEec
Q 016421 173 MNH---PRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH--S--PRRLCSGFFM--DGKFYVIGG 242 (390)
Q Consensus 173 ~~~---~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~--~--~r~~~~~~~~--~~~iyv~GG 242 (390)
... ...-.+.... ++.|++... ..+.+||+.+++|+...... . .......+.. +|.|++...
T Consensus 445 ~~~~l~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~ 516 (795)
T 4a2l_A 445 RNSQLVNENVYAILPDGEGNLWLGTL--------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE 516 (795)
T ss_dssp TTSCCSCSCEEEEEECSSSCEEEEES--------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES
T ss_pred CCCCcCCCeeEEEEECCCCCEEEEec--------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC
Confidence 111 1111122222 466666432 23789999999998875331 1 1111122222 567777532
Q ss_pred ccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccC---CCc
Q 016421 243 MSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGR---LPV 318 (390)
Q Consensus 243 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~---~~~ 318 (390)
..+.+||+.++++ ..................++. .+|.|++... +.+.+||+.++++..... +|.
T Consensus 517 --------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~--~Gl~~~d~~~~~~~~~~~~~gl~~ 585 (795)
T 4a2l_A 517 --------EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR--EGFYCFNEKDKQIKRYNTTNGLPN 585 (795)
T ss_dssp --------SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES--SCEEEEETTTTEEEEECGGGTCSC
T ss_pred --------CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC--CCceeECCCCCcEEEeCCCCCCch
Confidence 2377899998888 443211100000101111222 3577887653 369999999998887642 222
Q ss_pred cccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016421 319 RADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 319 ~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
.. -.+++.. +|+|++.+. . -+.+|++++ .+++...
T Consensus 586 ~~------i~~i~~d~~g~lWi~t~-~-------Gl~~~~~~~------~~~~~~~ 621 (795)
T 4a2l_A 586 NV------VYGILEDSFGRLWLSTN-R-------GISCFNPET------EKFRNFT 621 (795)
T ss_dssp SC------EEEEEECTTSCEEEEET-T-------EEEEEETTT------TEEEEEC
T ss_pred hh------eEEEEECCCCCEEEEcC-C-------ceEEEcCCC------CcEEEcC
Confidence 11 1233332 577887763 2 367888877 4666554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.42 Score=46.65 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=68.5
Q ss_pred EEeCCEEEEEcccccCCeEEEEEC-CCCc--EeecCCCCC-----CCc---ceeeee--eCCE----EEEEeccCCCCCc
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSL-VFRS--WMKCEGMNH-----PRC---LFGSGS--LGSI----AIIAGGSDKNGHV 201 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~-~t~~--W~~~~~~~~-----~r~---~~~~~~--~~~~----lyv~GG~~~~~~~ 201 (390)
+..++.||+.+.. ...++.+|. .+++ |+.-...+. ..+ ..+.++ .+++ ||+...
T Consensus 59 ~v~~g~vyv~~~~--~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~------- 129 (599)
T 1w6s_A 59 LVVDGKMYIHTSF--PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL------- 129 (599)
T ss_dssp EEETTEEEEECST--TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-------
T ss_pred EEECCEEEEEeCC--CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-------
Confidence 5668999987642 357899999 7774 876443221 111 123344 5666 877532
Q ss_pred cceEEEEECCCCc--EEEcCCCCCC--CcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc--eEEc
Q 016421 202 LKSAELYDSTTGR--WEMLPSMHSP--RRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKI 266 (390)
Q Consensus 202 ~~~~~~yd~~t~~--W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~ 266 (390)
...+..+|..+++ |+.-..-+.. ....+-++.+++||+-.+.... .....++.||..|.+ |+.-
T Consensus 130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~-g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAEL-GVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGG-TCCCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEeccccc-CCCCeEEEEECCCCcEEEEEc
Confidence 2458899999886 8753211111 1122334578998875432110 123568899998875 8754
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.18 Score=46.18 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=97.3
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH 175 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~ 175 (390)
..++..+....+..+|..+.+........... .-..+. .++.+++.|+. ...+.+||..+.+....-. .
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~-----~v~~v~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~--~ 174 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAETDEST-----YVASVKWSHDGSFLSVGLG--NGLVDIYDVESQTKLRTMA--G 174 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECCTTC-----CEEEEEECTTSSEEEEEET--TSCEEEEETTTCCEEEEEC--C
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeeecCCCC-----CEEEEEECCCCCEEEEECC--CCeEEEEECcCCeEEEEec--C
Confidence 44556566778888999887665443322111 011222 25555566543 3578899988776433211 1
Q ss_pred CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceE
Q 016421 176 PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCG 253 (390)
Q Consensus 176 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 253 (390)
..........++.+++.|+.+ ..+.+||..+..-.. ..+.........+.. ++.+++.|+.++ .+
T Consensus 175 ~~~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~------~v 241 (401)
T 4aez_A 175 HQARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQI-GTLQGHSSEVCGLAWRSDGLQLASGGNDN------VV 241 (401)
T ss_dssp CSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTSSEEEEEETTS------CE
T ss_pred CCCceEEEEECCCEEEEEcCC------CCEEEEecccCccee-eEEcCCCCCeeEEEEcCCCCEEEEEeCCC------eE
Confidence 222223333466667777654 358889987433111 011111112222222 667777776543 47
Q ss_pred EEEeCCCCceEE-ccCCCCCCCCcCCCCCEEEEE--CCEEEEEec--CCCeEEEEeCCCCceEE
Q 016421 254 EEFDLETRKWRK-IEGMYPNVNRAAQAPPLVAVV--DNQLYAVEY--LTNMVKKYDKLKNTWDV 312 (390)
Q Consensus 254 ~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg--~~~~v~~yd~~~~~W~~ 312 (390)
..||..+.+-.. +.... .....++.. +..+++.|+ ..+.+..||..+.+-..
T Consensus 242 ~iwd~~~~~~~~~~~~~~-------~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~ 298 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHN-------AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN 298 (401)
T ss_dssp EEEETTCSSEEEEECCCS-------SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE
T ss_pred EEccCCCCCccEEecCCc-------ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE
Confidence 789998755332 11111 111233333 345777764 57889999998776433
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00057 Score=61.79 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=38.8
Q ss_pred CCCCCCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCc
Q 016421 43 SDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYL 86 (390)
Q Consensus 43 ~~~~~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~ 86 (390)
+...|..||+|++.+|+.+|+..++.+++.|||+|+.+..++.+
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~ 48 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence 45678999999999999999999999999999999999877654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.11 Score=50.29 Aligned_cols=291 Identities=13% Similarity=0.021 Sum_probs=134.4
Q ss_pred CCChHHHHHHHhhhcccc----chhhhHhhcHHHHHHhhcCCchhhhhhcCccccEEEEEe-CCCeeEEEecCCCceeeC
Q 016421 48 PGLVDDVALNCLAFACTS----DYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVC-DPRGWEAFDPMKKKWMAL 122 (390)
Q Consensus 48 ~~LP~dl~~~iL~rlp~~----~l~~~~~V~k~w~~l~~s~~~~~~r~~~~~~~~~l~~~~-~~~~~~~~d~~~~~W~~l 122 (390)
..|.++=+..+.++|-.. .-..+..+.+.|..+..-..........-.....+|+.. ....+..+|..+.+-...
T Consensus 95 ~~ls~~ei~~l~~yl~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~ 174 (543)
T 1nir_A 95 GELSKEQITLMAKYIQHTPPQPPEWGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV 174 (543)
T ss_dssp TSSCHHHHHHHHHHTTSCCCBCCCCCHHHHHHHCEESSCGGGSCSSCCSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEE
T ss_pred cCCCHHHHHHHHHHHHhcccCCCccchhhhhhhhccccccccCCcccccccCCCCEEEEEEcCCCeEEEEECCCceEEEE
Confidence 467888777777765321 112233333444322211000000000111245666664 356788889887654321
Q ss_pred CCCCCCcccCCCCeeE-EEe-CCEEEEEcccccCCeEEEEEC--CCCcEeecCCCCCCCcceeeeee-----CC-EEEEE
Q 016421 123 PKIPCDECFNHADKES-LAV-GSELLVFGRELFDFAIWKYSL--VFRSWMKCEGMNHPRCLFGSGSL-----GS-IAIIA 192 (390)
Q Consensus 123 ~~~p~~~~~~~~~~~~-~~~-~~~iy~~Gg~~~~~~~~~yd~--~t~~W~~~~~~~~~r~~~~~~~~-----~~-~lyv~ 192 (390)
++..... +.+ +.. +..+|+.+.. ..+.+||. .+.+-. ..++.......++.- ++ .+|+.
T Consensus 175 --i~~g~~~----~~v~~spdg~~l~v~~~d---~~V~v~D~~~~t~~~~--~~i~~g~~p~~va~sp~~~~dg~~l~v~ 243 (543)
T 1nir_A 175 --IDTGYAV----HISRMSASGRYLLVIGRD---ARIDMIDLWAKEPTKV--AEIKIGIEARSVESSKFKGYEDRYTIAG 243 (543)
T ss_dssp --EECSTTE----EEEEECTTSCEEEEEETT---SEEEEEETTSSSCEEE--EEEECCSEEEEEEECCSTTCTTTEEEEE
T ss_pred --EecCccc----ceEEECCCCCEEEEECCC---CeEEEEECcCCCCcEE--EEEecCCCcceEEeCCCcCCCCCEEEEE
Confidence 1111111 112 222 4566666543 78999999 665432 222222222222222 34 56655
Q ss_pred eccCCCCCccceEEEEECCCCcEEE-cC--CC--------CCCCcCceEEEE---CCEEEEEecccCCCccCceEEEEeC
Q 016421 193 GGSDKNGHVLKSAELYDSTTGRWEM-LP--SM--------HSPRRLCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFDL 258 (390)
Q Consensus 193 GG~~~~~~~~~~~~~yd~~t~~W~~-~~--~~--------~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~ 258 (390)
... ...+.++|..+.+-.. ++ .+ +.++ ...+.. ++.+|+.... ...+..+|.
T Consensus 244 ~~~------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~--v~~i~~s~~~~~~~vs~~~------~g~i~vvd~ 309 (543)
T 1nir_A 244 AYW------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR--VAAIIASHEHPEFIVNVKE------TGKVLLVNY 309 (543)
T ss_dssp EEE------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC--EEEEEECSSSSEEEEEETT------TTEEEEEEC
T ss_pred Ecc------CCeEEEEeccccccceeecccCcccCccccccCCc--eEEEEECCCCCEEEEEECC------CCeEEEEEe
Confidence 322 3457889988776433 21 11 1111 122222 3455554321 346778888
Q ss_pred CCCceEEccCCCCCCCCcCCCCCEEE-EECCE-EEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-CC
Q 016421 259 ETRKWRKIEGMYPNVNRAAQAPPLVA-VVDNQ-LYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-GN 335 (390)
Q Consensus 259 ~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~g~-l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~~ 335 (390)
.+.+-..+..++.. +....++ .-+|+ +|+.+...+.|.++|..+++-... ++.....+.+.+..++.- ++
T Consensus 310 ~~~~~l~~~~i~~~-----~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~--i~~g~~ph~g~g~~~~~p~~g 382 (543)
T 1nir_A 310 KDIDNLTVTSIGAA-----PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL--VDVGKTPHPGRGANFVHPKYG 382 (543)
T ss_dssp TTSSSCEEEEEECC-----SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE--EECSSSBCCTTCEEEEETTTE
T ss_pred cCCCcceeEEeccC-----cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEe--eccCCCCCCCCCcccCCCCCc
Confidence 76542111111111 1111122 33555 555555678999999998864432 221111111223333222 37
Q ss_pred EEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccC
Q 016421 336 ELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQ 376 (390)
Q Consensus 336 ~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p 376 (390)
.+|+.+.... ..|.+||.+++..+ ...|+.+..++
T Consensus 383 ~~~~s~~~~d-----~~V~v~d~~~~~~~-~~~~~~v~~l~ 417 (543)
T 1nir_A 383 PVWSTSHLGD-----GSISLIGTDPKNHP-QYAWKKVAELQ 417 (543)
T ss_dssp EEEEEEBSSS-----SEEEEEECCTTTCT-TTBTSEEEEEE
T ss_pred cEEEeccCCC-----ceEEEEEeCCCCCc-hhcCeEEEEEE
Confidence 7888774321 15778888762111 12488777654
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00046 Score=60.04 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=39.4
Q ss_pred CCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCchhh
Q 016421 47 LPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGL 89 (390)
Q Consensus 47 ~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~~~ 89 (390)
+..||+|++..||++|++++|.++..|||+|+.+..++.+.+.
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~ 47 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRY 47 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 5679999999999999999999999999999999999887653
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.48 Score=45.97 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=70.0
Q ss_pred EEeCCEEEEEcccccCCeEEEEEC-CCCc--EeecCCCCCC--------CcceeeeeeCCEEEEEeccCCCCCccceEEE
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSL-VFRS--WMKCEGMNHP--------RCLFGSGSLGSIAIIAGGSDKNGHVLKSAEL 207 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~-~t~~--W~~~~~~~~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 207 (390)
+..++.||+.... ...++.+|. .+++ |+.-...... ....+.++.+++||+... ...+..
T Consensus 59 ~v~~g~vyv~~~~--~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~a 129 (571)
T 2ad6_A 59 LVIGDMMYVHSAF--PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------NGHLLA 129 (571)
T ss_dssp EEETTEEEEECST--TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEEE
T ss_pred EEECCEEEEEeCC--CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------CCEEEE
Confidence 5678999987642 357899999 7764 8764332210 011234566889988632 245899
Q ss_pred EECCCCc--EEEc-CCCCCC-CcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc--eEEc
Q 016421 208 YDSTTGR--WEML-PSMHSP-RRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKI 266 (390)
Q Consensus 208 yd~~t~~--W~~~-~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~ 266 (390)
+|..+++ |+.- ...+.. ....+-++.++.||+..+.... .....++.||..+.+ |+.-
T Consensus 130 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 130 LDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAEL-GVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGG-TCCCEEEEEETTTCCEEEEEE
T ss_pred EECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCcc-CCCCEEEEEECCCCcEEEEEc
Confidence 9999885 8753 221111 1122334578999886432110 113568899998764 8643
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.14 Score=47.58 Aligned_cols=178 Identities=10% Similarity=-0.051 Sum_probs=95.2
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeee-eCC-EEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGS-IAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGF 231 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~ 231 (390)
...++++|..+++...+...+.. ....+. -++ .|++.+..++ ...++++|..++..+.+..-.. .....
T Consensus 202 ~~~i~~~d~~tg~~~~l~~~~~~--~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~~~~---~~~~~ 272 (415)
T 2hqs_A 202 RSALVIQTLANGAVRQVASFPRH--NGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRS---NNTEP 272 (415)
T ss_dssp SCEEEEEETTTCCEEEEECCSSC--EEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCCCSS---CEEEE
T ss_pred CcEEEEEECCCCcEEEeecCCCc--ccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcCCCC---cccce
Confidence 35899999999887665443221 112221 144 4555554332 3569999999988776643221 12222
Q ss_pred EE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEE-EEECCEEEEEecC---CCeEEEEeC
Q 016421 232 FM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLV-AVVDNQLYAVEYL---TNMVKKYDK 305 (390)
Q Consensus 232 ~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~g~l~v~gg~---~~~v~~yd~ 305 (390)
.. +|+..++++... ....++.+|+.+.+-..+..... ....+ ..-+|+.++++.. ...++.||.
T Consensus 273 ~~spdg~~l~~~s~~~---g~~~i~~~d~~~~~~~~l~~~~~-------~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 273 TWFPDSQNLAFTSDQA---GRPQVYKVNINGGAPQRITWEGS-------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp EECTTSSEEEEEECTT---SSCEEEEEETTSSCCEECCCSSS-------EEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred EECCCCCEEEEEECCC---CCcEEEEEECCCCCEEEEecCCC-------cccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence 22 565444443221 13468889998877555432211 00011 1235554444332 358999999
Q ss_pred CCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 306 LKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 306 ~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+++...+..-. . .... ...-+++.+++++.++ ....+++||.+.
T Consensus 343 ~~~~~~~l~~~~---~---~~~~-~~spdg~~l~~~s~~~---~~~~l~~~d~~g 387 (415)
T 2hqs_A 343 ATGGVQVLSSTF---L---DETP-SLAPNGTMVIYSSSQG---MGSVLNLVSTDG 387 (415)
T ss_dssp TTCCEEECCCSS---S---CEEE-EECTTSSEEEEEEEET---TEEEEEEEETTS
T ss_pred CCCCEEEecCCC---C---cCCe-EEcCCCCEEEEEEcCC---CccEEEEEECCC
Confidence 998887664322 1 1111 2223566666665432 234688999876
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.25 Score=45.30 Aligned_cols=217 Identities=10% Similarity=0.068 Sum_probs=108.2
Q ss_pred CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcE--eecCCCCCCCcceee
Q 016421 105 DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSW--MKCEGMNHPRCLFGS 182 (390)
Q Consensus 105 ~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W--~~~~~~~~~r~~~~~ 182 (390)
....+..+|..+.+.... +.. +......+..++.+++.|+. ...+.+||..+..- ..+..... .-.++
T Consensus 154 ~dg~i~iwd~~~~~~~~~--~~~----~~~~v~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~ 223 (401)
T 4aez_A 154 GNGLVDIYDVESQTKLRT--MAG----HQARVGCLSWNRHVLSSGSR--SGAIHHHDVRIANHQIGTLQGHSS--EVCGL 223 (401)
T ss_dssp TTSCEEEEETTTCCEEEE--ECC----CSSCEEEEEEETTEEEEEET--TSEEEEEETTSSSCEEEEEECCSS--CEEEE
T ss_pred CCCeEEEEECcCCeEEEE--ecC----CCCceEEEEECCCEEEEEcC--CCCEEEEecccCcceeeEEcCCCC--CeeEE
Confidence 355677777766543221 111 11112233445555555543 45788899874321 11111111 11122
Q ss_pred eee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCc-eEEEE--CCEEEEEecccCCCccCceEEEEeC
Q 016421 183 GSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLC-SGFFM--DGKFYVIGGMSSPTVSLTCGEEFDL 258 (390)
Q Consensus 183 ~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~ 258 (390)
... ++..++.|+.++ .+.+||..+..-... +....... +.+.. +..+++.||... -..+..||.
T Consensus 224 ~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~ll~~~~gs~----d~~i~i~d~ 291 (401)
T 4aez_A 224 AWRSDGLQLASGGNDN------VVQIWDARSSIPKFT--KTNHNAAVKAVAWCPWQSNLLATGGGTM----DKQIHFWNA 291 (401)
T ss_dssp EECTTSSEEEEEETTS------CEEEEETTCSSEEEE--ECCCSSCCCEEEECTTSTTEEEEECCTT----TCEEEEEET
T ss_pred EEcCCCCEEEEEeCCC------eEEEccCCCCCccEE--ecCCcceEEEEEECCCCCCEEEEecCCC----CCEEEEEEC
Confidence 221 566777776543 488999987653321 11111112 22232 346676664211 235788999
Q ss_pred CCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEE--ecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEE-EeC
Q 016421 259 ETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAV--EYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK-ACG 334 (390)
Q Consensus 259 ~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~--gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~-~~~ 334 (390)
.+.+-...-..... ...++. -+++.++. |...+.+.+||..+.....+..++..... -..+. .-+
T Consensus 292 ~~~~~~~~~~~~~~-------v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~----v~~~~~s~d 360 (401)
T 4aez_A 292 ATGARVNTVDAGSQ-------VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR----VLYSALSPD 360 (401)
T ss_dssp TTCCEEEEEECSSC-------EEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSC----CCEEEECTT
T ss_pred CCCCEEEEEeCCCc-------EEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCC----EEEEEECCC
Confidence 87764332211110 001222 24544444 44678999999988877765544322211 11222 236
Q ss_pred CEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 335 NELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 335 ~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++++.|+.++ .|.+|+..+
T Consensus 361 g~~l~s~~~dg------~i~iw~~~~ 380 (401)
T 4aez_A 361 GRILSTAASDE------NLKFWRVYD 380 (401)
T ss_dssp SSEEEEECTTS------EEEEEECCC
T ss_pred CCEEEEEeCCC------cEEEEECCC
Confidence 77777777654 588999877
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.25 Score=43.91 Aligned_cols=184 Identities=17% Similarity=0.185 Sum_probs=94.4
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEee-cCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMK-CEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++.+++.|+ .+..+.+||..+++-.. +..-+.... .....-+++.++.|+.+ ..+.+||..++.-...
T Consensus 91 ~~~~l~s~s--~D~~i~lWd~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~g~~d------g~v~i~~~~~~~~~~~-- 159 (321)
T 3ow8_A 91 TLPIAASSS--LDAHIRLWDLENGKQIKSIDAGPVDAW-TLAFSPDSQYLATGTHV------GKVNIFGVESGKKEYS-- 159 (321)
T ss_dssp SSSEEEEEE--TTSEEEEEETTTTEEEEEEECCTTCCC-CEEECTTSSEEEEECTT------SEEEEEETTTCSEEEE--
T ss_pred CCCEEEEEe--CCCcEEEEECCCCCEEEEEeCCCccEE-EEEECCCCCEEEEEcCC------CcEEEEEcCCCceeEE--
Confidence 344555554 34578889988775422 211111111 11112256666666643 3478888887653321
Q ss_pred CCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCC
Q 016421 221 MHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLT 297 (390)
Q Consensus 221 ~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~ 297 (390)
+.........+.. +++..+.|+.++ .+..||+.+.+-... +... ......++. -++++++.|+.-
T Consensus 160 ~~~~~~~v~~~~~spdg~~lasg~~dg------~i~iwd~~~~~~~~~--~~~h----~~~v~~l~~spd~~~l~s~s~d 227 (321)
T 3ow8_A 160 LDTRGKFILSIAYSPDGKYLASGAIDG------IINIFDIATGKLLHT--LEGH----AMPIRSLTFSPDSQLLVTASDD 227 (321)
T ss_dssp EECSSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEE--ECCC----SSCCCEEEECTTSCEEEEECTT
T ss_pred ecCCCceEEEEEECCCCCEEEEEcCCC------eEEEEECCCCcEEEE--Eccc----CCceeEEEEcCCCCEEEEEcCC
Confidence 1111111122222 667777766543 477899988754321 1110 001112332 367778888888
Q ss_pred CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 298 NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 298 ~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.|.+||..+..-... +.... ..-.++... ++..++.|+.++ .|.+||..+
T Consensus 228 g~i~iwd~~~~~~~~~--~~~h~----~~v~~~~~sp~~~~l~s~s~D~------~v~iwd~~~ 279 (321)
T 3ow8_A 228 GYIKIYDVQHANLAGT--LSGHA----SWVLNVAFCPDDTHFVSSSSDK------SVKVWDVGT 279 (321)
T ss_dssp SCEEEEETTTCCEEEE--ECCCS----SCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred CeEEEEECCCcceeEE--EcCCC----CceEEEEECCCCCEEEEEeCCC------cEEEEeCCC
Confidence 8899999987654332 11111 111222222 566777777654 477888866
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.31 Score=49.21 Aligned_cols=231 Identities=10% Similarity=-0.005 Sum_probs=122.6
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccCCeEEEEECCCCcEeecCCCC-C
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN-H 175 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~-~ 175 (390)
..|++......+..||+.+.++..+.. +... ....-.++... ++.|++.. ...-+++||+.+++++...... .
T Consensus 374 g~lWigt~~~Gl~~~~~~~~~~~~~~~-~~~~-~~~~v~~i~~d~~g~lWigt---~~~Gl~~~~~~~~~~~~~~~~~~~ 448 (781)
T 3v9f_A 374 GKLWIGTDGGGINVFENGKRVAIYNKE-NREL-LSNSVLCSLKDSEGNLWFGT---YLGNISYYNTRLKKFQIIELEKNE 448 (781)
T ss_dssp SCEEEEEBSSCEEEEETTEEEEECC------C-CCSBEEEEEECTTSCEEEEE---TTEEEEEECSSSCEEEECCSTTTC
T ss_pred CCEEEEeCCCcEEEEECCCCeEEEccC-CCCC-CCcceEEEEECCCCCEEEEe---ccCCEEEEcCCCCcEEEeccCCCC
Confidence 456655435668889988776655421 1110 00110112222 56677632 1236889999999988765321 1
Q ss_pred CCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCC---CCcCceEEEE--CCEEEEEecccCCCcc
Q 016421 176 PRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHS---PRRLCSGFFM--DGKFYVIGGMSSPTVS 249 (390)
Q Consensus 176 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~---~r~~~~~~~~--~~~iyv~GG~~~~~~~ 249 (390)
...-.+...- ++.|++... .-+.+||+.+++|+....... .......+.. +|.|++.. ..
T Consensus 449 ~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~----- 514 (781)
T 3v9f_A 449 LLDVRVFYEDKNKKIWIGTH--------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FG----- 514 (781)
T ss_dssp CCCEEEEEECTTSEEEEEET--------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SS-----
T ss_pred CCeEEEEEECCCCCEEEEEC--------CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cC-----
Confidence 1111222222 467776421 348899999998876543221 1111122222 56776642 21
Q ss_pred CceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeE-EEEeCCCCceEEccC---CCccccCCC
Q 016421 250 LTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMV-KKYDKLKNTWDVLGR---LPVRADLSN 324 (390)
Q Consensus 250 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v-~~yd~~~~~W~~v~~---~~~~~~~~~ 324 (390)
..+.+||+.++++.......... ......++. .+|.|++... ..+ .+||+.++++..... ++....
T Consensus 515 -~Gl~~~~~~~~~~~~~~~~~~l~---~~~i~~i~~d~~g~lWi~T~--~Glv~~~d~~~~~~~~~~~~~gl~~~~i--- 585 (781)
T 3v9f_A 515 -GGVGIYTPDMQLVRKFNQYEGFC---SNTINQIYRSSKGQMWLATG--EGLVCFPSARNFDYQVFQRKEGLPNTHI--- 585 (781)
T ss_dssp -SCEEEECTTCCEEEEECTTTTCS---CSCEEEEEECTTSCEEEEET--TEEEEESCTTTCCCEEECGGGTCSCCCC---
T ss_pred -CCEEEEeCCCCeEEEccCCCCCC---CCeeEEEEECCCCCEEEEEC--CCceEEECCCCCcEEEccccCCCCCceE---
Confidence 23778999999988765311100 000011222 3577877654 456 999999998877642 332211
Q ss_pred cceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016421 325 GWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 325 ~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
.+++. -+|+|++.+. . -+.+|+|++ .++....
T Consensus 586 ---~~i~~d~~g~lW~~t~-~-------Gl~~~~~~~------~~~~~~~ 618 (781)
T 3v9f_A 586 ---RAISEDKNGNIWASTN-T-------GISCYITSK------KCFYTYD 618 (781)
T ss_dssp ---CEEEECSSSCEEEECS-S-------CEEEEETTT------TEEEEEC
T ss_pred ---EEEEECCCCCEEEEcC-C-------ceEEEECCC------CceEEec
Confidence 23333 3677887763 2 167888877 4565553
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.11 Score=52.52 Aligned_cols=226 Identities=12% Similarity=0.098 Sum_probs=110.7
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCC
Q 016421 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHP 176 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~ 176 (390)
..++...+....+..||..+.+.... +..+.. ......+..++..++.|+. ...+.+||..+++....-....
T Consensus 25 ~~~la~~~~~g~v~iwd~~~~~~~~~--~~~~~~--~v~~~~~s~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~- 97 (814)
T 3mkq_A 25 EPWVLTTLYSGRVEIWNYETQVEVRS--IQVTET--PVRAGKFIARKNWIIVGSD--DFRIRVFNYNTGEKVVDFEAHP- 97 (814)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEE--EECCSS--CEEEEEEEGGGTEEEEEET--TSEEEEEETTTCCEEEEEECCS-
T ss_pred CCEEEEEeCCCEEEEEECCCCceEEE--EecCCC--cEEEEEEeCCCCEEEEEeC--CCeEEEEECCCCcEEEEEecCC-
Confidence 34555555566788889877654321 111100 0001122335555556653 4678999998876533211111
Q ss_pred Ccceeeee-eCCEEEEEeccCCCCCccceEEEEECCCC-cEEEcCCCCCCCcCce-EEEE--CCEEEEEecccCCCccCc
Q 016421 177 RCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTG-RWEMLPSMHSPRRLCS-GFFM--DGKFYVIGGMSSPTVSLT 251 (390)
Q Consensus 177 r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~r~~~~-~~~~--~~~iyv~GG~~~~~~~~~ 251 (390)
..-..++. -++..++.|+.+ ..+.+||..++ ..... +........ ++.. ++.+++.|+.+ .
T Consensus 98 ~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~d------g 163 (814)
T 3mkq_A 98 DYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQT--FEGHEHFVMCVAFNPKDPSTFASGCLD------R 163 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEE--EECCSSCEEEEEEETTEEEEEEEEETT------S
T ss_pred CCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEE--EcCCCCcEEEEEEEcCCCCEEEEEeCC------C
Confidence 11112222 245455555543 34788888766 32221 111111122 2233 45677776654 3
Q ss_pred eEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE---CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCccee
Q 016421 252 CGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV---DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGL 328 (390)
Q Consensus 252 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~---~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~ 328 (390)
.+..||+.+..-........ ......++.. ++.+++.|+..+.+..||..+.+-.. .+..... .-.
T Consensus 164 ~v~vwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~----~v~ 232 (814)
T 3mkq_A 164 TVKVWSLGQSTPNFTLTTGQ-----ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA--TLEGHMS----NVS 232 (814)
T ss_dssp EEEEEETTCSSCSEEEECCC-----TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE--EEECCSS----CEE
T ss_pred eEEEEECCCCcceeEEecCC-----CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE--EEcCCCC----CEE
Confidence 57788886644211110000 0111123332 67788888888899999988765322 1111110 111
Q ss_pred EEE-EeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 329 AFK-ACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 329 ~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.++ .-++.+++.|+.++ .|.+||..+
T Consensus 233 ~~~~~~~~~~l~~~~~dg------~v~vwd~~~ 259 (814)
T 3mkq_A 233 FAVFHPTLPIIISGSEDG------TLKIWNSST 259 (814)
T ss_dssp EEEECSSSSEEEEEETTS------CEEEEETTT
T ss_pred EEEEcCCCCEEEEEeCCC------eEEEEECCC
Confidence 222 22566777777653 377888866
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.08 Score=46.92 Aligned_cols=247 Identities=10% Similarity=0.082 Sum_probs=110.4
Q ss_pred cEEEEE-eCCCeeEEEecC-CCceeeCCCCCCCcccCCCCeeEEEeC-CEEEEEcccccCCeEEEEECC--CCcEeecCC
Q 016421 98 HWVYLV-CDPRGWEAFDPM-KKKWMALPKIPCDECFNHADKESLAVG-SELLVFGRELFDFAIWKYSLV--FRSWMKCEG 172 (390)
Q Consensus 98 ~~l~~~-~~~~~~~~~d~~-~~~W~~l~~~p~~~~~~~~~~~~~~~~-~~iy~~Gg~~~~~~~~~yd~~--t~~W~~~~~ 172 (390)
..+|+. .....+..||.. +.+...+..++...... ...+..+ +.+|+.+.. ...+.+|+.. ++++..+..
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~spdg~~l~~~~~~--~~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQ---PMVVSPDKRYLYVGVRP--EFRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCC---CEEECTTSSEEEEEETT--TTEEEEEEECTTTCCEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCc---eEEECCCCCEEEEeecC--CCeEEEEEecCCCCceeeccc
Confidence 455665 335667777764 33343332222111110 1122233 446665542 2567777765 677765543
Q ss_pred CCCCCcceeeee-e-CCEEEEEeccCCCCCccceEEEEECCCCc-EEEcCCCCCCCcCceEEEE-CC-EEEEEecccCCC
Q 016421 173 MNHPRCLFGSGS-L-GSIAIIAGGSDKNGHVLKSAELYDSTTGR-WEMLPSMHSPRRLCSGFFM-DG-KFYVIGGMSSPT 247 (390)
Q Consensus 173 ~~~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~ 247 (390)
++.......++. - +..+|+.+.. ...+.+||...+. .+.+............+.. ++ .||+.+..+
T Consensus 80 ~~~~~~~~~~~~s~dg~~l~~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--- 150 (343)
T 1ri6_A 80 SALPGSLTHISTDHQGQFVFVGSYN------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ--- 150 (343)
T ss_dssp EECSSCCSEEEECTTSSEEEEEETT------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG---
T ss_pred cccCCCCcEEEEcCCCCEEEEEecC------CCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCC---
Confidence 322221122222 2 3456666532 2347778773222 2222111211112222222 44 576654222
Q ss_pred ccCceEEEEeCCC-CceEEcc--CCCCCCCCcCCCCCEEEE-ECC-EEEEEecCCCeEEEEeCC--CCceEE---ccCCC
Q 016421 248 VSLTCGEEFDLET-RKWRKIE--GMYPNVNRAAQAPPLVAV-VDN-QLYAVEYLTNMVKKYDKL--KNTWDV---LGRLP 317 (390)
Q Consensus 248 ~~~~~v~~yd~~~-~~W~~~~--~~~~~~~~~~~~~~~~~~-~~g-~l~v~gg~~~~v~~yd~~--~~~W~~---v~~~~ 317 (390)
..+..||+.+ .+...+. .......... ..++. -+| .+|+.+...+.+.+||.. +.++.. +..++
T Consensus 151 ---~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~ 224 (343)
T 1ri6_A 151 ---DRICLFTVSDDGHLVAQDPAEVTTVEGAGP---RHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP 224 (343)
T ss_dssp ---TEEEEEEECTTSCEEEEEEEEEECSTTCCE---EEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC
T ss_pred ---CEEEEEEecCCCceeeecccccccCCCCCc---ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccC
Confidence 3578899887 6665432 1111100001 01222 234 477777677889999984 455543 23233
Q ss_pred ccccCCCcceeEEEEe--CCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016421 318 VRADLSNGWGLAFKAC--GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 318 ~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
...... .....++.. +..||+.+..++ .|.+||++. ...+++.+...
T Consensus 225 ~~~~~~-~~~~~i~~s~dg~~l~v~~~~~~------~i~v~d~~~----~~~~~~~~~~~ 273 (343)
T 1ri6_A 225 ENFSDT-RWAADIHITPDGRHLYACDRTAS------LITVFSVSE----DGSVLSKEGFQ 273 (343)
T ss_dssp TTCCSC-CCEEEEEECTTSSEEEEEETTTT------EEEEEEECT----TSCCEEEEEEE
T ss_pred cccccc-CCccceEECCCCCEEEEEecCCC------EEEEEEEcC----CCCceEEeeee
Confidence 221100 011122222 346776664332 577888763 11345555443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.034 Score=56.09 Aligned_cols=190 Identities=10% Similarity=0.078 Sum_probs=101.9
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--C--CEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016421 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--G--SIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
+..++.|+. +..+.+||....++..+..+.........+.+ + +..++.|+.++ .+.+||..++.|..+
T Consensus 21 g~~latg~~--dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~I~vwd~~~~~~~~~ 92 (753)
T 3jro_A 21 GKRLATCSS--DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKEENGRWSQI 92 (753)
T ss_dssp SCCEEEEET--TTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS------CEEEEEEETTEEEEE
T ss_pred CCeEEEEEC--CCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC------eEEEEECCCCccccc
Confidence 444455542 35678888876666655444333322222222 2 66777777543 388899989887665
Q ss_pred CCCCCCCcCceEEEE--C--CEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--------
Q 016421 219 PSMHSPRRLCSGFFM--D--GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-------- 286 (390)
Q Consensus 219 ~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-------- 286 (390)
..+.........+.. + +.+++.|+.++ .+..||..+..-.....+... ......+...
T Consensus 93 ~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg------~I~vwdl~~~~~~~~~~~~~~----~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 93 AVHAVHSASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIIIDAH----AIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCSSSCCCCEEEECC----SSCEEEEEECCCC-----
T ss_pred ccccCCCCCeEEEEECCCCCCCEEEEEeCCC------cEEEEEeecCCCcceeEeecC----CCceEEEEecCccccccc
Confidence 544433333333333 3 66777776543 477788876521111000000 0000011111
Q ss_pred ------CCEEEEEecCCCeEEEEeCCCC--ceEEccCCCccccCCCcceeEEEEe-C---CEEEEEcCCCCCCCCeEEEe
Q 016421 287 ------DNQLYAVEYLTNMVKKYDKLKN--TWDVLGRLPVRADLSNGWGLAFKAC-G---NELLVVGGQRGPEGENVVLN 354 (390)
Q Consensus 287 ------~g~l~v~gg~~~~v~~yd~~~~--~W~~v~~~~~~~~~~~~~~~~~~~~-~---~~lyv~GG~~~~~~~~~~i~ 354 (390)
++.+++.|+..+.|..||..++ .+..+..+..... .-.+++.. + +.+++.||.++ .|.
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~----~V~~l~~sp~~~~~~~l~s~s~Dg------~I~ 232 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPTVLLRSYLASVSQDR------TCI 232 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCCCSSSEEEEEEESSS------CEE
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC----cEEEEEeccCCCCCCEEEEEecCC------EEE
Confidence 3677888887888999998665 3444433322111 11222222 3 68888888664 377
Q ss_pred eecCCC
Q 016421 355 SWCPKS 360 (390)
Q Consensus 355 ~y~~~~ 360 (390)
+||..+
T Consensus 233 iwd~~~ 238 (753)
T 3jro_A 233 IWTQDN 238 (753)
T ss_dssp EEEESS
T ss_pred EecCCC
Confidence 888876
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.061 Score=47.66 Aligned_cols=232 Identities=9% Similarity=0.025 Sum_probs=112.0
Q ss_pred ccEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCC-EEEEEcccccCCeEEEEECCCCcE--eecCC
Q 016421 97 EHWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGS-ELLVFGRELFDFAIWKYSLVFRSW--MKCEG 172 (390)
Q Consensus 97 ~~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~iy~~Gg~~~~~~~~~yd~~t~~W--~~~~~ 172 (390)
...+|+.. ....+..+|+.+.+....-..+.... ...+..++ .+|+.+.. ...++++|+.+++. ..+..
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-----~~~~s~dg~~l~~~~~~--~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-----DTAITSDCSNVVVTSDF--CQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-----EEEECSSSCEEEEEEST--TCEEEEEECSSSSCEEEEEEE
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-----eEEEcCCCCEEEEEeCC--CCeEEEEECCCCceeEEeccc
Confidence 45566654 35678889998887654332222110 11222234 57776542 34899999988764 22222
Q ss_pred CCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CC-EEEEEecccCCCccC
Q 016421 173 MNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DG-KFYVIGGMSSPTVSL 250 (390)
Q Consensus 173 ~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~ 250 (390)
...+........-+..+| .+...+ ....+.+||..+++-...- +........+.. +| .+|+.+....
T Consensus 82 ~~~~~~~~~~s~dg~~l~-~~~~~~---~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~----- 150 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAV-TVTGLN---HPFNMQSYSFLKNKFISTI--PIPYDAVGIAISPNGNGLILIDRSSA----- 150 (331)
T ss_dssp CSSCCCCEEECTTSSEEE-ECCCSS---SSCEEEEEETTTTEEEEEE--ECCTTEEEEEECTTSSCEEEEEETTT-----
T ss_pred CCCCccceEECCCCCEEE-EecCCC---CcccEEEEECCCCCeEEEE--ECCCCccceEECCCCCEEEEEecCCC-----
Confidence 222221112212244566 332211 1237999999988764432 222122333332 55 4777654321
Q ss_pred ceEEEEeCCCCc-eEEc--cCCCCCCCCcCCCCCEEEE-ECC-EEEEEecCCCeEEEEeCCCCce-EEccCCCccccCCC
Q 016421 251 TCGEEFDLETRK-WRKI--EGMYPNVNRAAQAPPLVAV-VDN-QLYAVEYLTNMVKKYDKLKNTW-DVLGRLPVRADLSN 324 (390)
Q Consensus 251 ~~v~~yd~~~~~-W~~~--~~~~~~~~~~~~~~~~~~~-~~g-~l~v~gg~~~~v~~yd~~~~~W-~~v~~~~~~~~~~~ 324 (390)
..+..||...+. .... ..++... ....++. -+| .+|+.+...+.+.+||+.+.+. ..+..++.....
T Consensus 151 ~~i~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~-- 223 (331)
T 3u4y_A 151 NTVRRFKIDADGVLFDTGQEFISGGT-----RPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLP-- 223 (331)
T ss_dssp TEEEEEEECTTCCEEEEEEEEECSSS-----SEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCC--
T ss_pred ceEEEEEECCCCcEeecCCccccCCC-----CccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCC--
Confidence 115556654322 1111 0011110 0111222 245 4888877778999999988775 112222222111
Q ss_pred cceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 325 GWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 325 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.++..-+..||+.... ...|.+||+++
T Consensus 224 -~~~~~spdg~~l~v~~~~------~~~i~~~d~~~ 252 (331)
T 3u4y_A 224 -GTIVVSRDGSTVYVLTES------TVDVFNFNQLS 252 (331)
T ss_dssp -CCEEECTTSSEEEEECSS------EEEEEEEETTT
T ss_pred -ceEEECCCCCEEEEEEcC------CCEEEEEECCC
Confidence 112221123447776542 23588899987
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.31 Score=43.27 Aligned_cols=215 Identities=13% Similarity=0.065 Sum_probs=105.4
Q ss_pred eCCCeeEEEecCCCceee-CCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceee
Q 016421 104 CDPRGWEAFDPMKKKWMA-LPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGS 182 (390)
Q Consensus 104 ~~~~~~~~~d~~~~~W~~-l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~ 182 (390)
+....+..+|..+.+-.. +..-+.. .....+..++..++.|+. ...+.+||..+.+-...-.... ....++
T Consensus 99 s~D~~i~lWd~~~~~~~~~~~~~~~~-----~~~~~~spdg~~l~~g~~--dg~v~i~~~~~~~~~~~~~~~~-~~v~~~ 170 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIKSIDAGPVD-----AWTLAFSPDSQYLATGTH--VGKVNIFGVESGKKEYSLDTRG-KFILSI 170 (321)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCTTC-----CCCEEECTTSSEEEEECT--TSEEEEEETTTCSEEEEEECSS-SCEEEE
T ss_pred eCCCcEEEEECCCCCEEEEEeCCCcc-----EEEEEECCCCCEEEEEcC--CCcEEEEEcCCCceeEEecCCC-ceEEEE
Confidence 345667778887664322 1111110 001123335555566543 4578888887765322111111 111112
Q ss_pred e-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCC
Q 016421 183 G-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLE 259 (390)
Q Consensus 183 ~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~ 259 (390)
+ .-+++.++.|+.++ .+.+||..+++-... +.........+.. ++++++.|+.++ .+..||..
T Consensus 171 ~~spdg~~lasg~~dg------~i~iwd~~~~~~~~~--~~~h~~~v~~l~~spd~~~l~s~s~dg------~i~iwd~~ 236 (321)
T 3ow8_A 171 AYSPDGKYLASGAIDG------IINIFDIATGKLLHT--LEGHAMPIRSLTFSPDSQLLVTASDDG------YIKIYDVQ 236 (321)
T ss_dssp EECTTSSEEEEEETTS------CEEEEETTTTEEEEE--ECCCSSCCCEEEECTTSCEEEEECTTS------CEEEEETT
T ss_pred EECCCCCEEEEEcCCC------eEEEEECCCCcEEEE--EcccCCceeEEEEcCCCCEEEEEcCCC------eEEEEECC
Confidence 2 12566777776543 488999988764321 1111111122222 667777766543 47779988
Q ss_pred CCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCEE
Q 016421 260 TRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNEL 337 (390)
Q Consensus 260 ~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~l 337 (390)
+...... +... ......++. -+++.++.++.-+.|.+||..+.+-.. .+..... .-.++.. -++..
T Consensus 237 ~~~~~~~--~~~h----~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~--~~~~h~~----~v~~v~~s~~g~~ 304 (321)
T 3ow8_A 237 HANLAGT--LSGH----ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH--TFFDHQD----QVWGVKYNGNGSK 304 (321)
T ss_dssp TCCEEEE--ECCC----SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--EECCCSS----CEEEEEECTTSSE
T ss_pred CcceeEE--EcCC----CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE--EEcCCCC----cEEEEEECCCCCE
Confidence 7654322 1110 000111222 256777777777899999988765332 2211111 1112222 25566
Q ss_pred EEEcCCCCCCCCeEEEeeecC
Q 016421 338 LVVGGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 338 yv~GG~~~~~~~~~~i~~y~~ 358 (390)
++.||.++ .|.+||.
T Consensus 305 l~s~~~d~------~i~vwd~ 319 (321)
T 3ow8_A 305 IVSVGDDQ------EIHIYDC 319 (321)
T ss_dssp EEEEETTC------CEEEEEC
T ss_pred EEEEeCCC------eEEEEeC
Confidence 67777654 3667763
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.52 E-value=0.15 Score=44.86 Aligned_cols=186 Identities=12% Similarity=0.083 Sum_probs=91.9
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++..++.|+. ...+.+||..+.+....-... ...-..++. -+++.++.|+.+ ..+.+||..++.-...
T Consensus 34 ~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~-- 102 (312)
T 4ery_A 34 NGEWLASSSA--DKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSNLLVSASDD------KTLKIWDVSSGKCLKT-- 102 (312)
T ss_dssp TSSEEEEEET--TSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEEEE--
T ss_pred CCCEEEEeeC--CCeEEEEeCCCcccchhhccC-CCceEEEEEcCCCCEEEEECCC------CEEEEEECCCCcEEEE--
Confidence 3445555542 346788888877664432111 111112222 255666777654 3588899887764321
Q ss_pred CCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCC
Q 016421 221 MHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLT 297 (390)
Q Consensus 221 ~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~ 297 (390)
+.........+.. ++.+++.|+.++ .+..||+.+.+-... +..... ....++. .++.+++.++..
T Consensus 103 ~~~~~~~v~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~--~~~~~~----~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 103 LKGHSNYVFCCNFNPQSNLIVSGSFDE------SVRIWDVKTGKCLKT--LPAHSD----PVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTS------CEEEEETTTCCEEEE--ECCCSS----CEEEEEECTTSSEEEEEETT
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCEEEEE--ecCCCC----cEEEEEEcCCCCEEEEEeCC
Confidence 1111111122222 556666666543 477899987654321 111000 0001222 256777888888
Q ss_pred CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 298 NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 298 ~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.+..||..+.+-...-....... .......-+++.++.|+.++ .|.+||..+
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~d~------~i~iwd~~~ 223 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGKYILAATLDN------TLKLWDYSK 223 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCC----EEEEEECTTSSEEEEEETTT------EEEEEETTT
T ss_pred CcEEEEECCCCceeeEEeccCCCc----eEEEEECCCCCEEEEEcCCC------eEEEEECCC
Confidence 899999998876433211111000 00111122556666666543 467777765
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.43 Score=42.57 Aligned_cols=225 Identities=12% Similarity=0.104 Sum_probs=108.4
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcE--eecCCCCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSW--MKCEGMNH 175 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W--~~~~~~~~ 175 (390)
..|...+....+..+|..+.+-... ++..... .....+..++.+++.|+. ...+.+||..+..- .....+..
T Consensus 68 ~~l~s~s~Dg~v~iWd~~~~~~~~~--~~~~~~~--v~~~~~s~~~~~l~s~~~--d~~v~iw~~~~~~~~~~~~~~~~~ 141 (340)
T 1got_B 68 RLLLSASQDGKLIIWDSYTTNKVHA--IPLRSSW--VMTCAYAPSGNYVACGGL--DNICSIYNLKTREGNVRVSRELAG 141 (340)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEE--EECSSSC--EEEEEECTTSSEEEEEET--TCEEEEEETTTCSBSCEEEEEEEC
T ss_pred CEEEEEeCCCcEEEEECCCCCcceE--eecCCcc--EEEEEECCCCCEEEEEeC--CCeEEEEECccCCCcceeEEEecC
Confidence 3444444566777888766543211 1111100 001112224555566653 45788888876431 11111111
Q ss_pred CCcce-eee-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCc
Q 016421 176 PRCLF-GSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLT 251 (390)
Q Consensus 176 ~r~~~-~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 251 (390)
..... .+. .-++. ++.|+.+ ..+.+||..++.-... +.........+.. ++++++.|+.++
T Consensus 142 h~~~v~~~~~~~~~~-l~s~s~d------~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sg~~d~------ 206 (340)
T 1got_B 142 HTGYLSCCRFLDDNQ-IVTSSGD------TTCALWDIETGQQTTT--FTGHTGDVMSLSLAPDTRLFVSGACDA------ 206 (340)
T ss_dssp CSSCEEEEEEEETTE-EEEEETT------SCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS------
T ss_pred CCccEEEEEECCCCc-EEEEECC------CcEEEEECCCCcEEEE--EcCCCCceEEEEECCCCCEEEEEeCCC------
Confidence 11111 111 22455 4445433 3488899988765332 1111111222222 567777776543
Q ss_pred eEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEE
Q 016421 252 CGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAF 330 (390)
Q Consensus 252 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~ 330 (390)
.+..||+.+..-...- ... ......++. -++.+++.|+.-+.+..||..+++-...-..+... .+...
T Consensus 207 ~v~~wd~~~~~~~~~~--~~h----~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~-----~~v~~ 275 (340)
T 1got_B 207 SAKLWDVREGMCRQTF--TGH----ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII-----CGITS 275 (340)
T ss_dssp CEEEEETTTCSEEEEE--CCC----SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC-----SCEEE
T ss_pred cEEEEECCCCeeEEEE--cCC----cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcc-----cceEE
Confidence 4677898876533211 110 000011222 25777788888889999999876532211111110 01112
Q ss_pred EE--eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 331 KA--CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 331 ~~--~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+. -++++++.|+.++ .|.+||..+
T Consensus 276 ~~~s~~g~~l~~g~~d~------~i~vwd~~~ 301 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDF------NCNVWDALK 301 (340)
T ss_dssp EEECTTSSEEEEEETTS------EEEEEETTT
T ss_pred EEECCCCCEEEEECCCC------eEEEEEccc
Confidence 22 2677788887653 588899865
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=96.46 E-value=0.062 Score=47.21 Aligned_cols=233 Identities=9% Similarity=-0.007 Sum_probs=114.2
Q ss_pred ccEEEEE--------eCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eC-CEEEEEcccccCCeEEEEECCCC
Q 016421 97 EHWVYLV--------CDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VG-SELLVFGRELFDFAIWKYSLVFR 165 (390)
Q Consensus 97 ~~~l~~~--------~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~-~~iy~~Gg~~~~~~~~~yd~~t~ 165 (390)
+..+|+. .....+..||+.+.++..+.. +..... ......++ .+ +.+|+... ...+++||+. +
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~-~~~~~~i~~~~~~g~l~v~~~---~~~l~~~d~~-g 101 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PEVNGY-GGIPAGCQCDRDANQLFVADM---RLGLLVVQTD-G 101 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CEETTE-ECCEEEEEECSSSSEEEEEET---TTEEEEEETT-S
T ss_pred CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cccCCC-CCCCceEEEecCCCcEEEEEC---CCCEEEEeCC-C
Confidence 3456665 235678889988887765432 100000 00111222 24 67888653 2378999998 7
Q ss_pred cEeec-CCCCCC---Ccceeeee-eCCEEEEEeccCC---------CCCccceEEEEECCCCcEEEcCC-CCCCCcCceE
Q 016421 166 SWMKC-EGMNHP---RCLFGSGS-LGSIAIIAGGSDK---------NGHVLKSAELYDSTTGRWEMLPS-MHSPRRLCSG 230 (390)
Q Consensus 166 ~W~~~-~~~~~~---r~~~~~~~-~~~~lyv~GG~~~---------~~~~~~~~~~yd~~t~~W~~~~~-~~~~r~~~~~ 230 (390)
+...+ ...... .....++. -++.+|+...... .......+++||+. ++...+.. ... ....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~---~~~i 177 (314)
T 1pjx_A 102 TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQF---PNGI 177 (314)
T ss_dssp CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESS---EEEE
T ss_pred CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCC---cceE
Confidence 76655 322111 11122222 2578887754220 01113568889887 65544311 111 1223
Q ss_pred EEE-----CC-EEEEEecccCCCccCceEEEEeCC-CCceEEc---cCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCe
Q 016421 231 FFM-----DG-KFYVIGGMSSPTVSLTCGEEFDLE-TRKWRKI---EGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNM 299 (390)
Q Consensus 231 ~~~-----~~-~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~---~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~ 299 (390)
+.. ++ .+|+.... ...+.+||+. +++.... ..++.... .....++. -+|.+|+.....+.
T Consensus 178 ~~~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~---~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 178 AVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHE---GGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEEEEEEEECCCCSS---CEEEEEEEBTTCCEEEEEETTTE
T ss_pred EEecccCCCCCEEEEEECC------CCeEEEEECCCCCccccceEEEECCCCCC---CCCCceEECCCCCEEEEEcCCCE
Confidence 333 34 56776432 2457788875 4443211 11221100 00012222 35789988766678
Q ss_pred EEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCE-EEEEcCCCCCCCCeEEEeeecCCC
Q 016421 300 VKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNE-LLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 300 v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~-lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
|.+||+++++-...-..+... -.+++. -+++ ||+..... ..|++|+++.
T Consensus 249 i~~~d~~~g~~~~~~~~~~~~------~~~i~~~~dg~~l~v~~~~~------~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRCPFEK------PSNLHFKPQTKTIFVTEHEN------NAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCBSCSEEEECSSSC------EEEEEECTTSSEEEEEETTT------TEEEEEECSS
T ss_pred EEEEcCCCCcEeEEEeCCCCC------ceeEEECCCCCEEEEEeCCC------CeEEEEeCCC
Confidence 999999855432211222111 122222 2444 88876543 1588888876
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.81 Score=45.41 Aligned_cols=213 Identities=16% Similarity=0.172 Sum_probs=115.2
Q ss_pred cccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCc----ccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--E
Q 016421 96 VEHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDE----CFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--W 167 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~----~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W 167 (390)
.+..+|+......++++|..+. .|..-...+... +...........++.||+... ...++.+|..|++ |
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---DGRLIALDAATGKEVW 152 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT---TSEEEEEETTTCCEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC---CCEEEEEECCCCCEEe
Confidence 4677888766677899999866 487644332211 000111223456888888643 3578999998875 7
Q ss_pred eecCC-CCC--CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCC---CC--------------
Q 016421 168 MKCEG-MNH--PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHS---PR-------------- 225 (390)
Q Consensus 168 ~~~~~-~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~---~r-------------- 225 (390)
+.-.. -.. .......++.++.+|+..+.... .....+..||..+++ |+.-..-+. +.
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~-~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEY-GVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred eecCCcCcCcCcccccCcEEECCEEEEEeccccc-CCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 65322 111 11112334568888876432211 124579999999886 876321111 00
Q ss_pred --------c---CceEEEE---CCEEEEEeccc------------CCCccCceEEEEeCCCCc--eEEccCCCCCCCCcC
Q 016421 226 --------R---LCSGFFM---DGKFYVIGGMS------------SPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAA 277 (390)
Q Consensus 226 --------~---~~~~~~~---~~~iyv~GG~~------------~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~ 277 (390)
. ......+ ++.||+-.+.. +...+...+..+|+.|++ |+.-...........
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 0 0011223 67888765432 222344579999999875 764321111000000
Q ss_pred CCCCEEEE--ECC---EEEEEecCCCeEEEEeCCCCc--eEE
Q 016421 278 QAPPLVAV--VDN---QLYAVEYLTNMVKKYDKLKNT--WDV 312 (390)
Q Consensus 278 ~~~~~~~~--~~g---~l~v~gg~~~~v~~yd~~~~~--W~~ 312 (390)
...+.++. .+| .+++++...+.++++|.++++ |..
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence 11222332 256 567777777888888888875 544
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.44 Score=42.34 Aligned_cols=191 Identities=12% Similarity=-0.018 Sum_probs=97.8
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCC--cEEEcCCC------CCCC
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTG--RWEMLPSM------HSPR 225 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~------~~~r 225 (390)
..++++|+.+++....-....-....++++- ++.+|+.... ...+.+||+... .-..+... ....
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~ 142 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVA------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHF 142 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETT------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCC
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECC------CCEEEEEeCCCCeEEEEEecccCCCCCCcccc
Confidence 3689999988775432111111112233332 5779988643 246889998765 22222211 1111
Q ss_pred cCceEEEE---CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCC---CCcCCCCCEEEEE-C-CEEEEEecCC
Q 016421 226 RLCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNV---NRAAQAPPLVAVV-D-NQLYAVEYLT 297 (390)
Q Consensus 226 ~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~---~~~~~~~~~~~~~-~-g~l~v~gg~~ 297 (390)
.....+++ ++.||+..+.. ...|.+||+....-..+....... ...-.....+++- + |.||+.+...
T Consensus 143 ~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~ 217 (329)
T 3fvz_A 143 CQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN 217 (329)
T ss_dssp SSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT
T ss_pred CCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC
Confidence 22333333 68999986421 346888996544333332111100 0000011234443 3 8999999888
Q ss_pred CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCC-CCCeEEEeeecCCC
Q 016421 298 NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGP-EGENVVLNSWCPKS 360 (390)
Q Consensus 298 ~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~~~i~~y~~~~ 360 (390)
+.|.+||+++++....-..+..... . .+++...+.+|+..|..-. ......|.+||+.+
T Consensus 218 ~~I~~~~~~~G~~~~~~~~~~~~~~---~-~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~ 277 (329)
T 3fvz_A 218 GRIQCFKTDTKEFVREIKHASFGRN---V-FAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS 277 (329)
T ss_dssp TEEEEEETTTCCEEEEECCTTTTTC---E-EEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred CEEEEEECCCCcEEEEEeccccCCC---c-ceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence 9999999987766543222211110 0 1233344777777764321 11223577888776
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.2 Score=44.53 Aligned_cols=196 Identities=14% Similarity=0.002 Sum_probs=101.5
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEccc---------------ccCCeEEEE
Q 016421 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRE---------------LFDFAIWKY 160 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~---------------~~~~~~~~y 160 (390)
+..||+......+..+|+.......+................+.. ++.||+.-.. .....+++|
T Consensus 91 ~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 91 NNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp TTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred CCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence 456887755556888998766544432211111111111112223 5678886421 122568999
Q ss_pred ECCCCcEeecCC-CCCCCcceeeeee-C-CEEEEEeccCCCCCccceEEEEECCC---CcEEEcCCCCCCCcCceEEEE-
Q 016421 161 SLVFRSWMKCEG-MNHPRCLFGSGSL-G-SIAIIAGGSDKNGHVLKSAELYDSTT---GRWEMLPSMHSPRRLCSGFFM- 233 (390)
Q Consensus 161 d~~t~~W~~~~~-~~~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~yd~~t---~~W~~~~~~~~~r~~~~~~~~- 233 (390)
|+.+++...+.. +..+ .+++.- + +.+|+.-.. ...+.+|++.. +..+.+..++. ...+.+
T Consensus 171 d~~~~~~~~~~~~~~~p---~gia~~~dg~~lyv~d~~------~~~I~~~~~~~~~~~~~~~~~~~~g----P~gi~~d 237 (322)
T 2fp8_A 171 DPSTKETTLLLKELHVP---GGAEVSADSSFVLVAEFL------SHQIVKYWLEGPKKGTAEVLVKIPN----PGNIKRN 237 (322)
T ss_dssp ETTTTEEEEEEEEESCC---CEEEECTTSSEEEEEEGG------GTEEEEEESSSTTTTCEEEEEECSS----EEEEEEC
T ss_pred eCCCCEEEEeccCCccC---cceEECCCCCEEEEEeCC------CCeEEEEECCCCcCCccceEEeCCC----CCCeEEC
Confidence 998877654321 1112 122322 3 468887431 35688999875 23433322221 333444
Q ss_pred -CCEEEEEecccCCC----ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCC
Q 016421 234 -DGKFYVIGGMSSPT----VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 234 -~~~iyv~GG~~~~~----~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~ 308 (390)
+|+||+........ .....+.+||+....-..+.. +.... ......++..+++||+.+...+.|.+|+++.+
T Consensus 238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~-~~g~~--~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPL-PPPFA--GEHFEQIQEHDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEEC-CTTTT--TSCCCEEEEETTEEEEECSSCSEEEEEEC---
T ss_pred CCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEEC-CCCCc--cccceEEEEeCCEEEEeecCCCceEEEecccc
Confidence 57898875431100 012458889987554444432 21100 01222455678999999877789999987644
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.44 Score=43.53 Aligned_cols=191 Identities=10% Similarity=0.097 Sum_probs=94.1
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++.+++.|+. ...+.+||..+++-...-.. ....-.+++.. ++.+++.|+.+ ..+.+||..+++-.. .
T Consensus 108 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~~~~~~--~ 176 (420)
T 3vl1_A 108 QMRRFILGTT--EGDIKVLDSNFNLQREIDQA-HVSEITKLKFFPSGEALISSSQD------MQLKIWSVKDGSNPR--T 176 (420)
T ss_dssp SSCEEEEEET--TSCEEEECTTSCEEEEETTS-SSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCCCE--E
T ss_pred CCCEEEEEEC--CCCEEEEeCCCcceeeeccc-ccCccEEEEECCCCCEEEEEeCC------CeEEEEeCCCCcCce--E
Confidence 5666666653 45788999887655433111 11111122222 45566666643 358899988664211 1
Q ss_pred CCCCCcCceE-EEE-CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCC-CCCCc------------------CCC
Q 016421 221 MHSPRRLCSG-FFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYP-NVNRA------------------AQA 279 (390)
Q Consensus 221 ~~~~r~~~~~-~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~~~~~------------------~~~ 279 (390)
+......... +.. +++.++.|+.++ .+..||+.+.+-...-.... ..... ...
T Consensus 177 ~~~h~~~v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v 250 (420)
T 3vl1_A 177 LIGHRATVTDIAIIDRGRNVLSASLDG------TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK 250 (420)
T ss_dssp EECCSSCEEEEEEETTTTEEEEEETTS------CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred EcCCCCcEEEEEEcCCCCEEEEEcCCC------cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence 1111111222 222 566666666543 46778888765332211110 00000 000
Q ss_pred CCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-CCE-EEEEcCCCCCCCCeEEEeeec
Q 016421 280 PPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-GNE-LLVVGGQRGPEGENVVLNSWC 357 (390)
Q Consensus 280 ~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~~~-lyv~GG~~~~~~~~~~i~~y~ 357 (390)
......-++++++.|+..+.+.+||..+.+-... +..... ..-.+++.. ++. +++.|+.++ .|.+||
T Consensus 251 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~---~~v~~~~~~~~~~~~l~~g~~dg------~i~vwd 319 (420)
T 3vl1_A 251 NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ--LPSKFT---CSCNSLTVDGNNANYIYAGYENG------MLAQWD 319 (420)
T ss_dssp CTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE--ECCTTS---SCEEEEEECSSCTTEEEEEETTS------EEEEEE
T ss_pred cceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE--cccccC---CCceeEEEeCCCCCEEEEEeCCC------eEEEEE
Confidence 0001113677888888888899999987653221 111111 011222222 344 777777553 588899
Q ss_pred CCC
Q 016421 358 PKS 360 (390)
Q Consensus 358 ~~~ 360 (390)
..+
T Consensus 320 ~~~ 322 (420)
T 3vl1_A 320 LRS 322 (420)
T ss_dssp TTC
T ss_pred cCC
Confidence 876
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.2 Score=42.98 Aligned_cols=190 Identities=11% Similarity=-0.061 Sum_probs=97.3
Q ss_pred EEeCCCeeEEEecCC-CceeeCCCCCCCcccCCCCeeEEEeCCEEEEEccc--ccCCeEEEEECCCCcEeecCCCCCCCc
Q 016421 102 LVCDPRGWEAFDPMK-KKWMALPKIPCDECFNHADKESLAVGSELLVFGRE--LFDFAIWKYSLVFRSWMKCEGMNHPRC 178 (390)
Q Consensus 102 ~~~~~~~~~~~d~~~-~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~--~~~~~~~~yd~~t~~W~~~~~~~~~r~ 178 (390)
+++....++.+|+.+ .+...+...+...... ...+..++..++++.. .....++.++..+.....+.....
T Consensus 57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~---~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--- 130 (297)
T 2ojh_A 57 LLNSEGLLYRLSLAGDPSPEKVDTGFATICNN---DHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLP--- 130 (297)
T ss_dssp EEEETTEEEEEESSSCCSCEECCCTTCCCBCS---CCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSS---
T ss_pred EEEcCCeEEEEeCCCCCCceEecccccccccc---ceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCC---
Confidence 334456788899888 7666554332111111 1123345555555442 235688899988776555443221
Q ss_pred ceeeeee-C-CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCE-EEEEecccCCCccCceE
Q 016421 179 LFGSGSL-G-SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGK-FYVIGGMSSPTVSLTCG 253 (390)
Q Consensus 179 ~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~v 253 (390)
....... + ..+++.++.++ ...++.+|..++....+...+.. ...+.. +++ |++.+..++ ...+
T Consensus 131 ~~~~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~----~~~i 199 (297)
T 2ojh_A 131 SYWHGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGVETRLTHGEGR---NDGPDYSPDGRWIYFNSSRTG----QMQI 199 (297)
T ss_dssp EEEEEECTTSSEEEEEEEETT----EEEEEEEETTTCCEEECCCSSSC---EEEEEECTTSSEEEEEECTTS----SCEE
T ss_pred ccceEECCCCCEEEEEECCCC----ceEEEEEECCCCcceEcccCCCc---cccceECCCCCEEEEEecCCC----CccE
Confidence 1122221 3 44555554332 24677788888777665433221 122222 554 444433232 3467
Q ss_pred EEEeCCCCceEEccCCCCCCCCcCCCCCEEE-EECCEEEEEecC-----------CCeEEEEeCCCCceEEccC
Q 016421 254 EEFDLETRKWRKIEGMYPNVNRAAQAPPLVA-VVDNQLYAVEYL-----------TNMVKKYDKLKNTWDVLGR 315 (390)
Q Consensus 254 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg~-----------~~~v~~yd~~~~~W~~v~~ 315 (390)
+.+++.+.....+....... ..++ .-+|+.+++++. ...++.||..+++...+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~-------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 200 WRVRVDGSSVERITDSAYGD-------WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp EEEETTSSCEEECCCCSEEE-------EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE
T ss_pred EEECCCCCCcEEEecCCccc-------CCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec
Confidence 77887777776654322100 0111 124544444321 2569999999888766554
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.044 Score=49.63 Aligned_cols=150 Identities=11% Similarity=0.083 Sum_probs=73.3
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCc-EEEc
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGR-WEML 218 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~ 218 (390)
++.+++.|+. ...+.+||..++.|..+..+.........+.+ ++..++.|+.++ .+.+||..++. |...
T Consensus 22 ~g~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~------~v~vwd~~~~~~~~~~ 93 (377)
T 3dwl_C 22 QRTEFVTTTA--TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR------NAYVYEKRPDGTWKQT 93 (377)
T ss_dssp SSSEEECCCS--SSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTS------SEEEC------CCCCE
T ss_pred CCCEEEEecC--CCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCC------eEEEEEcCCCCceeee
Confidence 4555555543 35677888888888776665443332222222 456667776543 47888988776 5433
Q ss_pred CCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCc-eEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEe
Q 016421 219 PSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRK-WRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVE 294 (390)
Q Consensus 219 ~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~g 294 (390)
..+.........+.. ++++++.|+.++ .+..||..+.+ |..+..+... +......++. -++++++.|
T Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 94 LVLLRLNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHLKRP---LRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp EECCCCSSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEECSS---CCSCEEEEEECTTSSEEEEE
T ss_pred eEecccCCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEeecc---cCCCeEEEEEcCCCCEEEEE
Confidence 222222222222222 566666666533 36677877654 3222222210 0101111222 256777777
Q ss_pred cCCCeEEEEeCCCC
Q 016421 295 YLTNMVKKYDKLKN 308 (390)
Q Consensus 295 g~~~~v~~yd~~~~ 308 (390)
+..+.+.+||..+.
T Consensus 165 ~~d~~i~iwd~~~~ 178 (377)
T 3dwl_C 165 CADRKAYVLSAYVR 178 (377)
T ss_dssp ESSSCEEEEEECCS
T ss_pred eCCCEEEEEEEEec
Confidence 77788999998644
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.98 Score=45.65 Aligned_cols=241 Identities=10% Similarity=0.084 Sum_probs=120.1
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--CCEEEEEcccccCCeEEEEECCCCcEeecCCCC-
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN- 174 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~- 174 (390)
..|++......+..||+....+..+...+.+.......-..+.. ++.|++.. ...-+.+||+.++++......+
T Consensus 321 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt---~~~Gl~~~~~~~~~~~~~~~~~~ 397 (795)
T 4a2l_A 321 GGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGT---NDGGLNLYNPITQRFTSYTLQED 397 (795)
T ss_dssp SCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEE---SSSCEEEECTTTCCEEEECCC--
T ss_pred cCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEE---CCCCeEEEcCCCCcEEEEecCCC
Confidence 33444433456778888777665554333211111111112222 45677632 1235789999999887764321
Q ss_pred ------CCCcceeeeee-CCE-EEEEeccCCCCCccceEEEEECCCCcEEEcCCCCC--CCcCceEEEE--CCEEEEEec
Q 016421 175 ------HPRCLFGSGSL-GSI-AIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHS--PRRLCSGFFM--DGKFYVIGG 242 (390)
Q Consensus 175 ------~~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~--~r~~~~~~~~--~~~iyv~GG 242 (390)
....-.+++.- ++. |++ |... .-+.+||+.+++++....... +.....+... +|.|++...
T Consensus 398 ~~~~~l~~~~v~~i~~d~~g~~lWi-gt~~------~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~ 470 (795)
T 4a2l_A 398 ESARGIGSNNIKAVYVDEKKSLVYI-GTHA------GGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL 470 (795)
T ss_dssp ----CCSCSCEEEEEEETTTTEEEE-EETT------TEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES
T ss_pred CcccCCCCccEEEEEEcCCCCEEEE-EeCc------CceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec
Confidence 01111233322 456 665 3321 237899999998877643111 1111122222 567776432
Q ss_pred ccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEE-EECCEEEEEecCCCeEEEEeCCCCceEEccCCCcccc
Q 016421 243 MSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVA-VVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRAD 321 (390)
Q Consensus 243 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~ 321 (390)
..+.+||+.+++|...................+. ..+|+|++... +.+.+||+.++++ .+........
T Consensus 471 --------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~~ 539 (795)
T 4a2l_A 471 --------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI-QKASILPVSN 539 (795)
T ss_dssp --------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE-EECCCSCSCG
T ss_pred --------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE-EEecCCCCCC
Confidence 2478899999999877533110000000001121 23577887654 6799999999888 4431100000
Q ss_pred CCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016421 322 LSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 322 ~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
.......+++. .+|.|++-.. .+ +.+||+++ .+++...
T Consensus 540 l~~~~i~~i~~d~~g~lWigT~-~G-------l~~~d~~~------~~~~~~~ 578 (795)
T 4a2l_A 540 VTKLFTNCIYEASNGIIWVGTR-EG-------FYCFNEKD------KQIKRYN 578 (795)
T ss_dssp GGGSCEEEEEECTTSCEEEEES-SC-------EEEEETTT------TEEEEEC
T ss_pred CCCCeeEEEEECCCCCEEEEeC-CC-------ceeECCCC------CcEEEeC
Confidence 00011123333 3567777543 11 66788776 4565543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.13 Score=45.73 Aligned_cols=153 Identities=10% Similarity=-0.008 Sum_probs=84.0
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEE-cC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM-LP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~ 219 (390)
++.||+.+.. ...+++||+.+++...+.... .....+++. -++++|+....... ....+.+||+.++..+. +.
T Consensus 55 ~g~l~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~~~~~~~~ 129 (333)
T 2dg1_A 55 QGQLFLLDVF--EGNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGDNLQDIIE 129 (333)
T ss_dssp TSCEEEEETT--TCEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSCSCEEEEC
T ss_pred CCCEEEEECC--CCEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCCEEEEEEc
Confidence 5677776542 357899999988876643211 112223332 26778887543211 12468999998887653 22
Q ss_pred CCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECC-EEEEEec
Q 016421 220 SMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDN-QLYAVEY 295 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g-~l~v~gg 295 (390)
...... ....+.. +|++|+.............++.||+.+.+...+..... ....++. -+| .||+.+.
T Consensus 130 ~~~~~~-~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~i~~~~dg~~l~v~~~ 201 (333)
T 2dg1_A 130 DLSTAY-CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS-------VANGIALSTDEKVLWVTET 201 (333)
T ss_dssp SSSSCC-CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES-------SEEEEEECTTSSEEEEEEG
T ss_pred cCccCC-cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCC-------cccceEECCCCCEEEEEeC
Confidence 211111 2222233 67888864321111123568899998877665432100 0012222 244 5888876
Q ss_pred CCCeEEEEeCCC
Q 016421 296 LTNMVKKYDKLK 307 (390)
Q Consensus 296 ~~~~v~~yd~~~ 307 (390)
..+.|++||+.+
T Consensus 202 ~~~~i~~~d~~~ 213 (333)
T 2dg1_A 202 TANRLHRIALED 213 (333)
T ss_dssp GGTEEEEEEECT
T ss_pred CCCeEEEEEecC
Confidence 667899999864
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.066 Score=48.45 Aligned_cols=223 Identities=9% Similarity=-0.021 Sum_probs=101.2
Q ss_pred CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCc-EeecCCCCCCCccee
Q 016421 105 DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRS-WMKCEGMNHPRCLFG 181 (390)
Q Consensus 105 ~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~-W~~~~~~~~~r~~~~ 181 (390)
....+..||..+..|..+..+...... -..+. .++.+++.|+. +..+.+||..+++ |.....+........
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~----v~~~~~s~~~~~l~s~s~--d~~v~vwd~~~~~~~~~~~~~~~~~~~v~ 104 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSDHDKI----VTCVDWAPKSNRIVTCSQ--DRNAYVYEKRPDGTWKQTLVLLRLNRAAT 104 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCCCSSC----EEEEEECTTTCCEEEEET--TSSEEEC------CCCCEEECCCCSSCEE
T ss_pred CCCEEEEEEccCCceEEEEEEecCCce----EEEEEEeCCCCEEEEEeC--CCeEEEEEcCCCCceeeeeEecccCCceE
Confidence 456677888888777766655432211 11222 24555555553 3578888988776 433322222222222
Q ss_pred eeee--CCEEEEEeccCCCCCccceEEEEECCCCc-EEEcCCCCC-CCcCceEEEE--CCEEEEEecccCCCccCceEEE
Q 016421 182 SGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGR-WEMLPSMHS-PRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEE 255 (390)
Q Consensus 182 ~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~ 255 (390)
.+.+ +++.++.|+.++ .+.+||..++. |.....+.. .......+.. ++++.+.|+.++ .+..
T Consensus 105 ~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~------~i~i 172 (377)
T 3dwl_C 105 FVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR------KAYV 172 (377)
T ss_dssp EEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS------CEEE
T ss_pred EEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC------EEEE
Confidence 2222 456666666543 37788887764 433222222 1122222222 566667666542 3666
Q ss_pred EeCCCCceEE----------------ccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCce--EEccCC
Q 016421 256 FDLETRKWRK----------------IEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTW--DVLGRL 316 (390)
Q Consensus 256 yd~~~~~W~~----------------~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W--~~v~~~ 316 (390)
||+.+..... +..+ . +......++. -++++++.++..+.|.+||..+.+- ..+..+
T Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (377)
T 3dwl_C 173 LSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P----SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV 247 (377)
T ss_dssp EEECCSSCC-CCCSCSSCSCCCEEEEEECC-C----CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCE
T ss_pred EEEEecccCCCccccccccccchhhhhhcc-c----CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEee
Confidence 7775433211 1111 1 0000111221 2567777777778999999887653 223322
Q ss_pred CccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 317 PVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
...... .......-++++++.|+.+ .+.+|+...
T Consensus 248 ~~~~~~---v~~~~~s~~~~~l~~~~~~-------~~~~~~~~~ 281 (377)
T 3dwl_C 248 KLSQLP---LRSLLWANESAIVAAGYNY-------SPILLQGNE 281 (377)
T ss_dssp ECSSSC---EEEEEEEETTEEEEEESSS-------SEEEECCCC
T ss_pred cCCCCc---eEEEEEcCCCCEEEEEcCC-------cEEEEEeCC
Confidence 221110 0111223477877777543 244666654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.66 Score=43.13 Aligned_cols=184 Identities=11% Similarity=0.055 Sum_probs=95.1
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++.+++.|+. ...+.+||..+.+-...-..... .-.+++. -++..++.|+.++ .+.+||..+++-...
T Consensus 279 ~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~dg------~i~vwd~~~~~~~~~-- 347 (464)
T 3v7d_B 279 HGNIVVSGSY--DNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDT------TIRIWDLENGELMYT-- 347 (464)
T ss_dssp ETTEEEEEET--TSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETTS------CEEEEETTTTEEEEE--
T ss_pred CCCEEEEEeC--CCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCcEEEE--
Confidence 4444455542 45788999887654322111111 1112222 2455666666543 488999988764321
Q ss_pred CCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeE
Q 016421 221 MHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMV 300 (390)
Q Consensus 221 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v 300 (390)
+.........+..++...+.|+.++ .+..||+.+..-........ .........++++++.|+ .+.+
T Consensus 348 ~~~h~~~v~~~~~~~~~l~s~s~dg------~v~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~-dg~i 414 (464)
T 3v7d_B 348 LQGHTALVGLLRLSDKFLVSAAADG------SIRGWDANDYSRKFSYHHTN------LSAITTFYVSDNILVSGS-ENQF 414 (464)
T ss_dssp ECCCSSCEEEEEECSSEEEEEETTS------EEEEEETTTCCEEEEEECTT------CCCEEEEEECSSEEEEEE-TTEE
T ss_pred EeCCCCcEEEEEEcCCEEEEEeCCC------cEEEEECCCCceeeeecCCC------CccEEEEEeCCCEEEEec-CCeE
Confidence 2222223344556677666666543 47789988765322111111 111234456777777776 6899
Q ss_pred EEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecC
Q 016421 301 KKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 301 ~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~ 358 (390)
.+||..+++-......+.. ..-.++...++.+++.++.++ ...++++|.
T Consensus 415 ~iwd~~~g~~~~~~~~~~~-----~~v~~v~~~~~~l~~~~~~~g----~~~i~~ldf 463 (464)
T 3v7d_B 415 NIYNLRSGKLVHANILKDA-----DQIWSVNFKGKTLVAAVEKDG----QSFLEILDF 463 (464)
T ss_dssp EEEETTTCCEEESCTTTTC-----SEEEEEEEETTEEEEEEEETT----EEEEEEEEC
T ss_pred EEEECCCCcEEehhhccCC-----CcEEEEEecCCEEEEEEEeCC----eEEEEEeec
Confidence 9999998875442112211 111333344666666665442 334556664
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.35 Score=44.58 Aligned_cols=225 Identities=12% Similarity=0.109 Sum_probs=104.8
Q ss_pred EEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCC
Q 016421 100 VYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR 177 (390)
Q Consensus 100 l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r 177 (390)
+...+....+..+|..+.+.... +.. +...-..+. .++.+++.|+. +..+.+||..+.+-.. .+....
T Consensus 123 l~s~s~Dg~i~vwd~~~~~~~~~--l~~----h~~~V~~v~~~~~~~~l~sgs~--D~~i~iwd~~~~~~~~--~~~~h~ 192 (410)
T 1vyh_C 123 MVSASEDATIKVWDYETGDFERT--LKG----HTDSVQDISFDHSGKLLASCSA--DMTIKLWDFQGFECIR--TMHGHD 192 (410)
T ss_dssp EEEEESSSCEEEEETTTCCCCEE--ECC----CSSCEEEEEECTTSSEEEEEET--TSCCCEEETTSSCEEE--CCCCCS
T ss_pred EEEEeCCCeEEEEECCCCcEEEE--Eec----cCCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeE--EEcCCC
Confidence 33333456677888776543211 111 001111122 24566666653 3467778877654322 222211
Q ss_pred cceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceE
Q 016421 178 CLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCG 253 (390)
Q Consensus 178 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 253 (390)
.....+.+ ++..++.|+.+ ..+.+||..++..... +.........+.. ++.+++.|+.++ .+
T Consensus 193 ~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~s~D~------~v 258 (410)
T 1vyh_C 193 HNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDGTLIASCSNDQ------TV 258 (410)
T ss_dssp SCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSSEEEEEETTS------CE
T ss_pred CCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEE--EeCCCccEEEEEECCCCCEEEEEcCCC------eE
Confidence 11222222 45566666644 3588899988764321 1111111222222 566777766543 36
Q ss_pred EEEeCCCCceEEc-cCCCCCC----------C----CcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCc
Q 016421 254 EEFDLETRKWRKI-EGMYPNV----------N----RAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPV 318 (390)
Q Consensus 254 ~~yd~~~~~W~~~-~~~~~~~----------~----~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~ 318 (390)
..||..+...... ....... . .............|.+++.|+..+.|.+||..+.+-.. .+..
T Consensus 259 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~--~~~~ 336 (410)
T 1vyh_C 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM--TLVG 336 (410)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE--EEEC
T ss_pred EEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE--EEEC
Confidence 6688777654321 1100000 0 00000000111235677778778899999988764221 1111
Q ss_pred cccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 319 RADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 319 ~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.. ..-.+++. -+++.++.|+.++ .|.+||..+
T Consensus 337 h~----~~v~~v~~~~~g~~l~s~s~D~------~i~vwd~~~ 369 (410)
T 1vyh_C 337 HD----NWVRGVLFHSGGKFILSCADDK------TLRVWDYKN 369 (410)
T ss_dssp CS----SCEEEEEECSSSSCEEEEETTT------EEEEECCTT
T ss_pred CC----CcEEEEEEcCCCCEEEEEeCCC------eEEEEECCC
Confidence 11 11122222 2566667777553 588999876
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.22 Score=45.12 Aligned_cols=183 Identities=11% Similarity=-0.023 Sum_probs=94.8
Q ss_pred EEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcc-eeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 144 ELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCL-FGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 144 ~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
.+++.|+. +..+.+||..+.+....-........ .+++.. ++.+++.|+.+ ..+.++|..+.....+..
T Consensus 87 ~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~ 158 (383)
T 3ei3_B 87 TTVAVGSK--GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGSVIQVFAK 158 (383)
T ss_dssp TEEEEEEB--TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSCEEEEEEC
T ss_pred CEEEEEcC--CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCCceEEEec
Confidence 34555543 45788899988776544332112222 223332 34666666543 358889998776655433
Q ss_pred CCCCCcCceEE-E-ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCE-EEEEecC
Q 016421 221 MHSPRRLCSGF-F-MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQ-LYAVEYL 296 (390)
Q Consensus 221 ~~~~r~~~~~~-~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~-l~v~gg~ 296 (390)
..........+ . -++++++.|+.+ ..+..||+....-..+..... ....++.. ++. +++.++.
