Citrus Sinensis ID: 016458

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MSSSVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPWGVKGL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcccccccEEEcccccEEccEEccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEccccccccccccccEEcccccccEEEEEEEEccccEEEEccccccEEEEEcccccEEEEEcccccccccccEEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEEccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccccccEEEEEEcccccEEEEccccccEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEEccccccccccccEEEEEccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEEcccccccccccEEEEEEccccccEEEEEccccEEEEEEccccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEccccccccccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEcccccccccccEEEEEEcccccEEEEcccccEEEEEEccEccccccEEccccccc
Coil and Loop (DISEMBL)
MSSSVSELKERHAAAIETVNSLRERLKQKRQQLLDVdvagysrsqgrapvsfgptdlvccrtlqghagkvysldwtsernrivsasqDGRLIVWNALTSQkthaiklpcawvmtcafsptgqsvacggldsvcsifnlnsptdkdgnlpvsrmlsghkgyvsccqyvpdedthlitssgdqtcvLWDIttglrtsvfggefqsghtaDVLSVSisgsnsrmfvsgscdstarLWDTRVASRAVRtfhghegdvntvkffpdgnrfgtgsddgtcrlfdirtgHQLQVYYQQhgeneiphvtSIAFSISGRLLfagysngdcyVWDTLLAKVVLNLGslqnshegritclglsadgsalctgswdtnlkVNLGFWrvqegalspwgvkgl
Flexible Loop (DISEMBL)
msssvselkerhAAAIETVNSLRERLKQKRQQLLDVDVAGYSrsqgrapvsfgptDLVCCRTLQGHAgkvysldwtseRNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVrtfhghegdvntvkffpdgNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWrvqegalspwgvkgl
Low Complexity Region (SEG)
MSSSVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPWGVKGL
Disordered region (IsUnstruct)
*********************************LDVDVAGY******APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP*****NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPWG****
Disordered Region (DISOPRED)
********************SLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP***KG*
Disordered Region (DISEMBL)
************AAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPWGVKGL
Disordered Region (DISPRO)
****VSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPW*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPWGVKGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	389	2.2.26 [Sep-21-2011]
P93398	377	Guanine nucleotide-bindin	N/A	no	0.894	0.923	0.896	0.0
P93397	377	Guanine nucleotide-bindin	N/A	no	0.889	0.917	0.890	0.0
Q40507	375	Guanine nucleotide-bindin	N/A	no	0.889	0.922	0.885	0.0
P93563	377	Guanine nucleotide-bindin	N/A	no	0.894	0.923	0.882	0.0
P93339	377	Guanine nucleotide-bindin	N/A	no	0.894	0.923	0.874	0.0
P49178	380	Guanine nucleotide-bindin	N/A	no	0.943	0.965	0.804	1e-173
P49177	377	Guanine nucleotide-bindin	yes	no	0.938	0.968	0.836	1e-171
Q40687	380	Guanine nucleotide-bindin	yes	no	0.943	0.965	0.815	1e-170
O14435	359	Guanine nucleotide-bindin	N/A	no	0.884	0.958	0.479	6e-92
Q6PH57	340	Guanine nucleotide-bindin	yes	no	0.861	0.985	0.456	3e-88

>sp|P93398|GBB2_TOBAC Guanine nucleotide-binding protein subunit beta-2 OS=Nicotiana tabacum PE=2 SV=1

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/366 (89%), Positives = 345/366 (94%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV ELKERH AA +TVN LRE+LKQKR QLLD DV+GY+RSQG+ PV FGPTDLVCCR L
Sbjct: 2   SVKELKERHMAATQTVNDLREKLKQKRLQLLDTDVSGYARSQGKTPVIFGPTDLVCCRIL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWT E+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP+GQS
Sbjct: 62  QGHTGKVYSLDWTPEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPSGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSP DKDGN PVSRMLSGHKGYVS CQYVPDEDTH+ITSSGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPIDKDGNHPVSRMLSGHKGYVSSCQYVPDEDTHVITSSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADV SVSIS SN R+FVSGSCDSTARLWDTRVASRA 
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVQSVSISSSNPRLFVSGSCDSTARLWDTRVASRAQ 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTF+GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ HG+ +IPHVTS+
Sbjct: 242 RTFYGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQPHGDGDIPHVTSM 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLLF GYSNGDCYVWDTLLAKVVLNLG++QNSHEGRI+CLGLSADGSALCTGSW
Sbjct: 302 AFSISGRLLFVGYSNGDCYVWDTLLAKVVLNLGAVQNSHEGRISCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
Nicotiana tabacum (taxid: 4097)

>sp|P93397|GBB1_TOBAC Guanine nucleotide-binding protein subunit beta-1 OS=Nicotiana tabacum PE=1 SV=1

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/366 (89%), Positives = 345/366 (94%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH AA +TVN LRE+LKQKR QLLD DV+GY+RSQG+ PV+FGPTDLVCCR L
Sbjct: 2   SVTELKERHMAATQTVNDLREKLKQKRLQLLDTDVSGYARSQGKTPVTFGPTDLVCCRIL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWT E+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP+GQS
Sbjct: 62  QGHTGKVYSLDWTPEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPSGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSP DKDGN PVSRMLSGHKGYVS CQYVPDEDTHLITSSGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPIDKDGNHPVSRMLSGHKGYVSSCQYVPDEDTHLITSSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADV SVSIS SN R+FVSGSCD+TARLWDTRVASRA 
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVQSVSISSSNPRLFVSGSCDTTARLWDTRVASRAQ 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTF+GHEGDVNTVKFFPDGNRFGTGS+DGTCRLFDIRT HQLQVYYQ HG+ +IPHVTS+
Sbjct: 242 RTFYGHEGDVNTVKFFPDGNRFGTGSEDGTCRLFDIRTEHQLQVYYQPHGDGDIPHVTSM 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLLF GYSNGDCYVWDTLLAKVVLNLG +QNSHEGRI+CLGLSADGSALCTGSW
Sbjct: 302 AFSISGRLLFVGYSNGDCYVWDTLLAKVVLNLGGVQNSHEGRISCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Nicotiana tabacum (taxid: 4097)

>sp|Q40507|GBB3_TOBAC Guanine nucleotide-binding protein subunit beta OS=Nicotiana tabacum PE=2 SV=1

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/366 (88%), Positives = 345/366 (94%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH AA +TV+ LRE+LKQKR QLLD DV+GY+RSQG+ PV+FGPTDLVCCR L
Sbjct: 2   SVTELKERHMAATQTVSDLREKLKQKRLQLLDTDVSGYARSQGKTPVTFGPTDLVCCRIL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWT E+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP+GQS
Sbjct: 62  QGHTGKVYSLDWTPEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPSGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSI+NLNSP DKDGN PVSRMLSGHKGYVS CQYVPDEDTHLITSSGDQTC
Sbjct: 122 VACGGLDSVCSIYNLNSPIDKDGNHPVSRMLSGHKGYVSSCQYVPDEDTHLITSSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADV SVSIS SN R+FVSGSCD+TARLWD RVASRA 
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVQSVSISSSNPRLFVSGSCDTTARLWDNRVASRAQ 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTF+GHEGDVNTVKFFPDGNRFGTGS+DGTCRLFDIRTGHQLQVYYQ HG+ +IPHVTS+
Sbjct: 242 RTFYGHEGDVNTVKFFPDGNRFGTGSEDGTCRLFDIRTGHQLQVYYQPHGDGDIPHVTSM 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLLF GYSNGDCYVWDTLLAKVVLNLG +QNSHEGRI+CLGLSADGSALCTGSW
Sbjct: 302 AFSISGRLLFVGYSNGDCYVWDTLLAKVVLNLGGVQNSHEGRISCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Nicotiana tabacum (taxid: 4097)

>sp|P93563|GBB_SOLTU Guanine nucleotide-binding protein subunit beta OS=Solanum tuberosum GN=GB1 PE=2 SV=1

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/366 (88%), Positives = 344/366 (93%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH AA +TVN LRE+LKQKR QLLD DV+GY++ QG++PV+FGPTDLVCCR L
Sbjct: 2   SVAELKERHMAATQTVNDLREKLKQKRLQLLDTDVSGYAKRQGKSPVTFGPTDLVCCRIL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWT E+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP+GQS
Sbjct: 62  QGHTGKVYSLDWTPEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPSGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDS CSIFNLNSP DKDG  PVSRMLSGHKGYVS CQYVPDEDTHLITSSGDQTC
Sbjct: 122 VACGGLDSACSIFNLNSPIDKDGIHPVSRMLSGHKGYVSSCQYVPDEDTHLITSSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADVLSVSIS SN ++FVSGSCD+TARLWDTRVASRA 
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISSSNPKLFVSGSCDTTARLWDTRVASRAQ 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTFHGHE DVNTVKFFPDGNRFGTGSDDG+CRLFDIRTGHQLQVY Q HG+ +IPHVTS+
Sbjct: 242 RTFHGHESDVNTVKFFPDGNRFGTGSDDGSCRLFDIRTGHQLQVYNQPHGDGDIPHVTSM 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLLF GYSNGDCYVWDTLLAKVVLNLGS+QNSHEGRI+CLGLSADGSALCTGSW
Sbjct: 302 AFSISGRLLFVGYSNGDCYVWDTLLAKVVLNLGSVQNSHEGRISCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Solanum tuberosum (taxid: 4113)

>sp|P93339|GBB_NICPL Guanine nucleotide-binding protein subunit beta OS=Nicotiana plumbaginifolia PE=2 SV=1

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/366 (87%), Positives = 340/366 (92%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH AA +TVN LRE+LKQKR QLLD DV+GY+RSQG+ PV+FGPTDLVCCR L
Sbjct: 2   SVTELKERHMAATQTVNDLREKLKQKRLQLLDTDVSGYARSQGKTPVTFGPTDLVCCRIL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWT E+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP+G S
Sbjct: 62  QGHTGKVYSLDWTPEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPSGHS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSP DKDGN PVSRMLSGHKGYVS CQYVPDEDTHLITSSGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPIDKDGNHPVSRMLSGHKGYVSSCQYVPDEDTHLITSSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQ GHTADV SVSIS SN R+FVSGSCD+TARLWDTRVASRA 
Sbjct: 182 VLWDITTGLRTSVFGGEFQFGHTADVQSVSISSSNPRLFVSGSCDTTARLWDTRVASRAQ 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTF+ HEGDVNTVKFFPDGNRFGTGS+DGTCRLFDIRTGHQLQVYYQ HG+ +IPHVTS+
Sbjct: 242 RTFYCHEGDVNTVKFFPDGNRFGTGSEDGTCRLFDIRTGHQLQVYYQPHGDGDIPHVTSM 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLLF  YSNGDCYVWDTLLAKVVLNLG++QNSHEG I+CLGLSADG  LCTGSW
Sbjct: 302 AFSISGRLLFVRYSNGDCYVWDTLLAKVVLNLGAVQNSHEGXISCLGLSADGXXLCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|P49178|GBB_MAIZE Guanine nucleotide-binding protein subunit beta OS=Zea mays GN=GB1 PE=2 SV=1

 Score =  607 bits (1565), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 297/369 (80%), Positives = 334/369 (90%), Gaps = 2/369 (0%)

Query: 3   SSVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT 62
           +SV+ELKE+HAAA  +VNSLRERL+Q+R+ LLD DVA YS+SQGR PVSF PTDLVCCRT
Sbjct: 2   ASVAELKEKHAAATASVNSLRERLRQRRETLLDTDVARYSKSQGRVPVSFNPTDLVCCRT 61

Query: 63  LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122
           LQGH+GKVYSLDWT E+N IVSASQDGRLIVWNALTSQKTHAIKL C WVM CAF+P GQ
Sbjct: 62  LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMACAFAPNGQ 121

Query: 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182
           SVACGGLDS CSIFNLNS  D+DGN+PVSR+L+GHKGYVS CQYVPD++T LITSSGDQT
Sbjct: 122 SVACGGLDSACSIFNLNSQADRDGNMPVSRILTGHKGYVSSCQYVPDQETRLITSSGDQT 181

Query: 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA 242
           CVLWD+TTG R S+FGGEF SGHTADV SVSI+ SN+ MFVSGSCD+T RLWD R+ASRA
Sbjct: 182 CVLWDVTTGQRISIFGGEFPSGHTADVQSVSINSSNTNMFVSGSCDTTVRLWDIRIASRA 241

Query: 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ--HGENEIPHV 300
           VRT+HGHE DVN+VKFFPDG+RFGTGSDDGTCRLFD+RTGHQLQVY ++     NE+P V
Sbjct: 242 VRTYHGHEDDVNSVKFFPDGHRFGTGSDDGTCRLFDMRTGHQLQVYSREPDRNSNELPTV 301

Query: 301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360
           TSIAFSISGRLLFAGYSNGDCYVWDTLLA+VVLNLG+LQNSH+GRI+CLG+S+DGSALCT
Sbjct: 302 TSIAFSISGRLLFAGYSNGDCYVWDTLLAEVVLNLGNLQNSHDGRISCLGMSSDGSALCT 361

Query: 361 GSWDTNLKV 369
           GSWD NLK+
Sbjct: 362 GSWDKNLKI 370

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Zea mays (taxid: 4577)

>sp|P49177|GBB_ARATH Guanine nucleotide-binding protein subunit beta OS=Arabidopsis thaliana GN=GB1 PE=1 SV=1

 Score =  602 bits (1552), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 307/367 (83%), Positives = 332/367 (90%), Gaps = 2/367 (0%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SVSELKERHA A ETVN+LR++L+Q+R QLLD DVA YS +QGR  VSFG TDLVCCRTL
Sbjct: 2   SVSELKERHAVATETVNNLRDQLRQRRLQLLDTDVARYSAAQGRTRVSFGATDLVCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWT ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP GQS
Sbjct: 62  QGHTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIF+L+S  DKDG +PVSRML+GH+GYVSCCQYVP+ED HLITSSGDQTC
Sbjct: 122 VACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           +LWD+TTGL+TSVFGGEFQSGHTADVLSVSISGSN   F+SGSCDSTARLWDTR ASRAV
Sbjct: 182 ILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTARLWDTRAASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTFHGHEGDVNTVKFFPDG RFGTGSDDGTCRL+DIRTGHQLQV YQ HG+ E   VTSI
Sbjct: 242 RTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGHQLQV-YQPHGDGENGPVTSI 300

Query: 304 AFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362
           AFS+SGRLLFAGY SN  CYVWDTLL +VVL+LG  Q+SH  RI+CLGLSADGSALCTGS
Sbjct: 301 AFSVSGRLLFAGYASNNTCYVWDTLLGEVVLDLGLQQDSHRNRISCLGLSADGSALCTGS 360

Query: 363 WDTNLKV 369
           WD+NLK+
Sbjct: 361 WDSNLKI 367

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. Together with GCR1 and GPA1, acts as a negative regulator of ABA during seed germination and early seedling development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40687|GBB_ORYSJ Guanine nucleotide-binding protein subunit beta OS=Oryza sativa subsp. japonica GN=Os03g0669200 PE=1 SV=1

 Score =  599 bits (1544), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 301/369 (81%), Positives = 336/369 (91%), Gaps = 2/369 (0%)

Query: 3   SSVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT 62
           +SV+ELKE+HAAA  +VNSLRERL+Q+RQ LLD DV  YSR+QGR PVSF PTDLVCCRT
Sbjct: 2   ASVAELKEKHAAATASVNSLRERLRQRRQMLLDTDVERYSRTQGRTPVSFNPTDLVCCRT 61

Query: 63  LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122
           LQGH+GKVYSLDWT E+N IVSASQDGRLIVWNALTSQKTHAIKL C WVMTCAF+P GQ
Sbjct: 62  LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMTCAFAPNGQ 121

Query: 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182
           SVACGGLDS CSIFNLNS  D+DGN+PVSR+L+GHKGYVS CQYVPD++T LITSSGDQT
Sbjct: 122 SVACGGLDSACSIFNLNSQADRDGNIPVSRILTGHKGYVSSCQYVPDQETRLITSSGDQT 181

Query: 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA 242
           CVLWD+TTG R S+FGGEF SGHTADVLS+SI+ SNS MFVSGSCD+T RLWD R+ASRA
Sbjct: 182 CVLWDVTTGQRISIFGGEFPSGHTADVLSLSINSSNSNMFVSGSCDATVRLWDIRIASRA 241

Query: 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ--HGENEIPHV 300
           VRT+HGHEGD+N+VKFFPDG RFGTGSDDGTCRLFD+RTGHQLQVY ++    +NE+P V
Sbjct: 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDVRTGHQLQVYSREPDRNDNELPTV 301

Query: 301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360
           TSIAFSISGRLLFAGYSNGDCYVWDTLLA+VVLNLG+LQNSHEGRI+CLGLS+DGSALCT
Sbjct: 302 TSIAFSISGRLLFAGYSNGDCYVWDTLLAEVVLNLGNLQNSHEGRISCLGLSSDGSALCT 361

Query: 361 GSWDTNLKV 369
           GSWD NLK+
Sbjct: 362 GSWDKNLKI 370

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O14435|GBB_CRYPA Guanine nucleotide-binding protein subunit beta OS=Cryphonectria parasitica GN=GB-1 PE=3 SV=1

 Score =  337 bits (865), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 177/369 (47%), Positives = 248/369 (67%), Gaps = 25/369 (6%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDV---DVAGYSRSQGRAPVSFGPTDLVCC 60
           S   ++ R   A      L++R+K+K+ +L D    DVA   RS    P +     +   
Sbjct: 10  SPEAMQARIQQARREAEGLKDRIKRKKDELADTSLRDVA--HRSHEAIPRN---QLMKTK 64

Query: 61  RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
           RTL+GH  K+Y++ W+++R  +VSASQDG+LI+W+A T+ K HAI L  +WVMTCA++P+
Sbjct: 65  RTLKGHLAKIYAMHWSTDRRHLVSASQDGKLIIWDAYTTNKVHAIPLRSSWVMTCAYAPS 124

Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
           G  VACGGLD++CSI+NLN   ++DG   V+R LSGH GY+SCC+++ D    ++TSSGD
Sbjct: 125 GNYVACGGLDNICSIYNLNQ--NRDGPTRVARELSGHAGYLSCCRFINDRS--ILTSSGD 180

Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240
            TC+ WDI TG +   F     + H  DV+S+S++ +N   F+SG+CD+ A+LWD R A 
Sbjct: 181 MTCMKWDIETGTKQIEF-----ADHLGDVMSISLNPTNQNTFISGACDAFAKLWDIR-AG 234