T Consensus 159 ~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~l~s~~~ 225 (383)
T 3ei3_B 159 TDSWDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKLHKA-------KVTHAEFNPRCDWLMATSSV 225 (383)
T ss_dssp CCCSSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEECSSS-------CEEEEEECSSCTTEEEEEET
T ss_pred cCCCCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEeccCCC-------cEEEEEECCCCCCEEEEEeC
Confidence 22211112222 2 256666666543 357789985444333322111 01112222 344 7777777
Q ss_pred CCeEEEEeCCC----CceEEccCCCccccCCCcceeEEEEe--CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 297 TNMVKKYDKLK----NTWDVLGRLPVRADLSNGWGLAFKAC--GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 297 ~~~v~~yd~~~----~~W~~v~~~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.+.+||..+ ........... .-.++... ++.+++.|+.++ .|.+||..+
T Consensus 226 d~~i~iwd~~~~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~~l~~~~~d~------~i~iwd~~~ 282 (383)
T 3ei3_B 226 DATVKLWDLRNIKDKNSYIAEMPHEK-------PVNAAYFNPTDSTKLLTTDQRN------EIRVYSSYD 282 (383)
T ss_dssp TSEEEEEEGGGCCSTTCEEEEEECSS-------CEEEEEECTTTSCEEEEEESSS------EEEEEETTB
T ss_pred CCEEEEEeCCCCCcccceEEEecCCC-------ceEEEEEcCCCCCEEEEEcCCC------cEEEEECCC
Confidence 78999999887 33322211111 11222222 566777776553 577888766
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.63 Score=42.49 Aligned_cols=223 Identities=12% Similarity=0.024 Sum_probs=109.1
Q ss_pred EEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCC
Q 016421 99 WVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHP 176 (390)
Q Consensus 99 ~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~ 176 (390)
.|...+....+..+|..+.+-...- .... ..-..+.. ++.+++.|+. ...+.+||..+.+-.. .+...
T Consensus 111 ~l~~~~~dg~i~iwd~~~~~~~~~~--~~h~----~~v~~~~~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~--~~~~h 180 (420)
T 3vl1_A 111 RFILGTTEGDIKVLDSNFNLQREID--QAHV----SEITKLKFFPSGEALISSSQ--DMQLKIWSVKDGSNPR--TLIGH 180 (420)
T ss_dssp EEEEEETTSCEEEECTTSCEEEEET--TSSS----SCEEEEEECTTSSEEEEEET--TSEEEEEETTTCCCCE--EEECC
T ss_pred EEEEEECCCCEEEEeCCCcceeeec--cccc----CccEEEEECCCCCEEEEEeC--CCeEEEEeCCCCcCce--EEcCC
Confidence 3333334567788888766443321 1110 11112222 4555555543 4578899987654211 11111
Q ss_pred Ccc-eeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEc-CCCCCCCcCceEE----------------------
Q 016421 177 RCL-FGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML-PSMHSPRRLCSGF---------------------- 231 (390)
Q Consensus 177 r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~---------------------- 231 (390)
... .+++.. ++..++.|+.++ .+.+||..+++-... .....+......+
T Consensus 181 ~~~v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 254 (420)
T 3vl1_A 181 RATVTDIAIIDRGRNVLSASLDG------TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE 254 (420)
T ss_dssp SSCEEEEEEETTTTEEEEEETTS------CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred CCcEEEEEEcCCCCEEEEEcCCC------cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceE
Confidence 111 122222 455566666543 378899887753322 1111111111111
Q ss_pred -EECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCE-EEEEecCCCeEEEEeCCCC
Q 016421 232 -FMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQ-LYAVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 232 -~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~-l~v~gg~~~~v~~yd~~~~ 308 (390)
.-++++.+.|+.++ .+..||+.+.+-........ ......++. -++. +++.|+..+.+.+||..+.
T Consensus 255 ~s~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 255 FGTYGKYVIAGHVSG------VITVHNVFSKEQTIQLPSKF-----TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp SSCTTEEEEEEETTS------CEEEEETTTCCEEEEECCTT-----SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred EcCCCCEEEEEcCCC------eEEEEECCCCceeEEccccc-----CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 12566777666543 47789998765322211111 000111222 2344 7777877889999999875
Q ss_pred ce--EEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 309 TW--DVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 309 ~W--~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+- ..+..-.. ..-..+...++++++.|+.++ .|.+|+..+
T Consensus 324 ~~~~~~~~~~~~------~~v~~~~~~~~~~l~s~~~d~------~v~iw~~~~ 365 (420)
T 3vl1_A 324 ECPVGEFLINEG------TPINNVYFAAGALFVSSGFDT------SIKLDIISD 365 (420)
T ss_dssp TSCSEEEEESTT------SCEEEEEEETTEEEEEETTTE------EEEEEEECC
T ss_pred cCchhhhhccCC------CCceEEEeCCCCEEEEecCCc------cEEEEeccC
Confidence 42 22211011 111234455788888888663 578888765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.079 Score=47.45 Aligned_cols=149 Identities=7% Similarity=-0.074 Sum_probs=75.5
Q ss_pred eEEEEECCCCcEeecCCCCCCCcceeee-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCC-cCceEEEE
Q 016421 156 AIWKYSLVFRSWMKCEGMNHPRCLFGSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPR-RLCSGFFM 233 (390)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r-~~~~~~~~ 233 (390)
.++.+|..++++..+...........++ .-++++|+.+... ....+.+||..+++++.+....... .....+..
T Consensus 19 ~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~----~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s 94 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKED----DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD 94 (347)
T ss_dssp EEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEET----TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE
T ss_pred EEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecC----CCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC
Confidence 4677888888876543221111111122 2367788775421 1356889999888877654322111 11223333
Q ss_pred -CC-EEEEEecccCCCccCceEEEEeCC-CCceEEccCCCCCC-CC---cCCCCCE-EE-EECCEEEEEecCCCeEEEEe
Q 016421 234 -DG-KFYVIGGMSSPTVSLTCGEEFDLE-TRKWRKIEGMYPNV-NR---AAQAPPL-VA-VVDNQLYAVEYLTNMVKKYD 304 (390)
Q Consensus 234 -~~-~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~-~~---~~~~~~~-~~-~~~g~l~v~gg~~~~v~~yd 304 (390)
+| .||+.+.. ...+..||+. +.+...+....... .. .....+. ++ .-+|++|+.+...+.+.+||
T Consensus 95 pdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 95 EARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN 168 (347)
T ss_dssp TTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence 45 46665422 2346677774 33444333221100 00 0000111 22 23677888777778899999
Q ss_pred CC-CCceEEcc
Q 016421 305 KL-KNTWDVLG 314 (390)
Q Consensus 305 ~~-~~~W~~v~ 314 (390)
.. +++...+.
T Consensus 169 ~~~~g~~~~~~ 179 (347)
T 3hfq_A 169 VSDAGQLSEQS 179 (347)
T ss_dssp ECTTSCEEEEE
T ss_pred ECCCCcEEEee
Confidence 88 56665543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.18 Score=46.09 Aligned_cols=145 Identities=13% Similarity=0.064 Sum_probs=71.0
Q ss_pred EeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016421 140 AVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 140 ~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
..++. ++.|+. ...+.+||..+.+-...-... ......++. -++..++.|+.++ .+.+||..++.....
T Consensus 215 ~~~~~-~~~~~~--~g~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~ 284 (425)
T 1r5m_A 215 VDDDK-FVIPGP--KGAIFVYQITEKTPTGKLIGH-HGPISVLEFNDTNKLLLSASDDG------TLRIWHGGNGNSQNC 284 (425)
T ss_dssp EETTE-EEEECG--GGCEEEEETTCSSCSEEECCC-SSCEEEEEEETTTTEEEEEETTS------CEEEECSSSBSCSEE
T ss_pred cCCCE-EEEEcC--CCeEEEEEcCCCceeeeeccC-CCceEEEEECCCCCEEEEEcCCC------EEEEEECCCCccceE
Confidence 33555 444442 357889998876432111111 111112222 2455666666432 478898876543221
Q ss_pred CCCCCCCcC-ceEEEE-CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEec
Q 016421 219 PSMHSPRRL-CSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEY 295 (390)
Q Consensus 219 ~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg 295 (390)
+...... ...+.. ++ +++.++.+ ..+..||+.+.+-...-..... ....++. -++++++.++
T Consensus 285 --~~~~~~~i~~~~~~~~~-~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~------~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 285 --FYGHSQSIVSASWVGDD-KVISCSMD------GSVRLWSLKQNTLLALSIVDGV------PIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp --ECCCSSCEEEEEEETTT-EEEEEETT------SEEEEEETTTTEEEEEEECTTC------CEEEEEECTTSSEEEEEE
T ss_pred --ecCCCccEEEEEECCCC-EEEEEeCC------CcEEEEECCCCcEeEecccCCc------cEEEEEEcCCCCEEEEEE
Confidence 1111111 222333 55 55555543 3578899887653322111110 0001222 2567777777
Q ss_pred CCCeEEEEeCCCCc
Q 016421 296 LTNMVKKYDKLKNT 309 (390)
Q Consensus 296 ~~~~v~~yd~~~~~ 309 (390)
..+.|.+||..+..
T Consensus 350 ~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 350 MDGQVNVYDLKKLN 363 (425)
T ss_dssp TTSCEEEEECHHHH
T ss_pred CCCeEEEEECCCCc
Confidence 77889999987654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.53 Score=41.36 Aligned_cols=213 Identities=12% Similarity=0.018 Sum_probs=109.9
Q ss_pred cEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCC
Q 016421 98 HWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN 174 (390)
Q Consensus 98 ~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~ 174 (390)
..||+.. ....++.+|+... .......+.. ...++ .++.+|+.........++.+|+.+++...+...+
T Consensus 43 g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~-------p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~ 114 (306)
T 2p4o_A 43 GTIFVTNHEVGEIVSITPDGN-QQIHATVEGK-------VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP 114 (306)
T ss_dssp SCEEEEETTTTEEEEECTTCC-EEEEEECSSE-------EEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred CCEEEEeCCCCeEEEECCCCc-eEEEEeCCCC-------ceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC
Confidence 4466664 4567888998764 2221112211 11223 3567887653222235888998888876655444
Q ss_pred CCCcceeee-eeCCEEEEEeccCCCCCccceEEEEECCCCc---EEEcCC----CCC-CCcCceEEEE-CCEEEEEeccc
Q 016421 175 HPRCLFGSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGR---WEMLPS----MHS-PRRLCSGFFM-DGKFYVIGGMS 244 (390)
Q Consensus 175 ~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~----~~~-~r~~~~~~~~-~~~iyv~GG~~ 244 (390)
..+...+.+ ..++.+|+.-. ....++++|+.++. |..-+. .+. .......+.. ++.||+.-.
T Consensus 115 ~~~~~~g~~~~~~~~~~v~d~------~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~-- 186 (306)
T 2p4o_A 115 DAIFLNGITPLSDTQYLTADS------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT-- 186 (306)
T ss_dssp TCSCEEEEEESSSSEEEEEET------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET--
T ss_pred CccccCcccccCCCcEEEEEC------CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeC--
Confidence 434333333 23566777632 12468999987652 221110 111 1112222233 458898732
Q ss_pred CCCccCceEEEEeCCC-Cce---EEccCCCCCCCCcCCCCCEEE-EECCEEEEEecCCCeEEEEeCCCCceEEccCCCcc
Q 016421 245 SPTVSLTCGEEFDLET-RKW---RKIEGMYPNVNRAAQAPPLVA-VVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVR 319 (390)
Q Consensus 245 ~~~~~~~~v~~yd~~~-~~W---~~~~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~ 319 (390)
..+.+.+||+.. .+. ..+..... + ..++ .-+|++|+.....+.|.+||++ .+-..+...+.+
T Consensus 187 ----~~~~I~~~~~~~~g~~~~~~~~~~~~~-----P---~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~ 253 (306)
T 2p4o_A 187 ----EKMLLLRIPVDSTDKPGEPEIFVEQTN-----I---DDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG 253 (306)
T ss_dssp ----TTTEEEEEEBCTTSCBCCCEEEEESCC-----C---SSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT
T ss_pred ----CCCEEEEEEeCCCCCCCccEEEeccCC-----C---CCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc
Confidence 245788899865 222 11111111 1 1233 3468899998777889999986 444444333322
Q ss_pred ccCCCcceeEEEEe-----CCEEEEEcCC
Q 016421 320 ADLSNGWGLAFKAC-----GNELLVVGGQ 343 (390)
Q Consensus 320 ~~~~~~~~~~~~~~-----~~~lyv~GG~ 343 (390)
... -.+++.- ++.|||....
T Consensus 254 ~~~----p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 254 VIG----STAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CTT----EEEEEECCSTTTTTEEEEEECT
T ss_pred cCC----ceEEEEecccCCCCEEEEECCC
Confidence 111 0223222 2689998763
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.53 Score=43.34 Aligned_cols=146 Identities=14% Similarity=0.068 Sum_probs=77.4
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcce-eeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLF-GSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.+++.|+. +..+.+||..+++.... +....... +++. -++.+++.|+.++. +.+||..+..-..
T Consensus 119 ~~~~l~s~s~--Dg~i~vwd~~~~~~~~~--l~~h~~~V~~v~~~~~~~~l~sgs~D~~------i~iwd~~~~~~~~-- 186 (410)
T 1vyh_C 119 VFSVMVSASE--DATIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSADMT------IKLWDFQGFECIR-- 186 (410)
T ss_dssp SSSEEEEEES--SSCEEEEETTTCCCCEE--ECCCSSCEEEEEECTTSSEEEEEETTSC------CCEEETTSSCEEE--
T ss_pred CCCEEEEEeC--CCeEEEEECCCCcEEEE--EeccCCcEEEEEEcCCCCEEEEEeCCCe------EEEEeCCCCceeE--
Confidence 4556666653 45788999887654322 11111111 2221 25667777776543 6678887665432
Q ss_pred CCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEc-cCCCCCCCCcCCCCCEEE-EECCEEEEEec
Q 016421 220 SMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKI-EGMYPNVNRAAQAPPLVA-VVDNQLYAVEY 295 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg 295 (390)
.+.........+.+ ++..++.|+.+ ..+..||+.+..-... ..... ....+. ..++.+++.|+
T Consensus 187 ~~~~h~~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~~~~~~~h~~-------~v~~~~~~~~g~~l~s~s 253 (410)
T 1vyh_C 187 TMHGHDHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKTFTGHRE-------WVRMVRPNQDGTLIASCS 253 (410)
T ss_dssp CCCCCSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEEEECCSS-------CEEEEEECTTSSEEEEEE
T ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEeCCCc-------cEEEEEECCCCCEEEEEc
Confidence 22222222223333 56666666654 3577899988754321 11110 000111 12567777787
Q ss_pred CCCeEEEEeCCCCceEE
Q 016421 296 LTNMVKKYDKLKNTWDV 312 (390)
Q Consensus 296 ~~~~v~~yd~~~~~W~~ 312 (390)
.-+.|.+||..+.+...
T Consensus 254 ~D~~v~vwd~~~~~~~~ 270 (410)
T 1vyh_C 254 NDQTVRVWVVATKECKA 270 (410)
T ss_dssp TTSCEEEEETTTCCEEE
T ss_pred CCCeEEEEECCCCceee
Confidence 77889999988776443
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=96.24 E-value=0.09 Score=46.18 Aligned_cols=215 Identities=12% Similarity=0.105 Sum_probs=108.2
Q ss_pred cEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCC-
Q 016421 98 HWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH- 175 (390)
Q Consensus 98 ~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~- 175 (390)
..||... ....++.||+.+.....+. .+... ....+..++.+++.. ...+++||+.+++++.+.....
T Consensus 25 ~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~~-----~~i~~~~dG~l~v~~----~~~l~~~d~~~g~~~~~~~~~~~ 94 (297)
T 3g4e_A 25 NSLLFVDIPAKKVCRWDSFTKQVQRVT-MDAPV-----SSVALRQSGGYVATI----GTKFCALNWKEQSAVVLATVDND 94 (297)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEEEE-CSSCE-----EEEEEBTTSSEEEEE----TTEEEEEETTTTEEEEEEECCTT
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEe-CCCce-----EEEEECCCCCEEEEE----CCeEEEEECCCCcEEEEEecCCC
Confidence 4566554 3567889999877543322 11110 011222355666543 3578999999988876644321
Q ss_pred -CCcce-ee-eeeCCEEEEEeccCCC-----CCccceEEEEECCCCcEEEc-CCCCCCCcCceEEEE--CC-EEEEEecc
Q 016421 176 -PRCLF-GS-GSLGSIAIIAGGSDKN-----GHVLKSAELYDSTTGRWEML-PSMHSPRRLCSGFFM--DG-KFYVIGGM 243 (390)
Q Consensus 176 -~r~~~-~~-~~~~~~lyv~GG~~~~-----~~~~~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~~~--~~-~iyv~GG~ 243 (390)
+.... .+ +.-++++|+..-.... ......++.+|+. +....+ ..+. ....... ++ .+|+....
T Consensus 95 ~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~----~pngi~~spdg~~lyv~~~~ 169 (297)
T 3g4e_A 95 KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVD----ISNGLDWSLDHKIFYYIDSL 169 (297)
T ss_dssp CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEES----BEEEEEECTTSCEEEEEEGG
T ss_pred CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccc----cccceEEcCCCCEEEEecCC
Confidence 11112 22 2225777774311110 0123468888875 333322 1111 1122333 44 58887432
Q ss_pred cCCCccCceEEEEeC--CCCceEE---ccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCC
Q 016421 244 SSPTVSLTCGEEFDL--ETRKWRK---IEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLP 317 (390)
Q Consensus 244 ~~~~~~~~~v~~yd~--~~~~W~~---~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~ 317 (390)
...+++||. .+..... +..++... ...-.+++ .+|.||+.....+.|.+||+++.+-...-.+|
T Consensus 170 ------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~----~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 170 ------SYSVDAFDYDLQTGQISNRRSVYKLEKEE----QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp ------GTEEEEEEECTTTCCEEEEEEEEECCGGG----CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred ------CCcEEEEeccCCCCcccCcEEEEECCCCC----CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 345777765 5555431 11111100 00012333 46889988765678999999977655433344
Q ss_pred ccccCCCcceeEEEEeC----CEEEEEcCCC
Q 016421 318 VRADLSNGWGLAFKACG----NELLVVGGQR 344 (390)
Q Consensus 318 ~~~~~~~~~~~~~~~~~----~~lyv~GG~~ 344 (390)
... ...+..+ +.|||.....
T Consensus 240 ~~~-------~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 240 VDK-------TTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp SSB-------EEEEEEESGGGCEEEEEEBCT
T ss_pred CCC-------ceEEEEeCCCCCEEEEEcCCc
Confidence 221 1222332 5899988754
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.38 Score=42.72 Aligned_cols=235 Identities=11% Similarity=0.060 Sum_probs=107.5
Q ss_pred eCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCC-----cEeecCCCCCC
Q 016421 104 CDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFR-----SWMKCEGMNHP 176 (390)
Q Consensus 104 ~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~-----~W~~~~~~~~~ 176 (390)
+....+..+|........+..+... .+...-..+. .++.+++.|+. +..+.+||.... .+..+..+...
T Consensus 31 ~~D~~i~lw~~~~~~~~~~~~~~~~--~h~~~v~~v~~sp~~~~las~s~--D~~v~iw~~~~~~~~~~~~~~~~~~~~h 106 (330)
T 2hes_X 31 STDRKIKLVSVKYDDFTLIDVLDET--AHKKAIRSVAWRPHTSLLAAGSF--DSTVSIWAKEESADRTFEMDLLAIIEGH 106 (330)
T ss_dssp ESSSCEEEEECSSSCCEEEEEECTT--CCCSCEEEEEECTTSSEEEEEET--TSCEEEEEC-------CCCEEEEEEC--
T ss_pred cCCCEEEEEEecCCCeEEEEEEecC--CccCCEEEEEECCCCCEEEEEeC--CCcEEEEEcccCcCccccceeEEEEcCC
Confidence 3456677888776543322211110 0111111222 24566666653 356777876432 12221111111
Q ss_pred Ccceeeeee--CCEEEEEeccCCCCCccceEEEEECCC--CcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccC
Q 016421 177 RCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTT--GRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSL 250 (390)
Q Consensus 177 r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 250 (390)
......+.+ +++.++.|+.++ .+.++|... ..++.+..+.........+.. ++.+++.|+.++
T Consensus 107 ~~~V~~v~~sp~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~----- 175 (330)
T 2hes_X 107 ENEVKGVAWSNDGYYLATCSRDK------SVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD----- 175 (330)
T ss_dssp --CEEEEEECTTSCEEEEEETTS------CEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS-----
T ss_pred CCcEEEEEECCCCCEEEEEeCCC------EEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC-----
Confidence 111112222 566666676543 478888742 234433222222222222332 566666666543
Q ss_pred ceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-C--CEEEEEecCCCeEEEEeCCCC------ceEEccCCCcccc
Q 016421 251 TCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-D--NQLYAVEYLTNMVKKYDKLKN------TWDVLGRLPVRAD 321 (390)
Q Consensus 251 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~--g~l~v~gg~~~~v~~yd~~~~------~W~~v~~~~~~~~ 321 (390)
.+..+|..+..|..+..+..... ....+... + +..++.|+.-+.|.+||..+. .|..+..++....
T Consensus 176 -~i~iW~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~ 250 (330)
T 2hes_X 176 -TVRIWKDYDDDWECVAVLNGHEG----TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK 250 (330)
T ss_dssp -CEEEEEEETTEEEEEEEECCCSS----CEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS
T ss_pred -eEEEEECCCCCeeEEEEccCCCC----cEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc
Confidence 35667777777765544432110 00112222 2 345556666677888876542 4655544432111
Q ss_pred CCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016421 322 LSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 322 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
..-.++....+.+++.||.++ .|.+||..+ ..|+.+.
T Consensus 251 ---~~v~~v~~s~~~~l~s~~~dg------~v~iw~~~~------~~~~~~~ 287 (330)
T 2hes_X 251 ---RQVYNVAWGFNGLIASVGADG------VLAVYEEVD------GEWKVFA 287 (330)
T ss_dssp ---SCEEEEEECTTSCEEEEETTS------CEEEEEEET------TEEEEEE
T ss_pred ---cceEEEEEcCCCEEEEEeCCC------EEEEEEcCC------CceEEEe
Confidence 111223233445666666553 377888876 4575543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.23 Score=43.90 Aligned_cols=240 Identities=15% Similarity=0.168 Sum_probs=114.4
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe----CCEEEEEcccccCCeEEEEECCCCcEeecCCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV----GSELLVFGRELFDFAIWKYSLVFRSWMKCEGM 173 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~----~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~ 173 (390)
..|...+....+..+|..+.....+..+..+. ..-..+.. ++.+++.|+ .+..+.+||..+.+|..+..+
T Consensus 26 ~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~----~~V~~v~~~~~~~~~~l~s~s--~D~~v~iWd~~~~~~~~~~~~ 99 (316)
T 3bg1_A 26 TRLATCSSDRSVKIFDVRNGGQILIADLRGHE----GPVWQVAWAHPMYGNILASCS--YDRKVIIWREENGTWEKSHEH 99 (316)
T ss_dssp CEEEEEETTTEEEEEEEETTEEEEEEEEECCS----SCEEEEEECCGGGSSCEEEEE--TTSCEEEECCSSSCCCEEEEE
T ss_pred CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCC----ccEEEEEeCCCCCCCEEEEEE--CCCEEEEEECCCCcceEEEEc
Confidence 33444444567778887665432222121111 11112222 144555554 345788999988766543322
Q ss_pred CCCCcceeeeee--C--CEEEEEeccCCCCCccceEEEEECCCC-cEEEcCCCCCCCcCceEEEE---------------
Q 016421 174 NHPRCLFGSGSL--G--SIAIIAGGSDKNGHVLKSAELYDSTTG-RWEMLPSMHSPRRLCSGFFM--------------- 233 (390)
Q Consensus 174 ~~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~r~~~~~~~~--------------- 233 (390)
.........+.+ + +.+++.|+.++ .+.++|..++ .|.....+.........+..
T Consensus 100 ~~h~~~V~~v~~~p~~~g~~lasgs~D~------~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 173 (316)
T 3bg1_A 100 AGHDSSVNSVCWAPHDYGLILACGSSDG------AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSG 173 (316)
T ss_dssp CCCSSCCCEEEECCTTTCSCEEEECSSS------CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCS
T ss_pred cCCCCceEEEEECCCCCCcEEEEEcCCC------CEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccc
Confidence 222211112222 2 55666676543 3677777665 57543222111111111111
Q ss_pred ----CCEEEEEecccCCCccCceEEEEeCCC-CceEEccCCCCCCCCcCCCCCEEEEE-C----CEEEEEecCCCeEEEE
Q 016421 234 ----DGKFYVIGGMSSPTVSLTCGEEFDLET-RKWRKIEGMYPNVNRAAQAPPLVAVV-D----NQLYAVEYLTNMVKKY 303 (390)
Q Consensus 234 ----~~~iyv~GG~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~-~----g~l~v~gg~~~~v~~y 303 (390)
.+++++.|+.++ .+..+|..+ ..|..+..+..... ....++.. + +.+++.++.-+.|.+|
T Consensus 174 ~~~~~~~~l~sgs~D~------~v~lWd~~~~~~~~~~~~l~~h~~----~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 174 QKPNYIKRFASGGCDN------LIKLWKEEEDGQWKEEQKLEAHSD----WVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp CCCCCCCBEECCBTTS------BCCEEEECTTSCEEEEECCBCCSS----CEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred cCccccceEEEecCCC------eEEEEEeCCCCccceeeecccCCC----ceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 124555555432 344567653 45766554433110 00112211 2 2567777777889999
Q ss_pred eCCC---CceEE--ccCCCccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccCc
Q 016421 304 DKLK---NTWDV--LGRLPVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQH 377 (390)
Q Consensus 304 d~~~---~~W~~--v~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~ 377 (390)
|..+ +.|.. +.... ..-.++. .-++++++.||.++ .|.+|+...+ ..|..+..+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~-------~~v~~v~~sp~g~~las~~~D~------~v~lw~~~~~-----g~~~~~~~~~~ 305 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFN-------DVVWHVSWSITANILAVSGGDN------KVTLWKESVD-----GQWVCISDVNK 305 (316)
T ss_dssp ECSSTTCCCCBCCEEEECS-------SCEEEEEECTTTCCEEEEESSS------CEEEEEECTT-----SCEEEEEECC-
T ss_pred EccCccccchhhhhhhcCC-------CcEEEEEEcCCCCEEEEEcCCC------eEEEEEECCC-----CcEEEeeeccC
Confidence 9876 33431 11111 1111222 23577777787664 3778887642 47998887753
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.19 E-value=1.2 Score=44.40 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=70.5
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCc--EeecCCCCCC--------CcceeeeeeCCEEEEEeccCCCCCccceEEEE
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHP--------RCLFGSGSLGSIAIIAGGSDKNGHVLKSAELY 208 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~y 208 (390)
++.++.||+.+. ...++.+|..|++ |+.-...+.. ....+.++.+++||+... ...+..+
T Consensus 67 ~v~~g~vyv~~~---~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------dg~l~Al 136 (689)
T 1yiq_A 67 IVVDGVMYTTGP---FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------DGRLEAI 136 (689)
T ss_dssp EEETTEEEEECG---GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEEEE
T ss_pred EEECCEEEEEcC---CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------CCEEEEE
Confidence 567899998765 3468899998775 8764332210 011234566888888642 2458999
Q ss_pred ECCCCc--EEEcCC-CCC--CCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc--eEE
Q 016421 209 DSTTGR--WEMLPS-MHS--PRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRK 265 (390)
Q Consensus 209 d~~t~~--W~~~~~-~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~ 265 (390)
|..|++ |+.-.. -+. .....+-++.++.+|+-.+.... .....++.||..|.+ |+.
T Consensus 137 Da~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 137 DAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEF-GVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp ETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEE
T ss_pred ECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCcc-CCCCEEEEEECCCCcEEEEe
Confidence 999886 876432 111 11122345679999884332111 124578999999876 875
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=1 Score=43.78 Aligned_cols=116 Identities=11% Similarity=0.096 Sum_probs=66.6
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCc--EeecCCCCCC---Cc---ceeeeeeCCEEEEEeccCCCCCccceEEEEEC
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHP---RC---LFGSGSLGSIAIIAGGSDKNGHVLKSAELYDS 210 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~---r~---~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~ 210 (390)
+..++.||+.+.. ..++.+|..|++ |+.-...+.. .+ ..+.++.+++||+... ...+..+|.
T Consensus 65 ~v~~g~vyv~~~~---~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~l~AlD~ 134 (582)
T 1flg_A 65 IVSDGVIYVTASY---SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DASVVALNK 134 (582)
T ss_dssp EEETTEEEEEETT---TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTEEEEEES
T ss_pred EEECCEEEEEcCC---CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CCEEEEEEC
Confidence 5678999987653 248899998775 8664432211 11 1234567889988532 245899999
Q ss_pred CCCc--EEEcCCCCCCC--cCceEEEECC------EEEEEecccCCCccCceEEEEeCCCCc--eEE
Q 016421 211 TTGR--WEMLPSMHSPR--RLCSGFFMDG------KFYVIGGMSSPTVSLTCGEEFDLETRK--WRK 265 (390)
Q Consensus 211 ~t~~--W~~~~~~~~~r--~~~~~~~~~~------~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~ 265 (390)
.|++ |+.-..-+... ...+-++.++ .||+-..... ......++.||..+.+ |+.
T Consensus 135 ~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e-~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 135 NTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDE-FGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp SSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGG-GCCBCEEEEECTTTCCEEEEE
T ss_pred CCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccc-cCCCCEEEEEECCCCCEEeec
Confidence 9886 87632211111 1122334566 6665321110 1124568899998765 864
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.54 Score=40.53 Aligned_cols=189 Identities=11% Similarity=0.098 Sum_probs=99.8
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCC---CC-Ccceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcE
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN---HP-RCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRW 215 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~---~~-r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (390)
++.+|+.... ...+.+||+.......++... .. ....+++. -++.+|+.+... ...+.+||.....-
T Consensus 40 ~g~l~v~~~~--~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-----~~~i~~~d~~g~~~ 112 (286)
T 1q7f_A 40 QNDIIVADTN--NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-----THQIQIYNQYGQFV 112 (286)
T ss_dssp TCCEEEEEGG--GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-----GCEEEEECTTSCEE
T ss_pred CCCEEEEECC--CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-----CCEEEEECCCCcEE
Confidence 5678876532 357889998755444433211 11 12223444 368999886321 24588899554433
Q ss_pred EEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEE
Q 016421 216 EMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYA 292 (390)
Q Consensus 216 ~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v 292 (390)
..+..... .....+.+ +|++|+.... ...+.+||+.......+...... .....++. -+|++|+
T Consensus 113 ~~~~~~~~--~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~~~~-----~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 113 RKFGATIL--QHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKHL-----EFPNGVVVNDKQEIFI 179 (286)
T ss_dssp EEECTTTC--SCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTTC-----SSEEEEEECSSSEEEE
T ss_pred EEecCccC--CCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCCCcc-----CCcEEEEECCCCCEEE
Confidence 33322111 11223333 6788887532 24688899876544444221110 00112332 3589999
Q ss_pred EecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 293 VEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 293 ~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+...+.|.+||+..+.-..+..-.. .. .-.+++. -+|+||+.....+ ..|.+||++.
T Consensus 180 ~~~~~~~i~~~~~~g~~~~~~~~~g~-~~----~p~~i~~d~~G~l~v~~~~~~-----~~i~~~~~~g 238 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEGQYLRQIGGEGI-TN----YPIGVGINSNGEILIADNHNN-----FNLTIFTQDG 238 (286)
T ss_dssp EEGGGTEEEEEETTCCEEEEESCTTT-SC----SEEEEEECTTCCEEEEECSSS-----CEEEEECTTS
T ss_pred EECCCCEEEEEcCCCCEEEEEccCCc-cC----CCcEEEECCCCCEEEEeCCCC-----EEEEEECCCC
Confidence 88777899999987665444432110 00 0022323 3678888875331 1477888754
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.31 Score=41.70 Aligned_cols=223 Identities=12% Similarity=-0.012 Sum_probs=108.7
Q ss_pred CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCC-CcEeecCCCCCCCcceeee-e
Q 016421 107 RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVF-RSWMKCEGMNHPRCLFGSG-S 184 (390)
Q Consensus 107 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t-~~W~~~~~~~~~r~~~~~~-~ 184 (390)
..++.+|+.+.+...+...+.. .....+..++..+++++ ...++++|..+ ++...+...........++ .
T Consensus 22 ~~i~~~d~~~~~~~~~~~~~~~-----v~~~~~spdg~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQTPEL-----FEAPNWSPDGKYLLLNS---EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp EEEEEEETTTTEEEEEEEESSC-----CEEEEECTTSSEEEEEE---TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred eeEEEEeCCCCceeeeccCCcc-----eEeeEECCCCCEEEEEc---CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 3456678877665543221111 00112233555555553 35899999998 7766554332211111122 2
Q ss_pred eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CCE-EEEEecccCCCccCceEEEEeCCCCc
Q 016421 185 LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGK-FYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 185 ~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
-+++.+++++.... ....++.+|..++.-+.+..... ....+.. +++ |++.++.++ ...++.+|..+..
T Consensus 94 pdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 94 PDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGV 164 (297)
T ss_dssp TTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEETT----EEEEEEEETTTCC
T ss_pred CCCCEEEEEEeCCC--CcceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECCCC----ceEEEEEECCCCc
Confidence 25555555553322 24678999988877655543221 1122222 444 554554432 2357777888777
Q ss_pred eEEccCCCCCCCCcCCCCCEEEE-ECCE-EEEEec--CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEE-EeCCEE
Q 016421 263 WRKIEGMYPNVNRAAQAPPLVAV-VDNQ-LYAVEY--LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK-ACGNEL 337 (390)
Q Consensus 263 W~~~~~~~~~~~~~~~~~~~~~~-~~g~-l~v~gg--~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~-~~~~~l 337 (390)
...+....... ..+.. -+|+ |++.+. ....++.++..+.....+....... ..+. .-+++.
T Consensus 165 ~~~~~~~~~~~-------~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~s~dg~~ 230 (297)
T 2ojh_A 165 ETRLTHGEGRN-------DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGD-------WFPHPSPSGDK 230 (297)
T ss_dssp EEECCCSSSCE-------EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEE-------EEEEECTTSSE
T ss_pred ceEcccCCCcc-------ccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCccc-------CCeEECCCCCE
Confidence 76655433211 01222 2454 444442 2456777777777766654322110 1111 224554
Q ss_pred EEEcCCCCCC-----CCeEEEeeecCCC
Q 016421 338 LVVGGQRGPE-----GENVVLNSWCPKS 360 (390)
Q Consensus 338 yv~GG~~~~~-----~~~~~i~~y~~~~ 360 (390)
+++++..+.. .....+++||.++
T Consensus 231 l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 231 VVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred EEEEEcCCCCCcccccCceEEEEEecCC
Confidence 4444433211 0235689999887
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.31 Score=44.57 Aligned_cols=190 Identities=11% Similarity=0.003 Sum_probs=94.8
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEee-----cCCCCCCCcce-eeeee-CC-EEEEEeccCCCCCccceEEEEECCCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMK-----CEGMNHPRCLF-GSGSL-GS-IAIIAGGSDKNGHVLKSAELYDSTTG 213 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~-----~~~~~~~r~~~-~~~~~-~~-~lyv~GG~~~~~~~~~~~~~yd~~t~ 213 (390)
++.+++.|+. +..+.+||..++.... +..+....... .++.. ++ .+++.|+.++ .+.+||..++
T Consensus 93 ~~~~l~s~s~--dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg------~i~iwd~~~~ 164 (402)
T 2aq5_A 93 NDNVIASGSE--DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN------VILVWDVGTG 164 (402)
T ss_dssp CTTEEEEEET--TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS------CEEEEETTTT
T ss_pred CCCEEEEEeC--CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC------EEEEEECCCC
Confidence 4566666653 4578899988764421 11111111111 22222 22 4666666543 4889999988
Q ss_pred cEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEcc-CCCCCCCCcCCCCCEEEEECCEE
Q 016421 214 RWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIE-GMYPNVNRAAQAPPLVAVVDNQL 290 (390)
Q Consensus 214 ~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~g~l 290 (390)
+....-...........+.. ++++++.|+.+ ..+..||+.+.+-...- ..... .........-++++
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 234 (402)
T 2aq5_A 165 AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGTVVAEKDRPHEG----TRPVHAVFVSEGKI 234 (402)
T ss_dssp EEEEEECTTTCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTEEEEEEECSSCS----SSCCEEEECSTTEE
T ss_pred CccEEEecCCCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCceeeeeccCCCC----CcceEEEEcCCCcE
Confidence 75432110111112222333 66666766643 35788999887643221 11110 00111223346788
Q ss_pred EEEe---cCCCeEEEEeCCCCce-EEccCCCccccCCCcceeEEEEe--CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 291 YAVE---YLTNMVKKYDKLKNTW-DVLGRLPVRADLSNGWGLAFKAC--GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 291 ~v~g---g~~~~v~~yd~~~~~W-~~v~~~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
++.| +..+.+.+||..+..- .....+.... ....+... +..|++.|+.++ .|.+||..+
T Consensus 235 l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~g~~dg------~i~i~d~~~ 299 (402)
T 2aq5_A 235 LTTGFSRMSERQVALWDTKHLEEPLSLQELDTSS-----GVLLPFFDPDTNIVYLCGKGDS------SIRYFEITS 299 (402)
T ss_dssp EEEEECTTCCEEEEEEETTBCSSCSEEEECCCCS-----SCEEEEEETTTTEEEEEETTCS------CEEEEEECS
T ss_pred EEEeccCCCCceEEEEcCccccCCceEEeccCCC-----ceeEEEEcCCCCEEEEEEcCCC------eEEEEEecC
Confidence 8887 5678899999877542 1111111111 01122222 445667775443 477888876
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=96.10 E-value=0.72 Score=41.66 Aligned_cols=115 Identities=11% Similarity=0.017 Sum_probs=58.1
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC-CCC---CcCceEEEE--CCEEEEEecccCCCccCceEEEEeCC
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM-HSP---RRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLE 259 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-~~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~ 259 (390)
++ +++.|+.+ ..+.+||..++.-...-.. ... ......+.. ++++++.|+.++ ....+..||+.
T Consensus 197 ~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~---~~g~i~i~d~~ 266 (397)
T 1sq9_A 197 RG-LIATGFNN------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN---SFGCITLYETE 266 (397)
T ss_dssp TS-EEEEECTT------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET---TEEEEEEEETT
T ss_pred Cc-eEEEEeCC------CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC---CCceEEEEECC
Confidence 45 66666543 3588999987764332111 001 112223333 566666666541 11467889988
Q ss_pred CCceEEccCCCCCC-------CCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCce
Q 016421 260 TRKWRKIEGMYPNV-------NRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTW 310 (390)
Q Consensus 260 ~~~W~~~~~~~~~~-------~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W 310 (390)
+.+-...-..+... ..+......++. -++++++.++..+.|.+||..+.+-
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 267 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 325 (397)
T ss_dssp TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Confidence 76532221110000 000101112222 2567777787788999999987653
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=96.07 E-value=0.66 Score=40.50 Aligned_cols=187 Identities=9% Similarity=-0.003 Sum_probs=97.7
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++.+|+..- ....+++||+.++....... +.. ..+++. -++++|+.. ...+.+||+.+++++.+..
T Consensus 24 ~~~l~~~d~--~~~~i~~~d~~~~~~~~~~~-~~~--~~~i~~~~dG~l~v~~--------~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 24 SNSLLFVDI--PAKKVCRWDSFTKQVQRVTM-DAP--VSSVALRQSGGYVATI--------GTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp TTEEEEEET--TTTEEEEEETTTCCEEEEEC-SSC--EEEEEEBTTSSEEEEE--------TTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEEC--CCCEEEEEECCCCcEEEEeC-CCc--eEEEEECCCCCEEEEE--------CCeEEEEECCCCcEEEEEe
Confidence 467777643 24578999999886644322 211 112222 256666653 1358899999998877644
Q ss_pred CCC--CCcCceEEEE--CCEEEEEecccCC-----CccCceEEEEeCCCCceEEccC-CCCCCCCcCCCCCEEEEE-CC-
Q 016421 221 MHS--PRRLCSGFFM--DGKFYVIGGMSSP-----TVSLTCGEEFDLETRKWRKIEG-MYPNVNRAAQAPPLVAVV-DN- 288 (390)
Q Consensus 221 ~~~--~r~~~~~~~~--~~~iyv~GG~~~~-----~~~~~~v~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~-~g- 288 (390)
... +......+.+ +|++|+..-.... ......++++|+.. +...+.. +.. ...++.. ++
T Consensus 91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~--------pngi~~spdg~ 161 (297)
T 3g4e_A 91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDI--------SNGLDWSLDHK 161 (297)
T ss_dssp CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESB--------EEEEEECTTSC
T ss_pred cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeecccc--------ccceEEcCCCC
Confidence 322 1111222333 6788774321110 01234688888753 3333221 111 0123332 34
Q ss_pred EEEEEecCCCeEEEEeC--CCCceEE---ccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 289 QLYAVEYLTNMVKKYDK--LKNTWDV---LGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 289 ~l~v~gg~~~~v~~yd~--~~~~W~~---v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.||+.+...+.|++||. ++..... +..++..... . -+++. -+|+||+.....+ .|.+||+++
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~---p-~g~~~d~~G~lwva~~~~~------~v~~~d~~t 229 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQI---P-DGMCIDAEGKLWVACYNGG------RVIRLDPVT 229 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCE---E-EEEEEBTTSCEEEEEETTT------EEEEECTTT
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCC---C-CeeEECCCCCEEEEEcCCC------EEEEEcCCC
Confidence 68888877789999986 4554421 2222211110 0 12222 3678888753221 488999986
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=96.04 E-value=0.29 Score=42.80 Aligned_cols=194 Identities=13% Similarity=0.111 Sum_probs=100.1
Q ss_pred CCEEEEEcc-----cccCCeEEEEECCCCcEeecCCCC---CCCcceeeee-eC-CEEEEEeccCCCCCccceEEEEECC
Q 016421 142 GSELLVFGR-----ELFDFAIWKYSLVFRSWMKCEGMN---HPRCLFGSGS-LG-SIAIIAGGSDKNGHVLKSAELYDST 211 (390)
Q Consensus 142 ~~~iy~~Gg-----~~~~~~~~~yd~~t~~W~~~~~~~---~~r~~~~~~~-~~-~~lyv~GG~~~~~~~~~~~~~yd~~ 211 (390)
++.+|+.+. ......+++||+.++++..+.... ......+++. -+ +.+|+.... ..+.+||+.
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~-------~~l~~~d~~ 100 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-------LGLLVVQTD 100 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-------TEEEEEETT
T ss_pred CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-------CCEEEEeCC
Confidence 567887710 112457899999888886553210 0011123333 24 788887541 258899998
Q ss_pred CCcEEEc-CCCCCC--CcCceEEEE--CCEEEEEecccC---------CCccCceEEEEeCCCCceEEccCCCCCCCCcC
Q 016421 212 TGRWEML-PSMHSP--RRLCSGFFM--DGKFYVIGGMSS---------PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAA 277 (390)
Q Consensus 212 t~~W~~~-~~~~~~--r~~~~~~~~--~~~iyv~GG~~~---------~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~ 277 (390)
++.+.+ ...... ......+.. +|++|+...... .......+++||+. .+...+.....
T Consensus 101 -g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~------ 172 (314)
T 1pjx_A 101 -GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ------ 172 (314)
T ss_dssp -SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES------
T ss_pred -CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC------
Confidence 777665 332211 111222333 678888754320 01112468889987 66554321100
Q ss_pred CCCCEEEEE-----CC-EEEEEecCCCeEEEEeCC-CCceEE---ccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCC
Q 016421 278 QAPPLVAVV-----DN-QLYAVEYLTNMVKKYDKL-KNTWDV---LGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGP 346 (390)
Q Consensus 278 ~~~~~~~~~-----~g-~l~v~gg~~~~v~~yd~~-~~~W~~---v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~ 346 (390)
....++.. +| .+|+.+...+.+++||+. +++... +..++..... .. ..++. -+|+||+.....+
T Consensus 173 -~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~--~p-~~i~~d~~G~l~v~~~~~~- 247 (314)
T 1pjx_A 173 -FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG--GA-DGMDFDEDNNLLVANWGSS- 247 (314)
T ss_dssp -SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC--EE-EEEEEBTTCCEEEEEETTT-
T ss_pred -CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCC--CC-CceEECCCCCEEEEEcCCC-
Confidence 00123333 34 578877667899999976 444332 1122211000 00 12222 3678888753221
Q ss_pred CCCeEEEeeecCCC
Q 016421 347 EGENVVLNSWCPKS 360 (390)
Q Consensus 347 ~~~~~~i~~y~~~~ 360 (390)
.|.+||+++
T Consensus 248 -----~i~~~d~~~ 256 (314)
T 1pjx_A 248 -----HIEVFGPDG 256 (314)
T ss_dssp -----EEEEECTTC
T ss_pred -----EEEEEcCCC
Confidence 477888875
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.69 Score=40.43 Aligned_cols=224 Identities=11% Similarity=0.089 Sum_probs=105.7
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCC
Q 016421 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHP 176 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~ 176 (390)
...|...+....+..+|..+..-... +..... ......+..++.+++.|+. +..+.+||..+++-... +...
T Consensus 25 ~~~l~s~~~dg~v~lWd~~~~~~~~~--~~~~~~--~v~~~~~~~~~~~l~s~s~--d~~i~vwd~~~~~~~~~--~~~h 96 (304)
T 2ynn_A 25 EPWVLTTLYSGRVELWNYETQVEVRS--IQVTET--PVRAGKFIARKNWIIVGSD--DFRIRVFNYNTGEKVVD--FEAH 96 (304)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEE--EECCSS--CEEEEEEEGGGTEEEEEET--TSEEEEEETTTCCEEEE--EECC
T ss_pred CCEEEEEcCCCcEEEEECCCCceeEE--eeccCC--cEEEEEEeCCCCEEEEECC--CCEEEEEECCCCcEEEE--EeCC
Confidence 34455444566778888876643221 111000 0001122334555555543 45788999887753221 1111
Q ss_pred Ccce-eeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE---CCEEEEEecccCCCccCc
Q 016421 177 RCLF-GSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM---DGKFYVIGGMSSPTVSLT 251 (390)
Q Consensus 177 r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~ 251 (390)
.... +++. -++.+++.|+.++ .+.++|..++.= ....+.........+.. ++.+++.|+.++
T Consensus 97 ~~~v~~~~~~~~~~~l~sgs~D~------~v~lWd~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~------ 163 (304)
T 2ynn_A 97 PDYIRSIAVHPTKPYVLSGSDDL------TVKLWNWENNWA-LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR------ 163 (304)
T ss_dssp SSCEEEEEECSSSSEEEEEETTS------CEEEEEGGGTTE-EEEEECCCCSCEEEEEECTTCTTEEEEEETTS------
T ss_pred CCcEEEEEEcCCCCEEEEECCCC------eEEEEECCCCcc-hhhhhcccCCcEEEEEECCCCCCEEEEEeCCC------
Confidence 1111 2222 2455666666543 377888765521 11111111111222332 446667666543
Q ss_pred eEEEEeCCCCceE-EccCCCCCCCCcCCCCCEEEEE----CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcc
Q 016421 252 CGEEFDLETRKWR-KIEGMYPNVNRAAQAPPLVAVV----DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGW 326 (390)
Q Consensus 252 ~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~----~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~ 326 (390)
.+..||+.+..-. .+.... . ........ ++.+++.|+.-+.|.+||..+.+-.. .+..... .
T Consensus 164 ~v~iwd~~~~~~~~~~~~~~------~-~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~--~~~~h~~----~ 230 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLTTGQ------E-RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA--TLEGHMS----N 230 (304)
T ss_dssp EEEEEETTCSSCSEEEECCC------T-TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE--EEECCSS----C
T ss_pred eEEEEECCCCCccceeccCC------c-CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce--eeCCCCC----C
Confidence 4677887654311 010000 0 00111111 45677777778899999998765322 2211111 1
Q ss_pred eeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 327 GLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 327 ~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
-..++. -++.+++.|+.++ .|.+||..+
T Consensus 231 v~~~~~~p~~~~l~s~s~Dg------~i~iWd~~~ 259 (304)
T 2ynn_A 231 VSFAVFHPTLPIIISGSEDG------TLKIWNSST 259 (304)
T ss_dssp EEEEEECSSSSEEEEEETTS------CEEEEETTT
T ss_pred EEEEEECCCCCEEEEEcCCC------eEEEEECCC
Confidence 112222 2556777777664 477898876
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.62 Score=39.88 Aligned_cols=185 Identities=11% Similarity=-0.065 Sum_probs=102.5
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.||+... ....++++++....-..+..... ....+++.- ++.||+.-.. ...+.++|+....-+.+.
T Consensus 47 ~~~ly~~d~--~~~~I~~~~~~g~~~~~~~~~~~-~~p~~ia~d~~~~~lyv~d~~------~~~I~~~~~~g~~~~~~~ 117 (267)
T 1npe_A 47 DKVVYWTDI--SEPSIGRASLHGGEPTTIIRQDL-GSPEGIALDHLGRTIFWTDSQ------LDRIEVAKMDGTQRRVLF 117 (267)
T ss_dssp TTEEEEEET--TTTEEEEEESSSCCCEEEECTTC-CCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEE
T ss_pred CCEEEEEEC--CCCEEEEEecCCCCcEEEEECCC-CCccEEEEEecCCeEEEEECC------CCEEEEEEcCCCCEEEEE
Confidence 568888653 34578999987764333221111 122334432 6899998542 356888998754433332
Q ss_pred CCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEec
Q 016421 220 SMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEY 295 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg 295 (390)
.... ......++- +++||+..... ....++++++....-..+..... .....+++- +++||+...
T Consensus 118 ~~~~-~~P~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~dg~~~~~~~~~~~------~~P~gia~d~~~~~lyv~d~ 186 (267)
T 1npe_A 118 DTGL-VNPRGIVTDPVRGNLYWTDWNR----DNPKIETSHMDGTNRRILAQDNL------GLPNGLTFDAFSSQLCWVDA 186 (267)
T ss_dssp CSSC-SSEEEEEEETTTTEEEEEECCS----SSCEEEEEETTSCCCEEEECTTC------SCEEEEEEETTTTEEEEEET
T ss_pred ECCC-CCccEEEEeeCCCEEEEEECCC----CCcEEEEEecCCCCcEEEEECCC------CCCcEEEEcCCCCEEEEEEC
Confidence 1111 111233333 68999974221 13467888876544333321111 011134443 579999998
Q ss_pred CCCeEEEEeCCCCceEEcc-CCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 296 LTNMVKKYDKLKNTWDVLG-RLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 296 ~~~~v~~yd~~~~~W~~v~-~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..+.|.++|+.+..=..+. .+..+ .+++..++.||+..... ..|.++|+++
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~~~P--------~gi~~d~~~lyva~~~~------~~v~~~d~~~ 238 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGLQYP--------FAVTSYGKNLYYTDWKT------NSVIAMDLAI 238 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECCCSE--------EEEEEETTEEEEEETTT------TEEEEEETTT
T ss_pred CCCEEEEEecCCCceEEEecCCCCc--------eEEEEeCCEEEEEECCC------CeEEEEeCCC
Confidence 8899999999764322221 11111 23445689999977533 2588999976
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.52 Score=41.29 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccC
Q 016421 334 GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQ 376 (390)
Q Consensus 334 ~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p 376 (390)
++++++.|+.++ .|.+||.+++ ..|..+..++
T Consensus 317 ~~~~l~s~~~dg------~v~iw~~~~~-----~~~~~~~~~~ 348 (351)
T 3f3f_A 317 TGTILSSAGDDG------KVRLWKATYS-----NEFKCMSVIT 348 (351)
T ss_dssp SSCCEEEEETTS------CEEEEEECTT-----SCEEEEEEEC
T ss_pred CCCEEEEecCCC------cEEEEecCcC-----cchhheeehc
Confidence 567777777664 4889998874 5788887663
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.76 Score=40.88 Aligned_cols=144 Identities=13% Similarity=0.095 Sum_probs=76.0
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcce-eeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLF-GSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.++ .|+ ....+.+||..+++-... +....... +++. -++.+++.|+.++ .+.+||..++.-...
T Consensus 154 ~~~l~-s~s--~d~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sg~~d~------~v~~wd~~~~~~~~~- 221 (340)
T 1got_B 154 DNQIV-TSS--GDTTCALWDIETGQQTTT--FTGHTGDVMSLSLAPDTRLFVSGACDA------SAKLWDVREGMCRQT- 221 (340)
T ss_dssp TTEEE-EEE--TTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCSEEEE-
T ss_pred CCcEE-EEE--CCCcEEEEECCCCcEEEE--EcCCCCceEEEEECCCCCEEEEEeCCC------cEEEEECCCCeeEEE-
Confidence 55543 333 245788999888764322 11111111 2222 2566777777543 478899887754321
Q ss_pred CCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCE-EE-EECCEEEEEec
Q 016421 220 SMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPL-VA-VVDNQLYAVEY 295 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~-~~~g~l~v~gg 295 (390)
+.........+.. ++++++.|+.++ .+..||+.+.+-...-..... ..... ++ ..+|++++.|+
T Consensus 222 -~~~h~~~v~~v~~~p~~~~l~s~s~d~------~v~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~g~~l~~g~ 289 (340)
T 1got_B 222 -FTGHESDINAICFFPNGNAFATGSDDA------TCRLFDLRADQELMTYSHDNI-----ICGITSVSFSKSGRLLLAGY 289 (340)
T ss_dssp -ECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEECCTTC-----CSCEEEEEECTTSSEEEEEE
T ss_pred -EcCCcCCEEEEEEcCCCCEEEEEcCCC------cEEEEECCCCcEEEEEccCCc-----ccceEEEEECCCCCEEEEEC
Confidence 1111111222222 667777776543 467789887653222111110 00111 11 23677888888
Q ss_pred CCCeEEEEeCCCCc
Q 016421 296 LTNMVKKYDKLKNT 309 (390)
Q Consensus 296 ~~~~v~~yd~~~~~ 309 (390)
..+.|.+||..+.+
T Consensus 290 ~d~~i~vwd~~~~~ 303 (340)
T 1got_B 290 DDFNCNVWDALKAD 303 (340)
T ss_dssp TTSEEEEEETTTCC
T ss_pred CCCeEEEEEcccCc
Confidence 88899999987654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.68 Score=40.29 Aligned_cols=200 Identities=9% Similarity=0.044 Sum_probs=93.9
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--C--CEEEEEeccCCCCCccceEEEEECCCCc-EEE
Q 016421 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--G--SIAIIAGGSDKNGHVLKSAELYDSTTGR-WEM 217 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~ 217 (390)
+.+++.|+ .+..+.+||..+++|..+..+.........+.+ + +.+++.|+.+ ..+.+||..++. +..
T Consensus 67 g~~l~s~s--~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 67 GTILASCS--YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKENGTTSP 138 (297)
T ss_dssp CSEEEEEE--TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCSSSCBCC
T ss_pred CCEEEEEc--CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEecCCCceee
Confidence 45555555 346788999988777554332222222222222 1 4566666643 347778876552 211
Q ss_pred cCCCCCCCcCceEEEE---------------CCEEEEEecccCCCccCceEEEEeCCCC--ceEEccCCCCCCCCcCCCC
Q 016421 218 LPSMHSPRRLCSGFFM---------------DGKFYVIGGMSSPTVSLTCGEEFDLETR--KWRKIEGMYPNVNRAAQAP 280 (390)
Q Consensus 218 ~~~~~~~r~~~~~~~~---------------~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~ 280 (390)
. .+.........+.. ++++++.|+.++ .+..||..+. .|.....+.... ...
T Consensus 139 ~-~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~------~v~lwd~~~~~~~~~~~~~l~~H~----~~V 207 (297)
T 2pm7_B 139 I-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEGHS----DWV 207 (297)
T ss_dssp E-EEECCSSCEEEEEECCCC------------CCEEEEEETTS------CEEEEEEETTTTEEEEEEEECCCS----SCE
T ss_pred e-eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCC------cEEEEEEcCCCceEEEEEEecCCC----Cce
Confidence 0 00000001111111 235666666543 3555665543 354433332211 011
Q ss_pred CEEEEE-C---CEEEEEecCCCeEEEEeCCCC--ceEEccCCCccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEE
Q 016421 281 PLVAVV-D---NQLYAVEYLTNMVKKYDKLKN--TWDVLGRLPVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVL 353 (390)
Q Consensus 281 ~~~~~~-~---g~l~v~gg~~~~v~~yd~~~~--~W~~v~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i 353 (390)
..++.. + +.+++.++.-+.|.+||..+. .|....-.... .. ..-.++. .-++++++.||.++ .|
T Consensus 208 ~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~-~~--~~v~~~~~s~~g~~las~~~D~------~v 278 (297)
T 2pm7_B 208 RDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEK-FP--DVLWRASWSLSGNVLALSGGDN------KV 278 (297)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSC-CS--SCEEEEEECSSSCCEEEEETTS------CE
T ss_pred EEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeeccc-CC--CcEEEEEECCCCCEEEEEcCCC------cE
Confidence 112222 2 467777777788999988763 46542110000 00 1111121 23677777777654 37
Q ss_pred eeecCCCCCCCCCCceEEeccc
Q 016421 354 NSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 354 ~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
.+|+...+ ..|..+..+
T Consensus 279 ~lw~~~~~-----g~w~~~~~~ 295 (297)
T 2pm7_B 279 TLWKENLE-----GKWEPAGEV 295 (297)
T ss_dssp EEEEECTT-----SCEEEC---
T ss_pred EEEEECCC-----CcEEecccc
Confidence 78887642 479887765
|
| >3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.85 Score=41.25 Aligned_cols=185 Identities=12% Similarity=0.090 Sum_probs=102.5
Q ss_pred cCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEE-EEECC-----CC-cEEEcCCCCCCCc--CceEEEECCEEEEE
Q 016421 170 CEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAE-LYDST-----TG-RWEMLPSMHSPRR--LCSGFFMDGKFYVI 240 (390)
Q Consensus 170 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~-~yd~~-----t~-~W~~~~~~~~~r~--~~~~~~~~~~iyv~ 240 (390)
++..|..-..|+.+.+++.-|++|-.+++.. ..++- .|-+. .. .=+.++.- ..+. .++.-.++|.+|+.
T Consensus 277 L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~-PRe~G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPCvkyYdgvLyLt 354 (670)
T 3ju4_A 277 LGLIPSVTEVHSFATIDNNGFAMGYHQGDVA-PREVGLFYFPDAFNSPSNYVRRQIPSE-YEPDASEPCIKYYDGVLYLI 354 (670)
T ss_dssp CCSCTTCSEEEEEEECSSSCEEEEEEECSSS-SCEEEEEEETTTTTCTTCCEEEECCGG-GCTTEEEEEEEEETTEEEEE
T ss_pred cccccceeeeeeeeEecCCceEEEeccCCCC-cceeeEEEecccccCCcceeeeechhh-hccccccchhhhhCCEEEEE
Confidence 3444544566788888888888887665543 33333 33221 11 12233221 1111 12233579999999
Q ss_pred ecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec-------------------CCCeEE
Q 016421 241 GGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY-------------------LTNMVK 301 (390)
Q Consensus 241 GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg-------------------~~~~v~ 301 (390)
.-...+...-+.+.+-+..-..|..+..... . .......+.+++.||++|. +....+
T Consensus 355 TRgt~~~~~GS~L~rs~d~Gq~w~slrfp~n-v---HhtnlPFakvgD~l~mFgsERA~nEWE~G~pD~RY~a~yPRtF~ 430 (670)
T 3ju4_A 355 TRGTRGDRLGSSLHRSRDIGQTWESLRFPHN-V---HHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTFY 430 (670)
T ss_dssp EEESCTTSCCCEEEEESSTTSSCEEEECTTC-C---CSSCCCEEEETTEEEEEEECSSTTCSSTTCCCCCSSCBCCEEEE
T ss_pred ecCcCCCCCcceeeeecccCCchhheecccc-c---cccCCCcceeCCEEEEEeccccccccccCCCcccccccCCceEE
Confidence 7544443445667777888889998764322 1 1233447789999999973 111121
Q ss_pred -E-----EeCCCCceEEccC-CCccccCCCcceeEEE-EeCCEE-EEEcCCCC----------------CCCCeEEEeee
Q 016421 302 -K-----YDKLKNTWDVLGR-LPVRADLSNGWGLAFK-ACGNEL-LVVGGQRG----------------PEGENVVLNSW 356 (390)
Q Consensus 302 -~-----yd~~~~~W~~v~~-~~~~~~~~~~~~~~~~-~~~~~l-yv~GG~~~----------------~~~~~~~i~~y 356 (390)
+ |..+.-+|..|.+ +-......+.+|.+.+ +-++.| |+|||.+- ..+...+++||
T Consensus 431 ~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~np~s~gdN~~k~~~~~~Ghp~dlY~~ 510 (670)
T 3ju4_A 431 ARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKSDGHPSDLYCY 510 (670)
T ss_dssp EEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSCCCCTTTTTTTCCTTSTTCCCCEEEEE
T ss_pred EEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccCCccccccccccCccccCCCCcceEEE
Confidence 1 3445557887753 2222222233454444 447776 67887541 12456788888
Q ss_pred cCCC
Q 016421 357 CPKS 360 (390)
Q Consensus 357 ~~~~ 360 (390)
...-
T Consensus 511 ri~i 514 (670)
T 3ju4_A 511 KMKI 514 (670)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.68 Score=42.08 Aligned_cols=147 Identities=9% Similarity=-0.006 Sum_probs=75.4
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCC----Ccce-eeeee-C-CEEEEEeccCCCCCccceEEEEECCCCcE
Q 016421 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHP----RCLF-GSGSL-G-SIAIIAGGSDKNGHVLKSAELYDSTTGRW 215 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~----r~~~-~~~~~-~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (390)
+.+++.|+. ...+.+||..+.+....-..+.. .... .++.. + ..+++.|+.++. ...+.+||..+..-
T Consensus 178 ~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~d~~~~~~ 252 (416)
T 2pm9_A 178 AHVFASAGS--SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIWDLRNANT 252 (416)
T ss_dssp TTEEEEESS--SSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEEETTSTTS
T ss_pred CcEEEEEcC--CCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEEeCCCCCC
Confidence 456666653 45789999988765333222211 1112 22222 2 356666665431 12578899887531
Q ss_pred EEcCCCC-CCCcCceEEEE---CCEEEEEecccCCCccCceEEEEeCCCCceEE-ccCCCCCCCCcCCCCCEEEE-ECC-
Q 016421 216 EMLPSMH-SPRRLCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRK-IEGMYPNVNRAAQAPPLVAV-VDN- 288 (390)
Q Consensus 216 ~~~~~~~-~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~-~~g- 288 (390)
.+..+. ........+.. ++++++.|+.+ ..+..||+.+.+-.. +..... ....++. -++
T Consensus 253 -~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d------g~v~~wd~~~~~~~~~~~~~~~-------~v~~~~~s~~~~ 318 (416)
T 2pm9_A 253 -PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD------NTVLLWNPESAEQLSQFPARGN-------WCFKTKFAPEAP 318 (416)
T ss_dssp -CSBCCCSCCSSCEEEEEECSSCSSCEEEEESS------SEEEEECSSSCCEEEEEECSSS-------CCCCEEECTTCT
T ss_pred -CcEEeecCccCceeEEEeCCCCCCeEEEEeCC------CCEEEeeCCCCccceeecCCCC-------ceEEEEECCCCC
Confidence 111122 11122223333 56777777654 347789988765322 111111 1112333 234
Q ss_pred EEEEEecCCCeEEEEeCCCC
Q 016421 289 QLYAVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 289 ~l~v~gg~~~~v~~yd~~~~ 308 (390)
.+++.++.-+.|.+||..+.
T Consensus 319 ~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 319 DLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp TEEEECCSSSEEEEEESCCC
T ss_pred CEEEEEecCCcEEEEEccCC
Confidence 67777777788999987664
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.26 Score=43.82 Aligned_cols=186 Identities=9% Similarity=0.020 Sum_probs=91.9
Q ss_pred EEEEEcccc-cCCeEEEEECCCCcEeecCCCCCCCcceeeeee-C---CEEEEEeccCCCCCccceEEEEECCCCc--EE
Q 016421 144 ELLVFGREL-FDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-G---SIAIIAGGSDKNGHVLKSAELYDSTTGR--WE 216 (390)
Q Consensus 144 ~iy~~Gg~~-~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~---~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~ 216 (390)
.+++.|+.. ....+.+||..+++............-.+++.. + +.+++.|+.++ .+.+||..++. -.
T Consensus 32 ~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~ 105 (357)
T 3i2n_A 32 KFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG------NLHIWNLEAPEMPVY 105 (357)
T ss_dssp EEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS------CEEEECTTSCSSCSE
T ss_pred eEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC------eEEEEeCCCCCccEE
Confidence 455555421 245788899888776443222111111122222 2 46667776543 47889988765 12
Q ss_pred EcCCCCCCCcCceEE--------EECCEEEEEecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEE--
Q 016421 217 MLPSMHSPRRLCSGF--------FMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVA-- 284 (390)
Q Consensus 217 ~~~~~~~~r~~~~~~--------~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~-- 284 (390)
.+. ........+ .-++...+.|+.++ .+..||+.+.. ...+....... ......++
T Consensus 106 ~~~---~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~~ 173 (357)
T 3i2n_A 106 SVK---GHKEIINAIDGIGGLGIGEGAPEIVTGSRDG------TVKVWDPRQKDDPVANMEPVQGEN---KRDCWTVAFG 173 (357)
T ss_dssp EEC---CCSSCEEEEEEESGGGCC-CCCEEEEEETTS------CEEEECTTSCSSCSEEECCCTTSC---CCCEEEEEEE
T ss_pred EEE---ecccceEEEeeccccccCCCccEEEEEeCCC------eEEEEeCCCCCCcceeccccCCCC---CCceEEEEEE
Confidence 221 111111111 12455666666532 47778888764 33333222110 00111121
Q ss_pred ---EECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe----CCEEEEEcCCCCCCCCeEEEeeec
Q 016421 285 ---VVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC----GNELLVVGGQRGPEGENVVLNSWC 357 (390)
Q Consensus 285 ---~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~----~~~lyv~GG~~~~~~~~~~i~~y~ 357 (390)
..++.+++.|+..+.+..||..+.+-......... -.++... ++..+++|+.++ .|.+||
T Consensus 174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~~~l~~~~~dg------~i~i~d 240 (357)
T 3i2n_A 174 NAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNG-------VCSLEFDRKDISMNKLVATSLEG------KFHVFD 240 (357)
T ss_dssp CCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSC-------EEEEEESCSSSSCCEEEEEESTT------EEEEEE
T ss_pred eccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCc-------eEEEEcCCCCCCCCEEEEECCCC------eEEEEe
Confidence 14677888888778999999988764332221111 1223232 456666666543 466777
Q ss_pred CCC
Q 016421 358 PKS 360 (390)
Q Consensus 358 ~~~ 360 (390)
..+
T Consensus 241 ~~~ 243 (357)
T 3i2n_A 241 MRT 243 (357)
T ss_dssp EEE
T ss_pred CcC
Confidence 654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.27 Score=42.91 Aligned_cols=195 Identities=10% Similarity=0.079 Sum_probs=91.1
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee----CCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL----GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
++..++.|+. +..+.+||..+.....+..+.........+.+ ++.+++.|+.+ ..+.++|..++.|..
T Consensus 20 ~g~~las~s~--D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D------~~v~iWd~~~~~~~~ 91 (297)
T 2pm7_B 20 YGKRMATCSS--DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVMIWKEENGRWSQ 91 (297)
T ss_dssp TSSEEEEEET--TSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------TEEEEEEBSSSCBCC
T ss_pred CCCEEEEEeC--CCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC------CEEEEEEcCCCceEE
Confidence 4555555553 35678888765433222222211111122222 25666667654 348889998887755
Q ss_pred cCCCCCCCcCceEEEE--C--CEEEEEecccCCCccCceEEEEeCCCCc-eE--EccCCCCCCC---CcCCC----CCEE
Q 016421 218 LPSMHSPRRLCSGFFM--D--GKFYVIGGMSSPTVSLTCGEEFDLETRK-WR--KIEGMYPNVN---RAAQA----PPLV 283 (390)
Q Consensus 218 ~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~--~~~~~~~~~~---~~~~~----~~~~ 283 (390)
+..+.........+.. + +.+.+.|+.+ ..+..||+.+.. +. .+........ ..+.. ....
T Consensus 92 ~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 165 (297)
T 2pm7_B 92 IAVHAVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165 (297)
T ss_dssp CEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--------
T ss_pred EEEeecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCC
Confidence 4322222222223333 2 5566666543 246667776542 21 1110000000 00000 0000
Q ss_pred EEECCEEEEEecCCCeEEEEeCCCCc--eEEccCCCccccCCCcceeEEEEe-C---CEEEEEcCCCCCCCCeEEEeeec
Q 016421 284 AVVDNQLYAVEYLTNMVKKYDKLKNT--WDVLGRLPVRADLSNGWGLAFKAC-G---NELLVVGGQRGPEGENVVLNSWC 357 (390)
Q Consensus 284 ~~~~g~l~v~gg~~~~v~~yd~~~~~--W~~v~~~~~~~~~~~~~~~~~~~~-~---~~lyv~GG~~~~~~~~~~i~~y~ 357 (390)
...++++++.|+.-+.|..||..+.. |..+..+..... .-.++... + +.+++.|+.++ .|.+||
T Consensus 166 ~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~----~V~~v~~sp~~~~~~~las~s~D~------~v~iWd 235 (297)
T 2pm7_B 166 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPTVLLRSYMASVSQDR------TCIIWT 235 (297)
T ss_dssp ----CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCCCSSSEEEEEEETTS------CEEEEE
T ss_pred CCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC----ceEEEEECCCCCCceEEEEEECCC------cEEEEE
Confidence 00124577778777889999876643 655443332111 11222222 2 47777777664 377888
Q ss_pred CCC
Q 016421 358 PKS 360 (390)
Q Consensus 358 ~~~ 360 (390)
.++
T Consensus 236 ~~~ 238 (297)
T 2pm7_B 236 QDN 238 (297)
T ss_dssp ESS
T ss_pred eCC
Confidence 765
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=95.96 E-value=1.3 Score=43.39 Aligned_cols=189 Identities=9% Similarity=-0.125 Sum_probs=96.8
Q ss_pred CeEEEEECCC------CcEeecC-CCCCCCcceeeeeeCCEEEEEeccCCCCC--ccceEEEEECC-CC---cEEEcCCC
Q 016421 155 FAIWKYSLVF------RSWMKCE-GMNHPRCLFGSGSLGSIAIIAGGSDKNGH--VLKSAELYDST-TG---RWEMLPSM 221 (390)
Q Consensus 155 ~~~~~yd~~t------~~W~~~~-~~~~~r~~~~~~~~~~~lyv~GG~~~~~~--~~~~~~~yd~~-t~---~W~~~~~~ 221 (390)
..++++|..+ +..+.+. .-. .........-+++..++...+.... ...+++++|.. ++ ..+.+..-
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAH-RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCS-SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred eEEEEEECCCCccccCCceeEEEecCC-CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 5789999988 6665554 211 1111111122454444433322111 13579999998 57 34433211
Q ss_pred CCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCC---CCEEEEE-CCEEEEEecC
Q 016421 222 HSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQA---PPLVAVV-DNQLYAVEYL 296 (390)
Q Consensus 222 ~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~---~~~~~~~-~g~l~v~gg~ 296 (390)
. .......+. -+|++|+.+..++ ...++.+|+.+.++..+......... +.. ...++.. ++++++.+..
T Consensus 240 ~-~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~-p~w~~~~~~~~~~~~~~~~~~~~~ 313 (662)
T 3azo_A 240 P-EEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAG-PLWTPGMRWFAPLANGLIAVVHGK 313 (662)
T ss_dssp T-TBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSC-CCCSTTCCSEEECTTSCEEEEEBS
T ss_pred C-CceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccccC-ccccccCceEeEeCCCEEEEEEEc
Confidence 1 111112222 2778877765432 34689999989999887653321100 000 1123333 6777777654
Q ss_pred -CCeEEEEeCCCCceEEccCCCccccCCCcceeEE-EEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 297 -TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAF-KACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 297 -~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~-~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
...++.+|..+++...+..-... ...+ ...++.++++.+.. .....++.+|+.+
T Consensus 314 ~~~~l~~~d~~~~~~~~l~~~~~~-------~~~~~s~~~~~~~~~~~~~---~~~~~i~~~d~~~ 369 (662)
T 3azo_A 314 GAAVLGILDPESGELVDAAGPWTE-------WAATLTVSGTRAVGVAASP---RTAYEVVELDTVT 369 (662)
T ss_dssp SSCEEEEEETTTTEEEECCSSCCE-------EEEEEEEETTEEEEEEEET---TEEEEEEEEETTT
T ss_pred CccEEEEEECCCCcEEEecCCCCe-------EEEEEecCCCEEEEEEcCC---CCCCEEEEEECCC
Confidence 33566669888887666432111 1122 34466766665432 1344677788766
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.21 Score=44.79 Aligned_cols=182 Identities=10% Similarity=0.100 Sum_probs=92.4
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCC-CCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN-HPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~-~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
++.+++.|+. +..+.+||..++.|.....+. ........+.+ ++..++.|+.++ .+.++|..++.+..+
T Consensus 27 ~g~~las~~~--D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~------~v~iw~~~~~~~~~~ 98 (345)
T 3fm0_A 27 AGTLLASCGG--DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA------TTCIWKKNQDDFECV 98 (345)
T ss_dssp TSSCEEEEET--TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECCC-EEEE
T ss_pred CCCEEEEEcC--CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC------cEEEEEccCCCeEEE
Confidence 4555555553 356788888887764322211 11111122222 566677777543 367788777766544
Q ss_pred CCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCc-eEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEe
Q 016421 219 PSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRK-WRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVE 294 (390)
Q Consensus 219 ~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~g 294 (390)
..+.........+.. ++++.+.|+.++ .+..||+.+.. +..+..+.... .....++. -++.+++.|
T Consensus 99 ~~~~~h~~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~~p~~~~l~s~ 168 (345)
T 3fm0_A 99 TTLEGHENEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSVLNSHT----QDVKHVVWHPSQELLASA 168 (345)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEEECCCC----SCEEEEEECSSSSCEEEE
T ss_pred EEccCCCCCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEEecCcC----CCeEEEEECCCCCEEEEE
Confidence 333322222223333 567777776543 36678876542 33222221110 00001221 256677777
Q ss_pred cCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCEEEEEcCCCC
Q 016421 295 YLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRG 345 (390)
Q Consensus 295 g~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~ 345 (390)
+.-+.+..||..++.|..+..+..... .-.++.. -+++.++.|+.++
T Consensus 169 s~d~~i~~w~~~~~~~~~~~~~~~h~~----~v~~l~~sp~g~~l~s~s~D~ 216 (345)
T 3fm0_A 169 SYDDTVKLYREEEDDWVCCATLEGHES----TVWSLAFDPSGQRLASCSDDR 216 (345)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSS----CEEEEEECTTSSEEEEEETTS
T ss_pred eCCCcEEEEEecCCCEEEEEEecCCCC----ceEEEEECCCCCEEEEEeCCC
Confidence 777889999999988876544432211 1112222 2566666776553
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=1.4 Score=42.66 Aligned_cols=213 Identities=11% Similarity=0.075 Sum_probs=113.4
Q ss_pred cccEEEEEeC-CCeeEEEec-CCC--ceeeCCCCCCCc----ccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc-
Q 016421 96 VEHWVYLVCD-PRGWEAFDP-MKK--KWMALPKIPCDE----CFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS- 166 (390)
Q Consensus 96 ~~~~l~~~~~-~~~~~~~d~-~~~--~W~~l~~~p~~~----~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~- 166 (390)
.+..+|+... ...++++|+ .+. .|..-...+... +........+..++.||+... ...++.+|..+++
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA---NGHLLALDAKTGKI 137 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---TSEEEEEETTTCCE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC---CCEEEEEECCCCCE
Confidence 4678888876 678999999 654 587643322110 000111223456888888653 3578999998875
Q ss_pred -EeecCCC-CCC-CcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCC------C-----------
Q 016421 167 -WMKCEGM-NHP-RCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHS------P----------- 224 (390)
Q Consensus 167 -W~~~~~~-~~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~------~----------- 224 (390)
|+.-..- +.. ......++.++.+|+..+.... .....+..||..+++ |+.-...+. +
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAEL-GVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGG-TCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EEEecCCCCCccceeccCCEEECCEEEEEecCCcc-CCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence 7643211 100 1111233468888876432110 013568999999886 865321110 0
Q ss_pred -----------C---cC---ceEEEE---CCEEEEEeccc---------CCCccCceEEEEeCCCCc--eEEccCCCCCC
Q 016421 225 -----------R---RL---CSGFFM---DGKFYVIGGMS---------SPTVSLTCGEEFDLETRK--WRKIEGMYPNV 273 (390)
Q Consensus 225 -----------r---~~---~~~~~~---~~~iyv~GG~~---------~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~ 273 (390)
. .. .....+ .+.||+-.|.. +...+...++.+|+.+++ |+.-.......
T Consensus 217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~ 296 (571)
T 2ad6_A 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW 296 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence 0 00 011223 47888865532 112224579999998874 76432111000
Q ss_pred CCcCCCCCEEEE--ECC---EEEEEecCCCeEEEEeCCCCc--eEE
Q 016421 274 NRAAQAPPLVAV--VDN---QLYAVEYLTNMVKKYDKLKNT--WDV 312 (390)
Q Consensus 274 ~~~~~~~~~~~~--~~g---~l~v~gg~~~~v~~yd~~~~~--W~~ 312 (390)
.......+.++. .+| ++++++...+.++++|.++.+ |..
T Consensus 297 d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 297 DFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp CCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 000011223332 367 466667667789999988874 654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.87 E-value=1.6 Score=43.22 Aligned_cols=116 Identities=14% Similarity=0.069 Sum_probs=69.9
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCc--EeecCCCCCC--------CcceeeeeeCCEEEEEeccCCCCCccceEEEE
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHP--------RCLFGSGSLGSIAIIAGGSDKNGHVLKSAELY 208 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~y 208 (390)
+..++.||+... ...++.+|..|++ |+.-...+.. ....+.++.+++||+... ...+..+
T Consensus 63 ~v~~g~vyv~~~---~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~al 132 (668)
T 1kv9_A 63 LFHDGVIYTSMS---WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DGRLIAL 132 (668)
T ss_dssp EEETTEEEEEEG---GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TSEEEEE
T ss_pred EEECCEEEEECC---CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------CCEEEEE
Confidence 567899998764 3478889988775 8764332211 011234556888887532 2458999
Q ss_pred ECCCCc--EEEcCCCCC--CCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc--eEE
Q 016421 209 DSTTGR--WEMLPSMHS--PRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRK 265 (390)
Q Consensus 209 d~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~ 265 (390)
|..|++ |+.-..-+. .....+-++.++.||+..+.... .....++.||..+++ |+.
T Consensus 133 D~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 133 DAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY-GVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp ETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEE
T ss_pred ECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCc-CCCCEEEEEECCCCcEEEEe
Confidence 999886 876432111 11222335678998875332111 124568999998875 875
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.89 Score=40.29 Aligned_cols=194 Identities=9% Similarity=0.007 Sum_probs=93.2
Q ss_pred cEEEEEeCCCeeEEEecCCCce-eeCCCCCCCcccCCCCeeEEEeC----CEEEEEcccccCCeEEEEECCCCcEee-cC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKW-MALPKIPCDECFNHADKESLAVG----SELLVFGRELFDFAIWKYSLVFRSWMK-CE 171 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W-~~l~~~p~~~~~~~~~~~~~~~~----~~iy~~Gg~~~~~~~~~yd~~t~~W~~-~~ 171 (390)
..++..++...+..||..+.+. ..+.....+..........+..+ +.+++.|+. ...+.+||..+.+-.. +.
T Consensus 35 ~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~ 112 (366)
T 3k26_A 35 PLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS--RGIIRIINPITMQCIKHYV 112 (366)
T ss_dssp CEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET--TCEEEEECTTTCCEEEEEE
T ss_pred ceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC--CCEEEEEEchhceEeeeec
Confidence 4455555556788888875433 22221111000000101122233 456666653 4578899988765422 21
Q ss_pred CCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEc-CCCCCCCcCceEEEE--CCEEEEEecccCC
Q 016421 172 GMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML-PSMHSPRRLCSGFFM--DGKFYVIGGMSSP 246 (390)
Q Consensus 172 ~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~~~--~~~iyv~GG~~~~ 246 (390)
.. ...-.++... ++.+++.|+.++ .+.+||..+++-... ..+.........+.. ++..++.|+.++
T Consensus 113 ~~--~~~i~~~~~~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg- 183 (366)
T 3k26_A 113 GH--GNAINELKFHPRDPNLLLSVSKDH------ALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH- 183 (366)
T ss_dssp SC--CSCEEEEEECSSCTTEEEEEETTS------CEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTS-
T ss_pred CC--CCcEEEEEECCCCCCEEEEEeCCC------eEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCC-
Confidence 11 1111122222 566777776543 488999988765432 222222222233332 456666666532
Q ss_pred CccCceEEEEeCCCCceEEc-cC-------------------CCC--CCCCcCCCCCEEEEECCEEEEEecCCCeEEEEe
Q 016421 247 TVSLTCGEEFDLETRKWRKI-EG-------------------MYP--NVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYD 304 (390)
Q Consensus 247 ~~~~~~v~~yd~~~~~W~~~-~~-------------------~~~--~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd 304 (390)
.+..||+.+.+-... .. .+. ....+......+... +.+++.++..+.+.+||
T Consensus 184 -----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd 257 (366)
T 3k26_A 184 -----SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWK 257 (366)
T ss_dssp -----CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEE
T ss_pred -----CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEe
Confidence 467788876532110 00 000 000011122234444 66777777788999999
Q ss_pred CCCC
Q 016421 305 KLKN 308 (390)
Q Consensus 305 ~~~~ 308 (390)
..+.
T Consensus 258 ~~~~ 261 (366)
T 3k26_A 258 PGKM 261 (366)
T ss_dssp ESST
T ss_pred CCCc
Confidence 7664
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.1 Score=46.57 Aligned_cols=193 Identities=12% Similarity=0.157 Sum_probs=92.9
Q ss_pred CCEEEEEcccccCCeEEEEECCC--CcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016421 142 GSELLVFGRELFDFAIWKYSLVF--RSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t--~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
++..++.|+. +..+.+||... ..+..+..+.........+.+ ++.+++.|+.++ .+.++|..++.|+.