Query: 241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300
           +AV+TF GHE D+N ++FFPDG+ F TGSDD TCRLFDIR   +L VY     E+ +  +
Sbjct: 235 KAVQTFAGHESDINAIQFFPDGHSFVTGSDDATCRLFDIRADRELNVY---GSESILCGI 291

Query: 301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360
           TS+A S+SGRLLFAGY + +C VWD    + V   GSL   HE R++CLG+S DG +LCT
Sbjct: 292 TSVATSVSGRLLFAGYDDFECKVWDVTRGEKV---GSLV-GHENRVSCLGVSNDGISLCT 347

Query: 361 GSWDTNLKV 369
           GSWD+ LK+
Sbjct: 348 GSWDSLLKI 356

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Cryphonectria parasitica (taxid: 5116)

>sp|Q6PH57|GBB1_DANRE Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Danio rerio GN=gnb1 PE=2 SV=1

 Score =  325 bits (833), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 163/357 (45%), Positives = 240/357 (67%), Gaps = 22/357 (6%)

Query: 16  IETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT---LQGHAGKVYS 72
           +  ++ LR+  +Q + Q+ D   A    +  +   +  P   +  RT   L+GH  K+Y+
Sbjct: 1   MSELDQLRQEAEQLKNQIRDARKACADATLSQITANIDPVGRIQMRTRRTLRGHLAKIYA 60

Query: 73  LDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132
           + W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++
Sbjct: 61  MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120

Query: 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 192
           CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG 
Sbjct: 121 CSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQ 175

Query: 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 252
           +T+ F     +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE D
Sbjct: 176 QTTTF-----AGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESD 228

Query: 253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312
           +N + FFP+GN F TGSDD TCRLFD+R   +L VY     +N I  +TS+AFS SGRLL
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMVYSH---DNIICGITSVAFSKSGRLL 285

Query: 313 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
            AGY + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LK+
Sbjct: 286 LAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
359807520	377	uncharacterized protein LOC100811645 [Gl	0.884	0.912	0.912	0.0
356517084	377	PREDICTED: guanine nucleotide-binding pr	0.940	0.970	0.901	0.0
5733806	377	G protein beta subunit [Pisum sativum]	0.884	0.912	0.901	0.0
224080325	377	predicted protein [Populus trichocarpa]	0.884	0.912	0.937	0.0
357467253	378	Guanine nucleotide-binding protein subun	0.940	0.968	0.901	0.0
356538779	377	PREDICTED: guanine nucleotide-binding pr	0.940	0.970	0.898	0.0
388491282	377	unknown [Lotus japonicus]	0.889	0.917	0.896	0.0
359475308	377	PREDICTED: guanine nucleotide-binding pr	0.940	0.970	0.920	0.0
255536823	377	guanine nucleotide-binding protein beta,	0.894	0.923	0.920	0.0
22476946	377	G protein beta subunit [Pisum sativum]	0.884	0.912	0.893	0.0

>gi|359807520|ref|NP_001240891.1| uncharacterized protein LOC100811645 [Glycine max] gi|255641913|gb|ACU21225.1| unknown [Glycine max]

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/366 (91%), Positives = 356/366 (97%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH AA ETVNSLRERLK++R  LLD D+AGY+RSQGR+PV+FGPTDLVCCRTL
Sbjct: 2   SVTELKERHLAATETVNSLRERLKERRLSLLDTDIAGYARSQGRSPVTFGPTDLVCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGHAGKVYSLDWTSE+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS
Sbjct: 62  QGHAGKVYSLDWTSEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCS+FNLNSPTD+DGNL VSRMLSGHKGYVS CQYVPDEDTHLIT SGDQTC
Sbjct: 122 VACGGLDSVCSLFNLNSPTDRDGNLAVSRMLSGHKGYVSSCQYVPDEDTHLITGSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADVLS+SI+GSNSRMFVSGSCDSTARLWDTRVASRAV
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDSTARLWDTRVASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           +TFHGH+GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY++QHG+NE  HVTSI
Sbjct: 242 QTFHGHQGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYHRQHGDNEAAHVTSI 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFS+SGRLLFAGY+NGDCYVWDTLLAKVVLNLGSLQN+HEGRI+CLGLSADGSALCTGSW
Sbjct: 302 AFSMSGRLLFAGYTNGDCYVWDTLLAKVVLNLGSLQNTHEGRISCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517084|ref|XP_003527220.1| PREDICTED: guanine nucleotide-binding protein subunit beta-2-like isoform 1 [Glycine max]

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/366 (90%), Positives = 350/366 (95%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH AA ET+NSLRERLK++R  LLD D+AGY+RSQGRAPV+FGPTDLVCCR L
Sbjct: 2   SVTELKERHLAATETINSLRERLKERRLSLLDTDIAGYARSQGRAPVTFGPTDLVCCRAL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWTSE+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS
Sbjct: 62  QGHTGKVYSLDWTSEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSP D+DGNL VS+MLSGHKGYVS CQYVPDEDTHL+T SGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPADRDGNLAVSQMLSGHKGYVSSCQYVPDEDTHLVTGSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTG RTSVFGGEFQSGHTADVLS+SI+GSNSRMFVSGSCDSTARLWDTRVASRAV
Sbjct: 182 VLWDITTGFRTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDSTARLWDTRVASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTFHGH GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY+QQHG+NE  HVTSI
Sbjct: 242 RTFHGHRGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYHQQHGDNEAAHVTSI 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLLFAGY+NGDCYVWDTLLAKVVLNLGSLQN+HE RI+CLGLSADGSALCTGSW
Sbjct: 302 AFSISGRLLFAGYTNGDCYVWDTLLAKVVLNLGSLQNTHEDRISCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTN+K+
Sbjct: 362 DTNIKI 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5733806|gb|AAD49742.1|AF170921_1 G protein beta subunit [Pisum sativum]

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/366 (90%), Positives = 352/366 (96%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH AA ETVN+LRERLKQ+R  LLD D+AGY+RSQGRAPV+FGPTD++CCRTL
Sbjct: 2   SVAELKERHIAATETVNNLRERLKQRRLSLLDTDIAGYARSQGRAPVTFGPTDILCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWTSE+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS
Sbjct: 62  QGHTGKVYSLDWTSEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSPTD+DGNL VSRMLSGHKGYVS CQYVP EDTHLIT SGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPTDRDGNLNVSRMLSGHKGYVSSCQYVPGEDTHLITGSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADVLS+SI+GSNS++FVSGSCD+TARLWDTRVASRAV
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVLSISINGSNSKLFVSGSCDATARLWDTRVASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTFHGHEGDVN+VKFFPDGNRFGTGS+DGTCRLFDIRTGHQLQVY QQH +NE+ HVTSI
Sbjct: 242 RTFHGHEGDVNSVKFFPDGNRFGTGSEDGTCRLFDIRTGHQLQVYNQQHQDNEMAHVTSI 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLL AGY+NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG+SADGSALCTGSW
Sbjct: 302 AFSISGRLLIAGYTNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGMSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080325|ref|XP_002306098.1| predicted protein [Populus trichocarpa] gi|222849062|gb|EEE86609.1| predicted protein [Populus trichocarpa]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/366 (93%), Positives = 352/366 (96%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SVSELKERH AA ETVNSLRERLKQKR  LLD D+A Y+R+Q R+PVSFGPTDLVCCRTL
Sbjct: 2   SVSELKERHVAATETVNSLRERLKQKRLLLLDTDMARYARAQERSPVSFGPTDLVCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWT ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS
Sbjct: 62  QGHTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVS CQYVPDEDTHLITSSGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSSCQYVPDEDTHLITSSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTG+RTSVFGGEFQSGHTADVLSVSI+GSNSRMFVSGSCDSTARLWDTRVASRAV
Sbjct: 182 VLWDITTGIRTSVFGGEFQSGHTADVLSVSINGSNSRMFVSGSCDSTARLWDTRVASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTFHGHEGDVN VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY QHG+ EIPHVTSI
Sbjct: 242 RTFHGHEGDVNAVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYHQHGDTEIPHVTSI 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLLFAGYSNGDCYVWDTLLA+ VLNLGSLQNSHEGRITCLGLSADGSALCTGSW
Sbjct: 302 AFSISGRLLFAGYSNGDCYVWDTLLAEAVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467253|ref|XP_003603911.1| Guanine nucleotide-binding protein subunit beta-1 [Medicago truncatula] gi|355492959|gb|AES74162.1| Guanine nucleotide-binding protein subunit beta-1 [Medicago truncatula]

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/367 (90%), Positives = 352/367 (95%), Gaps = 1/367 (0%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH AA ETVN+LRERLKQ+R  LLD D+AGY++SQGR PV+FGPTD++CCRTL
Sbjct: 2   SVTELKERHIAATETVNNLRERLKQRRLSLLDTDIAGYAKSQGRTPVTFGPTDILCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWTSE+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS
Sbjct: 62  QGHTGKVYSLDWTSEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSPTD+DGNL VSRMLSGHKGYVS CQYVP EDTHLIT SGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPTDRDGNLNVSRMLSGHKGYVSSCQYVPGEDTHLITGSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADVLS+SI+GSNS+MFVSGSCD+TARLWDTRVASRAV
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVLSISINGSNSKMFVSGSCDATARLWDTRVASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-GENEIPHVTS 302
           RTFHGHEGDVN+VKFFPDGNRFGTGS+DGTCRLFDIRTGHQLQVY QQH G+NE+ HVTS
Sbjct: 242 RTFHGHEGDVNSVKFFPDGNRFGTGSEDGTCRLFDIRTGHQLQVYNQQHSGDNEMAHVTS 301

Query: 303 IAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362
           IAFSISGRLL AGY+NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS
Sbjct: 302 IAFSISGRLLIAGYTNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 361

Query: 363 WDTNLKV 369
           WDTNLK+
Sbjct: 362 WDTNLKI 368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538779|ref|XP_003537878.1| PREDICTED: guanine nucleotide-binding protein subunit beta-2-like [Glycine max]

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/366 (89%), Positives = 350/366 (95%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH+AA +TVN+LR RLKQKR  LLD D++GY+RSQGR PV+FGPTDLVCCRTL
Sbjct: 2   SVTELKERHSAATDTVNNLRHRLKQKRLSLLDTDISGYARSQGRTPVTFGPTDLVCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWTSE+++IVSASQDGRLIVWNALT QK HAIKLPCAWVMTCAFSPTGQS
Sbjct: 62  QGHTGKVYSLDWTSEKSQIVSASQDGRLIVWNALTRQKIHAIKLPCAWVMTCAFSPTGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVS CQYVPDEDTHLIT SGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSSCQYVPDEDTHLITGSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGL+TSVFGGEFQSGHTADVLS+SI+GSNSRMFVSGSCD+TARLWDTRVASRAV
Sbjct: 182 VLWDITTGLKTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDATARLWDTRVASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTFHGHEGDVN VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH +NEIP VTSI
Sbjct: 242 RTFHGHEGDVNAVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHSDNEIPPVTSI 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFS SGRLLFAGY+NGDCYVWDTLLAKVVLN+GSLQ+SHE RI+CLGLSADGSALCTGSW
Sbjct: 302 AFSASGRLLFAGYTNGDCYVWDTLLAKVVLNIGSLQDSHEDRISCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491282|gb|AFK33707.1| unknown [Lotus japonicus]

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/366 (89%), Positives = 349/366 (95%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH  A ETVN+LRERLKQKR  LLD D++GY++SQGRAPV+FGPTD++CCRTL
Sbjct: 2   SVTELKERHLTAAETVNNLRERLKQKRLSLLDTDISGYAKSQGRAPVTFGPTDILCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVY+LDWTSE+NRIVS SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS
Sbjct: 62  QGHTGKVYALDWTSEKNRIVSTSQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNS TD+DGNL VSRMLSGHKGYVS CQYVPDEDTHLIT SGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSSTDRDGNLNVSRMLSGHKGYVSSCQYVPDEDTHLITGSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADVLS+SI+GSNSRMFVSGSCD TARLWDTRVASRAV
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDGTARLWDTRVASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           +TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ QVYYQQH +NEIPHVTS+
Sbjct: 242 QTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQRQVYYQQHSDNEIPHVTSM 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AF ISGRLLFAGY+NG CYVWDTLLAKVVLNLGSLQNSH+GRI+CLGLSADGSALCTGSW
Sbjct: 302 AFPISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQNSHDGRISCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475308|ref|XP_003631647.1| PREDICTED: guanine nucleotide-binding protein subunit beta-2-like [Vitis vinifera] gi|297741450|emb|CBI32581.3| unnamed protein product [Vitis vinifera]

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/366 (92%), Positives = 355/366 (96%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH AA ETVNSLRERLKQKR  LLD DVAGY+R+QG++PV+FGPTDLVCCRTL
Sbjct: 2   SVAELKERHMAATETVNSLRERLKQKRLLLLDTDVAGYARAQGKSPVTFGPTDLVCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWT+E+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP+GQS
Sbjct: 62  QGHTGKVYSLDWTTEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPSGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSPTDKDGNL +S+MLSGHKGYVS CQYVPDEDTHLITSSGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPTDKDGNLAMSKMLSGHKGYVSSCQYVPDEDTHLITSSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD+TARLWDTR ASRAV
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDATARLWDTRAASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTFHGHEGDVNTV+FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ+HG+NE PHVTSI
Sbjct: 242 RTFHGHEGDVNTVRFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQEHGDNEAPHVTSI 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH+ RI+CLGLSADGSALCTGSW
Sbjct: 302 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHDSRISCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536823|ref|XP_002509478.1| guanine nucleotide-binding protein beta, putative [Ricinus communis] gi|223549377|gb|EEF50865.1| guanine nucleotide-binding protein beta, putative [Ricinus communis]

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/366 (92%), Positives = 355/366 (96%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELK RH AA ETVN+LRERLKQKR  LLD DVAGY+R+QG+ PVSFGPTDLVCCRTL
Sbjct: 2   SVAELKARHVAATETVNTLRERLKQKRLLLLDTDVAGYARAQGKTPVSFGPTDLVCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWT+E+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS
Sbjct: 62  QGHTGKVYSLDWTAEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSPT+KDGNLPVS+MLSGHKGYVS CQYVPDEDTHLITSSGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPTEKDGNLPVSKMLSGHKGYVSACQYVPDEDTHLITSSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADVLSVSI+GSNSRMFVSGSCDSTARLWDTRVASRAV
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVLSVSINGSNSRMFVSGSCDSTARLWDTRVASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTFHGHEGDV+ VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH +NE+PHVTSI
Sbjct: 242 RTFHGHEGDVSAVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHNDNEVPHVTSI 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLLFAGYSNGDCYVWDTLLA+VVL+LGSLQNSHEGRI+CLGLSADGSALCTGS+
Sbjct: 302 AFSISGRLLFAGYSNGDCYVWDTLLAQVVLDLGSLQNSHEGRISCLGLSADGSALCTGSY 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22476946|gb|AAM97354.1| G protein beta subunit [Pisum sativum]

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/366 (89%), Positives = 350/366 (95%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+++KERH AA ETVN+LRERLKQ+R  LLD D+AGY+RSQGRAPV+ GPTD++CCRTL
Sbjct: 2   SVADVKERHIAATETVNNLRERLKQRRLSLLDTDIAGYARSQGRAPVTLGPTDILCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWTSE+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS
Sbjct: 62  QGHTGKVYSLDWTSEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSPTD+DGNL VSRMLSGHKGYVS CQYVP EDTHLIT SGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPTDRDGNLNVSRMLSGHKGYVSSCQYVPGEDTHLITGSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADVLS+SI+GSNS++FVSGSCD+TARLWDTRVASRAV
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVLSISINGSNSKLFVSGSCDATARLWDTRVASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTFHGHEGDVN VKFFPDGNRFGTGS+DGTCRLFDIRTGHQLQVY QQH +NE+ HVTSI
Sbjct: 242 RTFHGHEGDVNPVKFFPDGNRFGTGSEDGTCRLFDIRTGHQLQVYNQQHQDNEMAHVTSI 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLL AGY+NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG+SADGSALCTGSW
Sbjct: 302 AFSISGRLLIAGYTNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGMSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
UNIPROTKB|P93397	377	P93397 "Guanine nucleotide-bin	0.940	0.970	0.890	5.4e-182
UNIPROTKB|Q40687	380	LOC_Os03g46650 "Guanine nucleo	0.943	0.965	0.815	2.8e-169
TAIR|locus:2139489	377	AGB1 "AT4G34460" [Arabidopsis	0.938	0.968	0.836	7.4e-169
UNIPROTKB|Q9HAV0	340	GNB4 "Guanine nucleotide-bindi	0.755	0.864	0.471	2.4e-85
UNIPROTKB|P11017	340	GNB2 "Guanine nucleotide-bindi	0.750	0.858	0.477	5e-85
UNIPROTKB|E2RD95	340	GNB2 "Uncharacterized protein"	0.750	0.858	0.477	5e-85
UNIPROTKB|P62879	340	GNB2 "Guanine nucleotide-bindi	0.750	0.858	0.477	5e-85
MGI|MGI:95784	340	Gnb2 "guanine nucleotide bindi	0.750	0.858	0.477	5e-85
RGD|69319	340	Gnb2 "guanine nucleotide bindi	0.750	0.858	0.477	5e-85
RGD|1359321	340	Gnb4 "guanine nucleotide bindi	0.755	0.864	0.471	5.7e-84

UNIPROTKB|P93397 P93397 "Guanine nucleotide-binding protein subunit beta-1" [Nicotiana tabacum (taxid:4097)]

 Score = 1766 (626.7 bits), Expect = 5.4e-182, P = 5.4e-182
 Identities = 326/366 (89%), Positives = 345/366 (94%)

Query:     4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
             SV+ELKERH AA +TVN LRE+LKQKR QLLD DV+GY+RSQG+ PV+FGPTDLVCCR L
Sbjct:     2 SVTELKERHMAATQTVNDLREKLKQKRLQLLDTDVSGYARSQGKTPVTFGPTDLVCCRIL 61

Query:    64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
             QGH GKVYSLDWT E+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP+GQS
Sbjct:    62 QGHTGKVYSLDWTPEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPSGQS 121

Query:   124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
             VACGGLDSVCSIFNLNSP DKDGN PVSRMLSGHKGYVS CQYVPDEDTHLITSSGDQTC
Sbjct:   122 VACGGLDSVCSIFNLNSPIDKDGNHPVSRMLSGHKGYVSSCQYVPDEDTHLITSSGDQTC 181

Query:   184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
             VLWDITTGLRTSVFGGEFQSGHTADV SVSIS SN R+FVSGSCD+TARLWDTRVASRA 
Sbjct:   182 VLWDITTGLRTSVFGGEFQSGHTADVQSVSISSSNPRLFVSGSCDTTARLWDTRVASRAQ 241

Query:   244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
             RTF+GHEGDVNTVKFFPDGNRFGTGS+DGTCRLFDIRT HQLQVYYQ HG+ +IPHVTS+
Sbjct:   242 RTFYGHEGDVNTVKFFPDGNRFGTGSEDGTCRLFDIRTEHQLQVYYQPHGDGDIPHVTSM 301

Query:   304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
             AFSISGRLLF GYSNGDCYVWDTLLAKVVLNLG +QNSHEGRI+CLGLSADGSALCTGSW
Sbjct:   302 AFSISGRLLFVGYSNGDCYVWDTLLAKVVLNLGGVQNSHEGRISCLGLSADGSALCTGSW 361

Query:   364 DTNLKV 369
             DTNLK+
Sbjct:   362 DTNLKI 367

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q40687 LOC_Os03g46650 "Guanine nucleotide-binding protein subunit beta" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1646 (584.5 bits), Expect = 2.8e-169, P = 2.8e-169
 Identities = 301/369 (81%), Positives = 336/369 (91%)

Query:     3 SSVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT 62
             +SV+ELKE+HAAA  +VNSLRERL+Q+RQ LLD DV  YSR+QGR PVSF PTDLVCCRT
Sbjct:     2 ASVAELKEKHAAATASVNSLRERLRQRRQMLLDTDVERYSRTQGRTPVSFNPTDLVCCRT 61

Query:    63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122
             LQGH+GKVYSLDWT E+N IVSASQDGRLIVWNALTSQKTHAIKL C WVMTCAF+P GQ
Sbjct:    62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMTCAFAPNGQ 121

Query:   123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182
             SVACGGLDS CSIFNLNS  D+DGN+PVSR+L+GHKGYVS CQYVPD++T LITSSGDQT
Sbjct:   122 SVACGGLDSACSIFNLNSQADRDGNIPVSRILTGHKGYVSSCQYVPDQETRLITSSGDQT 181

Query:   183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA 242
             CVLWD+TTG R S+FGGEF SGHTADVLS+SI+ SNS MFVSGSCD+T RLWD R+ASRA
Sbjct:   182 CVLWDVTTGQRISIFGGEFPSGHTADVLSLSINSSNSNMFVSGSCDATVRLWDIRIASRA 241

Query:   243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ--HGENEIPHV 300
             VRT+HGHEGD+N+VKFFPDG RFGTGSDDGTCRLFD+RTGHQLQVY ++    +NE+P V
Sbjct:   242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDVRTGHQLQVYSREPDRNDNELPTV 301

Query:   301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360
             TSIAFSISGRLLFAGYSNGDCYVWDTLLA+VVLNLG+LQNSHEGRI+CLGLS+DGSALCT
Sbjct:   302 TSIAFSISGRLLFAGYSNGDCYVWDTLLAEVVLNLGNLQNSHEGRISCLGLSSDGSALCT 361

Query:   361 GSWDTNLKV 369
             GSWD NLK+
Sbjct:   362 GSWDKNLKI 370

GO:0005515 "protein binding" evidence=IPI

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEP;ISS

TAIR|locus:2139489 AGB1 "AT4G34460" [Arabidopsis thaliana (taxid:3702)]

 Score = 1642 (583.1 bits), Expect = 7.4e-169, P = 7.4e-169
 Identities = 307/367 (83%), Positives = 332/367 (90%)

Query:     4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
             SVSELKERHA A ETVN+LR++L+Q+R QLLD DVA YS +QGR  VSFG TDLVCCRTL
Sbjct:     2 SVSELKERHAVATETVNNLRDQLRQRRLQLLDTDVARYSAAQGRTRVSFGATDLVCCRTL 61

Query:    64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
             QGH GKVYSLDWT ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP GQS
Sbjct:    62 QGHTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNGQS 121

Query:   124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
             VACGGLDSVCSIF+L+S  DKDG +PVSRML+GH+GYVSCCQYVP+ED HLITSSGDQTC
Sbjct:   122 VACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTC 181

Query:   184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
             +LWD+TTGL+TSVFGGEFQSGHTADVLSVSISGSN   F+SGSCDSTARLWDTR ASRAV
Sbjct:   182 ILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTARLWDTRAASRAV 241

Query:   244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
             RTFHGHEGDVNTVKFFPDG RFGTGSDDGTCRL+DIRTGHQLQVY Q HG+ E   VTSI
Sbjct:   242 RTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGHQLQVY-QPHGDGENGPVTSI 300

Query:   304 AFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362
             AFS+SGRLLFAGY SN  CYVWDTLL +VVL+LG  Q+SH  RI+CLGLSADGSALCTGS
Sbjct:   301 AFSVSGRLLFAGYASNNTCYVWDTLLGEVVLDLGLQQDSHRNRISCLGLSADGSALCTGS 360

Query:   363 WDTNLKV 369
             WD+NLK+
Sbjct:   361 WDSNLKI 367

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS;IDA;IPI

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=ISS

GO:0009887 "organ morphogenesis" evidence=IMP

GO:0010154 "fruit development" evidence=IMP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0009845 "seed germination" evidence=IEP;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA;IMP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI

GO:0009723 "response to ethylene stimulus" evidence=RCA;IMP

GO:0048364 "root development" evidence=IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0009991 "response to extracellular stimulus" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

UNIPROTKB|Q9HAV0 GNB4 "Guanine nucleotide-binding protein subunit beta-4" [Homo sapiens (taxid:9606)]

 Score = 735 (263.8 bits), Expect = 2.4e-85, Sum P(2) = 2.4e-85
 Identities = 147/312 (47%), Positives = 210/312 (67%)

Query:    19 VNSLRERLKQKRQQLLDVDVAGYSRS--QGRAPV-SFGPTDLVCCRTLQGHAGKVYSLDW 75
             +  LR+  +Q R Q+ D   A    +  Q  + + S G   +   RTL+GH  K+Y++ W
Sbjct:     4 LEQLRQEAEQLRNQIQDARKACNDATLVQITSNMDSVGRIQMRTRRTLRGHLAKIYAMHW 63

Query:    76 TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135
               +   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI
Sbjct:    64 GYDSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123

Query:   136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
             +NL +   ++GN+ VSR L GH GY+SCC+++  +D+ ++TSSGD TC LWDI T  +T+
Sbjct:   124 YNLKT---REGNVRVSRELPGHTGYLSCCRFL--DDSQIVTSSGDTTCALWDIETAQQTT 178

Query:   196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255
              F     +GH+ DV+S+S+S  + R FVSG+CD++++LWD R      ++F GH  D+N 
Sbjct:   179 TF-----TGHSGDVMSLSLS-PDMRTFVSGACDASSKLWDIR-DGMCRQSFTGHVSDINA 231

Query:   256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315
             V FFP+G  F TGSDD TCRLFD+R   +L +Y   H +N I  +TS+AFS SGRLL AG
Sbjct:   232 VSFFPNGYAFATGSDDATCRLFDLRADQELLLY--SH-DNIICGITSVAFSKSGRLLLAG 288

Query:   316 YSNGDCYVWDTL 327
             Y + +C VWDTL
Sbjct:   289 YDDFNCNVWDTL 300

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0071377 "cellular response to glucagon stimulus" evidence=TAS

UNIPROTKB|P11017 GNB2 "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2" [Bos taurus (taxid:9913)]

 Score = 740 (265.6 bits), Expect = 5.0e-85, Sum P(2) = 5.0e-85
 Identities = 150/314 (47%), Positives = 211/314 (67%)

Query:    19 VNSLRERLKQKRQQLLDVDVA-GYSR----SQGRAPVSFGPTDLVCCRTLQGHAGKVYSL 73
             +  LR+  +Q R Q+ D   A G S     + G  PV  G   +   RTL+GH  K+Y++
Sbjct:     4 LEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPV--GRIQMRTRRTLRGHLAKIYAM 61

Query:    74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC 133
              W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++C
Sbjct:    62 HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNIC 121

Query:   134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 193
             SI++L +   ++GN+ VSR L GH GY+SCC+++  +D  +ITSSGD TC LWDI TG +
Sbjct:   122 SIYSLKT---REGNVRVSRELPGHTGYLSCCRFL--DDNQIITSSGDTTCALWDIETGQQ 176

Query:   194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDV 253
             T  F     +GH+ DV+S+S++  + R FVSG+CD++ +LWD R  S   +TF GHE D+
Sbjct:   177 TVGF-----AGHSGDVMSLSLA-PDGRTFVSGACDASIKLWDVR-DSMCRQTFIGHESDI 229

Query:   254 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF 313
             N V FFP+G  F TGSDD TCRLFD+R   +L +Y   H +N I  +TS+AFS SGRLL 
Sbjct:   230 NAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMY--SH-DNIICGITSVAFSRSGRLLL 286

Query:   314 AGYSNGDCYVWDTL 327
             AGY + +C +WD +
Sbjct:   287 AGYDDFNCNIWDAM 300

GO:0006184 "GTP catabolic process" evidence=IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0051020 "GTPase binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|E2RD95 GNB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 740 (265.6 bits), Expect = 5.0e-85, Sum P(2) = 5.0e-85
 Identities = 150/314 (47%), Positives = 211/314 (67%)

Query:    19 VNSLRERLKQKRQQLLDVDVA-GYSR----SQGRAPVSFGPTDLVCCRTLQGHAGKVYSL 73
             +  LR+  +Q R Q+ D   A G S     + G  PV  G   +   RTL+GH  K+Y++
Sbjct:     4 LEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPV--GRIQMRTRRTLRGHLAKIYAM 61

Query:    74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC 133
              W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++C
Sbjct:    62 HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNIC 121

Query:   134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 193
             SI++L +   ++GN+ VSR L GH GY+SCC+++  +D  +ITSSGD TC LWDI TG +
Sbjct:   122 SIYSLKT---REGNVRVSRELPGHTGYLSCCRFL--DDNQIITSSGDTTCALWDIETGQQ 176

Query:   194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDV 253
             T  F     +GH+ DV+S+S++  + R FVSG+CD++ +LWD R  S   +TF GHE D+
Sbjct:   177 TVGF-----AGHSGDVMSLSLA-PDGRTFVSGACDASIKLWDVR-DSMCRQTFIGHESDI 229

Query:   254 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF 313
             N V FFP+G  F TGSDD TCRLFD+R   +L +Y   H +N I  +TS+AFS SGRLL 
Sbjct:   230 NAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMY--SH-DNIICGITSVAFSRSGRLLL 286

Query:   314 AGYSNGDCYVWDTL 327
             AGY + +C +WD +
Sbjct:   287 AGYDDFNCNIWDAM 300

GO:0051020 "GTPase binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|P62879 GNB2 "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2" [Homo sapiens (taxid:9606)]

 Score = 740 (265.6 bits), Expect = 5.0e-85, Sum P(2) = 5.0e-85
 Identities = 150/314 (47%), Positives = 211/314 (67%)

Query:    19 VNSLRERLKQKRQQLLDVDVA-GYSR----SQGRAPVSFGPTDLVCCRTLQGHAGKVYSL 73
             +  LR+  +Q R Q+ D   A G S     + G  PV  G   +   RTL+GH  K+Y++
Sbjct:     4 LEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPV--GRIQMRTRRTLRGHLAKIYAM 61

Query:    74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC 133
              W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++C
Sbjct:    62 HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNIC 121

Query:   134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 193
             SI++L +   ++GN+ VSR L GH GY+SCC+++  +D  +ITSSGD TC LWDI TG +
Sbjct:   122 SIYSLKT---REGNVRVSRELPGHTGYLSCCRFL--DDNQIITSSGDTTCALWDIETGQQ 176

Query:   194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDV 253
             T  F     +GH+ DV+S+S++  + R FVSG+CD++ +LWD R  S   +TF GHE D+
Sbjct:   177 TVGF-----AGHSGDVMSLSLA-PDGRTFVSGACDASIKLWDVR-DSMCRQTFIGHESDI 229

Query:   254 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF 313
             N V FFP+G  F TGSDD TCRLFD+R   +L +Y   H +N I  +TS+AFS SGRLL 
Sbjct:   230 NAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMY--SH-DNIICGITSVAFSRSGRLLL 286

Query:   314 AGYSNGDCYVWDTL 327
             AGY + +C +WD +
Sbjct:   287 AGYDDFNCNIWDAM 300

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005246 "calcium channel regulator activity" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0044297 "cell body" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0051020 "GTPase binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=TAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0071377 "cellular response to glucagon stimulus" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=TAS

MGI|MGI:95784 Gnb2 "guanine nucleotide binding protein (G protein), beta 2" [Mus musculus (taxid:10090)]

 Score = 740 (265.6 bits), Expect = 5.0e-85, Sum P(2) = 5.0e-85
 Identities = 150/314 (47%), Positives = 211/314 (67%)

Query:    19 VNSLRERLKQKRQQLLDVDVA-GYSR----SQGRAPVSFGPTDLVCCRTLQGHAGKVYSL 73
             +  LR+  +Q R Q+ D   A G S     + G  PV  G   +   RTL+GH  K+Y++
Sbjct:     4 LEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPV--GRIQMRTRRTLRGHLAKIYAM 61

Query:    74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC 133
              W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++C
Sbjct:    62 HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNIC 121

Query:   134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 193
             SI++L +   ++GN+ VSR L GH GY+SCC+++  +D  +ITSSGD TC LWDI TG +
Sbjct:   122 SIYSLKT---REGNVRVSRELPGHTGYLSCCRFL--DDNQIITSSGDTTCALWDIETGQQ 176

Query:   194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDV 253
             T  F     +GH+ DV+S+S++  + R FVSG+CD++ +LWD R  S   +TF GHE D+
Sbjct:   177 TVGF-----AGHSGDVMSLSLA-PDGRTFVSGACDASIKLWDVR-DSMCRQTFIGHESDI 229

Query:   254 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF 313
             N V FFP+G  F TGSDD TCRLFD+R   +L +Y   H +N I  +TS+AFS SGRLL 
Sbjct:   230 NAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMY--SH-DNIICGITSVAFSRSGRLLL 286

Query:   314 AGYSNGDCYVWDTL 327
             AGY + +C +WD +
Sbjct:   287 AGYDDFNCNIWDAM 300

GO:0003924 "GTPase activity" evidence=ISA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005246 "calcium channel regulator activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISA

GO:0006184 "GTP catabolic process" evidence=ISA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0043234 "protein complex" evidence=ISO

GO:0044297 "cell body" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0051020 "GTPase binding" evidence=ISO

RGD|69319 Gnb2 "guanine nucleotide binding protein (G protein), beta polypeptide 2" [Rattus norvegicus (taxid:10116)]

 Score = 740 (265.6 bits), Expect = 5.0e-85, Sum P(2) = 5.0e-85
 Identities = 150/314 (47%), Positives = 211/314 (67%)

Query:    19 VNSLRERLKQKRQQLLDVDVA-GYSR----SQGRAPVSFGPTDLVCCRTLQGHAGKVYSL 73
             +  LR+  +Q R Q+ D   A G S     + G  PV  G   +   RTL+GH  K+Y++
Sbjct:     4 LEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPV--GRIQMRTRRTLRGHLAKIYAM 61

Query:    74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC 133
              W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++C
Sbjct:    62 HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNIC 121

Query:   134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 193
             SI++L +   ++GN+ VSR L GH GY+SCC+++  +D  +ITSSGD TC LWDI TG +
Sbjct:   122 SIYSLKT---REGNVRVSRELPGHTGYLSCCRFL--DDNQIITSSGDTTCALWDIETGQQ 176

Query:   194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDV 253
             T  F     +GH+ DV+S+S++  + R FVSG+CD++ +LWD R  S   +TF GHE D+
Sbjct:   177 TVGF-----AGHSGDVMSLSLA-PDGRTFVSGACDASIKLWDVR-DSMCRQTFIGHESDI 229

Query:   254 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF 313
             N V FFP+G  F TGSDD TCRLFD+R   +L +Y   H +N I  +TS+AFS SGRLL 
Sbjct:   230 NAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMY--SH-DNIICGITSVAFSRSGRLLL 286

Query:   314 AGYSNGDCYVWDTL 327
             AGY + +C +WD +
Sbjct:   287 AGYDDFNCNIWDAM 300

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005246 "calcium channel regulator activity" evidence=IMP

GO:0043234 "protein complex" evidence=IDA

GO:0044297 "cell body" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS

GO:0051020 "GTPase binding" evidence=IEA;ISO

RGD|1359321 Gnb4 "guanine nucleotide binding protein (G protein), beta polypeptide 4" [Rattus norvegicus (taxid:10116)]

 Score = 728 (261.3 bits), Expect = 5.7e-84, Sum P(2) = 5.7e-84
 Identities = 147/312 (47%), Positives = 208/312 (66%)

Query:    19 VNSLRERLKQKRQQLLDVDVAGYSRS--QGRAPV-SFGPTDLVCCRTLQGHAGKVYSLDW 75
             +  LR+  +Q R Q+ D   A    +  Q  + + S G   +   RTL+GH  K+Y++ W
Sbjct:     4 LEQLRQEAEQLRNQIQDARKACNDATLVQITSNMDSVGRIQMRTRRTLRGHLAKIYAMHW 63

Query:    76 TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135
               +   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI
Sbjct:    64 GYDSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123

Query:   136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
             +NL +   ++GN+ VSR L GH GY+SCC+++  +D  +ITSSGD TC LWDI TG +T+
Sbjct:   124 YNLKT---REGNVRVSRELPGHTGYLSCCRFL--DDGQIITSSGDTTCALWDIETGQQTT 178

Query:   196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255
              F     +GH+ DV+S+S+S  + + FVSG+CD++++LWD R      ++F GH  D+N 
Sbjct:   179 TF-----TGHSGDVMSLSLS-PDLKTFVSGACDASSKLWDIR-DGMCRQSFTGHISDINA 231

Query:   256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315
             V FFP G  F TGSDD TCRLFD+R   +L +Y   H +N I  +TS+AFS SGRLL AG
Sbjct:   232 VSFFPSGYAFATGSDDATCRLFDLRADQELLLY--SH-DNIICGITSVAFSKSGRLLLAG 288

Query:   316 YSNGDCYVWDTL 327
             Y + +C VWD L
Sbjct:   289 YDDFNCSVWDAL 300