T Consensus 118 ~g~~las~s~--D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~------~i~iW~~~~~~~~~ 189 (330)
T 2hes_X 118 DGYYLATCSR--DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD------TVRIWKDYDDDWEC 189 (330)
T ss_dssp TSCEEEEEET--TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS------CEEEEEEETTEEEE
T ss_pred CCCEEEEEeC--CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC------eEEEEECCCCCeeE
Confidence 4555555553 45788888743 233332222222221222222 456667776543 37778877777765
Q ss_pred cCCCCCCCcCceEEEE--C--CEEEEEecccCCCccCceEEEEeCCC------CceEEccCCCCCCCCcCCCCCEEEEEC
Q 016421 218 LPSMHSPRRLCSGFFM--D--GKFYVIGGMSSPTVSLTCGEEFDLET------RKWRKIEGMYPNVNRAAQAPPLVAVVD 287 (390)
Q Consensus 218 ~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~v~~yd~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~ 287 (390)
+..+.........+.. + +...+.|+.++ .+..||+.+ ..|.....++... ......++...
T Consensus 190 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~------~v~iw~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~v~~s~ 260 (330)
T 2hes_X 190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS------TVRVWKYMGDDEDDQQEWVCEAILPDVH---KRQVYNVAWGF 260 (330)
T ss_dssp EEEECCCSSCEEEEEECCSSSSCEEEEEETTS------CEEEEEEEEECTTSCEEEEEEEECCSCC---SSCEEEEEECT
T ss_pred EEEccCCCCcEEEEEecCCCCeeEEEEEeCCC------eEEEEEecCCCccccceeEEeeeccccc---ccceEEEEEcC
Confidence 5433322222222222 2 34445555432 244455432 2454443332200 11111233334
Q ss_pred CEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe----CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 288 NQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC----GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 288 g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~----~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.+++.++.-+.|.+||..+++|..+........ ......+.. ++++++.|+.++ .|.+||.++
T Consensus 261 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~---~~~v~~v~~~~~~~~~~las~s~Dg------~v~~W~~~~ 328 (330)
T 2hes_X 261 NGLIASVGADGVLAVYEEVDGEWKVFAKRALCHG---VYEINVVKWLELNGKTILATGGDDG------IVNFWSLEK 328 (330)
T ss_dssp TSCEEEEETTSCEEEEEEETTEEEEEEEESCTTT---TSCEEEEEEC-----CCEEEEETTS------EEEEEEC--
T ss_pred CCEEEEEeCCCEEEEEEcCCCceEEEeccccccc---cceEEEEEEecCCCceEEEEecCCC------cEEEEEecc
Confidence 4566667777889999999888876543211111 001222222 467788888664 578888764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=95.77 E-value=0.68 Score=40.66 Aligned_cols=148 Identities=13% Similarity=0.117 Sum_probs=72.0
Q ss_pred CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceE
Q 016421 187 SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWR 264 (390)
Q Consensus 187 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 264 (390)
+.+++.|+.+ ..+.+||..++.....-. ........+.+ ++++++.|+.++ .+..||+.+.+-.
T Consensus 185 ~~~~~s~~~d------~~i~i~d~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~s~Dg------~i~iwd~~~~~~~ 250 (340)
T 4aow_A 185 NPIIVSCGWD------KLVKVWNLANCKLKTNHI--GHTGYLNTVTVSPDGSLCASGGKDG------QAMLWDLNEGKHL 250 (340)
T ss_dssp SCEEEEEETT------SCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTC------EEEEEETTTTEEE
T ss_pred CcEEEEEcCC------CEEEEEECCCCceeeEec--CCCCcEEEEEECCCCCEEEEEeCCC------eEEEEEeccCcee
Confidence 3455556543 247889988776543211 11111222222 567777776543 4677888765432
Q ss_pred EccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEE-ccC-CC-ccccCCCcceeEEEE-eCCEEEEE
Q 016421 265 KIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDV-LGR-LP-VRADLSNGWGLAFKA-CGNELLVV 340 (390)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~-v~~-~~-~~~~~~~~~~~~~~~-~~~~lyv~ 340 (390)
. .+.... ....++...+..++.++..+.+.+||..+..-.. +.. .. .....+...-.+++. -+++.++.
T Consensus 251 ~--~~~~~~-----~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 323 (340)
T 4aow_A 251 Y--TLDGGD-----IINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323 (340)
T ss_dssp E--EEECSS-----CEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred e--eecCCc-----eEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence 2 111110 1112333334445555566788899987765322 111 00 000111111122222 25677777
Q ss_pred cCCCCCCCCeEEEeeecCCCC
Q 016421 341 GGQRGPEGENVVLNSWCPKSG 361 (390)
Q Consensus 341 GG~~~~~~~~~~i~~y~~~~~ 361 (390)
|+.++ .|.+||.+++
T Consensus 324 gs~Dg------~v~iW~~~tG 338 (340)
T 4aow_A 324 GYTDN------LVRVWQVTIG 338 (340)
T ss_dssp EETTS------CEEEEEEEC-
T ss_pred EeCCC------EEEEEeCCCc
Confidence 87664 4889998773
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=1.6 Score=42.51 Aligned_cols=213 Identities=13% Similarity=0.043 Sum_probs=112.1
Q ss_pred cccEEEEEeC-CCeeEEEec-CCC--ceeeCCCCCCCcc----cCCCCeeEEE--eCCE----EEEEcccccCCeEEEEE
Q 016421 96 VEHWVYLVCD-PRGWEAFDP-MKK--KWMALPKIPCDEC----FNHADKESLA--VGSE----LLVFGRELFDFAIWKYS 161 (390)
Q Consensus 96 ~~~~l~~~~~-~~~~~~~d~-~~~--~W~~l~~~p~~~~----~~~~~~~~~~--~~~~----iy~~Gg~~~~~~~~~yd 161 (390)
....+|+... ...++++|. .+. .|..-...+.... .......... .++. ||+... ...++.+|
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~---dg~l~AlD 137 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL---DGNVAALN 137 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT---TSEEEEEE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC---CCEEEEEE
Confidence 4678888876 678999999 655 5876443322100 0000112233 4566 877643 35788999
Q ss_pred CCCCc--EeecCCCCCC--CcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCC------C-----
Q 016421 162 LVFRS--WMKCEGMNHP--RCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHS------P----- 224 (390)
Q Consensus 162 ~~t~~--W~~~~~~~~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~------~----- 224 (390)
..|++ |+.-..-+.. ......++.++.||+-.+.... .....+..||..+++ |+.-...+. +
T Consensus 138 a~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~-g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 138 AETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAEL-GVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp TTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGG-TCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CCCCCEEEeecCCCCCccceeecCCEEECCEEEEEeccccc-CCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 98875 7643211100 1111234568888775321110 123568999999886 876322111 0
Q ss_pred -----------------Cc-------CceEEE--ECCEEEEEecccC---------CCccCceEEEEeCCCCc--eEEcc
Q 016421 225 -----------------RR-------LCSGFF--MDGKFYVIGGMSS---------PTVSLTCGEEFDLETRK--WRKIE 267 (390)
Q Consensus 225 -----------------r~-------~~~~~~--~~~~iyv~GG~~~---------~~~~~~~v~~yd~~~~~--W~~~~ 267 (390)
.+ ....+. -++.||+-.|... ...+...++.+|+.|.+ |+.-.
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~ 296 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK 296 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred cccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeec
Confidence 00 001111 3678888655421 12234689999999875 76432
Q ss_pred CCCCCCCCcCCCCCEEEE---ECC---EEEEEecCCCeEEEEeCCCCc--eEE
Q 016421 268 GMYPNVNRAAQAPPLVAV---VDN---QLYAVEYLTNMVKKYDKLKNT--WDV 312 (390)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~---~~g---~l~v~gg~~~~v~~yd~~~~~--W~~ 312 (390)
.............+.++. .+| .+++.+...+.++++|.++.+ |..
T Consensus 297 ~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 297 TPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (599)
T ss_dssp STTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence 211100000111223333 246 566666677788888888774 654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.38 Score=43.15 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=22.0
Q ss_pred CC-EEEEEecCCCeEEEEeCCCCceEEccCC
Q 016421 287 DN-QLYAVEYLTNMVKKYDKLKNTWDVLGRL 316 (390)
Q Consensus 287 ~g-~l~v~gg~~~~v~~yd~~~~~W~~v~~~ 316 (390)
+| .+|+.+...+.+.+||..+++...+..+
T Consensus 221 dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~ 251 (361)
T 3scy_A 221 DGKFAYLINEIGGTVIAFRYADGMLDEIQTV 251 (361)
T ss_dssp TSSEEEEEETTTCEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEcCCCCeEEEEEecCCceEEeEEE
Confidence 45 5777776678899999988877665543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.68 E-value=1.2 Score=40.61 Aligned_cols=219 Identities=11% Similarity=0.035 Sum_probs=121.1
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE---eCCEEEEEcccccCCeEEEEECCCCcEeecCC-
Q 016421 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA---VGSELLVFGRELFDFAIWKYSLVFRSWMKCEG- 172 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~---~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~- 172 (390)
+++|+ +.....+..+|+.......+..-.. ....++ .++.||+.-- ....++++++.......+..
T Consensus 87 ~~~l~-~~~~~~I~~i~~~~~~~~~~~~~~~-------~~~gl~~d~~~~~ly~~D~--~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 87 EPVLL-FANRIDIRQVLPHRSEYTLLLNNLE-------NAIALDFHHRRELVFWSDV--TLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp CCEEE-EECBSCEEEECTTSCCCEEEECSCS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCCEEEEECS
T ss_pred cceeE-eecCccceeeccCCCcEEEEecCCC-------ccEEEEEecCCCeEEEEeC--CCCcEEEEecCCCCcEEEEeC
Confidence 34443 4455678888887765544322111 112333 2578887642 34578999998776554422
Q ss_pred -CCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC--CCCCCCcCceEEEE--CCEEEEEecccCCC
Q 016421 173 -MNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP--SMHSPRRLCSGFFM--DGKFYVIGGMSSPT 247 (390)
Q Consensus 173 -~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~ 247 (390)
+..+ ...++...++.||+.-.. ...++++++....-+.+. .+..| ...++- ++.||+.-..
T Consensus 157 ~~~~p-~glavd~~~g~lY~~d~~------~~~I~~~~~dg~~~~~l~~~~l~~P---~giavdp~~g~ly~td~~---- 222 (386)
T 3v65_B 157 GLESP-GGLAVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWG---- 222 (386)
T ss_dssp SCSCC-CCEEEETTTTEEEEEETT------TTEEEECBTTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEECS----
T ss_pred CCCCc-cEEEEEeCCCeEEEEcCC------CCeEEEEeCCCCceEEeecCCCCCC---cEEEEEcCCCeEEEeccC----
Confidence 2222 112222247899998542 346888888755433321 12222 223333 6899997321
Q ss_pred ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE--ECCEEEEEecCCCeEEEEeCCCCceEEccC--CCccccCC
Q 016421 248 VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV--VDNQLYAVEYLTNMVKKYDKLKNTWDVLGR--LPVRADLS 323 (390)
Q Consensus 248 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~--~~~~~~~~ 323 (390)
....|+++++....-..+..... .....+++ .+++||+.....+.|+++|+....=..+.. ++.+
T Consensus 223 -~~~~I~r~~~dG~~~~~~~~~~~------~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P---- 291 (386)
T 3v65_B 223 -NTPRIEASSMDGSGRRIIADTHL------FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHP---- 291 (386)
T ss_dssp -SSCEEEEEETTSCSCEEEECSSC------SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSE----
T ss_pred -CCCEEEEEeCCCCCcEEEEECCC------CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCc----
Confidence 13568899987654333322111 01113444 378999999888999999987644333322 2111
Q ss_pred CcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 324 NGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 324 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.++++.++.||+..-.. ..|..++..+
T Consensus 292 ----~giav~~~~ly~td~~~------~~V~~~~~~~ 318 (386)
T 3v65_B 292 ----FAITVFEDSLYWTDWHT------KSINSANKFT 318 (386)
T ss_dssp ----EEEEEETTEEEEEETTT------TEEEEEETTT
T ss_pred ----eEEEEECCEEEEeeCCC------CeEEEEECCC
Confidence 34555889999987432 1466777544
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.61 E-value=1.2 Score=40.07 Aligned_cols=229 Identities=10% Similarity=0.012 Sum_probs=103.4
Q ss_pred EEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe---CCEEEEEcccccCCeEEEEECCCCcEeecCCCCC
Q 016421 99 WVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV---GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH 175 (390)
Q Consensus 99 ~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~ 175 (390)
.++..+....+..+|..+.+.......+.... ...+.. ++.+++.|+. ...+.+||..+.+-... +..
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~v~~~d~~~~~~~~~--~~~ 184 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVY-----SHHMSPVSTKHCLVAVGTR--GPKVQLCDLKSGSCSHI--LQG 184 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECSSCEE-----EEEECSSCSSCCEEEEEES--SSSEEEEESSSSCCCEE--ECC
T ss_pred EEEEEeCCCeEEEeeCCCCccceeccCCCcee-----eeEeecCCCCCcEEEEEcC--CCeEEEEeCCCcceeee--ecC
Confidence 34443445677888887765433222221100 001111 2335555542 35788899876643211 111
Q ss_pred CCcce-eeeee-C-CEEEEEeccCCCCCccceEEEEECCCCc--EEEcCC--------C----CCCCcCceEEEE--CCE
Q 016421 176 PRCLF-GSGSL-G-SIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPS--------M----HSPRRLCSGFFM--DGK 236 (390)
Q Consensus 176 ~r~~~-~~~~~-~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~--------~----~~~r~~~~~~~~--~~~ 236 (390)
..... +++.. + ..+++.|+.++ .+.+||..+.. ...+.. . .........+.. +++
T Consensus 185 ~~~~v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (408)
T 4a11_B 185 HRQEILAVSWSPRYDYILATASADS------RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258 (408)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred CCCcEEEEEECCCCCcEEEEEcCCC------cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence 11111 22222 2 33677776543 37888887653 122210 0 111111222233 566
Q ss_pred EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCC
Q 016421 237 FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRL 316 (390)
Q Consensus 237 iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~ 316 (390)
.++.|+.++ .+..||+.+.+-........................+..+++++..+.+.+||..+.+-.. .+
T Consensus 259 ~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~--~~ 330 (408)
T 4a11_B 259 HLLTVGTDN------RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT--ML 330 (408)
T ss_dssp EEEEEETTS------CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE--EE
T ss_pred EEEEecCCC------eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee--ee
Confidence 666666542 4778998876532221111000000001111111223344444455788999987765332 22
Q ss_pred CccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 317 PVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 317 ~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..... .-.++. .-++++++.|+.++ .|.+||+++
T Consensus 331 ~~~~~----~v~~~~~s~~~~~l~s~~~dg------~i~iw~~~~ 365 (408)
T 4a11_B 331 KGHYK----TVDCCVFQSNFQELYSGSRDC------NILAWVPSL 365 (408)
T ss_dssp CCCSS----CEEEEEEETTTTEEEEEETTS------CEEEEEECC
T ss_pred ccCCC----eEEEEEEcCCCCEEEEECCCC------eEEEEeCCC
Confidence 11111 112222 23567777777664 477888876
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=95.60 E-value=1.1 Score=39.35 Aligned_cols=233 Identities=13% Similarity=0.104 Sum_probs=109.9
Q ss_pred cEEEEEeC-CCeeEEEecCCCce-e-eCCCCCCCcccCCCCeeEEEe-CCEEEEEcccc-cCCeEEEEECCCCcEeecCC
Q 016421 98 HWVYLVCD-PRGWEAFDPMKKKW-M-ALPKIPCDECFNHADKESLAV-GSELLVFGREL-FDFAIWKYSLVFRSWMKCEG 172 (390)
Q Consensus 98 ~~l~~~~~-~~~~~~~d~~~~~W-~-~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~-~~~~~~~yd~~t~~W~~~~~ 172 (390)
..+|+... ...++.+|+.+.+. . .+..-..+ .. ...+.. ++.+| .+... ....+.+||..+++....-+
T Consensus 52 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~--~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~ 125 (331)
T 3u4y_A 52 SNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS---MA--DVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIP 125 (331)
T ss_dssp CEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC---CC--CEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCceeEEecccCCCC---cc--ceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEE
Confidence 45666654 56788899887653 2 11111110 00 012223 34556 33221 22289999998887644322
Q ss_pred CCCCCcceeeeee-CC-EEEEEeccCCCCCccceEEEEECCCCc-EEEc--CCCCCCCcCceEEEE-CC-EEEEEecccC
Q 016421 173 MNHPRCLFGSGSL-GS-IAIIAGGSDKNGHVLKSAELYDSTTGR-WEML--PSMHSPRRLCSGFFM-DG-KFYVIGGMSS 245 (390)
Q Consensus 173 ~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~--~~~~~~r~~~~~~~~-~~-~iyv~GG~~~ 245 (390)
. ......++.- ++ .+|+.+.... ..+.+|+...+. -... ..++........+.. +| .+|+.+..
T Consensus 126 ~--~~~~~~~~~spdg~~l~~~~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-- 196 (331)
T 3u4y_A 126 I--PYDAVGIAISPNGNGLILIDRSSA-----NTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI-- 196 (331)
T ss_dssp C--CTTEEEEEECTTSSCEEEEEETTT-----TEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT--
T ss_pred C--CCCccceEECCCCCEEEEEecCCC-----ceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC--
Confidence 1 1112233322 34 5777754321 125666654322 1110 001111111222222 55 47776532
Q ss_pred CCccCceEEEEeCCCCce-EEccCCCCCCCCcCCCCCEEEE-ECCE-EEEEecCCCeEEEEeCCCCceEEccCCCcc--c
Q 016421 246 PTVSLTCGEEFDLETRKW-RKIEGMYPNVNRAAQAPPLVAV-VDNQ-LYAVEYLTNMVKKYDKLKNTWDVLGRLPVR--A 320 (390)
Q Consensus 246 ~~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~~-~~g~-l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~--~ 320 (390)
...+.+||+.+.+. ..+..++... ....++. -+|+ +|+.....+.+.+||+++++...+...+.. .
T Consensus 197 ----~~~v~v~d~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 267 (331)
T 3u4y_A 197 ----GNSIGILETQNPENITLLNAVGTNN-----LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI 267 (331)
T ss_dssp ----TTEEEEEECSSTTSCEEEEEEECSS-----CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC
T ss_pred ----CCeEEEEECCCCcccceeeeccCCC-----CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccccc
Confidence 24588899988775 1122222211 1112332 3455 777766567899999999887555433222 0
Q ss_pred cCCCcce---eEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 321 DLSNGWG---LAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 321 ~~~~~~~---~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
......+ .++..-+..||+.++..+ .|.+||.++
T Consensus 268 ~~~~~~~~~~~~~spdg~~l~v~~~~~~------~v~v~d~~~ 304 (331)
T 3u4y_A 268 DPRPLFGANQMALNKTETKLFISANISR------ELKVFTISG 304 (331)
T ss_dssp CCGGGTTCCCEEECTTSSEEEEEETTTT------EEEEEETTS
T ss_pred CCCCcccccceEECCCCCEEEEecCCCC------cEEEEEecC
Confidence 0000011 122222456777765432 588899876
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.52 E-value=2.2 Score=42.26 Aligned_cols=209 Identities=13% Similarity=0.108 Sum_probs=110.6
Q ss_pred cccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCccc----CCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--E
Q 016421 96 VEHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDECF----NHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--W 167 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~~----~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W 167 (390)
.+..+|+......++++|..+. .|..-...+..... ..........++.||+... ...++.+|..|++ |
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---DGRLIALDAKTGKAIW 141 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT---TSEEEEEETTTCCEEE
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC---CCEEEEEECCCCCEee
Confidence 4678888776678899998755 48764433221100 0011223446788887653 3578999998875 8
Q ss_pred eecCCCCC--CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEc--CCCCCCC----------------
Q 016421 168 MKCEGMNH--PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEML--PSMHSPR---------------- 225 (390)
Q Consensus 168 ~~~~~~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~--~~~~~~r---------------- 225 (390)
+.-..-+. .......++.++.+|+..+.... .....+..||..+++ |+.- +.-|...
T Consensus 142 ~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY-GVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp EEECSCTTSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred eeccCCCCCcceecCCCEEECCEEEEeCCCCCc-CCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 65432111 11112334568888875332111 124579999999886 8763 1111110
Q ss_pred ------cC---ceEEEE---CCEEEEEeccc------------CCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCC
Q 016421 226 ------RL---CSGFFM---DGKFYVIGGMS------------SPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQA 279 (390)
Q Consensus 226 ------~~---~~~~~~---~~~iyv~GG~~------------~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~ 279 (390)
.. .....+ ++.+|+-.+.. +...+...++.+|+.|++ |+.-......... ...
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~-~~~ 299 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDF-TAT 299 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC-CCC
T ss_pred ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccc-cCC
Confidence 00 011233 46777765432 112234579999999875 7643221110000 000
Q ss_pred CCEE---EEECCE---EEEEecCCCeEEEEeCCCCc
Q 016421 280 PPLV---AVVDNQ---LYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 280 ~~~~---~~~~g~---l~v~gg~~~~v~~yd~~~~~ 309 (390)
.+.+ ...+|+ +++++...+.++++|..+++
T Consensus 300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 1111 124665 55556666778888877765
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.91 Score=40.73 Aligned_cols=226 Identities=14% Similarity=0.127 Sum_probs=106.3
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCC----C
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEG----M 173 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~----~ 173 (390)
..|...+....+..+|..+.+....-..+... .....+..++..++.||. ...+.+|+.....-..... +
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~----v~~~~~sp~g~~lasg~~--d~~i~v~~~~~~~~~~~~~~~~~~ 150 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTW----VMACAYAPSGCAIACGGL--DNKCSVYPLTFDKNENMAAKKKSV 150 (354)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSSC----CCEEEECTTSSEEEEEST--TSEEEEEECCCCTTCCSGGGCEEE
T ss_pred CEEEEEeCCCeEEEEECCCCCcceEEecCCCC----EEEEEECCCCCEEEEeeC--CCCEEEEEEeccccccccccceee
Confidence 34444444566777887655433221111110 111223335566666664 3566777765431100000 0
Q ss_pred CCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE----CCEEEEEecccCCC
Q 016421 174 NHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM----DGKFYVIGGMSSPT 247 (390)
Q Consensus 174 ~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~ 247 (390)
.........+.+ ++..++.|+.+ ..+.++|..+++-... +.........+.+ ++.+++.|+.++
T Consensus 151 ~~h~~~v~~~~~~~~~~~l~t~s~D------~~v~lwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg-- 220 (354)
T 2pbi_B 151 AMHTNYLSACSFTNSDMQILTASGD------GTCALWDVESGQLLQS--FHGHGADVLCLDLAPSETGNTFVSGGCDK-- 220 (354)
T ss_dssp EECSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEE--EECCSSCEEEEEECCCSSCCEEEEEETTS--
T ss_pred eccCCcEEEEEEeCCCCEEEEEeCC------CcEEEEeCCCCeEEEE--EcCCCCCeEEEEEEeCCCCCEEEEEeCCC--
Confidence 000011111111 33344445433 3588899988764332 1111111112222 356777776543
Q ss_pred ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcc
Q 016421 248 VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGW 326 (390)
Q Consensus 248 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~ 326 (390)
.+..||+.+.+....-.... .....++. -++.+++.|+.-+.+..||..++.-..+-...... .
T Consensus 221 ----~v~~wd~~~~~~~~~~~~h~------~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~-----~ 285 (354)
T 2pbi_B 221 ----KAMVWDMRSGQCVQAFETHE------SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESII-----F 285 (354)
T ss_dssp ----CEEEEETTTCCEEEEECCCS------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC-----S
T ss_pred ----eEEEEECCCCcEEEEecCCC------CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcc-----c
Confidence 47789998876543221111 00011222 25677777877788999998876432221111100 1
Q ss_pred eeEEEE--eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 327 GLAFKA--CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 327 ~~~~~~--~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+...+. .++++++.|+.++ .|.+||..+
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~------~i~vwd~~~ 315 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDY------TINVWDVLK 315 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred ceeEEEEeCCCCEEEEEECCC------cEEEEECCC
Confidence 112222 3677777777553 477898866
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.25 Score=43.68 Aligned_cols=194 Identities=11% Similarity=0.115 Sum_probs=92.9
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcce-eeeee---CCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLF-GSGSL---GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~-~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
++..++.|+ .+..+.+||..+++...+..+....... +++.. ++.+++.|+.++ .+.++|..++.|..
T Consensus 24 ~g~~lasgs--~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~------~v~iWd~~~~~~~~ 95 (316)
T 3bg1_A 24 YGTRLATCS--SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR------KVIIWREENGTWEK 95 (316)
T ss_dssp GGCEEEEEE--TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS------CEEEECCSSSCCCE
T ss_pred CCCEEEEEe--CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC------EEEEEECCCCcceE
Confidence 345555554 2457788887766543222222111111 22221 256666676543 48889998887754
Q ss_pred cCCCCCCCcCceEEEE--C--CEEEEEecccCCCccCceEEEEeCCCC-ceEEccCCCCCCCC------cCCCCCE-EE-
Q 016421 218 LPSMHSPRRLCSGFFM--D--GKFYVIGGMSSPTVSLTCGEEFDLETR-KWRKIEGMYPNVNR------AAQAPPL-VA- 284 (390)
Q Consensus 218 ~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~~~~------~~~~~~~-~~- 284 (390)
+..+.........+.. + +.+++.|+.++ .+..||..+. .|.....+...... .+..... ..
T Consensus 96 ~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~------~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 169 (316)
T 3bg1_A 96 SHEHAGHDSSVNSVCWAPHDYGLILACGSSDG------AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID 169 (316)
T ss_dssp EEEECCCSSCCCEEEECCTTTCSCEEEECSSS------CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-----
T ss_pred EEEccCCCCceEEEEECCCCCCcEEEEEcCCC------CEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccc
Confidence 4322222222222322 2 55666666543 3566777665 46543322211000 0000000 00
Q ss_pred E------ECCEEEEEecCCCeEEEEeCCC-CceEEccCCCccccCCCcceeEEEEe--C----CEEEEEcCCCCCCCCeE
Q 016421 285 V------VDNQLYAVEYLTNMVKKYDKLK-NTWDVLGRLPVRADLSNGWGLAFKAC--G----NELLVVGGQRGPEGENV 351 (390)
Q Consensus 285 ~------~~g~l~v~gg~~~~v~~yd~~~-~~W~~v~~~~~~~~~~~~~~~~~~~~--~----~~lyv~GG~~~~~~~~~ 351 (390)
. ..+++++.|+.-+.|..||..+ +.|..+..+..... . ...+.. + +.+++.|+.++
T Consensus 170 ~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~----~-V~~v~~sp~~~~~~~~las~s~D~------ 238 (316)
T 3bg1_A 170 HPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD----W-VRDVAWAPSIGLPTSTIASCSQDG------ 238 (316)
T ss_dssp -CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS----C-EEEEECCCCSSCSCCEEEEEETTC------
T ss_pred cccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC----c-eEEEEecCCCCCCCceEEEEcCCC------
Confidence 0 0135666677777888898864 46877655432211 1 112222 2 25666666553
Q ss_pred EEeeecCCC
Q 016421 352 VLNSWCPKS 360 (390)
Q Consensus 352 ~i~~y~~~~ 360 (390)
.|.+|+.++
T Consensus 239 ~v~iw~~~~ 247 (316)
T 3bg1_A 239 RVFIWTCDD 247 (316)
T ss_dssp EEEEEECSS
T ss_pred eEEEEEccC
Confidence 466777654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=1.7 Score=43.03 Aligned_cols=185 Identities=10% Similarity=-0.086 Sum_probs=92.1
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCC-cEEEcCCCCCCCc---Cc
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTG-RWEMLPSMHSPRR---LC 228 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~r~---~~ 228 (390)
..++++|..+++-..+............+.. +++.++++..+.. .....+.++|..++ ..+.+........ ..
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~ 313 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA-QNECKVNAYDAETGRFVRTLFVETDKHYVEPLH 313 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT-SCEEEEEEEETTTCCEEEEEEEEECSSCCCCCS
T ss_pred eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC-CCeeEEEEEECCCCceeeEEEEccCCCeECccC
Confidence 5789999998876555432111111122222 4543344333322 13467899999998 6655421111110 01
Q ss_pred eEE-EE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--C-CEEEEEecCC----C
Q 016421 229 SGF-FM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--D-NQLYAVEYLT----N 298 (390)
Q Consensus 229 ~~~-~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~-g~l~v~gg~~----~ 298 (390)
..+ .- +|++++.+..++ ...++.+|........+...... ....... + +.||+.+... .
T Consensus 314 ~~~~sp~~dg~~l~~~~~~g----~~~l~~~~~~~~~~~~l~~~~~~-------v~~~~~~spdg~~l~~~~~~~~~~~~ 382 (706)
T 2z3z_A 314 PLTFLPGSNNQFIWQSRRDG----WNHLYLYDTTGRLIRQVTKGEWE-------VTNFAGFDPKGTRLYFESTEASPLER 382 (706)
T ss_dssp CCEECTTCSSEEEEEECTTS----SCEEEEEETTSCEEEECCCSSSC-------EEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred CceeecCCCCEEEEEEccCC----ccEEEEEECCCCEEEecCCCCeE-------EEeeeEEcCCCCEEEEEecCCCCceE
Confidence 122 23 778666554432 35678888777767666432110 0011122 3 3566665433 3
Q ss_pred eEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 299 MVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 299 ~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.++.+|..+.+...+..... .......-+++.+++..... .....+++||.++
T Consensus 383 ~l~~~d~~~~~~~~l~~~~~-------~~~~~~spdg~~l~~~~~~~--~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 383 HFYCIDIKGGKTKDLTPESG-------MHRTQLSPDGSAIIDIFQSP--TVPRKVTVTNIGK 435 (706)
T ss_dssp EEEEEETTCCCCEESCCSSS-------EEEEEECTTSSEEEEEEECS--SCSCEEEEEESSS
T ss_pred EEEEEEcCCCCceeccCCCc-------eEEEEECCCCCEEEEEecCC--CCCcEEEEEECCC
Confidence 78899998887666642110 11111122455444443221 1223577888766
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.48 E-value=1.3 Score=39.47 Aligned_cols=185 Identities=9% Similarity=0.049 Sum_probs=91.3
Q ss_pred EEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCC
Q 016421 100 VYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR 177 (390)
Q Consensus 100 l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r 177 (390)
|...+....+..+|....+|.....+... +...-..+. .++..++.|+. +..+.+||..+..+..+..+....
T Consensus 31 las~~~D~~i~iw~~~~~~~~~~~~~~~~---h~~~v~~~~~sp~g~~l~s~s~--D~~v~iw~~~~~~~~~~~~~~~h~ 105 (345)
T 3fm0_A 31 LASCGGDRRIRIWGTEGDSWICKSVLSEG---HQRTVRKVAWSPCGNYLASASF--DATTCIWKKNQDDFECVTTLEGHE 105 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECSS---CSSCEEEEEECTTSSEEEEEET--TSCEEEEEECCC-EEEEEEECCCS
T ss_pred EEEEcCCCeEEEEEcCCCcceeeeeeccc---cCCcEEEEEECCCCCEEEEEEC--CCcEEEEEccCCCeEEEEEccCCC
Confidence 33334456677788877766432111110 001111222 24555666653 346777887777664443333222
Q ss_pred cceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCc-EEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCce
Q 016421 178 CLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGR-WEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTC 252 (390)
Q Consensus 178 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 252 (390)
.....+.+ ++.+++.|+.++ .+.++|..++. +..+..+.........+.. ++.+++.|+.++ .
T Consensus 106 ~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~------~ 173 (345)
T 3fm0_A 106 NEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD------T 173 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTS------C
T ss_pred CCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC------c
Confidence 22222222 566777776543 37788876543 3322222222112222222 566666666543 4
Q ss_pred EEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeC
Q 016421 253 GEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDK 305 (390)
Q Consensus 253 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~ 305 (390)
+..||..+..|..+..+..... ....++. -+|+.++.|+.-+.|.+||.
T Consensus 174 i~~w~~~~~~~~~~~~~~~h~~----~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 174 VKLYREEEDDWVCCATLEGHES----TVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp EEEEEEETTEEEEEEEECCCSS----CEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEEEEecCCCEEEEEEecCCCC----ceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 6778888888865443332110 0011222 25667777777778888874
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.39 Score=48.42 Aligned_cols=186 Identities=10% Similarity=0.049 Sum_probs=92.1
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeee-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++..++.|+ ....+.+||..+++....-....... .+++ .-++..+++|+.+ ..+.+||..++.....-
T Consensus 24 ~~~~la~~~--~~g~v~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~- 93 (814)
T 3mkq_A 24 TEPWVLTTL--YSGRVEIWNYETQVEVRSIQVTETPV-RAGKFIARKNWIIVGSDD------FRIRVFNYNTGEKVVDF- 93 (814)
T ss_dssp SSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCE-EEEEEEGGGTEEEEEETT------SEEEEEETTTCCEEEEE-
T ss_pred CCCEEEEEe--CCCEEEEEECCCCceEEEEecCCCcE-EEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEE-
Confidence 344444444 24578889988775432211111111 1121 2245566666643 35889999888764321
Q ss_pred CCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecC
Q 016421 221 MHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYL 296 (390)
Q Consensus 221 ~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~ 296 (390)
.........+.. ++...+.|+.+ ..+..||..++ |.....+... ......++.. ++.+++.++.
T Consensus 94 -~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~-~~~~~~~~~~----~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 94 -EAHPDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENN-WALEQTFEGH----EHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp -ECCSSCEEEEEECSSSSEEEEEETT------SEEEEEEGGGT-SEEEEEEECC----SSCEEEEEEETTEEEEEEEEET
T ss_pred -ecCCCCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCC-ceEEEEEcCC----CCcEEEEEEEcCCCCEEEEEeC
Confidence 111111222222 55555555543 35777888765 2221111110 0011123333 4678888888
Q ss_pred CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe---CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 297 TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC---GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 297 ~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.|.+||..+..-........... . ..+... ++.++++|+.++ .|.+||..+
T Consensus 162 dg~v~vwd~~~~~~~~~~~~~~~~~----v-~~~~~~~~~~~~~l~~~~~dg------~i~~~d~~~ 217 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLTTGQERG----V-NYVDYYPLPDKPYMITASDDL------TIKIWDYQT 217 (814)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTC----C-CEEEECCSTTCCEEEEECTTS------EEEEEETTT
T ss_pred CCeEEEEECCCCcceeEEecCCCCC----E-EEEEEEECCCCCEEEEEeCCC------EEEEEECCC
Confidence 8899999987654222111111000 0 112222 677777777653 578888866
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.40 E-value=1.3 Score=39.97 Aligned_cols=153 Identities=7% Similarity=-0.008 Sum_probs=74.7
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.+++.|+. ...+.+||..+.+-...-..+........... ++.+++.|+.++ .+.+||..++.-...
T Consensus 111 ~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~d~~~~~~~~~- 181 (408)
T 4a11_B 111 DTGMFTSSSF--DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP------KVQLCDLKSGSCSHI- 181 (408)
T ss_dssp CTTCEEEEET--TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS------SEEEEESSSSCCCEE-
T ss_pred CCcEEEEEeC--CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCC------eEEEEeCCCcceeee-
Confidence 3445555542 45788999888765443322222221111111 344666666543 488899887643221
Q ss_pred CCCCCCcCceEEEE--CCE-EEEEecccCCCccCceEEEEeCCCCc--eEEccCCCC--------CCCCcCCCCCEEEE-
Q 016421 220 SMHSPRRLCSGFFM--DGK-FYVIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYP--------NVNRAAQAPPLVAV- 285 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~--------~~~~~~~~~~~~~~- 285 (390)
+.........+.. ++. +++.|+.++ .+..||+.+.. ...+..... ....+......++.
T Consensus 182 -~~~~~~~v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 182 -LQGHRQEILAVSWSPRYDYILATASADS------RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp -ECCCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred -ecCCCCcEEEEEECCCCCcEEEEEcCCC------cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 1111112222222 333 666666543 36778887653 222211000 00000101111222
Q ss_pred ECCEEEEEecCCCeEEEEeCCCCce
Q 016421 286 VDNQLYAVEYLTNMVKKYDKLKNTW 310 (390)
Q Consensus 286 ~~g~l~v~gg~~~~v~~yd~~~~~W 310 (390)
-+++.++.++..+.+.+||..+.+-
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCB
T ss_pred CCCCEEEEecCCCeEEEEECCCCcc
Confidence 2566777777778899999987653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=95.40 E-value=1.3 Score=39.09 Aligned_cols=216 Identities=11% Similarity=0.031 Sum_probs=116.3
Q ss_pred EEeCCCeeEEEecCCCceeeC-CCCCCCcccCCCCeeEEEe---CCEEEEEcccccCCeEEEEECCC----CcEeec-C-
Q 016421 102 LVCDPRGWEAFDPMKKKWMAL-PKIPCDECFNHADKESLAV---GSELLVFGRELFDFAIWKYSLVF----RSWMKC-E- 171 (390)
Q Consensus 102 ~~~~~~~~~~~d~~~~~W~~l-~~~p~~~~~~~~~~~~~~~---~~~iy~~Gg~~~~~~~~~yd~~t----~~W~~~-~- 171 (390)
++.....+..+|+.......+ +.+.. ...+.. ++.||+... ....++++++.. .....+ +
T Consensus 5 l~~~~~~I~~i~~~~~~~~~~~~~~~~--------p~g~~~d~~~~~ly~~D~--~~~~I~~~~~~g~~~~~~~~~~~~~ 74 (316)
T 1ijq_A 5 FFTNRHEVRKMTLDRSEYTSLIPNLRN--------VVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISR 74 (316)
T ss_dssp EEECBSSEEEEETTSCCCEEEECSCSS--------EEEEEEETTTTEEEEEET--TTTEEEEEEC--------CEEEECS
T ss_pred EEECCCeEEEEECCCcceEehhcCCCc--------eEEEEEEeCCCEEEEEEC--CCCcEEEEECCCCCCCcccEEEEeC
Confidence 334456778889887765543 22211 122332 578888753 245788998876 222222 1
Q ss_pred CCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC--CCCCCCcCceEEE--ECCEEEEEecccC
Q 016421 172 GMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP--SMHSPRRLCSGFF--MDGKFYVIGGMSS 245 (390)
Q Consensus 172 ~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~ 245 (390)
.+..+ .++++ .++.||+.-.. ...+.++|+....-+.+. .+..| ...++ .++.||+....
T Consensus 75 ~~~~p---~glavd~~~~~ly~~d~~------~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~-- 140 (316)
T 1ijq_A 75 DIQAP---DGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG-- 140 (316)
T ss_dssp SCSCC---CEEEEETTTTEEEEEETT------TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECS--
T ss_pred CCCCc---CEEEEeecCCeEEEEECC------CCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccC--
Confidence 12222 23443 47899998432 356889998765433322 22222 23333 26899997421
Q ss_pred CCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCC
Q 016421 246 PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLS 323 (390)
Q Consensus 246 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~ 323 (390)
....|+++++....-..+..... .....+++- +++||+.....+.|+++|++...=+.+........
T Consensus 141 ---~~~~I~~~~~dG~~~~~~~~~~~------~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~-- 209 (316)
T 1ijq_A 141 ---TPAKIKKGGLNGVDIYSLVTENI------QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA-- 209 (316)
T ss_dssp ---SSCEEEEEETTSCCEEEEECSSC------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTS--
T ss_pred ---CCCeEEEEcCCCCCeEEEEECCC------CCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccC--
Confidence 12468889886544333322111 011134544 68999999888999999997654344332111111
Q ss_pred CcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 324 NGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 324 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.-.+++..+++||+.-... ..|.++++.+
T Consensus 210 --~P~giav~~~~ly~~d~~~------~~V~~~~~~~ 238 (316)
T 1ijq_A 210 --HPFSLAVFEDKVFWTDIIN------EAIFSANRLT 238 (316)
T ss_dssp --SEEEEEEETTEEEEEETTT------TEEEEEETTT
T ss_pred --CcEEEEEECCEEEEEECCC------CeEEEEeCCC
Confidence 0134555789999987432 1466666654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=1.3 Score=39.12 Aligned_cols=221 Identities=7% Similarity=-0.060 Sum_probs=110.6
Q ss_pred eeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--CCEEEEEcccccCCeEEEEECCCC--cEeecCCC------CCCC
Q 016421 108 GWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--GSELLVFGRELFDFAIWKYSLVFR--SWMKCEGM------NHPR 177 (390)
Q Consensus 108 ~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~iy~~Gg~~~~~~~~~yd~~t~--~W~~~~~~------~~~r 177 (390)
.+..+|+.+.+......... + .....+++ ++.+|+... ....+.+||+... .-..+... ....
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~---~--~~p~gia~d~~g~l~v~d~--~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~ 142 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNL---F--YLPHGLSIDTDGNYWVTDV--ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHF 142 (329)
T ss_dssp CEEEECTTTCCEEEEECTTT---C--SSEEEEEECTTSCEEEEET--TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCC
T ss_pred cEEEEECCCCeEEeccCCCc---c--CCceEEEECCCCCEEEEEC--CCCEEEEEeCCCCeEEEEEecccCCCCCCcccc
Confidence 47778887665432111000 0 01122333 567888654 2457899998654 22222210 1111
Q ss_pred -cceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC-------CCCCcCceEEEE--C-CEEEEEeccc
Q 016421 178 -CLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM-------HSPRRLCSGFFM--D-GKFYVIGGMS 244 (390)
Q Consensus 178 -~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-------~~~r~~~~~~~~--~-~~iyv~GG~~ 244 (390)
...++++- ++.+|+..++. ...+.+||+....-..+... +........+.+ + +.||+....
T Consensus 143 ~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~- 216 (329)
T 3fvz_A 143 CQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE- 216 (329)
T ss_dssp SSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-
T ss_pred CCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-
Confidence 12234443 68999997531 24588999654433333211 111122333433 4 899998532
Q ss_pred CCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec-------CCCeEEEEeCCCCceEEc-cCC
Q 016421 245 SPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY-------LTNMVKKYDKLKNTWDVL-GRL 316 (390)
Q Consensus 245 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg-------~~~~v~~yd~~~~~W~~v-~~~ 316 (390)
...|.+||+.+++....-..+... .....++...+.+|...| ....+.+||..+++.... ...
T Consensus 217 -----~~~I~~~~~~~G~~~~~~~~~~~~----~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~ 287 (329)
T 3fvz_A 217 -----NGRIQCFKTDTKEFVREIKHASFG----RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV 287 (329)
T ss_dssp -----TTEEEEEETTTCCEEEEECCTTTT----TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS
T ss_pred -----CCEEEEEECCCCcEEEEEeccccC----CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC
Confidence 346888999877765432222110 000122333355555544 345899999888875553 211
Q ss_pred CccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 317 PVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 317 ~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.... .-.+++. -+|.|||....++ .|.+|+++.
T Consensus 288 ~~~~~----~p~~ia~~~dG~lyvad~~~~------~I~~~~~~~ 322 (329)
T 3fvz_A 288 RKHFD----MPHDIVASEDGTVYIGDAHTN------TVWKFTLTE 322 (329)
T ss_dssp SSCCS----SEEEEEECTTSEEEEEESSSC------CEEEEEEEE
T ss_pred CCccC----CeeEEEECCCCCEEEEECCCC------EEEEEeCCc
Confidence 11111 0122322 3678999886442 477787754
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.25 Score=47.68 Aligned_cols=242 Identities=8% Similarity=-0.059 Sum_probs=114.6
Q ss_pred ccEEEEEeCCCeeEEEec--CCCceeeCCCCCCCcccCCCCeeEEEe----CC-EEEEEcccccCCeEEEEECCCCcEee
Q 016421 97 EHWVYLVCDPRGWEAFDP--MKKKWMALPKIPCDECFNHADKESLAV----GS-ELLVFGRELFDFAIWKYSLVFRSWMK 169 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~--~~~~W~~l~~~p~~~~~~~~~~~~~~~----~~-~iy~~Gg~~~~~~~~~yd~~t~~W~~ 169 (390)
...+|+.+....+..||+ .+.+- +..++..... ....+.. ++ .+|+.+ .....+.++|..+.+-..
T Consensus 190 g~~l~v~~~d~~V~v~D~~~~t~~~--~~~i~~g~~p---~~va~sp~~~~dg~~l~v~~--~~~~~v~v~D~~t~~~~~ 262 (543)
T 1nir_A 190 GRYLLVIGRDARIDMIDLWAKEPTK--VAEIKIGIEA---RSVESSKFKGYEDRYTIAGA--YWPPQFAIMDGETLEPKQ 262 (543)
T ss_dssp SCEEEEEETTSEEEEEETTSSSCEE--EEEEECCSEE---EEEEECCSTTCTTTEEEEEE--EESSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECcCCCCcE--EEEEecCCCc---ceEEeCCCcCCCCCEEEEEE--ccCCeEEEEeccccccce
Confidence 456777766688889998 55432 2222221111 1122333 33 455533 234678899988775422
Q ss_pred -cCCC----------CCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE-ECCE
Q 016421 170 -CEGM----------NHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF-MDGK 236 (390)
Q Consensus 170 -~~~~----------~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~ 236 (390)
++.. +.++.......- +..+|+.... ...++++|..+..-..+..++..+..+..+. -+|+
T Consensus 263 ~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~------~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~ 336 (543)
T 1nir_A 263 IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHR 336 (543)
T ss_dssp EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSC
T ss_pred eecccCcccCccccccCCceEEEEECCCCCEEEEEECC------CCeEEEEEecCCCcceeEEeccCcCccCceECCCCC
Confidence 2211 111222112222 4555555422 3468889987653211111122233333333 2555
Q ss_pred -EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEec-CCCeEEEEeCCCC-----
Q 016421 237 -FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEY-LTNMVKKYDKLKN----- 308 (390)
Q Consensus 237 -iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg-~~~~v~~yd~~~~----- 308 (390)
+|+.+.. .+.+.++|..+++-...-.... ..++..+.....- ++.+|+.+. ..+.|.+||..+.
T Consensus 337 ~l~va~~~------~~~v~v~D~~tg~l~~~i~~g~--~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~ 408 (543)
T 1nir_A 337 YFMTAANN------SNKVAVIDSKDRRLSALVDVGK--TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY 408 (543)
T ss_dssp EEEEEEGG------GTEEEEEETTTTEEEEEEECSS--SBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred EEEEEecC------CCeEEEEECCCCeEEEeeccCC--CCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchh
Confidence 5554322 3457779999987543222111 1011111112112 377888775 3578999998772
Q ss_pred ceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCC
Q 016421 309 TWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSG 361 (390)
Q Consensus 309 ~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~ 361 (390)
.|+.+..++...... ...++..-+..||+-.-..........|.+||.++.
T Consensus 409 ~~~~v~~l~~~g~~~--~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 409 AWKKVAELQGQGGGS--LFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp BTSEEEEEECSCSCC--CCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred cCeEEEEEEcCCCCc--eEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 388877665432110 112211123456654311111011335888998873
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=95.33 E-value=1.3 Score=40.87 Aligned_cols=186 Identities=8% Similarity=-0.053 Sum_probs=97.2
Q ss_pred CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCC-EEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee
Q 016421 107 RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGS-ELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL 185 (390)
Q Consensus 107 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 185 (390)
..++.+|+.+.+...+...+.. .....+..++ .|++.+.......++++|..+++...+..... ......+
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~~~-----~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~---~~~~~~~ 274 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFPRH-----NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS---NNTEPTW 274 (415)
T ss_dssp CEEEEEETTTCCEEEEECCSSC-----EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS---CEEEEEE
T ss_pred cEEEEEECCCCcEEEeecCCCc-----ccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCC---cccceEE
Confidence 4778888887766554332211 0011122244 45544443345679999999988766544321 1112222
Q ss_pred --CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCc
Q 016421 186 --GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 186 --~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
+++.+++++... ....++++|..++.-+.+... .......+. -+|+..++++...+ ...++.+|+.+.+
T Consensus 275 spdg~~l~~~s~~~---g~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~spdG~~l~~~~~~~g---~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 275 FPDSQNLAFTSDQA---GRPQVYKVNINGGAPQRITWE--GSQNQDADVSSDGKFMVMVSSNGG---QQHIAKQDLATGG 346 (415)
T ss_dssp CTTSSEEEEEECTT---SSCEEEEEETTSSCCEECCCS--SSEEEEEEECTTSSEEEEEEECSS---CEEEEEEETTTCC
T ss_pred CCCCCEEEEEECCC---CCcEEEEEECCCCCEEEEecC--CCcccCeEECCCCCEEEEEECcCC---ceEEEEEECCCCC
Confidence 454444433221 134689999988875554321 111112222 25654444443321 3468899999988
Q ss_pred eEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCC---CeEEEEeCCCCceEEccC
Q 016421 263 WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT---NMVKKYDKLKNTWDVLGR 315 (390)
Q Consensus 263 W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~---~~v~~yd~~~~~W~~v~~ 315 (390)
...+..... . ......-+|+.+++++.. ..++.+|..++....+..
T Consensus 347 ~~~l~~~~~-----~--~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 347 VQVLSSTFL-----D--ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp EEECCCSSS-----C--EEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred EEEecCCCC-----c--CCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeC
Confidence 876543221 0 001222356655554332 278999988777666543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.9 Score=41.41 Aligned_cols=150 Identities=17% Similarity=0.193 Sum_probs=74.4
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++..++.|+. +..+.+||..+.+-...-.- ....-.+++.. ++..++.|+.+ ..+.++|..++.....-.
T Consensus 134 dg~~l~s~~~--d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~ 204 (393)
T 1erj_A 134 DGKFLATGAE--DRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSGD------RTVRIWDLRTGQCSLTLS 204 (393)
T ss_dssp TSSEEEEEET--TSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEcC--CCeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEecCC------CcEEEEECCCCeeEEEEE
Confidence 5566666653 45788999887764332111 11111122221 45555566543 358889998876543211
Q ss_pred CCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCC-CCCCcCCCCCEEEE-ECCEEEEEecC
Q 016421 221 MHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYP-NVNRAAQAPPLVAV-VDNQLYAVEYL 296 (390)
Q Consensus 221 ~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~~-~~g~l~v~gg~ 296 (390)
.... ....+.. ++++++.|+.++ .+..||+.+..-...-.... ....+......++. -+|++++.|+.
T Consensus 205 ~~~~--v~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 276 (393)
T 1erj_A 205 IEDG--VTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 276 (393)
T ss_dssp CSSC--EEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred cCCC--cEEEEEECCCCCEEEEEcCCC------cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence 1111 1122222 567777776543 46778988776432211110 00000101111222 25677777877
Q ss_pred CCeEEEEeCCCC
Q 016421 297 TNMVKKYDKLKN 308 (390)
Q Consensus 297 ~~~v~~yd~~~~ 308 (390)
-+.|..||..+.
T Consensus 277 d~~v~~wd~~~~ 288 (393)
T 1erj_A 277 DRSVKLWNLQNA 288 (393)
T ss_dssp TSEEEEEEC---
T ss_pred CCEEEEEECCCC
Confidence 889999998654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.74 Score=42.37 Aligned_cols=228 Identities=11% Similarity=0.070 Sum_probs=104.7
Q ss_pred EEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcc
Q 016421 100 VYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCL 179 (390)
Q Consensus 100 l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~ 179 (390)
++.++....++.+|..+.+...+-.+..+.. ......+..++.+++.|+. +..+.+||..+++-..... .....
T Consensus 118 ~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~--~V~sv~fspdg~~lasgs~--Dg~v~iWd~~~~~~~~~~~--~h~~~ 191 (420)
T 4gga_A 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGE--YISSVAWIKEGNYLAVGTS--SAEVQLWDVQQQKRLRNMT--SHSAR 191 (420)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCSTTC--CEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEEC--CCSSC
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecCCCC--cEEEEEECCCCCEEEEEEC--CCeEEEEEcCCCcEEEEEe--CCCCc
Confidence 4444556788889998877654433322111 0001112235566666653 4578899998876433222 22222
Q ss_pred eeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE--ECCEEEEEecccCCCccCceEEEEe
Q 016421 180 FGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF--MDGKFYVIGGMSSPTVSLTCGEEFD 257 (390)
Q Consensus 180 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd 257 (390)
..+...++.+.+.|+.+ ..+..+|..+...... .+........... -+++..+.|+.++ .+..+|
T Consensus 192 v~~~s~~~~~l~sgs~d------~~i~~~d~~~~~~~~~-~~~~h~~~~~~~~~~~~g~~l~s~~~D~------~v~i~~ 258 (420)
T 4gga_A 192 VGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVA-TLSGHSQEVCGLRWAPDGRHLASGGNDN------LVNVWP 258 (420)
T ss_dssp EEEEEEETTEEEEEETT------SEEEEEETTSSSCEEE-EEECCSSCEEEEEECTTSSEEEEEETTS------CEEEEE
T ss_pred eEEEeeCCCEEEEEeCC------CceeEeeecccceeeE-EecccccceeeeeecCCCCeeeeeeccc------cceEEe
Confidence 33344566777777654 3467777665442211 1111111111121 2455555555432 355566
Q ss_pred CCCCce--EEccCCCCCCCCcCCCCCEEEEE--CCEEEEE-ecC-CCeEEEEeCCCCceEEccCCCccccCCCcceeEEE
Q 016421 258 LETRKW--RKIEGMYPNVNRAAQAPPLVAVV--DNQLYAV-EYL-TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK 331 (390)
Q Consensus 258 ~~~~~W--~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~-gg~-~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~ 331 (390)
..+.+- ..+...... ......++.. ++.+++. +|. -+.|..||..+++-...-...... ......
T Consensus 259 ~~~~~~~~~~~~~~~~~----~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v-----~~~~~~ 329 (420)
T 4gga_A 259 SAPGEGGWVPLQTFTQH----QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV-----CSILWS 329 (420)
T ss_dssp SSCCSSCSCCSEEECCC----SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCE-----EEEEEE
T ss_pred eccccccceeeeeeccc----CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccce-----eeeeec
Confidence 655431 111111110 0000111211 3344444 443 468999999887644322111111 111111
Q ss_pred EeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 332 ACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 332 ~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..++.+++.+|.... .|.+||..+
T Consensus 330 ~~~~~lv~~sg~~d~-----~I~iwd~~~ 353 (420)
T 4gga_A 330 PHYKELISGHGFAQN-----QLVIWKYPT 353 (420)
T ss_dssp TTTTEEEEEECTTTC-----CEEEEETTT
T ss_pred CCCCeEEEEEecCCC-----EEEEEECCC
Confidence 224566666564321 377888765
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0075 Score=58.91 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=29.1
Q ss_pred CCCCCChHHHHHHHhhhcc-ccchhhhHhhcHHHHHH
Q 016421 45 SLLPGLVDDVALNCLAFAC-TSDYASLLFINKRFHKL 80 (390)
Q Consensus 45 ~~~~~LP~dl~~~iL~rlp-~~~l~~~~~V~k~w~~l 80 (390)
..|..||+|++..||.+|| .+.+.+++.|||+|+.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 5688999999999999999 88999999999999988
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.21 E-value=1.5 Score=38.70 Aligned_cols=191 Identities=8% Similarity=-0.018 Sum_probs=89.6
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH 175 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~ 175 (390)
..|+..+....+..+|..+.+-... +.... .....+. .++..++.++. ...+.+||..+.+....-....
T Consensus 45 ~~l~~~~~dg~i~vwd~~~~~~~~~--~~~h~----~~v~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~ 116 (369)
T 3zwl_B 45 DLLFSCSKDSSASVWYSLNGERLGT--LDGHT----GTIWSIDVDCFTKYCVTGSA--DYSIKLWDVSNGQCVATWKSPV 116 (369)
T ss_dssp CEEEEEESSSCEEEEETTTCCEEEE--ECCCS----SCEEEEEECTTSSEEEEEET--TTEEEEEETTTCCEEEEEECSS
T ss_pred CEEEEEeCCCEEEEEeCCCchhhhh--hhhcC----CcEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCcEEEEeecCC
Confidence 3444444456678888776543221 11111 0111222 24555555543 4578999988876533322221
Q ss_pred CCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCc----EEEcCCCCC-----CCc--CceEEEE--CCEEEEEe
Q 016421 176 PRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGR----WEMLPSMHS-----PRR--LCSGFFM--DGKFYVIG 241 (390)
Q Consensus 176 ~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~----W~~~~~~~~-----~r~--~~~~~~~--~~~iyv~G 241 (390)
+. ..+.. -++..++.++.+.. .....+.+||..+.. +......+. ... ....+.. +++.+++|
T Consensus 117 ~v--~~~~~~~~~~~l~~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (369)
T 3zwl_B 117 PV--KRVEFSPCGNYFLAILDNVM-KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG 193 (369)
T ss_dssp CE--EEEEECTTSSEEEEEECCBT-TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE
T ss_pred Ce--EEEEEccCCCEEEEecCCcc-CCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEE
Confidence 11 11221 24455555543311 123457777765442 221111110 000 2222222 55666666
Q ss_pred cccCCCccCceEEEEeCCC-CceE-EccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEE
Q 016421 242 GMSSPTVSLTCGEEFDLET-RKWR-KIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDV 312 (390)
Q Consensus 242 G~~~~~~~~~~v~~yd~~~-~~W~-~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~ 312 (390)
+.+ ..+..||+.+ ..-. .+..... ....++. -++.+++.++..+.+.+||..+.+-..
T Consensus 194 ~~d------g~i~i~d~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 194 HKD------GKISKYDVSNNYEYVDSIDLHEK-------SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp ETT------SEEEEEETTTTTEEEEEEECCSS-------CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred cCC------CEEEEEECCCCcEeEEEEecCCC-------ceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence 543 3578899987 3322 2221111 0011222 266777777777899999998876444
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=95.19 E-value=1 Score=39.61 Aligned_cols=153 Identities=16% Similarity=0.125 Sum_probs=72.0
Q ss_pred cEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeC-CEEEEEcccccCCeEEEEECCCCcEeecCCCCC
Q 016421 98 HWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVG-SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH 175 (390)
Q Consensus 98 ~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~-~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~ 175 (390)
..+|+.+ ....+..+|+.+.+....-..+..... ....+..+ +.+|+.+. ....+++||+.+++....-..+.
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~s~dg~~~~v~~~--~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGP---GTAMMAPDNRTAYVLNN--HYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSS---CEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEESCC
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCC---ceeEECCCCCEEEEEeC--CCCcEEEEeCCCCcEEEEEEccc
Confidence 4455543 567888999988765432222210000 11122233 35777653 34579999998876543222211
Q ss_pred C-----Ccceeeee--eCCEEEEEecc--CCCCC---ccceEEEEECCCCcEEE-cCCCCCCCcCceEEE-ECCEEEEEe
Q 016421 176 P-----RCLFGSGS--LGSIAIIAGGS--DKNGH---VLKSAELYDSTTGRWEM-LPSMHSPRRLCSGFF-MDGKFYVIG 241 (390)
Q Consensus 176 ~-----r~~~~~~~--~~~~lyv~GG~--~~~~~---~~~~~~~yd~~t~~W~~-~~~~~~~r~~~~~~~-~~~~iyv~G 241 (390)
. .....++. -+..+|+.+.. ..... ....+.+||+.+++-.. +.....+....+.+. -+|++|+.+
T Consensus 86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~~ 165 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG 165 (349)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES
T ss_pred ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEEcc
Confidence 0 00112222 13456665421 00000 12578999988743211 111111222222222 366777742
Q ss_pred cccCCCccCceEEEEeCCCCceE
Q 016421 242 GMSSPTVSLTCGEEFDLETRKWR 264 (390)
Q Consensus 242 G~~~~~~~~~~v~~yd~~~~~W~ 264 (390)
+ .+.++|+.+.+-.
T Consensus 166 ~---------~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 166 P---------DIYKMDVKTGKYT 179 (349)
T ss_dssp S---------SEEEECTTTCCEE
T ss_pred C---------cEEEEeCCCCcee
Confidence 1 2777888776644
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.24 Score=44.76 Aligned_cols=185 Identities=10% Similarity=0.009 Sum_probs=85.7
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCC---CCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN---HPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~---~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
++.++..+. ...+.+||..+++-....... ....-.+++. -+++.++.|+.++ .+.+||..+++-..
T Consensus 105 d~~~l~~s~---dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg------~v~iwd~~~~~~~~ 175 (357)
T 4g56_B 105 EKGILVASD---SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF------SVKVWDLSQKAVLK 175 (357)
T ss_dssp TTEEEEEET---TSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS------CEEEEETTTTEEEE
T ss_pred CCCEEEEEC---CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC------eEEEEECCCCcEEE
Confidence 566554433 357888888776532221110 0111112222 2566677776543 37889998876433
Q ss_pred cCCCCCCCcCceEEEE--CC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE---CCEEE
Q 016421 218 LPSMHSPRRLCSGFFM--DG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV---DNQLY 291 (390)
Q Consensus 218 ~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~---~g~l~ 291 (390)
. +.........+.. ++ .+++.++.++ .+..||+.+.+-......... ......+.. ++.++
T Consensus 176 ~--~~~h~~~v~~v~~s~~~~~~~~s~~~dg------~v~~wd~~~~~~~~~~~~~~~-----~~~v~~v~~sp~~~~~l 242 (357)
T 4g56_B 176 S--YNAHSSEVNCVAACPGKDTIFLSCGEDG------RILLWDTRKPKPATRIDFCAS-----DTIPTSVTWHPEKDDTF 242 (357)
T ss_dssp E--ECCCSSCEEEEEECTTCSSCEEEEETTS------CEEECCTTSSSCBCBCCCTTC-----CSCEEEEEECTTSTTEE
T ss_pred E--EcCCCCCEEEEEEccCCCceeeeeccCC------ceEEEECCCCceeeeeeeccc-----cccccchhhhhcccceE
Confidence 2 1111112222222 33 4666666543 367788877653322111110 011112222 45677
Q ss_pred EEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe--CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 292 AVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC--GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 292 v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.|+..+.|.+||..+.+=.. .+.... ..-.+++.. ++++++.|+.++ .|.+||.++
T Consensus 243 a~g~~d~~i~~wd~~~~~~~~--~~~~~~----~~v~~l~~sp~~~~~lasgs~D~------~i~iwd~~~ 301 (357)
T 4g56_B 243 ACGDETGNVSLVNIKNPDSAQ--TSAVHS----QNITGLAYSYHSSPFLASISEDC------TVAVLDADF 301 (357)
T ss_dssp EEEESSSCEEEEESSCGGGCE--EECCCS----SCEEEEEECSSSSCCEEEEETTS------CEEEECTTS
T ss_pred EEeecccceeEEECCCCcEeE--EEeccc----eeEEEEEEcCCCCCEEEEEeCCC------EEEEEECCC
Confidence 888777889999987754211 111111 111222221 346666676553 377888876
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.8 Score=40.61 Aligned_cols=64 Identities=8% Similarity=-0.062 Sum_probs=36.1
Q ss_pred CEEEEEecCCCeEEEEeCCCCceE--EccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016421 288 NQLYAVEYLTNMVKKYDKLKNTWD--VLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 288 g~l~v~gg~~~~v~~yd~~~~~W~--~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
+++++.|+..+.|.+||..+.+-. .+..+...... ..-..+.. -++++++.|+.++ .|.+||+.
T Consensus 299 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~ 365 (366)
T 3k26_A 299 QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCG--AAIRQTSFSRDSSILIAVCDDA------SIWRWDRL 365 (366)
T ss_dssp SSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCC--SCEEEEEECTTSSEEEEEETTS------EEEEEEC-
T ss_pred CcEEEEEecCCcEEEEECCCCCCccccceEEcccccC--CceEEEEeCCCCCeEEEEeCCC------EEEEEEec
Confidence 778888888889999999876421 11122211000 01122222 2667777777664 58888875
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.14 E-value=1.8 Score=39.14 Aligned_cols=182 Identities=10% Similarity=-0.000 Sum_probs=88.4
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++.+++.|+. ...+.+||........+..... .-.+++.. ++..++.++.+ ..+.+||..++.....-.
T Consensus 119 ~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~ 188 (425)
T 1r5m_A 119 DGNSIVTGVE--NGELRLWNKTGALLNVLNFHRA--PIVSVKWNKDGTHIISMDVE------NVTILWNVISGTVMQHFE 188 (425)
T ss_dssp TSSEEEEEET--TSCEEEEETTSCEEEEECCCCS--CEEEEEECTTSSEEEEEETT------CCEEEEETTTTEEEEEEC
T ss_pred CCCEEEEEeC--CCeEEEEeCCCCeeeeccCCCc--cEEEEEECCCCCEEEEEecC------CeEEEEECCCCcEEEEee
Confidence 4556666653 3568888844433333322111 11122221 45555566543 347889988776543211
Q ss_pred CCCCC--------------cCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCceEE-ccCCCCCCCCcCCCCCEEE
Q 016421 221 MHSPR--------------RLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRK-IEGMYPNVNRAAQAPPLVA 284 (390)
Q Consensus 221 ~~~~r--------------~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~ 284 (390)
.+... ....... -++. +++|+.+ ..+..||+.+.+-.. +..... ....++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------g~i~~~d~~~~~~~~~~~~~~~-------~i~~~~ 254 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPK------GAIFVYQITEKTPTGKLIGHHG-------PISVLE 254 (425)
T ss_dssp CC---------------CCCBSCCEEEETTE-EEEECGG------GCEEEEETTCSSCSEEECCCSS-------CEEEEE
T ss_pred ccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCC------CeEEEEEcCCCceeeeeccCCC-------ceEEEE
Confidence 11111 0122223 3444 5555543 347789988764221 111110 111222
Q ss_pred E-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 285 V-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 285 ~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
. .++++++.++..+.+.+||..+.+-...- .... ..-..+... ++ +++.|+.++ .|.+||..+
T Consensus 255 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~----~~i~~~~~~~~~-~l~~~~~d~------~i~i~d~~~ 319 (425)
T 1r5m_A 255 FNDTNKLLLSASDDGTLRIWHGGNGNSQNCF--YGHS----QSIVSASWVGDD-KVISCSMDG------SVRLWSLKQ 319 (425)
T ss_dssp EETTTTEEEEEETTSCEEEECSSSBSCSEEE--CCCS----SCEEEEEEETTT-EEEEEETTS------EEEEEETTT
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCccceEe--cCCC----ccEEEEEECCCC-EEEEEeCCC------cEEEEECCC
Confidence 2 25667777777788999998775422211 1111 111223333 45 666666553 588899876
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=95.14 E-value=1.2 Score=38.90 Aligned_cols=186 Identities=11% Similarity=0.086 Sum_probs=88.0
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
++.+++.|+ .+..+.+||..+..-...-.............-+++.++.|+.+ ..+.+||..+++-... +
T Consensus 24 ~~~~l~s~~--~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d------~~i~vwd~~~~~~~~~--~ 93 (304)
T 2ynn_A 24 TEPWVLTTL--YSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD------FRIRVFNYNTGEKVVD--F 93 (304)
T ss_dssp SSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT------SEEEEEETTTCCEEEE--E
T ss_pred CCCEEEEEc--CCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCC------CEEEEEECCCCcEEEE--E
Confidence 444455554 24578888988765422111111111111112245566666643 3588899887764221 1
Q ss_pred CCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCC
Q 016421 222 HSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLT 297 (390)
Q Consensus 222 ~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~ 297 (390)
.........+.. ++.+.+.|+.++ .+..||..++. .....+... ......++.. ++.+++.|+.-
T Consensus 94 ~~h~~~v~~~~~~~~~~~l~sgs~D~------~v~lWd~~~~~-~~~~~~~~h----~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 94 EAHPDYIRSIAVHPTKPYVLSGSDDL------TVKLWNWENNW-ALEQTFEGH----EHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTS------CEEEEEGGGTT-EEEEEECCC----CSCEEEEEECTTCTTEEEEEETT
T ss_pred eCCCCcEEEEEEcCCCCEEEEECCCC------eEEEEECCCCc-chhhhhccc----CCcEEEEEECCCCCCEEEEEeCC
Confidence 111111222222 556666666543 46678876542 111111110 1011122222 45677788888
Q ss_pred CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe----CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 298 NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC----GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 298 ~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~----~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.|.+||..+..=... +..... .+...+.. ++.+++.|+.++ .|.+||..+
T Consensus 163 ~~v~iwd~~~~~~~~~--~~~~~~----~~v~~~~~~~~~~~~~l~s~s~D~------~i~iWd~~~ 217 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFT--LTTGQE----RGVNYVDYYPLPDKPYMITASDDL------TIKIWDYQT 217 (304)
T ss_dssp SEEEEEETTCSSCSEE--EECCCT----TCEEEEEECCSTTCCEEEEEETTS------EEEEEETTT
T ss_pred CeEEEEECCCCCccce--eccCCc----CcEEEEEEEEcCCCCEEEEEcCCC------eEEEEeCCC
Confidence 8999999865431110 000000 01112222 455667776553 577888876
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.38 Score=42.63 Aligned_cols=227 Identities=11% Similarity=0.075 Sum_probs=108.5
Q ss_pred cEEEEEeC----CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--C---CEEEEEcccccCCeEEEEECCCCc--
Q 016421 98 HWVYLVCD----PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--G---SELLVFGRELFDFAIWKYSLVFRS-- 166 (390)
Q Consensus 98 ~~l~~~~~----~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~---~~iy~~Gg~~~~~~~~~yd~~t~~-- 166 (390)
..+++.++ ...+..||..+.+.......... ..-..+.. + +.+++.|+. ...+.+||..+.+
T Consensus 31 ~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~ 103 (357)
T 3i2n_A 31 AKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKA-----KPIKCGTFGATSLQQRYLATGDF--GGNLHIWNLEAPEMP 103 (357)
T ss_dssp SEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEES-----SCEEEEECTTCCTTTCCEEEEET--TSCEEEECTTSCSSC
T ss_pred ceEEEecCccCCCcEEEEEeCCCCcccceeeeccc-----CcEEEEEEcCCCCCCceEEEecC--CCeEEEEeCCCCCcc
Confidence 34555442 45678888877665432211110 00112222 2 355555542 3578888887764
Q ss_pred EeecCCCCCCCcceeee-------eeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCCC-CcCceEEE----
Q 016421 167 WMKCEGMNHPRCLFGSG-------SLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHSP-RRLCSGFF---- 232 (390)
Q Consensus 167 W~~~~~~~~~r~~~~~~-------~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~-r~~~~~~~---- 232 (390)
...+....... .++. .-++..++.|+.++ .+.+||..++. ...+...... ......+.
T Consensus 104 ~~~~~~~~~~v--~~~~~~~~~~~s~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (357)
T 3i2n_A 104 VYSVKGHKEII--NAIDGIGGLGIGEGAPEIVTGSRDG------TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA 175 (357)
T ss_dssp SEEECCCSSCE--EEEEEESGGGCC-CCCEEEEEETTS------CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC
T ss_pred EEEEEecccce--EEEeeccccccCCCccEEEEEeCCC------eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec
Confidence 12221111111 1111 12455666666543 48889988765 3333222211 11112222
Q ss_pred --ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE----CCEEEEEecCCCeEEEEeCC
Q 016421 233 --MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV----DNQLYAVEYLTNMVKKYDKL 306 (390)
Q Consensus 233 --~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~----~g~l~v~gg~~~~v~~yd~~ 306 (390)
-++.+++.|+.+ ..+..||+.+.+-........ ....++.. ++..++.|+..+.+..||..
T Consensus 176 ~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 176 YNQEERVVCAGYDN------GDIKLFDLRNMALRWETNIKN-------GVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp CC-CCCEEEEEETT------SEEEEEETTTTEEEEEEECSS-------CEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred cCCCCCEEEEEccC------CeEEEEECccCceeeecCCCC-------ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence 366777766543 357889998876433222111 11123333 56777778778899999876
Q ss_pred CCceEEccCCCc-cccCCCcceeEEEEe-CCE-EEEEcCCCCCCCCeEEEeeecCCC
Q 016421 307 KNTWDVLGRLPV-RADLSNGWGLAFKAC-GNE-LLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 307 ~~~W~~v~~~~~-~~~~~~~~~~~~~~~-~~~-lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.+ .+..++. ....+...-.++... ++. +++.|+.++ .|.+||..+
T Consensus 243 ~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~ 291 (357)
T 3i2n_A 243 TQH--PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG------GLHLWKYEY 291 (357)
T ss_dssp EEE--TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS------EEEEEEEEC
T ss_pred CCC--cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC------cEEEeecCC
Confidence 532 1111110 000000111223233 455 777777664 577888765
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=95.04 E-value=1.5 Score=37.82 Aligned_cols=210 Identities=8% Similarity=-0.106 Sum_probs=105.7
Q ss_pred EEEEEe-CCCeeEEEecCCCc--eeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--EeecCCC
Q 016421 99 WVYLVC-DPRGWEAFDPMKKK--WMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGM 173 (390)
Q Consensus 99 ~l~~~~-~~~~~~~~d~~~~~--W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~ 173 (390)
.+++.+ +...+.++|+++.+ |..-..-.. ......+..++.+++.+ ...+..||+ +++ |+.-.
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~-----~~~~~~~~pdG~ilvs~----~~~V~~~d~-~G~~~W~~~~-- 73 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGW-----ECNSVAATKAGEILFSY----SKGAKMITR-DGRELWNIAA-- 73 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTC-----CCCEEEECTTSCEEEEC----BSEEEEECT-TSCEEEEEEC--
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccC-----CCcCeEECCCCCEEEeC----CCCEEEECC-CCCEEEEEcC--
Confidence 344443 46777889987664 654321100 01122334467777732 357899999 554 65432
Q ss_pred CCCCcceeee-eeCCEEEEEeccCCCCCccceEEEEECCCC-cEEEc-C-CCCCC--CcCceEEEECCEEEEEecccCCC
Q 016421 174 NHPRCLFGSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTG-RWEML-P-SMHSP--RRLCSGFFMDGKFYVIGGMSSPT 247 (390)
Q Consensus 174 ~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~-~-~~~~~--r~~~~~~~~~~~iyv~GG~~~~~ 247 (390)
+.....+++. ..++++++..... ...+..+|+... .|+.- . ..+.+ .........+|.+++....
T Consensus 74 ~~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~---- 144 (276)
T 3no2_A 74 PAGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA---- 144 (276)
T ss_dssp CTTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT----
T ss_pred CCCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC----
Confidence 1111122222 3366666664321 235778887433 24432 1 11111 1111223346777665432
Q ss_pred ccCceEEEEeCCCC-ceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc--eEEcc-CCCccccCC
Q 016421 248 VSLTCGEEFDLETR-KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT--WDVLG-RLPVRADLS 323 (390)
Q Consensus 248 ~~~~~v~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~--W~~v~-~~~~~~~~~ 323 (390)
...+.+||+.-+ .|+.-....+ .......+|.+++.+...+.|..+|+++++ |+.-. .++..+..
T Consensus 145 --~~~v~~~d~~G~~~w~~~~~~~~--------~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~- 213 (276)
T 3no2_A 145 --TSEVREIAPNGQLLNSVKLSGTP--------FSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLF- 213 (276)
T ss_dssp --TTEEEEECTTSCEEEEEECSSCC--------CEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCS-
T ss_pred --CCEEEEECCCCCEEEEEECCCCc--------cceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccc-
Confidence 245888998732 3653322111 012333468888888777789999999664 77632 22211110
Q ss_pred CcceeEEEEeCCEEEEEc
Q 016421 324 NGWGLAFKACGNELLVVG 341 (390)
Q Consensus 324 ~~~~~~~~~~~~~lyv~G 341 (390)
.........+|.+|+..
T Consensus 214 -~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 214 -FVAQLFPLQNGGLYICN 230 (276)
T ss_dssp -EEEEEEECTTSCEEEEE
T ss_pred -ccccceEcCCCCEEEEe
Confidence 11122334588999887
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.03 E-value=1.3 Score=38.41 Aligned_cols=188 Identities=13% Similarity=0.037 Sum_probs=97.5
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016421 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
+.+|+.+.. ...+++||+.++ .+..... .. ...+++. -++++|+.... ...+.+||+.+++.+.+...
T Consensus 40 ~~l~~~~~~--~~~i~~~~~~~~-~~~~~~~-~~-~~~~l~~~~dg~l~v~~~~------~~~i~~~d~~~g~~~~~~~~ 108 (296)
T 3e5z_A 40 SAVIFSDVR--QNRTWAWSDDGQ-LSPEMHP-SH-HQNGHCLNKQGHLIACSHG------LRRLERQREPGGEWESIADS 108 (296)
T ss_dssp TEEEEEEGG--GTEEEEEETTSC-EEEEESS-CS-SEEEEEECTTCCEEEEETT------TTEEEEECSTTCCEEEEECE
T ss_pred CEEEEEeCC--CCEEEEEECCCC-eEEEECC-CC-CcceeeECCCCcEEEEecC------CCeEEEEcCCCCcEEEEeec
Confidence 347776642 357899999987 5554331 11 1123332 26778776431 24589999988887765321
Q ss_pred CCC----CcCceEEEECCEEEEE----ecccC-------CCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-
Q 016421 222 HSP----RRLCSGFFMDGKFYVI----GGMSS-------PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV- 285 (390)
Q Consensus 222 ~~~----r~~~~~~~~~~~iyv~----GG~~~-------~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~- 285 (390)
... +....++.-+|++|+. |.... .......++.||+. ++...+...... ...++.
T Consensus 109 ~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~-------~~gi~~s 180 (296)
T 3e5z_A 109 FEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVK-------PNGLAFL 180 (296)
T ss_dssp ETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSS-------EEEEEEC
T ss_pred cCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCC-------CccEEEC
Confidence 111 1111222237888886 33110 01113478889987 555544321110 012332
Q ss_pred ECCEEEEEecCCCeEEEEeCC-CCce-EEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 286 VDNQLYAVEYLTNMVKKYDKL-KNTW-DVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 286 ~~g~l~v~gg~~~~v~~yd~~-~~~W-~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
-+|++++.+...+.|++||.. +++. .....+....... .+. +..-+|+||+..+ . .|.+||++.
T Consensus 181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p--~~i-~~d~~G~l~v~~~-~-------~v~~~~~~g 246 (296)
T 3e5z_A 181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKT--DGL-RVDAGGLIWASAG-D-------GVHVLTPDG 246 (296)
T ss_dssp TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCC--CSE-EEBTTSCEEEEET-T-------EEEEECTTS
T ss_pred CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCC--CeE-EECCCCCEEEEcC-C-------eEEEECCCC
Confidence 356666666667899999986 4555 2111110010000 112 2234678888772 1 477888865
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.00 E-value=2.1 Score=39.11 Aligned_cols=171 Identities=11% Similarity=0.040 Sum_probs=95.7
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC--CCCCCcCceE
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS--MHSPRRLCSG 230 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~--~~~~r~~~~~ 230 (390)
+.+.++++.......+... .....+++. .++.||+.--. ...+.++++.....+.+.. +..+ .+.
T Consensus 96 ~~I~~i~~~~~~~~~~~~~--~~~~~gl~~d~~~~~ly~~D~~------~~~I~r~~~~g~~~~~~~~~~~~~p---~gl 164 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSDVT------LDRILRANLNGSNVEEVVSTGLESP---GGL 164 (386)
T ss_dssp SCEEEECTTSCCCEEEECS--CSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCCEEEEECSSCSCC---CCE
T ss_pred ccceeeccCCCcEEEEecC--CCccEEEEEecCCCeEEEEeCC------CCcEEEEecCCCCcEEEEeCCCCCc---cEE
Confidence 4677788777665544321 122233333 36899998432 3568999998876655422 2222 223
Q ss_pred EE--ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCC-CeEEEEeC
Q 016421 231 FF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLT-NMVKKYDK 305 (390)
Q Consensus 231 ~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~-~~v~~yd~ 305 (390)
++ .+++||+.-.. ...|+++++....-..+...... ....+++- ++.||+..... ..|+++|+
T Consensus 165 avd~~~g~lY~~d~~------~~~I~~~~~dg~~~~~l~~~~l~------~P~giavdp~~g~ly~td~~~~~~I~r~~~ 232 (386)
T 3v65_B 165 AVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLWQSLE------KPRAIALHPMEGTIYWTDWGNTPRIEASSM 232 (386)
T ss_dssp EEETTTTEEEEEETT------TTEEEECBTTSCSCEEEECSSCS------CEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEEeCCCeEEEEcCC------CCeEEEEeCCCCceEEeecCCCC------CCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence 33 37899997432 34678888775543333221100 11134444 68999998655 89999998
Q ss_pred CCCceEEccC--CCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 306 LKNTWDVLGR--LPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 306 ~~~~W~~v~~--~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
....=..+.. +..+ .|.++-..+++||+.-... ..|+.+|++.
T Consensus 233 dG~~~~~~~~~~~~~P------nGlavd~~~~~lY~aD~~~------~~I~~~d~dG 277 (386)
T 3v65_B 233 DGSGRRIIADTHLFWP------NGLTIDYAGRRMYWVDAKH------HVIERANLDG 277 (386)
T ss_dssp TSCSCEEEECSSCSCE------EEEEEEGGGTEEEEEETTT------TEEEEECTTS
T ss_pred CCCCcEEEEECCCCCe------eeEEEeCCCCEEEEEECCC------CEEEEEeCCC
Confidence 8754444321 2111 1233222478999986533 2577777654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.84 Score=41.13 Aligned_cols=147 Identities=10% Similarity=-0.033 Sum_probs=78.1
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeee-CCE-EEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSI-AIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF 232 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 232 (390)
..++++|..+++...+...+.. .......- ++. |++... .........++++|..++.++.+.. ..+........
T Consensus 168 ~~l~~~d~~~g~~~~~~~~~~~-~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~ 244 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQDTAW-LGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTHEF 244 (396)
T ss_dssp EEEEEEETTTCCEEEEEEESSC-EEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEEEE
T ss_pred ceEEEEECCCCcEEeeccCCcc-cccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-cCCCccccceE
Confidence 4788999988877665432111 11111112 243 444432 2111122578999998888777654 21111111222
Q ss_pred E--CCE-EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEec-------------
Q 016421 233 M--DGK-FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEY------------- 295 (390)
Q Consensus 233 ~--~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg------------- 295 (390)
. +|+ |++.....+ . ....++.+|+.+++...+...+. . . ....- +|+++++.+
T Consensus 245 ~spdg~~l~~~~~~~~-~-~~~~l~~~d~~~g~~~~l~~~~~-----~--~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~ 314 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKG-Q-TDRVIYKANPETLENEEVMVMPP-----C--S-HLMSNFDGSLMVGDGCDAPVDVADADSY 314 (396)
T ss_dssp ECTTSSCEEEEEEETT-T-CCEEEEEECTTTCCEEEEEECCS-----E--E-EEEECSSSSEEEEEECCC----------
T ss_pred ECCCCCEEEEEecCCC-C-ccceEEEEECCCCCeEEeeeCCC-----C--C-CCccCCCCceEEEecCCcceeecccccc
Confidence 2 555 444432221 1 12348899999888776654332 1 1 23334 677666532
Q ss_pred ---CCCeEEEEeCCCCceEEcc
Q 016421 296 ---LTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 296 ---~~~~v~~yd~~~~~W~~v~ 314 (390)
....++.+|+.+++...+.
T Consensus 315 ~~~~~~~i~~~d~~~~~~~~l~ 336 (396)
T 3c5m_A 315 NIENDPFLYVLNTKAKSAQKLC 336 (396)
T ss_dssp CCCCCCEEEEEETTTTBCCEEE
T ss_pred ccCCCCcEEEEecccCceEEcc
Confidence 2367999999888766654
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=94.95 E-value=3.4 Score=41.37 Aligned_cols=189 Identities=9% Similarity=0.002 Sum_probs=96.0
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcc-cCCCCeeEEEe-CCEEEEEcccccCCeEEEEECCC------CcEe-
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDEC-FNHADKESLAV-GSELLVFGRELFDFAIWKYSLVF------RSWM- 168 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~-~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~t------~~W~- 168 (390)
..|++.. ...+..||+.+.++........... ....-..+... ++.|++.. ...-+++||+.+ ..+.