GO:0004871 "signal transducer activity" evidence=IEA

GO:0044297 "cell body" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93339	GBB_NICPL	No assigned EC number	0.8743	0.8946	0.9230	N/A	no
Q40507	GBB3_TOBAC	No assigned EC number	0.8852	0.8894	0.9226	N/A	no
P16520	GBB3_HUMAN	No assigned EC number	0.4522	0.8483	0.9705	yes	no
P17343	GBB1_CAEEL	No assigned EC number	0.4602	0.8688	0.9941	yes	no
P93563	GBB_SOLTU	No assigned EC number	0.8825	0.8946	0.9230	N/A	no
Q40687	GBB_ORYSJ	No assigned EC number	0.8157	0.9434	0.9657	yes	no
Q6PH57	GBB1_DANRE	No assigned EC number	0.4565	0.8611	0.9852	yes	no
P79147	GBB3_CANFA	No assigned EC number	0.4463	0.8534	0.9764	yes	no
Q61011	GBB3_MOUSE	No assigned EC number	0.4578	0.8483	0.9705	yes	no
P49177	GBB_ARATH	No assigned EC number	0.8365	0.9383	0.9681	yes	no
P49178	GBB_MAIZE	No assigned EC number	0.8048	0.9434	0.9657	N/A	no
P52287	GBB3_RAT	No assigned EC number	0.4494	0.8483	0.9705	yes	no
P93397	GBB1_TOBAC	No assigned EC number	0.8907	0.8894	0.9177	N/A	no
P26308	GBB1_DROME	No assigned EC number	0.4537	0.8611	0.9852	yes	no
P93398	GBB2_TOBAC	No assigned EC number	0.8961	0.8946	0.9230	N/A	no
P36408	GBB_DICDI	No assigned EC number	0.4505	0.8817	0.9884	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	389
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-74
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-44
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-36
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-35
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-31
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-30
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-08
smart00320	40	smart00320, WD40, WD40 repeats	6e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-08
smart00320	40	smart00320, WD40, WD40 repeats	4e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-04
smart00320	40	smart00320, WD40, WD40 repeats	5e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-04
smart00320	40	smart00320, WD40, WD40 repeats	7e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  232 bits (595), Expect = 2e-74
 Identities = 102/313 (32%), Positives = 147/313 (46%), Gaps = 28/313 (8%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
             RTL+GH G V  + ++ +   + + S DG + VW+  T +    +K     V   A S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
             G  +A G  D    +++L +           R L+GH  YVS   + P  D  +++SS
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETG-------ECVRTLTGHTSYVSSVAFSP--DGRILSSS 111

Query: 179 G-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDT 236
             D+T  +WD+ TG   +        GHT  V SV+ S      FV+ S  D T +LWD 
Sbjct: 112 SRDKTIKVWDVETGKCLTTL-----RGHTDWVNSVAFSPDG--TFVASSSQDGTIKLWDL 164

Query: 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 296
           R   + V T  GH G+VN+V F PDG +  + S DGT +L+D+ TG  L       G   
Sbjct: 165 R-TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL---RGHEN 220

Query: 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 356
              V S+AFS  G LL +G  +G   VWD    + V  L      H   +T L  S DG 
Sbjct: 221 G--VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS----GHTNSVTSLAWSPDGK 274

Query: 357 ALCTGSWDTNLKV 369
            L +GS D  +++
Sbjct: 275 RLASGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  155 bits (393), Expect = 2e-44
 Identities = 83/267 (31%), Positives = 134/267 (50%), Gaps = 20/267 (7%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
             RTL+GH G V  +  +++   + S S D  + +W+  T +    +    ++V + AFS
Sbjct: 43  LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS 102

Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
           P G+ ++    D    ++++ +             L GH  +V+   + PD  T + +SS
Sbjct: 103 PDGRILSSSSRDKTIKVWDVETGKCL-------TTLRGHTDWVNSVAFSPD-GTFVASSS 154

Query: 179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
            D T  LWD+ TG   +       +GHT +V SV+ S    +  +S S D T +LWD   
Sbjct: 155 QDGTIKLWDLRTGKCVATL-----TGHTGEVNSVAFSPDGEK-LLSSSSDGTIKLWDLS- 207

Query: 239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298
             + + T  GHE  VN+V F PDG    +GS+DGT R++D+RTG  +Q     H      
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL-SGHTN---- 262

Query: 299 HVTSIAFSISGRLLFAGYSNGDCYVWD 325
            VTS+A+S  G+ L +G ++G   +WD
Sbjct: 263 SVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  138 bits (347), Expect = 1e-36
 Identities = 100/325 (30%), Positives = 147/325 (45%), Gaps = 26/325 (8%)

Query: 60  CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI--KLPCAWVMTCAF 117
              L+GH   + S+ ++ +   ++S S DG + +W+    +K       L  + V   A 
Sbjct: 58  SLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117

Query: 118 -SPTGQSVA--CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 174
            SP G S+      LD    +++L++P        + R L GH   V+   + PD     
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPG------KLIRTLEGHSESVTSLAFSPDGKLLA 171

Query: 175 ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 234
             SS D T  LWD+ TG   S       +GHT  V S++ S     +  SGS D T RLW
Sbjct: 172 SGSSLDGTIKLWDLRTGKPLSTL-----AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226

Query: 235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294
           D         T  GH   V +  F PDG+   +GS DGT RL+D+R+   L      H  
Sbjct: 227 DLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285

Query: 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354
                V S+AFS  G+LL +G S+G   +WD    K++ +L      HEG ++ L  S D
Sbjct: 286 ----SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK--GHEGPVSSLSFSPD 339

Query: 355 GSALCTGSWDTNLKVNLGFWRVQEG 379
           GS L +G  D      +  W ++ G
Sbjct: 340 GSLLVSGGSDDGT---IRLWDLRTG 361

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  133 bits (335), Expect = 6e-35
 Identities = 102/319 (31%), Positives = 157/319 (49%), Gaps = 27/319 (8%)

Query: 55  TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ-DGRLIVWNALTSQKTHAIKLPCAWVM 113
           T     RTL+GH+  V SL ++ +   + S S  DG + +W+  T +    +      V 
Sbjct: 143 TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS 202

Query: 114 TCAFSPTGQS-VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
           + AFSP G   +A G  D    +++L++         +   LSGH   V    + PD   
Sbjct: 203 SLAFSPDGGLLIASGSSDGTIRLWDLST------GKLLRSTLSGHSDSVVSS-FSPDGSL 255

Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
            L + S D T  LWD+ +            SGH++ VLSV+ S  + ++  SGS D T R
Sbjct: 256 -LASGSSDGTIRLWDLRSSSSLLRTL----SGHSSSVLSVAFSP-DGKLLASGSSDGTVR 309

Query: 233 LWDTR-VASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQ 290
           LWD       +  T  GHEG V+++ F PDG+   +G SDDGT RL+D+RTG  L+    
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG 369

Query: 291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 350
                    V S++FS  GR++ +G ++G   +WD     ++ NL    + H  R+T L 
Sbjct: 370 HSN------VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNL----DGHTSRVTSLD 419

Query: 351 LSADGSALCTGSWDTNLKV 369
            S DG +L +GS D  +++
Sbjct: 420 FSPDGKSLASGSSDNTIRL 438

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  124 bits (311), Expect = 1e-31
 Identities = 88/268 (32%), Positives = 125/268 (46%), Gaps = 18/268 (6%)

Query: 59  CCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF 117
              TL GH   V SL ++ +    I S S DG + +W+  T +   +     +  +  +F
Sbjct: 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF 249

Query: 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS 177
           SP G  +A G  D    +++L S      +  + R LSGH   V    + PD    L + 
Sbjct: 250 SPDGSLLASGSSDGTIRLWDLRS------SSSLLRTLSGHSSSVLSVAFSPDGKL-LASG 302

Query: 178 SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237
           S D T  LWD+ TG   S    +   GH   V S+S S   S +   GS D T RLWD R
Sbjct: 303 SSDGTVRLWDLETGKLLSSLTLK---GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359

Query: 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297
              + ++T  GH  +V +V F PDG    +GS DGT RL+D+ TG  L+           
Sbjct: 360 -TGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR--- 414

Query: 298 PHVTSIAFSISGRLLFAGYSNGDCYVWD 325
             VTS+ FS  G+ L +G S+    +WD
Sbjct: 415 --VTSLDFSPDGKSLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  119 bits (298), Expect = 9e-30
 Identities = 95/310 (30%), Positives = 141/310 (45%), Gaps = 27/310 (8%)

Query: 66  HAGKVYSLDWTS-ERNRIVSA--SQDGRLIVWNALTS-QKTHAIKLPCAWVMTCAFSPTG 121
           H   V  L  +S + N I+ A  S DG + +W+  T  +    ++     V + AFSP G
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG 167

Query: 122 Q-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
           +   +   LD    +++L +             L+GH   VS   + PD    + + S D
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPL-------STLAGHTDPVSSLAFSPDGGLLIASGSSD 220

Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240
            T  LWD++TG           SGH+  V  VS    +  +  SGS D T RLWD R +S
Sbjct: 221 GTIRLWDLSTGKLLR----STLSGHSDSV--VSSFSPDGSLLASGSSDGTIRLWDLRSSS 274

Query: 241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300
             +RT  GH   V +V F PDG    +GS DGT RL+D+ TG  L     +  E     V
Sbjct: 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP---V 331

Query: 301 TSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC 359
           +S++FS  G LL +G S +G   +WD    K +  L          +  +  S DG  + 
Sbjct: 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL-----EGHSNVLSVSFSPDGRVVS 386

Query: 360 TGSWDTNLKV 369
           +GS D  +++
Sbjct: 387 SGSTDGTVRL 396

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 92.8 bits (229), Expect = 1e-20
 Identities = 75/221 (33%), Positives = 109/221 (49%), Gaps = 15/221 (6%)

Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI-KLPCAWVMTCAFSPT 120
           TL GH+  V S  ++ + + + S S DG + +W+  +S           + V++ AFSP 
Sbjct: 237 TLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295

Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
           G+ +A G  D    +++L +     G L  S  L GH+G VS   + PD    +   S D
Sbjct: 296 GKLLASGSSDGTVRLWDLET-----GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD 350

Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240
            T  LWD+ TG       G       ++VLSVS S  + R+  SGS D T RLWD    S
Sbjct: 351 GTIRLWDLRTGKPLKTLEGH------SNVLSVSFS-PDGRVVSSGSTDGTVRLWDLSTGS 403

Query: 241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281
             +R   GH   V ++ F PDG    +GS D T RL+D++T
Sbjct: 404 L-LRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.8 bits (138), Expect = 4e-09
 Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 10/159 (6%)

Query: 56  DLVCCRTLQGHAGKVYSLDWTSERNRIVSA-SQDGRLIVWNALTSQKTHAIKLPCAWVMT 114
            L+   TL+GH G V SL ++ + + +VS  S DG + +W+  T +    ++   + V++
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLS 375

Query: 115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 174
            +FSP G+ V+ G  D    +++L++ +       + R L GH   V+   + PD    L
Sbjct: 376 VSFSPDGRVVSSGSTDGTVRLWDLSTGS-------LLRNLDGHTSRVTSLDFSPDGK-SL 427

Query: 175 ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213
            + S D T  LWD+ T L++  F  + +   +       
Sbjct: 428 ASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSDLSV 466

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.9 bits (128), Expect = 6e-08
 Identities = 40/192 (20%), Positives = 69/192 (35%), Gaps = 12/192 (6%)

Query: 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 252
            +       +       L+     S           +        +   +     GHE  
Sbjct: 8   SSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDS 67

Query: 253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312
           + ++ F PDG    +GS DGT +L+D+  G +L       G ++         S  G  +
Sbjct: 68  ITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL--IKSLEGLHDSSVSKLALSSPDGNSI 125

Query: 313 FAGYSNGD--CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKV 369
               S+ D    +WD  L+     + +L+  H   +T L  S DG  L +GS  D  +K+
Sbjct: 126 LLASSSLDGTVKLWD--LSTPGKLIRTLEG-HSESVTSLAFSPDGKLLASGSSLDGTIKL 182

Query: 370 NLGFWRVQEGAL 381
               W ++ G  
Sbjct: 183 ----WDLRTGKP 190

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 48.1 bits (115), Expect = 6e-08
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278
           ++T  GH G V +V F PDG    +GSDDGT +L+D
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278
           +RT  GH G V +V F PDGN   +GSDDGT R++D
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN 95
            +TL+GH G V S+ ++ +   + S S DG + +W+
Sbjct: 4  LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.0 bits (99), Expect = 8e-06
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN 95
             RTL+GH G V S+ ++ + N + S S DG + VW+
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 58  VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN 95
            C +TL GH   V SL W+ +  R+ S S DG + +W+
Sbjct: 252 ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 235
            GHT  V SV+ S  +  +  SGS D T R+WD
Sbjct: 8   KGHTGPVTSVAFS-PDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 5/133 (3%)

Query: 153 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI-TTGLRTSVFGG--EFQSGHTADV 209
           +L G +G +    + P +   L T+S D T + W I   GL  ++       Q GHT  V
Sbjct: 70  ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKV 128

Query: 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 269
             VS   S   +  S   D    +WD     +AV     H   + ++++  DG+   T S
Sbjct: 129 GIVSFHPSAMNVLASAGADMVVNVWDVE-RGKAVEVIKCHSDQITSLEWNLDGSLLCTTS 187

Query: 270 DDGTCRLFDIRTG 282
            D    + D R G
Sbjct: 188 KDKKLNIIDPRDG 200

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 235
            GHT  V SV+ S  + +   SGS D T +LWD
Sbjct: 9   KGHTGPVTSVAFS-PDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 152 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187
           R L GH G V+   + PD    L + S D T  +WD
Sbjct: 5   RTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 152 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187
           + L GH G V+   + PD   +L + S D T  LWD
Sbjct: 6   KTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	389
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG2096	420	consensus WD40 repeat protein [General function pr	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0308	735	consensus Conserved WD40 repeat-containing protein	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0269	839	consensus WD40 repeat-containing protein [Function	100.0
KOG0301	745	consensus Phospholipase A2-activating protein (con	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG2055	514	consensus WD40 repeat protein [General function pr	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG4283	397	consensus Transcription-coupled repair protein CSA	100.0
KOG0639	705	consensus Transducin-like enhancer of split protei	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.98
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.98
KOG0289	506	consensus mRNA splicing factor [General function p	99.98
KOG0641	350	consensus WD40 repeat protein [General function pr	99.98
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.98
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.98
KOG1274	933	consensus WD40 repeat protein [General function pr	99.98
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.98
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.97
KOG4328	498	consensus WD40 protein [Function unknown]	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG1273	405	consensus WD40 repeat protein [General function pr	99.97
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG2048	691	consensus WD40 repeat protein [General function pr	99.97
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.97
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.97
KOG1274	933	consensus WD40 repeat protein [General function pr	99.97
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG2048	691	consensus WD40 repeat protein [General function pr	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.95
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.95
KOG1273	405	consensus WD40 repeat protein [General function pr	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.95
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.95
KOG1188	376	consensus WD40 repeat protein [General function pr	99.94
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.94
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.94
KOG1310	758	consensus WD40 repeat protein [General function pr	99.94
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.94
KOG4227	609	consensus WD40 repeat protein [General function pr	99.94
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.93
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.93
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.93
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.93
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.92
COG2319	466	FOG: WD40 repeat [General function prediction only	99.92
KOG1334	559	consensus WD40 repeat protein [General function pr	99.92
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.92
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.91
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.91
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.91
COG2319	466	FOG: WD40 repeat [General function prediction only	99.9
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.9
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.9
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.9
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.9
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.9
KOG0649	325	consensus WD40 repeat protein [General function pr	99.9
PRK11028	330	6-phosphogluconolactonase; Provisional	99.9
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.9
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.9
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.9
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.89
KOG1963	792	consensus WD40 repeat protein [General function pr	99.89
KOG1188	376	consensus WD40 repeat protein [General function pr	99.88
KOG0649	325	consensus WD40 repeat protein [General function pr	99.88
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.88
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.87
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.87
KOG1963	792	consensus WD40 repeat protein [General function pr	99.87
PRK11028	330	6-phosphogluconolactonase; Provisional	99.86
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.86
PRK01742	429	tolB translocation protein TolB; Provisional	99.86
KOG2139	445	consensus WD40 repeat protein [General function pr	99.85
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.85
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.85
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.85
KOG4227	609	consensus WD40 repeat protein [General function pr	99.84
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.84
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.84
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.84
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.83
KOG2321	703	consensus WD40 repeat protein [General function pr	99.82
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.82
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.82
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.82
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.82
KOG1310	758	consensus WD40 repeat protein [General function pr	99.81
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.81
PRK03629	429	tolB translocation protein TolB; Provisional	99.8
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.8
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.8
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.79
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.79
PRK01742	429	tolB translocation protein TolB; Provisional	99.78
PRK04922	433	tolB translocation protein TolB; Provisional	99.78
PRK02889	427	tolB translocation protein TolB; Provisional	99.78
PRK05137	435	tolB translocation protein TolB; Provisional	99.76
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.76
KOG2139	445	consensus WD40 repeat protein [General function pr	99.75
KOG1334	559	consensus WD40 repeat protein [General function pr	99.75
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.74
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.74
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.74
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.73
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.73
KOG2315	566	consensus Predicted translation initiation factor	99.73
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.72
PRK04922	433	tolB translocation protein TolB; Provisional	99.71
PRK05137	435	tolB translocation protein TolB; Provisional	99.7
PRK03629	429	tolB translocation protein TolB; Provisional	99.7
KOG2321	703	consensus WD40 repeat protein [General function pr	99.69
PRK02889	427	tolB translocation protein TolB; Provisional	99.68
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.68
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.68
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.68
PRK04792	448	tolB translocation protein TolB; Provisional	99.67
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.66
KOG2314	698	consensus Translation initiation factor 3, subunit	99.66
PRK00178	430	tolB translocation protein TolB; Provisional	99.65
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.64
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.63
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.63
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.61
KOG4547	541	consensus WD40 repeat-containing protein [General	99.61
PRK01029	428	tolB translocation protein TolB; Provisional	99.61
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.6
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.6
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.59
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.59
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.58
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.58
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.58
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.57
KOG4547	541	consensus WD40 repeat-containing protein [General	99.57
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.57
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.55
PRK04792	448	tolB translocation protein TolB; Provisional	99.54
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.54
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.53
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.52
KOG2315	566	consensus Predicted translation initiation factor	99.52
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.52
PRK00178	430	tolB translocation protein TolB; Provisional	99.52
PRK01029	428	tolB translocation protein TolB; Provisional	99.52
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.51
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.51
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.5
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.49
COG4946	668	Uncharacterized protein related to the periplasmic	99.45
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.45
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.44
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.44
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.42
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.41
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.4
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.39
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.37
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.36
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.35
COG4946	668	Uncharacterized protein related to the periplasmic	99.32
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.32
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.32
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.31
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.31
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.3
KOG2314	698	consensus Translation initiation factor 3, subunit	99.3
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.29
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.29
KOG2695	425	consensus WD40 repeat protein [General function pr	99.29
PRK04043	419	tolB translocation protein TolB; Provisional	99.28
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.27
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.25
PRK04043	419	tolB translocation protein TolB; Provisional	99.25
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.24
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.22
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.2
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.19
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.19
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.19
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.18
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.13
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.12
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.1
KOG2695	425	consensus WD40 repeat protein [General function pr	99.1
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.09
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.08
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.08
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	99.05
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	99.03
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.0
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.99
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.97
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.97
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.95
KOG3621	726	consensus WD40 repeat-containing protein [General	98.9
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.9
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.9
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.89
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.88
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.87
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.87
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.81
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.79
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.78
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.77
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.76
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.76
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.73
PRK02888	635	nitrous-oxide reductase; Validated	98.73
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.7
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.7
COG3391	381	Uncharacterized conserved protein [Function unknow	98.67
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.67
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.66
PRK02888	635	nitrous-oxide reductase; Validated	98.55
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.55
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.53
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.52
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.52
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.5
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.5
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.46
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.45
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.43
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.43
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.43
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.42
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.41
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.38
COG3391	381	Uncharacterized conserved protein [Function unknow	98.36
KOG3621	726	consensus WD40 repeat-containing protein [General	98.35
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.33
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.32
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.29
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.21
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.21
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.17
KOG2444	238	consensus WD40 repeat protein [General function pr	98.16
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.16
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.12
KOG2395	644	consensus Protein involved in vacuole import and d	98.09
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.08
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	98.02
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.0
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.97
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.92
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.91
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.91
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.89
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.87
PHA02713	557	hypothetical protein; Provisional	97.85
PRK13616	591	lipoprotein LpqB; Provisional	97.83
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.82
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.8
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.77
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.77
KOG2395	644	consensus Protein involved in vacuole import and d	97.76
PHA02713	557	hypothetical protein; Provisional	97.74
KOG2444	238	consensus WD40 repeat protein [General function pr	97.73
PRK13616	591	lipoprotein LpqB; Provisional	97.72
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.67
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.55
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.54
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.52
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.51
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.51
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.49
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.47
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.45
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.4
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.4
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.37
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.33
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.33
COG5276	370	Uncharacterized conserved protein [Function unknow	97.24
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.19
PHA03098	534	kelch-like protein; Provisional	97.12
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.1
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.07
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	97.0
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.0
PHA03098	534	kelch-like protein; Provisional	96.95
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.93
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.93
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.9
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.88
PHA02790	480	Kelch-like protein; Provisional	96.87
PHA02790	480	Kelch-like protein; Provisional	96.78
KOG2247	615	consensus WD40 repeat-containing protein [General	96.73
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.64
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.64
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.61
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.58
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.55
COG3292	671	Predicted periplasmic ligand-binding sensor domain	96.53
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.43
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.42
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.39
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.33
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.32
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.3
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.28
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.28
COG5167	776	VID27 Protein involved in vacuole import and degra	96.14
COG5276	370	Uncharacterized conserved protein [Function unknow	96.12
COG5167	776	VID27 Protein involved in vacuole import and degra	96.04
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.02
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.0
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.98
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.93
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.88
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.68
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.67
PRK13684	334	Ycf48-like protein; Provisional	95.67
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.62
PRK10115	686	protease 2; Provisional	95.61
KOG3616	1636	consensus Selective LIM binding factor [Transcript	95.57
TIGR01063	800	gyrA DNA gyrase, A subunit. This model describes t	95.49
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.25
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	95.15
PRK05560	805	DNA gyrase subunit A; Validated	95.08
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.02
PRK10115	686	protease 2; Provisional	94.97
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.95
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	94.88
PRK13684	334	Ycf48-like protein; Provisional	94.81
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.71
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.57
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	94.51
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	94.51
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	94.5
COG4590	733	ABC-type uncharacterized transport system, permeas	94.4
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.32
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.29
KOG2247	615	consensus WD40 repeat-containing protein [General	94.29
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.28
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.21
PRK13979	957	DNA topoisomerase IV subunit A; Provisional	94.08
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	94.05
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.85
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	93.85
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.84
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.56
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	93.32
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.02
COG5509	65	Uncharacterized small protein containing a coiled-	92.94
PLN02153	341	epithiospecifier protein	92.86
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	92.77
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	92.52
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.45
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.35
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.25
PLN02193	470	nitrile-specifier protein	92.19
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.17
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	91.95
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	91.81
PLN02193	470	nitrile-specifier protein	91.81
TIGR01062	735	parC_Gneg DNA topoisomerase IV, A subunit, proteob	91.68
KOG3616	1636	consensus Selective LIM binding factor [Transcript	91.48
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	91.43
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.41
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	91.32
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.82
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	90.79
PF12768	281	Rax2: Cortical protein marker for cell polarity	90.76
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	90.65
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	90.56
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	90.55
PRK00736	68	hypothetical protein; Provisional	90.53
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	90.32
COG4590	733	ABC-type uncharacterized transport system, permeas	90.15
PLN02153	341	epithiospecifier protein	90.14
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	90.08