T Consensus 384 g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT---~~~Gl~~~~~~~~~~~~~~~~~~ 459 (758)
T 3ott_A 384 QQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWIST---CLGGIFVVDKHKLMQSTSGQYIA 459 (758)
T ss_dssp SCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEE---SSSCEEEEEHHHHHHCCSSEEEC
T ss_pred CCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEE---CCCceEEEccccccccCCcceec
Confidence 4455544 3478899999888866532111000 00010112222 46677632 112467787653 1221
Q ss_pred --e---cCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCC-CcCceEEEE--CCEEEE
Q 016421 169 --K---CEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSP-RRLCSGFFM--DGKFYV 239 (390)
Q Consensus 169 --~---~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-r~~~~~~~~--~~~iyv 239 (390)
. ...++.. .-.++.. -++.|++++|... -+.+||+.+++++.+..-... .....++.. +|.|++
T Consensus 460 ~~~~~~~~~l~~~-~i~~i~~d~~g~lWi~~~t~~------Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi 532 (758)
T 3ott_A 460 EQNYSVHNGLSGM-FINQIIPDNEGNVWVLLYNNK------GIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV 532 (758)
T ss_dssp SEEECGGGTCSCS-CEEEEEECTTSCEEEEETTCS------SEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE
T ss_pred ccccccccccccc-eeeeEEEcCCCCEEEEccCCC------CcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE
Confidence 1 1112211 1112222 2578888666432 378999999998876321111 111222333 577776
Q ss_pred EecccCCCccCceEEEEeCCCCceEEcc--CCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEc
Q 016421 240 IGGMSSPTVSLTCGEEFDLETRKWRKIE--GMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVL 313 (390)
Q Consensus 240 ~GG~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v 313 (390)
. .. ..+.+||+.++++.... .++.. ...++..-+|.|++-. .+.+.+||+++.+....
T Consensus 533 g-t~-------~Gl~~~~~~~~~~~~~~~~gl~~~------~i~~i~~~~g~lWi~t--~~Gl~~~~~~~~~~~~~ 592 (758)
T 3ott_A 533 G-FH-------GGVMRINPKDESQQSISFGSFSNN------EILSMTCVKNSIWVST--TNGLWIIDRKTMDARQQ 592 (758)
T ss_dssp E-ET-------TEEEEECC--CCCCBCCCCC---C------CEEEEEEETTEEEEEE--SSCEEEEETTTCCEEEC
T ss_pred E-ec-------CceEEEecCCCceEEecccCCCcc------ceEEEEECCCCEEEEC--CCCeEEEcCCCceeEEe
Confidence 4 21 23788999998876553 22211 1113444578888875 35699999999887654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=94.90 E-value=1.5 Score=39.87 Aligned_cols=152 Identities=14% Similarity=0.063 Sum_probs=77.0
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEE-----cCCCCCCCcCceEEEE--CC-EEEEEecccCCCccCceEEEEe
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM-----LPSMHSPRRLCSGFFM--DG-KFYVIGGMSSPTVSLTCGEEFD 257 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-----~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~v~~yd 257 (390)
++.+++.|+.+ ..+.+||..++.... +..+.........+.. ++ .+++.|+.++ .+..||
T Consensus 93 ~~~~l~s~s~d------g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg------~i~iwd 160 (402)
T 2aq5_A 93 NDNVIASGSED------CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN------VILVWD 160 (402)
T ss_dssp CTTEEEEEETT------SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS------CEEEEE
T ss_pred CCCEEEEEeCC------CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC------EEEEEE
Confidence 56677777654 348889988775421 1111111112222222 33 4666666543 477899
Q ss_pred CCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEcc-CCCccccCCCcceeEEEEeCC
Q 016421 258 LETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLG-RLPVRADLSNGWGLAFKACGN 335 (390)
Q Consensus 258 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~-~~~~~~~~~~~~~~~~~~~~~ 335 (390)
+.+.+....-..... ......++. -++.+++.++..+.+.+||+.+.+-...- ....... .......-++
T Consensus 161 ~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 232 (402)
T 2aq5_A 161 VGTGAAVLTLGPDVH----PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR----PVHAVFVSEG 232 (402)
T ss_dssp TTTTEEEEEECTTTC----CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSS----CCEEEECSTT
T ss_pred CCCCCccEEEecCCC----CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCc----ceEEEEcCCC
Confidence 988765432210110 000111222 26777777877889999999887643321 1111110 0112223467
Q ss_pred EEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 336 ELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 336 ~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++++|.... ....|.+||..+
T Consensus 233 ~~l~~g~~~~---~d~~i~iwd~~~ 254 (402)
T 2aq5_A 233 KILTTGFSRM---SERQVALWDTKH 254 (402)
T ss_dssp EEEEEEECTT---CCEEEEEEETTB
T ss_pred cEEEEeccCC---CCceEEEEcCcc
Confidence 7777772111 113588888876
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.77 Score=41.41 Aligned_cols=157 Identities=10% Similarity=-0.040 Sum_probs=76.3
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE-
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF- 232 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~- 232 (390)
..++++|..+++-+.+...+. ........- +++.+++............++.+|..+...+.+............+.
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~~-~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQENQ-WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWV 246 (388)
T ss_dssp EEEEEEETTTCCEEEEEEESS-CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEEC
T ss_pred ceEEEEECCCCceEEeecCCc-cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceEC
Confidence 578999999887665543221 111222222 44443333222211124579999998877766644221111111122
Q ss_pred ECCE-EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCc-CCCCCEEEEECCE-EEEEe--------cCCCeEE
Q 016421 233 MDGK-FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRA-AQAPPLVAVVDNQ-LYAVE--------YLTNMVK 301 (390)
Q Consensus 233 ~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~g~-l~v~g--------g~~~~v~ 301 (390)
-+|+ |+.+....+. ....++.+|+.+++-..+...+...... ..... ...-+|+ |++.. .....|+
T Consensus 247 pdg~~l~~~~~~~~~--~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~-~~spdg~~l~~~~~~~~~~~~~~~~~i~ 323 (388)
T 3pe7_A 247 PDGSALVYVSYLKGS--PDRFIYSADPETLENRQLTSMPACSHLMSNYDGS-LMVGDGSDAPVDVQDDSGYKIENDPFLY 323 (388)
T ss_dssp TTSSCEEEEEEETTC--CCEEEEEECTTTCCEEEEEEECCEEEEEECTTSS-EEEEEECCC------------CCCCEEE
T ss_pred CCCCEEEEEecCCCC--CcceEEEEecCCCceEEEEcCCCceeeeecCCCC-eEccCCCcceeEeeeccccccCCCCEEE
Confidence 2554 5444332221 1235889999998876654433200000 00011 2233333 33221 2346899
Q ss_pred EEeCCCCceEEccC
Q 016421 302 KYDKLKNTWDVLGR 315 (390)
Q Consensus 302 ~yd~~~~~W~~v~~ 315 (390)
.+|.++++-..+..
T Consensus 324 ~~d~~~~~~~~l~~ 337 (388)
T 3pe7_A 324 VFNMKNGTQHRVAR 337 (388)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEeccCCceEEecc
Confidence 99999887766653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=94.84 E-value=1.2 Score=44.40 Aligned_cols=216 Identities=11% Similarity=0.006 Sum_probs=110.6
Q ss_pred CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE-eCCEEEEEcccccCCeEEEEECCCC----cEeec-C-CCCCCC
Q 016421 105 DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA-VGSELLVFGRELFDFAIWKYSLVFR----SWMKC-E-GMNHPR 177 (390)
Q Consensus 105 ~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~-~~~~iy~~Gg~~~~~~~~~yd~~t~----~W~~~-~-~~~~~r 177 (390)
....+..+++.......+......+ . ...+. .++.||+.-. ....++++++.+. .-..+ . .+..+
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~~~p--~---gla~d~~~~~Ly~sD~--~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P- 455 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNLRNV--V---ALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAP- 455 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCCTTC--C---CCEEETTTTEEEECCT--TTTSBEEEESCCCCC-CCCCCBCCSCC--C-
T ss_pred CccceEEEeCCCCcceeeeccCcce--E---EEccccccCeEEEEec--CCCeEEEEecCCCCCCcceEEEEeCCCCCc-
Confidence 3456677787776665443221111 0 01122 2567887532 2346788887651 11111 1 11111
Q ss_pred cceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC--CCCCCcCceEEE--ECCEEEEEecccCCCccCc
Q 016421 178 CLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS--MHSPRRLCSGFF--MDGKFYVIGGMSSPTVSLT 251 (390)
Q Consensus 178 ~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~--~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~ 251 (390)
.++++ .++.||+.-.. ...+.++++....-+.+.. +..|+ ..++ .++.||+.--. ...
T Consensus 456 --~glavD~~~g~LY~tD~~------~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~-----~~~ 519 (699)
T 1n7d_A 456 --DGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG-----TPA 519 (699)
T ss_dssp --CCEECCCSSSBCEECCTT------TSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS-----SSC
T ss_pred --ceEEEEeeCCcEEEEecc------CCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC-----CCC
Confidence 22332 46889987321 3458899987665444322 22222 2332 36788886311 124
Q ss_pred eEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE--ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeE
Q 016421 252 CGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV--VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLA 329 (390)
Q Consensus 252 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~ 329 (390)
.|+++++....-..+..... .....+++ .+++||+.....+.|+++|+....-..+........ ...+
T Consensus 520 ~I~~~~~dG~~~~~l~~~~l------~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~----~P~g 589 (699)
T 1n7d_A 520 KIKKGGLNGVDIYSLVTENI------QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA----HPFS 589 (699)
T ss_dssp CEEBCCSSSCCCCEESCSSC------SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCS----SCCC
T ss_pred eEEEEeCCCCCeeEEEeCCC------CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCC----CceE
Confidence 57777765433322221111 01112444 368999999888999999997654444433211111 1123
Q ss_pred EEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 330 FKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 330 ~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++.+++||+.-...+ .|.++++.+
T Consensus 590 lavd~~~lywtd~~~~------~V~~~d~~~ 614 (699)
T 1n7d_A 590 LAVFEDKVFWTDIINE------AIFSANRLT 614 (699)
T ss_dssp CEEETTEEEEECSTTT------CEEEEETTT
T ss_pred eEEECCEEEEEeCCCC------eEEEEEccC
Confidence 4557889999984332 366777654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.77 E-value=2.6 Score=39.06 Aligned_cols=199 Identities=8% Similarity=-0.040 Sum_probs=94.8
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEee--cCCCCCCCcce-eee-eeC---CEEEEEeccCCCCCccceEEEEECCCCc
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMK--CEGMNHPRCLF-GSG-SLG---SIAIIAGGSDKNGHVLKSAELYDSTTGR 214 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~--~~~~~~~r~~~-~~~-~~~---~~lyv~GG~~~~~~~~~~~~~yd~~t~~ 214 (390)
++..++.|+. ...++.++..+..... ...+....... +++ .-+ +++++.|+.+ ..+.+||..++.
T Consensus 160 ~~~~l~~~~~--~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d------~~i~vwd~~~~~ 231 (450)
T 2vdu_B 160 DDTTVIIADK--FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD------EHIKISHYPQCF 231 (450)
T ss_dssp TSSEEEEEET--TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT------SCEEEEEESCTT
T ss_pred CCCEEEEEeC--CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC------CcEEEEECCCCc
Confidence 4555555542 4568888876654321 11111111111 122 225 7777777754 348889987765
Q ss_pred EEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCC---C---------------C-C
Q 016421 215 WEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYP---N---------------V-N 274 (390)
Q Consensus 215 W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~---~---------------~-~ 274 (390)
....- +.........+.. ++++++.|+.+ ..+..||..+.+....-.... . . .
T Consensus 232 ~~~~~-~~~h~~~v~~~~~sd~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
T 2vdu_B 232 IVDKW-LFGHKHFVSSICCGKDYLLLSAGGD------DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND 304 (450)
T ss_dssp CEEEE-CCCCSSCEEEEEECSTTEEEEEESS------SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------
T ss_pred eeeee-ecCCCCceEEEEECCCCEEEEEeCC------CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccc
Confidence 43210 1111111122222 67777777643 357789998876432211100 0 0 0
Q ss_pred CcCCCCCEEEEE-CCEEEEEec-CCCeEEEEeC--CC-CceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCC-CC-
Q 016421 275 RAAQAPPLVAVV-DNQLYAVEY-LTNMVKKYDK--LK-NTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRG-PE- 347 (390)
Q Consensus 275 ~~~~~~~~~~~~-~g~l~v~gg-~~~~v~~yd~--~~-~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~-~~- 347 (390)
........++.. +++.+++++ ..+.|.+||. .+ +.+..+..++... .-..++...+.+++..+... +.
T Consensus 305 ~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~-----~v~~~~~~~~~~~v~~~~~~~~~~ 379 (450)
T 2vdu_B 305 IIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPY-----NVISLSAHNDEFQVTLDNKESSGV 379 (450)
T ss_dssp CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSS-----CEEEEEEETTEEEEEECCTTCCSS
T ss_pred cceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCC-----ceEEEEecCCcEEEEEecccCCCC
Confidence 000000111221 344444443 6788999998 33 4566655444321 11344455677777665432 21
Q ss_pred -CCeEEEeeecCCC
Q 016421 348 -GENVVLNSWCPKS 360 (390)
Q Consensus 348 -~~~~~i~~y~~~~ 360 (390)
...-.++.++.++
T Consensus 380 ~~~~i~v~~~~~~~ 393 (450)
T 2vdu_B 380 QKNFAKFIEYNLNE 393 (450)
T ss_dssp CCCSEEEEEEETTT
T ss_pred CCcceEEEEEEcCC
Confidence 2333566666665
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=94.75 E-value=2.1 Score=37.90 Aligned_cols=143 Identities=13% Similarity=0.007 Sum_probs=78.4
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeee-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++.+|+.+.. ...+++||+.+++...... +. ...+++ .-++++++... ..+.+||+.+++.+.+..
T Consensus 60 ~~~l~~~d~~--~~~i~~~d~~~~~~~~~~~-~~--~v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 60 SGTAWWFNIL--ERELHELHLASGRKTVHAL-PF--MGSALAKISDSKQLIASD--------DGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp TTEEEEEEGG--GTEEEEEETTTTEEEEEEC-SS--CEEEEEEEETTEEEEEET--------TEEEEEETTTCCEEEEEC
T ss_pred CCEEEEEECC--CCEEEEEECCCCcEEEEEC-CC--cceEEEEeCCCeEEEEEC--------CCEEEEECCCCcEEEEee
Confidence 3677776532 3579999999887654432 21 112222 23678877531 248999999998876643
Q ss_pred CCCC--CcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CC-EEEEEe
Q 016421 221 MHSP--RRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DN-QLYAVE 294 (390)
Q Consensus 221 ~~~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g-~l~v~g 294 (390)
.+.. ......+.+ +|++|+.............+++|| +.+...+..-.. ....++.. +| .+|+.+
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~-------~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS-------IPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES-------SEEEEEECTTSCEEEEEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc-------ccCCeEEcCCCCEEEEEE
Confidence 3221 111222223 678877432111111235688888 466554421100 00123322 44 688887
Q ss_pred cCCCeEEEEeCC
Q 016421 295 YLTNMVKKYDKL 306 (390)
Q Consensus 295 g~~~~v~~yd~~ 306 (390)
...+.|++||..
T Consensus 198 ~~~~~I~~~d~~ 209 (326)
T 2ghs_A 198 TKVNRLMRVPLD 209 (326)
T ss_dssp TTTCEEEEEEBC
T ss_pred CCCCEEEEEEcc
Confidence 667899999975
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.035 Score=50.82 Aligned_cols=180 Identities=18% Similarity=0.141 Sum_probs=76.8
Q ss_pred EeCCEEEEEcccccCCeEEEEECCCCc--EeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCC--cE
Q 016421 140 AVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTG--RW 215 (390)
Q Consensus 140 ~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~W 215 (390)
..++.||+.+. ...++.+|..+++ |+.-. . + .....+..++.+|+.++.+ ..+..+|..++ .|
T Consensus 7 v~~~~v~~gs~---dg~v~a~d~~tG~~~W~~~~--~-~-~~s~p~~~~g~~~v~~s~d------g~l~a~d~~tG~~~w 73 (369)
T 2hz6_A 7 LPETLLFVSTL---DGSLHAVSKRTGSIKWTLKE--D-P-VLQVPTHVEEPAFLPDPND------GSLYTLGSKNNEGLT 73 (369)
T ss_dssp -CTTEEEEEET---TSEEEEEETTTCCEEEEEEC--C-C-SCCCC-----CCEEECTTT------CCEEEC-----CCSE
T ss_pred eeCCEEEEEcC---CCEEEEEECCCCCEEEEecC--C-C-ceecceEcCCCEEEEeCCC------CEEEEEECCCCceee
Confidence 34667776543 3478999988875 75532 1 1 1112233466677776433 34888998766 46
Q ss_pred EEcCCCCCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEEEECCEEEE
Q 016421 216 EMLPSMHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVAVVDNQLYA 292 (390)
Q Consensus 216 ~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v 292 (390)
+.-...+... ..+.+. .++.||+ |+. ...++.+|+.+++ |+.-.... .+ .+..++.+|+
T Consensus 74 ~~~~~~~~~~-~~sp~~~~~~~v~~-g~~------dg~v~a~D~~tG~~~w~~~~~~~------~~----~~p~~~~v~~ 135 (369)
T 2hz6_A 74 KLPFTIPELV-QASPCRSSDGILYM-GKK------QDIWYVIDLLTGEKQQTLSSAFA------DS----LSPSTSLLYL 135 (369)
T ss_dssp ECSCCHHHHH-TTCSCC-----CCC-CEE------EEEEEEECCC--------------------------------EEE
T ss_pred eeeccCcccc-ccCceEecCCEEEE-EeC------CCEEEEEECCCCcEEEEecCCCc------cc----ccccCCEEEE
Confidence 5421111000 111111 4556654 322 2357889988764 65322110 01 1113445554
Q ss_pred EecCCCeEEEEeCCCCc--eEEcc-CCCccccCCCcceeEEE---EeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCC
Q 016421 293 VEYLTNMVKKYDKLKNT--WDVLG-RLPVRADLSNGWGLAFK---ACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGT 366 (390)
Q Consensus 293 ~gg~~~~v~~yd~~~~~--W~~v~-~~~~~~~~~~~~~~~~~---~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~ 366 (390)
+...+.+..||+.+++ |+.-. .... .++. ..++.+|+... ++ .++++|..+ +.
T Consensus 136 -~~~dg~v~a~d~~tG~~~W~~~~~~~~~---------~~~~~~~~~~~~v~~~~~-dg------~v~a~d~~t----G~ 194 (369)
T 2hz6_A 136 -GRTEYTITMYDTKTRELRWNATYFDYAA---------SLPEDDVDYKMSHFVSNG-DG------LVVTVDSES----GD 194 (369)
T ss_dssp -EEEEEEEECCCSSSSSCCCEEEEEEECC---------BCCCCCTTCCCCEEEEET-SC------EEEEECTTT----CC
T ss_pred -EecCCEEEEEECCCCCEEEeEecccccC---------ccccCCccccceEEEECC-CC------EEEEEECCC----Cc
Confidence 4444678999988764 87521 1100 0000 12366666432 21 588999887 45
Q ss_pred CceEE
Q 016421 367 LDWKV 371 (390)
Q Consensus 367 ~~W~~ 371 (390)
..|+.
T Consensus 195 ~~W~~ 199 (369)
T 2hz6_A 195 VLWIQ 199 (369)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 56874
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=94.75 E-value=1.8 Score=38.97 Aligned_cols=198 Identities=9% Similarity=-0.058 Sum_probs=92.7
Q ss_pred CCEEEEEcccccCCeEEEEECCCCc-------EeecCCCCCCCcceeeee-eC----C---EEEEEeccCCCCCccceEE
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRS-------WMKCEGMNHPRCLFGSGS-LG----S---IAIIAGGSDKNGHVLKSAE 206 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~-------W~~~~~~~~~r~~~~~~~-~~----~---~lyv~GG~~~~~~~~~~~~ 206 (390)
...+++.|+. +..+.+||..+.. -..+.....+ -..+.. -+ + .+++.|+.++ .+.
T Consensus 25 ~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~g~~~~~l~s~~~dg------~i~ 94 (397)
T 1sq9_A 25 CNSFTVSCSG--DGYLKVWDNKLLDNENPKDKSYSHFVHKSG--LHHVDVLQAIERDAFELCLVATTSFSG------DLL 94 (397)
T ss_dssp CSSEEEEEET--TSEEEEEESBCCTTCCGGGGEEEEECCTTC--EEEEEEEEEEETTTEEEEEEEEEETTS------CEE
T ss_pred cCCeEEEEcC--CCEEEEEECCCcccccCCCcceEEecCCCc--EEEEEEecccccCCccccEEEEEcCCC------CEE
Confidence 3355555543 4578889988765 2222211111 112222 23 5 7777776543 378
Q ss_pred EEECCCCc------EEEcCCCCCC--CcC-ceEEEE-----CCEE-EEEecccCCCccCceEEEEeCCC------Cc---
Q 016421 207 LYDSTTGR------WEMLPSMHSP--RRL-CSGFFM-----DGKF-YVIGGMSSPTVSLTCGEEFDLET------RK--- 262 (390)
Q Consensus 207 ~yd~~t~~------W~~~~~~~~~--r~~-~~~~~~-----~~~i-yv~GG~~~~~~~~~~v~~yd~~~------~~--- 262 (390)
+||..++. +..+...+.. ... .+++.. ++.. ++.|+.++ .+..||+.+ .+
T Consensus 95 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~ 168 (397)
T 1sq9_A 95 FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG------TTYIWKFHPFADESNSLTLN 168 (397)
T ss_dssp EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS------CEEEEEEESSSSHHHHTTTC
T ss_pred EEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC------cEEEEeCCccccccccceee
Confidence 88887776 6665443211 111 222233 4565 66666542 356677665 21
Q ss_pred eEEccCCCC---CCCCcCCCCCEEEEE-CCEEEEEecCCCeEEEEeCCCCceEEccCC-CccccCCCcceeEEEE-eCCE
Q 016421 263 WRKIEGMYP---NVNRAAQAPPLVAVV-DNQLYAVEYLTNMVKKYDKLKNTWDVLGRL-PVRADLSNGWGLAFKA-CGNE 336 (390)
Q Consensus 263 W~~~~~~~~---~~~~~~~~~~~~~~~-~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~-~~~~~~~~~~~~~~~~-~~~~ 336 (390)
|.....+.. ....+......++.. ++ +++.|+..+.+.+||..+.+-...-.. ...... ...-.++.. -+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~-~~~i~~i~~~~~~~ 246 (397)
T 1sq9_A 169 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN-SNSIRSVKFSPQGS 246 (397)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC-CCCEEEEEECSSTT
T ss_pred ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccccc-CCccceEEECCCCC
Confidence 111001100 000001111233333 46 777787788999999987754332111 000000 001122222 2566
Q ss_pred EEEEcCCCCCCCCeEEEeeecCCC
Q 016421 337 LLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 337 lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++.|+.++ ....|.+||..+
T Consensus 247 ~l~~~~~d~---~~g~i~i~d~~~ 267 (397)
T 1sq9_A 247 LLAIAHDSN---SFGCITLYETEF 267 (397)
T ss_dssp EEEEEEEET---TEEEEEEEETTT
T ss_pred EEEEEecCC---CCceEEEEECCC
Confidence 777776441 113688999876
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=94.73 E-value=2.3 Score=38.28 Aligned_cols=209 Identities=5% Similarity=-0.125 Sum_probs=101.4
Q ss_pred eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 141 VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 141 ~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
.++.+.+++.......+.++|+.+.+-......... -.+++. -++++++.++. ..+.+++..++......
T Consensus 143 pDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~--V~~v~fspdg~~l~s~s~-------~~~~~~~~~~~~~~~~~ 213 (365)
T 4h5i_A 143 REGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGE--VKDLHFSTDGKVVAYITG-------SSLEVISTVTGSCIARK 213 (365)
T ss_dssp TTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSC--CCEEEECTTSSEEEEECS-------SCEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCc--eEEEEEccCCceEEeccc-------eeEEEEEeccCcceeee
Confidence 355555444333456789999988765433221111 112222 25666666542 23677887777654322
Q ss_pred CCCCCCcCceEE--EECCEEEEEecccCCCccCceEEEEeCCCCceEEccC--CCCCCCCcCCCCCEE-EEECCEEEEEe
Q 016421 220 SMHSPRRLCSGF--FMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEG--MYPNVNRAAQAPPLV-AVVDNQLYAVE 294 (390)
Q Consensus 220 ~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~--~~~~~~~~~~~~~~~-~~~~g~l~v~g 294 (390)
...........+ .-+++.++.++.++.. ...+..+|........... +.... ....++ ..-+|++++.|
T Consensus 214 ~~~~~~~~v~~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~----~~V~~~~~Spdg~~lasg 287 (365)
T 4h5i_A 214 TDFDKNWSLSKINFIADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSKQVTNRF----KGITSMDVDMKGELAVLA 287 (365)
T ss_dssp CCCCTTEEEEEEEEEETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEEEEESSC----SCEEEEEECTTSCEEEEE
T ss_pred ecCCCCCCEEEEEEcCCCCEEEEEecCCcc--eeEEeecccccceecceeeeeecCCC----CCeEeEEECCCCCceEEE
Confidence 222222222222 3478888887765432 2345667776665543221 11100 000012 22378888888
Q ss_pred cCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016421 295 YLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 295 g~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
+.-+.|.+||..+.+- +..+... +...-.+++. -++++++.|+.++ .|.+||...+.-..+..|+.+.
T Consensus 288 s~D~~V~iwd~~~~~~--~~~~~~g---H~~~V~~v~fSpdg~~laS~S~D~------tvrvw~ip~~~~~~~s~~~~l~ 356 (365)
T 4h5i_A 288 SNDNSIALVKLKDLSM--SKIFKQA---HSFAITEVTISPDSTYVASVSAAN------TIHIIKLPLNYANYTSMKQKIS 356 (365)
T ss_dssp ETTSCEEEEETTTTEE--EEEETTS---SSSCEEEEEECTTSCEEEEEETTS------EEEEEECCTTTTC---------
T ss_pred cCCCEEEEEECCCCcE--EEEecCc---ccCCEEEEEECCCCCEEEEEeCCC------eEEEEEcCCCCcCccCccccce
Confidence 8888999999987652 2221111 1111122222 2678888887664 5888987553333334566554
Q ss_pred cc
Q 016421 374 EK 375 (390)
Q Consensus 374 ~~ 375 (390)
.+
T Consensus 357 kl 358 (365)
T 4h5i_A 357 KL 358 (365)
T ss_dssp --
T ss_pred ee
Confidence 43
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=94.71 E-value=2 Score=37.56 Aligned_cols=190 Identities=9% Similarity=-0.047 Sum_probs=99.0
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++.||+... ....++++|+....-... ..+ ...++++.. ++++|+...... ...+..||+.+++.+.+..
T Consensus 42 ~g~lyv~d~--~~~~I~~~d~~g~~~~~~-~~~--~~p~gia~~~dG~l~vad~~~~----~~~v~~~d~~~g~~~~~~~ 112 (306)
T 2p4o_A 42 DGTIFVTNH--EVGEIVSITPDGNQQIHA-TVE--GKVSGLAFTSNGDLVATGWNAD----SIPVVSLVKSDGTVETLLT 112 (306)
T ss_dssp TSCEEEEET--TTTEEEEECTTCCEEEEE-ECS--SEEEEEEECTTSCEEEEEECTT----SCEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEeC--CCCeEEEECCCCceEEEE-eCC--CCceeEEEcCCCcEEEEeccCC----cceEEEEcCCCCeEEEEEe
Confidence 566777642 235789999876432221 111 122333332 577888753211 1247889988888776655
Q ss_pred CCCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCc---eEEccCCC--CCCCCcCCCCCEEEEECCEEEEEe
Q 016421 221 MHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRK---WRKIEGMY--PNVNRAAQAPPLVAVVDNQLYAVE 294 (390)
Q Consensus 221 ~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~---W~~~~~~~--~~~~~~~~~~~~~~~~~g~l~v~g 294 (390)
.+..+.....+. .++.+|+.-. ....++++|+.+.. |..-..+. ..... -.....+..-++.||+..
T Consensus 113 ~~~~~~~~g~~~~~~~~~~v~d~------~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~-~~~pngis~dg~~lyv~d 185 (306)
T 2p4o_A 113 LPDAIFLNGITPLSDTQYLTADS------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESV-FPAANGLKRFGNFLYVSN 185 (306)
T ss_dssp CTTCSCEEEEEESSSSEEEEEET------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCC-SCSEEEEEEETTEEEEEE
T ss_pred CCCccccCcccccCCCcEEEEEC------CCCeEEEEeCCCCcEeEEEECCccccccccCC-CCcCCCcCcCCCEEEEEe
Confidence 444333323332 3556777531 13468899987642 22111110 00000 001112433456899998
Q ss_pred cCCCeEEEEeCCC-Cce---EEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 295 YLTNMVKKYDKLK-NTW---DVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 295 g~~~~v~~yd~~~-~~W---~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
...+.|++||... .+. ..+..+..+ -+.+ +.-+|+||+.....+ .|.+||++.
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~~~~~P------~gi~-vd~dG~l~va~~~~~------~V~~~~~~G 242 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFVEQTNI------DDFA-FDVEGNLYGATHIYN------SVVRIAPDR 242 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEEESCCC------SSEE-EBTTCCEEEECBTTC------CEEEECTTC
T ss_pred CCCCEEEEEEeCCCCCCCccEEEeccCCC------CCeE-ECCCCCEEEEeCCCC------eEEEECCCC
Confidence 8888999999875 221 222222111 1122 233678888865321 377888864
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=1.9 Score=37.90 Aligned_cols=233 Identities=10% Similarity=-0.025 Sum_probs=116.6
Q ss_pred EEEEEeCCCeeEEEecCCCceeeCCCCCCC------------c--ccCCCCeeEEEe--CCEEEEEcccccCCeEEEEEC
Q 016421 99 WVYLVCDPRGWEAFDPMKKKWMALPKIPCD------------E--CFNHADKESLAV--GSELLVFGRELFDFAIWKYSL 162 (390)
Q Consensus 99 ~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~------------~--~~~~~~~~~~~~--~~~iy~~Gg~~~~~~~~~yd~ 162 (390)
.+|+-.....++.||+...++..+...... . ........+... ++.||+.... ..+.++|+
T Consensus 32 ~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~---~~i~~~d~ 108 (322)
T 2fp8_A 32 GFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY---YHLSVVGS 108 (322)
T ss_dssp SEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT---TEEEEECT
T ss_pred EEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC---CCEEEEeC
Confidence 366544566788899987666543210000 0 000011122233 5788887432 34788998
Q ss_pred CCCcEeecCCCCCC---Ccceeeeee--CCEEEEEeccCCC-----------CCccceEEEEECCCCcEEEcC-CCCCCC
Q 016421 163 VFRSWMKCEGMNHP---RCLFGSGSL--GSIAIIAGGSDKN-----------GHVLKSAELYDSTTGRWEMLP-SMHSPR 225 (390)
Q Consensus 163 ~t~~W~~~~~~~~~---r~~~~~~~~--~~~lyv~GG~~~~-----------~~~~~~~~~yd~~t~~W~~~~-~~~~~r 225 (390)
.++..+.+...... .....+++- ++.+|+.-..... ......+++||+.++..+.+. .+..+
T Consensus 109 ~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p- 187 (322)
T 2fp8_A 109 EGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVP- 187 (322)
T ss_dssp TCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCC-
T ss_pred CCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccC-
Confidence 87655444321110 111233332 5788887432100 011356899999888765432 11111
Q ss_pred cCceEEEE-CC-EEEEEecccCCCccCceEEEEeCCCC---ceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecC---
Q 016421 226 RLCSGFFM-DG-KFYVIGGMSSPTVSLTCGEEFDLETR---KWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYL--- 296 (390)
Q Consensus 226 ~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~--- 296 (390)
...+.- ++ .||+.-.. ...|.+||+.+. ....+..++. + ..+++ -+|.||+....
T Consensus 188 --~gia~~~dg~~lyv~d~~------~~~I~~~~~~~~~~~~~~~~~~~~g-----P---~gi~~d~~G~l~va~~~~~~ 251 (322)
T 2fp8_A 188 --GGAEVSADSSFVLVAEFL------SHQIVKYWLEGPKKGTAEVLVKIPN-----P---GNIKRNADGHFWVSSSEELD 251 (322)
T ss_dssp --CEEEECTTSSEEEEEEGG------GTEEEEEESSSTTTTCEEEEEECSS-----E---EEEEECTTSCEEEEEEEETT
T ss_pred --cceEECCCCCEEEEEeCC------CCeEEEEECCCCcCCccceEEeCCC-----C---CCeEECCCCCEEEEecCccc
Confidence 222332 34 58886321 356888998753 3433322211 1 01322 35788888643
Q ss_pred -------CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 297 -------TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 297 -------~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.|.+||+....-..+.. +...... ....++..+++|||.+... ..|.+|++..
T Consensus 252 ~~~~~~~~~~v~~~d~~G~~~~~~~~-~~g~~~~--~~~~~~~~~g~L~v~~~~~------~~i~~~~~~~ 313 (322)
T 2fp8_A 252 GNMHGRVDPKGIKFDEFGNILEVIPL-PPPFAGE--HFEQIQEHDGLLYIGTLFH------GSVGILVYDK 313 (322)
T ss_dssp SSTTSCEEEEEEEECTTSCEEEEEEC-CTTTTTS--CCCEEEEETTEEEEECSSC------SEEEEEEC--
T ss_pred ccccCCCccEEEEECCCCCEEEEEEC-CCCCccc--cceEEEEeCCEEEEeecCC------CceEEEeccc
Confidence 4679999997554444432 2211010 1133445689999886533 2477888765
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.96 Score=41.20 Aligned_cols=148 Identities=15% Similarity=0.128 Sum_probs=75.8
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCce
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
+++.++.|+.++ .+.+||..+++-... +.........+.. ++...+.|+.+ ..+..||+.+.+.
T Consensus 134 dg~~l~s~~~d~------~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d------~~v~iwd~~~~~~ 199 (393)
T 1erj_A 134 DGKFLATGAEDR------LIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSGDKLVSGSGD------RTVRIWDLRTGQC 199 (393)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEE
T ss_pred CCCEEEEEcCCC------eEEEEECCCCcEEEE--EccCCCCEEEEEEcCCCCEEEEecCC------CcEEEEECCCCee
Confidence 566677776543 488999988765332 1111111222222 55555555543 3577889988765
Q ss_pred EEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEE-ccCCCccccCCCcceeEEEE-eCCEEEE
Q 016421 264 RKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDV-LGRLPVRADLSNGWGLAFKA-CGNELLV 339 (390)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~-v~~~~~~~~~~~~~~~~~~~-~~~~lyv 339 (390)
...-..... ...++.. ++++++.|+..+.+..||..+..-.. +.........+...-.++.. -+++.++
T Consensus 200 ~~~~~~~~~-------v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 200 SLTLSIEDG-------VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272 (393)
T ss_dssp EEEEECSSC-------EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred EEEEEcCCC-------cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence 432221110 1112222 67888888888899999998876432 21110000111111122222 2566777
Q ss_pred EcCCCCCCCCeEEEeeecCCC
Q 016421 340 VGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 340 ~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.|+.++ .|.+||..+
T Consensus 273 s~s~d~------~v~~wd~~~ 287 (393)
T 1erj_A 273 SGSLDR------SVKLWNLQN 287 (393)
T ss_dssp EEETTS------EEEEEEC--
T ss_pred EEeCCC------EEEEEECCC
Confidence 777653 577888765
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.68 E-value=3.8 Score=40.64 Aligned_cols=209 Identities=12% Similarity=0.100 Sum_probs=110.0
Q ss_pred cccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCccc----CCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--E
Q 016421 96 VEHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDECF----NHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--W 167 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~~----~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W 167 (390)
.+..+|+......++++|..+. .|..-...+..... .......+..++.||+... ...++.+|..|++ |
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---DGRLEAIDAKTGQRAW 145 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---TSEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc---CCEEEEEECCCCCEee
Confidence 4678888766677899998855 58764333211100 0011223456788887653 3578999998875 7
Q ss_pred eecCC-CCC--CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEc--CCCCCCC---------------
Q 016421 168 MKCEG-MNH--PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEML--PSMHSPR--------------- 225 (390)
Q Consensus 168 ~~~~~-~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~--~~~~~~r--------------- 225 (390)
+.-.. -+. .....+.++.++.+|+..+.... .....+..||..|++ |+.- +.-+...
T Consensus 146 ~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 146 SVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEF-GVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EEECCSCTTSCCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred eecCcCCCCCCccccCCcEEECCEEEEEeCCCcc-CCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 65432 111 11122334568888874332111 124579999999986 8753 1111100
Q ss_pred -------c---CceEEEE---CCEEEEEeccc------------CCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCC
Q 016421 226 -------R---LCSGFFM---DGKFYVIGGMS------------SPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQ 278 (390)
Q Consensus 226 -------~---~~~~~~~---~~~iyv~GG~~------------~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~ 278 (390)
. ......+ ++.||+-.+.. +...+...+..+|+.|++ |+.-......... ..
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~-~~ 303 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY-TA 303 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC-CC
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc-cC
Confidence 0 0012233 56777754432 112234579999999875 7643211110000 00
Q ss_pred CCCEEE---EECCE---EEEEecCCCeEEEEeCCCCc
Q 016421 279 APPLVA---VVDNQ---LYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 279 ~~~~~~---~~~g~---l~v~gg~~~~v~~yd~~~~~ 309 (390)
..+.+. ..+|+ +++++...+.++++|..+++
T Consensus 304 ~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 304 TQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 011111 23554 55566666778888877764
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=94.68 E-value=2.6 Score=38.75 Aligned_cols=150 Identities=10% Similarity=0.004 Sum_probs=84.4
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc-EEEcCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR-WEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~ 220 (390)
++.||+... ....+.++|+.++.-..+..... ....+...-++.+|+..... ...++++|+.++. ...+..
T Consensus 141 ~g~lyv~d~--~~~~I~~id~~~g~~~~~~~~~~-~~~ia~~~~g~~l~~~d~~~-----~~~I~~~d~~~~~~~~~~g~ 212 (409)
T 3hrp_A 141 NNTVLAYQR--DDPRVRLISVDDNKVTTVHPGFK-GGKPAVTKDKQRVYSIGWEG-----THTVYVYMKASGWAPTRIGQ 212 (409)
T ss_dssp TTEEEEEET--TTTEEEEEETTTTEEEEEEETCC-BCBCEECTTSSEEEEEBSST-----TCEEEEEEGGGTTCEEEEEE
T ss_pred CCCEEEEec--CCCcEEEEECCCCEEEEeeccCC-CCceeEecCCCcEEEEecCC-----CceEEEEEcCCCceeEEeee
Confidence 578888764 34678999999877655432211 11122222245677764321 1268899987553 233311
Q ss_pred CC--CCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCC-C-EEEEE--CCEEEE
Q 016421 221 MH--SPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAP-P-LVAVV--DNQLYA 292 (390)
Q Consensus 221 ~~--~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~-~-~~~~~--~g~l~v 292 (390)
.. .....+..++. ++.||+... ...+++||+.+.....+........ .... . .+++. ++.||+
T Consensus 213 ~~~~~~~~p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~--~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 213 LGSTFSGKIGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGS--LGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp CCTTSCSCCCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSC--CCCSSCCEEEEETTTTEEEE
T ss_pred ccchhcCCcEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCC--CCCCccccEEEeCCCCEEEE
Confidence 11 11122233333 689999421 2368899999887655422111100 1111 1 45554 589999
Q ss_pred EecCCCeEEEEeCCCC
Q 016421 293 VEYLTNMVKKYDKLKN 308 (390)
Q Consensus 293 ~gg~~~~v~~yd~~~~ 308 (390)
.+...+.|++||+...
T Consensus 284 ~d~~~~~I~~~~~~g~ 299 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGE 299 (409)
T ss_dssp EETTTTEEEEECTTCC
T ss_pred EeCCCCEEEEEecCCC
Confidence 9988889999998765
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=94.64 E-value=0.42 Score=42.85 Aligned_cols=147 Identities=13% Similarity=0.056 Sum_probs=66.9
Q ss_pred eEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEEC
Q 016421 156 AIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMD 234 (390)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 234 (390)
.++.+|+.+++.+.+.........+.+..- +..||+.+..... ...-.++.+|..++..+.+...+........+..+
T Consensus 30 ~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~-~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~d 108 (361)
T 3scy_A 30 YTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKD-QAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTN 108 (361)
T ss_dssp EEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSST-TCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEEC
T ss_pred EEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCC-CCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEEC
Confidence 456668888887665443111111111122 3457776543211 11223455566667777665444322222222236
Q ss_pred CE-EEEEecccCCCccCceEEEEeCCCCc-eEEccC-------CCCCCCCcCCCCCEEEE-ECC-EEEEEecCCCeEEEE
Q 016421 235 GK-FYVIGGMSSPTVSLTCGEEFDLETRK-WRKIEG-------MYPNVNRAAQAPPLVAV-VDN-QLYAVEYLTNMVKKY 303 (390)
Q Consensus 235 ~~-iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~-------~~~~~~~~~~~~~~~~~-~~g-~l~v~gg~~~~v~~y 303 (390)
++ ||+.. .. ...+..||+.++. ...+.. -+..........+.++. -+| .+|+.+...+.+.+|
T Consensus 109 g~~l~~~~-~~-----~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~ 182 (361)
T 3scy_A 109 GKNIVTAN-YS-----GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKF 182 (361)
T ss_dssp SSEEEEEE-TT-----TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCEEEEEE-CC-----CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEE
Confidence 65 55543 22 2356778876432 111110 00000000001112222 245 477777667888888
Q ss_pred eCCCCc
Q 016421 304 DKLKNT 309 (390)
Q Consensus 304 d~~~~~ 309 (390)
+...+.
T Consensus 183 ~~~~~~ 188 (361)
T 3scy_A 183 NINPNA 188 (361)
T ss_dssp EECTTC
T ss_pred EEcCCC
Confidence 776544
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.6 Score=42.97 Aligned_cols=136 Identities=15% Similarity=0.119 Sum_probs=74.3
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGF 231 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~ 231 (390)
.+.+++||..+++...+-.+........++.+ ++..++.|+.++ .+.++|..+++-... +........+.
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~~~--~~~h~~~v~~~ 195 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRN--MTSHSARVGSL 195 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEE--ECCCSSCEEEE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEEEE--EeCCCCceEEE
Confidence 46899999999887655443332222222222 567777777553 488999988764332 12222223344
Q ss_pred EECCEEEEEecccCCCccCceEEEEeCCCCceEE--ccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc
Q 016421 232 FMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRK--IEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 232 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~--~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
..++.+.+.|+.+. .+..+|..+..... +....... .......++..++.++.-+.+.+||..+.+
T Consensus 196 s~~~~~l~sgs~d~------~i~~~d~~~~~~~~~~~~~h~~~~------~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~ 263 (420)
T 4gga_A 196 SWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSGHSQEV------CGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263 (420)
T ss_dssp EEETTEEEEEETTS------EEEEEETTSSSCEEEEEECCSSCE------EEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred eeCCCEEEEEeCCC------ceeEeeecccceeeEEecccccce------eeeeecCCCCeeeeeeccccceEEeecccc
Confidence 56777777766542 45667766543321 11111100 001112245666677777788889877653
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.55 E-value=2.6 Score=38.11 Aligned_cols=193 Identities=14% Similarity=0.096 Sum_probs=91.2
Q ss_pred CCEEEEEcccccCCeEEEEECCC----C-cEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCc
Q 016421 142 GSELLVFGRELFDFAIWKYSLVF----R-SWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGR 214 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t----~-~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~ 214 (390)
++.+++.|+. ...+.+||..+ . .-..+.....+ -.++... ++.+++.|+.++ .+.+||..++.
T Consensus 78 ~~~~l~~~~~--dg~v~vw~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~l~s~~~dg------~v~iwd~~~~~ 147 (416)
T 2pm9_A 78 NNKIIAGALD--NGSLELYSTNEANNAINSMARFSNHSSS--VKTVKFNAKQDNVLASGGNNG------EIFIWDMNKCT 147 (416)
T ss_dssp SSSCEEEEES--SSCEEEECCSSTTSCCCEEEECCCSSSC--CCEEEECSSSTTBEEEECSSS------CEEBCBTTTTS
T ss_pred CCCeEEEEcc--CCeEEEeecccccccccchhhccCCccc--eEEEEEcCCCCCEEEEEcCCC------eEEEEECCCCc
Confidence 4555555543 35788888876 1 22222211111 1122222 256777776543 48889988765
Q ss_pred ------EEE-cCCCCCCCcCceEEEE--C-CEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEE
Q 016421 215 ------WEM-LPSMHSPRRLCSGFFM--D-GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVA 284 (390)
Q Consensus 215 ------W~~-~~~~~~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 284 (390)
-.. +............+.. + +.+++.|+.++ .+..||+.+.+-...-........+......++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 221 (416)
T 2pm9_A 148 ESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN------FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVE 221 (416)
T ss_dssp SCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS------CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEE
T ss_pred cccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC------CEEEEECCCCCcceEEeccccccccCCceEEEE
Confidence 111 1111111112222322 3 56777766542 477899988765433222210000000011222
Q ss_pred EE-CC-EEEEEecCCC---eEEEEeCCCCceEEccCCCccccCCCcceeEEEEe--CCEEEEEcCCCCCCCCeEEEeeec
Q 016421 285 VV-DN-QLYAVEYLTN---MVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC--GNELLVVGGQRGPEGENVVLNSWC 357 (390)
Q Consensus 285 ~~-~g-~l~v~gg~~~---~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~i~~y~ 357 (390)
.. ++ .+++.++..+ .+.+||..+..- .+..+.. .+...-.++... ++.+++.|+.++ .|.+||
T Consensus 222 ~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~---~~~~~v~~~~~s~~~~~~l~s~~~dg------~v~~wd 291 (416)
T 2pm9_A 222 WHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQTLNQ---GHQKGILSLDWCHQDEHLLLSSGRDN------TVLLWN 291 (416)
T ss_dssp ECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCS---CCSSCEEEEEECSSCSSCEEEEESSS------EEEEEC
T ss_pred ECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcEEeec---CccCceeEEEeCCCCCCeEEEEeCCC------CEEEee
Confidence 22 23 4666666555 899999887531 1111110 000111222222 677777777653 477888
Q ss_pred CCC
Q 016421 358 PKS 360 (390)
Q Consensus 358 ~~~ 360 (390)
..+
T Consensus 292 ~~~ 294 (416)
T 2pm9_A 292 PES 294 (416)
T ss_dssp SSS
T ss_pred CCC
Confidence 866
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.88 Score=40.31 Aligned_cols=193 Identities=10% Similarity=-0.001 Sum_probs=89.0
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcce-eeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLF-GSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.+++.|+. ...+.+||..+.+-... +....... +++.. ++..++.|+.+ ..+.+||..+++....-
T Consensus 43 ~~~~l~~~~~--dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~ 112 (369)
T 3zwl_B 43 EGDLLFSCSK--DSSASVWYSLNGERLGT--LDGHTGTIWSIDVDCFTKYCVTGSAD------YSIKLWDVSNGQCVATW 112 (369)
T ss_dssp TSCEEEEEES--SSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT------TEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEeC--CCEEEEEeCCCchhhhh--hhhcCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcEEEEe
Confidence 4445555542 35788899877654322 11111111 22222 45566666643 35889999887654432
Q ss_pred CCCCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCc----eEEccCCCCCC-CCcCC-CCCEEE--EECCEE
Q 016421 220 SMHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRK----WRKIEGMYPNV-NRAAQ-APPLVA--VVDNQL 290 (390)
Q Consensus 220 ~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~----W~~~~~~~~~~-~~~~~-~~~~~~--~~~g~l 290 (390)
....+ -..... -+++.++.++.+.. .....+..||+.+.. +......+... ..+.. ...... ..+++.
T Consensus 113 ~~~~~--v~~~~~~~~~~~l~~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (369)
T 3zwl_B 113 KSPVP--VKRVEFSPCGNYFLAILDNVM-KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKY 189 (369)
T ss_dssp ECSSC--EEEEEECTTSSEEEEEECCBT-TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCE
T ss_pred ecCCC--eEEEEEccCCCEEEEecCCcc-CCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCE
Confidence 21111 111222 25555555544311 112456667665442 22111111100 00000 011111 125667
Q ss_pred EEEecCCCeEEEEeCCC-CceEE-ccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 291 YAVEYLTNMVKKYDKLK-NTWDV-LGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 291 ~v~gg~~~~v~~yd~~~-~~W~~-v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++++..+.|.+||..+ .+-.. +...... -..+.. -++.+++.|+.++ .|.+||..+
T Consensus 190 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~~d~------~i~v~d~~~ 249 (369)
T 3zwl_B 190 IIAGHKDGKISKYDVSNNYEYVDSIDLHEKS-------ISDMQFSPDLTYFITSSRDT------NSFLVDVST 249 (369)
T ss_dssp EEEEETTSEEEEEETTTTTEEEEEEECCSSC-------EEEEEECTTSSEEEEEETTS------EEEEEETTT
T ss_pred EEEEcCCCEEEEEECCCCcEeEEEEecCCCc-------eeEEEECCCCCEEEEecCCc------eEEEEECCC
Confidence 77777778999999987 33222 2111111 112222 2566666666543 477888766
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.44 E-value=2.2 Score=36.74 Aligned_cols=222 Identities=13% Similarity=0.098 Sum_probs=98.0
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc-EeecCCCCCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS-WMKCEGMNHP 176 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~-W~~~~~~~~~ 176 (390)
..++..+....+..+|..+..-...-..... ......+..++.+++.|+. ...+.+|+..... ...+..+...
T Consensus 30 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~--dg~i~~~~~~~~~~~~~~~~~~~~ 103 (313)
T 3odt_A 30 SKVASVSRDGTVRLWSKDDQWLGTVVYTGQG----FLNSVCYDSEKELLLFGGK--DTMINGVPLFATSGEDPLYTLIGH 103 (313)
T ss_dssp TEEEEEETTSEEEEEEESSSEEEEEEEECSS----CEEEEEEETTTTEEEEEET--TSCEEEEETTCCTTSCC-CEECCC
T ss_pred CEEEEEEcCCcEEEEECCCCEEEEEeecCCc----cEEEEEECCCCCEEEEecC--CCeEEEEEeeecCCCCcccchhhc
Confidence 3444444456777888766543221111110 0001122235555565553 3456677765432 1111112212
Q ss_pred CcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE-E-CCEEEEEecccCCCccCceEE
Q 016421 177 RCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF-M-DGKFYVIGGMSSPTVSLTCGE 254 (390)
Q Consensus 177 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~v~ 254 (390)
.........++..++.|+.+ ..+.+||.......... .... -..... - ++..++.|+.++ .+.
T Consensus 104 ~~~i~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~--~~~~-v~~~~~~~~~~~~l~~~~~d~------~i~ 168 (313)
T 3odt_A 104 QGNVCSLSFQDGVVISGSWD------KTAKVWKEGSLVYNLQA--HNAS-VWDAKVVSFSENKFLTASADK------TIK 168 (313)
T ss_dssp SSCEEEEEEETTEEEEEETT------SEEEEEETTEEEEEEEC--CSSC-EEEEEEEETTTTEEEEEETTS------CEE
T ss_pred ccCEEEEEecCCEEEEEeCC------CCEEEEcCCcEEEeccc--CCCc-eeEEEEccCCCCEEEEEECCC------CEE
Confidence 22222233355566666643 34777882222222111 1111 111222 2 566666666543 366
Q ss_pred EEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-
Q 016421 255 EFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC- 333 (390)
Q Consensus 255 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~- 333 (390)
.||..... ..+...... ........-++. ++.++..+.+.+||..+.+-.. .+.... ..-.++...
T Consensus 169 i~d~~~~~-~~~~~~~~~-----~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~--~~~~~~----~~i~~~~~~~ 235 (313)
T 3odt_A 169 LWQNDKVI-KTFSGIHND-----VVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLR--TYEGHE----SFVYCIKLLP 235 (313)
T ss_dssp EEETTEEE-EEECSSCSS-----CEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEE--EEECCS----SCEEEEEECT
T ss_pred EEecCceE-EEEeccCcc-----cEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhh--hhhcCC----ceEEEEEEec
Confidence 78733221 111111110 001122334677 6777778899999998765322 111111 111223333
Q ss_pred CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 334 GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 334 ~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++ ++.|+.++ .|.+||..+
T Consensus 236 ~~~-l~~~~~dg------~v~iwd~~~ 255 (313)
T 3odt_A 236 NGD-IVSCGEDR------TVRIWSKEN 255 (313)
T ss_dssp TSC-EEEEETTS------EEEEECTTT
T ss_pred CCC-EEEEecCC------EEEEEECCC
Confidence 444 55565443 588899877
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=94.44 E-value=3 Score=39.94 Aligned_cols=143 Identities=11% Similarity=0.088 Sum_probs=77.0
Q ss_pred CEEEEEecc-CCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCce
Q 016421 187 SIAIIAGGS-DKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 187 ~~lyv~GG~-~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
+..++.|+. + ..+.+||..++.... ..+.........+.. ++++.+.|+.++ .+..||..+.+-
T Consensus 456 ~~~l~~~~~~d------~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg------~i~iw~~~~~~~ 522 (615)
T 1pgu_A 456 QNYVAVGLEEG------NTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVMG------KILLYDLQSREV 522 (615)
T ss_dssp SSEEEEEETTT------SCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEE
T ss_pred CCEEEEeecCC------CeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCCC------eEEEeeCCCCcc
Confidence 555666654 3 348899998876643 222222222333333 777777776543 477899987654
Q ss_pred EEccCCCCCCCCcCCCCCEEEE-E----------CCEEEEEecCCCeEEEEeCCCC-c-eEEccCCCccccCCCcceeEE
Q 016421 264 RKIEGMYPNVNRAAQAPPLVAV-V----------DNQLYAVEYLTNMVKKYDKLKN-T-WDVLGRLPVRADLSNGWGLAF 330 (390)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~-~----------~g~l~v~gg~~~~v~~yd~~~~-~-W~~v~~~~~~~~~~~~~~~~~ 330 (390)
.. .+... +......++. - ++++++.++..+.|.+||..+. + ...+..-... .....
T Consensus 523 ~~--~~~~~---h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~------v~~l~ 591 (615)
T 1pgu_A 523 KT--SRWAF---RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG------VNNLL 591 (615)
T ss_dssp EE--CCSCC---CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC------EEEEE
T ss_pred ee--EeecC---CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccc------eEEEE
Confidence 32 22210 0001111222 2 6788888888889999999886 2 2222211111 11112
Q ss_pred EEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 331 KACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 331 ~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..-+++ ++.+|.++ .|.+|+.++
T Consensus 592 ~s~~~~-l~s~~~d~------~v~iw~~~~ 614 (615)
T 1pgu_A 592 WETPST-LVSSGADA------CIKRWNVVL 614 (615)
T ss_dssp EEETTE-EEEEETTS------CEEEEEEC-
T ss_pred EcCCCC-eEEecCCc------eEEEEeeec
Confidence 234777 77777654 377888764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.15 E-value=1.9 Score=38.57 Aligned_cols=186 Identities=8% Similarity=-0.045 Sum_probs=89.7
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCC--CCCCCcc-eeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEG--MNHPRCL-FGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~--~~~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
++.+ +.|+ ....+.+||..+++-..... +...... .+++. -+++.++.|+.++ .+.++|..+++-..
T Consensus 93 d~~l-~~~s--~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~------~i~iwd~~~~~~~~ 163 (344)
T 4gqb_B 93 ERGI-LVAS--DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI------CIKVWDLAQQVVLS 163 (344)
T ss_dssp TTEE-EEEE--TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEE
T ss_pred CCeE-EEEE--CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC------eEEEEECCCCcEEE
Confidence 3443 4443 24578889988765321111 0011111 12222 2566777776543 48889998876433
Q ss_pred cCCCCCCCcCceEEEE--CC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEE
Q 016421 218 LPSMHSPRRLCSGFFM--DG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYA 292 (390)
Q Consensus 218 ~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v 292 (390)
. +.........+.. ++ .+++.|+.++ .+..||+.+.+-...-..... ......++.. ++++++
T Consensus 164 ~--~~~h~~~V~~~~~~~~~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 164 S--YRAHAAQVTCVAASPHKDSVFLSCSEDN------RILLWDTRCPKPASQIGCSAP----GYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp E--ECCCSSCEEEEEECSSCTTEEEEEETTS------CEEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEE
T ss_pred E--EcCcCCceEEEEecCCCCCceeeecccc------ccccccccccceeeeeeccee----eccceeeeecCCCCcceE
Confidence 2 1211112222222 33 5666666543 467799987764332111110 0000112222 566788
Q ss_pred EecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-C-CEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 293 VEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-G-NELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 293 ~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~-~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.|+..+.|.+||..+.+- +..+.... ..-.+++.. + .++++.|+.++ .|.+||..+
T Consensus 232 sg~~dg~v~~wd~~~~~~--~~~~~~h~----~~v~~v~fsp~g~~~lasgs~D~------~i~vwd~~~ 289 (344)
T 4gqb_B 232 FGDENGTVSLVDTKSTSC--VLSSAVHS----QCVTGLVFSPHSVPFLASLSEDC------SLAVLDSSL 289 (344)
T ss_dssp EEETTSEEEEEESCC--C--CEEEECCS----SCEEEEEECSSSSCCEEEEETTS------CEEEECTTC
T ss_pred EeccCCcEEEEECCCCcE--EEEEcCCC----CCEEEEEEccCCCeEEEEEeCCC------eEEEEECCC
Confidence 888888999999877542 21121111 111222222 3 35666676553 377888766
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.81 Score=41.26 Aligned_cols=144 Identities=10% Similarity=-0.017 Sum_probs=77.6
Q ss_pred EEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEE-EE--CCEEEEEecccCCCccCceEEEEeCCCCceE
Q 016421 188 IAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGF-FM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWR 264 (390)
Q Consensus 188 ~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 264 (390)
.+++.|+.++ .+.+||..++.....-...........+ .. ++.+++.|+.+ ..+..||+.+....
T Consensus 87 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~ 154 (383)
T 3ei3_B 87 TTVAVGSKGG------DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGSVIQ 154 (383)
T ss_dssp TEEEEEEBTS------CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSCEEE
T ss_pred CEEEEEcCCC------eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCCceE
Confidence 4666666543 4889999888766543322222222222 33 34666666543 35778999887666
Q ss_pred EccCCCCCCCCcCCCCCEEE-EECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-CCE-EEEEc
Q 016421 265 KIEGMYPNVNRAAQAPPLVA-VVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-GNE-LLVVG 341 (390)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~~~-lyv~G 341 (390)
.+........ ....++ .-++++++.|+..+.+..||.....-..+..-.. .-.++... ++. +++.|
T Consensus 155 ~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~l~s~ 223 (383)
T 3ei3_B 155 VFAKTDSWDY----WYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKA-------KVTHAEFNPRCDWLMATS 223 (383)
T ss_dssp EEECCCCSSC----CEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSS-------CEEEEEECSSCTTEEEEE
T ss_pred EEeccCCCCC----CeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCC-------cEEEEEECCCCCCEEEEE
Confidence 5543322100 001122 2356777778888899999986544333322111 11222222 344 77777
Q ss_pred CCCCCCCCeEEEeeecCCC
Q 016421 342 GQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 342 G~~~~~~~~~~i~~y~~~~ 360 (390)
+.++ .|.+||..+
T Consensus 224 ~~d~------~i~iwd~~~ 236 (383)
T 3ei3_B 224 SVDA------TVKLWDLRN 236 (383)
T ss_dssp ETTS------EEEEEEGGG
T ss_pred eCCC------EEEEEeCCC
Confidence 6553 577888765
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=93.98 E-value=2.6 Score=35.87 Aligned_cols=187 Identities=12% Similarity=-0.033 Sum_probs=100.8
Q ss_pred ccEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe---CCEEEEEcccccCCeEEEEECCCCcEeecCC
Q 016421 97 EHWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV---GSELLVFGRELFDFAIWKYSLVFRSWMKCEG 172 (390)
Q Consensus 97 ~~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~ 172 (390)
...||+.. +...+..+|+....-..+..... .....++. ++.||+... ....+.++++....-..+..
T Consensus 47 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~------~~p~~ia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~ 118 (267)
T 1npe_A 47 DKVVYWTDISEPSIGRASLHGGEPTTIIRQDL------GSPEGIALDHLGRTIFWTDS--QLDRIEVAKMDGTQRRVLFD 118 (267)
T ss_dssp TTEEEEEETTTTEEEEEESSSCCCEEEECTTC------CCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEC
T ss_pred CCEEEEEECCCCEEEEEecCCCCcEEEEECCC------CCccEEEEEecCCeEEEEEC--CCCEEEEEEcCCCCEEEEEE
Confidence 45677664 35678888887553222211100 01112232 578888753 24578888886543322221
Q ss_pred CCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE---CCEEEEEecccCCC
Q 016421 173 MNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM---DGKFYVIGGMSSPT 247 (390)
Q Consensus 173 ~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~ 247 (390)
... ....++++- ++.||+..... ....++++++....-+.+.... ........+ +++||+.-.
T Consensus 119 ~~~-~~P~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~dg~~~~~~~~~~--~~~P~gia~d~~~~~lyv~d~----- 186 (267)
T 1npe_A 119 TGL-VNPRGIVTDPVRGNLYWTDWNR----DNPKIETSHMDGTNRRILAQDN--LGLPNGLTFDAFSSQLCWVDA----- 186 (267)
T ss_dssp SSC-SSEEEEEEETTTTEEEEEECCS----SSCEEEEEETTSCCCEEEECTT--CSCEEEEEEETTTTEEEEEET-----
T ss_pred CCC-CCccEEEEeeCCCEEEEEECCC----CCcEEEEEecCCCCcEEEEECC--CCCCcEEEEcCCCCEEEEEEC-----
Confidence 111 111233332 68999985321 1246888887654333332111 112333333 568999742
Q ss_pred ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceE
Q 016421 248 VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWD 311 (390)
Q Consensus 248 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~ 311 (390)
..+.+.+||+....-..+.. .. .....++..++.||+.....+.|.++|+.+.+-.
T Consensus 187 -~~~~I~~~~~~g~~~~~~~~--~~-----~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 187 -GTHRAECLNPAQPGRRKVLE--GL-----QYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp -TTTEEEEEETTEEEEEEEEE--CC-----CSEEEEEEETTEEEEEETTTTEEEEEETTTTEEE
T ss_pred -CCCEEEEEecCCCceEEEec--CC-----CCceEEEEeCCEEEEEECCCCeEEEEeCCCCCce
Confidence 23578889987643222211 10 0112466678999999887889999999877643
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=93.94 E-value=4.9 Score=38.95 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=64.1
Q ss_pred cccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCcc--cCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--Eee
Q 016421 96 VEHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDEC--FNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--WMK 169 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~--~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~ 169 (390)
.+..+|+......++++|..+. .|..-...+.... ...........++.||+... ...++.+|..|++ |+.
T Consensus 67 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~---dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL---DASVVALNKNTGKVVWKK 143 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET---TTEEEEEESSSCCEEEEE
T ss_pred ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC---CCEEEEEECCCCCEEeee
Confidence 4678888776456999999855 4875433322110 00001223456888887542 3578999998885 765
Q ss_pred cCCCCCCC--cceeeeeeCC------EEEEEeccCCCCCccceEEEEECCCCc--EEE
Q 016421 170 CEGMNHPR--CLFGSGSLGS------IAIIAGGSDKNGHVLKSAELYDSTTGR--WEM 217 (390)
Q Consensus 170 ~~~~~~~r--~~~~~~~~~~------~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~ 217 (390)
-...+... .....++.++ .||+ |...........+..||..+++ |+.
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeec
Confidence 32211100 1112233455 6655 3221110124568999999886 865
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.93 E-value=3.3 Score=36.96 Aligned_cols=135 Identities=14% Similarity=0.126 Sum_probs=71.8
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeee----CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCce
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL----GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCS 229 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~ 229 (390)
+..+.+||..+++-... +........+..+ ++..++.|+.++ .+.+||..+++....- ........
T Consensus 175 D~~v~lwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg------~v~~wd~~~~~~~~~~--~~h~~~v~ 244 (354)
T 2pbi_B 175 DGTCALWDVESGQLLQS--FHGHGADVLCLDLAPSETGNTFVSGGCDK------KAMVWDMRSGQCVQAF--ETHESDVN 244 (354)
T ss_dssp TSEEEEEETTTCCEEEE--EECCSSCEEEEEECCCSSCCEEEEEETTS------CEEEEETTTCCEEEEE--CCCSSCEE
T ss_pred CCcEEEEeCCCCeEEEE--EcCCCCCeEEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCcEEEEe--cCCCCCeE
Confidence 45788999988764321 1111111111111 346777777653 4889999888754321 11111222
Q ss_pred EEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEE--EECCEEEEEecCCCeEEEEeC
Q 016421 230 GFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVA--VVDNQLYAVEYLTNMVKKYDK 305 (390)
Q Consensus 230 ~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~g~l~v~gg~~~~v~~yd~ 305 (390)
.+.. ++..++.|+.++ .+..||+.+..-...-..... ......+ ..+|++++.|+..+.|.+||.
T Consensus 245 ~v~~~p~~~~l~s~s~D~------~v~lwd~~~~~~~~~~~~~~~-----~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 245 SVRYYPSGDAFASGSDDA------TCRLYDLRADREVAIYSKESI-----IFGASSVDFSLSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp EEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEECCTTC-----CSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEeCCCCEEEEEeCCC------eEEEEECCCCcEEEEEcCCCc-----ccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence 3333 566677766543 467789887643322111110 0111122 235777888877789999998
Q ss_pred CCCc
Q 016421 306 LKNT 309 (390)
Q Consensus 306 ~~~~ 309 (390)
.+.+
T Consensus 314 ~~~~ 317 (354)
T 2pbi_B 314 LKGS 317 (354)
T ss_dssp TTCS
T ss_pred CCCc
Confidence 7654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.93 E-value=2.7 Score=36.04 Aligned_cols=183 Identities=11% Similarity=0.097 Sum_probs=85.4
Q ss_pred EeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 140 AVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 140 ~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
..++..++.|+. ...+.+||........ .....+.........++..++.|+.++ .+.+||..... ....
T Consensus 111 ~~~~~~l~~~~~--d~~i~~~d~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~-~~~~ 180 (313)
T 3odt_A 111 SFQDGVVISGSW--DKTAKVWKEGSLVYNL-QAHNASVWDAKVVSFSENKFLTASADK------TIKLWQNDKVI-KTFS 180 (313)
T ss_dssp EEETTEEEEEET--TSEEEEEETTEEEEEE-ECCSSCEEEEEEEETTTTEEEEEETTS------CEEEEETTEEE-EEEC
T ss_pred EecCCEEEEEeC--CCCEEEEcCCcEEEec-ccCCCceeEEEEccCCCCEEEEEECCC------CEEEEecCceE-EEEe
Confidence 334445555543 4567888832222211 111111111111222556666666543 37788833221 2222
Q ss_pred CCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEE-ccCCCCCCCCcCCCCCEEEEE-CCEEEEEecCC
Q 016421 220 SMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRK-IEGMYPNVNRAAQAPPLVAVV-DNQLYAVEYLT 297 (390)
Q Consensus 220 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg~~ 297 (390)
.............-++. ++.|+.+ ..+..||..+.+-.. +..... ....++.. ++ .++.++..
T Consensus 181 ~~~~~~i~~~~~~~~~~-~~~~~~d------g~i~i~d~~~~~~~~~~~~~~~-------~i~~~~~~~~~-~l~~~~~d 245 (313)
T 3odt_A 181 GIHNDVVRHLAVVDDGH-FISCSND------GLIKLVDMHTGDVLRTYEGHES-------FVYCIKLLPNG-DIVSCGED 245 (313)
T ss_dssp SSCSSCEEEEEEEETTE-EEEEETT------SEEEEEETTTCCEEEEEECCSS-------CEEEEEECTTS-CEEEEETT
T ss_pred ccCcccEEEEEEcCCCe-EEEccCC------CeEEEEECCchhhhhhhhcCCc-------eEEEEEEecCC-CEEEEecC
Confidence 11111111112234677 5555543 357889988765322 111111 01123332 44 35567777
Q ss_pred CeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 298 NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 298 ~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.+.+||..+.+-...-..+... -.++.. -+++ ++.|+.++ .|.+||.++
T Consensus 246 g~v~iwd~~~~~~~~~~~~~~~~------i~~~~~~~~~~-~~~~~~dg------~i~iw~~~~ 296 (313)
T 3odt_A 246 RTVRIWSKENGSLKQVITLPAIS------IWSVDCMSNGD-IIVGSSDN------LVRIFSQEK 296 (313)
T ss_dssp SEEEEECTTTCCEEEEEECSSSC------EEEEEECTTSC-EEEEETTS------CEEEEESCG
T ss_pred CEEEEEECCCCceeEEEeccCce------EEEEEEccCCC-EEEEeCCC------cEEEEeCCC
Confidence 89999999888654432222111 122222 2556 45566553 488999987
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.93 E-value=6 Score=39.92 Aligned_cols=217 Identities=10% Similarity=-0.022 Sum_probs=116.3
Q ss_pred EeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe---CCEEEEEcccccCCeEEEEECCCC----c-EeecC-CC
Q 016421 103 VCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV---GSELLVFGRELFDFAIWKYSLVFR----S-WMKCE-GM 173 (390)
Q Consensus 103 ~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~iy~~Gg~~~~~~~~~yd~~t~----~-W~~~~-~~ 173 (390)
+.....+..+++....+..+..... ....+.+ ++.||+.-.. ...++++++... . ...+. .+
T Consensus 400 ~an~~~Ir~i~l~~~~~~~l~~~~~-------~~~gl~~d~~~~~lY~sD~~--~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 400 FTNRHEVRKMTLDRSEYTSLIPNLR-------NVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EECBSSEEEECTTSCCCEEEECSCS-------SEEEEEEETTTTEEEEEETT--TTEEEEEEC--------CEEEECSSC
T ss_pred cccccceeEeeccCCcceeeecCCC-------ceEEEeecccCCeeEEeecc--ceeEEEEeccCCCCCcceeEEEecCC
Confidence 3345566777776665554422111 1122332 5788876532 356777776542 2 22222 12
Q ss_pred CCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC--CCCCCCcCceEEEE---CCEEEEEecccCCCc
Q 016421 174 NHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP--SMHSPRRLCSGFFM---DGKFYVIGGMSSPTV 248 (390)
Q Consensus 174 ~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~ 248 (390)
..+. ..++-..+++||+.-.. ...|+++++....-+.+. .+.. ...+++ ++.||+.--.
T Consensus 471 ~~P~-GLAvD~~~~~LY~tD~~------~~~I~v~~ldG~~~~~l~~~~l~~----P~gIaVDp~~g~LYwtD~g----- 534 (791)
T 3m0c_C 471 QAPD-GLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRENGSK----PRAIVVDPVHGFMYWTDWG----- 534 (791)
T ss_dssp SCCC-EEEEETTTTEEEEEETT------TTEEEEEETTSSSEEEEEECTTCC----EEEEEEETTTTEEEEEECS-----
T ss_pred CCcc-eeeeeecCCcEEEEecC------CCeEEEEeCCCCeEEEEEeCCCCC----cceEEEecCCCCEEEecCC-----
Confidence 2221 12222247899998532 356899998866654442 2222 233333 6899997311
Q ss_pred cCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcc
Q 016421 249 SLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGW 326 (390)
Q Consensus 249 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~ 326 (390)
....|+++++....=..+..-.. ....++++- +++||+.......|+++|+....=..+....... ..
T Consensus 535 ~~~~I~~~~~dG~~~~~lv~~~l------~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l----~~ 604 (791)
T 3m0c_C 535 TPAKIKKGGLNGVDIYSLVTENI------QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL----AH 604 (791)
T ss_dssp SSCEEEEEETTSCCEEEEECSSC------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTT----SS
T ss_pred CCCeEEEEecCCCceEEEEeCCC------CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCcc----CC
Confidence 12468888887654443322111 011134443 7899999988899999999765433332211111 01
Q ss_pred eeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 327 GLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 327 ~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..++++.+++||+.-... ..|+..+..+
T Consensus 605 P~glav~~~~lYwtD~~~------~~I~~~dk~t 632 (791)
T 3m0c_C 605 PFSLAVFEDKVFWTDIIN------EAIFSANRLT 632 (791)
T ss_dssp EEEEEEETTEEEEEETTT------TEEEEEETTT
T ss_pred CCEEEEeCCEEEEEECCC------CEEEEEeCCC
Confidence 245667899999988543 2466666554
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=93.91 E-value=3.5 Score=37.17 Aligned_cols=183 Identities=15% Similarity=0.159 Sum_probs=93.3
Q ss_pred CCeEEEEECCCCcEeecC--CCCCCC-cce-eeee--eCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCCCC
Q 016421 154 DFAIWKYSLVFRSWMKCE--GMNHPR-CLF-GSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHSPR 225 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~--~~~~~r-~~~-~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r 225 (390)
+..+.+||..+++-...- ..+... ... .+.. .++.+++.|+.++ .+.+||..... -..+. ...
T Consensus 179 D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~------~v~~wd~~~~~~~~~~~~---~h~ 249 (380)
T 3iz6_a 179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT------TVRLWDLRITSRAVRTYH---GHE 249 (380)
T ss_dssp TSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS------CEEEEETTTTCCCCEEEC---CCS
T ss_pred CCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC------eEEEEECCCCCcceEEEC---CcC
Confidence 457888998887653321 111111 111 1111 2567888887654 37888986321 11111 111
Q ss_pred cCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCC-CCcCCCCCEEE-EECCEEEEEecCCCeEE
Q 016421 226 RLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNV-NRAAQAPPLVA-VVDNQLYAVEYLTNMVK 301 (390)
Q Consensus 226 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~-~~~~~~~~~~~-~~~g~l~v~gg~~~~v~ 301 (390)
.....+.. +++.++.|+.++ .+..||+.+..-...-...... .........++ ..+|++++.|+..+.+.
T Consensus 250 ~~v~~v~~~p~~~~l~s~s~D~------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 323 (380)
T 3iz6_a 250 GDINSVKFFPDGQRFGTGSDDG------TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCY 323 (380)
T ss_dssp SCCCEEEECTTSSEEEEECSSS------CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEE
T ss_pred CCeEEEEEecCCCeEEEEcCCC------eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEE
Confidence 11122222 567777766543 4677999887543322111110 00000111222 34678888888888999
Q ss_pred EEeCCCCceEE-ccCCCccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 302 KYDKLKNTWDV-LGRLPVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 302 ~yd~~~~~W~~-v~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+||..+.+-.. +..+..... +.-.++. .-++..++.|+.++ .|.+|+...
T Consensus 324 vwd~~~~~~~~~~~~~~~~h~---~~v~~l~~s~dg~~l~sgs~D~------~i~iW~~~~ 375 (380)
T 3iz6_a 324 VWDTLLAEMVLNLGTLQNSHE---GRISCLGLSSDGSALCTGSWDK------NLKIWAFSG 375 (380)
T ss_dssp EEETTTCCEEEEECCSCSSCC---CCCCEEEECSSSSEEEEECTTS------CEEEEECCS
T ss_pred EEECCCCceEEEEecccCCCC---CceEEEEECCCCCEEEEeeCCC------CEEEEecCC
Confidence 99987766433 222211111 1111222 23677888888764 377888765
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=93.90 E-value=3 Score=36.42 Aligned_cols=185 Identities=11% Similarity=-0.030 Sum_probs=87.1
Q ss_pred cEEEEEeCCCeeEEEecCCCc----eeeCCCCCCCcccCCCCeeEEEeCCE-EEEEcccccCCeEEEEEC-CCCcEeecC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKK----WMALPKIPCDECFNHADKESLAVGSE-LLVFGRELFDFAIWKYSL-VFRSWMKCE 171 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~----W~~l~~~p~~~~~~~~~~~~~~~~~~-iy~~Gg~~~~~~~~~yd~-~t~~W~~~~ 171 (390)
..|+..+....+..||..... ...+..... ......+..++. .++.|+. ...+.+||. .+.+...+.
T Consensus 24 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~ 96 (342)
T 1yfq_A 24 SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH-----PLLCCNFIDNTDLQIYVGTV--QGEILKVDLIGSPSFQALT 96 (342)
T ss_dssp TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS-----CEEEEEEEESSSEEEEEEET--TSCEEEECSSSSSSEEECB
T ss_pred CEEEEEcCCCeEEEEEeCCCCccccceeeeecCC-----ceEEEEECCCCCcEEEEEcC--CCeEEEEEeccCCceEecc
Confidence 445444455667778776554 221110000 000112223555 5555553 457899999 887765554
Q ss_pred CCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc-------EEEcCCCCCCCcCceEEEECCEEEEEeccc
Q 016421 172 GMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR-------WEMLPSMHSPRRLCSGFFMDGKFYVIGGMS 244 (390)
Q Consensus 172 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-------W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 244 (390)
..+....-.++....+..++.|+.+ ..+.+||..+.. .+.+..+.....-.+.....+. +++|+.+
T Consensus 97 ~~~~~~~v~~l~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~d 169 (342)
T 1yfq_A 97 NNEANLGICRICKYGDDKLIAASWD------GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-LIVGMNN 169 (342)
T ss_dssp SCCCCSCEEEEEEETTTEEEEEETT------SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-EEEEEST
T ss_pred ccCCCCceEEEEeCCCCEEEEEcCC------CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-EEEEeCC
Confidence 4111111122222224455555543 347788876400 2222222212111222333445 4444432
Q ss_pred CCCccCceEEEEeCCC-Cc--eEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCC
Q 016421 245 SPTVSLTCGEEFDLET-RK--WRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 245 ~~~~~~~~v~~yd~~~-~~--W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~ 308 (390)
..+..||..+ .. ......... .....++.. ++.+++.|+..+.+.+||....
T Consensus 170 ------~~i~i~d~~~~~~~~~~~~~~~~~------~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 170 ------SQVQWFRLPLCEDDNGTIEESGLK------YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp ------TEEEEEESSCCTTCCCEEEECSCS------SCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred ------CeEEEEECCccccccceeeecCCC------CceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 3577899887 33 222211111 001123333 5778888887788888776554
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=93.87 E-value=2.6 Score=36.74 Aligned_cols=147 Identities=15% Similarity=0.043 Sum_probs=71.3
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
++.+++.|+. +..+..++.......................-.+..++.|+.++ .+.++|.....-.....
T Consensus 97 dg~~l~s~~~--d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~------~~~~~d~~~~~~~~~~~- 167 (340)
T 4aow_A 97 DGQFALSGSW--DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK------TIKLWNTLGVCKYTVQD- 167 (340)
T ss_dssp TSSEEEEEET--TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS------CEEEECTTSCEEEEECS-
T ss_pred CCCEEEEEcc--cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCC------eEEEEEeCCCceEEEEe-
Confidence 4555555543 34677788777655443322222222122222445555665443 36677766543322211
Q ss_pred CCCCcCceEEEE----CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecC
Q 016421 222 HSPRRLCSGFFM----DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYL 296 (390)
Q Consensus 222 ~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~ 296 (390)
.........+.+ .+.+++.|+.+ ..+..||..+.+....-..... ....++. -++++++.|+.
T Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d------~~i~i~d~~~~~~~~~~~~h~~------~v~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNSSNPIIVSCGWD------KLVKVWNLANCKLKTNHIGHTG------YLNTVTVSPDGSLCASGGK 235 (340)
T ss_dssp SSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTTEEEEEECCCSS------CEEEEEECTTSSEEEEEET
T ss_pred ccccCcccceEEccCCCCcEEEEEcCC------CEEEEEECCCCceeeEecCCCC------cEEEEEECCCCCEEEEEeC
Confidence 111111222222 22455555543 2467788887664332111110 0011222 25777888888
Q ss_pred CCeEEEEeCCCCc
Q 016421 297 TNMVKKYDKLKNT 309 (390)
Q Consensus 297 ~~~v~~yd~~~~~ 309 (390)
-+.+.+||..+.+
T Consensus 236 Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 236 DGQAMLWDLNEGK 248 (340)
T ss_dssp TCEEEEEETTTTE
T ss_pred CCeEEEEEeccCc
Confidence 8899999987754
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=93.85 E-value=0.39 Score=42.44 Aligned_cols=113 Identities=10% Similarity=-0.072 Sum_probs=65.1
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCce
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
++++|+.+... ..+.+||+.+++.+.+...+ . .....+.. +|++|+....... ....+++||+.+...
T Consensus 55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~-~-~~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~~~ 124 (333)
T 2dg1_A 55 QGQLFLLDVFE------GNIFKINPETKEIKRPFVSH-K-ANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGDNL 124 (333)
T ss_dssp TSCEEEEETTT------CEEEEECTTTCCEEEEEECS-S-SSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSCSC
T ss_pred CCCEEEEECCC------CEEEEEeCCCCcEEEEeeCC-C-CCcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCCEE
Confidence 57788876532 35899999998877643111 1 12223333 6788887533211 124688999998876
Q ss_pred EEc-cCCCCCCCCcCCCCCEEE-EECCEEEEEecC------CCeEEEEeCCCCceEEc
Q 016421 264 RKI-EGMYPNVNRAAQAPPLVA-VVDNQLYAVEYL------TNMVKKYDKLKNTWDVL 313 (390)
Q Consensus 264 ~~~-~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg~------~~~v~~yd~~~~~W~~v 313 (390)
..+ ...... .....++ .-+|++|+.... ...+++||+++++...+
T Consensus 125 ~~~~~~~~~~-----~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 125 QDIIEDLSTA-----YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp EEEECSSSSC-----CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred EEEEccCccC-----CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence 533 211111 0111122 236788887542 35799999988776654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.84 E-value=2.5 Score=36.43 Aligned_cols=228 Identities=11% Similarity=0.061 Sum_probs=100.9
Q ss_pred EEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcc
Q 016421 100 VYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCL 179 (390)
Q Consensus 100 l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~ 179 (390)
++..+....+..+|..+.+...+-.+..+.. ......+..++..++.|+. +..+.+||..+++-........ ..