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.8e-62  Score=370.64  Aligned_cols=340  Identities=51%  Similarity=0.967  Sum_probs=318.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCC
Q 016458           10 ERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDG   89 (389)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg   89 (389)
                      ++++++++|+++|++++++.|.++.+..+..........+.    ..++..++|+||.+.|.++.|++|.++|++++.||
T Consensus         2 ~~~~~l~~Eae~L~~qi~~~r~~~~D~~l~q~a~~~~~~~~----i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDG   77 (343)
T KOG0286|consen    2 EELEQLRQEAEQLKNQIRDARKKLNDVTLAQIAERLESVGR----IQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDG   77 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhcccccee----eeeeeEEEecccccceeeeEecCCcCeEEeeccCC
Confidence            67889999999999999999999999999988887777666    67788899999999999999999999999999999


Q ss_pred             cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC
Q 016458           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD  169 (389)
Q Consensus        90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  169 (389)
                      .+.|||.-+...++.++.+..+|..++|+|.|+++|+|+-|+...||++.... .....+..+.+.+|.+.+.|+.|.++
T Consensus        78 klIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d-~~g~~~v~r~l~gHtgylScC~f~dD  156 (343)
T KOG0286|consen   78 KLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRD-AEGNVRVSRELAGHTGYLSCCRFLDD  156 (343)
T ss_pred             eEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccc-ccccceeeeeecCccceeEEEEEcCC
Confidence            99999999999999999999999999999999999999999999999999643 23556678889999999999999995


Q ss_pred             CCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee
Q 016458          170 EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH  249 (389)
Q Consensus       170 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  249 (389)
                        ..|++++.|.+..+||+++++....|     .+|.+.|.+++++|.+++.+++|+.|+..++||+|.+ ...+.|.+|
T Consensus       157 --~~ilT~SGD~TCalWDie~g~~~~~f-----~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~gh  228 (343)
T KOG0286|consen  157 --NHILTGSGDMTCALWDIETGQQTQVF-----HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGH  228 (343)
T ss_pred             --CceEecCCCceEEEEEcccceEEEEe-----cCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeeccc
Confidence              47999999999999999999999999     8999999999999999999999999999999999998 899999999


Q ss_pred             ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458          250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (389)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (389)
                      +..|++++|.|+|.-+++|+.|++.++||++..+.+..+..   .....+|++++||..|++|++|..|..+.+||.-.+
T Consensus       229 esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~---~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~  305 (343)
T KOG0286|consen  229 ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH---DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG  305 (343)
T ss_pred             ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc---CcccCCceeEEEcccccEEEeeecCCceeEeecccc
Confidence            99999999999999999999999999999999998888764   344557999999999999999999999999999999


Q ss_pred             eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          330 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      +....+    .+|++.|+|+..+|||.-+++|++|..++|
T Consensus       306 e~vg~L----~GHeNRvScl~~s~DG~av~TgSWDs~lri  341 (343)
T KOG0286|consen  306 ERVGVL----AGHENRVSCLGVSPDGMAVATGSWDSTLRI  341 (343)
T ss_pred             ceEEEe----eccCCeeEEEEECCCCcEEEecchhHheee
Confidence            999999    899999999999999999999999999999

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.1e-56  Score=348.80  Aligned_cols=299  Identities=27%  Similarity=0.462  Sum_probs=271.2

Q ss_pred             ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (389)
                      .+|...+.||.++|.|++|+|+|..|++|+.|.++|+||+.+..+..+.++|...|.|++|+|||+.||+|+.||.|++|
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW  184 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence            47778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeC----CCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD----EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  212 (389)
                      |..++..      ....+.+|...|++++|.|-    ...+|++++.||.|+|||+..+.++..+     .+|..+|+|+
T Consensus       185 dpktg~~------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-----sgHT~~VTCv  253 (480)
T KOG0271|consen  185 DPKTGQQ------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-----SGHTASVTCV  253 (480)
T ss_pred             cCCCCCc------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-----ccCccceEEE
Confidence            9988652      56788999999999999873    1258999999999999999999999998     8999999999


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-----------CC-------------------
Q 016458          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-----------DG-------------------  262 (389)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~-------------------  262 (389)
                      .|-  ...++++|+.|++|++|+...+ ...+.+.+|...|+.++.+.           .+                   
T Consensus       254 rwG--G~gliySgS~DrtIkvw~a~dG-~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~  330 (480)
T KOG0271|consen  254 RWG--GEGLIYSGSQDRTIKVWRALDG-KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA  330 (480)
T ss_pred             EEc--CCceEEecCCCceEEEEEccch-hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence            997  5679999999999999999886 88999999999999998872           22                   


Q ss_pred             ------CEEEEEecCCeEEEEECCCCc-eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458          263 ------NRFGTGSDDGTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       263 ------~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (389)
                            ..|++|+.|.++.+|+-...+ ++.....+.     .-|+.+.||||++++|+++-|..|++||..+|+.+.++
T Consensus       331 ~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq-----~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf  405 (480)
T KOG0271|consen  331 VLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQ-----ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF  405 (480)
T ss_pred             hhccCcceeEEecCCceEEEecccccccchhhhhchh-----hheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh
Confidence                  359999999999999976544 444443333     34999999999999999999999999999999999999


Q ss_pred             cCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          336 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       336 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                          .+|-.+|+.++|+.|.++|++|+.|.++++    |++.+.++.
T Consensus       406 ----RGHv~~VYqvawsaDsRLlVS~SkDsTLKv----w~V~tkKl~  444 (480)
T KOG0271|consen  406 ----RGHVAAVYQVAWSADSRLLVSGSKDSTLKV----WDVRTKKLK  444 (480)
T ss_pred             ----hhccceeEEEEeccCccEEEEcCCCceEEE----EEeeeeeec
Confidence                899999999999999999999999999999    999998775

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.6e-55  Score=342.88  Aligned_cols=304  Identities=27%  Similarity=0.460  Sum_probs=278.7

Q ss_pred             CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee-EEEeeCCCcEEEEEECC----
Q 016458           45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-HAIKLPCAWVMTCAFSP----  119 (389)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~~~v~~~~~~~----  119 (389)
                      .+.....|++..-.+.++.++|..-|.|++|+|||+.||+|+.||+|++||..+++++ ..+.+|...|++++|.|    
T Consensus       135 GD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~  214 (480)
T KOG0271|consen  135 GDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLV  214 (480)
T ss_pred             CCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccC
Confidence            3445568999999999999999999999999999999999999999999999988765 56889999999999976    


Q ss_pred             -CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec
Q 016458          120 -TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (389)
Q Consensus       120 -~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  198 (389)
                       ..++|++++.||.|+|||+..+.       +...+.+|+.+|+|+.|-.+|  ++++|+.|++|++|+...|.....+ 
T Consensus       215 p~~r~las~skDg~vrIWd~~~~~-------~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~l-  284 (480)
T KOG0271|consen  215 PPCRRLASSSKDGSVRIWDTKLGT-------CVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCREL-  284 (480)
T ss_pred             CCccceecccCCCCEEEEEccCce-------EEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhh-
Confidence             56899999999999999998866       788899999999999998754  8999999999999999999998888 


Q ss_pred             CcccCCCCCCeeEEEeeC-----------------------------------CCCcEEEEeeCCCceEEEeCCCCCcce
Q 016458          199 GEFQSGHTADVLSVSISG-----------------------------------SNSRMFVSGSCDSTARLWDTRVASRAV  243 (389)
Q Consensus       199 ~~~~~~~~~~v~~~~~~~-----------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~  243 (389)
                          .+|...|+.++.+.                                   ..+..+++|+.|.++.+|+.....+++
T Consensus       285 ----kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi  360 (480)
T KOG0271|consen  285 ----KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI  360 (480)
T ss_pred             ----cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccch
Confidence                78999999988771                                   123469999999999999998887899


Q ss_pred             eEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEE
Q 016458          244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV  323 (389)
Q Consensus       244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (389)
                      ..+.+|..-|+.+.||||++++++++.|..|++||.++|+.+..+..+..     .|..++|+.|.++|++|+.|.++++
T Consensus       361 ~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~-----~VYqvawsaDsRLlVS~SkDsTLKv  435 (480)
T KOG0271|consen  361 TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA-----AVYQVAWSADSRLLVSGSKDSTLKV  435 (480)
T ss_pred             hhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc-----eeEEEEeccCccEEEEcCCCceEEE
Confidence            99999999999999999999999999999999999999999998866554     4999999999999999999999999


Q ss_pred             EEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458          324 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR  375 (389)
Q Consensus       324 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~  375 (389)
                      |++++.+....+    .+|...|.++.|+|||..+++|+.|..+++    |.
T Consensus       436 w~V~tkKl~~DL----pGh~DEVf~vDwspDG~rV~sggkdkv~~l----w~  479 (480)
T KOG0271|consen  436 WDVRTKKLKQDL----PGHADEVFAVDWSPDGQRVASGGKDKVLRL----WR  479 (480)
T ss_pred             EEeeeeeecccC----CCCCceEEEEEecCCCceeecCCCceEEEe----ec
Confidence            999999999888    899999999999999999999999999999    85

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6e-54  Score=339.92  Aligned_cols=285  Identities=26%  Similarity=0.473  Sum_probs=268.8

Q ss_pred             cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCC--CcEEEEecCCCcEEEEeCCC
Q 016458           63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT--GQSVACGGLDSVCSIFNLNS  140 (389)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vw~~~~  140 (389)
                      -.|-+.+|..+.|+++++.|+||+.+|.+++|+..+...+.++.+|.+.|.++.|+|.  +..+++|+.||++++|++++
T Consensus       171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ  250 (459)
T ss_pred             hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence            3467889999999999999999999999999999999999999999999999999996  67899999999999999987


Q ss_pred             CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (389)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (389)
                      ..       ....+.+|...|..++|+|+| ++|++++.|.+-++||++++..+...     .+|...|.+++|+| ++.
T Consensus       251 e~-------~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~Q-----EGHs~~v~~iaf~~-DGS  316 (459)
T KOG0272|consen  251 ET-------PLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQ-----EGHSKGVFSIAFQP-DGS  316 (459)
T ss_pred             Cc-------chhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhh-----cccccccceeEecC-CCc
Confidence            54       678899999999999999998 79999999999999999999887776     89999999999999 999


Q ss_pred             EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe
Q 016458          221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV  300 (389)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i  300 (389)
                      ++++|+.|..-+|||++++ .++..+.+|..+|.+++|+|+|..|++|+.|++++|||++....+..++.+...     |
T Consensus       317 L~~tGGlD~~~RvWDlRtg-r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl-----V  390 (459)
T KOG0272|consen  317 LAATGGLDSLGRVWDLRTG-RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL-----V  390 (459)
T ss_pred             eeeccCccchhheeecccC-cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch-----h
Confidence            9999999999999999999 889999999999999999999999999999999999999998888877665554     9


Q ss_pred             eEEEeCC-CCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458          301 TSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR  375 (389)
Q Consensus       301 ~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~  375 (389)
                      +.+.|+| .|.+|++++.|++++||...++.++..+    .+|++.|.++.+++|++++++++.|.++++    |.
T Consensus       391 S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL----aGHe~kV~s~Dis~d~~~i~t~s~DRT~KL----W~  458 (459)
T KOG0272|consen  391 SQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL----AGHEGKVISLDISPDSQAIATSSFDRTIKL----WR  458 (459)
T ss_pred             hheEecccCCeEEEEcccCcceeeecCCCcccchhh----cCCccceEEEEeccCCceEEEeccCceeee----cc
Confidence            9999998 7889999999999999999999999999    899999999999999999999999999999    95

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-47  Score=285.97  Aligned_cols=299  Identities=28%  Similarity=0.406  Sum_probs=259.3

Q ss_pred             CcceeeeecccccCcEEEEEEcCC-CCeEEEEecCCcEEEEeCC-----CCCeeEEEeeCCCcEEEEEECCCCcEEEEec
Q 016458           55 TDLVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNAL-----TSQKTHAIKLPCAWVMTCAFSPTGQSVACGG  128 (389)
Q Consensus        55 ~~~~~~~~l~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iw~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  128 (389)
                      ..+....+|++|++.|+.++..+. .+.+++++.|.++.+|++.     .|..++.+.+|...|..+..+++|++.++++
T Consensus         3 e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s   82 (315)
T KOG0279|consen    3 EQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS   82 (315)
T ss_pred             hhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc
Confidence            345677799999999999999986 4588999999999999764     4677899999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCC
Q 016458          129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD  208 (389)
Q Consensus       129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  208 (389)
                      .|+++++||+.+++       ..+.+.+|...|.+++|++++ ..+++|+.|.+|++||...........    ..+.+-
T Consensus        83 wD~~lrlWDl~~g~-------~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~----~~~~~W  150 (315)
T KOG0279|consen   83 WDGTLRLWDLATGE-------STRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHE----DSHREW  150 (315)
T ss_pred             ccceEEEEEecCCc-------EEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEec----CCCcCc
Confidence            99999999999865       788999999999999999997 789999999999999998766555441    223788


Q ss_pred             eeEEEeeCCC-CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeE
Q 016458          209 VLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV  287 (389)
Q Consensus       209 v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  287 (389)
                      |.++.|+|.. ..+|++++.|++|++||+++. +....+.+|.+.++.+++||||.++++|+.||.+.+||++.++.+..
T Consensus       151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys  229 (315)
T KOG0279|consen  151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS  229 (315)
T ss_pred             EEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe
Confidence            9999999953 779999999999999999987 78888999999999999999999999999999999999999999777