T Consensus 38 ~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~--~V~~v~~~~~~~~l~sgs~--Dg~v~iw~~~~~~~~~~~~~h~--~~ 111 (318)
T 4ggc_A 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGE--YISSVAWIKEGNYLAVGTS--SAEVQLWDVQQQKRLRNMTSHS--AR 111 (318)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCSTTC--CEEEEEECTTSSEEEEEET--TSEEEEEETTTTEEEEEEECCS--SC
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecCCCC--eEEEEEECCCCCEEEEEEC--CCcEEEeecCCceeEEEecCcc--ce
Confidence 4444546678889998876554322221110 0000112225566666653 4578899998876433211111 11
Q ss_pred eeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEE--EECCEEEEEecccCCCccCceEEEEe
Q 016421 180 FGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGF--FMDGKFYVIGGMSSPTVSLTCGEEFD 257 (390)
Q Consensus 180 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~v~~yd 257 (390)
.......+.+.+.|+..+ .+..++..+...... .+.......... ..+++..+.|+.++ .+..||
T Consensus 112 ~~~~~~~~~~l~s~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~d~------~i~iwd 178 (318)
T 4ggc_A 112 VGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVA-TLSGHSQEVCGLRWAPDGRHLASGGNDN------LVNVWP 178 (318)
T ss_dssp EEEEEEETTEEEEEETTS------EEEEEETTSSSCEEE-EEECCSSCEEEEEECTTSSEEEEEETTS------CEEEEE
T ss_pred EEEeecCCCEEEEEecCC------ceEeeecCCCceeEE-EEcCccCceEEEEEcCCCCEEEEEecCc------ceeEEE
Confidence 222333455555555432 345555554432211 111111111111 22555555555432 366788
Q ss_pred CCCCceEE--ccCCCCCCCCcCCCCCEEEEE--CCEE-EEEe-cCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEE
Q 016421 258 LETRKWRK--IEGMYPNVNRAAQAPPLVAVV--DNQL-YAVE-YLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK 331 (390)
Q Consensus 258 ~~~~~W~~--~~~~~~~~~~~~~~~~~~~~~--~g~l-~v~g-g~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~ 331 (390)
..+.+-.. ....... .......+.. ++.+ ++.+ ...+.+..||.....-.......... ......
T Consensus 179 ~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v-----~~~~~~ 249 (318)
T 4ggc_A 179 SAPGEGGWVPLQTFTQH----QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV-----CSILWS 249 (318)
T ss_dssp SSCBTTBSCCSEEECCC----CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCE-----EEEEEE
T ss_pred CCCCcccccceeeeccc----CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeee-----eeeeec
Confidence 87653211 1000000 0000011111 2233 3333 34567889998877654432222111 112222
Q ss_pred EeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 332 ACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 332 ~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..++.+++.+|.... .|.+||..+
T Consensus 250 ~~~~~~~~~sg~~d~-----~i~iwd~~~ 273 (318)
T 4ggc_A 250 PHYKELISGHGFAQN-----QLVIWKYPT 273 (318)
T ss_dssp TTTTEEEEEECTTTC-----CEEEEETTT
T ss_pred ccccceEEEEEcCCC-----EEEEEECCC
Confidence 235566666554321 477898866
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=93.81 E-value=4 Score=37.53 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=49.7
Q ss_pred eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee---CCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016421 141 VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL---GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 141 ~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
.++.+++.|+. ...+.+||...+.-. .+.........+.+ +..+++.|+.++ .+.+||..+..-..
T Consensus 219 ~~~~~l~~g~~--dg~i~~wd~~~~~~~---~~~~h~~~v~~v~~~p~~~~~~~s~s~d~------~v~iwd~~~~~~~~ 287 (435)
T 4e54_B 219 ASSRMVVTGDN--VGNVILLNMDGKELW---NLRMHKKKVTHVALNPCCDWFLATASVDQ------TVKIWDLRQVRGKA 287 (435)
T ss_dssp TTTTEEEEECS--SSBEEEEESSSCBCC---CSBCCSSCEEEEEECTTCSSEEEEEETTS------BCCEEETTTCCSSS
T ss_pred CCCCEEEEEeC--CCcEeeeccCcceeE---EEecccceEEeeeecCCCceEEEEecCcc------eeeEEecccccccc
Confidence 35566666653 357888897654322 22211111222222 345666666543 36678887654321
Q ss_pred cC-CCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCc
Q 016421 218 LP-SMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 218 ~~-~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
.- ...........+.. +|...+.|+.++ .+..||..+..
T Consensus 288 ~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~------~i~iwd~~~~~ 329 (435)
T 4e54_B 288 SFLYSLPHRHPVNAACFSPDGARLLTTDQKS------EIRVYSASQWD 329 (435)
T ss_dssp CCSBCCBCSSCEEECCBCTTSSEEEEEESSS------CEEEEESSSSS
T ss_pred eEEEeeeccccccceeECCCCCeeEEEcCCC------EEEEEECCCCc
Confidence 10 00111111111221 566666666543 36678877643
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.42 Score=44.33 Aligned_cols=108 Identities=7% Similarity=-0.035 Sum_probs=59.5
Q ss_pred CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE---CCEEEEEecccCCCccCceEEEEeCCCCce
Q 016421 187 SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 187 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
+.+++.|+.++ .+.++|..++.-..+-........-..+.. ++.+++.|+.++ .+.++|+.++..
T Consensus 132 ~~~lasGs~dg------~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~------~v~iwd~~~~~~ 199 (435)
T 4e54_B 132 PSTVAVGSKGG------DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG------TTRLQDFKGNIL 199 (435)
T ss_dssp TTCEEEEETTS------CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS------CEEEEETTSCEE
T ss_pred CCEEEEEeCCC------EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC------EEEEeeccCCce
Confidence 44566676543 378888877654332222212222222322 566666666543 467789988766
Q ss_pred EEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc
Q 016421 264 RKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
..+....... ..........++.+++.|+..+.|..||...+.
T Consensus 200 ~~~~~~~~~~---~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~ 242 (435)
T 4e54_B 200 RVFASSDTIN---IWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE 242 (435)
T ss_dssp EEEECCSSCS---CCCCCEEEETTTTEEEEECSSSBEEEEESSSCB
T ss_pred eEEeccCCCC---ccEEEEEECCCCCEEEEEeCCCcEeeeccCcce
Confidence 5544322211 001112233467788888888899999987653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.76 E-value=3.6 Score=36.85 Aligned_cols=173 Identities=10% Similarity=0.030 Sum_probs=95.6
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC--CCCCCcCceE
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS--MHSPRRLCSG 230 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~--~~~~r~~~~~ 230 (390)
+.+.++++.......+..- .....+++. .++.||+.--. ...+.++++....-+.+.. +..+ .+.
T Consensus 53 ~~I~~i~~~g~~~~~~~~~--~~~~~~l~~d~~~~~ly~~D~~------~~~I~r~~~~g~~~~~~~~~~~~~p---~gl 121 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSDVT------LDRILRANLNGSNVEEVVSTGLESP---GGL 121 (349)
T ss_dssp SCEEEECTTSCCEEEEECS--CSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECSSCSCC---CEE
T ss_pred cceEEEeCCCCeeEEeecC--CCceEEEEEeccccEEEEEecc------CCceEEEecCCCCceEEEeCCCCCc---cEE
Confidence 3577777777666554321 112223333 36899998432 3568899998776554321 2222 233
Q ss_pred EE--ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCC-CeEEEEeC
Q 016421 231 FF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLT-NMVKKYDK 305 (390)
Q Consensus 231 ~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~-~~v~~yd~ 305 (390)
++ .+++||+.-.. ...|+++++....-..+...... ....+++- +|.||+.+... ..|+++|+
T Consensus 122 avd~~~g~ly~~d~~------~~~I~~~~~dG~~~~~l~~~~l~------~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 122 AVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLWQSLE------KPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp EEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECTTCS------CEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEecCCCeEEEEcCC------CCeEEEEcCCCCceEEEEeCCCC------CcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 33 37899997432 34688888876543333211100 01134544 68999998655 89999998
Q ss_pred CCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 306 LKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 306 ~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+...-..+..-. .... .|.++-..+++||+.-... ..|+++|++.
T Consensus 190 dG~~~~~~~~~~--~~~P--nGla~d~~~~~lY~aD~~~------~~I~~~~~dG 234 (349)
T 3v64_C 190 DGSGRRIIADTH--LFWP--NGLTIDYAGRRMYWVDAKH------HVIERANLDG 234 (349)
T ss_dssp TSCSCEESCCSS--CSCE--EEEEEETTTTEEEEEETTT------TEEEEEETTS
T ss_pred CCCCcEEEEECC--CCCc--ceEEEeCCCCEEEEEECCC------CEEEEEeCCC
Confidence 876544442211 1100 1222222478999986532 2477777654
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=93.63 E-value=5.2 Score=38.26 Aligned_cols=146 Identities=16% Similarity=0.118 Sum_probs=75.8
Q ss_pred EEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCc---CceEEEE--C-CEEEEEecccCCCccCceEEEEeCCCCc
Q 016421 189 AIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRR---LCSGFFM--D-GKFYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 189 lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~---~~~~~~~--~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
+++.|+.+ ..+.+||..+.+-... +..... ....+.. + ++.++.|+.++ .+..||..+.+
T Consensus 175 ~l~~~~~d------~~v~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~ 240 (615)
T 1pgu_A 175 RSMTVGDD------GSVVFYQGPPFKFSAS--DRTHHKQGSFVRDVEFSPDSGEFVITVGSDR------KISCFDGKSGE 240 (615)
T ss_dssp EEEEEETT------TEEEEEETTTBEEEEE--ECSSSCTTCCEEEEEECSTTCCEEEEEETTC------CEEEEETTTCC
T ss_pred EEEEEeCC------CcEEEEeCCCcceeee--ecccCCCCceEEEEEECCCCCCEEEEEeCCC------eEEEEECCCCC
Confidence 66666643 3588899876654322 221111 2223332 4 67777766543 47789988876
Q ss_pred eEEccCCC--CCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEE
Q 016421 263 WRKIEGMY--PNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVV 340 (390)
Q Consensus 263 W~~~~~~~--~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~ 340 (390)
....-..+ .. ......+...++..++.++..+.+.+||..+.+-...-..+..... ....++...++..++.
T Consensus 241 ~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~ 314 (615)
T 1pgu_A 241 FLKYIEDDQEPV----QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG--NQQVGVVATGNGRIIS 314 (615)
T ss_dssp EEEECCBTTBCC----CSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGG--GCEEEEEEEETTEEEE
T ss_pred EeEEeccccccc----CCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCccc--CceeEEEeCCCCeEEE
Confidence 54322110 10 0011112222777888888778999999987764432222210000 0112222336666666
Q ss_pred cCCCCCCCCeEEEeeecCCC
Q 016421 341 GGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 341 GG~~~~~~~~~~i~~y~~~~ 360 (390)
|+.++ .|.+||..+
T Consensus 315 ~~~~g------~i~~~d~~~ 328 (615)
T 1pgu_A 315 LSLDG------TLNFYELGH 328 (615)
T ss_dssp EETTS------CEEEEETTE
T ss_pred EECCC------CEEEEECCC
Confidence 76553 477888754
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=93.56 E-value=4.1 Score=43.26 Aligned_cols=226 Identities=10% Similarity=-0.002 Sum_probs=104.1
Q ss_pred EEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCC
Q 016421 100 VYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR 177 (390)
Q Consensus 100 l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r 177 (390)
+...+....+..+|..+.+.... +..+. ..-..++ .++.+++.|+. +..+.+||..+++....-. ...
T Consensus 630 l~s~~~d~~i~vw~~~~~~~~~~--~~~h~----~~v~~~~~s~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~--~~~ 699 (1249)
T 3sfz_A 630 IASCGADKTLQVFKAETGEKLLD--IKAHE----DEVLCCAFSSDDSYIATCSA--DKKVKIWDSATGKLVHTYD--EHS 699 (1249)
T ss_dssp EEEEETTSCEEEEETTTCCEEEE--ECCCS----SCEEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEEEE--CCS
T ss_pred EEEEeCCCeEEEEECCCCCEEEE--eccCC----CCEEEEEEecCCCEEEEEeC--CCeEEEEECCCCceEEEEc--CCC
Confidence 33333456677888776543221 11110 0111222 25555666552 4578999998876432211 111
Q ss_pred cceeeeee----CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCc
Q 016421 178 CLFGSGSL----GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLT 251 (390)
Q Consensus 178 ~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 251 (390)
.....+.+ ++.+++.|+.+ ..+.+||..++.....- .........+.. ++...+.|+.+ .
T Consensus 700 ~~v~~~~~~~~~~~~~l~sg~~d------~~v~vwd~~~~~~~~~~--~~h~~~v~~~~~sp~~~~l~s~s~d------g 765 (1249)
T 3sfz_A 700 EQVNCCHFTNKSNHLLLATGSND------FFLKLWDLNQKECRNTM--FGHTNSVNHCRFSPDDELLASCSAD------G 765 (1249)
T ss_dssp SCEEEEEECSSSSCCEEEEEETT------SCEEEEETTSSSEEEEE--CCCSSCEEEEEECSSTTEEEEEESS------S
T ss_pred CcEEEEEEecCCCceEEEEEeCC------CeEEEEECCCcchhhee--cCCCCCEEEEEEecCCCEEEEEECC------C
Confidence 11122222 33455555543 34888999887654321 111112222222 56666666543 2
Q ss_pred eEEEEeCCCCceEEccCCCC---C-----CCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCC
Q 016421 252 CGEEFDLETRKWRKIEGMYP---N-----VNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLS 323 (390)
Q Consensus 252 ~v~~yd~~~~~W~~~~~~~~---~-----~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~ 323 (390)
.+..||..+..-........ . .............-+|+.+++++ .+.+..||..+..............
T Consensus 766 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~-- 842 (1249)
T 3sfz_A 766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHST-- 842 (1249)
T ss_dssp EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSC--
T ss_pred eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCc--
Confidence 46678877654322111000 0 00000000011123455555544 4789999988876544321111111
Q ss_pred CcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 324 NGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 324 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.......-++.++++|+.++ .|.+||.++
T Consensus 843 --v~~~~~sp~~~~l~~~~~dg------~v~vwd~~~ 871 (1249)
T 3sfz_A 843 --IQYCDFSPYDHLAVIALSQY------CVELWNIDS 871 (1249)
T ss_dssp --CCEEEECSSTTEEEEECSSS------CEEEEETTT
T ss_pred --eEEEEEcCCCCEEEEEeCCC------eEEEEEcCC
Confidence 00112223567777777553 377888765
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.55 E-value=3.2 Score=36.55 Aligned_cols=142 Identities=15% Similarity=0.118 Sum_probs=71.9
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeee---eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSG---SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~---~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
++..++.|+ ....+.+||..+.+.........+ -.++. .-++.+++.|+.+ ..+.+||..+++-...
T Consensus 97 ~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~ 166 (368)
T 3mmy_A 97 DGSKVFTAS--CDKTAKMWDLSSNQAIQIAQHDAP--VKTIHWIKAPNYSCVMTGSWD------KTLKFWDTRSSNPMMV 166 (368)
T ss_dssp TSSEEEEEE--TTSEEEEEETTTTEEEEEEECSSC--EEEEEEEECSSCEEEEEEETT------SEEEEECSSCSSCSEE
T ss_pred CCCEEEEEc--CCCcEEEEEcCCCCceeeccccCc--eEEEEEEeCCCCCEEEEccCC------CcEEEEECCCCcEEEE
Confidence 455555554 245789999988876553221111 11222 2356777777654 3488899887653221
Q ss_pred CCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEE-EEC----CEEE
Q 016421 219 PSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVA-VVD----NQLY 291 (390)
Q Consensus 219 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~-~~~----g~l~ 291 (390)
+..+............+++.++ + ..+..||..... +..+....... ...+. ..+ ...+
T Consensus 167 --~~~~~~~~~~~~~~~~~~~~~~-~------~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 231 (368)
T 3mmy_A 167 --LQLPERCYCADVIYPMAVVATA-E------RGLIVYQLENQPSEFRRIESPLKHQ------HRCVAIFKDKQNKPTGF 231 (368)
T ss_dssp --EECSSCEEEEEEETTEEEEEEG-G------GCEEEEECSSSCEEEEECCCSCSSC------EEEEEEEECTTSCEEEE
T ss_pred --EecCCCceEEEecCCeeEEEeC-C------CcEEEEEeccccchhhhccccccCC------CceEEEcccCCCCCCeE
Confidence 1111112223334555444433 2 236667776543 33333221110 00111 122 2336
Q ss_pred EEecCCCeEEEEeCCCC
Q 016421 292 AVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 292 v~gg~~~~v~~yd~~~~ 308 (390)
+.|+..+.+.+||....
T Consensus 232 ~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 232 ALGSIEGRVAIHYINPP 248 (368)
T ss_dssp EEEETTSEEEEEESSCS
T ss_pred EEecCCCcEEEEecCCC
Confidence 77777888999998775
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=93.47 E-value=4.2 Score=36.64 Aligned_cols=231 Identities=15% Similarity=0.141 Sum_probs=108.9
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR 177 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r 177 (390)
..|...+....+..+|..+.+-...-...... .....+..++..++.||.+ ..+.+||..+..-.. ..++..+
T Consensus 79 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~----v~~~~~s~~g~~las~~~d--~~v~iw~~~~~~~~~-~~~~~~~ 151 (380)
T 3iz6_a 79 NWIVSASQDGRLIVWNALTSQKTHAIKLHCPW----VMECAFAPNGQSVACGGLD--SACSIFNLSSQADRD-GNMPVSR 151 (380)
T ss_dssp SCEEEEETTSEEEEEETTTTEEEEEEECCCTT----CCCCEECTTSSEEEECCSS--SCCEEEECCCCSSCC-CSSTTCC
T ss_pred CEEEEEeCCCeEEEEECCCCccceEEecCCCC----EEEEEECCCCCEEEEeeCC--CcEEEEECCCCcccc-CCcccee
Confidence 34444444566777887765432211111110 0111334456666777643 456677765432111 0111111
Q ss_pred --cce-----eeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC--CCCCCCcC-ceEEEE---CCEEEEEec
Q 016421 178 --CLF-----GSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP--SMHSPRRL-CSGFFM---DGKFYVIGG 242 (390)
Q Consensus 178 --~~~-----~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~~-~~~~~~---~~~iyv~GG 242 (390)
..| .+... ++..++.|+.+ ..+.+||..++.-...- ..+..+.. ...+.. ++.+++.|+
T Consensus 152 ~~~gh~~~v~~~~~~~~~~~~l~s~s~D------~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs 225 (380)
T 3iz6_a 152 VLTGHKGYASSCQYVPDQETRLITGSGD------QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225 (380)
T ss_dssp BCCCCSSCCCCCBCCSSSSSCEEEECTT------SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEE
T ss_pred eccCCCcceEEEEEecCCCCEEEEECCC------CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEE
Confidence 111 11111 23345555543 34888999888754321 22222221 122222 667888777
Q ss_pred ccCCCccCceEEEEeCCCC--ceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCC-Cc
Q 016421 243 MSSPTVSLTCGEEFDLETR--KWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRL-PV 318 (390)
Q Consensus 243 ~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~-~~ 318 (390)
.++ .+..||+... .-..+..... ....++. -++..++.|+.-+.+.+||..++.-..+-.. +.
T Consensus 226 ~D~------~v~~wd~~~~~~~~~~~~~h~~-------~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~ 292 (380)
T 3iz6_a 226 CDT------TVRLWDLRITSRAVRTYHGHEG-------DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD 292 (380)
T ss_dssp TTS------CEEEEETTTTCCCCEEECCCSS-------CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCS
T ss_pred CCC------eEEEEECCCCCcceEEECCcCC-------CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccc
Confidence 653 4677887632 1122211111 1112332 3567778888888999999988754332211 11
Q ss_pred cccCCCcceeEE-EEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 319 RADLSNGWGLAF-KACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 319 ~~~~~~~~~~~~-~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
........-.++ ...++++++.|+.++ .|.+||..+
T Consensus 293 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg------~i~vwd~~~ 329 (380)
T 3iz6_a 293 RNDNELPIVTSVAFSISGRLLFAGYSNG------DCYVWDTLL 329 (380)
T ss_dssp SSCCSSCSCSEEEECSSSSEEEEECTTS------CEEEEETTT
T ss_pred ccccccCceEEEEECCCCCEEEEEECCC------CEEEEECCC
Confidence 100000000112 223677777777654 478898766
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=93.45 E-value=1.1 Score=39.15 Aligned_cols=175 Identities=11% Similarity=0.058 Sum_probs=84.1
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE-eCCEEEEEcccccCCeEEEEECCCC-cEeecCCCC
Q 016421 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA-VGSELLVFGRELFDFAIWKYSLVFR-SWMKCEGMN 174 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~-~~~~iy~~Gg~~~~~~~~~yd~~t~-~W~~~~~~~ 174 (390)
+..+|+......+.+|| .+.+-.....++.... ...+. .++.||+... . ++.||+..+ .|.... +
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~-----~~~~~~~~g~l~v~t~----~-l~~~d~~g~~~~~~~~--~ 96 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIE-----CRPSIGKDGTIYFGSD----K-VYAINPDGTEKWRFDT--K 96 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEE-----ECCEETTTTEECCSSC----E-EEEECCCGGGGGGSCC---
T ss_pred CCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcc-----cceEEecCCcEEEecC----c-EEEECCCCcEEEEEEC--C
Confidence 45566654455688899 5443221111221100 11122 2566665322 2 888997422 243221 1
Q ss_pred CCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECC-CCcEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCce
Q 016421 175 HPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDST-TGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTC 252 (390)
Q Consensus 175 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~ 252 (390)
... ....+..++.||+... ...+..||+. ...|+...+.+ . ..+.+.. ++.||+.. . ...
T Consensus 97 ~~~-~~~~~~~~~~l~v~t~-------~~~l~~~d~~g~~~~~~~~~~~--~-~~~~~~~~~g~l~vgt-~------~~~ 158 (330)
T 3hxj_A 97 KAI-VSDFTIFEDILYVTSM-------DGHLYAINTDGTEKWRFKTKKA--I-YATPIVSEDGTIYVGS-N------DNY 158 (330)
T ss_dssp -----CCEEEETTEEEEECT-------TSEEEEECTTSCEEEEEECSSC--C-CSCCEECTTSCEEEEC-T------TSE
T ss_pred CCc-ccCceEECCEEEEEec-------CCEEEEEcCCCCEEEEEcCCCc--e-eeeeEEcCCCEEEEEc-C------CCE
Confidence 111 1122334888887531 2347889987 22476543211 1 1122333 67777742 1 235
Q ss_pred EEEEeCCCC-ceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCC-ceEEc
Q 016421 253 GEEFDLETR-KWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKN-TWDVL 313 (390)
Q Consensus 253 v~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~-~W~~v 313 (390)
++.||+... .|..-..... . ..++. .+|.||+.. +.+++||.... .|..-
T Consensus 159 l~~~d~~g~~~~~~~~~~~~-------~-~~~~~d~~g~l~v~t---~~l~~~d~~g~~~~~~~ 211 (330)
T 3hxj_A 159 LYAINPDGTEKWRFKTNDAI-------T-SAASIGKDGTIYFGS---DKVYAINPDGTEKWNFY 211 (330)
T ss_dssp EEEECTTSCEEEEEECSSCC-------C-SCCEECTTCCEEEES---SSEEEECTTSCEEEEEC
T ss_pred EEEECCCCCEeEEEecCCCc-------e-eeeEEcCCCEEEEEe---CEEEEECCCCcEEEEEc
Confidence 788998722 3654321111 1 11233 467777765 78999994432 47654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.43 E-value=4.1 Score=36.47 Aligned_cols=219 Identities=11% Similarity=0.028 Sum_probs=121.6
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE---eCCEEEEEcccccCCeEEEEECCCCcEeecCC-
Q 016421 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA---VGSELLVFGRELFDFAIWKYSLVFRSWMKCEG- 172 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~---~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~- 172 (390)
+++|+ +.....+..+++.......+..-.. ....++ .++.||+.-- ....++++++.......+..
T Consensus 44 ~~~ll-~~~~~~I~~i~~~g~~~~~~~~~~~-------~~~~l~~d~~~~~ly~~D~--~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 44 EPVLL-FANRIDIRQVLPHRSEYTLLLNNLE-------NAIALDFHHRRELVFWSDV--TLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp CCEEE-EECBSCEEEECTTSCCEEEEECSCS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECS
T ss_pred CceeE-eecccceEEEeCCCCeeEEeecCCC-------ceEEEEEeccccEEEEEec--cCCceEEEecCCCCceEEEeC
Confidence 34443 4455678888888766654422111 112233 2578887642 24578899988765444322
Q ss_pred -CCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC--CCCCCCcCceEEEE--CCEEEEEecccC
Q 016421 173 -MNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP--SMHSPRRLCSGFFM--DGKFYVIGGMSS 245 (390)
Q Consensus 173 -~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~ 245 (390)
+..+ .++++ .++.||+.-.. ...++++++....-+.+. .+..| ...++- ++.||+.-...
T Consensus 114 ~~~~p---~glavd~~~g~ly~~d~~------~~~I~~~~~dG~~~~~l~~~~l~~P---~~iavdp~~g~ly~td~~~- 180 (349)
T 3v64_C 114 GLESP---GGLAVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN- 180 (349)
T ss_dssp SCSCC---CEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECTTCSCE---EEEEEETTTTEEEEEECSS-
T ss_pred CCCCc---cEEEEecCCCeEEEEcCC------CCeEEEEcCCCCceEEEEeCCCCCc---ceEEEecCcCeEEEeccCC-
Confidence 2222 23333 47899998542 346889998765433331 22222 223333 68999974211
Q ss_pred CCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE--ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCC
Q 016421 246 PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV--VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLS 323 (390)
Q Consensus 246 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~ 323 (390)
...|+++++....-+.+..-.. .....+++ .+++||+.....+.|+++|++...=..+...... .
T Consensus 181 ----~~~I~r~~~dG~~~~~~~~~~~------~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~-~-- 247 (349)
T 3v64_C 181 ----TPRIEASSMDGSGRRIIADTHL------FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-H-- 247 (349)
T ss_dssp ----SCEEEEEETTSCSCEESCCSSC------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-S--
T ss_pred ----CCEEEEEeCCCCCcEEEEECCC------CCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCC-C--
Confidence 2568899987654444322111 01113444 3789999998889999999876543333221111 0
Q ss_pred CcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 324 NGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 324 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
-.++++.++.||+.....+ .|..++..+
T Consensus 248 ---P~giav~~~~ly~td~~~~------~V~~~~~~~ 275 (349)
T 3v64_C 248 ---PFAITVFEDSLYWTDWHTK------SINSANKFT 275 (349)
T ss_dssp ---EEEEEEETTEEEEEETTTT------EEEEEETTT
T ss_pred ---ceEEEEECCEEEEecCCCC------eEEEEEccC
Confidence 1345557899999875332 466666443
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=4.5 Score=42.90 Aligned_cols=69 Identities=6% Similarity=0.018 Sum_probs=40.7
Q ss_pred CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEc
Q 016421 234 DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVL 313 (390)
Q Consensus 234 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v 313 (390)
+++..++|+.++ .+..||..+.+......... ..-......-+|+.++.++..+.+.+||..+++...+
T Consensus 972 ~g~~l~~g~~~g------~i~i~d~~~~~~~~~~~~h~-----~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~ 1040 (1249)
T 3sfz_A 972 HLEYVAFGDEDG------AIKIIELPNNRVFSSGVGHK-----KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL 1040 (1249)
T ss_dssp TSSEEEEEETTS------CCEEEETTTTSCEEECCCCS-----SCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECC
T ss_pred CCCEEEEEcCCC------CEEEEEcCCCceeeecccCC-----CceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEE
Confidence 556666665432 46778888765433211111 1111122334677777788888999999998876643
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=93.07 E-value=5.7 Score=38.74 Aligned_cols=143 Identities=13% Similarity=0.017 Sum_probs=82.3
Q ss_pred CeEEEEECC-CC---cEeecCCCCCCCcceeee-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCC----
Q 016421 155 FAIWKYSLV-FR---SWMKCEGMNHPRCLFGSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPR---- 225 (390)
Q Consensus 155 ~~~~~yd~~-t~---~W~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r---- 225 (390)
..++++|.. ++ ....+..-. .......+ .-++++|+.+..++ ...++.+|+.++.++.+.+.....
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~-~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~p~ 291 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGP-EEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAGPL 291 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEET-TBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSCCC
T ss_pred cEEEEEEECCCCcccccEEeCCCC-CceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccccCcc
Confidence 579999988 56 343332211 11111222 22677777765432 246999999899998875432211
Q ss_pred c---CceEEEE-CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEE-EEECCEEEEEecC---C
Q 016421 226 R---LCSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLV-AVVDNQLYAVEYL---T 297 (390)
Q Consensus 226 ~---~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~g~l~v~gg~---~ 297 (390)
. ....+.. ++++++.+.. + ...++.+|..++....+...... ...+ ..-++.+++..+. .
T Consensus 292 w~~~~~~~~~~~~~~~~~~~~~-~----~~~l~~~d~~~~~~~~l~~~~~~-------~~~~~s~~~~~~~~~~~~~~~~ 359 (662)
T 3azo_A 292 WTPGMRWFAPLANGLIAVVHGK-G----AAVLGILDPESGELVDAAGPWTE-------WAATLTVSGTRAVGVAASPRTA 359 (662)
T ss_dssp CSTTCCSEEECTTSCEEEEEBS-S----SCEEEEEETTTTEEEECCSSCCE-------EEEEEEEETTEEEEEEEETTEE
T ss_pred ccccCceEeEeCCCEEEEEEEc-C----ccEEEEEECCCCcEEEecCCCCe-------EEEEEecCCCEEEEEEcCCCCC
Confidence 1 1123333 6787777654 2 34678889988887766432110 0123 3446666666543 2
Q ss_pred CeEEEEeCCCCceEEcc
Q 016421 298 NMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 298 ~~v~~yd~~~~~W~~v~ 314 (390)
..++.+|..+++...+.
T Consensus 360 ~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 360 YEVVELDTVTGRARTIG 376 (662)
T ss_dssp EEEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCCceEEee
Confidence 47888899888887764
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=92.79 E-value=5.1 Score=40.08 Aligned_cols=149 Identities=10% Similarity=0.029 Sum_probs=81.2
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC-
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS- 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~- 220 (390)
++.|++.. ..-+++||+.+.++...... ....-.....-++.|++.. ...+.+||+.+++.+....
T Consensus 73 ~g~lWigT----~~Gl~~yd~~~~~f~~~~~~-~~~~i~~i~~~~g~lWigt--------~~Gl~~~~~~~~~~~~~~~~ 139 (758)
T 3ott_A 73 NTYLYMGT----DNGILVYNYRADRYEQPETD-FPTDVRTMALQGDTLWLGA--------LNGLYTYQLQSRKLTSFDTR 139 (758)
T ss_dssp TTEEEEEE----TTEEEEEETTTTEECCCSCC-CCSCEEEEEEETTEEEEEE--------TTEEEEEETTTCCEEEECHH
T ss_pred CCcEEEEe----CCCeEEEeCCCCEEECcccC-CCceEEEEEecCCcEEEEc--------CCcceeEeCCCCeEEEeccC
Confidence 56677643 23578999999887652111 1111112233477777742 1247899999988876521
Q ss_pred ---CCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-C-CEEEEE
Q 016421 221 ---MHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-D-NQLYAV 293 (390)
Q Consensus 221 ---~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~-g~l~v~ 293 (390)
++.. ....... +|.|++.. ...+.+||+.++++..+...... .........+..- + +.|++.
T Consensus 140 ~~~l~~~--~i~~i~~d~~g~lWigt--------~~Gl~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~d~~~~~lWig 208 (758)
T 3ott_A 140 RNGLPNN--TIYSIIRTKDNQIYVGT--------YNGLCRYIPSNGKFEGIPLPVHS-SQSNLFVNSLLEDTTRQCVWIG 208 (758)
T ss_dssp HHCCSCS--CEEEEEECTTCCEEEEE--------TTEEEEEETTTTEEEEECCCCCT-TCSSCCEEEEEEETTTTEEEEE
T ss_pred CCCcCCC--eEEEEEEcCCCCEEEEe--------CCCHhhCccCCCceEEecCCCcc-ccccceeEEEEEECCCCEEEEE
Confidence 2211 1122222 57777732 12477899999888765321110 0000001122222 2 457764
Q ss_pred ecCCCeEEEEeCCCCceEEccCC
Q 016421 294 EYLTNMVKKYDKLKNTWDVLGRL 316 (390)
Q Consensus 294 gg~~~~v~~yd~~~~~W~~v~~~ 316 (390)
. .+.+..||+.++++.....+
T Consensus 209 t--~~Gl~~~~~~~~~~~~~~~l 229 (758)
T 3ott_A 209 T--EGYLFQYFPSTGQIKQTEAF 229 (758)
T ss_dssp E--EEEEEEEETTTTEEEEEEEE
T ss_pred E--CCCCeEEcCCCCeEEeccCC
Confidence 3 24689999999988765443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=1.9 Score=41.64 Aligned_cols=245 Identities=11% Similarity=-0.031 Sum_probs=113.7
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE-----eCCEEEEEcccccCCeEEEEECCCCcEee-cC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA-----VGSELLVFGRELFDFAIWKYSLVFRSWMK-CE 171 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~-----~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~-~~ 171 (390)
..+|+.+....+..+|+...+-..+..++..... ....+. -+..+|+..- ..+.+.++|..+.+-.. ++
T Consensus 209 r~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P---~~ia~s~~~~pDGk~l~v~n~--~~~~v~ViD~~t~~~~~~i~ 283 (567)
T 1qks_A 209 RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA---RSIETSKMEGWEDKYAIAGAY--WPPQYVIMDGETLEPKKIQS 283 (567)
T ss_dssp CEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE---EEEEECCSTTCTTTEEEEEEE--ETTEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCC---ceeEEccccCCCCCEEEEEEc--cCCeEEEEECCCCcEEEEEe
Confidence 5566665556788888851111222222221111 011233 1345666542 34678889987765422 22
Q ss_pred CC----------CCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE-ECCEEEEE
Q 016421 172 GM----------NHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF-MDGKFYVI 240 (390)
Q Consensus 172 ~~----------~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~ 240 (390)
.. |.+|........++..+++--. ....+++.|..+.....+..++..+..+.... -+|+.+++
T Consensus 284 ~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~-----~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~v 358 (567)
T 1qks_A 284 TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK-----ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFIT 358 (567)
T ss_dssp CCEECTTTCCEESCCCEEEEEECSSSSEEEEEET-----TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEE
T ss_pred ccccccccccccCCCceEEEEEcCCCCEEEEEec-----CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEE
Confidence 11 1222222122222222332111 13457888887665544444444444444443 35554333
Q ss_pred ecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEec-CCCeEEEEeCCCC-----ceEEc
Q 016421 241 GGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEY-LTNMVKKYDKLKN-----TWDVL 313 (390)
Q Consensus 241 GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg-~~~~v~~yd~~~~-----~W~~v 313 (390)
... ..+.+.++|..+++=...-+.. ....++..+.....- ++.+|+.+. ..+.|.++|..+. .|+.+
T Consensus 359 a~~-----~sn~V~ViD~~t~kl~~~i~vg-g~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv 432 (567)
T 1qks_A 359 AAN-----ARNKLVVIDTKEGKLVAIEDTG-GQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKIL 432 (567)
T ss_dssp EEG-----GGTEEEEEETTTTEEEEEEECS-SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred EeC-----CCCeEEEEECCCCcEEEEEecc-CcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEE
Confidence 322 2456888999988643222220 111111112222222 367887763 3468999987763 39888
Q ss_pred cCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 314 GRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..++...... ......--+.++|+---.........+|.+||..+
T Consensus 433 ~~i~~~g~g~--~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 433 DSFPALGGGS--LFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp EEEECSCSCC--CCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred EEEecCCCCC--EEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence 7665432110 11111112347887552221101123577888765
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=92.46 E-value=0.047 Score=53.21 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=31.6
Q ss_pred CCChHHHHHHHhhhc-cccchhhhHhhcHHHHHHh
Q 016421 48 PGLVDDVALNCLAFA-CTSDYASLLFINKRFHKLI 81 (390)
Q Consensus 48 ~~LP~dl~~~iL~rl-p~~~l~~~~~V~k~w~~l~ 81 (390)
..||||++..||.+| |.+...++..|||+|+.+.
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence 479999999999999 8999999999999999874
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=8.6 Score=37.07 Aligned_cols=246 Identities=11% Similarity=-0.041 Sum_probs=115.9
Q ss_pred ccEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccCCeEEEEECC--CCcEeecCC
Q 016421 97 EHWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFDFAIWKYSLV--FRSWMKCEG 172 (390)
Q Consensus 97 ~~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~--t~~W~~~~~ 172 (390)
.+.+|+.. +...+..+|+.+.+-.. .++.....+ ...+.. +..+|+.+. ...+.+||+. +.+- +..
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~--~i~~g~~p~---~v~~SpDGr~lyv~~~---dg~V~viD~~~~t~~~--v~~ 235 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKT--VLDTGYAVH---ISRLSASGRYLFVIGR---DGKVNMIDLWMKEPTT--VAE 235 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEE--EEECSSCEE---EEEECTTSCEEEEEET---TSEEEEEETTSSSCCE--EEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEE--EEeCCCCcc---ceEECCCCCEEEEEcC---CCeEEEEECCCCCCcE--eEE
Confidence 34566654 46788899998775432 122211111 112222 456777653 4589999985 4432 222
Q ss_pred CCCCCcceeeeee------CCEEEEEeccCCCCCccceEEEEECCCCcEEE-cC--CCC--------CCCcCceEEEECC
Q 016421 173 MNHPRCLFGSGSL------GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM-LP--SMH--------SPRRLCSGFFMDG 235 (390)
Q Consensus 173 ~~~~r~~~~~~~~------~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~--~~~--------~~r~~~~~~~~~~ 235 (390)
++.......++.- +..+|+.... ...+.++|..+.+=.. ++ .++ .+|...-.+..++
T Consensus 236 i~~G~~P~~ia~s~~~~pDGk~l~v~n~~------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~ 309 (567)
T 1qks_A 236 IKIGSEARSIETSKMEGWEDKYAIAGAYW------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 309 (567)
T ss_dssp EECCSEEEEEEECCSTTCTTTEEEEEEEE------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred EecCCCCceeEEccccCCCCCEEEEEEcc------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC
Confidence 2222222233332 3467776432 3567889977765322 11 111 1221111111233
Q ss_pred EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEE-EEECCE-EEEEecCCCeEEEEeCCCCceEEc
Q 016421 236 KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLV-AVVDNQ-LYAVEYLTNMVKKYDKLKNTWDVL 313 (390)
Q Consensus 236 ~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~g~-l~v~gg~~~~v~~yd~~~~~W~~v 313 (390)
..+++.-. ....+...|..+.....+..++... ..+.. ..-+|+ +|+.....+.|.++|..+++=..
T Consensus 310 ~~~vv~~~-----~~g~v~~vd~~~~~~~~v~~i~~~~-----~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~- 378 (567)
T 1qks_A 310 PEFIVNVK-----ETGKILLVDYTDLNNLKTTEISAER-----FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA- 378 (567)
T ss_dssp SEEEEEET-----TTTEEEEEETTCSSEEEEEEEECCS-----SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE-
T ss_pred CEEEEEec-----CCCeEEEEecCCCccceeeeeeccc-----cccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEE-
Confidence 33333211 1345777787776554443333211 11112 223444 55555567899999999885322
Q ss_pred cCCCc-cccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccC
Q 016421 314 GRLPV-RADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQ 376 (390)
Q Consensus 314 ~~~~~-~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p 376 (390)
..+. ....+.+.|..+..- ++.+|+.+-... ..|-++|.+++.. ....|+++..++
T Consensus 379 -~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~-----~~Vsvid~~~~~~-~~~~~kvv~~i~ 436 (567)
T 1qks_A 379 -IEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD-----DSVALIGTDPEGH-PDNAWKILDSFP 436 (567)
T ss_dssp -EEECSSSSBCCTTCEEEEETTTEEEEEEEBSSS-----SEEEEEECCTTTC-TTTBTSEEEEEE
T ss_pred -EEeccCcCCCCccceeeECCCCCcEEEeCCCCC-----CeEEEecCCCCCC-ccccCEEEEEEe
Confidence 2222 111111223333222 367777663211 1466777665211 123488877654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=92.13 E-value=0.68 Score=40.85 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=58.0
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CC-EEEEEecccCCCccCceEEEEeCCCCce
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DG-KFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
++.+|+.++.+ ..+.++|+.+++....-+.+........+.. ++ .+|+.+.. ...+..||+.+.+-
T Consensus 10 ~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t~~~ 77 (349)
T 1jmx_B 10 GHEYMIVTNYP------NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDTCKN 77 (349)
T ss_dssp TCEEEEEEETT------TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTTTEE
T ss_pred CCEEEEEeCCC------CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC------CCcEEEEeCCCCcE
Confidence 67888887643 4689999998875432222221012233332 45 57776532 24688899988765
Q ss_pred EEccCCCCCCCCcCCCCCEEEE-ECC-EEEEEecC-----------CCeEEEEeCCCCc
Q 016421 264 RKIEGMYPNVNRAAQAPPLVAV-VDN-QLYAVEYL-----------TNMVKKYDKLKNT 309 (390)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~-~~g-~l~v~gg~-----------~~~v~~yd~~~~~ 309 (390)
...-..+............++. -+| .+|+.+.. .+.+.+||.++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 4322221100000000112332 245 45555422 4789999988743
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=92.12 E-value=5.8 Score=34.88 Aligned_cols=189 Identities=12% Similarity=0.019 Sum_probs=93.8
Q ss_pred cEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCC
Q 016421 98 HWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHP 176 (390)
Q Consensus 98 ~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~ 176 (390)
..+|... ....++.||+.+.+...+. .+... .......++.+++.. ...+++||+.+++...+...+..
T Consensus 61 ~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v-----~~i~~~~dg~l~v~~----~~gl~~~d~~~g~~~~~~~~~~~ 130 (326)
T 2ghs_A 61 GTAWWFNILERELHELHLASGRKTVHA-LPFMG-----SALAKISDSKQLIAS----DDGLFLRDTATGVLTLHAELESD 130 (326)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCE-----EEEEEEETTEEEEEE----TTEEEEEETTTCCEEEEECSSTT
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEE-CCCcc-----eEEEEeCCCeEEEEE----CCCEEEEECCCCcEEEEeeCCCC
Confidence 4555554 3567888999877554332 12110 011233467777754 23589999999888766443211
Q ss_pred --Ccce-ee-eeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CC-EEEEEecccCCCccC
Q 016421 177 --RCLF-GS-GSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DG-KFYVIGGMSSPTVSL 250 (390)
Q Consensus 177 --r~~~-~~-~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~ 250 (390)
.... .. ..-++++|+.............+++|| +++.+.+.. ........+.. ++ .+|+.... .
T Consensus 131 ~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~~i~~s~dg~~lyv~~~~------~ 200 (326)
T 2ghs_A 131 LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPNSICFSPDGTTGYFVDTK------V 200 (326)
T ss_dssp CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEEEEEECTTSCEEEEEETT------T
T ss_pred CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccCCeEEcCCCCEEEEEECC------C
Confidence 1111 12 222567776432111111245688888 566554321 00011122222 45 57776322 2
Q ss_pred ceEEEEeCC--CC-c------eEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEc
Q 016421 251 TCGEEFDLE--TR-K------WRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVL 313 (390)
Q Consensus 251 ~~v~~yd~~--~~-~------W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v 313 (390)
..+++||.. ++ . +..+..... .+ ..++. -+|.+|+.....+.|.+||+....-..+
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~----~p---~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i 266 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKG----GM---DGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARY 266 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSS----EE---EEEEECTTSCEEEEEETTTEEEEECTTCCEEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCC----CC---CeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEE
Confidence 468888875 44 2 222111000 00 01222 3578888764457899999954433333
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.86 E-value=7.4 Score=35.49 Aligned_cols=152 Identities=8% Similarity=0.003 Sum_probs=79.3
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCce
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
++.+++.|+.+ ..+.+||..+++-...-..+........+.. ++++.+.|+.++ .+..||+.+.+.
T Consensus 181 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~~~~~ 248 (437)
T 3gre_A 181 EKSLLVALTNL------SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG------IIDIWDIRFNVL 248 (437)
T ss_dssp SCEEEEEEETT------SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS------CEEEEETTTTEE
T ss_pred CCCEEEEEeCC------CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC------eEEEEEcCCccE
Confidence 46777777654 3588999988764322111111112223333 667777776543 477899988654
Q ss_pred EEccCCCCCCCCcCCCCCEEEE-----ECCEEEEEecCCCeEEEEeCCCCceEEc-cCC---Cc----cc----------
Q 016421 264 RKIEGMYPNVNRAAQAPPLVAV-----VDNQLYAVEYLTNMVKKYDKLKNTWDVL-GRL---PV----RA---------- 320 (390)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~-----~~g~l~v~gg~~~~v~~yd~~~~~W~~v-~~~---~~----~~---------- 320 (390)
...-...... . ...++. .++.+++.|+..+.|.+||..+.+-... ... +. .+
T Consensus 249 ~~~~~~~~~~---~--v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (437)
T 3gre_A 249 IRSWSFGDHA---P--ITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNF 323 (437)
T ss_dssp EEEEBCTTCE---E--EEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCC
T ss_pred EEEEecCCCC---c--eEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccccee
Confidence 3321111100 0 001111 1355666777777899999987653221 100 00 00
Q ss_pred cC--CCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 321 DL--SNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 321 ~~--~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.. +...-.+++..++++++.||.++ .|.+||..+
T Consensus 324 ~~~~~~~~v~~l~~~~~~~l~s~~~d~------~i~~wd~~~ 359 (437)
T 3gre_A 324 CGIRSLNALSTISVSNDKILLTDEATS------SIVMFSLNE 359 (437)
T ss_dssp CCCCSGGGGCCEEEETTEEEEEEGGGT------EEEEEETTC
T ss_pred cccccCCceEEEEECCceEEEecCCCC------eEEEEECCC
Confidence 00 00111233344788888888764 588999877
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=91.76 E-value=4.5 Score=35.93 Aligned_cols=128 Identities=14% Similarity=0.075 Sum_probs=63.3
Q ss_pred CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEecC-----CCeEEEEeCCC
Q 016421 234 DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEYL-----TNMVKKYDKLK 307 (390)
Q Consensus 234 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg~-----~~~v~~yd~~~ 307 (390)
+|++|+.......+. ..++.++ +.+-...+.........-.....+++- +|+||+++.. ...|.+||+.+
T Consensus 27 ~g~~~v~~~~~~~~~--~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t 102 (343)
T 2qe8_A 27 DGRLFLSLHQFYQPE--MQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN 102 (343)
T ss_dssp TSCEEEEECGGGCCS--CSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCc--eEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC
Confidence 789998853221111 4566677 444333322111100001111223332 4899999743 47899999998
Q ss_pred CceEEccCCCccccCCCcceeEEEEe--CCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016421 308 NTWDVLGRLPVRADLSNGWGLAFKAC--GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 308 ~~W~~v~~~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
++-...-.++.........-..+++. ++.+|+.....+ ....|.+||+.++ ..|..+.
T Consensus 103 g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~---~~~~i~v~d~~~g-----~~~r~~~ 162 (343)
T 2qe8_A 103 NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD---DKAALIRVDLQTG-----LAARVLQ 162 (343)
T ss_dssp TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG---GGCEEEEEETTTC-----CEEEECT
T ss_pred CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC---CCCeEEEEECCCC-----CEEEEec
Confidence 87443222321110000010223333 578998853110 1235889998763 4577663
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=91.73 E-value=6 Score=34.23 Aligned_cols=113 Identities=17% Similarity=0.077 Sum_probs=54.5
Q ss_pred EEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCC-EEEEEcccccCCeEEEEECCCCcEeecCCCCCCC-
Q 016421 100 VYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGS-ELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR- 177 (390)
Q Consensus 100 l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r- 177 (390)
++.......+..+|+.+.+....-.++.... ......+..++ .+|+.+. ....++++|+.+.+-...-..+.+-
T Consensus 4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGP--TPMVPMVAPGGRIAYATVN--KSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCTT--CCCCEEECTTSSEEEEEET--TTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEEcCCCCC--CccceEEcCCCCEEEEEeC--CCCeEEEEECCCCCeEeeEEcCCccc
Confidence 3343456778889988765432211222000 00011233344 6777654 2457999999887653321111100
Q ss_pred ---cceeeeee--CCEEEEEeccC---CCCC--ccceEEEEECCCCcEE
Q 016421 178 ---CLFGSGSL--GSIAIIAGGSD---KNGH--VLKSAELYDSTTGRWE 216 (390)
Q Consensus 178 ---~~~~~~~~--~~~lyv~GG~~---~~~~--~~~~~~~yd~~t~~W~ 216 (390)
....++.- +..+|+..... .... ....+.+||..+++..
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 128 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR 128 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE
Confidence 11122222 34777764210 0000 1367899999887654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=91.73 E-value=4.4 Score=35.40 Aligned_cols=142 Identities=13% Similarity=0.102 Sum_probs=70.6
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCce
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
++..++.|+.+ ..+.+||..+++-... +.........+.. ++.+.+.|+.++ .+..||+....-
T Consensus 76 dg~~l~s~s~D------~~v~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~D~------~i~vwd~~~~~~ 141 (319)
T 3frx_A 76 DGAYALSASWD------KTLRLWDVATGETYQR--FVGHKSDVMSVDIDKKASMIISGSRDK------TIKVWTIKGQCL 141 (319)
T ss_dssp TSSEEEEEETT------SEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSCEEEEEETTS------CEEEEETTSCEE
T ss_pred CCCEEEEEeCC------CEEEEEECCCCCeeEE--EccCCCcEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCeE
Confidence 55666666654 3588999988764221 1111111222222 566666666543 366688765443
Q ss_pred EEccCCCCCCCCcCCCCCEEEE-------ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCC
Q 016421 264 RKIEGMYPNVNRAAQAPPLVAV-------VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGN 335 (390)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~-------~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~ 335 (390)
..+...... ...+.. .++.+++.++.-+.+..||..+.+-.. .+.... ..-.+++. -++
T Consensus 142 ~~~~~h~~~-------v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~h~----~~v~~~~~sp~g 208 (319)
T 3frx_A 142 ATLLGHNDW-------VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA--DFIGHN----SNINTLTASPDG 208 (319)
T ss_dssp EEECCCSSC-------EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE--EECCCC----SCEEEEEECTTS
T ss_pred EEEeccCCc-------EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe--eecCCC----CcEEEEEEcCCC
Confidence 333211110 001111 134456667777889999987754332 111111 01112222 256
Q ss_pred EEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 336 ELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 336 ~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
++++.|+.++ .|.+||..+
T Consensus 209 ~~l~s~~~dg------~i~iwd~~~ 227 (319)
T 3frx_A 209 TLIASAGKDG------EIMLWNLAA 227 (319)
T ss_dssp SEEEEEETTC------EEEEEETTT
T ss_pred CEEEEEeCCC------eEEEEECCC
Confidence 6777777653 466777765
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=91.53 E-value=2.1 Score=42.67 Aligned_cols=172 Identities=11% Similarity=0.015 Sum_probs=87.9
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCC----cEEEcCCCCCCC-cC
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTG----RWEMLPSMHSPR-RL 227 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~----~W~~~~~~~~~r-~~ 227 (390)
..+.+++..+.....+... .....++++ .++.||+.-.. ...+.++++.+. .-..+ +.... ..
T Consensus 386 ~~I~~id~~~~~~~~~~~~--~~~p~gla~d~~~~~Ly~sD~~------~~~I~~~~~~g~~~~~~~~~~--i~~~~~~P 455 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTV--ISRDIQAP 455 (699)
T ss_dssp TC-CEECTTSCCEECCSCC--CTTCCCCEEETTTTEEEECCTT------TTSBEEEESCCCCC-CCCCCB--CCSCC--C
T ss_pred cceEEEeCCCCcceeeecc--CcceEEEccccccCeEEEEecC------CCeEEEEecCCCCCCcceEEE--EeCCCCCc
Confidence 3566777776666544322 122233333 26789987432 345788888751 11111 11111 11
Q ss_pred ceEEE--ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE--ECCEEEEEecC-CCeEEE
Q 016421 228 CSGFF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV--VDNQLYAVEYL-TNMVKK 302 (390)
Q Consensus 228 ~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~g~l~v~gg~-~~~v~~ 302 (390)
.+.++ .+++||+.-. ....|.++|+....-..+...... ....+++ .++.||+.... ...|++
T Consensus 456 ~glavD~~~g~LY~tD~------~~~~I~v~d~dg~~~~~l~~~~~~------~P~giavDp~~g~ly~td~~~~~~I~~ 523 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFREQGS------KPRAIVVDPVHGFMYWTDWGTPAKIKK 523 (699)
T ss_dssp CCEECCCSSSBCEECCT------TTSCEEEEBSSSCCEEEECCCSSC------CCCCEECCSSSSCCEECCCSSSCCEEB
T ss_pred ceEEEEeeCCcEEEEec------cCCeEEEEecCCCceEEEEeCCCC------CcceEEEccCCCcEEEcccCCCCeEEE
Confidence 22332 4678999621 234678898877654444321110 0112443 36889988743 378999
Q ss_pred EeCCCCceEEcc--CCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 303 YDKLKNTWDVLG--RLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 303 yd~~~~~W~~v~--~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++....-..+. .+..+ .|.++-..+++||+.-... ..|++++++.
T Consensus 524 ~~~dG~~~~~l~~~~l~~P------nGlavd~~~~~LY~aD~~~------~~I~~~d~dG 571 (699)
T 1n7d_A 524 GGLNGVDIYSLVTENIQWP------NGITLDLLSGRLYWVDSKL------HSISSIDVNG 571 (699)
T ss_dssp CCSSSCCCCEESCSSCSSC------CCEEECTTTCCEEEEETTT------TEEEEECSSS
T ss_pred EeCCCCCeeEEEeCCCCCc------cEEEEeccCCEEEEEecCC------CeEEEEccCC
Confidence 988765433332 12111 1233222368899887533 2577777754
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.42 E-value=4.3 Score=35.65 Aligned_cols=141 Identities=11% Similarity=0.036 Sum_probs=74.3
Q ss_pred CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceE
Q 016421 187 SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWR 264 (390)
Q Consensus 187 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 264 (390)
+..++.|+.++ .+.+||..++.......+.........+.. +++..+.|+.+ ..+..||..+.+..
T Consensus 54 g~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~ 121 (368)
T 3mmy_A 54 GNFLIAGSWAN------DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD------KTAKMWDLSSNQAI 121 (368)
T ss_dssp SEEEEEEETTS------EEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEE
T ss_pred ceEEEEECCCC------cEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC------CcEEEEEcCCCCce
Confidence 47777777543 478888876332221111111112222222 56666666543 35778999988765
Q ss_pred EccCCCCCCCCcCCCCCEEEE---ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEc
Q 016421 265 KIEGMYPNVNRAAQAPPLVAV---VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVG 341 (390)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~---~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~G 341 (390)
.+...... ...+.. .++.+++.++..+.+.+||..+.+-...-..+. ...++....+.+++.+
T Consensus 122 ~~~~~~~~-------v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 187 (368)
T 3mmy_A 122 QIAQHDAP-------VKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-------RCYCADVIYPMAVVAT 187 (368)
T ss_dssp EEEECSSC-------EEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-------CEEEEEEETTEEEEEE
T ss_pred eeccccCc-------eEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-------CceEEEecCCeeEEEe
Confidence 54321111 112222 367788888888899999988765222111111 1133334455555544
Q ss_pred CCCCCCCCeEEEeeecCCC
Q 016421 342 GQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 342 G~~~~~~~~~~i~~y~~~~ 360 (390)
+.. .+.+|+...
T Consensus 188 ~~~-------~i~~~~~~~ 199 (368)
T 3mmy_A 188 AER-------GLIVYQLEN 199 (368)
T ss_dssp GGG-------CEEEEECSS
T ss_pred CCC-------cEEEEEecc
Confidence 422 366787765
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.32 E-value=7.6 Score=38.25 Aligned_cols=146 Identities=14% Similarity=0.074 Sum_probs=73.3
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcc-eeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCL-FGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.+++.|+. +..+.+||..+++-... +...... .+++. -++..++.|+.++ .+.++|.....-..+.
T Consensus 441 ~g~~l~sgs~--Dg~v~vwd~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~D~------~i~iwd~~~~~~~~~~ 510 (694)
T 3dm0_A 441 DGQFALSGSW--DGELRLWDLAAGVSTRR--FVGHTKDVLSVAFSLDNRQIVSASRDR------TIKLWNTLGECKYTIS 510 (694)
T ss_dssp TSSEEEEEET--TSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSSCEEEEETTS------CEEEECTTSCEEEEEC
T ss_pred CCCEEEEEeC--CCcEEEEECCCCcceeE--EeCCCCCEEEEEEeCCCCEEEEEeCCC------EEEEEECCCCcceeec
Confidence 5566666653 45788999887654221 1111111 11221 2455666666543 4777887554322222
Q ss_pred CCCC-CCcCceEEEE--CC--EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEE
Q 016421 220 SMHS-PRRLCSGFFM--DG--KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAV 293 (390)
Q Consensus 220 ~~~~-~r~~~~~~~~--~~--~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~ 293 (390)
.... .+....++.. ++ .+++.|+.+ ..+..||+.+.+-...- ... ......++. -++++++.
T Consensus 511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~vwd~~~~~~~~~~--~~h----~~~v~~v~~spdg~~l~s 578 (694)
T 3dm0_A 511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWD------KTVKVWNLSNCKLRSTL--AGH----TGYVSTVAVSPDGSLCAS 578 (694)
T ss_dssp SSTTSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTCCEEEEE--CCC----SSCEEEEEECTTSSEEEE
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEEEeCC------CeEEEEECCCCcEEEEE--cCC----CCCEEEEEEeCCCCEEEE
Confidence 2111 2222233333 22 345555543 24777898876543221 110 000111222 25777888
Q ss_pred ecCCCeEEEEeCCCCc
Q 016421 294 EYLTNMVKKYDKLKNT 309 (390)
Q Consensus 294 gg~~~~v~~yd~~~~~ 309 (390)
|+.-+.|.+||..+.+
T Consensus 579 g~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 579 GGKDGVVLLWDLAEGK 594 (694)
T ss_dssp EETTSBCEEEETTTTE
T ss_pred EeCCCeEEEEECCCCc
Confidence 8888899999998775
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.12 E-value=12 Score=36.68 Aligned_cols=146 Identities=13% Similarity=0.111 Sum_probs=70.3
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCC-CCCCCcceeeeee--C--CEEEEEeccCCCCCccceEEEEECCCCcEE
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEG-MNHPRCLFGSGSL--G--SIAIIAGGSDKNGHVLKSAELYDSTTGRWE 216 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~-~~~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~ 216 (390)
++..++.|+. +..+.+||.....-..+.. ....+....++.+ + ...++.|+.+ ..+.+||..++.-.
T Consensus 483 ~~~~l~s~s~--D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~vwd~~~~~~~ 554 (694)
T 3dm0_A 483 DNRQIVSASR--DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD------KTVKVWNLSNCKLR 554 (694)
T ss_dssp TSSCEEEEET--TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTCCEE
T ss_pred CCCEEEEEeC--CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC------CeEEEEECCCCcEE
Confidence 4444555542 3567788865543222221 1111222222222 2 2355566544 34888998877643
Q ss_pred EcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEe
Q 016421 217 MLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVE 294 (390)
Q Consensus 217 ~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~g 294 (390)
.. +.........+.. ++++++.|+.++ .+..||+.+.+-. ..+.... ....++...+..++.+
T Consensus 555 ~~--~~~h~~~v~~v~~spdg~~l~sg~~Dg------~i~iwd~~~~~~~--~~~~~~~-----~v~~~~~sp~~~~l~~ 619 (694)
T 3dm0_A 555 ST--LAGHTGYVSTVAVSPDGSLCASGGKDG------VVLLWDLAEGKKL--YSLEANS-----VIHALCFSPNRYWLCA 619 (694)
T ss_dssp EE--ECCCSSCEEEEEECTTSSEEEEEETTS------BCEEEETTTTEEE--ECCBCSS-----CEEEEEECSSSSEEEE
T ss_pred EE--EcCCCCCEEEEEEeCCCCEEEEEeCCC------eEEEEECCCCceE--EEecCCC-----cEEEEEEcCCCcEEEE
Confidence 32 1111122222332 677777776543 4667888876532 2222110 1112333333334444
Q ss_pred cCCCeEEEEeCCCCce
Q 016421 295 YLTNMVKKYDKLKNTW 310 (390)
Q Consensus 295 g~~~~v~~yd~~~~~W 310 (390)
+..+.|.+||..+++-
T Consensus 620 ~~~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 620 ATEHGIKIWDLESKSI 635 (694)
T ss_dssp EETTEEEEEETTTTEE
T ss_pred EcCCCEEEEECCCCCC
Confidence 4456789999887754
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=91.08 E-value=8.6 Score=34.75 Aligned_cols=106 Identities=12% Similarity=-0.029 Sum_probs=53.8
Q ss_pred cEEEEEeC-CC----eeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEccc-------ccCCeEEEEECCC
Q 016421 98 HWVYLVCD-PR----GWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRE-------LFDFAIWKYSLVF 164 (390)
Q Consensus 98 ~~l~~~~~-~~----~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~-------~~~~~~~~yd~~t 164 (390)
.++|+... .. .+..||+.+.+- +..+|..... ...+.. +..+|+..-. ...+.+.+||+.+
T Consensus 33 ~~~yv~~~~~~~~~~~v~v~D~~t~~~--~~~i~~g~~p----~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 33 RRSYINLPAHHSAIIQQWVLDAGSGSI--LGHVNGGFLP----NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CEEEEeCCcccCCccEEEEEECCCCeE--EEEecCCCCC----CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 45666642 22 567899887653 2333332111 112333 5678876421 1235688999987
Q ss_pred CcEe-ecCCCC-CCC-------cceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEE
Q 016421 165 RSWM-KCEGMN-HPR-------CLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE 216 (390)
Q Consensus 165 ~~W~-~~~~~~-~~r-------~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~ 216 (390)
.+-. .++ ++ ..| .......-+..+|+..-. ..+.+.++| .+++-.
T Consensus 107 ~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~-----~~~~v~viD-~t~~~~ 160 (373)
T 2mad_H 107 FLPIADIE-LPDAPRFDVGPYSWMNANTPNNADLLFFQFA-----AGPAVGLVV-QGGSSD 160 (373)
T ss_pred CcEEEEEE-CCCccccccCCCccceEECCCCCEEEEEecC-----CCCeEEEEE-CCCCEE
Confidence 6532 222 11 111 112222235677776321 135688899 887643
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=91.06 E-value=6.8 Score=33.57 Aligned_cols=185 Identities=8% Similarity=-0.027 Sum_probs=93.0
Q ss_pred ccEEEEEeC-CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEE----cccc-----------cCCeEEEE
Q 016421 97 EHWVYLVCD-PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVF----GREL-----------FDFAIWKY 160 (390)
Q Consensus 97 ~~~l~~~~~-~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~----Gg~~-----------~~~~~~~y 160 (390)
+..+|+... ...+..||+.+.+...+................+..++.+|+. |... ....++.+
T Consensus 79 dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~ 158 (296)
T 3e5z_A 79 QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRL 158 (296)
T ss_dssp TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEE
Confidence 344666543 4678899998777665432211111111111223346778875 3210 13478999
Q ss_pred ECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECC-CCcE---EEcCCCCCCCcCceEEE-EC
Q 016421 161 SLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDST-TGRW---EMLPSMHSPRRLCSGFF-MD 234 (390)
Q Consensus 161 d~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~-t~~W---~~~~~~~~~r~~~~~~~-~~ 234 (390)
|+. ++...+.... ....+++. -++++++.... ...+++||.. +++. ..+-..... ...+.+. -+
T Consensus 159 ~~~-g~~~~~~~~~--~~~~gi~~s~dg~~lv~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~-~p~~i~~d~~ 228 (296)
T 3e5z_A 159 APD-GTLSAPIRDR--VKPNGLAFLPSGNLLVSDTG------DNATHRYCLNARGETEYQGVHFTVEPG-KTDGLRVDAG 228 (296)
T ss_dssp CTT-SCEEEEECCC--SSEEEEEECTTSCEEEEETT------TTEEEEEEECSSSCEEEEEEEECCSSS-CCCSEEEBTT
T ss_pred CCC-CCEEEeecCC--CCCccEEECCCCCEEEEeCC------CCeEEEEEECCCCcCcCCCeEeeCCCC-CCCeEEECCC
Confidence 987 5554432211 11122222 24555544322 2468888876 5555 111111111 1112232 37
Q ss_pred CEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--C-CEEEEEecCCCeEEEEeCCCCc
Q 016421 235 GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--D-NQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 235 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~-g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
|+||+.. ...+.+||+.......+.. +.. ...++.. + +.||+... +.+++|+++++.
T Consensus 229 G~l~v~~--------~~~v~~~~~~g~~~~~~~~-~~~-------~~~~~f~~~d~~~L~v~t~--~~l~~~~~~~~~ 288 (296)
T 3e5z_A 229 GLIWASA--------GDGVHVLTPDGDELGRVLT-PQT-------TSNLCFGGPEGRTLYMTVS--TEFWSIETNVRG 288 (296)
T ss_dssp SCEEEEE--------TTEEEEECTTSCEEEEEEC-SSC-------CCEEEEESTTSCEEEEEET--TEEEEEECSCCB
T ss_pred CCEEEEc--------CCeEEEECCCCCEEEEEEC-CCC-------ceeEEEECCCCCEEEEEcC--CeEEEEEccccc
Confidence 8888875 1357889998655444432 211 1123332 2 35777653 589999998765
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=91.04 E-value=9.1 Score=34.97 Aligned_cols=222 Identities=10% Similarity=-0.006 Sum_probs=119.0
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe---CCEEEEEcccccCCeEEEEECCCC----cEeec
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV---GSELLVFGRELFDFAIWKYSLVFR----SWMKC 170 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~iy~~Gg~~~~~~~~~yd~~t~----~W~~~ 170 (390)
++|+ +.....+..+|+....+..+.+-.. ....+.. ++.||+.-- ....++++++... ....+
T Consensus 84 ~~ll-~~~~~~I~~i~l~~~~~~~~~~~~~-------~~~~l~~d~~~~~lywsD~--~~~~I~~~~~~g~~~~~~~~~~ 153 (400)
T 3p5b_L 84 AYLF-FTNRHEVRKMTLDRSEYTSLIPNLR-------NVVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTV 153 (400)
T ss_dssp CEEE-EEETTEEEEECTTSCSCEEEECSCS-------CEEEEEEETTTTEEEEEET--TTTEEEEEEC------CCCEEE
T ss_pred ceeE-EeccceeEEEccCCcceeEeccccC-------cceEEeeeeccCceEEEec--CCCeEEEEEcccCCCCCcceEE
Confidence 4444 3456788888988776655422111 1122332 578888643 2357888887652 12222
Q ss_pred CCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC--CCCCCCcCceEEE--ECCEEEEEeccc
Q 016421 171 EGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP--SMHSPRRLCSGFF--MDGKFYVIGGMS 244 (390)
Q Consensus 171 ~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~ 244 (390)
... ......++++ .++.||+.-.. ...++++|+....-+.+. .+..| .+.++ .++.||+.--.
T Consensus 154 ~~~-~~~~p~glavD~~~~~lY~~d~~------~~~I~~~~~~g~~~~~l~~~~~~~P---~~iavdp~~g~ly~td~~- 222 (400)
T 3p5b_L 154 ISR-DIQAPDGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG- 222 (400)
T ss_dssp ECS-SCSCEEEEEEETTTTEEEEEETT------TTEEEEECTTTCSEEEEEECSSCCE---EEEEEETTTTEEEEEECS-
T ss_pred EeC-CCCCcccEEEEecCCceEEEECC------CCeEEEEeCCCCceEEEEeCCCCCc---ceEEEecccCeEEEEeCC-
Confidence 110 1111223333 47899998532 346889998876554432 22222 22333 26899997311
Q ss_pred CCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccC
Q 016421 245 SPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADL 322 (390)
Q Consensus 245 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~ 322 (390)
....|+++++....=..+..-.. .....+++- +++||+.+.....|+++|.+...-..+...+....
T Consensus 223 ----~~~~I~~~~~dG~~~~~~~~~~l------~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~- 291 (400)
T 3p5b_L 223 ----TPAKIKKGGLNGVDIYSLVTENI------QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA- 291 (400)
T ss_dssp ----SSCCEEEEETTSCSCEEEECSSC------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTS-
T ss_pred ----CCCEEEEEeCCCCccEEEEECCC------CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCC-
Confidence 12458888887543333321110 011134444 68999999888999999987654444432111111
Q ss_pred CCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 323 SNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 323 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
...++++.+++||+..-..+ .|+.+|+.+
T Consensus 292 ---~P~gl~v~~~~lywtd~~~~------~V~~~~~~~ 320 (400)
T 3p5b_L 292 ---HPFSLAVFEDKVFWTDIINE------AIFSANRLT 320 (400)
T ss_dssp ---SEEEEEEETTEEEEEESSSC------SEEEEESSS
T ss_pred ---CCEEEEEeCCEEEEecCCCC------eEEEEEcCC
Confidence 11456668999999874321 366677555
|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=10 Score=35.43 Aligned_cols=181 Identities=16% Similarity=0.195 Sum_probs=93.4
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeec--CCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc-----
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKC--EGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR----- 214 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~----- 214 (390)
++.+|+|.|. ..|.||..+++.... +-++ . .-++....+++|+|-|. ..+.||+.+++
T Consensus 158 ~~~~yfFkG~----~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG~--------~y~rfd~~~~~v~~gy 222 (460)
T 1qhu_A 158 DEGILFFQGN----RKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQGN--------QFLRFNPVSGEVPPGY 222 (460)
T ss_dssp SSEEEEEETT----EEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEETT--------EEEEECTTTCCCCTTC
T ss_pred CCeEEEEecc----cEEEEecccceeecccCCCCC--c-cchheeeCCceEEEECC--------EEEEEcCccCcccCCC
Confidence 6788888773 679999988765321 2222 2 22444457899999763 36777765543
Q ss_pred -------EEEcCCC------------------CCCCcCceEEE--ECCEEEEEecccCCCccCceEEEEeCCCCceE--E
Q 016421 215 -------WEMLPSM------------------HSPRRLCSGFF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR--K 265 (390)
Q Consensus 215 -------W~~~~~~------------------~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~--~ 265 (390)
|-.++.. ..+....-++. .+|++|++-|. ..+++|...+.+. .
T Consensus 223 Pk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~--------~yWR~~~~~~~~~p~~ 294 (460)
T 1qhu_A 223 PLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGS--------HYWRLDTNRDGWHSWP 294 (460)
T ss_dssp CEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETT--------EEEECTTGGGCCCCEE
T ss_pred CcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCC--------EEEEEecCCCCcCccc
Confidence 2221110 01111222333 46899998553 3455655443221 1
Q ss_pred ccC-CCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCcc--------ccC-CCcceeEEEE-eC
Q 016421 266 IEG-MYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVR--------ADL-SNGWGLAFKA-CG 334 (390)
Q Consensus 266 ~~~-~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~--------~~~-~~~~~~~~~~-~~ 334 (390)
+.. .+.. +...-++...++++|++-| +.+++|+..+ ..+.+..-|.. ... ....-+++.. .+
T Consensus 295 Is~~Wpgl----P~~IDAAf~~~~~~yfFkG--~~yw~f~~~~-g~~~~~GyPK~I~~~lGlp~~~~~~~IDAA~~~~~~ 367 (460)
T 1qhu_A 295 IAHQWPQG----PSTVDAAFSWEDKLYLIQD--TKVYVFLTKG-GYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGS 367 (460)
T ss_dssp GGGTCTTS----CSSCSEEEEETTEEEEEET--TEEEEEECSB-SCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTC
T ss_pred hhhhccCC----CCCCcEEEEECCeEEEEeC--CEEEEEeCCC-CceecCCCCeEHHHhccCCCccccCcccEEEEeCCC
Confidence 111 1110 1112245567899999955 5789998653 12333221111 110 0011233322 36
Q ss_pred CEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 335 NELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 335 ~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++|++-|.. .+.||...
T Consensus 368 ~ktyfFkG~~--------ywryd~~~ 385 (460)
T 1qhu_A 368 SRLHIMAGRR--------LWWLDLKS 385 (460)
T ss_dssp CEEEEEETTE--------EEEEEGGG
T ss_pred CEEEEEECCE--------EEEEECCC
Confidence 8999998843 66777654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.93 E-value=0.16 Score=46.34 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=59.7
Q ss_pred eeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCC
Q 016421 183 GSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLET 260 (390)
Q Consensus 183 ~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~ 260 (390)
++.++.||+.+. + ..+..+|..+++ |+.-. .+ ...+.+..++++|+.++.+ ..++++|..+
T Consensus 6 ~v~~~~v~~gs~-d------g~v~a~d~~tG~~~W~~~~---~~-~~s~p~~~~g~~~v~~s~d------g~l~a~d~~t 68 (369)
T 2hz6_A 6 TLPETLLFVSTL-D------GSLHAVSKRTGSIKWTLKE---DP-VLQVPTHVEEPAFLPDPND------GSLYTLGSKN 68 (369)
T ss_dssp --CTTEEEEEET-T------SEEEEEETTTCCEEEEEEC---CC-SCCCC-----CCEEECTTT------CCEEEC----
T ss_pred eeeCCEEEEEcC-C------CEEEEEECCCCCEEEEecC---CC-ceecceEcCCCEEEEeCCC------CEEEEEECCC
Confidence 344677776532 2 358899998885 87643 11 1122234567788876433 3478899865
Q ss_pred C--ceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc--eEEccCCCccccCCCcceeEEEEeCCE
Q 016421 261 R--KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT--WDVLGRLPVRADLSNGWGLAFKACGNE 336 (390)
Q Consensus 261 ~--~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~--W~~v~~~~~~~~~~~~~~~~~~~~~~~ 336 (390)
+ .|..-...+... ...+ +...++.+| +|...+.++.+|+.+++ |+.-... . ...+..++.
T Consensus 69 G~~~w~~~~~~~~~~----~~sp-~~~~~~~v~-~g~~dg~v~a~D~~tG~~~w~~~~~~--~--------~~~~p~~~~ 132 (369)
T 2hz6_A 69 NEGLTKLPFTIPELV----QASP-CRSSDGILY-MGKKQDIWYVIDLLTGEKQQTLSSAF--A--------DSLSPSTSL 132 (369)
T ss_dssp -CCSEECSCCHHHHH----TTCS-CC-----CC-CCEEEEEEEEECCC--------------------------------
T ss_pred CceeeeeeccCcccc----ccCc-eEecCCEEE-EEeCCCEEEEEECCCCcEEEEecCCC--c--------ccccccCCE
Confidence 4 565322111100 0111 111345554 34444678899988764 6542211 0 011123555
Q ss_pred EEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEE
Q 016421 337 LLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKV 371 (390)
Q Consensus 337 lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~ 371 (390)
||+.+ .+ ..+++||+.+ ++..|+.
T Consensus 133 v~~~~-~d------g~v~a~d~~t----G~~~W~~ 156 (369)
T 2hz6_A 133 LYLGR-TE------YTITMYDTKT----RELRWNA 156 (369)
T ss_dssp EEEEE-EE------EEEECCCSSS----SSCCCEE
T ss_pred EEEEe-cC------CEEEEEECCC----CCEEEeE
Confidence 55543 22 2588999988 4556874
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=90.92 E-value=13 Score=36.42 Aligned_cols=219 Identities=11% Similarity=0.046 Sum_probs=120.7
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe---CCEEEEEcccccCCeEEEEECCCCcEeecCCC
Q 016421 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV---GSELLVFGRELFDFAIWKYSLVFRSWMKCEGM 173 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~ 173 (390)
+++| ++.....+...|+....-..+.+++... ....+.. ++.||+... ....++++++.......+-..
T Consensus 6 ~~~L-l~s~~~~I~~i~l~~~~~~~~~~~~~~~-----~~~~l~~d~~~~~lywtD~--~~~~I~r~~~~g~~~~~v~~~ 77 (628)
T 4a0p_A 6 EAFL-LFSRRADIRRISLETNNNNVAIPLTGVK-----EASALDFDVTDNRIYWTDI--SLKTISRAFMNGSALEHVVEF 77 (628)
T ss_dssp CCEE-EEEETTEEEEEESSCTTCEEECCCCSCS-----CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECS
T ss_pred CcEE-EEEeCCcEEEEECCCCCcceEEEcCCCC-----ceEEEEEECCCCEEEEEEC--CCCeEEEEECCCCCcEEEEeC
Confidence 3433 3345677888888765433322222111 1122332 578888643 245788888876555443221
Q ss_pred CCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEc--CCCCCCCcCceEEEE--CCEEEEEecccCCC
Q 016421 174 NHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML--PSMHSPRRLCSGFFM--DGKFYVIGGMSSPT 247 (390)
Q Consensus 174 ~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~ 247 (390)
.. ....++++ .+++||+.-.. ...++++++....-+.+ ..+..| ...++- +|.||+.-- +
T Consensus 78 g~-~~P~GlAvD~~~~~LY~tD~~------~~~I~v~~~dG~~~~~l~~~~l~~P---~~iavdp~~G~lY~tD~---g- 143 (628)
T 4a0p_A 78 GL-DYPEGMAVDWLGKNLYWADTG------TNRIEVSKLDGQHRQVLVWKDLDSP---RALALDPAEGFMYWTEW---G- 143 (628)
T ss_dssp SC-SCCCEEEEETTTTEEEEEETT------TTEEEEEETTSTTCEEEECSSCCCE---EEEEEETTTTEEEEEEC---S-
T ss_pred CC-CCcceEEEEeCCCEEEEEECC------CCEEEEEecCCCcEEEEEeCCCCCc---ccEEEccCCCeEEEeCC---C-
Confidence 11 11123444 57899998432 35789999875543332 223222 233333 689999731 0
Q ss_pred ccCceEEEEeCCCCceEEccC-CCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEccC-CCccccCC
Q 016421 248 VSLTCGEEFDLETRKWRKIEG-MYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLGR-LPVRADLS 323 (390)
Q Consensus 248 ~~~~~v~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~~-~~~~~~~~ 323 (390)
....|+++++....-..+.. +.. ...+++- +++||+.....+.|+++|+....=+.+.. ++.+
T Consensus 144 -~~~~I~r~~~dG~~~~~l~~~~~~--------P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P---- 210 (628)
T 4a0p_A 144 -GKPKIDRAAMDGSERTTLVPNVGR--------ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHP---- 210 (628)
T ss_dssp -SSCEEEEEETTSCSCEEEECSCSS--------EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCE----
T ss_pred -CCCEEEEEeCCCCceEEEECCCCC--------cceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCc----
Confidence 13468888887665554432 111 1124433 68999999888999999987643233322 2211
Q ss_pred CcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 324 NGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 324 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.++++.+++||+.--..+ .|+..|..+
T Consensus 211 ----~glav~~~~ly~tD~~~~------~I~~~dk~t 237 (628)
T 4a0p_A 211 ----FGLTQYQDYIYWTDWSRR------SIERANKTS 237 (628)
T ss_dssp ----EEEEEETTEEEEEETTTT------EEEEEETTT
T ss_pred ----eEEEEECCEEEEecCCCC------EEEEEECCC
Confidence 345667899998874321 355555544
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=90.59 E-value=10 Score=34.74 Aligned_cols=197 Identities=13% Similarity=0.044 Sum_probs=102.0
Q ss_pred ccEEEEEeC-CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccCCeEEEEECCCCc-EeecCCC
Q 016421 97 EHWVYLVCD-PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFDFAIWKYSLVFRS-WMKCEGM 173 (390)
Q Consensus 97 ~~~l~~~~~-~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~t~~-W~~~~~~ 173 (390)
+..||+... ...+..+|+.+..-..+....... ...+.. ++.+|+.... ....++++++.+.. ...+...
T Consensus 141 ~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~------~ia~~~~g~~l~~~d~~-~~~~I~~~d~~~~~~~~~~g~~ 213 (409)
T 3hrp_A 141 NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG------KPAVTKDKQRVYSIGWE-GTHTVYVYMKASGWAPTRIGQL 213 (409)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC------BCEECTTSSEEEEEBSS-TTCEEEEEEGGGTTCEEEEEEC
T ss_pred CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC------ceeEecCCCcEEEEecC-CCceEEEEEcCCCceeEEeeec
Confidence 355777653 467888999876554432221111 012222 3456665432 12278899987653 2233111
Q ss_pred -C-CCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC---CCCCCCcC-c-eEEEE--CCEEEEEec
Q 016421 174 -N-HPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP---SMHSPRRL-C-SGFFM--DGKFYVIGG 242 (390)
Q Consensus 174 -~-~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~r~~-~-~~~~~--~~~iyv~GG 242 (390)
+ .....+++++. ++.||+... ...+++||+.++....+. ........ . ..+.. ++.||+.-.
T Consensus 214 ~~~~~~~p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 214 GSTFSGKIGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp CTTSCSCCCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred cchhcCCcEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 1 11112233332 689999421 236899999888755441 11111222 2 44444 589999732
Q ss_pred ccCCCccCceEEEEeCCCCceEEccCCC-C-CCC-----CcCCCCC-EEEE-ECCEEEEEec-CCCeEEEEeCCCCceEE
Q 016421 243 MSSPTVSLTCGEEFDLETRKWRKIEGMY-P-NVN-----RAAQAPP-LVAV-VDNQLYAVEY-LTNMVKKYDKLKNTWDV 312 (390)
Q Consensus 243 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~-~~~-----~~~~~~~-~~~~-~~g~l~v~gg-~~~~v~~yd~~~~~W~~ 312 (390)
....|++||+... ...+.... . ... .+.-..+ .+++ -+|.||+.+. ....|.+||+.++.-..
T Consensus 287 ------~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~ 359 (409)
T 3hrp_A 287 ------NLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST 359 (409)
T ss_dssp ------TTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE
T ss_pred ------CCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE
Confidence 2356888987754 22222111 0 000 0000112 2333 2578999998 88999999977776665
Q ss_pred cc
Q 016421 313 LG 314 (390)
Q Consensus 313 v~ 314 (390)
+.
T Consensus 360 ~~ 361 (409)
T 3hrp_A 360 VA 361 (409)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=90.46 E-value=4.7 Score=34.98 Aligned_cols=185 Identities=11% Similarity=0.055 Sum_probs=92.3
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016421 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
+.||+.+. ....+++|++ +++....... ... ..+.+. -++++|+.... ...+.+||+. ++.+.+...
T Consensus 57 ~~l~~~d~--~~~~i~~~~~-~g~~~~~~~~-~~~-~~gl~~d~dG~l~v~~~~------~~~v~~~~~~-g~~~~~~~~ 124 (305)
T 3dr2_A 57 RTLVWSDL--VGRRVLGWRE-DGTVDVLLDA-TAF-TNGNAVDAQQRLVHCEHG------RRAITRSDAD-GQAHLLVGR 124 (305)
T ss_dssp TEEEEEET--TTTEEEEEET-TSCEEEEEES-CSC-EEEEEECTTSCEEEEETT------TTEEEEECTT-SCEEEEECE
T ss_pred CEEEEEEC--CCCEEEEEeC-CCCEEEEeCC-CCc-cceeeECCCCCEEEEECC------CCEEEEECCC-CCEEEEEec
Confidence 44666542 2356888888 4444333221 111 112222 25778776321 2358888886 666554321
Q ss_pred CCC-C--cCceEEE-ECCEEEEE----ecccC-------CCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-
Q 016421 222 HSP-R--RLCSGFF-MDGKFYVI----GGMSS-------PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV- 285 (390)
Q Consensus 222 ~~~-r--~~~~~~~-~~~~iyv~----GG~~~-------~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~- 285 (390)
... + .....+. -+|+||+. |.... .......+++||+.+++++.+. ... ....++.