Q ss_pred             eeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCC-----CCCeeEEEECCCCCeEEeee
Q 016458          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH-----EGRITCLGLSADGSALCTGS  362 (389)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~  362 (389)
                      +....      .|.+++|+|+...|+.+... .|+|||+.++..+..+..-..+.     .....+++|++||..|++|-
T Consensus       230 l~a~~------~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~  302 (315)
T KOG0279|consen  230 LEAFD------IVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY  302 (315)
T ss_pred             ccCCC------eEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence            65433      49999999998888777554 69999999998887775322222     33457789999999999999


Q ss_pred             CCCeeEEeecceecc
Q 016458          363 WDTNLKVNLGFWRVQ  377 (389)
Q Consensus       363 ~dg~i~i~~~~W~~~  377 (389)
                      .|+.|++    |.+.
T Consensus       303 td~~irv----~qv~  313 (315)
T KOG0279|consen  303 TDNVIRV----WQVA  313 (315)
T ss_pred             cCCcEEE----EEee
Confidence            9999999    9875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.1e-48  Score=310.05  Aligned_cols=263  Identities=24%  Similarity=0.376  Sum_probs=246.5

Q ss_pred             ccCCCCCcccCCCcceeeeecccccCcEEEEEEcCC--CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCC
Q 016458           43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSE--RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT  120 (389)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~  120 (389)
                      .+-.+.++.|..++.....+|.||.+.|.++.|+|.  +..||||+.||++++|++.+..++..+.+|...|..++|+|+
T Consensus       193 ~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPs  272 (459)
T KOG0272|consen  193 GSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPS  272 (459)
T ss_pred             eecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCC
Confidence            334566778999999999999999999999999996  568999999999999999999999999999999999999999


Q ss_pred             CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc
Q 016458          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE  200 (389)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  200 (389)
                      |++|++++.|.+-++||+.++.       ......+|...|.+++|.++| .++++|+.|..-+|||++++.++..+   
T Consensus       273 G~~L~TasfD~tWRlWD~~tk~-------ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L---  341 (459)
T KOG0272|consen  273 GKFLGTASFDSTWRLWDLETKS-------ELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFL---  341 (459)
T ss_pred             Cceeeecccccchhhcccccch-------hhHhhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEe---
Confidence            9999999999999999999865       455678999999999999998 79999999999999999999999999   


Q ss_pred             ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEEC
Q 016458          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDI  279 (389)
Q Consensus       201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~  279 (389)
                        .+|..+|.+++|+| ++..+++|+.|++++|||++.. ..+..+.+|.+-|+.+.|+| .|.+|++++.|+++++|..
T Consensus       342 --~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~  417 (459)
T KOG0272|consen  342 --AGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST  417 (459)
T ss_pred             --cccccceeeEeECC-CceEEeecCCCCcEEEeeeccc-ccceecccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence              79999999999999 9999999999999999999988 67899999999999999999 8899999999999999999


Q ss_pred             CCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458          280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (389)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (389)
                      ++..++..+..+...     |.++.+++++.++++++.|.++++|.
T Consensus       418 ~~~~~~ksLaGHe~k-----V~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  418 RTWSPLKSLAGHEGK-----VISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             CCcccchhhcCCccc-----eEEEEeccCCceEEEeccCceeeecc
Confidence            999999998776665     99999999999999999999999995

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-46  Score=293.41  Aligned_cols=334  Identities=25%  Similarity=0.405  Sum_probs=291.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEE
Q 016458            4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIV   83 (389)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~   83 (389)
                      ++.++|+.+..++..++...       .    .-.+..+......|..|-|.+ .....+.+|..+|+.+-|+|+-..++
T Consensus        57 Sv~rlqKki~~Les~l~~~~-------~----el~~g~pt~~~~~~~~wipRp-~l~~~l~g~r~~vt~v~~hp~~~~v~  124 (406)
T KOG0295|consen   57 SVDRLQKKIRELESKLDETG-------D----ELIAGDPTGSKRTPALWIPRP-NLVQKLAGHRSSVTRVIFHPSEALVV  124 (406)
T ss_pred             ccchhHHHHHHHHhhhcccc-------c----ccccCCCCcCccChhhcCCCC-CchhhhhccccceeeeeeccCceEEE
Confidence            34455555555544444333       2    223334444455666676654 44557788999999999999999999


Q ss_pred             EEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEE
Q 016458           84 SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC  163 (389)
Q Consensus        84 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~  163 (389)
                      +++.|++|++||..+++....+++|...+..++|+..|+++++++.|=.+.+||+..      ...+.+.+.+|...|.+
T Consensus       125 ~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~------~~~c~ks~~gh~h~vS~  198 (406)
T KOG0295|consen  125 SASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT------FFRCIKSLIGHEHGVSS  198 (406)
T ss_pred             EecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHH------HHHHHHHhcCcccceee
Confidence            999999999999999999999999999999999999999999999999999999986      23467788899999999


Q ss_pred             EEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcce
Q 016458          164 CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV  243 (389)
Q Consensus       164 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  243 (389)
                      +.|.|.| .++++++.|.+|+.|++.++.++..+     .+|..-|..+..+. ++.++++++.|.+|++|-+.+. .+.
T Consensus       199 V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~-----~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~-~~k  270 (406)
T KOG0295|consen  199 VFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTF-----PGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATK-QCK  270 (406)
T ss_pred             EEEEecC-CeeeecccccceeEEecccceeEEec-----cCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccc-hhh
Confidence            9999998 78999999999999999999999999     78999999999998 9999999999999999999987 788


Q ss_pred             eEEeeeccceEEEEEecC---------------CCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC
Q 016458          244 RTFHGHEGDVNTVKFFPD---------------GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS  308 (389)
Q Consensus       244 ~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  308 (389)
                      ..++.|+.+|.+++|-|.               ++++.+++.|++|++||+.++.++.++..+.     .+|..++|+|.
T Consensus       271 ~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd-----nwVr~~af~p~  345 (406)
T KOG0295|consen  271 AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD-----NWVRGVAFSPG  345 (406)
T ss_pred             hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccc-----ceeeeeEEcCC
Confidence            889999999999999773               3589999999999999999999999886644     36999999999


Q ss_pred             CCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceec
Q 016458          309 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRV  376 (389)
Q Consensus       309 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~  376 (389)
                      |+||+++.+|+++++||+++++....+    ..|..-|+++.|+.+..++++|+-|..+++    |.-
T Consensus       346 Gkyi~ScaDDktlrvwdl~~~~cmk~~----~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv----wEc  405 (406)
T KOG0295|consen  346 GKYILSCADDKTLRVWDLKNLQCMKTL----EAHEHFVTSLDFHKTAPYVVTGSVDQTVKV----WEC  405 (406)
T ss_pred             CeEEEEEecCCcEEEEEeccceeeecc----CCCcceeEEEecCCCCceEEeccccceeee----eec
Confidence            999999999999999999999999999    799999999999999999999999999999    964

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.5e-45  Score=270.43  Aligned_cols=283  Identities=22%  Similarity=0.343  Sum_probs=243.0

Q ss_pred             eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccc
Q 016458           81 RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY  160 (389)
Q Consensus        81 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  160 (389)
                      +|++++.|.+||+|...+|.+..+++...+.|+.+...|+++.||+++. ..|++||+++..     .....++.+|...
T Consensus        12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n-----p~Pv~t~e~h~kN   85 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN-----PNPVATFEGHTKN   85 (311)
T ss_pred             EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC-----CCceeEEeccCCc
Confidence            7999999999999999999999999999999999999999999999875 579999999854     2267889999999


Q ss_pred             eEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC
Q 016458          161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS  240 (389)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  240 (389)
                      |+.+.|..+| +.+++|+.||+++|||++...+.+.+      .+..+|+++..+| +...|++|..+|.|++||+... 
T Consensus        86 VtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~------~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~-  156 (311)
T KOG0315|consen   86 VTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNY------QHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGEN-  156 (311)
T ss_pred             eEEEEEeecC-eEEEecCCCceEEEEeccCcccchhc------cCCCCcceEEecC-CcceEEeecCCCcEEEEEccCC-
Confidence            9999999998 89999999999999999997776665      6779999999999 8888999999999999999976 


Q ss_pred             cceeE-EeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeec-cCCCCCCCCeeEEEeCCCCCEEEEEecC
Q 016458          241 RAVRT-FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ-QHGENEIPHVTSIAFSISGRLLFAGYSN  318 (389)
Q Consensus       241 ~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (389)
                      ..... +.....+|.++...|||.+++.+...|..++|++........+.. .....+...+..+.+|||+++|++++.|
T Consensus       157 ~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd  236 (311)
T KOG0315|consen  157 SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD  236 (311)
T ss_pred             ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence            33333 334456899999999999999999999999999977543332221 1223445569999999999999999999


Q ss_pred             CcEEEEEcccc-eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC-ccc
Q 016458          319 GDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP-WGV  386 (389)
Q Consensus       319 g~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~-~~~  386 (389)
                      .+++||+.++. +....+    .+|..-+...+||.||+||+||+.|+.+++    |++..|+... |.+
T Consensus       237 ktv~iwn~~~~~kle~~l----~gh~rWvWdc~FS~dg~YlvTassd~~~rl----W~~~~~k~v~qy~g  298 (311)
T KOG0315|consen  237 KTVKIWNTDDFFKLELVL----TGHQRWVWDCAFSADGEYLVTASSDHTARL----WDLSAGKEVRQYQG  298 (311)
T ss_pred             ceEEEEecCCceeeEEEe----ecCCceEEeeeeccCccEEEecCCCCceee----cccccCceeeecCC
Confidence            99999999887 444555    789999999999999999999999999999    9999997543 443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=9.1e-45  Score=275.82  Aligned_cols=292  Identities=21%  Similarity=0.346  Sum_probs=259.7

Q ss_pred             eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeC-CCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNA-LTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (389)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (389)
                      .+...+.||.+.|+.+.|+|+|.+||+|+.|..|.+|+. ..-+....+++|.+.|+.+.|.++++.+++++.|.+++.|
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            344568899999999999999999999999999999995 4456677788999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  216 (389)
                      |.++++       .....++|...|+.+.-+.-|..++.+++.||++++||+++...+..+      ...-.++++.|..
T Consensus       118 D~~tG~-------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~------~~kyqltAv~f~d  184 (338)
T KOG0265|consen  118 DAETGK-------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF------ENKYQLTAVGFKD  184 (338)
T ss_pred             ecccce-------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc------ccceeEEEEEecc
Confidence            999977       678889999999999977778888999999999999999998888876      4566799999997


Q ss_pred             CCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce----eeEeeccC
Q 016458          217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ----LQVYYQQH  292 (389)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~  292 (389)
                       ....+.+|+-|+.|++||++.. .....+.+|..+|+.+..+|+|.++.+-+.|.++++||++...+    +..+.. +
T Consensus       185 -~s~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g-~  261 (338)
T KOG0265|consen  185 -TSDQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG-H  261 (338)
T ss_pred             -cccceeeccccCceeeeccccC-cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec-c
Confidence             7788899999999999999987 88999999999999999999999999999999999999986432    333322 2


Q ss_pred             CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      ..+-......++|+|+++.+.+|+.|..+++||......+..+    .+|.+.|.+++|+|...+|.+++.|.+|.+
T Consensus       262 ~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl----pGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  262 IHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL----PGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             hhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc----CCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            2223334677899999999999999999999999998999998    899999999999999999999999999987

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.5e-46  Score=295.56  Aligned_cols=285  Identities=29%  Similarity=0.480  Sum_probs=255.7

Q ss_pred             cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCC
Q 016458           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK  144 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  144 (389)
                      .-+-+|..+.|.|+|+.|++|+..|.+.+|+...-.....++.|..+|+++.|++++.++++|+.+|.|++|+.....  
T Consensus        94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--  171 (464)
T KOG0284|consen   94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--  171 (464)
T ss_pred             ccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--
Confidence            344589999999999999999999999999986666666678899999999999999999999999999999987533  


Q ss_pred             CCCCcceeeeccc-ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEE
Q 016458          145 DGNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV  223 (389)
Q Consensus       145 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  223 (389)
                            .+.+..| ...|.+++|+|.. ..|++++.||+|+|||....+....+     .+|.-.|.+++|+| ...+++
T Consensus       172 ------Vk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL-----~GHgwdVksvdWHP-~kgLia  238 (464)
T KOG0284|consen  172 ------VKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVL-----RGHGWDVKSVDWHP-TKGLIA  238 (464)
T ss_pred             ------hHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhhee-----ccCCCCcceeccCC-ccceeE
Confidence                  3444444 5899999999964 78999999999999999998888888     79999999999999 788999


Q ss_pred             EeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEE
Q 016458          224 SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI  303 (389)
Q Consensus       224 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  303 (389)
                      +++.|..|++||.+++ .++.++..|...|..+.|+|++++|++++.|..+++||+++.+.+..+..+...     ++++
T Consensus       239 sgskDnlVKlWDprSg-~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd-----v~~~  312 (464)
T KOG0284|consen  239 SGSKDNLVKLWDPRSG-SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD-----VTSL  312 (464)
T ss_pred             EccCCceeEeecCCCc-chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh-----heee
Confidence            9999999999999998 899999999999999999999999999999999999999988888888766554     9999


Q ss_pred             EeCCCC-CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          304 AFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       304 ~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      .|+|-. .+|.+|+.||.|..|.+...+++..+.   .+|...|.+++|+|-|.+|++|+.|.++++    |.-.
T Consensus       313 ~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~---~AHd~~iwsl~~hPlGhil~tgsnd~t~rf----w~r~  380 (464)
T KOG0284|consen  313 TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP---PAHDGEIWSLAYHPLGHILATGSNDRTVRF----WTRN  380 (464)
T ss_pred             ccccccccceeeccCCCceEEEeccccccccCCC---cccccceeeeeccccceeEeecCCCcceee----eccC
Confidence            999954 588889999999999998667766665   799999999999999999999999999999    9754

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.5e-44  Score=279.04  Aligned_cols=298  Identities=26%  Similarity=0.374  Sum_probs=266.5

Q ss_pred             cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEE
Q 016458           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI  135 (389)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  135 (389)
                      +.+..+.+.||.+-|.|+++.|.+.+|++|+.|++++|||+.+++...++.+|...|..+++++...|+++++.|+.|+.
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC  219 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC  219 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence            35778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (389)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  215 (389)
                      ||++.++       +++.+.+|-+.|.|++.+|.- ..|++|+.|.++++||+++...+..+     .+|..+|.++.+.
T Consensus       220 wDLe~nk-------vIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l-----~GH~~~V~~V~~~  286 (460)
T KOG0285|consen  220 WDLEYNK-------VIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVL-----SGHTNPVASVMCQ  286 (460)
T ss_pred             Eechhhh-------hHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEe-----cCCCCcceeEEee
Confidence            9999866       788899999999999999986 68999999999999999999999999     8999999999999


Q ss_pred             CCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCC
Q 016458          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN  295 (389)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  295 (389)
                      | -+..+++|+.|++|++||++.+ +....+..|...+.+++.+|....+++++.| .|+.|++..+..+..+..+..  
T Consensus       287 ~-~dpqvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--  361 (460)
T KOG0285|consen  287 P-TDPQVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--  361 (460)
T ss_pred             c-CCCceEEecCCceEEEeeeccC-ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--
Confidence            8 5567899999999999999998 7788888899999999999999999999887 699999999988877554443  


Q ss_pred             CCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCC----CCCCCeeEEEECCCCCeEEeeeCCCeeEEee
Q 016458          296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN----SHEGRITCLGLSADGSALCTGSWDTNLKVNL  371 (389)
Q Consensus       296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~  371 (389)
                         -|++++.+.|| ++++|+++|.+.+||.+++...........    ..+..|.+.+|+..|..|++|..|.+|++  
T Consensus       362 ---iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~--  435 (460)
T KOG0285|consen  362 ---IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKM--  435 (460)
T ss_pred             ---eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEE--
Confidence               38899988776 788899999999999998876665532211    23457999999999999999999999999  


Q ss_pred             cceecccC
Q 016458          372 GFWRVQEG  379 (389)
Q Consensus       372 ~~W~~~~~  379 (389)
                        |.-.+.
T Consensus       436 --~keDe~  441 (460)
T KOG0285|consen  436 --YKEDEH  441 (460)
T ss_pred             --Eecccc
Confidence              886644

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=8.4e-43  Score=261.46  Aligned_cols=294  Identities=21%  Similarity=0.364  Sum_probs=246.0

Q ss_pred             ceeeeecccccCcEEEEEEcCC-CCeEEEEecCCcEEEEeCCCCCe---eEEE-eeCCCcEEEEEECCCCcEEEEecCCC
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQK---THAI-KLPCAWVMTCAFSPTGQSVACGGLDS  131 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg  131 (389)
                      +...+.+++|+++|..++|+|- |..||+++.|+.|++|+...+..   ...+ .+|...|+.++|+|.|++|++++.|.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            4567889999999999999998 88999999999999999875332   2222 35788999999999999999999999


Q ss_pred             cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC---eeEEEecCcccCCCCCC
Q 016458          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG---LRTSVFGGEFQSGHTAD  208 (389)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~  208 (389)
                      ++.||.-..     ..+.+...+.+|...|.|++|+++| ++|++++.|..|-||.+..+   .+...+     ..|...
T Consensus        84 t~~Iw~k~~-----~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL-----~~HtqD  152 (312)
T KOG0645|consen   84 TVVIWKKED-----GEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVL-----QEHTQD  152 (312)
T ss_pred             eEEEeecCC-----CceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeee-----cccccc
Confidence            999998765     4566899999999999999999998 89999999999999999854   455666     789999


Q ss_pred             eeEEEeeCCCCcEEEEeeCCCceEEEeCCC--CCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceee
Q 016458          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRV--ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ  286 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  286 (389)
                      |..+.|+| ...+|++++.|.+|++|+-..  .-.++.++.+|.+.|.+++|+|.|..|++++.|++++||.+.+.-   
T Consensus       153 VK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---  228 (312)
T KOG0645|consen  153 VKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---  228 (312)
T ss_pred             ccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---
Confidence            99999999 888999999999999998662  236788999999999999999999999999999999999876321   


Q ss_pred             EeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce--EE-EeecCcCCCCCCCeeEEEECCC-CCeEEeee
Q 016458          287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--VV-LNLGSLQNSHEGRITCLGLSAD-GSALCTGS  362 (389)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~  362 (389)
                        .    ..+...+..+.|.  ...|++++.|+.|++|.-....  +. ..+......|...|++++|.|. ..+|++|+
T Consensus       229 --~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~  300 (312)
T KOG0645|consen  229 --S----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGG  300 (312)
T ss_pred             --c----hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecC
Confidence              1    1222348889997  4589999999999999865421  11 1111223679999999999994 77899999