T Consensus 125 ~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~------~p~gl~~s 196 (305)
T 3dr2_A 125 YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD------HPNGLAFS 196 (305)
T ss_dssp ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES------SEEEEEEC
T ss_pred cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC------CCcceEEc
Confidence 111 1 1112222 37888885 32110 0011356899999888887664 110 0012333
Q ss_pred ECC-EEEEEecC-----CCeEEEEeCCCCceEE---ccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeee
Q 016421 286 VDN-QLYAVEYL-----TNMVKKYDKLKNTWDV---LGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSW 356 (390)
Q Consensus 286 ~~g-~l~v~gg~-----~~~v~~yd~~~~~W~~---v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y 356 (390)
-++ .||+.... .+.|++||...+.... +...+... . -+. .+.-+|+||+..+ . .|++|
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~--p--dgi-~~d~~G~lwv~~~-~-------gv~~~ 263 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGL--P--DGF-CVDRGGWLWSSSG-T-------GVCVF 263 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSC--C--CSE-EECTTSCEEECCS-S-------EEEEE
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCC--C--CeE-EECCCCCEEEecC-C-------cEEEE
Confidence 244 58887654 2689999987664321 11111110 0 112 2234677877652 1 38889
Q ss_pred cCCC
Q 016421 357 CPKS 360 (390)
Q Consensus 357 ~~~~ 360 (390)
+++.
T Consensus 264 ~~~g 267 (305)
T 3dr2_A 264 DSDG 267 (305)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 9865
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.91 E-value=18 Score=36.49 Aligned_cols=170 Identities=12% Similarity=0.057 Sum_probs=89.4
Q ss_pred eEEEEECCCCcEeecCCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCC----cEEE-cC-CCCCCCcC
Q 016421 156 AIWKYSLVFRSWMKCEGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTG----RWEM-LP-SMHSPRRL 227 (390)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~----~W~~-~~-~~~~~r~~ 227 (390)
.+..++.....+..+... .....++++ .++.||+.-.. ...+.++++... .... +. .+..+
T Consensus 405 ~Ir~i~l~~~~~~~l~~~--~~~~~gl~~d~~~~~lY~sD~~------~~~I~~~~l~g~~~~~~~~~vi~~~l~~P--- 473 (791)
T 3m0c_C 405 EVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTVISRDIQAP--- 473 (791)
T ss_dssp SEEEECTTSCCCEEEECS--CSSEEEEEEETTTTEEEEEETT------TTEEEEEEC--------CEEEECSSCSCC---
T ss_pred ceeEeeccCCcceeeecC--CCceEEEeecccCCeeEEeecc------ceeEEEEeccCCCCCcceeEEEecCCCCc---
Confidence 455555555555443221 122223333 26889998542 245777777642 2222 22 22222
Q ss_pred ceEEE--ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE--ECCEEEEEec-CCCeEEE
Q 016421 228 CSGFF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV--VDNQLYAVEY-LTNMVKK 302 (390)
Q Consensus 228 ~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~g~l~v~gg-~~~~v~~ 302 (390)
.++++ .+++||+.-. ....|+++|+....-..+...... ....+++ .+|.||+... ....|++
T Consensus 474 ~GLAvD~~~~~LY~tD~------~~~~I~v~~ldG~~~~~l~~~~l~------~P~gIaVDp~~g~LYwtD~g~~~~I~~ 541 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFRENGS------KPRAIVVDPVHGFMYWTDWGTPAKIKK 541 (791)
T ss_dssp CEEEEETTTTEEEEEET------TTTEEEEEETTSSSEEEEEECTTC------CEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred ceeeeeecCCcEEEEec------CCCeEEEEeCCCCeEEEEEeCCCC------CcceEEEecCCCCEEEecCCCCCeEEE
Confidence 22333 3679999832 245788899887665544321110 0113444 3689999984 4478999
Q ss_pred EeCCCCceEEccC--CCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 303 YDKLKNTWDVLGR--LPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 303 yd~~~~~W~~v~~--~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.++....=..+.. +..+ .|.++-..+++||+.-... ..|++++++.
T Consensus 542 ~~~dG~~~~~lv~~~l~~P------~GLavD~~~~~LYwaD~~~------~~I~~~d~dG 589 (791)
T 3m0c_C 542 GGLNGVDIYSLVTENIQWP------NGITLDLLSGRLYWVDSKL------HSISSIDVNG 589 (791)
T ss_dssp EETTSCCEEEEECSSCSCE------EEEEEETTTTEEEEEETTT------TEEEEEETTS
T ss_pred EecCCCceEEEEeCCCCCc------eEEEEecCCCeEEEEeCCC------CcEEEEecCC
Confidence 9987765444322 2111 1233323478999996432 2577888765
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=89.83 E-value=3 Score=36.22 Aligned_cols=103 Identities=14% Similarity=0.001 Sum_probs=52.1
Q ss_pred ceEEEEECCCCcEEEcCCCCCCC-cCceEEE-ECC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCC
Q 016421 203 KSAELYDSTTGRWEMLPSMHSPR-RLCSGFF-MDG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQA 279 (390)
Q Consensus 203 ~~~~~yd~~t~~W~~~~~~~~~r-~~~~~~~-~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 279 (390)
..+.++|+.+++-...-..+... .....+. -++ .+|+.+.. ...+..||+.+.+-...-..+..... ...
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~~~~~~~~~~~-~~~ 83 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLGRIDLSTPEER-VKS 83 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEEEEECCBTTEE-EEC
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC------CCeEEEEECCCCCeEeeEEcCCcccc-ccc
Confidence 45889999887654322222210 1122332 255 67776542 24588899988765432111110000 000
Q ss_pred CCEEEE-ECC-EEEEEec-----------CCCeEEEEeCCCCceEE
Q 016421 280 PPLVAV-VDN-QLYAVEY-----------LTNMVKKYDKLKNTWDV 312 (390)
Q Consensus 280 ~~~~~~-~~g-~l~v~gg-----------~~~~v~~yd~~~~~W~~ 312 (390)
...++. -+| .+|+... ..+.+.+||..+.+...
T Consensus 84 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred ccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEE
Confidence 112333 244 6666641 24789999998876543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=89.46 E-value=10 Score=33.17 Aligned_cols=171 Identities=12% Similarity=0.043 Sum_probs=91.6
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCC----CcEEEc-C-CCCCCCc
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTT----GRWEML-P-SMHSPRR 226 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t----~~W~~~-~-~~~~~r~ 226 (390)
+.+.++|+.+.....+-+ ......+.+.. ++.||+.... ...+.++|+.+ ..-+.+ . .+..+
T Consensus 10 ~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~------~~~I~~~~~~g~~~~~~~~~~~~~~~~~p-- 79 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTVISRDIQAP-- 79 (316)
T ss_dssp SSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETT------TTEEEEEEC--------CEEEECSSCSCC--
T ss_pred CeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECC------CCcEEEEECCCCCCCcccEEEEeCCCCCc--
Confidence 457778887776544322 12222344433 6799998542 35688898876 222222 1 12222
Q ss_pred CceEEE--ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCC-CeEE
Q 016421 227 LCSGFF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLT-NMVK 301 (390)
Q Consensus 227 ~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~-~~v~ 301 (390)
.+.++ .+++||+.-. ....|.++|+....-..+...... ....+++- ++.||+.+... ..|+
T Consensus 80 -~glavd~~~~~ly~~d~------~~~~I~~~~~~g~~~~~~~~~~~~------~P~~iavdp~~g~ly~~d~~~~~~I~ 146 (316)
T 1ijq_A 80 -DGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFRENGS------KPRAIVVDPVHGFMYWTDWGTPAKIK 146 (316)
T ss_dssp -CEEEEETTTTEEEEEET------TTTEEEEEETTSSSEEEEEECTTC------CEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred -CEEEEeecCCeEEEEEC------CCCEEEEEeCCCCceEEEEECCCC------CcceEEeCCCCCEEEEEccCCCCeEE
Confidence 23343 3789999732 235688898876543333211100 11134443 78999997543 7899
Q ss_pred EEeCCCCceEEccCCCccccCCCcceeEEEE--eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 302 KYDKLKNTWDVLGRLPVRADLSNGWGLAFKA--CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 302 ~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++++...=..+.... .. +-.+++. .+++||+.-... ..|+++|++.
T Consensus 147 ~~~~dG~~~~~~~~~~--~~----~P~gla~d~~~~~lY~~D~~~------~~I~~~d~dg 195 (316)
T 1ijq_A 147 KGGLNGVDIYSLVTEN--IQ----WPNGITLDLLSGRLYWVDSKL------HSISSIDVNG 195 (316)
T ss_dssp EEETTSCCEEEEECSS--CS----CEEEEEEETTTTEEEEEETTT------TEEEEEETTS
T ss_pred EEcCCCCCeEEEEECC--CC----CceEEEEeccCCEEEEEECCC------CeEEEEecCC
Confidence 9998765444332111 11 1123333 378999987533 2577888764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.31 E-value=11 Score=33.16 Aligned_cols=152 Identities=11% Similarity=0.010 Sum_probs=75.0
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEE--Ec
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE--ML 218 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~--~~ 218 (390)
++.+++.|+ .+..+.+||..+.+-.............+++. -++.+++.|+.++ .+.+||..++.-. .+
T Consensus 138 ~~~~l~s~s--~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg------~i~iwd~~~~~~~~~~~ 209 (343)
T 3lrv_A 138 NTEYFIWAD--NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG------ILDVYNLSSPDQASSRF 209 (343)
T ss_dssp -CCEEEEEE--TTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS------CEEEEESSCTTSCCEEC
T ss_pred CCCEEEEEe--CCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC------EEEEEECCCCCCCccEE
Confidence 344555554 34578899988877643322221111112222 2677777777543 4889999887642 22
Q ss_pred CCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceE-EccCCCCCCCCcCCCCCEEEE-ECCEEEEEe
Q 016421 219 PSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWR-KIEGMYPNVNRAAQAPPLVAV-VDNQLYAVE 294 (390)
Q Consensus 219 ~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~g 294 (390)
.. ........+.. ++...+.|+ ++ .+..||+.+.+-. .+..+..... ......++. .+|+.++.+
T Consensus 210 ~~--~h~~~v~~l~fs~~g~~l~s~~-~~------~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~ 278 (343)
T 3lrv_A 210 PV--DEEAKIKEVKFADNGYWMVVEC-DQ------TVVCFDLRKDVGTLAYPTYTIPEF--KTGTVTYDIDDSGKNMIAY 278 (343)
T ss_dssp CC--CTTSCEEEEEECTTSSEEEEEE-SS------BEEEEETTSSTTCBSSCCCBC-------CCEEEEECTTSSEEEEE
T ss_pred ec--cCCCCEEEEEEeCCCCEEEEEe-CC------eEEEEEcCCCCcceeecccccccc--cccceEEEECCCCCEEEEe
Confidence 11 01112222333 566556555 21 4778998875421 1111111000 000001222 246666665
Q ss_pred cC-CCeEEEEeC--CCCceEE
Q 016421 295 YL-TNMVKKYDK--LKNTWDV 312 (390)
Q Consensus 295 g~-~~~v~~yd~--~~~~W~~ 312 (390)
+. .+.+.+|+. ....|..
T Consensus 279 s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 279 SNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp ETTTTEEEEEEECTTTCSEEE
T ss_pred cCCCCcEEEEEEcccccceEe
Confidence 44 667777776 5567987
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=89.05 E-value=4.2 Score=37.37 Aligned_cols=103 Identities=7% Similarity=0.010 Sum_probs=50.8
Q ss_pred EEEEeccCCCCCccceEEEEECCCCc---EEE--cCCCCCCCcCceEEEE---CCEEEEEecccCCCccCceEEEEeCCC
Q 016421 189 AIIAGGSDKNGHVLKSAELYDSTTGR---WEM--LPSMHSPRRLCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFDLET 260 (390)
Q Consensus 189 lyv~GG~~~~~~~~~~~~~yd~~t~~---W~~--~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~ 260 (390)
+++.|+.++ .+.+||..++. +.. .............+.. ++.+++.|+.+ ..+..||+.+
T Consensus 196 ~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d------g~i~i~d~~~ 263 (430)
T 2xyi_A 196 YLLSASDDH------TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD------QKLMIWDTRN 263 (430)
T ss_dssp EEEEECTTS------CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTC
T ss_pred eEEEEeCCC------eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC------CeEEEEECCC
Confidence 666666543 37889987632 211 1111111111222222 45666666543 3577899886
Q ss_pred Cc-eEEccCCCCCCCCcCCCCCEEEEE-CC-EEEEEecCCCeEEEEeCCC
Q 016421 261 RK-WRKIEGMYPNVNRAAQAPPLVAVV-DN-QLYAVEYLTNMVKKYDKLK 307 (390)
Q Consensus 261 ~~-W~~~~~~~~~~~~~~~~~~~~~~~-~g-~l~v~gg~~~~v~~yd~~~ 307 (390)
.. ...+..+... ......++.. ++ .+++.|+..+.|.+||..+
T Consensus 264 ~~~~~~~~~~~~~----~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 264 NNTSKPSHTVDAH----TAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp SCSSSCSEEEECC----SSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred CCCCcceeEeecC----CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence 52 1111111110 0001112222 23 4788888888999999876
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=89.02 E-value=12 Score=33.40 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=45.9
Q ss_pred CCEEEEEec----------CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeee
Q 016421 287 DNQLYAVEY----------LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSW 356 (390)
Q Consensus 287 ~g~l~v~gg----------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y 356 (390)
++++|+... ..+.|++||.++.+ .+..++... . ++.++..-+.+||+.++ ..|.+|
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--~v~~i~~~~-p---~~ia~spdg~~l~v~n~--------~~v~v~ 330 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--RVARIPGRD-A---LSMTIDQQRNLMLTLDG--------GNVNVY 330 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE--EEEEEECTT-C---CEEEEETTTTEEEEECS--------SCEEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCc--EEEEEecCC-e---eEEEECCCCCEEEEeCC--------CeEEEE
Confidence 478998753 13589999988875 444444333 1 23333333567777664 147789
Q ss_pred cCCCCCCCCCCce--EEecccCccCeEEeee
Q 016421 357 CPKSGVNNGTLDW--KVLAEKQHVGVFVYNC 385 (390)
Q Consensus 357 ~~~~~~~~~~~~W--~~~~~~p~~~~~~~~~ 385 (390)
|.++ + +.++..+..+..+...
T Consensus 331 D~~t--------~~l~~~~~i~~~G~~P~~~ 353 (361)
T 2oiz_A 331 DISQ--------PEPKLLRTIEGAAEASLQV 353 (361)
T ss_dssp ECSS--------SSCEEEEEETTSCSSEEEE
T ss_pred ECCC--------CcceeeEEeccCCCCcEEE
Confidence 8865 6 7777754444444433
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=88.91 E-value=11 Score=32.65 Aligned_cols=195 Identities=10% Similarity=0.092 Sum_probs=96.6
Q ss_pred ccEEEEEeCCCeeEEEecC-CCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccCCeEEEEECCCCc--EeecCC
Q 016421 97 EHWVYLVCDPRGWEAFDPM-KKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFDFAIWKYSLVFRS--WMKCEG 172 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~-~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~ 172 (390)
+..+|+......+++||+. ...|..-...+. . ...+.. ++.||+... ...++.||+. ++ |.....
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~---~----~~~~~~~~g~l~vgt~---~~~l~~~d~~-g~~~~~~~~~ 175 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAI---Y----ATPIVSEDGTIYVGSN---DNYLYAINPD-GTEKWRFKTN 175 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSCC---C----SCCEECTTSCEEEECT---TSEEEEECTT-SCEEEEEECS
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCce---e----eeeEEcCCCEEEEEcC---CCEEEEECCC-CCEeEEEecC
Confidence 5667776556778999988 335654322111 0 112233 566766432 3578899988 43 544321
Q ss_pred CCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCC-CcEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCcc
Q 016421 173 MNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTT-GRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVS 249 (390)
Q Consensus 173 ~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 249 (390)
... ....+. -++.+|+.. ..+..||... ..|+..... .. ..+.+.. +|.||+...
T Consensus 176 --~~~-~~~~~~d~~g~l~v~t---------~~l~~~d~~g~~~~~~~~~~--~~-~~~~~~~~~g~l~v~t~------- 233 (330)
T 3hxj_A 176 --DAI-TSAASIGKDGTIYFGS---------DKVYAINPDGTEKWNFYAGY--WT-VTRPAISEDGTIYVTSL------- 233 (330)
T ss_dssp --SCC-CSCCEECTTCCEEEES---------SSEEEECTTSCEEEEECCSS--CC-CSCCEECTTSCEEEEET-------
T ss_pred --CCc-eeeeEEcCCCEEEEEe---------CEEEEECCCCcEEEEEccCC--cc-eeceEECCCCeEEEEcC-------
Confidence 111 112223 367777653 2378888432 247654221 11 1122222 557777531
Q ss_pred CceEEEEeCCCCc-eEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEecCCCeEEEEeCCCC-ceEEccCCCccccCCCcc
Q 016421 250 LTCGEEFDLETRK-WRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEYLTNMVKKYDKLKN-TWDVLGRLPVRADLSNGW 326 (390)
Q Consensus 250 ~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg~~~~v~~yd~~~~-~W~~v~~~~~~~~~~~~~ 326 (390)
...+.+||+.... |..-..... .. ..+.. +|.||+.. ..+.+++||+..+ .|..- ++....
T Consensus 234 ~~gl~~~~~~g~~~~~~~~~~~~-------~~-~~~~~~~g~l~v~t-~~ggl~~~d~~g~~~~~~~--~~~~~~----- 297 (330)
T 3hxj_A 234 DGHLYAINPDGTEKWRFKTGKRI-------ES-SPVIGNTDTIYFGS-YDGHLYAINPDGTEKWNFE--TGSWII----- 297 (330)
T ss_dssp TTEEEEECTTSCEEEEEECSSCC-------CS-CCEECTTSCEEEEC-TTCEEEEECTTSCEEEEEE--CSSCCC-----
T ss_pred CCeEEEECCCCCEeEEeeCCCCc-------cc-cceEcCCCeEEEec-CCCCEEEECCCCcEEEEEE--cCCccc-----
Confidence 1347778875443 543221111 01 12333 67777653 3457999997544 46542 221111
Q ss_pred eeEEEE-eCCEEEEEc
Q 016421 327 GLAFKA-CGNELLVVG 341 (390)
Q Consensus 327 ~~~~~~-~~~~lyv~G 341 (390)
.+.+. .+++||+-+
T Consensus 298 -~~~~~d~~g~l~~gt 312 (330)
T 3hxj_A 298 -ATPVIDENGTIYFGT 312 (330)
T ss_dssp -SCCEECTTCCEEEEC
T ss_pred -cceEEcCCCEEEEEc
Confidence 12333 577888743
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=88.84 E-value=11 Score=32.74 Aligned_cols=143 Identities=10% Similarity=0.064 Sum_probs=70.9
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++..++.|+ .+..+.+||..+++-... +.........+.+ ++.+++.|+.++ .+.++|.....-..+.
T Consensus 76 dg~~l~s~s--~D~~v~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~D~------~i~vwd~~~~~~~~~~ 145 (319)
T 3frx_A 76 DGAYALSAS--WDKTLRLWDVATGETYQR--FVGHKSDVMSVDIDKKASMIISGSRDK------TIKVWTIKGQCLATLL 145 (319)
T ss_dssp TSSEEEEEE--TTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSCEEEEEETTS------CEEEEETTSCEEEEEC
T ss_pred CCCEEEEEe--CCCEEEEEECCCCCeeEE--EccCCCcEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCeEEEEe
Confidence 455555554 346788999988754221 1111111111222 456677776543 3778887654433321
Q ss_pred CCCCCCcCceEEEE--------CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEE-EECCEE
Q 016421 220 SMHSPRRLCSGFFM--------DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVA-VVDNQL 290 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--------~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~g~l 290 (390)
. .......+.. ++.+++.|+.+ ..+..||+.+.+-... +... ......++ .-+|++
T Consensus 146 ~---h~~~v~~~~~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~--~~~h----~~~v~~~~~sp~g~~ 210 (319)
T 3frx_A 146 G---HNDWVSQVRVVPNEKADDDSVTIISAGND------KMVKAWNLNQFQIEAD--FIGH----NSNINTLTASPDGTL 210 (319)
T ss_dssp C---CSSCEEEEEECCC------CCEEEEEETT------SCEEEEETTTTEEEEE--ECCC----CSCEEEEEECTTSSE
T ss_pred c---cCCcEEEEEEccCCCCCCCccEEEEEeCC------CEEEEEECCcchhhee--ecCC----CCcEEEEEEcCCCCE
Confidence 1 1111111111 23345555543 2467788876543221 1110 00001122 235777
Q ss_pred EEEecCCCeEEEEeCCCCc
Q 016421 291 YAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 291 ~v~gg~~~~v~~yd~~~~~ 309 (390)
++.|+.-+.|.+||..+.+
T Consensus 211 l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 211 IASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp EEEEETTCEEEEEETTTTE
T ss_pred EEEEeCCCeEEEEECCCCc
Confidence 7888888899999988765
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=88.76 E-value=11 Score=32.63 Aligned_cols=219 Identities=8% Similarity=-0.001 Sum_probs=99.7
Q ss_pred EEEEEeCCCeeEEEec-CCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccCCeEEEEECCCCc-------Eee
Q 016421 99 WVYLVCDPRGWEAFDP-MKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFDFAIWKYSLVFRS-------WMK 169 (390)
Q Consensus 99 ~l~~~~~~~~~~~~d~-~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~t~~-------W~~ 169 (390)
.++..+....+..+|. ...+...+...+... .-..+.. .+.+++.|+. ...+.+||..+.. ...
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-----~v~~l~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~ 143 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPSFQALTNNEANL-----GICRICKYGDDKLIAASW--DGLIEVIDPRNYGDGVIAVKNLN 143 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSSEEECBSCCCCS-----CEEEEEEETTTEEEEEET--TSEEEEECHHHHTTBCEEEEESC
T ss_pred EEEEEcCCCeEEEEEeccCCceEeccccCCCC-----ceEEEEeCCCCEEEEEcC--CCeEEEEcccccccccccccCCe
Confidence 4555555677888998 777655543310110 0111221 1444444442 3577888876400 222
Q ss_pred cCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCC-Cc--EEEcCCCCCCCcCceEEEE--CCEEEEEeccc
Q 016421 170 CEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTT-GR--WEMLPSMHSPRRLCSGFFM--DGKFYVIGGMS 244 (390)
Q Consensus 170 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t-~~--W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~ 244 (390)
+..+.......++....+. ++.|+.+ ..+.+||..+ .. ...... +....-.+.+.. ++++++.|+.+
T Consensus 144 ~~~~~~~~~v~~~~~~~~~-l~~~~~d------~~i~i~d~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d 215 (342)
T 1yfq_A 144 SNNTKVKNKIFTMDTNSSR-LIVGMNN------SQVQWFRLPLCEDDNGTIEES-GLKYQIRDVALLPKEQEGYACSSID 215 (342)
T ss_dssp SSSSSSCCCEEEEEECSSE-EEEEEST------TEEEEEESSCCTTCCCEEEEC-SCSSCEEEEEECSGGGCEEEEEETT
T ss_pred eeEEeeCCceEEEEecCCc-EEEEeCC------CeEEEEECCccccccceeeec-CCCCceeEEEECCCCCCEEEEEecC
Confidence 2222222222233333445 5555432 3588999887 43 222111 111111122232 46777777653
Q ss_pred CCCccCceEEEEeCCCC-------ceEEccCCCC-CCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEcc
Q 016421 245 SPTVSLTCGEEFDLETR-------KWRKIEGMYP-NVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 245 ~~~~~~~~v~~yd~~~~-------~W~~~~~~~~-~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~ 314 (390)
+ .+..||.... .-..+..... ............+.. ++++++.|+..+.|.+||..+.+-..
T Consensus 216 g------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-- 287 (342)
T 1yfq_A 216 G------RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK-- 287 (342)
T ss_dssp S------EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE--
T ss_pred C------cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhh--
Confidence 2 3444444432 1111111110 000000001112222 57777777777899999998776432
Q ss_pred CCCcc-ccCCCcceeEEEEeCCEEEEEcCCCC
Q 016421 315 RLPVR-ADLSNGWGLAFKACGNELLVVGGQRG 345 (390)
Q Consensus 315 ~~~~~-~~~~~~~~~~~~~~~~~lyv~GG~~~ 345 (390)
.+... . ..-.+++ .++++++.|+.++
T Consensus 288 ~~~~~h~----~~v~~~~-~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 288 NFAKFNE----DSVVKIA-CSDNILCLATSDD 314 (342)
T ss_dssp ECCCCSS----SEEEEEE-ECSSEEEEEEECT
T ss_pred hhhcccC----CCceEec-CCCCeEEEEecCC
Confidence 22221 1 1113344 7777888887664
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=88.72 E-value=14 Score=33.70 Aligned_cols=171 Identities=11% Similarity=0.031 Sum_probs=92.3
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCC----cEEE-cC-CCCCCCc
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTG----RWEM-LP-SMHSPRR 226 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~----~W~~-~~-~~~~~r~ 226 (390)
..+.+.++....+..+.+ ......+++.. ++.||+.--. ...+.++++... .... +. .+..
T Consensus 92 ~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~------~~~I~~~~~~g~~~~~~~~~~~~~~~~~--- 160 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTVISRDIQA--- 160 (400)
T ss_dssp TEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETT------TTEEEEEEC------CCCEEEECSSCSC---
T ss_pred ceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecC------CCeEEEEEcccCCCCCcceEEEeCCCCC---
Confidence 467777777766655432 12222334332 6899998432 345888888652 1222 22 1111
Q ss_pred CceEEE--ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE--ECCEEEEEe-cCCCeEE
Q 016421 227 LCSGFF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV--VDNQLYAVE-YLTNMVK 301 (390)
Q Consensus 227 ~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~g~l~v~g-g~~~~v~ 301 (390)
..+.++ .+++||+.-.. ...|+++|+....-..+...... ....+++ .+|.||+.. +....|+
T Consensus 161 p~glavD~~~~~lY~~d~~------~~~I~~~~~~g~~~~~l~~~~~~------~P~~iavdp~~g~ly~td~~~~~~I~ 228 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRENGS------KPRAIVVDPVHGFMYWTDWGTPAKIK 228 (400)
T ss_dssp EEEEEEETTTTEEEEEETT------TTEEEEECTTTCSEEEEEECSSC------CEEEEEEETTTTEEEEEECSSSCCEE
T ss_pred cccEEEEecCCceEEEECC------CCeEEEEeCCCCceEEEEeCCCC------CcceEEEecccCeEEEEeCCCCCEEE
Confidence 123333 37899998432 34688899887665444321110 0113444 368999997 4457899
Q ss_pred EEeCCCCceEEcc--CCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 302 KYDKLKNTWDVLG--RLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 302 ~yd~~~~~W~~v~--~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++++...=..+. .+..+ .|.++-..+++||+.-... ..|+.+|++.
T Consensus 229 ~~~~dG~~~~~~~~~~l~~P------~glavd~~~~~lY~aD~~~------~~I~~~d~dG 277 (400)
T 3p5b_L 229 KGGLNGVDIYSLVTENIQWP------NGITLDLLSGRLYWVDSKL------HSISSIDVNG 277 (400)
T ss_dssp EEETTSCSCEEEECSSCSCE------EEEEEETTTTEEEEEETTT------TEEEEEETTS
T ss_pred EEeCCCCccEEEEECCCCce------EEEEEEeCCCEEEEEECCC------CEEEEEeCCC
Confidence 9998765433332 12111 1233322478999986532 2588888765
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=88.60 E-value=17 Score=34.45 Aligned_cols=178 Identities=11% Similarity=0.072 Sum_probs=85.6
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++..++.|+. ...+.+||.....-..+... ......+. -+++.++.|+.+ ..+.+||.....-..+.
T Consensus 355 ~g~~l~~~~~--dg~v~~~~~~~~~~~~~~~~---~~~v~~~~~s~dg~~l~~~~~d------~~v~~~~~~~~~~~~~~ 423 (577)
T 2ymu_A 355 DGQTIASASD--DKTVKLWNRNGQLLQTLTGH---SSSVRGVAFSPDGQTIASASDD------KTVKLWNRNGQLLQTLT 423 (577)
T ss_dssp TSSEEEEEET--TSEEEEEETTCCEEEEEECC---SSCEEEEEECTTSSCEEEEETT------SEEEEECTTCCEEEEEE
T ss_pred CCCEEEEEeC--CCEEEEEcCCCCEEEEecCC---CCCeEEEEECCCCCEEEEEeCC------CEEEEEeCCCCEEEEec
Confidence 4555555542 34677888654433333221 11111122 255666666543 34777885433322221
Q ss_pred CCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEE-EECCEEEEEecC
Q 016421 220 SMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVA-VVDNQLYAVEYL 296 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg~ 296 (390)
. .......+.+ ++++.+.++.+ ..+..||.....-..+...... ...++ .-++++++.++.
T Consensus 424 ~---~~~~v~~~~~s~d~~~l~~~~~d------~~v~~w~~~~~~~~~~~~~~~~-------v~~~~~spd~~~las~~~ 487 (577)
T 2ymu_A 424 G---HSSSVWGVAFSPDDQTIASASDD------KTVKLWNRNGQLLQTLTGHSSS-------VRGVAFSPDGQTIASASD 487 (577)
T ss_dssp C---CSSCEEEEEECTTSSEEEEEETT------SEEEEEETTSCEEEEEECCSSC-------EEEEEECTTSCEEEEEET
T ss_pred C---CCCCeEEEEECCCCCEEEEEcCC------CEEEEEECCCCEEEEEcCCCCC-------EEEEEEcCCCCEEEEEeC
Confidence 1 1111122222 56666666543 2467788765444433322111 01122 236777888877
Q ss_pred CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016421 297 TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 297 ~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
.+.|.+||...+.-..+.. .. ..-.+++. -++++++.|+.++ .|.+||..
T Consensus 488 d~~i~iw~~~~~~~~~~~~---h~----~~v~~l~~s~dg~~l~s~~~dg------~v~lwd~~ 538 (577)
T 2ymu_A 488 DKTVKLWNRNGQLLQTLTG---HS----SSVRGVAFSPDGQTIASASDDK------TVKLWNRN 538 (577)
T ss_dssp TSEEEEEETTSCEEEEEEC---CS----SCEEEEEECTTSSCEEEEETTS------EEEEECTT
T ss_pred CCEEEEEcCCCCEEEEEeC---CC----CCEEEEEEcCCCCEEEEEECcC------EEEEEeCC
Confidence 7889999965433222221 11 01112222 2667777777653 57788864
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.54 E-value=15 Score=33.76 Aligned_cols=151 Identities=9% Similarity=-0.047 Sum_probs=74.8
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeec-CCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016421 143 SELLVFGRELFDFAIWKYSLVFRSWMKC-EGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
+.+++.|+. ...+.+||..+.+.... ..-..... .+++..++..++.|+.+ ..+.+||..+++....-..
T Consensus 210 ~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~h~~~v-~~~~~sd~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 210 HQFIITSDR--DEHIKISHYPQCFIVDKWLFGHKHFV-SSICCGKDYLLLSAGGD------DKIFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp CEEEEEEET--TSCEEEEEESCTTCEEEECCCCSSCE-EEEEECSTTEEEEEESS------SEEEEEETTTCCEEEEEEC
T ss_pred CcEEEEEcC--CCcEEEEECCCCceeeeeecCCCCce-EEEEECCCCEEEEEeCC------CeEEEEECCCCcEeeeecc
Confidence 666666653 35788899877653221 11111111 11111166667777643 3588999988774332110
Q ss_pred C-----------------------CCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeC--C-CCceEEccCCCCCC
Q 016421 222 H-----------------------SPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDL--E-TRKWRKIEGMYPNV 273 (390)
Q Consensus 222 ~-----------------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~--~-~~~W~~~~~~~~~~ 273 (390)
. ........+.. +++..++++.. ...+..||. . ..++..+..+....
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~-----d~~i~iw~~~~~~~~~l~~~~~~~~~~ 355 (450)
T 2vdu_B 281 NSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA-----TKCIIILEMSEKQKGDLALKQIITFPY 355 (450)
T ss_dssp HHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT-----CSEEEEEEECSSSTTCEEEEEEEECSS
T ss_pred hhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC-----CCeEEEEEeccCCCCceeeccEeccCC
Confidence 0 00011112222 34444444321 235777887 3 34555554433321
Q ss_pred CCcCCCCCEEEEECCEEEEEecCC-------C--eEEEEeCCCCceEE
Q 016421 274 NRAAQAPPLVAVVDNQLYAVEYLT-------N--MVKKYDKLKNTWDV 312 (390)
Q Consensus 274 ~~~~~~~~~~~~~~g~l~v~gg~~-------~--~v~~yd~~~~~W~~ 312 (390)
....++...+.+++..+.. + .++.++.+++.|..
T Consensus 356 -----~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~~ 398 (450)
T 2vdu_B 356 -----NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVV 398 (450)
T ss_dssp -----CEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEEE
T ss_pred -----ceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEEE
Confidence 1123555667777765432 2 66777888888863
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.08 E-value=15 Score=33.32 Aligned_cols=152 Identities=10% Similarity=0.022 Sum_probs=77.4
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
+.+++.|+. ...+.+||..+.+-...-..+........+.+ ++..++.|+.++ .+.+||..++.....-.
T Consensus 182 ~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~ 253 (437)
T 3gre_A 182 KSLLVALTN--LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG------IIDIWDIRFNVLIRSWS 253 (437)
T ss_dssp CEEEEEEET--TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS------CEEEEETTTTEEEEEEB
T ss_pred CCEEEEEeC--CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC------eEEEEEcCCccEEEEEe
Confidence 556666653 46789999987654222111101111222222 566777776543 48899998876533111
Q ss_pred CCCCCcCceEE-EE-----CCEEEEEecccCCCccCceEEEEeCCCCceEEc-cCC---CC-------C-------CC--
Q 016421 221 MHSPRRLCSGF-FM-----DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKI-EGM---YP-------N-------VN-- 274 (390)
Q Consensus 221 ~~~~r~~~~~~-~~-----~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~---~~-------~-------~~-- 274 (390)
.+.. .....+ .. ++.+.+.|+.+ ..+..||..+.+-... ... +. . ..
T Consensus 254 ~~~~-~~v~~~~~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 326 (437)
T 3gre_A 254 FGDH-APITHVEVCQFYGKNSVIVVGGSSK------TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGI 326 (437)
T ss_dssp CTTC-EEEEEEEECTTTCTTEEEEEEESTT------EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCC
T ss_pred cCCC-CceEEEEeccccCCCccEEEEEcCC------CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccc
Confidence 1111 111111 11 24455555433 2477788877653221 100 00 0 00
Q ss_pred CcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc
Q 016421 275 RAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 275 ~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
.+......++..++++++.|+..+.|.+||..+.+
T Consensus 327 ~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 327 RSLNALSTISVSNDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp CSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGG
T ss_pred ccCCceEEEEECCceEEEecCCCCeEEEEECCCcc
Confidence 00111223455588888888888999999988765
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=88.02 E-value=14 Score=32.84 Aligned_cols=201 Identities=11% Similarity=-0.068 Sum_probs=96.4
Q ss_pred eCCEEEEEccc-ccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCC-EEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016421 141 VGSELLVFGRE-LFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGS-IAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 141 ~~~~iy~~Gg~-~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
.+++.+++... .....++++|+.+++-..+...+..........-++ .|+.... ...++++|+.+++-+.+
T Consensus 45 pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~-------~~~l~~~d~~~g~~~~~ 117 (388)
T 3pe7_A 45 RDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD-------GRNLMRVDLATLEENVV 117 (388)
T ss_dssp TTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET-------TTEEEEEETTTCCEEEE
T ss_pred CCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC-------CCeEEEEECCCCcceee
Confidence 34443333332 334579999999988877655432221111222244 4544432 13688999998876655
Q ss_pred CCCCCCCcCceEEE--ECCEEEEEecccC----------------CCccCceEEEEeCCCCceEEccCCCCCCCCcCCCC
Q 016421 219 PSMHSPRRLCSGFF--MDGKFYVIGGMSS----------------PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAP 280 (390)
Q Consensus 219 ~~~~~~r~~~~~~~--~~~~iyv~GG~~~----------------~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 280 (390)
...+.......... -+++.++...... .......++.+|+.+++-..+...... ..
T Consensus 118 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~------~~ 191 (388)
T 3pe7_A 118 YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQW------LG 191 (388)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSC------EE
T ss_pred eechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCcc------cc
Confidence 44443321111111 2444333211000 011235788999998876655432211 00
Q ss_pred CEEEEE-CCEEEEE-e-cC----CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCE-EEEEcCCCCCCCCeEE
Q 016421 281 PLVAVV-DNQLYAV-E-YL----TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNE-LLVVGGQRGPEGENVV 352 (390)
Q Consensus 281 ~~~~~~-~g~l~v~-g-g~----~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~~~ 352 (390)
.....- +|+.+++ . +. ...++.+|.++.....+........ .......-+|+ |+.+....+. ....
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~----~~~~~~spdg~~l~~~~~~~~~--~~~~ 265 (388)
T 3pe7_A 192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGES----CTHEFWVPDGSALVYVSYLKGS--PDRF 265 (388)
T ss_dssp EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEE----EEEEEECTTSSCEEEEEEETTC--CCEE
T ss_pred ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcc----cccceECCCCCEEEEEecCCCC--Ccce
Confidence 112222 4553333 2 11 4589999998877766654221100 00111122444 5444432221 1235
Q ss_pred EeeecCCC
Q 016421 353 LNSWCPKS 360 (390)
Q Consensus 353 i~~y~~~~ 360 (390)
|++||+++
T Consensus 266 l~~~d~~~ 273 (388)
T 3pe7_A 266 IYSADPET 273 (388)
T ss_dssp EEEECTTT
T ss_pred EEEEecCC
Confidence 88999987
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=87.89 E-value=2.9 Score=38.74 Aligned_cols=144 Identities=9% Similarity=-0.020 Sum_probs=78.9
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEE---
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE--- 216 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~--- 216 (390)
++.||+.-.. ..+.++|+.++....+... ..+ ..++++ -++.||+....... ....+..++.. +.|.
T Consensus 149 ~g~Lyv~d~~---~~I~~id~~~~~v~~~~~~-~~~-P~~ia~d~~G~~lyvad~~~~~--~~~~v~~~~~~-g~~~~~~ 220 (430)
T 3tc9_A 149 HNHLYLVGEQ---HPTRLIDFEKEYVSTVYSG-LSK-VRTICWTHEADSMIITNDQNNN--DRPNNYILTRE-SGFKVIT 220 (430)
T ss_dssp EEEEEEEEBT---EEEEEEETTTTEEEEEECC-CSC-EEEEEECTTSSEEEEEECCSCT--TSEEEEEEEGG-GTSCSEE
T ss_pred CCeEEEEeCC---CcEEEEECCCCEEEEEecC-CCC-cceEEEeCCCCEEEEEeCCCCc--ccceEEEEeCC-Cceeeee
Confidence 3678876532 6889999999887665431 111 112222 23459998653321 12345666653 3332
Q ss_pred EcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECC-EEEE
Q 016421 217 MLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDN-QLYA 292 (390)
Q Consensus 217 ~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g-~l~v 292 (390)
.++.+..+ +..++. +|.||+.-- ....+++||+.+..-..+...+... ....+++ -+| .||+
T Consensus 221 ~l~~~~~p---~giavdp~~g~lyv~d~------~~~~V~~~~~~~~~~~~~~~~~~~~-----~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 221 ELTKGQNC---NGAETHPINGELYFNSW------NAGQVFRYDFTTQETTPLFTIQDSG-----WEFHIQFHPSGNYAYI 286 (430)
T ss_dssp EEEECSSC---CCEEECTTTCCEEEEET------TTTEEEEEETTTTEEEEEEECSSSS-----CCEEEEECTTSSEEEE
T ss_pred eeccCCCc---eEEEEeCCCCEEEEEEC------CCCEEEEEECCCCcEEEEEEcCCCC-----cceeEEEcCCCCEEEE
Confidence 33322222 334433 678998732 2346899999877653333222210 1112333 244 4999
Q ss_pred EecCCCeEEEEeCCC
Q 016421 293 VEYLTNMVKKYDKLK 307 (390)
Q Consensus 293 ~gg~~~~v~~yd~~~ 307 (390)
.....+.|+++|.+.
T Consensus 287 ~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 287 VVVNQHYILRSDYDW 301 (430)
T ss_dssp EETTTTEEEEEEEET
T ss_pred EECCCCEEEEEeCCc
Confidence 988888999977653
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=87.61 E-value=15 Score=32.66 Aligned_cols=153 Identities=8% Similarity=-0.081 Sum_probs=75.3
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeee--CCE-EEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEE
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSI-AIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGF 231 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~ 231 (390)
..++++|..+..+..+.. ..+........+ +++ |++.....+ .....++++|+.+++.+.+...+. .. ...
T Consensus 216 ~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~~l~~~d~~~g~~~~l~~~~~--~~-~~~ 289 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIKE-HAEGESCTHEFWIPDGSAMAYVSYFKG--QTDRVIYKANPETLENEEVMVMPP--CS-HLM 289 (396)
T ss_dssp CCCEEEETTSCCCEESSC-CCTTEEEEEEEECTTSSCEEEEEEETT--TCCEEEEEECTTTCCEEEEEECCS--EE-EEE
T ss_pred ceEEEEECCCCceeEeec-cCCCccccceEECCCCCEEEEEecCCC--CccceEEEEECCCCCeEEeeeCCC--CC-CCc
Confidence 578999998877766644 211111111222 444 444432221 112459999999888776644332 11 122
Q ss_pred EE-CCEEEEEecccCC----------CccCceEEEEeCCCCceEEccCCCCCC------CCcCCCCCEEEEECC-EEEEE
Q 016421 232 FM-DGKFYVIGGMSSP----------TVSLTCGEEFDLETRKWRKIEGMYPNV------NRAAQAPPLVAVVDN-QLYAV 293 (390)
Q Consensus 232 ~~-~~~iyv~GG~~~~----------~~~~~~v~~yd~~~~~W~~~~~~~~~~------~~~~~~~~~~~~~~g-~l~v~ 293 (390)
.- +|+++++.+.... ......++.+|+.+++...+....... .......+ ...-+| .|+..
T Consensus 290 s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~~ 368 (396)
T 3c5m_A 290 SNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHP-SFTPNDDGVLFT 368 (396)
T ss_dssp ECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCC-EECTTSSEEEEE
T ss_pred cCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCc-eEccCCCeEEEE
Confidence 23 7776666542210 012357889999888765554322100 00000111 222344 45544
Q ss_pred ec--CCCeEEEEeCCCCceEEcc
Q 016421 294 EY--LTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 294 gg--~~~~v~~yd~~~~~W~~v~ 314 (390)
.. ....++.+|..+..++.+.
T Consensus 369 s~~~~~~~l~~~~~~~~~~~~~~ 391 (396)
T 3c5m_A 369 SDFEGVPAIYIADVPESYKHLEH 391 (396)
T ss_dssp ECTTSSCEEEEEECCTTCC----
T ss_pred ecCCCCceEEEEEEccccccccc
Confidence 42 2346888888887777653
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=87.61 E-value=17 Score=33.50 Aligned_cols=108 Identities=10% Similarity=-0.096 Sum_probs=56.8
Q ss_pred ccEEEEEeCC-----CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEccc-------ccCCeEEEEECC
Q 016421 97 EHWVYLVCDP-----RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRE-------LFDFAIWKYSLV 163 (390)
Q Consensus 97 ~~~l~~~~~~-----~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~-------~~~~~~~~yd~~ 163 (390)
...+|+.... ..+..+|+.+.+-. ..++..... ...+.. +..+|+.... ...+.+.++|+.
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv--~~I~vG~~P----gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGSTGRIL--GMTDGGFLP----HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEE--EEEEECSSC----EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCEEEEECCCcCCCCCeEEEEECCCCEEE--EEEECCCCC----ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 3567777532 57888999877542 222221111 112222 4567776421 123578999999
Q ss_pred CCcEeecCCCC-CCC-----cceeee--eeCCEEEEEeccCCCCCccceEEEEECCCCcE
Q 016421 164 FRSWMKCEGMN-HPR-----CLFGSG--SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRW 215 (390)
Q Consensus 164 t~~W~~~~~~~-~~r-----~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (390)
+++-...-+++ ..| ..+.++ .-+..+|+..-. ..+.+.++|..+++=
T Consensus 158 t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~-----~~~~VsVID~~t~kv 212 (426)
T 3c75_H 158 TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS-----PAPAVGVVDLEGKTF 212 (426)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS-----SSCEEEEEETTTTEE
T ss_pred CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC-----CCCeEEEEECCCCeE
Confidence 98753211111 111 112222 235688887321 135688999988764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=87.53 E-value=14 Score=32.39 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=32.2
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCC
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETR 261 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 261 (390)
++.+++.|+.+ ..+.++|..+++.... +.........+.. +++..+.|+.++ .+..||+...
T Consensus 87 ~~~~l~s~s~D------~~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~~~~l~s~~~d~------~i~~wd~~~~ 150 (343)
T 2xzm_R 87 ENCFAISSSWD------KTLRLWDLRTGTTYKR--FVGHQSEVYSVAFSPDNRQILSAGAER------EIKLWNILGE 150 (343)
T ss_dssp STTEEEEEETT------SEEEEEETTSSCEEEE--EECCCSCEEEEEECSSTTEEEEEETTS------CEEEEESSSC
T ss_pred CCCEEEEEcCC------CcEEEEECCCCcEEEE--EcCCCCcEEEEEECCCCCEEEEEcCCC------EEEEEeccCC
Confidence 45555666543 3588899988764321 1111111222222 566666666543 4666787643
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=87.50 E-value=21 Score=34.39 Aligned_cols=184 Identities=13% Similarity=0.089 Sum_probs=92.0
Q ss_pred EEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC-C-
Q 016421 145 LLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP-S- 220 (390)
Q Consensus 145 iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-~- 220 (390)
.++.|+. +..+.+||..+.+... .+.........+.+ ++++++.|+.++ .+.++|..+++....- .
T Consensus 162 ~l~s~s~--D~~v~lwd~~~~~~~~--~l~~H~~~V~~v~fspdg~~las~s~D~------~i~lwd~~~g~~~~~~~~~ 231 (611)
T 1nr0_A 162 RIISGSD--DNTVAIFEGPPFKFKS--TFGEHTKFVHSVRYNPDGSLFASTGGDG------TIVLYNGVDGTKTGVFEDD 231 (611)
T ss_dssp EEEEEET--TSCEEEEETTTBEEEE--EECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEECBCT
T ss_pred EEEEEeC--CCeEEEEECCCCeEee--eeccccCceEEEEECCCCCEEEEEECCC------cEEEEECCCCcEeeeeccc
Confidence 3444443 3567788866544322 12222222222222 567777777543 4788998877654321 1
Q ss_pred -CCC-CCc-CceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec
Q 016421 221 -MHS-PRR-LCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY 295 (390)
Q Consensus 221 -~~~-~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg 295 (390)
+.. .+. ....+.. +++..+.|+.+ ..+..+|+.+.+....-...... . .....+..++..++.++
T Consensus 232 ~~~~~~h~~~V~~v~~spdg~~l~s~s~D------~~v~lWd~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l~s~s 301 (611)
T 1nr0_A 232 SLKNVAHSGSVFGLTWSPDGTKIASASAD------KTIKIWNVATLKVEKTIPVGTRI---E-DQQLGIIWTKQALVSIS 301 (611)
T ss_dssp TSSSCSSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECCSSG---G-GCEEEEEECSSCEEEEE
T ss_pred cccccccCCCEEEEEECCCCCEEEEEeCC------CeEEEEeCCCCceeeeecCCCCc---c-ceeEEEEEcCCEEEEEe
Confidence 000 111 1122222 66766766654 35778999887764332211110 0 01123334666666676
Q ss_pred CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 296 LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 296 ~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..+.+..||+.+.+-... +.... ..-.+++. -+++.++.|+.++ .|.+||..+
T Consensus 302 ~d~~i~~~~~~~~~~~~~--~~gh~----~~v~~l~~spdg~~l~s~s~D~------~v~~Wd~~~ 355 (611)
T 1nr0_A 302 ANGFINFVNPELGSIDQV--RYGHN----KAITALSSSADGKTLFSADAEG------HINSWDIST 355 (611)
T ss_dssp TTCCEEEEETTTTEEEEE--ECCCS----SCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred CCCcEEEEeCCCCCcceE--EcCCC----CCEEEEEEeCCCCEEEEEeCCC------cEEEEECCC
Confidence 778899999887653222 11110 11112222 2566666776553 366777765
|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=87.44 E-value=11 Score=30.96 Aligned_cols=148 Identities=10% Similarity=0.059 Sum_probs=78.2
Q ss_pred eEEEeCCEEEEEcccccCCeEEEEECCCCcEe--ec----CCCCCCCcceeee-ee--CCEEEEEeccCCCCCccceEEE
Q 016421 137 ESLAVGSELLVFGRELFDFAIWKYSLVFRSWM--KC----EGMNHPRCLFGSG-SL--GSIAIIAGGSDKNGHVLKSAEL 207 (390)
Q Consensus 137 ~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~--~~----~~~~~~r~~~~~~-~~--~~~lyv~GG~~~~~~~~~~~~~ 207 (390)
++...++.+|+|-| ..+|+++.....+. .+ +.+|. ...++ .. ++++|+|-| +.+|+
T Consensus 28 Ai~~~~g~~y~Fkg----~~~wr~~~~~~~~~p~~I~~~wp~Lp~---~iDAa~~~~~~~~iyfFkG--------~~~w~ 92 (207)
T 1pex_A 28 AITSLRGETMIFKD----RFFWRLHPQQVDAELFLTKSFWPELPN---RIDAAYEHPSHDLIFIFRG--------RKFWA 92 (207)
T ss_dssp EEEEETTEEEEEET----TEEEEECSSSSCCEEEEHHHHCTTSCS---SCCEEEEETTTTEEEEEET--------TEEEE
T ss_pred EEEeCCCcEEEEEC----CEEEEEeCCCcCCCceehhHhccCCCC---CccEEEEeccCCcEEEEcc--------CEEEE
Confidence 34457889999876 35677766543321 11 23332 22222 22 589999966 34677
Q ss_pred EECCCCcE---EEcCCCCCCC--cCceEEEE---CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCC----CC
Q 016421 208 YDSTTGRW---EMLPSMHSPR--RLCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNV----NR 275 (390)
Q Consensus 208 yd~~t~~W---~~~~~~~~~r--~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~----~~ 275 (390)
|+..+-.- +.+..+..+. ...-+|.. ++++|++-| +..++||..+++=. +.-|... ..
T Consensus 93 ~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG--------~~ywr~d~~~~~~d--~gyPr~i~~~~~G 162 (207)
T 1pex_A 93 LNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG--------NQVWRYDDTNHIMD--KDYPRLIEEDFPG 162 (207)
T ss_dssp ESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET--------TEEEEEETTTTEEC--SSCCCBHHHHSTT
T ss_pred EeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC--------CEEEEEeCcCcccc--CCCCccHHHcCCC
Confidence 76432111 2333322221 12233332 589999955 34788998765311 1111100 00
Q ss_pred cCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceE
Q 016421 276 AAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWD 311 (390)
Q Consensus 276 ~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~ 311 (390)
.+...-++...+|.+|.+-| +..++||..+++=.
T Consensus 163 ip~~iDaAf~~~g~~YfFkg--~~y~rf~~~~~~v~ 196 (207)
T 1pex_A 163 IGDKVDAVYEKNGYIYFFNG--PIQFEYSIWSNRIV 196 (207)
T ss_dssp SCSCCSEEEEETTEEEEEET--TEEEEEETTTTEEE
T ss_pred CCCCccEEEEcCCcEEEEEC--CEEEEEeCCccEEe
Confidence 01112245557899999965 58999998776533
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.29 E-value=12 Score=32.01 Aligned_cols=135 Identities=16% Similarity=0.148 Sum_probs=71.0
Q ss_pred ceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCC
Q 016421 203 KSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAP 280 (390)
Q Consensus 203 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 280 (390)
+++.++|..+++...+-.+..+...-..+.. +++..+.|+.++ .+..+|..+++-........ ..
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg------~v~iw~~~~~~~~~~~~~h~-------~~ 111 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNMTSHS-------AR 111 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS------EEEEEETTTTEEEEEEECCS-------SC
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCC------cEEEeecCCceeEEEecCcc-------ce
Confidence 4588999999887654333322222223332 667777776543 47778988876432211111 11
Q ss_pred CEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 281 PLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 281 ~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
......++.+.+.|+..+.+..++..+....... +...... ........+++.++.|+.++ .|.+||..+
T Consensus 112 ~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~ 181 (318)
T 4ggc_A 112 VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVAT-LSGHSQE---VCGLRWAPDGRHLASGGNDN------LVNVWPSAP 181 (318)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEE-EECCSSC---EEEEEECTTSSEEEEEETTS------CEEEEESSC
T ss_pred EEEeecCCCEEEEEecCCceEeeecCCCceeEEE-EcCccCc---eEEEEEcCCCCEEEEEecCc------ceeEEECCC
Confidence 1234455666777777777878877665433221 1111100 00112223556666666553 367888776
|
| >3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} | Back alignment and structure |
|---|
Probab=85.81 E-value=8 Score=32.23 Aligned_cols=59 Identities=19% Similarity=0.078 Sum_probs=37.7
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEE----cc-CCCcc-----ccCCCcceeEEEE--eCCEEEEEcCCCCCCCCeEEEe
Q 016421 287 DNQLYAVEYLTNMVKKYDKLKNTWDV----LG-RLPVR-----ADLSNGWGLAFKA--CGNELLVVGGQRGPEGENVVLN 354 (390)
Q Consensus 287 ~g~l~v~gg~~~~v~~yd~~~~~W~~----v~-~~~~~-----~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~~~i~ 354 (390)
++++|++-| +..|+||..+++-.. |. .+|.. .. .. -++.. .++++|++-|. ..+
T Consensus 127 ~gk~yfFkG--~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~---~i-DAAf~~~~~g~~YfFkG~--------~yw 192 (225)
T 3oyo_A 127 GKEVYLFKG--NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFES---GI-DACFASHKEPEAYLFKGQ--------NYV 192 (225)
T ss_dssp TTEEEEEET--TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTT---CC-SEEEECSSTTEEEEEETT--------EEE
T ss_pred CCcEEEEeC--CeEEEEECCCCeecCCCcchhhcCCCcccccCCC---Cc-CEEEEeCCCCEEEEEECC--------EEE
Confidence 689999966 589999987765543 22 12211 11 11 23334 48999999984 377
Q ss_pred eecCC
Q 016421 355 SWCPK 359 (390)
Q Consensus 355 ~y~~~ 359 (390)
.||..
T Consensus 193 r~d~~ 197 (225)
T 3oyo_A 193 RIDFT 197 (225)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 88887
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=85.72 E-value=29 Score=34.18 Aligned_cols=145 Identities=12% Similarity=0.003 Sum_probs=80.2
Q ss_pred CCeEEEEECCC------C--cEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCC---cEEEcCCCC
Q 016421 154 DFAIWKYSLVF------R--SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTG---RWEMLPSMH 222 (390)
Q Consensus 154 ~~~~~~yd~~t------~--~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~---~W~~~~~~~ 222 (390)
.+.++++|..+ . .+..+....... ......-++.+|+.+.... ....++++|..+. .|+.+.+-.
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~ 333 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHS---PNYRLINIDFTDPEESKWKVLVPEH 333 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEECCC
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCCC---CCCEEEEEeCCCCCcccceeccCCC
Confidence 56899999876 4 566654322111 1122334678888865432 2457899998876 487764321
Q ss_pred CCCcCceEEEE-CCEEEEEecccCCCccCceEEEEeCCCCc-eEEccCCCCCCCCcCCCCCEEEEE--CC-EEEEEe-c-
Q 016421 223 SPRRLCSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRK-WRKIEGMYPNVNRAAQAPPLVAVV--DN-QLYAVE-Y- 295 (390)
Q Consensus 223 ~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~--~g-~l~v~g-g- 295 (390)
....-...... ++.+++....++ ...++.+|+.+++ ...+.. +.. . ...+.. ++ .+++.. +
T Consensus 334 ~~~~~~~~~~~~~~~lv~~~~~~g----~~~l~~~~~~~g~~~~~l~~-~~~----~---v~~~~~s~d~~~l~~~~ss~ 401 (710)
T 2xdw_A 334 EKDVLEWVACVRSNFLVLCYLHDV----KNTLQLHDLATGALLKIFPL-EVG----S---VVGYSGQKKDTEIFYQFTSF 401 (710)
T ss_dssp SSCEEEEEEEETTTEEEEEEEETT----EEEEEEEETTTCCEEEEECC-CSS----E---EEEEECCTTCSEEEEEEECS
T ss_pred CCCeEEEEEEEcCCEEEEEEEECC----EEEEEEEECCCCCEEEecCC-CCc----e---EEEEecCCCCCEEEEEEeCC
Confidence 11111223445 678887765442 3468889986654 444432 211 0 011111 33 455443 2
Q ss_pred -CCCeEEEEeCCCCc--eEEcc
Q 016421 296 -LTNMVKKYDKLKNT--WDVLG 314 (390)
Q Consensus 296 -~~~~v~~yd~~~~~--W~~v~ 314 (390)
....++.||..+++ .+.+.
T Consensus 402 ~~P~~i~~~d~~tg~~~~~~l~ 423 (710)
T 2xdw_A 402 LSPGIIYHCDLTKEELEPRVFR 423 (710)
T ss_dssp SCCCEEEEEETTSSSCCCEEEE
T ss_pred CCCCEEEEEECCCCccceEEee
Confidence 34689999998877 66554
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=85.53 E-value=5.9 Score=37.98 Aligned_cols=98 Identities=11% Similarity=-0.025 Sum_probs=56.1
Q ss_pred EEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEE
Q 016421 205 AELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVA 284 (390)
Q Consensus 205 ~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 284 (390)
+.+||..++.-+.+...+. ......-+|+..++++.+..+ ...++.+|+.++++..+....... .....
T Consensus 134 ~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~--~~~i~~~d~~~g~~~~l~~~~~~~------~~~~~ 202 (582)
T 3o4h_A 134 VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGG--RVSLFTSNLSSGGLRVFDSGEGSF------SSASI 202 (582)
T ss_dssp EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETT--EEEEEEEETTTCCCEEECCSSCEE------EEEEE
T ss_pred ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCC--CeEEEEEcCCCCCceEeecCCCcc------ccceE
Confidence 3478988888766643332 112223466655555443222 245899999999988775432210 00122
Q ss_pred EECCEEEEEecCCC--eEEEEeCCCCceEEc
Q 016421 285 VVDNQLYAVEYLTN--MVKKYDKLKNTWDVL 313 (390)
Q Consensus 285 ~~~g~l~v~gg~~~--~v~~yd~~~~~W~~v 313 (390)
.-+|+.++.+...+ .|+.||.++++...+
T Consensus 203 SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~ 233 (582)
T 3o4h_A 203 SPGMKVTAGLETAREARLVTVDPRDGSVEDL 233 (582)
T ss_dssp CTTSCEEEEEECSSCEEEEEECTTTCCEEEC
T ss_pred CCCCCEEEEccCCCeeEEEEEcCCCCcEEEc
Confidence 23565444544444 799999999887733
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=85.38 E-value=21 Score=32.23 Aligned_cols=220 Identities=10% Similarity=0.103 Sum_probs=110.9
Q ss_pred ccEEEEEeCCCeeEEEecCC--CceeeCCCCCCCcccCCCCeeEEEe----CCEEEEEcccc-cCCeEEEEECCCCcEee
Q 016421 97 EHWVYLVCDPRGWEAFDPMK--KKWMALPKIPCDECFNHADKESLAV----GSELLVFGREL-FDFAIWKYSLVFRSWMK 169 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~--~~W~~l~~~p~~~~~~~~~~~~~~~----~~~iy~~Gg~~-~~~~~~~yd~~t~~W~~ 169 (390)
+..||+.. ...+..++... .+|..+.+..... ....++. .+.||+.+... ....+++.+....+|+.
T Consensus 22 ~g~l~vgt-~~Gl~~~~~~~~g~~W~~~~~~~~~~-----~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~ 95 (394)
T 3b7f_A 22 PVMLLVAT-IKGAWFLASDPARRTWELRGPVFLGH-----TIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTE 95 (394)
T ss_dssp CCEEEEEE-TTEEEEEEECTTSCSEEEEEEESTTS-----EEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEE
T ss_pred CCEEEEEe-cCceEEEECCCCCCCceECCccCCCC-----ceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceE
Confidence 34566654 34566777654 6898753111110 1122332 46777765321 11257777777789988
Q ss_pred cCCC---CCCC---------cceeeeee----CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC---CC-------
Q 016421 170 CEGM---NHPR---------CLFGSGSL----GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM---HS------- 223 (390)
Q Consensus 170 ~~~~---~~~r---------~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---~~------- 223 (390)
+... +... ...+++.. .+.+|+.+. ...+++.+-...+|+.+... |.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~ 168 (394)
T 3b7f_A 96 ATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS-------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGG 168 (394)
T ss_dssp CSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE-------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCC
T ss_pred CCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec-------CCcEEEEcCCCCCeEECcCccCCccccccccc
Confidence 7532 1110 11122222 467776542 12367776677789987432 21
Q ss_pred ------CCcCceEEEE----CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCC------CCCCcCCCCCEEEEEC
Q 016421 224 ------PRRLCSGFFM----DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYP------NVNRAAQAPPLVAVVD 287 (390)
Q Consensus 224 ------~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~------~~~~~~~~~~~~~~~~ 287 (390)
.......+.. .+.||+.... ..+++.+-...+|+.+..... ...........++...
T Consensus 169 ~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~-------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~ 241 (394)
T 3b7f_A 169 EQDGTPDGPKMHSILVDPRDPKHLYIGMSS-------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHP 241 (394)
T ss_dssp C----CCCCEEEEEEECTTCTTCEEEEEET-------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECS
T ss_pred cccCCCCCCceeEEEECCCCCCEEEEEECC-------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECC
Confidence 0011122333 2567775432 236777777789998753211 0000001112233321
Q ss_pred ---CEEEEEecCCCeEEEEeCCCCceEEccC-CCccccCCCcceeEEEE---eCCEEEEEc
Q 016421 288 ---NQLYAVEYLTNMVKKYDKLKNTWDVLGR-LPVRADLSNGWGLAFKA---CGNELLVVG 341 (390)
Q Consensus 288 ---g~l~v~gg~~~~v~~yd~~~~~W~~v~~-~~~~~~~~~~~~~~~~~---~~~~lyv~G 341 (390)
+.||+.. ...|++++-...+|+.+.. ++.... .++..+.. ..+.||+..
T Consensus 242 ~~~~~l~vg~--~~gl~~s~D~G~tW~~~~~~l~~~~~---~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 242 AAPDILYQQN--HCGIYRMDRREGVWKRIGDAMPREVG---DIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp SSTTEEEEEE--TTEEEEEETTTTEEECGGGGSCTTTC---SCEEEEEECSSCTTCEEEEE
T ss_pred CCCCEEEEEc--CCeEEEeCCCCCcceECCCCCCCCCc---cceEEEEECCCCCCEEEEEe
Confidence 6777753 3568888888899999864 443110 11233333 246788864
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=84.83 E-value=4.3 Score=37.58 Aligned_cols=144 Identities=10% Similarity=0.027 Sum_probs=77.8
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CC-EEEEEecccCCCccCceEEEEeCCCCc
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DG-KFYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
++.||+.--. ..+.++|+.++..+.+.. .......+.+ ++ .||+....... ....+..++.. ..
T Consensus 149 ~g~Lyv~d~~-------~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~--~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 149 HNHLYLVGEQ-------HPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEADSMIITNDQNNN--DRPNNYILTRE-SG 215 (430)
T ss_dssp EEEEEEEEBT-------EEEEEEETTTTEEEEEEC---CCSCEEEEEECTTSSEEEEEECCSCT--TSEEEEEEEGG-GT
T ss_pred CCeEEEEeCC-------CcEEEEECCCCEEEEEec---CCCCcceEEEeCCCCEEEEEeCCCCc--ccceEEEEeCC-Cc
Confidence 4788988431 678999999988776643 1112233333 34 48988543221 12345556653 33
Q ss_pred eE---EccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEE
Q 016421 263 WR---KIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNEL 337 (390)
Q Consensus 263 W~---~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~l 337 (390)
|. .++.+.. ...+++. +|.||+.....+.|++||+.+..-..+...+..... .+.++...++.|
T Consensus 216 ~~~~~~l~~~~~--------p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P---~gia~~pdG~~l 284 (430)
T 3tc9_A 216 FKVITELTKGQN--------CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWE---FHIQFHPSGNYA 284 (430)
T ss_dssp SCSEEEEEECSS--------CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCC---EEEEECTTSSEE
T ss_pred eeeeeeeccCCC--------ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcc---eeEEEcCCCCEE
Confidence 32 2222111 1224443 689999987778999999988765343333221111 112221224459
Q ss_pred EEEcCCCCCCCCeEEEeeecCC
Q 016421 338 LVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 338 yv~GG~~~~~~~~~~i~~y~~~ 359 (390)
|+..... ..|++++++
T Consensus 285 yv~d~~~------~~I~~~~~d 300 (430)
T 3tc9_A 285 YIVVVNQ------HYILRSDYD 300 (430)
T ss_dssp EEEETTT------TEEEEEEEE
T ss_pred EEEECCC------CEEEEEeCC
Confidence 9986432 146666654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=84.72 E-value=21 Score=35.16 Aligned_cols=144 Identities=13% Similarity=0.066 Sum_probs=80.3
Q ss_pred CCeEEEEECCCC--cEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCC---cEEEcCCCCCCCcCc
Q 016421 154 DFAIWKYSLVFR--SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTG---RWEMLPSMHSPRRLC 228 (390)
Q Consensus 154 ~~~~~~yd~~t~--~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~---~W~~~~~~~~~r~~~ 228 (390)
.+.++++|..+. .|..+..-..... ......++.+|+....+. ....+...|+.+. .|+.+.+-.... .
T Consensus 258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l~~~t~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~~~~--~ 331 (693)
T 3iuj_A 258 GNRLYVKDLSQENAPLLTVQGDLDADV-SLVDNKGSTLYLLTNRDA---PNRRLVTVDAANPGPAHWRDLIPERQQV--L 331 (693)
T ss_dssp CCEEEEEETTSTTCCCEEEECSSSSCE-EEEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEECCCSSC--E
T ss_pred CcEEEEEECCCCCCceEEEeCCCCceE-EEEeccCCEEEEEECCCC---CCCEEEEEeCCCCCccccEEEecCCCCE--E
Confidence 358899997665 5666543221111 123345788988875432 2457889998764 387753322221 2
Q ss_pred eEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-----CCEEEEEe-c--CCCeE
Q 016421 229 SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-----DNQLYAVE-Y--LTNMV 300 (390)
Q Consensus 229 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-----~g~l~v~g-g--~~~~v 300 (390)
.....++.|++....++ ...++.+|........+.. +... .+..+ ++.+++.. + ....+
T Consensus 332 ~~s~~g~~lv~~~~~~g----~~~l~~~d~~g~~~~~l~~-p~~~--------~~~~~~~~~d~~~l~~~~ss~~tP~~l 398 (693)
T 3iuj_A 332 TVHSGSGYLFAEYMVDA----TARVEQFDYEGKRVREVAL-PGLG--------SVSGFNGKHDDPALYFGFENYAQPPTL 398 (693)
T ss_dssp EEEEETTEEEEEEEETT----EEEEEEECTTSCEEEEECC-SSSS--------EEEECCCCTTCSCEEEEEECSSSCCEE
T ss_pred EEEEECCEEEEEEEECC----eeEEEEEECCCCeeEEeec-CCCc--------eEEeeecCCCCCEEEEEecCCCCCCEE
Confidence 33345667666543332 3467889988665555532 2210 11111 23444443 2 23789
Q ss_pred EEEeCCCCceEEccCC
Q 016421 301 KKYDKLKNTWDVLGRL 316 (390)
Q Consensus 301 ~~yd~~~~~W~~v~~~ 316 (390)
+.||..+++++.+...
T Consensus 399 ~~~d~~~g~~~~l~~~ 414 (693)
T 3iuj_A 399 YRFEPKSGAISLYRAS 414 (693)
T ss_dssp EEECTTTCCEEEEECC
T ss_pred EEEECCCCeEEEEEeC
Confidence 9999999888876543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=84.37 E-value=33 Score=33.68 Aligned_cols=186 Identities=11% Similarity=-0.015 Sum_probs=94.8
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCC-------CccceEEEEECCCCcE--EEcCCCCCC
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNG-------HVLKSAELYDSTTGRW--EMLPSMHSP 224 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~-------~~~~~~~~yd~~t~~W--~~~~~~~~~ 224 (390)
..++++|..+++......++.... ...+. -+++.++++..+... .....+++++..++.- +.+...+..
T Consensus 147 ~~i~v~dl~tg~~~~~~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~ 225 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKVDVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD 225 (695)
T ss_dssp CEEEEEETTTCCBCSSCCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC
T ss_pred EEEEEEECCCCCCcCCcccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC
Confidence 589999999987641111221111 12222 255555555443221 1356699999887763 223222222
Q ss_pred -CcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec---CCCe
Q 016421 225 -RRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY---LTNM 299 (390)
Q Consensus 225 -r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg---~~~~ 299 (390)
....+... -+|+..++...... ....++.+|..+..|..+...... ....+..+|.+|+... ....
T Consensus 226 ~~~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~~~-------~~~~~~~~g~l~~~s~~~~~~~~ 296 (695)
T 2bkl_A 226 PTTFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKGVGA-------KYEVHAWKDRFYVLTDEGAPRQR 296 (695)
T ss_dssp TTCEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEECSSC-------CEEEEEETTEEEEEECTTCTTCE
T ss_pred CEEEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecCCCc-------eEEEEecCCcEEEEECCCCCCCE
Confidence 11122222 25654444433321 234677778777788877543221 1122335677655543 3478
Q ss_pred EEEEeCCCCc---eEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016421 300 VKKYDKLKNT---WDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 300 v~~yd~~~~~---W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
|+.+|.++.+ |..+..-..... -..+...+++|++....++ ...++.++++
T Consensus 297 l~~~d~~~~~~~~~~~l~~~~~~~~-----l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~ 350 (695)
T 2bkl_A 297 VFEVDPAKPARASWKEIVPEDSSAS-----LLSVSIVGGHLSLEYLKDA----TSEVRVATLK 350 (695)
T ss_dssp EEEEBTTBCSGGGCEEEECCCSSCE-----EEEEEEETTEEEEEEEETT----EEEEEEEETT
T ss_pred EEEEeCCCCCccCCeEEecCCCCCe-----EEEEEEECCEEEEEEEECC----EEEEEEEeCC
Confidence 9999987754 887643211110 0123334888887775442 2346666653
|
| >1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=84.21 E-value=15 Score=29.71 Aligned_cols=143 Identities=13% Similarity=0.132 Sum_probs=76.5
Q ss_pred EEEeCCEEEEEcccccCCeEEEEECCCC--cE--eec----CCCCCCCcceeeee-e--CCEEEEEeccCCCCCccceEE
Q 016421 138 SLAVGSELLVFGRELFDFAIWKYSLVFR--SW--MKC----EGMNHPRCLFGSGS-L--GSIAIIAGGSDKNGHVLKSAE 206 (390)
Q Consensus 138 ~~~~~~~iy~~Gg~~~~~~~~~yd~~t~--~W--~~~----~~~~~~r~~~~~~~-~--~~~lyv~GG~~~~~~~~~~~~ 206 (390)
+...++.+|+|-|. .+|+++.... .. ..+ +.+|.. ..++. . ++++|+|-| +..|
T Consensus 12 i~~~~g~~yfFkg~----~~Wr~~~~~~~~~~~p~~Is~~w~glP~~---IDAa~~~~~~~~~yfFkG--------~~yw 76 (195)
T 1itv_A 12 IAEIGNQLYLFKDG----KYWRFSEGRGSRPQGPFLIADKWPALPRK---LDSVFEEPLSKKLFFFSG--------RQVW 76 (195)
T ss_dssp EEEETTEEEEEETT----EEEEECCSSSCCCEEEEEHHHHCTTSCSS---CSEEEECTTTCCEEEEET--------TEEE
T ss_pred EEEeCCEEEEEECC----EEEEEECCccccCCCcEEhhhccCCCCCC---ccEEEEECCCCeEEEEeC--------CEEE
Confidence 45578999998763 5777776542 11 111 233432 22232 2 688999966 3367
Q ss_pred EEECCCCcE-EEcCC--CCCCCcCceEEE--ECCEEEEEecccCCCccCceEEEEeCCCCceE-----Ecc-CCCCCCCC
Q 016421 207 LYDSTTGRW-EMLPS--MHSPRRLCSGFF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR-----KIE-GMYPNVNR 275 (390)
Q Consensus 207 ~yd~~t~~W-~~~~~--~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-----~~~-~~~~~~~~ 275 (390)
+|+..+-.- +.+.. +|......-+|. .++++|++-|. ..++||..+++=. .+. ..+. .
T Consensus 77 ~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg~--------~ywr~d~~~~~~~~gyPr~i~~~w~G-v-- 145 (195)
T 1itv_A 77 VYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR--------RLWRFDVKAQMVDPRSASEVDRMFPG-V-- 145 (195)
T ss_dssp EEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT--------EEEEEETTTTEECGGGCEEHHHHSTT-S--
T ss_pred EEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeCC--------EEEEEeCCcccccCCCccChhhcCCC-C--
Confidence 776432110 11222 222111222333 37899999552 4688998775421 111 1111 0
Q ss_pred cCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc
Q 016421 276 AAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 276 ~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
+...-++...+|.+|.+-| +..++||..+..
T Consensus 146 -p~~idaa~~~~g~~Yffkg--~~y~~~~~~~~~ 176 (195)
T 1itv_A 146 -PLDTHDVFQFREKAYFCQD--RFYWRVSSRSEL 176 (195)
T ss_dssp -CSSCSEEEEETTEEEEEET--TEEEEEECCTTC
T ss_pred -CCCCCEEEEeCCeEEEEeC--CEEEEEECCccE
Confidence 1112245566899999966 578999987765
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=83.97 E-value=34 Score=33.59 Aligned_cols=71 Identities=13% Similarity=-0.021 Sum_probs=38.6
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCC---cEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcE
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSLVFR---SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRW 215 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~---~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (390)
+..+++.++++.. ..++++|..++ .-..+...... .......-+++.++++.. ..++++|..++..
T Consensus 116 ~SpDg~~l~~~~~---~~i~~~d~~~~~~~~~~~l~~~~~~-~~~~~~SPDG~~la~~~~-------~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 116 WSPDAQRLLFPLG---GELYLYDLKQEGKAAVRQLTHGEGF-ATDAKLSPKGGFVSFIRG-------RNLWVIDLASGRQ 184 (741)
T ss_dssp ECTTSSEEEEEET---TEEEEEESSSCSTTSCCBCCCSSSC-EEEEEECTTSSEEEEEET-------TEEEEEETTTTEE
T ss_pred ECCCCCEEEEEeC---CcEEEEECCCCCcceEEEcccCCcc-cccccCCCCCCEEEEEeC-------CcEEEEecCCCCE
Confidence 3445554444433 68999999887 54443322111 111111224554444321 2699999999887
Q ss_pred EEcCC
Q 016421 216 EMLPS 220 (390)
Q Consensus 216 ~~~~~ 220 (390)
..+..
T Consensus 185 ~~~~~ 189 (741)
T 2ecf_A 185 MQLTA 189 (741)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 76643
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=83.70 E-value=22 Score=31.16 Aligned_cols=181 Identities=12% Similarity=0.016 Sum_probs=100.4
Q ss_pred CCEEEEEcccccCCeEEEEECCCCc---EeecCCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEE
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRS---WMKCEGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE 216 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~---W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~ 216 (390)
++.||..-- ....++++++.... +.....+..+ .+.++ .++.||+.-.. ...++++++....-+
T Consensus 46 ~~~lyw~D~--~~~~I~r~~~~g~~~~~~~~~~~l~~p---~glavd~~~g~ly~~d~~------~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 46 HGLIYWSDV--SEEAIKRTEFNKTESVQNVVVSGLLSP---DGLACDWLGEKLYWTDSE------TNRIEVSNLDGSLRK 114 (318)
T ss_dssp GTEEEEEET--TTTEEEEEETTSSSCCCEEEEECCSCC---CEEEEETTTTEEEEEETT------TTEEEEEETTSCSCE
T ss_pred CCEEEEEEC--CCCcEEEEEccCCCceEEEEcCCCCCc---cEEEEEcCCCeEEEEECC------CCEEEEEECCCCcEE
Confidence 477887642 24578888887652 2111222222 13333 47899998432 356889998755433
Q ss_pred EcCCCCCCCcCceEEEE---CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEE
Q 016421 217 MLPSMHSPRRLCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLY 291 (390)
Q Consensus 217 ~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~ 291 (390)
.+.. .....+..+++ +|.||+.--. ....|+++++....=+.+..... .....+++- +++||
T Consensus 115 ~l~~--~~~~~P~giavdp~~g~ly~td~~-----~~~~I~r~~~dG~~~~~~~~~~l------~~Pnglavd~~~~~lY 181 (318)
T 3sov_A 115 VLFW--QELDQPRAIALDPSSGFMYWTDWG-----EVPKIERAGMDGSSRFIIINSEI------YWPNGLTLDYEEQKLY 181 (318)
T ss_dssp EEEC--SSCSSEEEEEEEGGGTEEEEEECS-----SSCEEEEEETTSCSCEEEECSSC------SCEEEEEEETTTTEEE
T ss_pred EEEe--CCCCCccEEEEeCCCCEEEEEecC-----CCCEEEEEEcCCCCeEEEEECCC------CCccEEEEeccCCEEE
Confidence 3311 11112233333 5899997311 13568889886543233211110 011134543 78999
Q ss_pred EEecCCCeEEEEeCCCCceEEccC--CCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 292 AVEYLTNMVKKYDKLKNTWDVLGR--LPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 292 v~gg~~~~v~~yd~~~~~W~~v~~--~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.+...+.|+++|++...=+.+.. +..+ .++++.++.||+..-.. ..|.++++.+
T Consensus 182 ~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P--------~glav~~~~lywtd~~~------~~V~~~~~~~ 238 (318)
T 3sov_A 182 WADAKLNFIHKSNLDGTNRQAVVKGSLPHP--------FALTLFEDILYWTDWST------HSILACNKYT 238 (318)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECSCCSCE--------EEEEEETTEEEEEETTT------TEEEEEETTT
T ss_pred EEECCCCEEEEEcCCCCceEEEecCCCCCc--------eEEEEeCCEEEEEecCC------CeEEEEECCC
Confidence 999888999999987654444432 1111 34556788999985422 2477777755
|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
Probab=83.66 E-value=28 Score=32.40 Aligned_cols=175 Identities=13% Similarity=0.179 Sum_probs=91.5
Q ss_pred CCEEEEEcccccCCeEEEEECCCCc--E-eec----CCCCCCCcceeeee-------eCCEEEEEeccCCCCCccceEEE
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRS--W-MKC----EGMNHPRCLFGSGS-------LGSIAIIAGGSDKNGHVLKSAEL 207 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~--W-~~~----~~~~~~r~~~~~~~-------~~~~lyv~GG~~~~~~~~~~~~~ 207 (390)
++++|+|-| +.+|+|+-.... . +.+ +-+|. ...++. .++++|++-| +..|.
T Consensus 107 ~g~~yfFkG----~~yW~~~~~~~~~GYPk~I~~~fpGlp~---~IDAA~~~~~~~~~~~~~yfFkG--------~~yw~ 171 (460)
T 1qhu_A 107 HTSVYLIKG----DKVWVYTSEKNEKVYPKSLQDEFPGIPF---PLDAAVECHRGECQDEGILFFQG--------NRKWF 171 (460)
T ss_dssp TTEEEEEET----TEEEEECC-------CEEHHHHSTTCCS---SCCEEEEECBBTBSSSEEEEEET--------TEEEE
T ss_pred CCcEEEEec----cEEEEEeCCcccCCCCeEhhhccCCCCC---CeeEEEECCccCCCCCeEEEEec--------ccEEE
Confidence 589999877 367777533211 0 111 12222 122332 2678898866 24789
Q ss_pred EECCCCcEEEc--CCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc------------eEEccCCC---
Q 016421 208 YDSTTGRWEML--PSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK------------WRKIEGMY--- 270 (390)
Q Consensus 208 yd~~t~~W~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~------------W~~~~~~~--- 270 (390)
||..+++...- +.++. --++...+|++|++-|. ..++||..+.+ |..++...
T Consensus 172 yd~~~~~~~~~~w~gi~~---iDAA~~~~g~~YfFkG~--------~y~rfd~~~~~v~~gyPk~is~~w~~c~~~g~~~ 240 (460)
T 1qhu_A 172 WDLTTGTKKERSWPAVGN---CTSALRWLGRYYCFQGN--------QFLRFNPVSGEVPPGYPLDVRDYFLSCPGRGHRS 240 (460)
T ss_dssp EETTTTEEEEECCTTSCC---CSEEEEETTEEEEEETT--------EEEEECTTTCCCCTTCCEEHHHHTSCCTTCCSCC
T ss_pred EecccceeecccCCCCCc---cchheeeCCceEEEECC--------EEEEEcCccCcccCCCCcchhhcccCCCCCCCcc
Confidence 99987765431 22332 23444568999999664 35678776543 21111100
Q ss_pred -----------CCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEE--cc----CCCccccCCCcceeEEEE
Q 016421 271 -----------PNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDV--LG----RLPVRADLSNGWGLAFKA 332 (390)
Q Consensus 271 -----------~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~--v~----~~~~~~~~~~~~~~~~~~ 332 (390)
+..+......-++.. .+|++|.+-| +..+++|...+.+.. |. .+|... -++..
T Consensus 241 ~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg--~~yWR~~~~~~~~~p~~Is~~WpglP~~I-------DAAf~ 311 (460)
T 1qhu_A 241 SHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSG--SHYWRLDTNRDGWHSWPIAHQWPQGPSTV-------DAAFS 311 (460)
T ss_dssp -------CCCTTTTTCTTCCCCEEEECTTCCEEEEET--TEEEECTTGGGCCCCEEGGGTCTTSCSSC-------SEEEE
T ss_pred ccccCCccccccccccCCCCcCEEEecCCCeEEEEeC--CEEEEEecCCCCcCccchhhhccCCCCCC-------cEEEE
Confidence 000000011223333 4689999965 578888875543321 21 233222 23445
Q ss_pred eCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016421 333 CGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 333 ~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
.++++|+|-|.. +++|+..
T Consensus 312 ~~~~~yfFkG~~--------yw~f~~~ 330 (460)
T 1qhu_A 312 WEDKLYLIQDTK--------VYVFLTK 330 (460)
T ss_dssp ETTEEEEEETTE--------EEEEECS
T ss_pred ECCeEEEEeCCE--------EEEEeCC
Confidence 689999998743 6666654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=83.25 E-value=29 Score=34.10 Aligned_cols=147 Identities=8% Similarity=-0.034 Sum_probs=76.3
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc---EEEcCCCCCCCcCceE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR---WEMLPSMHSPRRLCSG 230 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~~~~~r~~~~~ 230 (390)
...++++|..+..++.+..-... ....+.-++.+|+....+. ....++.+|..+.. |+.+-+-.....-...
T Consensus 251 ~~~l~~~~~~~~~~~~l~~~~~~--~~~~~~~~g~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~ 325 (695)
T 2bkl_A 251 ENDVYWKRPGEKDFRLLVKGVGA--KYEVHAWKDRFYVLTDEGA---PRQRVFEVDPAKPARASWKEIVPEDSSASLLSV 325 (695)
T ss_dssp EEEEEEECTTCSSCEEEEECSSC--CEEEEEETTEEEEEECTTC---TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEE
T ss_pred ceEEEEEcCCCCceEEeecCCCc--eEEEEecCCcEEEEECCCC---CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEE
Confidence 35777787767777766432211 1222224556666543321 24678899987765 8776332111111223
Q ss_pred EEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECC-EEEEEec---CCCeEEEEeCC
Q 016421 231 FFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDN-QLYAVEY---LTNMVKKYDKL 306 (390)
Q Consensus 231 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g-~l~v~gg---~~~~v~~yd~~ 306 (390)
...++++++....++ ...++.+|+....-..+. ++...... .. ...-++ .+++... ....++.||..
T Consensus 326 ~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~l~-~~~~~~v~---~~-~~s~d~~~l~~~~ss~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 326 SIVGGHLSLEYLKDA----TSEVRVATLKGKPVRTVQ-LPGVGAAS---NL-MGLEDLDDAYYVFTSFTTPRQIYKTSVS 396 (695)
T ss_dssp EEETTEEEEEEEETT----EEEEEEEETTCCEEEECC-CSSSSEEC---CC-BSCTTCSEEEEEEEETTEEEEEEEEETT
T ss_pred EEECCEEEEEEEECC----EEEEEEEeCCCCeeEEec-CCCCeEEE---Ee-ecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 345888888766543 346778887654444443 22110000 00 001133 4444432 23578999999
Q ss_pred CCceEEcc
Q 016421 307 KNTWDVLG 314 (390)
Q Consensus 307 ~~~W~~v~ 314 (390)
+++.+.+.
T Consensus 397 ~g~~~~l~ 404 (695)
T 2bkl_A 397 TGKSELWA 404 (695)
T ss_dssp TCCEEEEE
T ss_pred CCcEEEEe
Confidence 88876654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=83.03 E-value=30 Score=32.19 Aligned_cols=164 Identities=12% Similarity=-0.019 Sum_probs=78.6
Q ss_pred CCEEEEEcccccCCeEEEEECCCC----cEeecCC---C----CCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEEC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFR----SWMKCEG---M----NHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDS 210 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~----~W~~~~~---~----~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~ 210 (390)
.+++|+-|.. ++.++++|..++ +-...-. + ...+-.+..+.-++ |||..--+..+.....+.++|.
T Consensus 95 r~~l~v~~l~--s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 95 RRFLIVPGLR--SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp SCEEEEEBTT--TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred CCEEEEccCC--CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 5667776653 468999998765 2222110 1 11121222333355 7775322212234578999999
Q ss_pred CCCcEEE-cC--CCCCCCcCceEE-EECCEEEEEec----------ccCCC---ccCceEEEEeCCCCceEEccCCCCCC
Q 016421 211 TTGRWEM-LP--SMHSPRRLCSGF-FMDGKFYVIGG----------MSSPT---VSLTCGEEFDLETRKWRKIEGMYPNV 273 (390)
Q Consensus 211 ~t~~W~~-~~--~~~~~r~~~~~~-~~~~~iyv~GG----------~~~~~---~~~~~v~~yd~~~~~W~~~~~~~~~~ 273 (390)
.|.+=.. ++ ..+... ..... .-++++++... ..... ...+.+.+||..+.+ .++.++...
T Consensus 172 ~T~~v~~~~~~~~~~~~~-~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg~ 248 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYL-AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLGE 248 (462)
T ss_dssp TTCCEEEECCSBCTTCCC-CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESCT
T ss_pred CCCeEEEEEccCCCCccc-cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEecCC
Confidence 9876322 21 111111 11121 22444555442 11110 246789999998763 333332210
Q ss_pred C-CcCCCCCEEEE----ECCEEEEEec-----CCCeEEEEeCCCCceEEcc
Q 016421 274 N-RAAQAPPLVAV----VDNQLYAVEY-----LTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 274 ~-~~~~~~~~~~~----~~g~l~v~gg-----~~~~v~~yd~~~~~W~~v~ 314 (390)
. ..++ .+.. -+..+|+... ..+.|++|..+.++|+.+.
T Consensus 249 ~g~~P~---~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~ 296 (462)
T 2ece_A 249 ENRMAL---ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK 296 (462)
T ss_dssp TEEEEE---EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred CCCccc---eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence 0 0010 0111 1346777766 6667777665567887644
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=82.74 E-value=9.4 Score=34.92 Aligned_cols=63 Identities=10% Similarity=0.115 Sum_probs=35.7
Q ss_pred CCEEEEEecCCCeEEEEeCCCCc-eEEccCCCccccCCCcceeEEEEe---CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 287 DNQLYAVEYLTNMVKKYDKLKNT-WDVLGRLPVRADLSNGWGLAFKAC---GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 287 ~g~l~v~gg~~~~v~~yd~~~~~-W~~v~~~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
++.+++.++..+.|.+||..+.. ...+..+.... .....+.. +..+++.|+.++ .|.+||..+
T Consensus 243 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~v~~i~~~p~~~~~l~tg~~dg------~v~vwd~~~ 309 (430)
T 2xyi_A 243 HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT-----AEVNCLSFNPYSEFILATGSADK------TVALWDLRN 309 (430)
T ss_dssp CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS-----SCEEEEEECSSCTTEEEEEETTS------EEEEEETTC
T ss_pred CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC-----CCeEEEEeCCCCCCEEEEEeCCC------eEEEEeCCC
Confidence 56778888888899999998652 11111111000 01122222 334788887664 477888765
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=81.98 E-value=26 Score=30.72 Aligned_cols=233 Identities=12% Similarity=0.064 Sum_probs=112.1
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCC-C
Q 016421 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN-H 175 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~-~ 175 (390)
...+|+.+....++.-.-.-.+|..+.......... ...+....+.+|+.|. ...+++-.-.-.+|+.+.... .
T Consensus 46 ~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~--~~~i~~~~~~~~~~g~---~g~i~~S~DgG~tW~~~~~~~~~ 120 (327)
T 2xbg_A 46 RHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYR--FNSVSFQGNEGWIVGE---PPIMLHTTDGGQSWSQIPLDPKL 120 (327)
T ss_dssp SSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCE--EEEEEEETTEEEEEEE---TTEEEEESSTTSSCEECCCCTTC
T ss_pred CCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCcc--EEEEEecCCeEEEEEC---CCeEEEECCCCCCceECccccCC
Confidence 344555554444444444456898875321111111 1123334677887653 224444333356898876431 1
Q ss_pred CCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCceE
Q 016421 176 PRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTCG 253 (390)
Q Consensus 176 ~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v 253 (390)
+-....++. -++.+|+.|.. + .+++-+-.-.+|+.+.... +...+.++.. ++.+|++|.. + .+
T Consensus 121 ~~~~~~i~~~~~~~~~~~~~~---g----~v~~S~DgG~tW~~~~~~~-~~~~~~~~~~~~~~~~~~g~~-G------~~ 185 (327)
T 2xbg_A 121 PGSPRLIKALGNGSAEMITNV---G----AIYRTKDSGKNWQALVQEA-IGVMRNLNRSPSGEYVAVSSR-G------SF 185 (327)
T ss_dssp SSCEEEEEEEETTEEEEEETT---C----CEEEESSTTSSEEEEECSC-CCCEEEEEECTTSCEEEEETT-S------SE
T ss_pred CCCeEEEEEECCCCEEEEeCC---c----cEEEEcCCCCCCEEeecCC-CcceEEEEEcCCCcEEEEECC-C------cE
Confidence 222233333 36788887641 1 1333222345798875422 2222333332 5667766522 1 23
Q ss_pred EEE-eCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCC-CCceEEccCC--CccccCCCccee
Q 016421 254 EEF-DLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKL-KNTWDVLGRL--PVRADLSNGWGL 328 (390)
Q Consensus 254 ~~y-d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~-~~~W~~v~~~--~~~~~~~~~~~~ 328 (390)
+.- |..-.+|+.+...... ....++. -++++|+++. .+.++..+.. ..+|+.+... +.... ..
T Consensus 186 ~~S~d~gG~tW~~~~~~~~~------~~~~~~~~~~g~~~~~~~-~G~~~~s~~D~G~tW~~~~~~~~~~~~~-----~~ 253 (327)
T 2xbg_A 186 YSTWEPGQTAWEPHNRTTSR------RLHNMGFTPDGRLWMIVN-GGKIAFSDPDNSENWGELLSPLRRNSVG-----FL 253 (327)
T ss_dssp EEEECTTCSSCEEEECCSSS------CEEEEEECTTSCEEEEET-TTEEEEEETTEEEEECCCBCTTSSCCSC-----EE
T ss_pred EEEeCCCCCceeECCCCCCC------ccceeEECCCCCEEEEeC-CceEEEecCCCCCeeEeccCCcccCCcc-----eE
Confidence 333 3335789987542221 1112222 3578887764 3456666433 5689987532 22110 12
Q ss_pred EEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecc
Q 016421 329 AFKAC-GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAE 374 (390)
Q Consensus 329 ~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~ 374 (390)
+++.. ++.+|++|+.. .++ ...+. ..+|+.+..
T Consensus 254 ~v~~~~~~~~~~~g~~g-------~i~-~S~Dg-----G~tW~~~~~ 287 (327)
T 2xbg_A 254 DLAYRTPNEVWLAGGAG-------ALL-CSQDG-----GQTWQQDVD 287 (327)
T ss_dssp EEEESSSSCEEEEESTT-------CEE-EESST-----TSSCEECGG
T ss_pred EEEecCCCEEEEEeCCC-------eEE-EeCCC-----CcccEEcCc
Confidence 23222 67899988632 122 22222 258998864
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=81.18 E-value=29 Score=34.40 Aligned_cols=146 Identities=10% Similarity=-0.060 Sum_probs=80.2
Q ss_pred CCeEEEEECCCC--c-EeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCC--CcEEEcCCCCCCCcCc
Q 016421 154 DFAIWKYSLVFR--S-WMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTT--GRWEMLPSMHSPRRLC 228 (390)
Q Consensus 154 ~~~~~~yd~~t~--~-W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~~r~~~ 228 (390)
.+.++++|..+. . |+.+......... .....++.+|+...... ....++++|..+ ..|+.+-+-.... -.
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~-~~~~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~l~~~~~~~-l~ 367 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDLKAQWD-FVDGVGDQLWFVSGDGA---PLKKIVRVDLSGSTPRFDTVVPESKDN-LE 367 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSSSSCEE-EEEEETTEEEEEECTTC---TTCEEEEEECSSSSCEEEEEECCCSSE-EE
T ss_pred cceEEEEECCCCCCcccEEecCCCCceEE-EEeccCCEEEEEECCCC---CCCEEEEEeCCCCccccEEEecCCCCe-EE
Confidence 468899998876 6 7766542222211 22235677777754322 245689999887 5788764322111 11
Q ss_pred eEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE--ECC-EEEEEe-c--CCCeEEE
Q 016421 229 SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV--VDN-QLYAVE-Y--LTNMVKK 302 (390)
Q Consensus 229 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~g-~l~v~g-g--~~~~v~~ 302 (390)
.....++++++....++ ...++.+|+....-..+. ++... . ..... -++ .|++.. . ....++.
T Consensus 368 ~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~l~-~~~~~---~---v~~~~~s~d~~~l~~~~ss~~~P~~i~~ 436 (741)
T 1yr2_A 368 SVGIAGNRLFASYIHDA----KSQVLAFDLDGKPAGAVS-LPGIG---S---ASGLSGRPGDRHAYLSFSSFTQPATVLA 436 (741)
T ss_dssp EEEEEBTEEEEEEEETT----EEEEEEEETTSCEEEECB-CSSSC---E---EEEEECCBTCSCEEEEEEETTEEEEEEE
T ss_pred EEEEECCEEEEEEEECC----EEEEEEEeCCCCceeecc-CCCCe---E---EEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 22345888888765543 345788887655444443 12110 0 00111 133 344432 2 2368999
Q ss_pred EeCCCCceEEccC
Q 016421 303 YDKLKNTWDVLGR 315 (390)
Q Consensus 303 yd~~~~~W~~v~~ 315 (390)
||..+++.+.+..
T Consensus 437 ~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 437 LDPATAKTTPWEP 449 (741)
T ss_dssp EETTTTEEEECSC
T ss_pred EECCCCcEEEEec
Confidence 9999988777654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 390 | ||||
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 4e-09 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 1e-08 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 1e-06 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 5e-06 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 9e-05 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 2e-07 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 1e-06 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 2e-06 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.9 bits (130), Expect = 4e-09
Identities = 37/176 (21%), Positives = 50/176 (28%), Gaps = 7/176 (3%)
Query: 94 GIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELF 153
G ++ R D L + G F
Sbjct: 108 GGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG-----FDGTNR 162
Query: 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTG 213
+ Y W MN R G L + AGG D L S E YD T
Sbjct: 163 LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ-LNSVERYDVETE 221
Query: 214 RWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGM 269
W + M R G+ YV+GG T + E +D +T W ++ M
Sbjct: 222 TWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSV-ECYDPDTDTWSEVTRM 276
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.8 bits (127), Expect = 1e-08
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 185 LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMS 244
+G + AGG + L E Y+ + G W L + PR +G + G Y +GG +
Sbjct: 3 VGRLIYTAGGYFRQS--LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 60
Query: 245 SPTVSLTCGEEFDLETRKWRKIEGMYPN 272
+ T D + P
Sbjct: 61 NSPDGNTDSSALDCYNPMTNQWSPCAPM 88
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (111), Expect = 1e-06
Identities = 46/250 (18%), Positives = 72/250 (28%), Gaps = 16/250 (6%)
Query: 109 WEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFG------RELFDFAIWKYSL 162
EA++P W+ L + A VG L G D +
Sbjct: 21 LEAYNPSNGTWLRLADLQV-PRSGLA---GCVVGGLLYAVGGRNNSPDGNTDSSALDCYN 76
Query: 163 VFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH 222
+ + I A G S E Y+ W ++ M
Sbjct: 77 PMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML 136
Query: 223 SPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPL 282
+ R ++ Y +GG T L E + E +WR I M + A
Sbjct: 137 TRRIGVGVAVLNRLLYAVGGF-DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLH 195
Query: 283 VAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGG 342
+ Y + N V++YD TW + + R L + V+GG
Sbjct: 196 NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR-----RSALGITVHQGRIYVLGG 250
Query: 343 QRGPEGENVV 352
G + V
Sbjct: 251 YDGHTFLDSV 260
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (106), Expect = 5e-06
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 157 IWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE 216
+ +Y + +W M H R G + GG D L S E YD T W
Sbjct: 213 VERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYD-GHTFLDSVECYDPDTDTWS 271
Query: 217 MLPSMHSPR 225
+ M S R
Sbjct: 272 EVTRMTSGR 280
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (95), Expect = 9e-05
Identities = 23/158 (14%), Positives = 44/158 (27%), Gaps = 11/158 (6%)
Query: 167 WMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRR 226
R + ++ + + A G + L SAE Y W M+ +M++ R
Sbjct: 128 EWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS 187
Query: 227 LCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV 286
+ Y GG + + V
Sbjct: 188 GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGI------TVH 241
Query: 287 DNQLYAV-----EYLTNMVKKYDKLKNTWDVLGRLPVR 319
++Y + + V+ YD +TW + R+
Sbjct: 242 QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSG 279
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 50.2 bits (118), Expect = 2e-07
Identities = 17/115 (14%), Positives = 30/115 (26%), Gaps = 10/115 (8%)
Query: 153 FDFAIWKYSLVFRSWMKCEGMNHPRCLFGS--GSLGSIAIIAGGSDK----NGHVLKSAE 206
+ + + G+ R S GS I G + + + E
Sbjct: 265 HIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPE 324
Query: 207 LYDSTTGRWEMLPSMHSPRRLCSG--FFMDGKFYVIGGM--SSPTVSLTCGEEFD 257
+Y + R S DG+ + GG T + + F
Sbjct: 325 IYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFT 379
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 47.5 bits (111), Expect = 1e-06
Identities = 23/178 (12%), Positives = 43/178 (24%), Gaps = 23/178 (12%)
Query: 186 GSIAIIAGGSDKN----GHVLKSAELYDSTTGRWEMLPSMHSPR-RLCSG--FFMDGKFY 238
G + + + + + +D +TG + C G +G+
Sbjct: 31 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIV 90
Query: 239 VIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQ--LYAVEYL 296
V GG + +D + W M + A V ++
Sbjct: 91 VTGGNDAKKT-----SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVF 145
Query: 297 TNMVKKYDKLKNTWDVLGRLPVRADLS---------NGWGLAFKACGNELLVVGGQRG 345
+ Y TW L V L+ + F + G
Sbjct: 146 EKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTA 203
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 47.1 bits (110), Expect = 2e-06
Identities = 16/162 (9%), Positives = 34/162 (20%), Gaps = 11/162 (6%)
Query: 212 TGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTV-----SLTCGEEFDLETRKWRKI 266
GRW + + G+ + + +T +D T
Sbjct: 8 LGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR 67
Query: 267 EGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT-NMVKKYDKLKNTWDVLGRLPV---RADL 322
P + + Q+ YD ++W + V
Sbjct: 68 TVT--VTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSS 125
Query: 323 SNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNN 364
+ G ++ E + +W
Sbjct: 126 ATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV 167
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 390 | |||
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.95 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.93 | |
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 98.88 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.13 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 98.02 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 97.64 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.48 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 96.96 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.81 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.64 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 96.58 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 96.42 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 96.3 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 96.22 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 96.11 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 95.88 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 95.8 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 95.73 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 95.24 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 95.18 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 95.17 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 94.95 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 94.89 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 94.85 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 94.81 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 94.5 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 94.36 | |
| d1v0ea1 | 516 | Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34 | 94.3 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 94.16 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 93.46 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 93.17 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 93.14 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 93.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 92.9 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 92.8 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 92.54 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 92.42 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.98 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 91.29 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 90.91 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 90.54 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 90.51 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 90.24 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 89.99 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 89.83 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 89.17 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 88.65 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 88.57 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 87.82 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 87.72 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 86.27 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 86.25 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 85.18 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 84.96 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 84.49 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 82.9 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 82.86 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 81.94 | |
| d1qhua1 | 192 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 81.94 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 81.07 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-37 Score=277.05 Aligned_cols=265 Identities=22% Similarity=0.349 Sum_probs=227.1
Q ss_pred ccEEEEEeC-----CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc-------cCCeEEEEECCC
Q 016421 97 EHWVYLVCD-----PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL-------FDFAIWKYSLVF 164 (390)
Q Consensus 97 ~~~l~~~~~-----~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~-------~~~~~~~yd~~t 164 (390)
...||++|| ...++.||+.+++|.+++++|.++.. +++++.+++||++||.. ..+++++||+.+
T Consensus 4 g~~iyv~GG~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~----~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 79 (288)
T d1zgka1 4 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG----LAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMT 79 (288)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS----CEEEEETTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCEEEEECCcCCCCCceEEEEECCCCeEEECCCCCCccce----eEEEEECCEEEEEeCcccCCCCccccchhhhccccc
Confidence 357899986 56889999999999999999987643 35677899999999953 346899999999
Q ss_pred CcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEeccc
Q 016421 165 RSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMS 244 (390)
Q Consensus 165 ~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 244 (390)
++|+.++++|.+|..|+++++++++|++||.... ...+.++.||+.++.|...+.++.+|..++++..++++|++||..
T Consensus 80 ~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~ 158 (288)
T d1zgka1 80 NQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFD 158 (288)
T ss_dssp TEEEECCCCSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred ccccccccccceecceeccccceeeEEecceecc-cccceeeeeccccCccccccccccccccceeeeeeecceEecCcc
Confidence 9999999999999999999999999999998654 357889999999999999999999999999999999999999987
Q ss_pred CCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec-----CCCeEEEEeCCCCceEEccCCCcc
Q 016421 245 SPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY-----LTNMVKKYDKLKNTWDVLGRLPVR 319 (390)
Q Consensus 245 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg-----~~~~v~~yd~~~~~W~~v~~~~~~ 319 (390)
... ....++.||+.+++|......+. .+..+.+++.+++|+++|| .....+.||..+++|..++++|.+
T Consensus 159 ~~~-~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 232 (288)
T d1zgka1 159 GTN-RLNSAECYYPERNEWRMITAMNT-----IRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 232 (288)
T ss_dssp SSC-BCCCEEEEETTTTEEEECCCCSS-----CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC
T ss_pred ccc-ccceEEEeecccccccccccccc-----ccccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCc
Confidence 643 56789999999999999887776 3445678999999999987 346889999999999999988876
Q ss_pred ccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccCccCeEEee
Q 016421 320 ADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYN 384 (390)
Q Consensus 320 ~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~~~ 384 (390)
+. +++++.++++|||+||.+.. ....++++||+++ ++|+.+++||..|..+++
T Consensus 233 r~-----~~~~~~~~~~l~v~GG~~~~-~~~~~v~~yd~~~------~~W~~~~~~p~~R~~~~~ 285 (288)
T d1zgka1 233 RS-----ALGITVHQGRIYVLGGYDGH-TFLDSVECYDPDT------DTWSEVTRMTSGRSGVGV 285 (288)
T ss_dssp CB-----SCEEEEETTEEEEECCBCSS-CBCCEEEEEETTT------TEEEEEEECSSCCBSCEE
T ss_pred cc-----ceEEEEECCEEEEEecCCCC-eecceEEEEECCC------CEEEECCCCCCCcEeEEE
Confidence 54 35677899999999997643 4566899999999 899999999887766543
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-31 Score=236.24 Aligned_cols=229 Identities=20% Similarity=0.331 Sum_probs=192.6
Q ss_pred eCCEEEEEcccc--cCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCC---CCccceEEEEECCCCcE
Q 016421 141 VGSELLVFGREL--FDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKN---GHVLKSAELYDSTTGRW 215 (390)
Q Consensus 141 ~~~~iy~~Gg~~--~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~---~~~~~~~~~yd~~t~~W 215 (390)
.++.||++||.. ..+++++||+.+++|+.++++|.+|..|++++++++||++||.... ....+++++||+.+++|
T Consensus 3 ~g~~iyv~GG~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w 82 (288)
T d1zgka1 3 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 82 (288)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred cCCEEEEECCcCCCCCceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccc
Confidence 367899999975 3368899999999999999999999999999999999999997422 12467899999999999
Q ss_pred EEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec
Q 016421 216 EMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY 295 (390)
Q Consensus 216 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg 295 (390)
+.+++||.+|..|+++.++++||++||..... ....++.||+.++.|...+.++. .+..+.+++.++++|++||
T Consensus 83 ~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~r~~~~~~~~~~~~~~~GG 156 (288)
T d1zgka1 83 SPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVAPMLT-----RRIGVGVAVLNRLLYAVGG 156 (288)
T ss_dssp EECCCCSSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECCCCSS-----CCBSCEEEEETTEEEEECC
T ss_pred cccccccceecceeccccceeeEEecceeccc-ccceeeeeccccCcccccccccc-----ccccceeeeeeecceEecC
Confidence 99999999999999999999999999987643 57888999999999999888877 4566788999999999997
Q ss_pred C-----CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceE
Q 016421 296 L-----TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWK 370 (390)
Q Consensus 296 ~-----~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~ 370 (390)
. ...++.||+.+++|.....++..+. .++++..+++|+++||.... ....+.+.||+.+ ++|.
T Consensus 157 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~i~GG~~~~-~~~~~~~~~~~~~------~~~~ 224 (288)
T d1zgka1 157 FDGTNRLNSAECYYPERNEWRMITAMNTIRS-----GAGVCVLHNCIYAAGGYDGQ-DQLNSVERYDVET------ETWT 224 (288)
T ss_dssp BCSSCBCCCEEEEETTTTEEEECCCCSSCCB-----SCEEEEETTEEEEECCBCSS-SBCCCEEEEETTT------TEEE
T ss_pred cccccccceEEEeeccccccccccccccccc-----cccccceeeeEEEecCcccc-ccccceeeeeecc------eeee
Confidence 3 4689999999999999887776543 25677899999999997754 3455688999988 7999
Q ss_pred EecccCccCeEEeeeeee
Q 016421 371 VLAEKQHVGVFVYNCAVL 388 (390)
Q Consensus 371 ~~~~~p~~~~~~~~~~~~ 388 (390)
.++++|..+..+ +++++
T Consensus 225 ~~~~~p~~r~~~-~~~~~ 241 (288)
T d1zgka1 225 FVAPMKHRRSAL-GITVH 241 (288)
T ss_dssp ECCCCSSCCBSC-EEEEE
T ss_pred cccCccCcccce-EEEEE
Confidence 999887665544 44433
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.95 E-value=1.5e-27 Score=221.71 Aligned_cols=273 Identities=15% Similarity=0.097 Sum_probs=191.3
Q ss_pred cccEEEEEeCC------------CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECC
Q 016421 96 VEHWVYLVCDP------------RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLV 163 (390)
Q Consensus 96 ~~~~l~~~~~~------------~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~ 163 (390)
.+.++|++|+. .....|||.+++|..++.++.++.. .+...++..++.||++||.. .+.+.+||+.
T Consensus 29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~-~~~~~~~~~~g~i~v~Gg~~-~~~~~~yd~~ 106 (387)
T d1k3ia3 29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDM-FCPGISMDGNGQIVVTGGND-AKKTSLYDSS 106 (387)
T ss_dssp TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCC-SSCEEEECTTSCEEEECSSS-TTCEEEEEGG
T ss_pred eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCccc-ceeEEEEecCCcEEEeecCC-CcceeEecCc
Confidence 36789999751 1367899999999988777665433 23234455688999988865 4578999999
Q ss_pred CCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcC----c----------
Q 016421 164 FRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRL----C---------- 228 (390)
Q Consensus 164 t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~----~---------- 228 (390)
+++|..++.++.+|..|+++.+ ++++|++||........+++++||+.+++|+.++.++.+... .
T Consensus 107 ~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (387)
T d1k3ia3 107 SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAW 186 (387)
T ss_dssp GTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCC
T ss_pred cCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeE
Confidence 9999999999999999988776 689999999876666788999999999999998766543211 0
Q ss_pred eEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCc--CCCCCEEEE--ECCEEEEEecCC-------
Q 016421 229 SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRA--AQAPPLVAV--VDNQLYAVEYLT------- 297 (390)
Q Consensus 229 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~--~~~~~~~~~--~~g~l~v~gg~~------- 297 (390)
.....+|++|++||. ...++.||+.+..|.....++...... .+....+.. .++++|++||..
T Consensus 187 ~~~~~~G~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~ 260 (387)
T d1k3ia3 187 LFGWKKGSVFQAGPS------TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 260 (387)
T ss_dssp EEECGGGCEEECCSS------SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred EEEeCCCCEEEecCc------CCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcc
Confidence 111125566666553 346788999999999886655432211 122222222 378999999732
Q ss_pred -CeEEE-----EeCCCCceEEccCCCccccCCCcceeEEEEe-CCEEEEEcCCCCC-----CCCeEEEeeecCCCCCCCC
Q 016421 298 -NMVKK-----YDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-GNELLVVGGQRGP-----EGENVVLNSWCPKSGVNNG 365 (390)
Q Consensus 298 -~~v~~-----yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~-----~~~~~~i~~y~~~~~~~~~ 365 (390)
..... ++...+.|..+..||.++.. ++++++ +++|||+||.... ......+++|||++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~-----~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~----- 330 (387)
T d1k3ia3 261 TTNAHIITLGEPGTSPNTVFASNGLYFARTF-----HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ----- 330 (387)
T ss_dssp CCCEEEEECCSTTSCCEEEECTTCCSSCCBS-----CEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG-----
T ss_pred cceeecccccccccCCCceeecccccccccc-----ceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCC-----
Confidence 12222 23455678888989877653 334444 7899999997532 12334688999998
Q ss_pred CCceEEecccCccCeEEeeeee
Q 016421 366 TLDWKVLAEKQHVGVFVYNCAV 387 (390)
Q Consensus 366 ~~~W~~~~~~p~~~~~~~~~~~ 387 (390)
++|+.+++||..|..++++.+
T Consensus 331 -~~W~~~~~~~~~R~~Hs~a~l 351 (387)
T d1k3ia3 331 -DTFYKQNPNSIVRVYHSISLL 351 (387)
T ss_dssp -TEEEECCCCSSCCCTTEEEEE
T ss_pred -CeEEECCCCCCcccceEEEEE
Confidence 899999999877666554433
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.93 E-value=3.6e-25 Score=205.40 Aligned_cols=261 Identities=17% Similarity=0.191 Sum_probs=183.1
Q ss_pred cCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccC---------CeEEEEECCCCcEeecCCCCCCCcce--ee
Q 016421 114 PMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFD---------FAIWKYSLVFRSWMKCEGMNHPRCLF--GS 182 (390)
Q Consensus 114 ~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~---------~~~~~yd~~t~~W~~~~~~~~~r~~~--~~ 182 (390)
|...+|...+++|..+. ..+++..+++||++||.... ..+++|||.+++|...++++.+|..+ +.
T Consensus 6 p~~g~W~~~~~~p~~~~----~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~ 81 (387)
T d1k3ia3 6 PGLGRWGPTIDLPIVPA----AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGI 81 (387)
T ss_dssp TTSCEEEEEEECSSCCS----EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEE
T ss_pred CCCCccCCcCCCCcccc----EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEE
Confidence 66788998888876532 12344558999999995421 24789999999999887776666544 32
Q ss_pred e-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCceEEEEeCCC
Q 016421 183 G-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLET 260 (390)
Q Consensus 183 ~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~ 260 (390)
+ ..+++||++||... +++++||+.+++|+.+++|+.+|..|+++.+ ||+||++||........++++.||+.+
T Consensus 82 ~~~~~g~i~v~Gg~~~-----~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 82 SMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp EECTTSCEEEECSSST-----TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred EEecCCcEEEeecCCC-----cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence 2 34789999998653 4589999999999999999999999988876 789999999877666788999999999
Q ss_pred CceEEccCCCCCCCCc---------CCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccC--CCcceeE
Q 016421 261 RKWRKIEGMYPNVNRA---------AQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADL--SNGWGLA 329 (390)
Q Consensus 261 ~~W~~~~~~~~~~~~~---------~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~--~~~~~~~ 329 (390)
++|+.++.+....... ..........+|++|+.|+....++.||+.+..|.....++..+.. ....+.+
T Consensus 157 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (387)
T d1k3ia3 157 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA 236 (387)
T ss_dssp TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred CceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccE
Confidence 9999987665421110 0111122334688999999889999999999999987655433211 1112222
Q ss_pred EE--EeCCEEEEEcCCCCCCCC-----eEEEeeecCCCCCCCCCCceEEecccCccCeEEeeeee
Q 016421 330 FK--ACGNELLVVGGQRGPEGE-----NVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAV 387 (390)
Q Consensus 330 ~~--~~~~~lyv~GG~~~~~~~-----~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~ 387 (390)
+. ..+++||++||....... ...+..++... ..++|..++.||..+..+..+.+
T Consensus 237 ~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~r~~~~~~~~ 297 (387)
T d1k3ia3 237 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGT----SPNTVFASNGLYFARTFHTSVVL 297 (387)
T ss_dssp EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTS----CCEEEECTTCCSSCCBSCEEEEC
T ss_pred EEeeccCCceEEEEeccCCCCCcccceeeccccccccc----CCCceeeccccccccccceeeec
Confidence 22 248999999997643221 11122233222 23679999999887776655543
|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=7e-10 Score=65.44 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=37.0
Q ss_pred CCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCc
Q 016421 47 LPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYL 86 (390)
Q Consensus 47 ~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~ 86 (390)
|..||+|++.+||++||.+++.+++.|||+|+.+..++.+
T Consensus 1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l 40 (41)
T d1fs1a1 1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40 (41)
T ss_dssp CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence 4689999999999999999999999999999999988754
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=7.2e-07 Score=64.26 Aligned_cols=45 Identities=18% Similarity=0.246 Sum_probs=41.7
Q ss_pred CCCCCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCchh
Q 016421 44 DSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYG 88 (390)
Q Consensus 44 ~~~~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~~ 88 (390)
..++..||+||+..||++|+..++.++.+|||+|+.+..++.+..
T Consensus 16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~ 60 (102)
T d2ovrb1 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWR 60 (102)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHH
T ss_pred cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 467889999999999999999999999999999999999988764
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.02 E-value=4.6e-07 Score=65.00 Aligned_cols=43 Identities=19% Similarity=0.362 Sum_probs=37.8
Q ss_pred CCCCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhc-CCch
Q 016421 45 SLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKS-GYLY 87 (390)
Q Consensus 45 ~~~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s-~~~~ 87 (390)
..+..||+||++.||++|+..+|.++..|||+|+.++.+ +.+.
T Consensus 4 D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LW 47 (100)
T d1nexb1 4 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLW 47 (100)
T ss_dssp CHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHH
T ss_pred CchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 356789999999999999999999999999999999875 4443
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=1.2e-05 Score=59.29 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=38.5
Q ss_pred CCCCCh----HHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCchh
Q 016421 46 LLPGLV----DDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYG 88 (390)
Q Consensus 46 ~~~~LP----~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~~ 88 (390)
++..|| |||+..||++|+..+|.++.+|||+|+.++.++.+..
T Consensus 10 ~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk 56 (118)
T d1p22a1 10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWK 56 (118)
T ss_dssp HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHH
T ss_pred HHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 455666 6999999999999999999999999999999988764
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.48 E-value=0.012 Score=50.19 Aligned_cols=195 Identities=9% Similarity=-0.007 Sum_probs=93.3
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR 177 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r 177 (390)
..|...+....+..+|...........++.... ......+..++..++.+|......+.+++..+.+-.. .+....
T Consensus 71 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~--~l~~h~ 146 (311)
T d1nr0a1 71 YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG--PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG--NLTGQA 146 (311)
T ss_dssp SEEEEEETTSEEEEEESSSTTCCEEEEEECSSS--CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB--CCCCCS
T ss_pred CeEeccccCceEeeeeeeccccccccccccccC--ccccccccccccccccccccccccccccccccccccc--cccccc
Confidence 334333345677888887665422111111100 0000111225566666665444556777776654322 222111
Q ss_pred cceeeeee---CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCce
Q 016421 178 CLFGSGSL---GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTC 252 (390)
Q Consensus 178 ~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 252 (390)
.....+.+ +..+++.|+.++ .+.+||..+.+-...- .........+.. ++++++.|+.++ .
T Consensus 147 ~~v~~v~~~~~~~~~l~sgs~d~------~i~i~d~~~~~~~~~~--~~~~~~i~~v~~~p~~~~l~~~~~d~------~ 212 (311)
T d1nr0a1 147 RAMNSVDFKPSRPFRIISGSDDN------TVAIFEGPPFKFKSTF--GEHTKFVHSVRYNPDGSLFASTGGDG------T 212 (311)
T ss_dssp SCEEEEEECSSSSCEEEEEETTS------CEEEEETTTBEEEEEE--CCCSSCEEEEEECTTSSEEEEEETTS------C
T ss_pred cccccccccccceeeeccccccc------cccccccccccccccc--ccccccccccccCccccccccccccc------c
Confidence 11122222 334566666543 3788998876543321 111122223333 566666666532 4
Q ss_pred EEEEeCCCCceEEc-cCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCce
Q 016421 253 GEEFDLETRKWRKI-EGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTW 310 (390)
Q Consensus 253 v~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W 310 (390)
+..||..+.+-... .........+.....+++. .+++.++.|+.-+.|.+||..+++-
T Consensus 213 v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~ 272 (311)
T d1nr0a1 213 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 272 (311)
T ss_dssp EEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 67788887654322 2111111101111112222 2567777777778899999988763
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.96 E-value=0.023 Score=48.65 Aligned_cols=197 Identities=11% Similarity=0.009 Sum_probs=104.0
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeec-CCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKC-EGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.||+.. .....++++||.++..... .+.. ...++++. -++.+|++..... .....+..++..+.....+.
T Consensus 50 ~G~Ly~~D--~~~g~I~ri~p~g~~~~~~~~~~~--~~p~gla~~~dG~l~va~~~~~--~~~~~i~~~~~~~~~~~~~~ 123 (319)
T d2dg1a1 50 QGQLFLLD--VFEGNIFKINPETKEIKRPFVSHK--ANPAAIKIHKDGRLFVCYLGDF--KSTGGIFAATENGDNLQDII 123 (319)
T ss_dssp TSCEEEEE--TTTCEEEEECTTTCCEEEEEECSS--SSEEEEEECTTSCEEEEECTTS--SSCCEEEEECTTSCSCEEEE
T ss_pred CCCEEEEE--CCCCEEEEEECCCCeEEEEEeCCC--CCeeEEEECCCCCEEEEecCCC--ccceeEEEEcCCCceeeeec
Confidence 45677753 2345789999998765432 2211 12234433 3678998743211 12455788888887755432
Q ss_pred -CCCCCCcCceEE--EECCEEEEEecccCCCccCceEEEEeCCCCceEEccC-CCCCCCCcCCCCCEEEEE--CCEEEEE
Q 016421 220 -SMHSPRRLCSGF--FMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEG-MYPNVNRAAQAPPLVAVV--DNQLYAV 293 (390)
Q Consensus 220 -~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~--~g~l~v~ 293 (390)
..... ....-+ .-+|+||+..-..........++++++.....+.+.. +..+ ..++.- ++.||+.
T Consensus 124 ~~~~~~-~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~p--------nGia~s~dg~~lyva 194 (319)
T d2dg1a1 124 EDLSTA-YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVA--------NGIALSTDEKVLWVT 194 (319)
T ss_dssp CSSSSC-CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSE--------EEEEECTTSSEEEEE
T ss_pred cCCCcc-cCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeecccee--------eeeeeccccceEEEe
Confidence 22222 222222 2378888864222222234568889998877766532 2111 123332 3479999
Q ss_pred ecCCCeEEEEeCCCCc---eEEccCCCccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 294 EYLTNMVKKYDKLKNT---WDVLGRLPVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 294 gg~~~~v~~yd~~~~~---W~~v~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
....+.|++||...+. .......+.......+. -+++ --+|+|||.....+ .|.+||++-
T Consensus 195 d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~P-dGl~vD~~G~l~Va~~~~g------~V~~~~p~G 258 (319)
T d2dg1a1 195 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGP-DSCCIDSDDNLYVAMYGQG------RVLVFNKRG 258 (319)
T ss_dssp EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEE-EEEEEBTTCCEEEEEETTT------EEEEECTTS
T ss_pred cccCCceEEEEEcCCCceeccccceeeeccCCccce-eeeeEcCCCCEEEEEcCCC------EEEEECCCC
Confidence 8888899999876542 11111111000000000 1222 34788998853221 588999865
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.81 E-value=0.058 Score=45.65 Aligned_cols=192 Identities=10% Similarity=0.010 Sum_probs=94.7
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.+++.|+. +..+.+||..+........++........+.+ +++.++.+|... ...+.++|..+++-..
T Consensus 69 ~g~~latg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~----~~~~~v~~~~~~~~~~-- 140 (311)
T d1nr0a1 69 SGYYCASGDV--HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR----ERFGHVFLFDTGTSNG-- 140 (311)
T ss_dssp TSSEEEEEET--TSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS----SCSEEEEETTTCCBCB--
T ss_pred CCCeEecccc--CceEeeeeeeccccccccccccccCccccccccccccccccccccc----cccccccccccccccc--
Confidence 5666666653 45788999887764322112111111111222 456666665432 2335677777664322
Q ss_pred CCCCCCcCceEEEE--CCE-EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEe
Q 016421 220 SMHSPRRLCSGFFM--DGK-FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVE 294 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~g 294 (390)
.+.........+.. ++. +++.|+.++ .+..||..+.+-...-.... .....+.. ++++++.+
T Consensus 141 ~l~~h~~~v~~v~~~~~~~~~l~sgs~d~------~i~i~d~~~~~~~~~~~~~~-------~~i~~v~~~p~~~~l~~~ 207 (311)
T d1nr0a1 141 NLTGQARAMNSVDFKPSRPFRIISGSDDN------TVAIFEGPPFKFKSTFGEHT-------KFVHSVRYNPDGSLFAST 207 (311)
T ss_dssp CCCCCSSCEEEEEECSSSSCEEEEEETTS------CEEEEETTTBEEEEEECCCS-------SCEEEEEECTTSSEEEEE
T ss_pred cccccccccccccccccceeeeccccccc------cccccccccccccccccccc-------ccccccccCccccccccc
Confidence 22222222223333 344 455555432 46778988765433221111 01112222 56777777
Q ss_pred cCCCeEEEEeCCCCceEEccCCC-ccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 295 YLTNMVKKYDKLKNTWDVLGRLP-VRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 295 g~~~~v~~yd~~~~~W~~v~~~~-~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+..+.+..||..+++-...-... .....+...-.+++. -+++.++.|+.++ .|.+||.++
T Consensus 208 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg------~v~iwd~~t 269 (311)
T d1nr0a1 208 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK------TIKIWNVAT 269 (311)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS------EEEEEETTT
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCC------eEEEEECCC
Confidence 77788999998876543322111 111111111122222 2567777777653 588999877
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.64 E-value=0.052 Score=45.76 Aligned_cols=209 Identities=11% Similarity=0.020 Sum_probs=107.0
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
++.||.+- .....++++|+.+++-+... +|.... ..+..-++.+++... +.+..||+.+++.+.+.+.
T Consensus 29 ~~~l~wvD--i~~~~I~r~d~~~g~~~~~~-~~~~~~-~i~~~~dg~l~va~~--------~gl~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 29 SGTAWWFN--ILERELHELHLASGRKTVHA-LPFMGS-ALAKISDSKQLIASD--------DGLFLRDTATGVLTLHAEL 96 (295)
T ss_dssp TTEEEEEE--GGGTEEEEEETTTTEEEEEE-CSSCEE-EEEEEETTEEEEEET--------TEEEEEETTTCCEEEEECS
T ss_pred CCEEEEEE--CCCCEEEEEECCCCeEEEEE-CCCCcE-EEEEecCCCEEEEEe--------CccEEeecccceeeEEeee
Confidence 56666542 13357999999998765432 222211 122223677776531 3488999999999887554
Q ss_pred CCC----CcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEec
Q 016421 222 HSP----RRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEY 295 (390)
Q Consensus 222 ~~~----r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg 295 (390)
... |.....+--+|+||+-....... ...-..|....++.+.+..-... ...++.. ++.+|+.+.
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~--~~~g~l~~~~~g~~~~~~~~~~~-------~Ng~~~s~d~~~l~~~dt 167 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAE--TGAGSIYHVAKGKVTKLFADISI-------PNSICFSPDGTTGYFVDT 167 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCC--TTCEEEEEEETTEEEEEEEEESS-------EEEEEECTTSCEEEEEET
T ss_pred ecCCCcccceeeEECCCCCEEEEecccccc--ccceeEeeecCCcEEEEeeccCC-------cceeeecCCCceEEEeec
Confidence 332 22222223378887754332221 12223344445665554321110 0012222 456888888
Q ss_pred CCCeEEEEeCCCC--c----eEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCce
Q 016421 296 LTNMVKKYDKLKN--T----WDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDW 369 (390)
Q Consensus 296 ~~~~v~~yd~~~~--~----W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W 369 (390)
..+.|++|+...+ . ......++...... -|. ++.-+|.||+..-..+ .|.+|||+. ...
T Consensus 168 ~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~p--dG~-~vD~~GnlWva~~~~g------~V~~~dp~G------~~~ 232 (295)
T d2ghsa1 168 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM--DGS-VCDAEGHIWNARWGEG------AVDRYDTDG------NHI 232 (295)
T ss_dssp TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEE--EEE-EECTTSCEEEEEETTT------EEEEECTTC------CEE
T ss_pred ccceeeEeeecccccccccceEEEeccCcccccc--cce-EEcCCCCEEeeeeCCC------ceEEecCCC------cEe
Confidence 8899999976432 1 11211121111100 112 2234778888731111 488999976 455
Q ss_pred EEecccCccCeEEeeeeeec
Q 016421 370 KVLAEKQHVGVFVYNCAVLG 389 (390)
Q Consensus 370 ~~~~~~p~~~~~~~~~~~~~ 389 (390)
..+.-+ . ..+.+|+.-|
T Consensus 233 ~~i~lP-~--~~~T~~~FGG 249 (295)
T d2ghsa1 233 ARYEVP-G--KQTTCPAFIG 249 (295)
T ss_dssp EEEECS-C--SBEEEEEEES
T ss_pred eEecCC-C--CceEEEEEeC
Confidence 555433 2 2355555543
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.052 Score=46.24 Aligned_cols=183 Identities=16% Similarity=0.074 Sum_probs=91.6
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++..++.|+. ...+.+||....+......+........... -++.+++.++.+ ..+.++|..+++-....
T Consensus 108 dg~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------~~i~~~~~~~~~~~~~~ 179 (337)
T d1gxra_ 108 DGCTLIVGGE--ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp TSSEEEEEES--SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEE
T ss_pred CCCEEEEeec--ccccccccccccccccccccccccccccccccccccccccccccc------ccccccccccccccccc
Confidence 5555555553 4578889987665544333222211111112 245555555543 34788898877643321
Q ss_pred CCCCCCcCceEEE--ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecC
Q 016421 220 SMHSPRRLCSGFF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYL 296 (390)
Q Consensus 220 ~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~ 296 (390)
.... .....+. .++...+.|+.+ ..+..||..+.+-...-..... ...++. .++..++.|+.
T Consensus 180 ~~~~--~~v~~l~~s~~~~~~~~~~~d------~~v~i~d~~~~~~~~~~~~~~~-------i~~l~~~~~~~~l~~~~~ 244 (337)
T d1gxra_ 180 QGHT--DGASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHDFTSQ-------IFSLGYCPTGEWLAVGME 244 (337)
T ss_dssp CCCS--SCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECSSC-------EEEEEECTTSSEEEEEET
T ss_pred cccc--ccccccccccccccccccccc------ccccccccccceeecccccccc-------eEEEEEcccccccceecc
Confidence 1111 1112222 255566666543 3467788877653221111110 011222 25666777777
Q ss_pred CCeEEEEeCCCCceEEccCCCccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 297 TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 297 ~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.+.+||..+..-.....-.. .-..+. ..+++.++.|+.++ .|.+||..+
T Consensus 245 d~~i~i~d~~~~~~~~~~~~~~-------~i~~v~~s~~g~~l~s~s~Dg------~i~iwd~~~ 296 (337)
T d1gxra_ 245 SSNVEVLHVNKPDKYQLHLHES-------CVLSLKFAYCGKWFVSTGKDN------LLNAWRTPY 296 (337)
T ss_dssp TSCEEEEETTSSCEEEECCCSS-------CEEEEEECTTSSEEEEEETTS------EEEEEETTT
T ss_pred cccccccccccccccccccccc-------ccceEEECCCCCEEEEEeCCC------eEEEEECCC
Confidence 7889999988776433221111 111222 23566677776553 477888766
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.42 E-value=0.062 Score=46.56 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=83.0
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcce-eeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLF-GSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.+++.|+. ...+.+||..++++..+..+....... +++. -+++.++.||.++ .+.++|+.++.|....
T Consensus 18 dg~~la~~~~--~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~------~i~vWd~~~~~~~~~~ 89 (371)
T d1k8kc_ 18 DRTQIAICPN--NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR------NAYVWTLKGRTWKPTL 89 (371)
T ss_dssp TSSEEEEECS--SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTS------CEEEEEEETTEEEEEE
T ss_pred CCCEEEEEeC--CCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCC------eEEEEeeccccccccc
Confidence 4555555543 357889999888887665543222222 2222 2455556666543 4788999899988654
Q ss_pred CCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCC-EEEE-ECCEEEEEec
Q 016421 220 SMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPP-LVAV-VDNQLYAVEY 295 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~-~~g~l~v~gg 295 (390)
...........+.. +++.+++|+.++ .-.++.++.....+.......... ... +++. -++++++.|+
T Consensus 90 ~~~~~~~~v~~i~~~p~~~~l~~~s~d~----~i~i~~~~~~~~~~~~~~~~~~~~-----~~v~~v~~~p~~~~l~s~s 160 (371)
T d1k8kc_ 90 VILRINRAARCVRWAPNEKKFAVGSGSR----VISICYFEQENDWWVCKHIKKPIR-----STVLSLDWHPNSVLLAAGS 160 (371)
T ss_dssp ECCCCSSCEEEEEECTTSSEEEEEETTS----SEEEEEEETTTTEEEEEEECTTCC-----SCEEEEEECTTSSEEEEEE
T ss_pred ccccccccccccccccccccceeecccC----cceeeeeecccccccccccccccc-----cccccccccccccceeccc
Confidence 44333333333333 566666665432 224555666666555433222110 111 1221 2567777787
Q ss_pred CCCeEEEEeCCCCc
Q 016421 296 LTNMVKKYDKLKNT 309 (390)
Q Consensus 296 ~~~~v~~yd~~~~~ 309 (390)
.-+.+..||.....
T Consensus 161 ~D~~v~v~~~~~~~ 174 (371)
T d1k8kc_ 161 CDFKCRIFSAYIKE 174 (371)
T ss_dssp TTSCEEEEECCCTT
T ss_pred cCcEEEEEeeccCc
Confidence 77889999876654
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.30 E-value=0.19 Score=43.17 Aligned_cols=197 Identities=11% Similarity=0.052 Sum_probs=95.7
Q ss_pred EEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCc
Q 016421 99 WVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRC 178 (390)
Q Consensus 99 ~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~ 178 (390)
.|.+.+....+..||...+++..+..+..+... .....+..++..++.|+. +..+.+||..+++|.....+.....
T Consensus 21 ~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~--V~~l~fsp~~~~l~s~s~--D~~i~vWd~~~~~~~~~~~~~~~~~ 96 (371)
T d1k8kc_ 21 QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ--VTGVDWAPDSNRIVTCGT--DRNAYVWTLKGRTWKPTLVILRINR 96 (371)
T ss_dssp EEEEECSSSEEEEEEEETTEEEEEEEEECCSSC--EEEEEEETTTTEEEEEET--TSCEEEEEEETTEEEEEEECCCCSS
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEEEecCCCCC--EEEEEECCCCCEEEEEEC--CCeEEEEeecccccccccccccccc
Confidence 343333456688899888877665443321110 001112234555555543 4578899999998876644433332
Q ss_pred ceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEE
Q 016421 179 LFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGE 254 (390)
Q Consensus 179 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 254 (390)
....+.+ +++.++.|+.++ .-.++.++.....+.........+.....+.. ++++++.|+.++ .+.
T Consensus 97 ~v~~i~~~p~~~~l~~~s~d~----~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~------~v~ 166 (371)
T d1k8kc_ 97 AARCVRWAPNEKKFAVGSGSR----VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF------KCR 166 (371)
T ss_dssp CEEEEEECTTSSEEEEEETTS----SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS------CEE
T ss_pred cccccccccccccceeecccC----cceeeeeecccccccccccccccccccccccccccccceeccccCc------EEE
Confidence 2222222 455566665432 23455566555555443222222222222322 566667666543 355
Q ss_pred EEeCCCCceEEccCCCC-------C-----CCCcCCCCCEEE-EECCEEEEEecCCCeEEEEeCCCCc
Q 016421 255 EFDLETRKWRKIEGMYP-------N-----VNRAAQAPPLVA-VVDNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 255 ~yd~~~~~W~~~~~~~~-------~-----~~~~~~~~~~~~-~~~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
.||.............. . ...+......++ ..+|..++.++.-+.+..||..+..
T Consensus 167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~ 234 (371)
T d1k8kc_ 167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 234 (371)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeeccc
Confidence 67766544322111000 0 000000001111 1245666667777889999987654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.22 E-value=0.3 Score=41.70 Aligned_cols=197 Identities=16% Similarity=0.132 Sum_probs=88.7
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
++.+++.|+. ...+.++|..+.+...................++...+.|+.. ..+.++|..+..-......
T Consensus 132 ~~~~l~s~~~--dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~------~~i~~~d~~~~~~~~~~~~ 203 (388)
T d1erja_ 132 DGKFLATGAE--DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD------RTVRIWDLRTGQCSLTLSI 203 (388)
T ss_dssp TSSEEEEEET--TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEEC
T ss_pred CCCcceeccc--ccccccccccccccccccccccccccccccccccccccccccc------eeeeeeecccccccccccc
Confidence 4555555553 3568888988876644322111111111111234444555432 3477888877654433221
Q ss_pred CCCCcCceEEE--ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCC-CCCcCCCCCEEEE-ECCEEEEEecCC
Q 016421 222 HSPRRLCSGFF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPN-VNRAAQAPPLVAV-VDNQLYAVEYLT 297 (390)
Q Consensus 222 ~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-~~~~~~~~~~~~~-~~g~l~v~gg~~ 297 (390)
... ....+. .++.+++.|+.++ .+..||..+............ ...+......++. -++++++.|+..
T Consensus 204 ~~~--~~~~~~~~~~~~~l~~~~~d~------~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 275 (388)
T d1erja_ 204 EDG--VTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 275 (388)
T ss_dssp SSC--EEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccc--cccccccCCCCCeEEEEcCCC------eEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence 111 111222 2566666666543 367788888765433221111 0000001011222 256677777777
Q ss_pred CeEEEEeCCCCceEEccCCCcc------ccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 298 NMVKKYDKLKNTWDVLGRLPVR------ADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 298 ~~v~~yd~~~~~W~~v~~~~~~------~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.+..||..+..-......+.. ...+...-.+++. -++++++.|+.++ .|.+||..+
T Consensus 276 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg------~i~vwd~~~ 339 (388)
T d1erja_ 276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR------GVLFWDKKS 339 (388)
T ss_dssp SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS------EEEEEETTT
T ss_pred CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCC------EEEEEECCC
Confidence 8899999876543221111100 0000001111211 2566777777553 588999876
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.14 Score=43.40 Aligned_cols=222 Identities=10% Similarity=0.014 Sum_probs=102.6
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR 177 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r 177 (390)
..|+..+....+..+|....+......+...... .....+..++.+++.++ ....+..+|..+++-..........
T Consensus 110 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~--~d~~i~~~~~~~~~~~~~~~~~~~~ 185 (337)
T d1gxra_ 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA--CYALAISPDSKVCFSCC--SDGNIAVWDLHNQTLVRQFQGHTDG 185 (337)
T ss_dssp SEEEEEESSSEEEEEECCCC--EEEEEEECSSSC--EEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CEEEEeeccccccccccccccccccccccccccc--ccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 3343333456677888765544332222211100 00011122444555443 2346788888877643322211111
Q ss_pred cceeee-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCceEEE
Q 016421 178 CLFGSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTCGEE 255 (390)
Q Consensus 178 ~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 255 (390)
..+++ ..++..++.|+.+ ..+.+||..+++-...-....+ -.+.+.. +++..+.|+.+ ..+..
T Consensus 186 -v~~l~~s~~~~~~~~~~~d------~~v~i~d~~~~~~~~~~~~~~~--i~~l~~~~~~~~l~~~~~d------~~i~i 250 (337)
T d1gxra_ 186 -ASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHDFTSQ--IFSLGYCPTGEWLAVGMES------SNVEV 250 (337)
T ss_dssp -EEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECSSC--EEEEEECTTSSEEEEEETT------SCEEE
T ss_pred -ccccccccccccccccccc------ccccccccccceeecccccccc--eEEEEEcccccccceeccc------ccccc
Confidence 11222 1245556666543 3478889887653221111111 1122222 45555665543 24677
Q ss_pred EeCCCCceEEccCCCCCCCCcCCCCCEEE-EECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-e
Q 016421 256 FDLETRKWRKIEGMYPNVNRAAQAPPLVA-VVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-C 333 (390)
Q Consensus 256 yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~ 333 (390)
||..+..-......... ...++ ..+|++++.|+.-+.|.+||..+++ .+..+.... .-.++.. -
T Consensus 251 ~d~~~~~~~~~~~~~~~-------i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~~-----~v~~~~~s~ 316 (337)
T d1gxra_ 251 LHVNKPDKYQLHLHESC-------VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--SIFQSKESS-----SVLSCDISV 316 (337)
T ss_dssp EETTSSCEEEECCCSSC-------EEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEECSS-----CEEEEEECT
T ss_pred ccccccccccccccccc-------cceEEECCCCCEEEEEeCCCeEEEEECCCCC--EEEEccCCC-----CEEEEEEeC
Confidence 88877654332211110 01122 2356777777777889999987654 222211111 1122222 2
Q ss_pred CCEEEEEcCCCCCCCCeEEEeeecC
Q 016421 334 GNELLVVGGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 334 ~~~lyv~GG~~~~~~~~~~i~~y~~ 358 (390)
+++.++.|+.++ .|.+||.
T Consensus 317 d~~~l~t~s~D~------~I~vWdl 335 (337)
T d1gxra_ 317 DDKYIVTGSGDK------KATVYEV 335 (337)
T ss_dssp TSCEEEEEETTS------CEEEEEE
T ss_pred CCCEEEEEeCCC------eEEEEEE
Confidence 567777777653 3667764
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.88 E-value=0.36 Score=39.73 Aligned_cols=191 Identities=10% Similarity=0.081 Sum_probs=96.8
Q ss_pred ccEEEEEe-CCCeeEEEecCCCcee-eCCCCCCCcccCCCCeeEEEe-C-CEEEEEcccccCCeEEEEECCCCcEeecCC
Q 016421 97 EHWVYLVC-DPRGWEAFDPMKKKWM-ALPKIPCDECFNHADKESLAV-G-SELLVFGRELFDFAIWKYSLVFRSWMKCEG 172 (390)
Q Consensus 97 ~~~l~~~~-~~~~~~~~d~~~~~W~-~l~~~p~~~~~~~~~~~~~~~-~-~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~ 172 (390)
+..||+.. +...+..||+.-. +. .++.................. + +..++. .......+..+++....+.....
T Consensus 33 dg~i~VaD~~n~rI~v~d~~G~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~g~~~~~~~~ 110 (279)
T d1q7fa_ 33 QNDIIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVT-ERSPTHQIQIYNQYGQFVRKFGA 110 (279)
T ss_dssp TCCEEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEE-ECGGGCEEEEECTTSCEEEEECT
T ss_pred CCCEEEEECCCCEEEEEeCCCC-EEEEecccCCCccccccccccccccccccccee-ccCCccccccccccccceeecCC
Confidence 45677774 4567888998643 32 222211111111111112222 2 233322 22233567788877666655533
Q ss_pred CCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCcc
Q 016421 173 MNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVS 249 (390)
Q Consensus 173 ~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 249 (390)
.. .....+.++ -++.+|+.... ...+.+||+....-..+...... .....+.. ++.||+....
T Consensus 111 ~~-~~~p~~~avd~~G~i~v~~~~------~~~~~~~~~~g~~~~~~g~~~~~-~~~~~i~~d~~g~i~v~d~~------ 176 (279)
T d1q7fa_ 111 TI-LQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKHL-EFPNGVVVNDKQEIFISDNR------ 176 (279)
T ss_dssp TT-CSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTTC-SSEEEEEECSSSEEEEEEGG------
T ss_pred Cc-ccccceeccccCCcEEEEeec------cceeeEeccCCceeecccccccc-cccceeeeccceeEEeeecc------
Confidence 21 122223333 35678887542 34578888876554443221211 12223333 6789998553
Q ss_pred CceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCC-CeEEEEeCCCC
Q 016421 250 LTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLT-NMVKKYDKLKN 308 (390)
Q Consensus 250 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~-~~v~~yd~~~~ 308 (390)
...+.+||+..+....+...... .....+++ .+|.||+.+... ..|.+||++.+
T Consensus 177 ~~~V~~~d~~G~~~~~~g~~g~~-----~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~ 232 (279)
T d1q7fa_ 177 AHCVKVFNYEGQYLRQIGGEGIT-----NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ 232 (279)
T ss_dssp GTEEEEEETTCCEEEEESCTTTS-----CSEEEEEECTTCCEEEEECSSSCEEEEECTTSC
T ss_pred ccceeeeecCCceeeeecccccc-----cCCcccccccCCeEEEEECCCCcEEEEECCCCC
Confidence 34688899987766665432110 01112333 467899997543 46999997543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=95.80 E-value=0.37 Score=39.24 Aligned_cols=224 Identities=11% Similarity=0.085 Sum_probs=110.0
Q ss_pred cEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccCCeEEEEECCCCcEeecCCCCC
Q 016421 98 HWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH 175 (390)
Q Consensus 98 ~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~ 175 (390)
.++|+.. +...+..+|+.+.+....-++...+ . ...+.. +.+||+.+.. ...+.+||..+++-... ++.
T Consensus 2 ~~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~---~va~spdG~~l~v~~~~--~~~i~v~d~~t~~~~~~--~~~ 72 (301)
T d1l0qa2 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNP--M---GAVISPDGTKVYVANAH--SNDVSIIDTATNNVIAT--VPA 72 (301)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSSE--E---EEEECTTSSEEEEEEGG--GTEEEEEETTTTEEEEE--EEC
T ss_pred eEEEEEECCCCEEEEEECCCCeEEEEEECCCCc--e---EEEEeCCCCEEEEEECC--CCEEEEEECCCCceeee--eec
Confidence 3567765 4567888999988764322222111 0 112222 3567776542 35789999988764322 111
Q ss_pred CCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CCE-EEEEecccCCCccCc
Q 016421 176 PRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGK-FYVIGGMSSPTVSLT 251 (390)
Q Consensus 176 ~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~ 251 (390)
....+.++.. +..+++.+.. ...+.++|..+++....-... ......+.. ++. +++.+.. ..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dg~~~~~~~~~------~~ 138 (301)
T d1l0qa2 73 GSSPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKTG--KSPLGLALSPDGKKLYVTNNG------DK 138 (301)
T ss_dssp SSSEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEETT------TT
T ss_pred cccccccccccccccccccccc------cceeeecccccceeeeecccc--ccceEEEeecCCCeeeeeecc------cc
Confidence 2222233322 3455554432 234678888887654322111 111222222 444 4444322 23
Q ss_pred eEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeE
Q 016421 252 CGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLA 329 (390)
Q Consensus 252 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~ 329 (390)
.+..+|..+............ . ..++.. ++.+|+.+.....+..++................. +.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 206 (301)
T d1l0qa2 139 TVSVINTVTKAVINTVSVGRS----P---KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPS-----GIA 206 (301)
T ss_dssp EEEEEETTTTEEEEEEECCSS----E---EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEE-----EEE
T ss_pred ceeeeeccccceeeecccCCC----c---eEEEeeccccceeeecccccccccccccceeeeecccccCCcc-----eee
Confidence 456678877765433222111 0 012222 34567766666777788877776655433322211 122
Q ss_pred EEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 330 FKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 330 ~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+...++.+|+.+... ....|.+||+.+
T Consensus 207 ~~~~g~~~~v~~~~~----~~~~v~v~D~~t 233 (301)
T d1l0qa2 207 VNPEGTKAYVTNVDK----YFNTVSMIDTGT 233 (301)
T ss_dssp ECTTSSEEEEEEECS----SCCEEEEEETTT
T ss_pred ccccccccccccccc----eeeeeeeeecCC
Confidence 222355666654322 122577888876
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.73 E-value=0.33 Score=40.27 Aligned_cols=67 Identities=13% Similarity=0.020 Sum_probs=36.9
Q ss_pred EEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeC-CEEEEEcccccCCeEEEEECCCCcEee
Q 016421 99 WVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVG-SELLVFGRELFDFAIWKYSLVFRSWMK 169 (390)
Q Consensus 99 ~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~-~~iy~~Gg~~~~~~~~~yd~~t~~W~~ 169 (390)
.++..+....+..+|..+.+-...-+++... .......+..+ ..+|+.|.. ...+.+||..+++...
T Consensus 3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~--~~~~~i~~spDg~~l~v~~~~--~~~v~v~D~~t~~~~~ 70 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKMAVDKVITIADAG--PTPMVPMVAPGGRIAYATVNK--SESLVKIDLVTGETLG 70 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCT--TCCCCEEECTTSSEEEEEETT--TTEEEEEETTTCCEEE
T ss_pred EEEEEcCCCEEEEEECCCCeEEEEEECCCCC--CCccEEEECCCCCEEEEEECC--CCeEEEEECCCCcEEE
Confidence 4445455678888999887543211122111 11011123334 567777642 3579999999987643
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.24 E-value=0.38 Score=40.35 Aligned_cols=156 Identities=10% Similarity=-0.054 Sum_probs=84.6
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCC
Q 016421 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHP 176 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~ 176 (390)
+..++.+.....++.+|.......+++. .. ......+..+++.+++.+......+++||..++.-..+..-...
T Consensus 14 dG~~~a~~~~g~v~v~d~~~~~~~~~~~---~~---~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~ 87 (360)
T d1k32a3 14 DGDLIAFVSRGQAFIQDVSGTYVLKVPE---PL---RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGN 87 (360)
T ss_dssp GGGCEEEEETTEEEEECTTSSBEEECSC---CS---CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCS
T ss_pred CCCEEEEEECCeEEEEECCCCcEEEccC---CC---CEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCce
Confidence 3444455555677889998887776532 11 11112233467666666544445689999999887766442222
Q ss_pred Ccceeee-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCC----CccCc
Q 016421 177 RCLFGSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSP----TVSLT 251 (390)
Q Consensus 177 r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~ 251 (390)
. ..++ .-+++.++.++.. ..+..++..++....+..............-+|+..++++.... .....
T Consensus 88 v--~~~~~spdg~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~ 159 (360)
T d1k32a3 88 V--FAMGVDRNGKFAVVANDR------FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159 (360)
T ss_dssp E--EEEEECTTSSEEEEEETT------SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred E--Eeeeecccccccceeccc------cccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccc
Confidence 1 2222 2255555555533 35788999888765543333222222222336665555443321 12234
Q ss_pred eEEEEeCCCCceEEc
Q 016421 252 CGEEFDLETRKWRKI 266 (390)
Q Consensus 252 ~v~~yd~~~~~W~~~ 266 (390)
.+..+|..+++=..+
T Consensus 160 ~~~v~d~~~~~~~~~ 174 (360)
T d1k32a3 160 AIHVYDMEGRKIFAA 174 (360)
T ss_dssp EEEEEETTTTEEEEC
T ss_pred ceeeeccccCceeee
Confidence 577889888754443
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=95.18 E-value=0.39 Score=39.08 Aligned_cols=223 Identities=14% Similarity=0.076 Sum_probs=104.4
Q ss_pred ccEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccCCeEEEEECCCCcEeecCCCC
Q 016421 97 EHWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN 174 (390)
Q Consensus 97 ~~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~ 174 (390)
...+|+.+ ....+..+|..+.+-... ++...... ...+.. +..+++.+. ....+.+++..+++....-...
T Consensus 43 G~~l~v~~~~~~~i~v~d~~t~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 115 (301)
T d1l0qa2 43 GTKVYVANAHSNDVSIIDTATNNVIAT--VPAGSSPQ---GVAVSPDGKQVYVTNM--ASSTLSVIDTTSNTVAGTVKTG 115 (301)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEEEEE--EECSSSEE---EEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECS
T ss_pred CCEEEEEECCCCEEEEEECCCCceeee--eecccccc---cccccccccccccccc--ccceeeecccccceeeeecccc
Confidence 45677654 356788899887654321 11111100 111122 334555443 2356778888877653322211
Q ss_pred CCCcceeeee-e-CCEEEEEeccCCCCCccceEEEEECCCCcEEEc-CCCCCCCcCceEEEE--CCEEEEEecccCCCcc
Q 016421 175 HPRCLFGSGS-L-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML-PSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVS 249 (390)
Q Consensus 175 ~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 249 (390)
........ - +..+++.+.. ...+.+++..+...... .....+ ...+.. ++.+|+.+..
T Consensus 116 --~~~~~~~~~~dg~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~------ 178 (301)
T d1l0qa2 116 --KSPLGLALSPDGKKLYVTNNG------DKTVSVINTVTKAVINTVSVGRSP---KGIAVTPDGTKVYVANFD------ 178 (301)
T ss_dssp --SSEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECCSSE---EEEEECTTSSEEEEEETT------
T ss_pred --ccceEEEeecCCCeeeeeecc------ccceeeeeccccceeeecccCCCc---eEEEeeccccceeeeccc------
Confidence 11112222 2 3455554432 23467788887765442 221111 122222 3355555332
Q ss_pred CceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEe--cCCCeEEEEeCCCCceEEccCCCccccCCCcc
Q 016421 250 LTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVE--YLTNMVKKYDKLKNTWDVLGRLPVRADLSNGW 326 (390)
Q Consensus 250 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~g--g~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~ 326 (390)
...+..++................ .. .+.. -+..+|+.+ ...+.+.+||..+.+-.. .++..... .
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~--~~~~~~~~---~ 247 (301)
T d1l0qa2 179 SMSISVIDTVTNSVIDTVKVEAAP-----SG-IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA--RIPVGPDP---A 247 (301)
T ss_dssp TTEEEEEETTTTEEEEEEECSSEE-----EE-EEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE--EEECCSSE---E
T ss_pred ccccccccccceeeeecccccCCc-----ce-eeccccccccccccccceeeeeeeeecCCCeEEE--EEcCCCCE---E
Confidence 223455666666554433222210 00 1111 234566554 345689999988775322 22222111 1
Q ss_pred eeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 327 GLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 327 ~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.++..-+.+||+.++.++ .|.+||+++
T Consensus 248 ~va~spdg~~l~va~~~~~------~i~v~D~~t 275 (301)
T d1l0qa2 248 GIAVTPDGKKVYVALSFCN------TVSVIDTAT 275 (301)
T ss_dssp EEEECTTSSEEEEEETTTT------EEEEEETTT
T ss_pred EEEEeCCCCEEEEEECCCC------eEEEEECCC
Confidence 1222112446888877543 688999987
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.17 E-value=0.66 Score=38.09 Aligned_cols=182 Identities=16% Similarity=0.135 Sum_probs=94.5
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEEC
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMD 234 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 234 (390)
..+.++|+...+-... +............++..++.|+.++ .+.+||..+++-..... .......++..+
T Consensus 157 ~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~dg------~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~ 226 (342)
T d2ovrb2 157 FMVKVWDPETETCLHT--LQGHTNRVYSLQFDGIHVVSGSLDT------SIRVWDVETGNCIHTLT--GHQSLTSGMELK 226 (342)
T ss_dssp SCEEEEEGGGTEEEEE--ECCCSSCEEEEEECSSEEEEEETTS------CEEEEETTTCCEEEEEC--CCCSCEEEEEEE
T ss_pred CeEEEeecccceeeEE--EcCcccccccccCCCCEEEEEeCCC------eEEEeecccceeeeEec--ccccceeEEecC
Confidence 4667777765543221 1111122233344666667776543 37889988776433211 111122333445
Q ss_pred CEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEE-c
Q 016421 235 GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDV-L 313 (390)
Q Consensus 235 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~-v 313 (390)
+.+++.|+.+ ..+..||..+.+-...-..... ..........++.+++.|+.-+.|.+||.++++-.. +
T Consensus 227 ~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~ 296 (342)
T d2ovrb2 227 DNILVSGNAD------STVKIWDIKTGQCLQTLQGPNK----HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 296 (342)
T ss_dssp TTEEEEEETT------SCEEEEETTTCCEEEEECSTTS----CSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCC------CEEEEEecccccccccccccce----eeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEE
Confidence 5555666543 2477899887654332211111 111123345677778888888899999999887532 2
Q ss_pred cCCCccccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 314 GRLPVRADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
......... ..-.++... ++.+++.|+.++... ..+++||++.
T Consensus 297 ~~~~~~~~~--~~v~~v~~s~~~~~la~g~~dGt~~--~~l~~~Df~~ 340 (342)
T d2ovrb2 297 VTLESGGSG--GVVWRIRASNTKLVCAVGSRNGTEE--TKLLVLDFDV 340 (342)
T ss_dssp EECTTGGGT--CEEEEEEECSSEEEEEEECSSSSSC--CEEEEEECCC
T ss_pred ecccCCCCC--CCEEEEEECCCCCEEEEEeCCCCCe--eEEEEEeCCC
Confidence 221111110 111122222 456777777665332 2478888875
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=94.95 E-value=0.38 Score=40.55 Aligned_cols=197 Identities=10% Similarity=-0.037 Sum_probs=102.1
Q ss_pred cEEEEEe-CCCeeEEEecCCCceeeC-CCCCCCcccCCCCeeEEE--eCCEEEEEc--ccccCCeEEEEECCCCcEeecC
Q 016421 98 HWVYLVC-DPRGWEAFDPMKKKWMAL-PKIPCDECFNHADKESLA--VGSELLVFG--RELFDFAIWKYSLVFRSWMKCE 171 (390)
Q Consensus 98 ~~l~~~~-~~~~~~~~d~~~~~W~~l-~~~p~~~~~~~~~~~~~~--~~~~iy~~G--g~~~~~~~~~yd~~t~~W~~~~ 171 (390)
..||+.. ....++.+||........ ...... ...++ .++.+|+.. +......+..+++.+.......
T Consensus 51 G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~-------p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~ 123 (319)
T d2dg1a1 51 GQLFLLDVFEGNIFKINPETKEIKRPFVSHKAN-------PAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII 123 (319)
T ss_dssp SCEEEEETTTCEEEEECTTTCCEEEEEECSSSS-------EEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE
T ss_pred CCEEEEECCCCEEEEEECCCCeEEEEEeCCCCC-------eeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeec
Confidence 4466654 356788899987654322 111111 11233 367888764 2233456788888877654443
Q ss_pred C-CCC-CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC-CCCCCCcCceEEEE--C-CEEEEEecccC
Q 016421 172 G-MNH-PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP-SMHSPRRLCSGFFM--D-GKFYVIGGMSS 245 (390)
Q Consensus 172 ~-~~~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-~~~~~r~~~~~~~~--~-~~iyv~GG~~~ 245 (390)
. ... .+..-..+.-++.+|+..-..........++.+++.....+.+. .+.. ..+..+ + +.||+.-.
T Consensus 124 ~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~----pnGia~s~dg~~lyvad~--- 196 (319)
T d2dg1a1 124 EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISV----ANGIALSTDEKVLWVTET--- 196 (319)
T ss_dssp CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESS----EEEEEECTTSSEEEEEEG---
T ss_pred cCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccce----eeeeeeccccceEEEecc---
Confidence 2 221 12221223336788876422211223456888888877766542 2222 223333 3 46888732
Q ss_pred CCccCceEEEEeCCCCc---eEEccCCCCCCCCcCCCCC-EEEE-ECCEEEEEecCCCeEEEEeCCCCceEEc
Q 016421 246 PTVSLTCGEEFDLETRK---WRKIEGMYPNVNRAAQAPP-LVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVL 313 (390)
Q Consensus 246 ~~~~~~~v~~yd~~~~~---W~~~~~~~~~~~~~~~~~~-~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v 313 (390)
..+.+++||...+. .......+.... ....+ .+++ .+|.||+.....+.|.+||++.+.-.+|
T Consensus 197 ---~~~~I~~~d~~~~g~~~~~~~~~~~~~~~--~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i 264 (319)
T d2dg1a1 197 ---TANRLHRIALEDDGVTIQPFGATIPYYFT--GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQI 264 (319)
T ss_dssp ---GGTEEEEEEECTTSSSEEEEEEEEEEECC--SSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEE
T ss_pred ---cCCceEEEEEcCCCceeccccceeeeccC--CccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEE
Confidence 24568888865431 111111000000 00001 2333 4688999987778999999976655555
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=94.89 E-value=0.31 Score=40.64 Aligned_cols=66 Identities=11% Similarity=0.008 Sum_probs=37.7
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeC-CEEEEEcccccCCeEEEEECCCCcE
Q 016421 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVG-SELLVFGRELFDFAIWKYSLVFRSW 167 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~-~~iy~~Gg~~~~~~~~~yd~~t~~W 167 (390)
...+++......+..+|+.+.+-...-.+|...... ...+..+ ..+|+.+.. .+.+.+||..+.+-
T Consensus 8 ~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~---~l~~spDG~~l~v~~~~--~~~v~~~d~~t~~~ 74 (346)
T d1jmxb_ 8 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG---TAMMAPDNRTAYVLNNH--YGDIYGIDLDTCKN 74 (346)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSC---EEEECTTSSEEEEEETT--TTEEEEEETTTTEE
T ss_pred CcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcc---eEEECCCCCEEEEEECC--CCcEEEEeCccCee
Confidence 344444455778999999988654322233221111 1122234 467776643 36789999988754
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.85 E-value=0.89 Score=37.91 Aligned_cols=110 Identities=16% Similarity=0.178 Sum_probs=57.5
Q ss_pred CEEEEEeccCCCCCccceEEEEECCCCcEEE-cCCCCCCCcCceEEEE---CCEEEEEecccCCCccCceEEEEeCCCCc
Q 016421 187 SIAIIAGGSDKNGHVLKSAELYDSTTGRWEM-LPSMHSPRRLCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 187 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
..+++.+|.++ .+.+||..+..-.. .............+.. .+.+++.|+.++ .+..||..+++
T Consensus 172 ~~~~~~~~~d~------~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~------~i~iwd~~~~~ 239 (325)
T d1pgua1 172 PMRSMTVGDDG------SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR------KISCFDGKSGE 239 (325)
T ss_dssp SCEEEEEETTT------EEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC------CEEEEETTTCC
T ss_pred cceEEEeeccc------ccccccccccccceecccccCCCCccEEeeeccccceecccccccc------ceeeeeecccc
Confidence 34455566432 46778876554322 2222222222223333 356666666543 37789998876
Q ss_pred eEE-ccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceE
Q 016421 263 WRK-IEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWD 311 (390)
Q Consensus 263 W~~-~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~ 311 (390)
-.. +....... ..........+|+.++.++.-+.+.+||..+++-.
T Consensus 240 ~~~~l~~~~~~v---~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~ 286 (325)
T d1pgua1 240 FLKYIEDDQEPV---QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV 286 (325)
T ss_dssp EEEECCBTTBCC---CSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred cccccccccccc---ccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEE
Confidence 533 22111110 00001122246777778877789999999988643
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.81 E-value=0.88 Score=37.70 Aligned_cols=214 Identities=11% Similarity=0.045 Sum_probs=108.4
Q ss_pred cEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCC
Q 016421 98 HWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHP 176 (390)
Q Consensus 98 ~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~ 176 (390)
..||... ....++.+||.+.+-... .+|.... ......++.+++... +.+..||+.+++++.+......
T Consensus 30 ~~l~wvDi~~~~I~r~d~~~g~~~~~-~~~~~~~-----~i~~~~dg~l~va~~----~gl~~~d~~tg~~~~l~~~~~~ 99 (295)
T d2ghsa1 30 GTAWWFNILERELHELHLASGRKTVH-ALPFMGS-----ALAKISDSKQLIASD----DGLFLRDTATGVLTLHAELESD 99 (295)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEE-----EEEEEETTEEEEEET----TEEEEEETTTCCEEEEECSSTT
T ss_pred CEEEEEECCCCEEEEEECCCCeEEEE-ECCCCcE-----EEEEecCCCEEEEEe----CccEEeecccceeeEEeeeecC
Confidence 4455442 356788999988754332 1232111 122344677776542 4689999999998877554322
Q ss_pred ----CcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE---CCEEEEEecccCCCcc
Q 016421 177 ----RCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM---DGKFYVIGGMSSPTVS 249 (390)
Q Consensus 177 ----r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~ 249 (390)
|.....+--++.+|+.-..... ....-..|....++-+.+.. .......... +..+|+... .
T Consensus 100 ~~~~~~nd~~vd~~G~iw~~~~~~~~--~~~~g~l~~~~~g~~~~~~~---~~~~~Ng~~~s~d~~~l~~~dt------~ 168 (295)
T d2ghsa1 100 LPGNRSNDGRMHPSGALWIGTMGRKA--ETGAGSIYHVAKGKVTKLFA---DISIPNSICFSPDGTTGYFVDT------K 168 (295)
T ss_dssp CTTEEEEEEEECTTSCEEEEEEETTC--CTTCEEEEEEETTEEEEEEE---EESSEEEEEECTTSCEEEEEET------T
T ss_pred CCcccceeeEECCCCCEEEEeccccc--cccceeEeeecCCcEEEEee---ccCCcceeeecCCCceEEEeec------c
Confidence 2222222236777765432221 12233445555565544321 1111122222 345777632 2
Q ss_pred CceEEEEeCCCC--ce----EEccCCCCCCCCcCCCCCEEE-EECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccC
Q 016421 250 LTCGEEFDLETR--KW----RKIEGMYPNVNRAAQAPPLVA-VVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADL 322 (390)
Q Consensus 250 ~~~v~~yd~~~~--~W----~~~~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~ 322 (390)
...+++|+...+ .. ......+.... ..-.++ -.+|.||+..-..+.|.+||++......+. +|...
T Consensus 169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g----~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~-lP~~~-- 241 (295)
T d2ghsa1 169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKG----GMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYE-VPGKQ-- 241 (295)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSS----EEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEE-CSCSB--
T ss_pred cceeeEeeecccccccccceEEEeccCcccc----cccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEec-CCCCc--
Confidence 355777765322 11 11111111100 001233 246789988655578999999888777764 44332
Q ss_pred CCcceeEEEEe----CCEEEEEcCCC
Q 016421 323 SNGWGLAFKAC----GNELLVVGGQR 344 (390)
Q Consensus 323 ~~~~~~~~~~~----~~~lyv~GG~~ 344 (390)
...++. .+.|||.....
T Consensus 242 -----~T~~~FGG~d~~~LyvTta~~ 262 (295)
T d2ghsa1 242 -----TTCPAFIGPDASRLLVTSARE 262 (295)
T ss_dssp -----EEEEEEESTTSCEEEEEEBCT
T ss_pred -----eEEEEEeCCCCCEEEEEECCc
Confidence 122333 25799987654
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.50 E-value=0.58 Score=38.62 Aligned_cols=64 Identities=11% Similarity=-0.049 Sum_probs=38.3
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 287 DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 287 ~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
++.+++.|+..+.+..||.................. -.++.. -++++++.|+.++ .|.+||..+
T Consensus 237 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~----i~~~~~s~~~~~l~~g~~dg------~i~iwd~~~ 301 (340)
T d1tbga_ 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDF------NCNVWDALK 301 (340)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC----EEEEEECSSSCEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEeCCCeEEEEeecccccccccccccccCc----eEEEEECCCCCEEEEEECCC------EEEEEECCC
Confidence 567777777778899999887765443222221110 012222 2567777777654 477898865
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.36 E-value=0.12 Score=42.68 Aligned_cols=147 Identities=15% Similarity=0.080 Sum_probs=74.5
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCce
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
++++++.|+.+ ..+.+||..+++...+...... .....+.. +++.++.|+.++ .+..||..++..