Q ss_pred             CCCeeEEeecceecc
Q 016458          363 WDTNLKVNLGFWRVQ  377 (389)
Q Consensus       363 ~dg~i~i~~~~W~~~  377 (389)
                      .||.+++    |.+.
T Consensus       301 DDG~v~~----W~l~  311 (312)
T KOG0645|consen  301 DDGIVNF----WELE  311 (312)
T ss_pred             CCceEEE----EEec
Confidence            9999999    9875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.1e-43  Score=282.98  Aligned_cols=289  Identities=25%  Similarity=0.438  Sum_probs=254.9

Q ss_pred             cccCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCC----CeeEEEe----------eCCCcEEEEEECCCCcEEEEecC
Q 016458           65 GHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTS----QKTHAIK----------LPCAWVMTCAFSPTGQSVACGGL  129 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~----~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~  129 (389)
                      .|..+|.+.+|+|-.. .+++++.|-+.++|++...    .....++          .....|++++|+.+|..||+|..
T Consensus       176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~  255 (524)
T KOG0273|consen  176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE  255 (524)
T ss_pred             cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence            4999999999999665 8999999999999998641    1111111          12356999999999999999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCe
Q 016458          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV  209 (389)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  209 (389)
                      ||.+++|+....        ...++..|+++|.++.|+..| +++++++.|+++.+||..++.....+     ..|..+-
T Consensus       256 ~G~~riw~~~G~--------l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f-----~~~s~~~  321 (524)
T KOG0273|consen  256 DGEARIWNKDGN--------LISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQF-----EFHSAPA  321 (524)
T ss_pred             CcEEEEEecCch--------hhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEee-----eeccCCc
Confidence            999999998763        467888999999999999998 79999999999999999999999988     6677777


Q ss_pred             eEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEee
Q 016458          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (389)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (389)
                      ..+.|-  +..-|++++.|+.|+++.+... .++.++.+|.++|.++.|+|.+.+|++++.|++++||..........+.
T Consensus       322 lDVdW~--~~~~F~ts~td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~  398 (524)
T KOG0273|consen  322 LDVDWQ--SNDEFATSSTDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ  398 (524)
T ss_pred             cceEEe--cCceEeecCCCceEEEEEecCC-CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh
Confidence            788887  5567899999999999999876 8899999999999999999999999999999999999988877777766


Q ss_pred             ccCCCCCCCCeeEEEeCCCC---------CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEe
Q 016458          290 QQHGENEIPHVTSIAFSISG---------RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT  360 (389)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  360 (389)
                      .+...     |..+.|+|+|         ..+++++.|+.|++||+..+.++..+    ..|..+|.+++|+|+|+++|+
T Consensus       399 ~Hske-----i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f----~kH~~pVysvafS~~g~ylAs  469 (524)
T KOG0273|consen  399 AHSKE-----IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL----MKHQEPVYSVAFSPNGRYLAS  469 (524)
T ss_pred             hhccc-----eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee----ccCCCceEEEEecCCCcEEEe
Confidence            55543     8999999864         47899999999999999999999999    799999999999999999999


Q ss_pred             eeCCCeeEEeecceecccCcccC
Q 016458          361 GSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       361 ~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      |+.||.|.|    |+.+++++..
T Consensus       470 Gs~dg~V~i----ws~~~~~l~~  488 (524)
T KOG0273|consen  470 GSLDGCVHI----WSTKTGKLVK  488 (524)
T ss_pred             cCCCCeeEe----ccccchheeE
Confidence            999999999    9999999865

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=9.1e-43  Score=280.27  Aligned_cols=278  Identities=23%  Similarity=0.389  Sum_probs=254.8

Q ss_pred             CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (389)
                      ..|++++|+.+|..||+|+.||.+++|+ .+|..+.++..|.++|.++.|+..|.+|++++.|+++.+||..++.     
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~-----  309 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT-----  309 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce-----
Confidence            4699999999999999999999999999 5688889999999999999999999999999999999999997765     


Q ss_pred             CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (389)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (389)
                        ..+.+.-|..+-.++.|-.+.  .|++++.|+.|+++.+....+..++     .+|.++|.++.|+| .+.+|++++.
T Consensus       310 --~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~-----~GH~g~V~alk~n~-tg~LLaS~Sd  379 (524)
T KOG0273|consen  310 --VKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTF-----IGHHGEVNALKWNP-TGSLLASCSD  379 (524)
T ss_pred             --EEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceee-----ecccCceEEEEECC-CCceEEEecC
Confidence              677788888887889998754  6999999999999999999999998     78999999999999 8999999999


Q ss_pred             CCceEEEeCCCCCcceeEEeeeccceEEEEEecCC---------CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCC
Q 016458          228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG---------NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP  298 (389)
Q Consensus       228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  298 (389)
                      |++++||..... .....+.+|...|..+.|+|.|         ..+++++.|++|++||+..+.++..+..+..     
T Consensus       380 D~TlkiWs~~~~-~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~-----  453 (524)
T KOG0273|consen  380 DGTLKIWSMGQS-NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE-----  453 (524)
T ss_pred             CCeeEeeecCCC-cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC-----
Confidence            999999998877 7888999999999999999953         5799999999999999999999999866554     


Q ss_pred             CeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceec
Q 016458          299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRV  376 (389)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~  376 (389)
                      +|.+++|+|+|+|+|+|+.||.|.+|+.++++..+..     .-.+.|..++|+.+|.+|..+-.||.+++    -|+
T Consensus       454 pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~-----~~~~~Ifel~Wn~~G~kl~~~~sd~~vcv----ldl  522 (524)
T KOG0273|consen  454 PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY-----QGTGGIFELCWNAAGDKLGACASDGSVCV----LDL  522 (524)
T ss_pred             ceEEEEecCCCcEEEecCCCCeeEeccccchheeEee-----cCCCeEEEEEEcCCCCEEEEEecCCCceE----EEe
Confidence            5999999999999999999999999999999999987     34567999999999999999999999998    665

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.2e-41  Score=285.29  Aligned_cols=288  Identities=35%  Similarity=0.582  Sum_probs=257.0

Q ss_pred             eeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458           60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN  139 (389)
Q Consensus        60 ~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~  139 (389)
                      .++|++|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.|+|+++.+++++.+|.|++|++.
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            35788999999999999999999999999999999999998888888898999999999999999999999999999998


Q ss_pred             CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (389)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (389)
                      .+.       ....+..|...+.++.|++++ .++++++.+|.|.+||+.+++....+     ..|...+.++.++| ++
T Consensus        82 ~~~-------~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~-~~  147 (289)
T cd00200          82 TGE-------CVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTL-----RGHTDWVNSVAFSP-DG  147 (289)
T ss_pred             ccc-------ceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEe-----ccCCCcEEEEEEcC-cC
Confidence            743       455667888899999999985 67888878999999999988888877     57888999999999 67


Q ss_pred             cEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458          220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (389)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (389)
                      .++++++.++.|++||++.. +....+..|...+.+++|+|+++.+++++.||.|++||++.++....+..+.     ..
T Consensus       148 ~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-----~~  221 (289)
T cd00200         148 TFVASSSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE-----NG  221 (289)
T ss_pred             CEEEEEcCCCcEEEEEcccc-ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC-----Cc
Confidence            88888888999999999876 6777888888899999999999999999999999999999877776664332     25


Q ss_pred             eeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458          300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR  375 (389)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~  375 (389)
                      +.+++|+|++.++++++.+|.|++||+.+++....+    ..|...|.+++|++++.+|++++.||.+++    |+
T Consensus       222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i----w~  289 (289)
T cd00200         222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL----SGHTNSVTSLAWSPDGKRLASGSADGTIRI----WD  289 (289)
T ss_pred             eEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc----cccCCcEEEEEECCCCCEEEEecCCCeEEe----cC
Confidence            999999999889988888999999999998888888    688889999999999999999999999999    96

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.4e-44  Score=291.61  Aligned_cols=297  Identities=21%  Similarity=0.400  Sum_probs=256.6

Q ss_pred             ceeeeecccccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCC-CCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEE
Q 016458           57 LVCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCS  134 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  134 (389)
                      -+.++++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|..++|+++|..+++++.|+.++
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK  283 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK  283 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence            356778999999999999999 888999999999999999876 889999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEe
Q 016458          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI  214 (389)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  214 (389)
                      +||+++++       +...+. ....++|+.|.|++.+.|++|+.|+.|+.||+++++.+..+     ..|-+.|..+.|
T Consensus       284 lwDtETG~-------~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY-----d~hLg~i~~i~F  350 (503)
T KOG0282|consen  284 LWDTETGQ-------VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY-----DRHLGAILDITF  350 (503)
T ss_pred             eeccccce-------EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH-----HhhhhheeeeEE
Confidence            99999976       444433 34568999999999899999999999999999999998888     788999999999


Q ss_pred             eCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCC
Q 016458          215 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE  294 (389)
Q Consensus       215 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  294 (389)
                      -+ ++..+++++.|++++||+.+.+-........+.....++..+|++++++.-+.|+.|.+|.+...-.........+.
T Consensus       351 ~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh  429 (503)
T KOG0282|consen  351 VD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGH  429 (503)
T ss_pred             cc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcce
Confidence            99 88999999999999999999773332333334456788999999999999999999999997654333322222233


Q ss_pred             CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC-CCCeEEeeeCCCeeEEeecc
Q 016458          295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKVNLGF  373 (389)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~  373 (389)
                      ...+.-..+.|||||.+|++|+.||.+.+||.++.+.+..+    ..|++++..+.|+| ....+|+++.||.|++    
T Consensus       430 ~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l----kah~~~ci~v~wHP~e~Skvat~~w~G~Iki----  501 (503)
T KOG0282|consen  430 SVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL----KAHDQPCIGVDWHPVEPSKVATCGWDGLIKI----  501 (503)
T ss_pred             eccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc----ccCCcceEEEEecCCCcceeEecccCceeEe----
Confidence            33345678999999999999999999999999999999999    89999999999999 4567999999999999    


Q ss_pred             ee
Q 016458          374 WR  375 (389)
Q Consensus       374 W~  375 (389)
                      |+
T Consensus       502 wd  503 (503)
T KOG0282|consen  502 WD  503 (503)
T ss_pred             cC
Confidence            96

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.3e-41  Score=277.33  Aligned_cols=323  Identities=20%  Similarity=0.328  Sum_probs=264.2

Q ss_pred             ccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe---eCCCcEEEEEE
Q 016458           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK---LPCAWVMTCAF  117 (389)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~---~~~~~v~~~~~  117 (389)
                      ...+.+-....+.-++++...+++.|..-|.|+.|+|||.++|+++.||+|.+||-.+++.+..+.   .|.+.|.+++|
T Consensus       164 ~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsW  243 (603)
T KOG0318|consen  164 ATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW  243 (603)
T ss_pred             EeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEE
Confidence            344445555667777888899999999999999999999999999999999999999999999998   89999999999


Q ss_pred             CCCCcEEEEecCCCcEEEEeCCCCCC------------------------------------CCCCCcceeeecccccce
Q 016458          118 SPTGQSVACGGLDSVCSIFNLNSPTD------------------------------------KDGNLPVSRMLSGHKGYV  161 (389)
Q Consensus       118 ~~~~~~l~~~~~dg~i~vw~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~v  161 (389)
                      +||++.+++++.|.+++|||+.+...                                    ..........+.+|...|
T Consensus       244 sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~I  323 (603)
T KOG0318|consen  244 SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSI  323 (603)
T ss_pred             CCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccce
Confidence            99999999999999999999987541                                    011223556788999999


Q ss_pred             EEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC-
Q 016458          162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-  240 (389)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-  240 (389)
                      +++..++++ .+|++|+.||.|.-|++.++..-....    ..|...|.+++.+.  ...+++.+.|.++++.++.... 
T Consensus       324 TaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g----~~h~nqI~~~~~~~--~~~~~t~g~Dd~l~~~~~~~~~~  396 (603)
T KOG0318|consen  324 TALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAG----KGHTNQIKGMAASE--SGELFTIGWDDTLRVISLKDNGY  396 (603)
T ss_pred             eEEEEcCCC-CEEEeeccCceEEEEecCCcccccccc----ccccceEEEEeecC--CCcEEEEecCCeEEEEecccCcc
Confidence            999999998 899999999999999999987766543    57889999999874  3457788889999999764221 


Q ss_pred             ----------cc-------------------eeEEeee--------ccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458          241 ----------RA-------------------VRTFHGH--------EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (389)
Q Consensus       241 ----------~~-------------------~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (389)
                                ++                   +..++.+        .-...+++++|++..+++|+.||.|++|.+....
T Consensus       397 t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~  476 (603)
T KOG0318|consen  397 TKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDE  476 (603)
T ss_pred             cccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCc
Confidence                      01                   0111111        1235689999999999999999999999998766


Q ss_pred             eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  363 (389)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  363 (389)
                      .......   ..+..+|++++||||+.|||++...+.+.+||+.+.+......   ..|...|.+++|+|+..++|||+-
T Consensus       477 l~ee~~~---~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w---~FHtakI~~~aWsP~n~~vATGSl  550 (603)
T KOG0318|consen  477 LKEEAKL---LEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW---AFHTAKINCVAWSPNNKLVATGSL  550 (603)
T ss_pred             ccceeee---ecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee---eeeeeeEEEEEeCCCceEEEeccc
Confidence            4333222   2334469999999999999999999999999999887743322   569999999999999999999999


Q ss_pred             CCeeEEeecceecccCc
Q 016458          364 DTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       364 dg~i~i~~~~W~~~~~~  380 (389)
                      |-.|.|    |+++...
T Consensus       551 Dt~Vii----ysv~kP~  563 (603)
T KOG0318|consen  551 DTNVII----YSVKKPA  563 (603)
T ss_pred             cceEEE----EEccChh
Confidence            999999    9998653

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.3e-42  Score=270.78  Aligned_cols=289  Identities=19%  Similarity=0.299  Sum_probs=248.3

Q ss_pred             eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeC
Q 016458           59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL  138 (389)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~  138 (389)
                      ...+|.+|+++|.+++.+|+.++++||+.|..-.+|++.++.....+.+|...|+++.|+.+|.+||+|+.+|.|.||+.
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458          139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN  218 (389)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  218 (389)
                      .++.       ....+...-..+.-+.|+|.+ ..|++|+.||.+.+|.+.++.....+     .+|..++++=.|.| +
T Consensus       136 stg~-------~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~-----~Gh~~~ct~G~f~p-d  201 (399)
T KOG0296|consen  136 STGG-------EQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVM-----SGHNSPCTCGEFIP-D  201 (399)
T ss_pred             ccCc-------eEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEe-----cCCCCCcccccccC-C
Confidence            9865       344444556778889999986 78999999999999999998777777     78999999999999 7


Q ss_pred             CcEEEEeeCCCceEEEeCCCCCcceeEEee--------------------------------------------------
Q 016458          219 SRMFVSGSCDSTARLWDTRVASRAVRTFHG--------------------------------------------------  248 (389)
Q Consensus       219 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------------------------------------------  248 (389)
                      ++.++++..||+|++||+.++ .++..+..                                                  
T Consensus       202 GKr~~tgy~dgti~~Wn~ktg-~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~  280 (399)
T KOG0296|consen  202 GKRILTGYDDGTIIVWNPKTG-QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKP  280 (399)
T ss_pred             CceEEEEecCceEEEEecCCC-ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccc
Confidence            999999999999999999887 44433320                                                  


Q ss_pred             -eccceEEEEE---ecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEE
Q 016458          249 -HEGDVNTVKF---FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW  324 (389)
Q Consensus       249 -~~~~i~~~~~---~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  324 (389)
                       +...+.++.+   +..-.+.++|+.||+|.|||+...+....+....      +|+.+.|-+ ..+|++++.+|.|+.|
T Consensus       281 ~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~------~V~~l~w~~-t~~l~t~c~~g~v~~w  353 (399)
T KOG0296|consen  281 SQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED------GVTKLKWLN-TDYLLTACANGKVRQW  353 (399)
T ss_pred             cchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCC------ceEEEEEcC-cchheeeccCceEEee
Confidence             1111222333   2234678899999999999998876655543322      499999988 7899999999999999


Q ss_pred             EcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          325 DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       325 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      |.++|+....+    .+|...|.+++++|+.++++|+|.|++.+|    +++.
T Consensus       354 DaRtG~l~~~y----~GH~~~Il~f~ls~~~~~vvT~s~D~~a~V----F~v~  398 (399)
T KOG0296|consen  354 DARTGQLKFTY----TGHQMGILDFALSPQKRLVVTVSDDNTALV----FEVP  398 (399)
T ss_pred             eccccceEEEE----ecCchheeEEEEcCCCcEEEEecCCCeEEE----EecC
Confidence            99999999999    899999999999999999999999999999    7764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-42  Score=258.65  Aligned_cols=271  Identities=24%  Similarity=0.388  Sum_probs=228.5

Q ss_pred             cccCCCCCcccCC-----CcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEE
Q 016458           42 SRSQGRAPVSFGP-----TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA  116 (389)
Q Consensus        42 ~~~~~~~~~~~~~-----~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~  116 (389)
                      +.+++.....|+.     .-....+.|.||...|..++.++||++.++++.|+++++||+.+++..+.+.+|...|.+++
T Consensus        33 sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva  112 (315)
T KOG0279|consen   33 SASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVA  112 (315)
T ss_pred             EcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEE
Confidence            4444555555543     34567899999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCeeEE
Q 016458          117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTS  195 (389)
Q Consensus       117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~  195 (389)
                      |+++.+.+++|+.|.+|++|+.-...      .....-..+.+.|.|+.|+|+. +.++++++.|++|++||+++.+...
T Consensus       113 ~s~dn~qivSGSrDkTiklwnt~g~c------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~  186 (315)
T KOG0279|consen  113 FSTDNRQIVSGSRDKTIKLWNTLGVC------KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT  186 (315)
T ss_pred             ecCCCceeecCCCcceeeeeeecccE------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence            99999999999999999999987632      1122222337899999999984 4789999999999999999999888


Q ss_pred             EecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEE
Q 016458          196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR  275 (389)
Q Consensus       196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  275 (389)
                      .+     .+|...++.++++| ++.++++|+.||.+.+||++.. +.+..+ .|...|.+++|+|+.-.|+.+. +..|+
T Consensus       187 ~~-----~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~-k~lysl-~a~~~v~sl~fspnrywL~~at-~~sIk  257 (315)
T KOG0279|consen  187 TF-----IGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEG-KNLYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIK  257 (315)
T ss_pred             cc-----ccccccEEEEEECC-CCCEEecCCCCceEEEEEccCC-ceeEec-cCCCeEeeEEecCCceeEeecc-CCceE
Confidence            88     79999999999999 9999999999999999999987 555555 4788999999999876666554 45699