T Consensus 147 ~~~~l~~g~~d------g~i~~~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~------~i~~~~~~~~~~ 213 (299)
T d1nr0a2 147 DKQFVAVGGQD------SKVHVYKLSGASVSEVKTIVHP-AEITSVAFSNNGAFLVATDQSR------KVIPYSVANNFE 213 (299)
T ss_dssp TSCEEEEEETT------SEEEEEEEETTEEEEEEEEECS-SCEEEEEECTTSSEEEEEETTS------CEEEEEGGGTTE
T ss_pred ccccccccccc------cccccccccccccccccccccc-cccccccccccccccccccccc------cccccccccccc
Confidence 45566666643 3478888877765443221111 11122222 455555555432 477899887665
Q ss_pred EEc-cCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEc
Q 016421 264 RKI-EGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVG 341 (390)
Q Consensus 264 ~~~-~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~G 341 (390)
... ..+.... ....+++. .++.+++.|+.-+.+.+||..+.+...+......... .-..++..++..++.|
T Consensus 214 ~~~~~~~~~h~----~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~l~s~ 286 (299)
T d1nr0a2 214 LAHTNSWTFHT----AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS---SVNSVIWLNETTIVSA 286 (299)
T ss_dssp ESCCCCCCCCS----SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTS---CEEEEEEEETTEEEEE
T ss_pred ccccccccccc----cccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCC---cEEEEEECCCCEEEEE
Confidence 432 2222110 01112222 3677777888778999999887654332211111110 1122333455566667
Q ss_pred CCCCCCCCeEEEeeecC
Q 016421 342 GQRGPEGENVVLNSWCP 358 (390)
Q Consensus 342 G~~~~~~~~~~i~~y~~ 358 (390)
|.++ .|.+||.
T Consensus 287 s~D~------~i~iWdl 297 (299)
T d1nr0a2 287 GQDS------NIKFWNV 297 (299)
T ss_dssp ETTS------CEEEEEC
T ss_pred eCCC------EEEEEec
Confidence 7653 3667775
|
| >d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Endo-alpha-sialidase domain: Endo-alpha-sialidase species: Bacteriophage K1F [TaxId: 344021]
Probab=94.30 E-value=1.1 Score=36.59 Aligned_cols=170 Identities=11% Similarity=0.072 Sum_probs=89.3
Q ss_pred cCCCCCCCcceeeeeeCCEEEEEeccCCCCCccce--EEEEEC-----CCCcEEEcCCCCCCC-cCceEEEECCEEEEEe
Q 016421 170 CEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKS--AELYDS-----TTGRWEMLPSMHSPR-RLCSGFFMDGKFYVIG 241 (390)
Q Consensus 170 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~--~~~yd~-----~t~~W~~~~~~~~~r-~~~~~~~~~~~iyv~G 241 (390)
++..|..-.-|+.+++++.-+.+|-.+++-. ..+ +..|.- ..-.-+.++.--.+- .....-.++|.+|+..
T Consensus 273 l~~i~~vte~hsfa~idn~~~avgyhn~dv~-pr~lg~lyf~daf~sp~~fvrr~i~~~y~~nasepcvk~y~gvlyl~t 351 (516)
T d1v0ea1 273 LGLIPSVTEVHSFATIDNNGFAMGYHQGDVA-PREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLIT 351 (516)
T ss_dssp CCSCTTCSEEEEEEECSSSCEEEEEEECSSS-SCEEEEEEETTTTTCTTCCEEEECCGGGCTTEEEEEEEEETTEEEEEE
T ss_pred ccccceeeeeeeEEEEcCCceEEEeccCCcC-cceeeEEEcccccCCccceeeeccchhhcCCCCCchhhhcCCEEEEEe
Confidence 3444555556788888888888876655432 223 223311 111223343221221 1233346799999996
Q ss_pred cccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec-------------------CCCeEEE
Q 016421 242 GMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY-------------------LTNMVKK 302 (390)
Q Consensus 242 G~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg-------------------~~~~v~~ 302 (390)
--..+...-+++.+-.-....|..+.-...- .+.....+-+++.||++|. +....++
T Consensus 352 rgt~~t~~gssl~~s~d~gq~w~~lrfp~nv----hhsnlpfakvgd~l~ifgsera~~ewe~gapd~ry~~syprtf~~ 427 (516)
T d1v0ea1 352 RGTRGDRLGSSLHRSRDIGQTWESLRFPHNV----HHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTFYA 427 (516)
T ss_dssp EESCTTSCCCEEEEESSTTSSCEEEECTTCC----CSSCCCEEEETTEEEEEEECSSTTCSSTTCCCCCSSCBCCEEEEE
T ss_pred ccccCCCCCccceeccccccChhhccCCccc----cccCCChhhcCCeEEEecccccccccccCCCccccccCCCceEEE
Confidence 4333333445555554445689887643221 1233347789999999983 1112221
Q ss_pred ------EeCCCCceEEccC-CCccccCCCcceeE-EEEeCCEE-EEEcCCC
Q 016421 303 ------YDKLKNTWDVLGR-LPVRADLSNGWGLA-FKACGNEL-LVVGGQR 344 (390)
Q Consensus 303 ------yd~~~~~W~~v~~-~~~~~~~~~~~~~~-~~~~~~~l-yv~GG~~ 344 (390)
|..+.-+|..|.. +-......++.|.+ +|+-++.| |+|||.+
T Consensus 428 rvnvn~ws~ddvew~nitdqiyqg~ivns~vgvgsv~vkd~~lyyifgged 478 (516)
T d1v0ea1 428 RLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGED 478 (516)
T ss_dssp EEETTTCCCTTCCCEEEEECCBCCSSSCCCSEEEEEEEETTEEEEEEEECC
T ss_pred EEccccccccceEEEeeehhhhcCceeeccccceeEEEeCCEEEEEecCcc
Confidence 3445557877653 22222222234433 44557776 7888865
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.16 E-value=1.2 Score=36.39 Aligned_cols=191 Identities=10% Similarity=0.042 Sum_probs=98.8
Q ss_pred eCCEEEEEcccccCCeEEEEECCCCcEeecCCCC----CCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCc
Q 016421 141 VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN----HPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGR 214 (390)
Q Consensus 141 ~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~----~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~ 214 (390)
.++.||+.-. ..+.+.+||+..+--+..+... ........+.. .+..++.... ....+..+++....
T Consensus 32 ~dg~i~VaD~--~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~g~~ 104 (279)
T d1q7fa_ 32 AQNDIIVADT--NNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-----PTHQIQIYNQYGQF 104 (279)
T ss_dssp TTCCEEEEEG--GGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-----GGCEEEEECTTSCE
T ss_pred CCCCEEEEEC--CCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccC-----Cccccccccccccc
Confidence 4678998753 3467889997643222222211 11112233333 2333333211 13457788887666
Q ss_pred EEEcCCCCCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEE
Q 016421 215 WEMLPSMHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYA 292 (390)
Q Consensus 215 W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v 292 (390)
+..+...... .....++ -+|.+|+.... ...+.+||+....-..+....... ....+++ -+|.+|+
T Consensus 105 ~~~~~~~~~~-~p~~~avd~~G~i~v~~~~------~~~~~~~~~~g~~~~~~g~~~~~~-----~~~~i~~d~~g~i~v 172 (279)
T d1q7fa_ 105 VRKFGATILQ-HPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKHLE-----FPNGVVVNDKQEIFI 172 (279)
T ss_dssp EEEECTTTCS-CEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTTCS-----SEEEEEECSSSEEEE
T ss_pred eeecCCCccc-ccceeccccCCcEEEEeec------cceeeEeccCCceeeccccccccc-----ccceeeeccceeEEe
Confidence 6665322111 1122222 36788887432 345777888765444432211100 1111222 3578999
Q ss_pred EecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 293 VEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 293 ~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.....|++||+..+....+..-..... . .++++ -+|+|||...... ..|.+|+++-
T Consensus 173 ~d~~~~~V~~~d~~G~~~~~~g~~g~~~~----P-~giavD~~G~i~Vad~~~~-----~~v~~f~~~G 231 (279)
T d1q7fa_ 173 SDNRAHCVKVFNYEGQYLRQIGGEGITNY----P-IGVGINSNGEILIADNHNN-----FNLTIFTQDG 231 (279)
T ss_dssp EEGGGTEEEEEETTCCEEEEESCTTTSCS----E-EEEEECTTCCEEEEECSSS-----CEEEEECTTS
T ss_pred eeccccceeeeecCCceeeeecccccccC----C-cccccccCCeEEEEECCCC-----cEEEEECCCC
Confidence 99888999999998876666643211111 0 22322 3678998754321 1367888754
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=93.46 E-value=0.52 Score=38.48 Aligned_cols=147 Identities=10% Similarity=0.028 Sum_probs=75.5
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEc-C
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML-P 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~ 219 (390)
++.+++.|+. ...+.+||..+.+...+........-.+++. -++..++.|+.++ .+.+||..++..... .
T Consensus 147 ~~~~l~~g~~--dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~------~i~~~~~~~~~~~~~~~ 218 (299)
T d1nr0a2 147 DKQFVAVGGQ--DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR------KVIPYSVANNFELAHTN 218 (299)
T ss_dssp TSCEEEEEET--TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS------CEEEEEGGGTTEESCCC
T ss_pred cccccccccc--ccccccccccccccccccccccccccccccccccccccccccccc------ccccccccccccccccc
Confidence 4555556543 4578888887776544332211111112222 2455555665432 488999887765432 2
Q ss_pred CCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCC
Q 016421 220 SMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT 297 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~ 297 (390)
.+.........+.. ++++++.|+.++ .+..||+.+.....+....... ......++..++..++.++.-
T Consensus 219 ~~~~h~~~v~~l~~s~~~~~l~sgs~dg------~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~l~s~s~D 289 (299)
T d1nr0a2 219 SWTFHTAKVACVSWSPDNVRLATGSLDN------SVIVWNMNKPSDHPIIIKGAHA---MSSVNSVIWLNETTIVSAGQD 289 (299)
T ss_dssp CCCCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTCTTSCCEEETTSST---TSCEEEEEEEETTEEEEEETT
T ss_pred cccccccccccccccccccceEEEcCCC------EEEEEECCCCCcceEEEecCCC---CCcEEEEEECCCCEEEEEeCC
Confidence 33222222223322 667777776543 4778998876543322111100 001112344556566667666
Q ss_pred CeEEEEeC
Q 016421 298 NMVKKYDK 305 (390)
Q Consensus 298 ~~v~~yd~ 305 (390)
+.|.+||.
T Consensus 290 ~~i~iWdl 297 (299)
T d1nr0a2 290 SNIKFWNV 297 (299)
T ss_dssp SCEEEEEC
T ss_pred CEEEEEec
Confidence 78888885
|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase (MMP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.17 E-value=1.4 Score=34.04 Aligned_cols=145 Identities=10% Similarity=0.004 Sum_probs=77.3
Q ss_pred eEEEeCCEEEEEcccccCCeEEEEECCCCcEe--ec----CCCCCCCcceeeee-e--CCEEEEEeccCCCCCccceEEE
Q 016421 137 ESLAVGSELLVFGRELFDFAIWKYSLVFRSWM--KC----EGMNHPRCLFGSGS-L--GSIAIIAGGSDKNGHVLKSAEL 207 (390)
Q Consensus 137 ~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~--~~----~~~~~~r~~~~~~~-~--~~~lyv~GG~~~~~~~~~~~~~ 207 (390)
+++..++.+|+|-|. .+|+.+....... .+ +.+|... .++. . ++++|++-| +..++
T Consensus 16 Av~~~~G~~y~Fkg~----~~wr~~~~~~~~~p~~i~~~w~glp~~I---DAAf~~~~~~~~yfFkG--------~~y~~ 80 (195)
T d1su3a2 16 AITTIRGEVMFFKDR----FYMRTNPFYPEVELNFISVFWPQLPNGL---EAAYEFADRDEVRFFKG--------NKYWA 80 (195)
T ss_dssp EEEEETTEEEEEETT----EEEECCTTSSSCEEEEGGGTCTTSCSSC---CEEEEEGGGTEEEEEET--------TEEEE
T ss_pred EEEEcCCeEEEEeCC----EEEEeeCCCCccCccchHhhCcCCCCcc---cceEEecCCcEEEEECC--------cEEEE
Confidence 455678999999774 3455444433221 11 1223222 2232 2 589999966 34788
Q ss_pred EECCCCc---EEEcC---CCCCCCcCceEEE-E--CCEEEEEecccCCCccCceEEEEeCCCCceE-----EccC-CCCC
Q 016421 208 YDSTTGR---WEMLP---SMHSPRRLCSGFF-M--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWR-----KIEG-MYPN 272 (390)
Q Consensus 208 yd~~t~~---W~~~~---~~~~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-----~~~~-~~~~ 272 (390)
|+..+.. -+.+. .+|......-+|. . ++++|++-|. ..++||..+++=. .+.. .+.
T Consensus 81 y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG~--------~y~ry~~~~~~vd~gyPk~I~~~w~G- 151 (195)
T d1su3a2 81 VQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN--------KYWRYDEYKRSMDPGYPKMIAHDFPG- 151 (195)
T ss_dssp EETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT--------EEEEEETTTTEECSSCSEEHHHHSTT-
T ss_pred EcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeCC--------EEEEEeccCccccCCcccccccccCC-
Confidence 8743211 12211 1232222222332 2 6799999653 4688998876421 1111 010
Q ss_pred CCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCce
Q 016421 273 VNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTW 310 (390)
Q Consensus 273 ~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W 310 (390)
. +...-++...+|++|++-| +..++||..+++=
T Consensus 152 v---p~~iDAAf~~~g~~YfFkg--~~y~r~~~~~~~v 184 (195)
T d1su3a2 152 I---GHKVDAVFMKDGFFYFFHG--TRQYKFDPKTKRI 184 (195)
T ss_dssp S---CSCCSEEEEETTEEEEEET--TEEEEEETTTTEE
T ss_pred C---CCCccEEEEECCeEEEEEC--CEEEEEeCCcCEE
Confidence 0 1122245667999999966 5889999877653
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.14 E-value=2.1 Score=35.99 Aligned_cols=231 Identities=13% Similarity=0.069 Sum_probs=101.1
Q ss_pred EEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCc
Q 016421 99 WVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRC 178 (390)
Q Consensus 99 ~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~ 178 (390)
.|...+....+..+|....+......-...... ......++..++.|+ ....+.++|..+..-...........
T Consensus 135 ~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~----~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~ 208 (388)
T d1erja_ 135 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIY----SLDYFPSGDKLVSGS--GDRTVRIWDLRTGQCSLTLSIEDGVT 208 (388)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE----EEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEECSSCEE
T ss_pred cceeccccccccccccccccccccccccccccc----ccccccccccccccc--cceeeeeeeccccccccccccccccc
Confidence 333333445667777766654332211110000 001112333344443 23467888887765443322221111
Q ss_pred ceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEc-CCCC---C-CCcCceEEEE--CCEEEEEecccCCCccCc
Q 016421 179 LFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML-PSMH---S-PRRLCSGFFM--DGKFYVIGGMSSPTVSLT 251 (390)
Q Consensus 179 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~~---~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 251 (390)
.......++.+++.|+.++ .+.+||..++..... .... . .......+.. +++..+.|+.+ .
T Consensus 209 ~~~~~~~~~~~l~~~~~d~------~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d------~ 276 (388)
T d1erja_ 209 TVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD------R 276 (388)
T ss_dssp EEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT------S
T ss_pred cccccCCCCCeEEEEcCCC------eEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECC------C
Confidence 1111122556677776543 378899888775432 1111 1 1111122222 55666666543 2
Q ss_pred eEEEEeCCCCceEEccCCCCCC------CCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCC
Q 016421 252 CGEEFDLETRKWRKIEGMYPNV------NRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSN 324 (390)
Q Consensus 252 ~v~~yd~~~~~W~~~~~~~~~~------~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~ 324 (390)
.+..||..+..-......+... ..+......++. -++++++.|+.-+.|.+||..+.+-.. .+....
T Consensus 277 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~--~l~~H~---- 350 (388)
T d1erja_ 277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL--MLQGHR---- 350 (388)
T ss_dssp EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE--EEECCS----
T ss_pred cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE--EEeCCC----
Confidence 4667777655432211111100 000000011111 256777777777899999988765322 222111
Q ss_pred cceeEEEEe-------CCEEEEEcCCCCCCCCeEEEeeecCC
Q 016421 325 GWGLAFKAC-------GNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 325 ~~~~~~~~~-------~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
+.-.++... ++.+++.||.++ .|.+|+.+
T Consensus 351 ~~V~~~~~~~~~~~spd~~~l~s~s~Dg------~I~iW~~~ 386 (388)
T d1erja_ 351 NSVISVAVANGSSLGPEYNVFATGSGDC------KARIWKYK 386 (388)
T ss_dssp SCEEEEEECSSCTTCTTCEEEEEEETTS------EEEEEEEE
T ss_pred CCEEEEEEecCcccCCCCCEEEEEeCCC------EEEEEeee
Confidence 011122221 577888888664 47778764
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.00 E-value=1.9 Score=35.24 Aligned_cols=174 Identities=10% Similarity=0.018 Sum_probs=88.1
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEEC
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMD 234 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 234 (390)
..+..||..+.+....................+..++.|+.+ ..+.+||..++.....- ........++..+
T Consensus 181 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~~i~i~d~~~~~~~~~~--~~h~~~v~~~~~~ 252 (355)
T d1nexb2 181 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD------TTIRIWDLENGELMYTL--QGHTALVGLLRLS 252 (355)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT------SCEEEEETTTCCEEEEE--CCCSSCCCEEEEC
T ss_pred ceeeeeecccccceeeeeccccccccccccccceeeeccccc------ceEEeeecccccccccc--ccccccccccccc
Confidence 467788887776543322222222212222245555555543 24788998877643321 1111222345566
Q ss_pred CEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEcc
Q 016421 235 GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 235 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~ 314 (390)
++..+.|+.++ .+..||..+..-...... . ..........++++++.| .-+.|.+||.++++....
T Consensus 253 ~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~- 318 (355)
T d1nexb2 253 DKFLVSAAADG------SIRGWDANDYSRKFSYHH-T-----NLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHA- 318 (355)
T ss_dssp SSEEEEECTTS------EEEEEETTTCCEEEEEEC-T-----TCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCS-
T ss_pred cceeeeeeccc------ccccccccccceeccccc-C-----CceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEE-
Confidence 77667666542 467788877643211110 1 111122445677766555 467899999988764221
Q ss_pred CCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecC
Q 016421 315 RLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~ 358 (390)
.+.... ..-.++...++.+++.|+.++. .-|++||.
T Consensus 319 ~~~~~~----~~V~~v~~~~~~~~~~~s~dg~----~~l~~~df 354 (355)
T d1nexb2 319 NILKDA----DQIWSVNFKGKTLVAAVEKDGQ----SFLEILDF 354 (355)
T ss_dssp CTTTTC----SEEEEEEEETTEEEEEEESSSC----EEEEEEEC
T ss_pred EecCCC----CCEEEEEEcCCeEEEEEECCCc----EEEEEEeC
Confidence 111111 1113344456777666665532 23667765
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=1.9 Score=34.99 Aligned_cols=172 Identities=10% Similarity=0.091 Sum_probs=90.5
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEEC
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMD 234 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 234 (390)
..+.+++..+.+....-... .............++.|+.+ ..+.++|.....-... +............+
T Consensus 117 ~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d------~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~ 186 (342)
T d2ovrb2 117 ATLRVWDIETGQCLHVLMGH--VAAVRCVQYDGRRVVSGAYD------FMVKVWDPETETCLHT--LQGHTNRVYSLQFD 186 (342)
T ss_dssp SEEEEEESSSCCEEEEEECC--SSCEEEEEECSSCEEEEETT------SCEEEEEGGGTEEEEE--ECCCSSCEEEEEEC
T ss_pred eeEEEeecccccceeeeecc--cccceeeccccceeeeecCC------CeEEEeecccceeeEE--EcCcccccccccCC
Confidence 45667777766554332211 11122223344455555543 2366777765543221 11112223344567
Q ss_pred CEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEE-c
Q 016421 235 GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDV-L 313 (390)
Q Consensus 235 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~-v 313 (390)
+...+.|+.++ .+..||+.+.+-........ ........++.+++.|+..+.+.+||....+-.. +
T Consensus 187 ~~~l~s~~~dg------~i~~~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 253 (342)
T d2ovrb2 187 GIHVVSGSLDT------SIRVWDVETGNCIHTLTGHQ-------SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTL 253 (342)
T ss_dssp SSEEEEEETTS------CEEEEETTTCCEEEEECCCC-------SCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCC------eEEEeecccceeeeEecccc-------cceeEEecCCCEEEEEcCCCEEEEEecccccccccc
Confidence 77777776543 46778888765432221111 1112334455666777777889999988765443 2
Q ss_pred cCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 314 GRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
....... .....+..++.+++.|+.++ .|.+||.++
T Consensus 254 ~~~~~~~-----~~~~~~~~~~~~~~s~s~Dg------~i~iwd~~t 289 (342)
T d2ovrb2 254 QGPNKHQ-----SAVTCLQFNKNFVITSSDDG------TVKLWDLKT 289 (342)
T ss_dssp CSTTSCS-----SCEEEEEECSSEEEEEETTS------EEEEEETTT
T ss_pred cccceee-----eceeecccCCCeeEEEcCCC------EEEEEECCC
Confidence 2211111 11334455777778887664 588999987
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=92.80 E-value=0.49 Score=43.50 Aligned_cols=128 Identities=16% Similarity=0.239 Sum_probs=74.2
Q ss_pred eEEEECCEEEEEecccCCCccCceEEEEeCCCCc--eEEccCCCCC---CCCcCCCCCEEEEECCEEEEEecCCCeEEEE
Q 016421 229 SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPN---VNRAAQAPPLVAVVDNQLYAVEYLTNMVKKY 303 (390)
Q Consensus 229 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~---~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~y 303 (390)
+-++.+|+||+.... ..++++|.+|.+ |+.-...+.. ...........+..++++|+.. ..+.++.+
T Consensus 61 tPiv~~g~vyv~t~~-------~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~l~Al 132 (560)
T d1kv9a2 61 TPLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGT-LDGRLIAL 132 (560)
T ss_dssp CCEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEEC-TTSEEEEE
T ss_pred CCEEECCEEEEECCC-------CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEe-CCCEEEEE
Confidence 346889999997542 458889999874 8753322210 0000112234667788887764 34679999
Q ss_pred eCCCCc--eEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEe
Q 016421 304 DKLKNT--WDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVL 372 (390)
Q Consensus 304 d~~~~~--W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~ 372 (390)
|..+.+ |+.-..-+..... ...+-++.++.+++-+... .....-.|..||..+ ++..|+.-
T Consensus 133 da~tG~~~w~~~~~~~~~~~~---~~~~p~v~~~~vivg~~~~-~~~~~G~v~a~D~~T----G~~~W~~~ 195 (560)
T d1kv9a2 133 DAKTGKAIWSQQTTDPAKPYS---ITGAPRVVKGKVIIGNGGA-EYGVRGFVSAYDADT----GKLAWRFY 195 (560)
T ss_dssp ETTTCCEEEEEECSCTTSSCB---CCSCCEEETTEEEECCBCT-TTCCBCEEEEEETTT----CCEEEEEE
T ss_pred ECCCCcEEeccCccCccccee---eeeeeeeecCcccccccce-eccccceEEEEECCC----ceEEeeee
Confidence 988874 8764322211111 1123446677777644322 222334688999999 56678743
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=92.54 E-value=2.4 Score=35.20 Aligned_cols=185 Identities=12% Similarity=0.043 Sum_probs=92.5
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcc--cc-----------cCCeEEEEECCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGR--EL-----------FDFAIWKYSLVF 164 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg--~~-----------~~~~~~~yd~~t 164 (390)
..+|+......+..+|+.......+................+..++.||+... .. ....++++++..
T Consensus 83 ~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg 162 (314)
T d1pjxa_ 83 NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG 162 (314)
T ss_dssp SEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS
T ss_pred CEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC
Confidence 45666655667888998776544333222222111111223344678887531 10 123677787753
Q ss_pred CcEeecC-CCCCCCcceeeee-eC-C----EEEEEeccCCCCCccceEEEEECCCCc---EEE-cCCCCCCC-cCceEEE
Q 016421 165 RSWMKCE-GMNHPRCLFGSGS-LG-S----IAIIAGGSDKNGHVLKSAELYDSTTGR---WEM-LPSMHSPR-RLCSGFF 232 (390)
Q Consensus 165 ~~W~~~~-~~~~~r~~~~~~~-~~-~----~lyv~GG~~~~~~~~~~~~~yd~~t~~---W~~-~~~~~~~r-~~~~~~~ 232 (390)
+...+. .+..+. +.+. -+ + .+|+... ....+++||...+. ++. ...++... ...-...
T Consensus 163 -~~~~~~~~~~~pN---Gi~~~~d~d~~~~~lyv~d~------~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGia 232 (314)
T d1pjxa_ 163 -QMIQVDTAFQFPN---GIAVRHMNDGRPYQLIVAET------PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD 232 (314)
T ss_dssp -CEEEEEEEESSEE---EEEEEECTTSCEEEEEEEET------TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred -ceeEeeCCcceee---eeEECCCCCcceeEEEEEee------cccceEEeeccCccccceeeEEEEccccccccceeeE
Confidence 333322 222221 1221 11 1 5777642 23568888754332 221 12222221 1223333
Q ss_pred E--CCEEEEEecccCCCccCceEEEEeCCCCceE-EccCCCCCCCCcCCCCCEEEEEC---CEEEEEecCCCeEEEEeCC
Q 016421 233 M--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWR-KIEGMYPNVNRAAQAPPLVAVVD---NQLYAVEYLTNMVKKYDKL 306 (390)
Q Consensus 233 ~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~---g~l~v~gg~~~~v~~yd~~ 306 (390)
+ +|+|||.... ...|.+||+.+.... .+. .|.. .++.+.++ +.|||.....+.|++++..
T Consensus 233 vD~~GnlyVa~~~------~g~I~~~dp~~g~~~~~i~-~p~~-------~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 233 FDEDNNLLVANWG------SSHIEVFGPDGGQPKMRIR-CPFE-------KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EBTTCCEEEEEET------TTEEEEECTTCBSCSEEEE-CSSS-------CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EecCCcEEEEEcC------CCEEEEEeCCCCEEEEEEE-CCCC-------CEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 3 7899987321 346899999876643 222 2211 11233333 2699998877899998864
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=92.42 E-value=2.5 Score=35.10 Aligned_cols=223 Identities=9% Similarity=-0.035 Sum_probs=106.8
Q ss_pred CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe---CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCC---cce
Q 016421 107 RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV---GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR---CLF 180 (390)
Q Consensus 107 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r---~~~ 180 (390)
..++.+|+.+..+..+....... .. .....++. ++.+|+..+ .+.+.++|+.......+......+ ...
T Consensus 46 g~I~r~d~~~~~~~~~~~~~~~~-~~-g~P~Gl~~~~dg~~l~vad~---~~~i~~~~~~g~~~~~~~~~~~g~~~~~pn 120 (314)
T d1pjxa_ 46 GEILRIDLKTGKKTVICKPEVNG-YG-GIPAGCQCDRDANQLFVADM---RLGLLVVQTDGTFEEIAKKDSEGRRMQGCN 120 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEETT-EE-CCEEEEEECSSSSEEEEEET---TTEEEEEETTSCEEECCSBCTTSCBCBCCC
T ss_pred CEEEEEECCCCcEEEEECCcccc-CC-CcceeEEEeCCCCEEEEEEC---CCeEEEEeCCCcEEEEEeccccccccCCCc
Confidence 35789999988765443211110 00 01122333 346777654 346888998877654433222111 111
Q ss_pred eee-eeCCEEEEEec--cCC-------CCCccceEEEEECCCCcEEEcC-CCCCCCcCceEEE-ECC-----EEEEEecc
Q 016421 181 GSG-SLGSIAIIAGG--SDK-------NGHVLKSAELYDSTTGRWEMLP-SMHSPRRLCSGFF-MDG-----KFYVIGGM 243 (390)
Q Consensus 181 ~~~-~~~~~lyv~GG--~~~-------~~~~~~~~~~yd~~t~~W~~~~-~~~~~r~~~~~~~-~~~-----~iyv~GG~ 243 (390)
..+ --++.+|+..- ... .......++.+++.. +...+. .+..+ -+.+. -++ .||+.-.
T Consensus 121 dl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~~~~p---NGi~~~~d~d~~~~~lyv~d~- 195 (314)
T d1pjxa_ 121 DCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQFP---NGIAVRHMNDGRPYQLIVAET- 195 (314)
T ss_dssp EEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEEESSE---EEEEEEECTTSCEEEEEEEET-
T ss_pred EEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCCccee---eeeEECCCCCcceeEEEEEee-
Confidence 222 23578888631 110 001234677887743 444332 22221 12222 222 5777632
Q ss_pred cCCCccCceEEEEeCCCCc---eEE-ccCCCCCCCCcCCCCCEEE-EECCEEEEEecCCCeEEEEeCCCCceEEccCCCc
Q 016421 244 SSPTVSLTCGEEFDLETRK---WRK-IEGMYPNVNRAAQAPPLVA-VVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPV 318 (390)
Q Consensus 244 ~~~~~~~~~v~~yd~~~~~---W~~-~~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~ 318 (390)
....+++||...+. +.+ ...++......+ -.++ -.+|+||+.....+.|++||+++..-...-.+|.
T Consensus 196 -----~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~p---dGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~ 267 (314)
T d1pjxa_ 196 -----PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA---DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF 267 (314)
T ss_dssp -----TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE---EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS
T ss_pred -----cccceEEeeccCccccceeeEEEEccccccccc---eeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCC
Confidence 24567888765432 221 122222110000 0233 2478999987667899999999876432212232
Q ss_pred cccCCCcceeEEEEeC---CEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 319 RADLSNGWGLAFKACG---NELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 319 ~~~~~~~~~~~~~~~~---~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.. .+.++++ +.|||.....+ .|+.++...
T Consensus 268 ~~-------~t~~afg~d~~~lyVt~~~~g------~i~~~~~~~ 299 (314)
T d1pjxa_ 268 EK-------PSNLHFKPQTKTIFVTEHENN------AVWKFEWQR 299 (314)
T ss_dssp SC-------EEEEEECTTSSEEEEEETTTT------EEEEEECSS
T ss_pred CC-------EEEEEEeCCCCEEEEEECCCC------cEEEEECCC
Confidence 11 1222332 36999765332 466666544
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=91.98 E-value=1.2 Score=40.89 Aligned_cols=126 Identities=13% Similarity=0.165 Sum_probs=73.0
Q ss_pred EEECCEEEEEecccCCCccCceEEEEeCCCCc--eEEccCCCCCCC---CcCCCCCEEEEECCEEEEEecCCCeEEEEeC
Q 016421 231 FFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVN---RAAQAPPLVAVVDNQLYAVEYLTNMVKKYDK 305 (390)
Q Consensus 231 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~---~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~ 305 (390)
++.+|+||+... ...++++|.+|.+ |+.-...+.... ........+++.++++|+.. ....++++|.
T Consensus 74 iv~~g~vyv~t~-------~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t-~~g~l~alda 145 (573)
T d1kb0a2 74 VVVDGIMYVSAS-------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGA-WDGRLIALDA 145 (573)
T ss_dssp EEETTEEEEECG-------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEEC-TTSEEEEEET
T ss_pred EEECCEEEEECC-------CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEe-cccceeeecc
Confidence 568999999743 2358889998874 875332221100 00111224667888888764 3467899999
Q ss_pred CCCc--eEEcc-CCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEe
Q 016421 306 LKNT--WDVLG-RLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVL 372 (390)
Q Consensus 306 ~~~~--W~~v~-~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~ 372 (390)
++.+ |+.-. ..+..... ...+-+++++.+|+-+ ..........|..||..+ +...|+.-
T Consensus 146 ~tG~~~W~~~~~~~~~~~~~---~~~~p~v~~~~vivg~-~~~~~~~~G~v~a~D~~T----G~~~W~~~ 207 (573)
T d1kb0a2 146 ATGKEVWHQNTFEGQKGSLT---ITGAPRVFKGKVIIGN-GGAEYGVRGYITAYDAET----GERKWRWF 207 (573)
T ss_dssp TTCCEEEEEETTTTCCSSCB---CCSCCEEETTEEEECC-BCTTTCCBCEEEEEETTT----CCEEEEEE
T ss_pred ccccceecccCccCCcceEE---eecceEEEeccEEEee-ccccccccceEEEEecCC----ccceeeee
Confidence 8875 87632 21211110 1123446688876643 332223344689999999 56678743
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.29 E-value=2.7 Score=33.11 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=41.8
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
+..++..++.|+. +..+.+||..+.+-... +........+...++++++.|+.++ .+.+++..++.....
T Consensus 21 ~~~d~~~l~sgs~--Dg~i~vWd~~~~~~~~~--l~~H~~~V~~v~~~~~~l~s~s~D~------~i~~~~~~~~~~~~~ 90 (293)
T d1p22a2 21 LQYDDQKIVSGLR--DNTIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSSDS------TVRVWDVNTGEMLNT 90 (293)
T ss_dssp EECCSSEEEEEES--SSCEEEEESSSCCEEEE--ECCCSSCEEEEECCSSEEEEEETTS------CEEEEESSSCCEEEE
T ss_pred EEEcCCEEEEEeC--CCeEEEEECCCCcEEEE--EecCCCCEeeeecccceeecccccc------ccccccccccccccc
Confidence 3446666666653 45788899887764332 2222222233445777777777553 377888888776543
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.91 E-value=2.6 Score=32.27 Aligned_cols=146 Identities=11% Similarity=0.039 Sum_probs=79.0
Q ss_pred eEEEeCCEEEEEcccccCCeEEEEECCCCcEee--c----CCCCCCCcceeeee---eCCEEEEEeccCCCCCccceEEE
Q 016421 137 ESLAVGSELLVFGRELFDFAIWKYSLVFRSWMK--C----EGMNHPRCLFGSGS---LGSIAIIAGGSDKNGHVLKSAEL 207 (390)
Q Consensus 137 ~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~--~----~~~~~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~ 207 (390)
++...++.+|+|-|. .+|+++.....+.. + +.+|.. ..++. .++++|++-|. .+++
T Consensus 13 Av~~~~g~~y~Fkg~----~~wr~~~~~~~~~p~~i~~~w~~lp~~---IDAAf~~~~~~~~yffkg~--------~~w~ 77 (192)
T d1pexa_ 13 AITSLRGETMIFKDR----FFWRLHPQQVDAELFLTKSFWPELPNR---IDAAYEHPSHDLIFIFRGR--------KFWA 77 (192)
T ss_dssp EEEEETTEEEEEETT----EEEEECSSSSCCEEEEHHHHCTTSCSS---CCEEEEETTTTEEEEEETT--------EEEE
T ss_pred EEEEcCCeEEEEECC----EEEEEcCCCCCCcccchhhhCcCCCCc---ccceEEEcCCCEEEEEcCC--------EEEE
Confidence 355678999999774 45555544332211 1 223322 22222 26889998663 4788
Q ss_pred EECCCCcE---EEcCCC--CCCCcCceEEEE---CCEEEEEecccCCCccCceEEEEeCCCCceE-----EccC-CCCCC
Q 016421 208 YDSTTGRW---EMLPSM--HSPRRLCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFDLETRKWR-----KIEG-MYPNV 273 (390)
Q Consensus 208 yd~~t~~W---~~~~~~--~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-----~~~~-~~~~~ 273 (390)
|+..+-.. +.+... |.+-....+|.. ++++|++-|. ..++||..++.=. .+.. .+..
T Consensus 78 y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg~--------~y~~y~~~~~~~~~~~pk~I~~~w~gv- 148 (192)
T d1pexa_ 78 LNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN--------QVWRYDDTNHIMDKDYPRLIEEDFPGI- 148 (192)
T ss_dssp ESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT--------EEEEEETTTTEECSSCCCBHHHHSTTS-
T ss_pred EcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeCC--------EEEEEcCccccccCCCcEEHhhcCCCC-
Confidence 87544332 233332 222122233332 6899999543 4678887765421 1110 1110
Q ss_pred CCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceE
Q 016421 274 NRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWD 311 (390)
Q Consensus 274 ~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~ 311 (390)
+....++...+|.+|++-| +..++||..+++=.
T Consensus 149 ---p~~vdAa~~~~g~~YfF~g--~~y~r~~~~~~~v~ 181 (192)
T d1pexa_ 149 ---GDKVDAVYEKNGYIYFFNG--PIQFEYSIWSNRIV 181 (192)
T ss_dssp ---CSCCSEEEEETTEEEEEET--TEEEEEETTTTEEE
T ss_pred ---CCCceEEEEeCCEEEEEEC--CEEEEEeCCcCeEc
Confidence 1112245567999999965 58899998876633
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.54 E-value=2.8 Score=32.06 Aligned_cols=143 Identities=10% Similarity=0.001 Sum_probs=75.0
Q ss_pred eeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEE------cCCCCCCCcCceEEEE--CCEEEEEecccCCCccCce
Q 016421 181 GSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM------LPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTC 252 (390)
Q Consensus 181 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~------~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 252 (390)
+++.+++++|+|-|. .+|.++.....+.. -+.+|..- . ++... ++++|++-|. .
T Consensus 13 Av~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~i~~~w~~lp~~I-D-AAf~~~~~~~~yffkg~--------~ 74 (192)
T d1pexa_ 13 AITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPNRI-D-AAYEHPSHDLIFIFRGR--------K 74 (192)
T ss_dssp EEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCSSC-C-EEEEETTTTEEEEEETT--------E
T ss_pred EEEEcCCeEEEEECC--------EEEEEcCCCCCCcccchhhhCcCCCCcc-c-ceEEEcCCCEEEEEcCC--------E
Confidence 566779999999653 24555443322221 12344321 1 22222 6889988553 3
Q ss_pred EEEEeCCCCce---EEccCCCCCCCCcCCCCCEEEE--ECCEEEEEecCCCeEEEEeCCCCce-----EEcc----CCCc
Q 016421 253 GEEFDLETRKW---RKIEGMYPNVNRAAQAPPLVAV--VDNQLYAVEYLTNMVKKYDKLKNTW-----DVLG----RLPV 318 (390)
Q Consensus 253 v~~yd~~~~~W---~~~~~~~~~~~~~~~~~~~~~~--~~g~l~v~gg~~~~v~~yd~~~~~W-----~~v~----~~~~ 318 (390)
+++|+..+... ..+...-.+.. ...--++.. .++++|++-| +..++||..++.= ..|. .+|.
T Consensus 75 ~w~y~~~~~~~gyPk~i~~~~~~~~--~~~idaA~~~~~~~~~y~Fkg--~~y~~y~~~~~~~~~~~pk~I~~~w~gvp~ 150 (192)
T d1pexa_ 75 FWALNGYDILEGYPKKISELGLPKE--VKKISAAVHFEDTGKTLLFSG--NQVWRYDDTNHIMDKDYPRLIEEDFPGIGD 150 (192)
T ss_dssp EEEESTTCCCTTCSEESTTTTCCTT--CCCCCEEEECTTTSEEEEEET--TEEEEEETTTTEECSSCCCBHHHHSTTSCS
T ss_pred EEEEcCCcccCCCCeEeeeeecCCC--CCCccEEEEECCCCEEEEEeC--CEEEEEcCccccccCCCcEEHhhcCCCCCC
Confidence 67776544332 12222110000 111112333 2589999965 5789998776531 1121 2222
Q ss_pred cccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 319 RADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.. .|+...+|++|++-|. ..+.||..+
T Consensus 151 ~v-------dAa~~~~g~~YfF~g~--------~y~r~~~~~ 177 (192)
T d1pexa_ 151 KV-------DAVYEKNGYIYFFNGP--------IQFEYSIWS 177 (192)
T ss_dssp CC-------SEEEEETTEEEEEETT--------EEEEEETTT
T ss_pred Cc-------eEEEEeCCEEEEEECC--------EEEEEeCCc
Confidence 21 2344679999999884 367888765
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.51 E-value=3.7 Score=33.35 Aligned_cols=132 Identities=14% Similarity=0.096 Sum_probs=69.8
Q ss_pred eEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEE
Q 016421 204 SAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLV 283 (390)
Q Consensus 204 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 283 (390)
.+..+|..+.+...................++...+.|+.+ ..+..||..+..-...-.... .....
T Consensus 182 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~~i~i~d~~~~~~~~~~~~h~-------~~v~~ 248 (355)
T d1nexb2 182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD------TTIRIWDLENGELMYTLQGHT-------ALVGL 248 (355)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT------SCEEEEETTTCCEEEEECCCS-------SCCCE
T ss_pred eeeeeecccccceeeeeccccccccccccccceeeeccccc------ceEEeeecccccccccccccc-------ccccc
Confidence 47788888776544322222211111122245555555543 246778888766433211111 11124
Q ss_pred EEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCC
Q 016421 284 AVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSG 361 (390)
Q Consensus 284 ~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~ 361 (390)
+..+++.++.|+..+.|..||..+..-.....-. .. ........++++++.|. ++ .|.+||.+++
T Consensus 249 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~l~~g~-d~------~i~vwd~~tg 313 (355)
T d1nexb2 249 LRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHT-NL-----SAITTFYVSDNILVSGS-EN------QFNIYNLRSG 313 (355)
T ss_dssp EEECSSEEEEECTTSEEEEEETTTCCEEEEEECT-TC-----CCCCEEEECSSEEEEEE-TT------EEEEEETTTC
T ss_pred cccccceeeeeecccccccccccccceecccccC-Cc-----eEEEEEcCCCCEEEEEe-CC------EEEEEECCCC
Confidence 4566777788888889999998776522211110 11 11233345777766554 32 5889998873
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.24 E-value=3.8 Score=33.14 Aligned_cols=142 Identities=16% Similarity=0.184 Sum_probs=72.0
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCce
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
.+.+++.|+.+ ..+.+||..++.-... +.........+.. ++.+++.|+.++ .+..||......
T Consensus 195 ~~~~~~~~~~d------~~v~i~d~~~~~~~~~--~~~h~~~i~~v~~~p~~~~l~s~s~d~------~i~~~~~~~~~~ 260 (340)
T d1tbga_ 195 DTRLFVSGACD------ASAKLWDVREGMCRQT--FTGHESDINAICFFPNGNAFATGSDDA------TCRLFDLRADQE 260 (340)
T ss_dssp TSSEEEEEETT------TEEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEE
T ss_pred ccceeEEeecC------ceEEEEECCCCcEEEE--EeCCCCCeEEEEECCCCCEEEEEeCCC------eEEEEeeccccc
Confidence 44555655543 3477888877653321 1111112222222 566666666543 366788887665
Q ss_pred EEccCCCCCCCCcCCCCCEEE-EECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-CCEEEEEc
Q 016421 264 RKIEGMYPNVNRAAQAPPLVA-VVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-GNELLVVG 341 (390)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~~~lyv~G 341 (390)
........... ....++ .-++++++.|+..+.|.+||..+.+ .+..+.... +.-.+++.. ++.+++.|
T Consensus 261 ~~~~~~~~~~~----~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~H~----~~V~~l~~s~d~~~l~s~ 330 (340)
T d1tbga_ 261 LMTYSHDNIIC----GITSVSFSKSGRLLLAGYDDFNCNVWDALKAD--RAGVLAGHD----NRVSCLGVTDDGMAVATG 330 (340)
T ss_dssp EEEECCTTCCS----CEEEEEECSSSCEEEEEETTSCEEEEETTTCC--EEEEECCCS----SCEEEEEECTTSSCEEEE
T ss_pred ccccccccccC----ceEEEEECCCCCEEEEEECCCEEEEEECCCCc--EEEEEcCCC----CCEEEEEEeCCCCEEEEE
Confidence 43322222110 001122 2256777788778889999987654 333332111 111222222 56677777
Q ss_pred CCCCCCCCeEEEeeec
Q 016421 342 GQRGPEGENVVLNSWC 357 (390)
Q Consensus 342 G~~~~~~~~~~i~~y~ 357 (390)
|.++ .|.+||
T Consensus 331 s~Dg------~v~iWd 340 (340)
T d1tbga_ 331 SWDS------FLKIWN 340 (340)
T ss_dssp ETTS------CEEEEC
T ss_pred ccCC------EEEEeC
Confidence 7664 366665
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=89.99 E-value=2.1 Score=35.30 Aligned_cols=138 Identities=14% Similarity=-0.021 Sum_probs=77.0
Q ss_pred eEEEEECCCCcEEEcCCCCCCCcCceEEE--ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCC
Q 016421 204 SAELYDSTTGRWEMLPSMHSPRRLCSGFF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPP 281 (390)
Q Consensus 204 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 281 (390)
++++||..++...+++. ..+. ..+. -+|+..+++|...+ ..+.+||..++.-..+....... ..
T Consensus 25 ~v~v~d~~~~~~~~~~~--~~~v--~~~~~spDg~~l~~~~~~~g----~~v~v~d~~~~~~~~~~~~~~~v------~~ 90 (360)
T d1k32a3 25 QAFIQDVSGTYVLKVPE--PLRI--RYVRRGGDTKVAFIHGTREG----DFLGIYDYRTGKAEKFEENLGNV------FA 90 (360)
T ss_dssp EEEEECTTSSBEEECSC--CSCE--EEEEECSSSEEEEEEEETTE----EEEEEEETTTCCEEECCCCCCSE------EE
T ss_pred eEEEEECCCCcEEEccC--CCCE--EEEEECCCCCEEEEEEcCCC----CEEEEEECCCCcEEEeeCCCceE------Ee
Confidence 58889998888887642 2222 2222 27877666554331 34788999998877765433211 01
Q ss_pred EEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCC----CCCCeEEEeeec
Q 016421 282 LVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRG----PEGENVVLNSWC 357 (390)
Q Consensus 282 ~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~----~~~~~~~i~~y~ 357 (390)
....-+|+.++.++..+.++.||.++.+...+........ ... ...-+++.+++.+... .......+++||
T Consensus 91 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d 165 (360)
T d1k32a3 91 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI----TDF-TISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 165 (360)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC----CCE-EECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred eeecccccccceeccccccccccccccceeeeeecccccc----cch-hhccceeeeeeeccccccceeeccccceeeec
Confidence 1223367777777777889999998887655433222211 111 2223555555443221 122334566777
Q ss_pred CCC
Q 016421 358 PKS 360 (390)
Q Consensus 358 ~~~ 360 (390)
..+
T Consensus 166 ~~~ 168 (360)
T d1k32a3 166 MEG 168 (360)
T ss_dssp TTT
T ss_pred ccc
Confidence 765
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.83 E-value=3.9 Score=32.58 Aligned_cols=182 Identities=14% Similarity=-0.013 Sum_probs=95.0
Q ss_pred eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 141 VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 141 ~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
.++.||+.... ...+.+++..+..+... ........++++ .++.+|+..- ....+..+++....-....
T Consensus 66 ~~g~i~v~d~~--~~~i~~~~~~~~~~~~~--~~~~~~p~~iavd~~g~i~v~d~------~~~~~~~~~~~~~~~~~~~ 135 (260)
T d1rwia_ 66 GAGTVYVTDFN--NRVVTLAAGSNNQTVLP--FDGLNYPEGLAVDTQGAVYVADR------GNNRVVKLAAGSKTQTVLP 135 (260)
T ss_dssp TTCCEEEEETT--TEEEEECTTCSCCEECC--CCSCCSEEEEEECTTCCEEEEEG------GGTEEEEECTTCSSCEECC
T ss_pred CCCCEEEeeee--eceeeeeeeccceeeee--eeeeeecccccccccceeEeecc------ccccccccccccceeeeee
Confidence 36778876532 22333444444444321 111122234433 3568888642 1345777877665533332
Q ss_pred C--CCCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEec
Q 016421 220 S--MHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEY 295 (390)
Q Consensus 220 ~--~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg 295 (390)
. +..+ .+.+. -+|++|+.... ...+..||+.......+...... ....+++ -+|.||+...
T Consensus 136 ~~~~~~p---~~i~~~~~g~~~v~~~~------~~~i~~~d~~~~~~~~~~~~~~~------~p~gi~~d~~g~l~vsd~ 200 (260)
T d1rwia_ 136 FTGLNDP---DGVAVDNSGNVYVTDTD------NNRVVKLEAESNNQVVLPFTDIT------APWGIAVDEAGTVYVTEH 200 (260)
T ss_dssp CCSCCSC---CEEEECTTCCEEEEEGG------GTEEEEECTTTCCEEECCCSSCC------SEEEEEECTTCCEEEEET
T ss_pred ecccCCc---ceeeecCCCCEeeeccc------cccccccccccceeeeeeccccC------CCccceeeeeeeeeeeec
Confidence 2 2222 12222 36788887432 24588899987765554322111 1112333 3578999988
Q ss_pred CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCC
Q 016421 296 LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 296 ~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
..+.+.+|++.......+..-.... . .+++.. +|.|||.-... ..|..++..
T Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~~~~-----P-~~i~~d~~g~l~vad~~~------~rI~~i~~~ 253 (260)
T d1rwia_ 201 NTNQVVKLLAGSTTSTVLPFTGLNT-----P-LAVAVDSDRTVYVADRGN------DRVVKLTSL 253 (260)
T ss_dssp TTTEEEEECTTCSCCEECCCCSCCC-----E-EEEEECTTCCEEEEEGGG------TEEEEECCC
T ss_pred CCCEEEEEeCCCCeEEEEccCCCCC-----e-EEEEEeCCCCEEEEECCC------CEEEEEeCC
Confidence 8889999999887766654322110 0 233333 57899884422 246666553
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.17 E-value=4.3 Score=32.18 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=36.0
Q ss_pred EECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 285 VVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 285 ~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
...+.+++.|+..+.+..||..+++.... +.... ..-.+++. -++++++.|+.++ .|.+||..+
T Consensus 214 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~--~~~~~----~~v~~~~~~~~~~~l~s~~~dg------~i~iwd~~~ 278 (317)
T d1vyhc1 214 GKPGPFLLSGSRDKTIKMWDVSTGMCLMT--LVGHD----NWVRGVLFHSGGKFILSCADDK------TLRVWDYKN 278 (317)
T ss_dssp ---CCEEEEEETTSEEEEEETTTTEEEEE--EECCS----SCEEEEEECSSSSCEEEEETTT------EEEEECCTT
T ss_pred ccCCceeEeccCCCEEEEEECCCCcEEEE--EeCCC----CCEEEEEECCCCCEEEEEECCC------eEEEEECCC
Confidence 34456666777778899999888764331 11111 11122222 2566777777553 588899876
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=88.65 E-value=4.1 Score=32.97 Aligned_cols=57 Identities=12% Similarity=0.008 Sum_probs=32.8
Q ss_pred ceEEEEECCCCcEEEcCCCCC-CCcCceEEEE-CC-EEEEEecccCCCccCceEEEEeCCCCceEE
Q 016421 203 KSAELYDSTTGRWEMLPSMHS-PRRLCSGFFM-DG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRK 265 (390)
Q Consensus 203 ~~~~~yd~~t~~W~~~~~~~~-~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 265 (390)
+.+.++|..+++-...-+.+. .......+.. +| .+|+.|+.+ ..+..||..+++...
T Consensus 11 ~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~------~~v~v~D~~t~~~~~ 70 (337)
T d1pbyb_ 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS------ESLVKIDLVTGETLG 70 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT------TEEEEEETTTCCEEE
T ss_pred CEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCC------CeEEEEECCCCcEEE
Confidence 568999999886433212222 1222233332 55 567765432 358889999987654
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=88.57 E-value=4.7 Score=36.64 Aligned_cols=127 Identities=15% Similarity=0.214 Sum_probs=72.3
Q ss_pred EEEECCEEEEEecccCCCccCceEEEEeCC-CC--ceEEccCCCCCCCCc---CCCCCEEEEECCEEEEEecCCCeEEEE
Q 016421 230 GFFMDGKFYVIGGMSSPTVSLTCGEEFDLE-TR--KWRKIEGMYPNVNRA---AQAPPLVAVVDNQLYAVEYLTNMVKKY 303 (390)
Q Consensus 230 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~-~~--~W~~~~~~~~~~~~~---~~~~~~~~~~~g~l~v~gg~~~~v~~y 303 (390)
-++.+|.||+..+.. ..++..|.. |. .|+.-+..+...... ......++..+++||+.. ..+.+++.
T Consensus 58 P~v~~g~vyv~t~~~------~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~-~~g~l~al 130 (571)
T d2ad6a1 58 PLVIGDMMYVHSAFP------NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQ-ANGHLLAL 130 (571)
T ss_dssp CEEETTEEEEECSTT------TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC-TTSEEEEE
T ss_pred CEEECCEEEEecCCC------CeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEe-CCCcEEee
Confidence 356899999985421 347778863 43 587533222211000 001123577899988754 44789999
Q ss_pred eCCCCc--eEE-ccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEe
Q 016421 304 DKLKNT--WDV-LGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVL 372 (390)
Q Consensus 304 d~~~~~--W~~-v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~ 372 (390)
|.++.+ |.. +......... ..+-++++++||+-+.... ......|.+||..+ +...|+.-
T Consensus 131 da~tG~~~w~~~~~~~~~~~~~----t~~p~v~~~~vivg~~~~~-~~~~G~v~a~D~~T----G~~~W~~~ 193 (571)
T d2ad6a1 131 DAKTGKINWEVEVCDPKVGSTL----TQAPFVAKDTVLMGCSGAE-LGVRGAVNAFDLKT----GELKWRAF 193 (571)
T ss_dssp ETTTCCEEEEEECCCGGGTCBC----CSCCEEETTEEEEECBCGG-GTCCCEEEEEETTT----CCEEEEEE
T ss_pred ehhhhhhhccccccccccccce----eecCeEeCCeEEEeecccc-ccccCcEEEEECCC----CcEEEEEe
Confidence 999985 765 3321111111 1233467888887554221 12234689999999 56679743
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=87.82 E-value=6 Score=32.19 Aligned_cols=197 Identities=9% Similarity=-0.099 Sum_probs=99.5
Q ss_pred EeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeee-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016421 140 AVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 140 ~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
..++.||+... ....++++||... ...+...+. ...+++ .-++.+|+.+..... ......+....+-..+
T Consensus 36 ~pdG~l~vt~~--~~~~I~~i~p~g~-~~~~~~~~~--~~~gla~~~dG~l~v~~~~~~~----~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 36 APDGTIFVTNH--EVGEIVSITPDGN-QQIHATVEG--KVSGLAFTSNGDLVATGWNADS----IPVVSLVKSDGTVETL 106 (302)
T ss_dssp CTTSCEEEEET--TTTEEEEECTTCC-EEEEEECSS--EEEEEEECTTSCEEEEEECTTS----CEEEEEECTTSCEEEE
T ss_pred CCCCCEEEEeC--CCCEEEEEeCCCC-EEEEEcCCC--CcceEEEcCCCCeEEEecCCce----EEEEEecccccceeec
Confidence 34678887654 3468999998865 333333332 112232 226788888643221 1223334444444444
Q ss_pred CCCCCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCceEEc---cCCCCCCCCc-CCCCCEEEEECCEEEEE
Q 016421 219 PSMHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKI---EGMYPNVNRA-AQAPPLVAVVDNQLYAV 293 (390)
Q Consensus 219 ~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~---~~~~~~~~~~-~~~~~~~~~~~g~l~v~ 293 (390)
...+........+. -++++|+.-. ....++.+|+.+..=... .......... ......+...++.+|+.
T Consensus 107 ~~~~~~~~~n~i~~~~~g~~~v~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~ 180 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLSDTQYLTADS------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVS 180 (302)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEET------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEE
T ss_pred cccCCccccceeEEccCCCEEeecc------ccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeee
Confidence 44444333333333 3778887632 134577888887642221 1111110000 11112345678899999
Q ss_pred ecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 294 EYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 294 gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
....+.+++||.....-............. -+. ++.-+|.||+.....+ .|.+|+++.
T Consensus 181 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p--dgi-a~d~dG~l~va~~~~~------~V~~i~p~G 238 (302)
T d2p4oa1 181 NTEKMLLLRIPVDSTDKPGEPEIFVEQTNI--DDF-AFDVEGNLYGATHIYN------SVVRIAPDR 238 (302)
T ss_dssp ETTTTEEEEEEBCTTSCBCCCEEEEESCCC--SSE-EEBTTCCEEEECBTTC------CEEEECTTC
T ss_pred cCCCCeEEeccccccccccccccccCCCCC--cce-EECCCCCEEEEEcCCC------cEEEECCCC
Confidence 888899999987665321111100000000 012 2234778998875432 377788865
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=87.72 E-value=9.5 Score=34.37 Aligned_cols=119 Identities=17% Similarity=0.208 Sum_probs=70.2
Q ss_pred ccccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCc----ccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--
Q 016421 95 IVEHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDE----CFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS-- 166 (390)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~----~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~-- 166 (390)
..+..+|+......++++|..+. .|..-+..+... ............++.||+... ...++.+|..+++
T Consensus 64 v~~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~g~l~Alda~tG~~~ 140 (560)
T d1kv9a2 64 FHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---DGRLIALDAKTGKAI 140 (560)
T ss_dssp EETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT---TSEEEEEETTTCCEE
T ss_pred EECCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC---CCEEEEEECCCCcEE
Confidence 45788998877788899999966 487543333211 111112234455777777543 3478889988875
Q ss_pred EeecCCCC-CCC-cceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEE
Q 016421 167 WMKCEGMN-HPR-CLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEM 217 (390)
Q Consensus 167 W~~~~~~~-~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~ 217 (390)
|.....-+ ... ......++++.+|+-+. .........+..||.+|++ |+.
T Consensus 141 w~~~~~~~~~~~~~~~~p~v~~~~vivg~~-~~~~~~~G~v~a~D~~TG~~~W~~ 194 (560)
T d1kv9a2 141 WSQQTTDPAKPYSITGAPRVVKGKVIIGNG-GAEYGVRGFVSAYDADTGKLAWRF 194 (560)
T ss_dssp EEEECSCTTSSCBCCSCCEEETTEEEECCB-CTTTCCBCEEEEEETTTCCEEEEE
T ss_pred eccCccCcccceeeeeeeeeecCccccccc-ceeccccceEEEEECCCceEEeee
Confidence 65532211 111 22234456777776433 2222234579999999996 765
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=86.27 E-value=9.6 Score=34.42 Aligned_cols=114 Identities=11% Similarity=0.149 Sum_probs=69.0
Q ss_pred eeeeCCEEEEEeccCCCCCccceEEEEECC-CCc--EEEcCCCCCCC--------cCceEEEECCEEEEEecccCCCccC
Q 016421 182 SGSLGSIAIIAGGSDKNGHVLKSAELYDST-TGR--WEMLPSMHSPR--------RLCSGFFMDGKFYVIGGMSSPTVSL 250 (390)
Q Consensus 182 ~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~-t~~--W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~ 250 (390)
-++.++.||+..+.. ..++.+|.. |++ |+.-+..+... .....+..+++||+... .
T Consensus 58 P~v~~g~vyv~t~~~------~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~-------~ 124 (571)
T d2ad6a1 58 PLVIGDMMYVHSAFP------NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------N 124 (571)
T ss_dssp CEEETTEEEEECSTT------TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------T
T ss_pred CEEECCEEEEecCCC------CeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeC-------C
Confidence 346799999985422 347778864 554 87643322111 11234677999998521 2
Q ss_pred ceEEEEeCCCCc--eEE-ccCCCCCCCCcCCCCCEEEEECCEEEEEec-----CCCeEEEEeCCCCc--eEE
Q 016421 251 TCGEEFDLETRK--WRK-IEGMYPNVNRAAQAPPLVAVVDNQLYAVEY-----LTNMVKKYDKLKNT--WDV 312 (390)
Q Consensus 251 ~~v~~yd~~~~~--W~~-~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg-----~~~~v~~yd~~~~~--W~~ 312 (390)
..+++.|.+|.+ |.. +...... ......-++.++.+|+-.. ..+.|..||..+.+ |+.
T Consensus 125 g~l~alda~tG~~~w~~~~~~~~~~----~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~ 192 (571)
T d2ad6a1 125 GHLLALDAKTGKINWEVEVCDPKVG----STLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp SEEEEEETTTCCEEEEEECCCGGGT----CBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CcEEeeehhhhhhhccccccccccc----cceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEE
Confidence 357889999885 754 3221111 1111234678899988653 35689999999884 875
|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase B (MMP-9) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.25 E-value=5.7 Score=30.33 Aligned_cols=143 Identities=15% Similarity=0.195 Sum_probs=75.2
Q ss_pred EEEeCCEEEEEcccccCCeEEEEECCCCcEe----ec----CCCCCCCcceeeee---eCCEEEEEeccCCCCCccceEE
Q 016421 138 SLAVGSELLVFGRELFDFAIWKYSLVFRSWM----KC----EGMNHPRCLFGSGS---LGSIAIIAGGSDKNGHVLKSAE 206 (390)
Q Consensus 138 ~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~----~~----~~~~~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~ 206 (390)
+...++.+|+|-|. .+|+++....... .+ +.+|.. ..++. .++++|++-|. .++
T Consensus 12 v~~~~G~~y~Fkg~----~ywr~~~~~~~~~~~P~~I~~~w~glp~~---IDAAf~~~~~~k~yfFkg~--------~~~ 76 (195)
T d1itva_ 12 IAEIGNQLYLFKDG----KYWRFSEGRGSRPQGPFLIADKWPALPRK---LDSVFEEPLSKKLFFFSGR--------QVW 76 (195)
T ss_dssp EEEETTEEEEEETT----EEEEECCSSSCCCEEEEEHHHHCTTSCSS---CSEEEECTTTCCEEEEETT--------EEE
T ss_pred EEEeCCEEEEEECC----EEEEEeCCCCCcCCCcEEeeeecCCCCCC---ccEEEEECCCCEEEEEecC--------EEE
Confidence 55678999999763 5667764433221 11 223322 22332 26789999653 467
Q ss_pred EEECCCCcE-EEcCC--CCCCCcCceEEE--ECCEEEEEecccCCCccCceEEEEeCCCCceE-----EccCCCCCCCCc
Q 016421 207 LYDSTTGRW-EMLPS--MHSPRRLCSGFF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR-----KIEGMYPNVNRA 276 (390)
Q Consensus 207 ~yd~~t~~W-~~~~~--~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-----~~~~~~~~~~~~ 276 (390)
+|+-..-.. +.+.. +|..-....++. -+|++|++-|. .+++||..+++=. .+...-...
T Consensus 77 ~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG~--------~y~ryd~~~~~v~~gyPk~i~~~w~gv--- 145 (195)
T d1itva_ 77 VYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR--------RLWRFDVKAQMVDPRSASEVDRMFPGV--- 145 (195)
T ss_dssp EEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT--------EEEEEETTTTEECGGGCEEHHHHSTTS---
T ss_pred EEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEecc--------EEEEEeCCcccccCCCccchhhhcCCC---
Confidence 776432111 12322 222212222332 36899999543 4788998876422 121100000
Q ss_pred CCCCCEEEEECCEEEEEecCCCeEEEEeCCCC
Q 016421 277 AQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 277 ~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~ 308 (390)
+....++...++.+|.+-| ...++||..+.
T Consensus 146 p~~idaAf~~~~~~Yffkg--~~y~r~~~~~~ 175 (195)
T d1itva_ 146 PLDTHDVFQFREKAYFCQD--RFYWRVSSRSE 175 (195)
T ss_dssp CSSCSEEEEETTEEEEEET--TEEEEEECCTT
T ss_pred CCCCcEEEEeCCcEEEEEC--CEEEEEcCCce
Confidence 1122346667899999955 57888986554
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=85.18 E-value=7.2 Score=35.55 Aligned_cols=129 Identities=16% Similarity=0.245 Sum_probs=65.3
Q ss_pred eEEEECCEEEEEecccCCCccCceEEEEeC-CCC--ceEEccCCCCCCCCcCC---CCCEEEEECCE-----EEEEecCC
Q 016421 229 SGFFMDGKFYVIGGMSSPTVSLTCGEEFDL-ETR--KWRKIEGMYPNVNRAAQ---APPLVAVVDNQ-----LYAVEYLT 297 (390)
Q Consensus 229 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~-~~~--~W~~~~~~~~~~~~~~~---~~~~~~~~~g~-----l~v~gg~~ 297 (390)
+=++++|.||+.+... ..++.+|. +|. .|+--+........... ..-.++...+. .++++...
T Consensus 57 tPiv~~g~ly~~t~~~------~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~d 130 (596)
T d1w6sa_ 57 APLVVDGKMYIHTSFP------NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLD 130 (596)
T ss_dssp CCEEETTEEEEECSTT------TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTT
T ss_pred CCEEECCEEEEeeCCC------CcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCC
Confidence 3457899999975432 23566664 333 46643222211000000 01123444332 33344445
Q ss_pred CeEEEEeCCCCc--eEEc-cCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEe
Q 016421 298 NMVKKYDKLKNT--WDVL-GRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVL 372 (390)
Q Consensus 298 ~~v~~yd~~~~~--W~~v-~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~ 372 (390)
..++.+|.++.+ |+.- ........ ...+-++++++|||-.+.. .......|..||..+ +...|+.-
T Consensus 131 g~l~Alda~tG~~~w~~~~~d~~~~~~----~t~~P~v~~~~vivg~~~~-e~~~~G~v~A~Da~T----G~~~W~~~ 199 (596)
T d1w6sa_ 131 GNVAALNAETGETVWKVENSDIKVGST----LTIAPYVVKDKVIIGSSGA-ELGVRGYLTAYDVKT----GEQVWRAY 199 (596)
T ss_dssp SEEEEEETTTCCEEEEEECCCGGGTCB----CCSCCEEETTEEEECCBCG-GGTCCCEEEEEETTT----CCEEEEEE
T ss_pred CCeEeeccccCceeccccccccccccc----cccCCcEECCeEEEeeccc-cccccCceEEEECCC----CcEEEEee
Confidence 688888988874 7752 22211111 1123446788887743221 112234688999999 66779743
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.96 E-value=10 Score=34.35 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=70.5
Q ss_pred EEEECCEEEEEecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCCc-CCCCCEEEEECCEEEEEecCCCeEEEEeCC
Q 016421 230 GFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRA-AQAPPLVAVVDNQLYAVEYLTNMVKKYDKL 306 (390)
Q Consensus 230 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~-~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~ 306 (390)
-++.+|.||+... ...++.+|..|++ |+.-...+...... ......++..++++|+.. ....++.+|.+
T Consensus 64 Piv~~g~vy~~t~-------~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t-~~~~l~alda~ 135 (582)
T d1flga_ 64 AIVSDGVIYVTAS-------YSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT-LDASVVALNKN 135 (582)
T ss_dssp CEEETTEEEEEET-------TTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE-TTTEEEEEESS
T ss_pred CEEECCEEEEeCC-------CCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEec-CCCeEEEeccc
Confidence 4678999999753 2458889998874 87533322211000 111123667888887753 45679999999
Q ss_pred CC--ceEEc-cCCCccccCCCcceeEEEEeC---CEEEEEcCCCC-CCCCeEEEeeecCCCCCCCCCCceEE
Q 016421 307 KN--TWDVL-GRLPVRADLSNGWGLAFKACG---NELLVVGGQRG-PEGENVVLNSWCPKSGVNNGTLDWKV 371 (390)
Q Consensus 307 ~~--~W~~v-~~~~~~~~~~~~~~~~~~~~~---~~lyv~GG~~~-~~~~~~~i~~y~~~~~~~~~~~~W~~ 371 (390)
++ .|+.- ......... .+...+..+ ..++++.|... .......|..+|..+ +...|+.
T Consensus 136 tG~~~W~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~t----G~~~W~~ 200 (582)
T d1flga_ 136 TGKVVWKKKFADHGAGYTM---TGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT----GEEIWMR 200 (582)
T ss_dssp SCCEEEEEECSCGGGTCBC---CSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT----CCEEEEE
T ss_pred ccceeeeecccCCCcccee---ecCceEecCCcEeEEEEEeCccccccccccceEEecCCC----CcEEEEE
Confidence 88 58653 222111110 112222222 34444444332 222334688999998 5667874
|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase B (MMP-9) species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.49 E-value=7 Score=29.80 Aligned_cols=143 Identities=9% Similarity=0.106 Sum_probs=73.7
Q ss_pred eeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEE----Ec----CCCCCCCcCceEEE---ECCEEEEEecccCCCcc
Q 016421 181 GSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE----ML----PSMHSPRRLCSGFF---MDGKFYVIGGMSSPTVS 249 (390)
Q Consensus 181 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~----~~----~~~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~ 249 (390)
+++.++|.+|+|-|. ..|+|+....... .+ +.+|.. --+|. .++++|++-|.
T Consensus 11 Av~~~~G~~y~Fkg~--------~ywr~~~~~~~~~~~P~~I~~~w~glp~~---IDAAf~~~~~~k~yfFkg~------ 73 (195)
T d1itva_ 11 AIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPRK---LDSVFEEPLSKKLFFFSGR------ 73 (195)
T ss_dssp EEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCSS---CSEEEECTTTCCEEEEETT------
T ss_pred eEEEeCCEEEEEECC--------EEEEEeCCCCCcCCCcEEeeeecCCCCCC---ccEEEEECCCCEEEEEecC------
Confidence 456679999999652 3566654333221 11 334432 22332 26789998543
Q ss_pred CceEEEEeCCCCce-EEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceE-----Ecc----CCCcc
Q 016421 250 LTCGEEFDLETRKW-RKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWD-----VLG----RLPVR 319 (390)
Q Consensus 250 ~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~-----~v~----~~~~~ 319 (390)
.+++|+-.+-.. ..+.....+... ..-.++....+|++|++-| ...++||..+++=. .|. .+|..
T Consensus 74 --~~~~y~~~~~~~Pk~i~~~g~p~~~-~~idaa~~~~~g~~Y~FkG--~~y~ryd~~~~~v~~gyPk~i~~~w~gvp~~ 148 (195)
T d1itva_ 74 --QVWVYTGASVLGPRRLDKLGLGADV-AQVTGALRSGRGKMLLFSG--RRLWRFDVKAQMVDPRSASEVDRMFPGVPLD 148 (195)
T ss_dssp --EEEEEETTEEEEEEEGGGGTCCTTC-CCCCEEEECSTTEEEEEET--TEEEEEETTTTEECGGGCEEHHHHSTTSCSS
T ss_pred --EEEEEcCccccCCEEhhhcCCCCCc-hheeeEEEcCCCeEEEEec--cEEEEEeCCcccccCCCccchhhhcCCCCCC
Confidence 356676332111 122221111000 1111112223679999955 47999998876421 121 23322
Q ss_pred ccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 320 ADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 320 ~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
. .++...++++|++-|.. .+.|+..+
T Consensus 149 i-------daAf~~~~~~Yffkg~~--------y~r~~~~~ 174 (195)
T d1itva_ 149 T-------HDVFQFREKAYFCQDRF--------YWRVSSRS 174 (195)
T ss_dssp C-------SEEEEETTEEEEEETTE--------EEEEECCT
T ss_pred C-------cEEEEeCCcEEEEECCE--------EEEEcCCc
Confidence 2 24456789999998843 66777655
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=82.90 E-value=10 Score=30.60 Aligned_cols=195 Identities=10% Similarity=0.011 Sum_probs=97.8
Q ss_pred ccEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCC
Q 016421 97 EHWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH 175 (390)
Q Consensus 97 ~~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~ 175 (390)
+..||+.. ....++.+||... ...+...+..+. ...+..++.+|+.+........+..+....+-..+...+.
T Consensus 38 dG~l~vt~~~~~~I~~i~p~g~-~~~~~~~~~~~~-----gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (302)
T d2p4oa1 38 DGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVS-----GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPD 111 (302)
T ss_dssp TSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEE-----EEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred CCCEEEEeCCCCEEEEEeCCCC-EEEEEcCCCCcc-----eEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCC
Confidence 34566654 3567888998755 334333332211 1122336678887533222233334444444444444443
Q ss_pred CCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCc---EEEcCC-----CCCCCcCc-eEEEECCEEEEEecccC
Q 016421 176 PRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGR---WEMLPS-----MHSPRRLC-SGFFMDGKFYVIGGMSS 245 (390)
Q Consensus 176 ~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~-----~~~~r~~~-~~~~~~~~iyv~GG~~~ 245 (390)
.....+.+. -++.+|+.-.. ...++.+|+.++. |..-+. ........ .....++.+|+....
T Consensus 112 ~~~~n~i~~~~~g~~~v~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~-- 183 (302)
T d2p4oa1 112 AIFLNGITPLSDTQYLTADSY------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE-- 183 (302)
T ss_dssp CSCEEEEEESSSSEEEEEETT------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT--
T ss_pred ccccceeEEccCCCEEeeccc------cccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCC--
Confidence 333334433 36788776321 3457888888775 222111 11111122 223457788886432
Q ss_pred CCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEE
Q 016421 246 PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDV 312 (390)
Q Consensus 246 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~ 312 (390)
...+++||.....-.......... ... ...++..+|.||+.....+.|.+|++..+.-..
T Consensus 184 ----~~~i~~~~~~~~~~~~~~~~~~~~-~~p--dgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~ 243 (302)
T d2p4oa1 184 ----KMLLLRIPVDSTDKPGEPEIFVEQ-TNI--DDFAFDVEGNLYGATHIYNSVVRIAPDRSTTII 243 (302)
T ss_dssp ----TTEEEEEEBCTTSCBCCCEEEEES-CCC--SSEEEBTTCCEEEECBTTCCEEEECTTCCEEEE
T ss_pred ----CCeEEeccccccccccccccccCC-CCC--cceEECCCCCEEEEEcCCCcEEEECCCCCEEEE
Confidence 346778887654321111000000 000 112333578899998777889999998765433
|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase (MMP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.86 E-value=8.2 Score=29.36 Aligned_cols=141 Identities=11% Similarity=0.063 Sum_probs=73.6
Q ss_pred eeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEE--Ec----CCCCCCCcCceEEEE--CCEEEEEecccCCCccCce
Q 016421 181 GSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE--ML----PSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTC 252 (390)
Q Consensus 181 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~--~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 252 (390)
+++..++.+|+|-|.. +|..+....... .+ +.+|..- -++... ++++|++-|. .
T Consensus 16 Av~~~~G~~y~Fkg~~--------~wr~~~~~~~~~p~~i~~~w~glp~~I--DAAf~~~~~~~~yfFkG~--------~ 77 (195)
T d1su3a2 16 AITTIRGEVMFFKDRF--------YMRTNPFYPEVELNFISVFWPQLPNGL--EAAYEFADRDEVRFFKGN--------K 77 (195)
T ss_dssp EEEEETTEEEEEETTE--------EEECCTTSSSCEEEEGGGTCTTSCSSC--CEEEEEGGGTEEEEEETT--------E
T ss_pred EEEEcCCeEEEEeCCE--------EEEeeCCCCccCccchHhhCcCCCCcc--cceEEecCCcEEEEECCc--------E
Confidence 5667799999997631 344333332221 11 2333322 122223 5899999653 4
Q ss_pred EEEEeCCCCce---EEcc---CCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceE-----Ecc----C
Q 016421 253 GEEFDLETRKW---RKIE---GMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWD-----VLG----R 315 (390)
Q Consensus 253 v~~yd~~~~~W---~~~~---~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~-----~v~----~ 315 (390)
+++|+-.+... ..+. .+|.. ...--++... ++++|++-| +..++||..+++=. .|. .
T Consensus 78 y~~y~~~~~~~g~p~~i~~~~G~p~~----~~~idaa~~~~~~~~~Y~FkG--~~y~ry~~~~~~vd~gyPk~I~~~w~G 151 (195)
T d1su3a2 78 YWAVQGQNVLHGYPKDIYSSFGFPRT----VKHIDAALSEENTGKTYFFVA--NKYWRYDEYKRSMDPGYPKMIAHDFPG 151 (195)
T ss_dssp EEEEETTEECTTCSEEHHHHHCCCTT----CCCCCEEEEETTTTEEEEEET--TEEEEEETTTTEECSSCSEEHHHHSTT
T ss_pred EEEEcCCccccCCCccchhhcCCCCC----ccccccccccCCCCeEEEEeC--CEEEEEeccCccccCCcccccccccCC
Confidence 67776432211 1111 11111 1111123332 579999976 57899998776421 121 2
Q ss_pred CCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 316 LPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+|... -|+...+|++|++-|.. .+.||+.+
T Consensus 152 vp~~i-------DAAf~~~g~~YfFkg~~--------y~r~~~~~ 181 (195)
T d1su3a2 152 IGHKV-------DAVFMKDGFFYFFHGTR--------QYKFDPKT 181 (195)
T ss_dssp SCSCC-------SEEEEETTEEEEEETTE--------EEEEETTT
T ss_pred CCCCc-------cEEEEECCeEEEEECCE--------EEEEeCCc
Confidence 22222 23446799999999843 67788765
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.94 E-value=12 Score=30.47 Aligned_cols=65 Identities=8% Similarity=0.069 Sum_probs=39.4
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEE-ccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 287 DNQLYAVEYLTNMVKKYDKLKNTWDV-LGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 287 ~g~l~v~gg~~~~v~~yd~~~~~W~~-v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.+++.++.-+.|.+||..+++-.. +..-..... ....+....+++.++.|+.++ .|.+||.++
T Consensus 217 ~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~---~~~~s~~~~dg~~l~s~s~D~------~i~iwd~~~ 282 (325)
T d1pgua1 217 SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ---GGIFALSWLDSQKFATVGADA------TIRVWDVTT 282 (325)
T ss_dssp TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCC---SCEEEEEESSSSEEEEEETTS------EEEEEETTT
T ss_pred cceeccccccccceeeeeeccccccccccccccccc---cceeeeeccCCCEEEEEeCCC------eEEEEECCC
Confidence 35777778778889999998876433 221111111 111222234677777777663 588899887
|
| >d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=81.94 E-value=8.8 Score=29.09 Aligned_cols=93 Identities=16% Similarity=0.262 Sum_probs=53.2
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcE---eec----CCCCCCCcceeeee------eCCEEEEEeccCCCCCccceEEEE
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSW---MKC----EGMNHPRCLFGSGS------LGSIAIIAGGSDKNGHVLKSAELY 208 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W---~~~----~~~~~~r~~~~~~~------~~~~lyv~GG~~~~~~~~~~~~~y 208 (390)
++.+|+|.|. .+++|+..+... +.+ +.+|... -++.. .++++|++-|. ..+.|
T Consensus 59 ~~~~yfFkG~----~yw~y~~~~~~~gyPk~i~~~~~glp~~i--DAA~~~~~~~~~~~~~yfFkg~--------~yw~y 124 (192)
T d1qhua1 59 HTSVYLIKGD----KVWVYTSEKNEKVYPKSLQDEFPGIPFPL--DAAVECHRGECQDEGILFFQGN--------RKWFW 124 (192)
T ss_dssp TTEEEEEETT----EEEEECC-------CEEHHHHSTTCCSSC--CEEEEECBBTBSSSEEEEEETT--------EEEEE
T ss_pred CCcEEEEeCC----EEEEEeCCccccCCCcChHHhCCCCCCCc--eEEEEccccccCCCeEEEEeCC--------eEEEE
Confidence 5789999873 678886543322 111 1222111 12221 27899999662 46889
Q ss_pred ECCCCc-----EEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc
Q 016421 209 DSTTGR-----WEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 209 d~~t~~-----W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
|..++. |..+ |. ..+++..+|++|++-|. ..++||..+.+
T Consensus 125 d~~~~~~~~~~w~gi---p~---~daA~~~~g~~YfFkg~--------~y~r~~~~~~~ 169 (192)
T d1qhua1 125 DLTTGTKKERSWPAV---GN---CTSALRWLGRYYCFQGN--------QFLRFNPVSGE 169 (192)
T ss_dssp ETTTTEEEEECCTTS---CC---CSEEEEETTEEEEEETT--------EEEEECTTTCC
T ss_pred eCCCCCcccccccCc---CC---cceeEEeCCcEEEEECC--------EEEEEcCCcce
Confidence 988774 4322 21 23455679999999553 46778887754
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.07 E-value=11 Score=29.66 Aligned_cols=185 Identities=12% Similarity=-0.035 Sum_probs=90.7
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++.+|+..... ...+..+++....-..... ...-...++++ -++.||+.... ...+.+++..+..+...
T Consensus 24 dG~i~v~~~~~-~~~i~~~~~~~~~~~~~~~-~~~~~p~gvav~~~g~i~v~d~~------~~~i~~~~~~~~~~~~~-- 93 (260)
T d1rwia_ 24 AGNVYVTSEGM-YGRVVKLATGSTGTTVLPF-NGLYQPQGLAVDGAGTVYVTDFN------NRVVTLAAGSNNQTVLP-- 93 (260)
T ss_dssp TCCEEEEECSS-SCEEEEEC----CEEECCC-CSCCSCCCEEECTTCCEEEEETT------TEEEEECTTCSCCEECC--
T ss_pred CCCEEEEEcCC-CCEEEEEcCCCceEEEecc-CCccCceEEEEcCCCCEEEeeee------eceeeeeeeccceeeee--
Confidence 57888875422 2356666666554322221 11111122332 36789887532 12344454444444321
Q ss_pred CCCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCC
Q 016421 221 MHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTN 298 (390)
Q Consensus 221 ~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~ 298 (390)
...-......++ .+|+||+.-.. ...+..++.....-......... ....+++ .+|++|+......
T Consensus 94 ~~~~~~p~~iavd~~g~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~------~p~~i~~~~~g~~~v~~~~~~ 161 (260)
T d1rwia_ 94 FDGLNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFTGLN------DPDGVAVDNSGNVYVTDTDNN 161 (260)
T ss_dssp CCSCCSEEEEEECTTCCEEEEEGG------GTEEEEECTTCSSCEECCCCSCC------SCCEEEECTTCCEEEEEGGGT
T ss_pred eeeeeecccccccccceeEeeccc------cccccccccccceeeeeeecccC------CcceeeecCCCCEeeeccccc
Confidence 111111223332 36789886322 23466777766543333221110 1112333 4678999987778
Q ss_pred eEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 299 MVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 299 ~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.+||++.+....+...... . -.+++. -+|.||+..-.. ..|+.|+++.
T Consensus 162 ~i~~~d~~~~~~~~~~~~~~~-~-----p~gi~~d~~g~l~vsd~~~------~~i~~~~~~~ 212 (260)
T d1rwia_ 162 RVVKLEAESNNQVVLPFTDIT-A-----PWGIAVDEAGTVYVTEHNT------NQVVKLLAGS 212 (260)
T ss_dssp EEEEECTTTCCEEECCCSSCC-S-----EEEEEECTTCCEEEEETTT------TEEEEECTTC
T ss_pred cccccccccceeeeeeccccC-C-----CccceeeeeeeeeeeecCC------CEEEEEeCCC
Confidence 999999988765554321111 1 023333 367898877432 2477888876
|