Q ss_pred             EEECCCCceeeEeeccCCC----CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          276 LFDIRTGHQLQVYYQQHGE----NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      |||+.++..+..+......    .......+++|+++|..|++|..|+.|++|.+.
T Consensus       258 Iwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  258 IWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            9999998887776543322    123347889999999999999999999999864

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.3e-43  Score=298.37  Aligned_cols=283  Identities=30%  Similarity=0.538  Sum_probs=244.3

Q ss_pred             eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Q 016458           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (389)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (389)
                      .|.-++.--...++|..|++|+.+||.|..|..|++|.+... .+..++...       +   ...+=+.+.|-.+.+.|
T Consensus       369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~-------~---l~~~d~~sad~~~~~~D  437 (707)
T KOG0263|consen  369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDAS-------D---LSNIDTESADVDVDMLD  437 (707)
T ss_pred             EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccchh-------h---hccccccccchhhhhcc
Confidence            455566555567999999999999999999999999998754 222332211       1   11122233343455555


Q ss_pred             CCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC
Q 016458          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS  217 (389)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  217 (389)
                      .....       ....+.+|.++|..+.|+|+. ++|++++.|+++++|.+.+..++..+     .+|..+|..+.|+| 
T Consensus       438 ~~~~~-------~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y-----~GH~~PVwdV~F~P-  503 (707)
T KOG0263|consen  438 DDSSG-------TSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIY-----KGHLAPVWDVQFAP-  503 (707)
T ss_pred             ccCCc-------eeEEeecCCCceeeeeecccc-cceeeccCCcceeeeecccceeEEEe-----cCCCcceeeEEecC-
Confidence            55433       566789999999999999997 89999999999999999999999999     89999999999999 


Q ss_pred             CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCC
Q 016458          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI  297 (389)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  297 (389)
                      .+.+|++++.|++-++|..... .+++.+.+|.+.|.|+.|+|+..|+++|+.|.+|++||+.+|..++.+..+..    
T Consensus       504 ~GyYFatas~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~----  578 (707)
T KOG0263|consen  504 RGYYFATASHDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG----  578 (707)
T ss_pred             CceEEEecCCCceeeeeecccC-CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC----
Confidence            8999999999999999999887 89999999999999999999999999999999999999999999999966444    


Q ss_pred             CCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                       +|++++|||+|++|++|+.||.|.+||+.+++.+..+    .+|.+.|.++.|+.||..||+||.|..|++    ||+.
T Consensus       579 -~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l----~~Ht~ti~SlsFS~dg~vLasgg~DnsV~l----WD~~  649 (707)
T KOG0263|consen  579 -PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL----KGHTGTIYSLSFSRDGNVLASGGADNSVRL----WDLT  649 (707)
T ss_pred             -ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh----hcccCceeEEEEecCCCEEEecCCCCeEEE----EEch
Confidence             5999999999999999999999999999999999999    899999999999999999999999999999    9987


Q ss_pred             cC
Q 016458          378 EG  379 (389)
Q Consensus       378 ~~  379 (389)
                      .-
T Consensus       650 ~~  651 (707)
T KOG0263|consen  650 KV  651 (707)
T ss_pred             hh
Confidence            53

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.6e-41  Score=251.64  Aligned_cols=288  Identities=19%  Similarity=0.287  Sum_probs=249.5

Q ss_pred             ccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--eeEEEeeCCCcEEEEEEC
Q 016458           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFS  118 (389)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~  118 (389)
                      .+.+.+-.+..|......|.++++...+.|+.+...|+++.||+|+.- .||+||+.++.  ++.++.+|...|+++.|.
T Consensus        14 vsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~   92 (311)
T KOG0315|consen   14 VSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQ   92 (311)
T ss_pred             EeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEe
Confidence            345566777889999999999999889999999999999999999875 79999998765  588899999999999999


Q ss_pred             CCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec
Q 016458          119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (389)
Q Consensus       119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  198 (389)
                      .+|+.+++|++||+++|||++...        ......|..+|+++..+|+. ..|++|..+|.|++||+....+...+.
T Consensus        93 ~dgrWMyTgseDgt~kIWdlR~~~--------~qR~~~~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~li  163 (311)
T KOG0315|consen   93 CDGRWMYTGSEDGTVKIWDLRSLS--------CQRNYQHNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELI  163 (311)
T ss_pred             ecCeEEEecCCCceEEEEeccCcc--------cchhccCCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCccccccC
Confidence            999999999999999999998733        34455678999999999985 689999999999999999987776664


Q ss_pred             CcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCC-----CcceeEEeeeccceEEEEEecCCCEEEEEecCCe
Q 016458          199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA-----SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  273 (389)
Q Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  273 (389)
                          ......|.++.+.| ++.+++.+...|..++|++-..     -.++..++.|++.+..+.+||++++|++++.|.+
T Consensus       164 ----Pe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt  238 (311)
T KOG0315|consen  164 ----PEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT  238 (311)
T ss_pred             ----CCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce
Confidence                34557899999999 8999999999999999998653     2466788999999999999999999999999999


Q ss_pred             EEEEECCCC-ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEEC
Q 016458          274 CRLFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  352 (389)
Q Consensus       274 i~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  352 (389)
                      ++||+..+. +....+     ..+..++..++||.||+||++|+.|+.+++||+..++.+...    .+|.....|++..
T Consensus       239 v~iwn~~~~~kle~~l-----~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy----~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  239 VKIWNTDDFFKLELVL-----TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY----QGHHKAAVCVALN  309 (311)
T ss_pred             EEEEecCCceeeEEEe-----ecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec----CCcccccEEEEee
Confidence            999999887 222222     223347999999999999999999999999999999999998    7888888887754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.2e-41  Score=287.18  Aligned_cols=309  Identities=23%  Similarity=0.355  Sum_probs=267.3

Q ss_pred             ccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecC-CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC
Q 016458           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQD-GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL  129 (389)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~d-g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  129 (389)
                      .+..+...+++.|.--..+|..++|+..|++||.|+.. |.+.||+..+..-+...++|...+++++++|||+++++|+.
T Consensus       291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e  370 (893)
T KOG0291|consen  291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE  370 (893)
T ss_pred             EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC
Confidence            44557778888888888899999999999999998765 89999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCe
Q 016458          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV  209 (389)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  209 (389)
                      ||.|+|||..++-       +..++..|+..|+.+.|+..+ +.+++++-||+|+.||+......+++.    ...+...
T Consensus       371 DgKVKvWn~~Sgf-------C~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft----~P~p~Qf  438 (893)
T KOG0291|consen  371 DGKVKVWNTQSGF-------CFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFT----SPEPIQF  438 (893)
T ss_pred             CCcEEEEeccCce-------EEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeec----CCCceee
Confidence            9999999998866       889999999999999999997 789999999999999999999888884    3344557


Q ss_pred             eEEEeeCCCCcEEEEeeCCC-ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc-eeeE
Q 016458          210 LSVSISGSNSRMFVSGSCDS-TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH-QLQV  287 (389)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~  287 (389)
                      .|++..| .+.++.+|+.|. .|.+|++.++ +.+..+.+|++||.+++|+|++..|++++.|.+|++||+-... ....
T Consensus       439 scvavD~-sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt  516 (893)
T KOG0291|consen  439 SCVAVDP-SGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVET  516 (893)
T ss_pred             eEEEEcC-CCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeee
Confidence            7888888 778888887765 6999999998 8999999999999999999999999999999999999986653 3333


Q ss_pred             eeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC----------------CCCCCCeeEEEE
Q 016458          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ----------------NSHEGRITCLGL  351 (389)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------------~~~~~~v~~~~~  351 (389)
                      +...+      .+..++|+|+|+-|++++.||.|.+||...+.....+....                .......+.+++
T Consensus       517 l~i~s------dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~y  590 (893)
T KOG0291|consen  517 LEIRS------DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICY  590 (893)
T ss_pred             Eeecc------ceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEE
Confidence            33322      28999999999999999999999999988776664442110                123367899999


Q ss_pred             CCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          352 SADGSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       352 ~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      ++||.++++||....|++    +++.++-+..
T Consensus       591 SaDG~~IlAgG~sn~iCi----Y~v~~~vllk  618 (893)
T KOG0291|consen  591 SADGKCILAGGESNSICI----YDVPEGVLLK  618 (893)
T ss_pred             cCCCCEEEecCCcccEEE----EECchhheee
Confidence            999999999999999999    9999986643

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.4e-41  Score=256.31  Aligned_cols=303  Identities=19%  Similarity=0.360  Sum_probs=257.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhccc--------------------------ccccccccCCCCCcc
Q 016458            3 SSVSELKERHAAAIETVNSLRERLKQKR-----QQLLDV--------------------------DVAGYSRSQGRAPVS   51 (389)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--------------------------~~~~~~~~~~~~~~~   51 (389)
                      +++|+|.++.++++.++++.+.++....     ..+...                          .....+.++++....
T Consensus         2 ~~~~~l~~Eae~L~~qi~~~r~~~~D~~l~q~a~~~~~~~~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIv   81 (343)
T KOG0286|consen    2 EELEQLRQEAEQLKNQIRDARKKLNDVTLAQIAERLESVGRIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIV   81 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhccccceeeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEE
Confidence            5788888888888888888776654421     111000                          022334556666777


Q ss_pred             cCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC------CeeEEEeeCCCcEEEEEECCCCcEEE
Q 016458           52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS------QKTHAIKLPCAWVMTCAFSPTGQSVA  125 (389)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~  125 (389)
                      |+.......+.+.--..-|..++|+|.|+++|+|+-|+...||++.+.      .....+.+|.+.+.|+.|.+ ...|+
T Consensus        82 WDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~il  160 (343)
T KOG0286|consen   82 WDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHIL  160 (343)
T ss_pred             EEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceE
Confidence            888887777777777888999999999999999999999999999865      34566889999999999987 56689


Q ss_pred             EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCC
Q 016458          126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH  205 (389)
Q Consensus       126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  205 (389)
                      +++.|.++.+||+++++       ....+.+|.+.|.++.++|...+.+++|+.|+..++||++.+.+.+.|     .+|
T Consensus       161 T~SGD~TCalWDie~g~-------~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF-----~gh  228 (343)
T KOG0286|consen  161 TGSGDMTCALWDIETGQ-------QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF-----EGH  228 (343)
T ss_pred             ecCCCceEEEEEcccce-------EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee-----ccc
Confidence            99999999999999877       788899999999999999955589999999999999999999999999     899


Q ss_pred             CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee--eccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (389)
Q Consensus       206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (389)
                      ...|+++.|.| ++.-|++|+.|++.++||+|.. +.+..+..  ...+|++++||..|++|++|..|..+.+||.-.++
T Consensus       229 esDINsv~ffP-~G~afatGSDD~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e  306 (343)
T KOG0286|consen  229 ESDINSVRFFP-SGDAFATGSDDATCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE  306 (343)
T ss_pred             ccccceEEEcc-CCCeeeecCCCceeEEEeecCC-cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc
Confidence            99999999999 8999999999999999999987 55555542  34579999999999999999999999999999998


Q ss_pred             eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (389)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (389)
                      ....+..+..     .|+++..+|||..+++|+.|..++||.
T Consensus       307 ~vg~L~GHeN-----RvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  307 RVGVLAGHEN-----RVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eEEEeeccCC-----eeEEEEECCCCcEEEecchhHheeecC
Confidence            8888876555     499999999999999999999999994

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.9e-41  Score=294.39  Aligned_cols=295  Identities=27%  Similarity=0.510  Sum_probs=262.1

Q ss_pred             eeecccc-cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458           60 CRTLQGH-AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (389)
Q Consensus        60 ~~~l~~h-~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (389)
                      ...+.+| ...|.++.|+++|+.+++++.|+.+++|+..+.+  ....+..|...|..++|+|+++++++++.|++|++|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW  230 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence            5566555 7799999999999999999999999999997777  677778899999999999999999999999999999


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  216 (389)
                      |+...      ....+.+.+|...|++++|+|++ +++++|+.|++|++||++++++...+     ..|...|.+++|++
T Consensus       231 d~~~~------~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l-----~~hs~~is~~~f~~  298 (456)
T KOG0266|consen  231 DLKDD------GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKL-----KGHSDGISGLAFSP  298 (456)
T ss_pred             eccCC------CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEee-----eccCCceEEEEECC
Confidence            99442      22678899999999999999998 89999999999999999999999999     89999999999999


Q ss_pred             CCCcEEEEeeCCCceEEEeCCCCCc-ceeEEeeeccc--eEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC
Q 016458          217 SNSRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGD--VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG  293 (389)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  293 (389)
                       ++++|++++.|+.|++||+.++.. +...+..+...  ++++.|+|++.++++++.|+.+++||+..+.....+..+..
T Consensus       299 -d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~  377 (456)
T KOG0266|consen  299 -DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN  377 (456)
T ss_pred             -CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence             889999999999999999998732 35566666555  99999999999999999999999999999988888776554


Q ss_pred             CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCC-CCCeeEEEECCCCCeEEeee--CCCeeEEe
Q 016458          294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH-EGRITCLGLSADGSALCTGS--WDTNLKVN  370 (389)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~dg~i~i~  370 (389)
                      .  ...+.+..+++.+.++++|+.|+.|++||+.++..+..+    .+| ...+..+.+++...++++++  .|+.+++ 
T Consensus       378 ~--~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l----~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~-  450 (456)
T KOG0266|consen  378 L--VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL----EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRL-  450 (456)
T ss_pred             c--ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh----cCCCCCceeccccCCCcCeeeecCcCCCceEEE-
Confidence            3  123556666889999999999999999999998888888    788 88999999999999999998  7899999 


Q ss_pred             ecceecc
Q 016458          371 LGFWRVQ  377 (389)
Q Consensus       371 ~~~W~~~  377 (389)
                         |..+
T Consensus       451 ---w~~~  454 (456)
T KOG0266|consen  451 ---WKYD  454 (456)
T ss_pred             ---ecCC
Confidence               9764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.1e-39  Score=304.25  Aligned_cols=290  Identities=17%  Similarity=0.302  Sum_probs=238.9

Q ss_pred             cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC----C----eeEEEeeCCCcEEEEEECC-CCcEEEEecCCCcE
Q 016458           63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS----Q----KTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVC  133 (389)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~----~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i  133 (389)
                      +.+|.+.|.+++|+|++++||+|+.|+.|+||+....    .    ....+. +...+.+++|++ .+.+|++++.||.|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            4459999999999999999999999999999997542    1    122222 346789999987 57899999999999


Q ss_pred             EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (389)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  213 (389)
                      ++||+.++.       ....+.+|.+.|++++|+|..+.+|++|+.||.|++||+.++.....+     . +...+.++.
T Consensus       558 ~lWd~~~~~-------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-----~-~~~~v~~v~  624 (793)
T PLN00181        558 QVWDVARSQ-------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI-----K-TKANICCVQ  624 (793)
T ss_pred             EEEECCCCe-------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE-----e-cCCCeEEEE
Confidence            999998754       567788999999999999854578999999999999999998888776     3 335789999


Q ss_pred             eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCC------ceeeE
Q 016458          214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG------HQLQV  287 (389)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~  287 (389)
                      |++.++.+|++|+.||.|++||++....++..+.+|...|.++.|. ++.+|++++.|+.|++||++..      ..+..
T Consensus       625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~  703 (793)
T PLN00181        625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS  703 (793)
T ss_pred             EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEE
Confidence            9776899999999999999999997755677888999999999997 7789999999999999999753      33444


Q ss_pred             eeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC---------cCCCCCCCeeEEEECCCCCeE
Q 016458          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS---------LQNSHEGRITCLGLSADGSAL  358 (389)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l  358 (389)
                      +..     +...+..++|+|++.+|++|+.||.|++|+.....++..+..         ....+...|.+++|+|++..|
T Consensus       704 ~~g-----h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~l  778 (793)
T PLN00181        704 FMG-----HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTL  778 (793)
T ss_pred             EcC-----CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeE
Confidence            433     233588999999999999999999999999876544432210         012355679999999999999


Q ss_pred             EeeeCCCeeEEeecceec
Q 016458          359 CTGSWDTNLKVNLGFWRV  376 (389)
Q Consensus       359 ~~~~~dg~i~i~~~~W~~  376 (389)
                      ++|+.||.|+|    |++
T Consensus       779 va~~~dG~I~i----~~~  792 (793)
T PLN00181        779 VAANSTGNIKI----LEM  792 (793)
T ss_pred             EEecCCCcEEE----Eec
Confidence            99999999999    986

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-40  Score=244.66  Aligned_cols=284  Identities=22%  Similarity=0.321  Sum_probs=249.1

Q ss_pred             eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Q 016458           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (389)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (389)
                      +..+.|..|+++|.++.|+-+|+|.++++.|.+|++||...+..++++.+|...|..++.+.++..+++|+.|..|.+||
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            35667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC--eeEEEecCcccCCCCCCeeEEEee
Q 016458          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSIS  215 (389)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~  215 (389)
                      +++++       ..+.+.+|.+.|+.+.|+.+. ..+++|+.|.++++||-++.  ++++.+     ....+.|.++...
T Consensus        88 V~TGk-------v~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQil-----dea~D~V~Si~v~  154 (307)
T KOG0316|consen   88 VNTGK-------VDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQIL-----DEAKDGVSSIDVA  154 (307)
T ss_pred             cccCe-------eeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchh-----hhhcCceeEEEec
Confidence            99987       789999999999999999986 79999999999999998875  555555     5677889999985


Q ss_pred             CCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCC
Q 016458          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN  295 (389)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  295 (389)
                         ...+++|+.||+++.||++.+ ......  ...+|++++|+++++..++++.|+++++.|-.+|+.+..+..+... 
T Consensus       155 ---~heIvaGS~DGtvRtydiR~G-~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~-  227 (307)
T KOG0316|consen  155 ---EHEIVAGSVDGTVRTYDIRKG-TLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM-  227 (307)
T ss_pred             ---ccEEEeeccCCcEEEEEeecc-eeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc-
Confidence               478999999999999999987 443333  3458999999999999999999999999999999999888765433 


Q ss_pred             CCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCC-eeEEEECCCCCeEEeeeCCCee
Q 016458          296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR-ITCLGLSADGSALCTGSWDTNL  367 (389)
Q Consensus       296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i  367 (389)
                        ..-..++++.....+++|++||.|++||+.....+..+    ..+... |++++++|.-..|+++...+.+
T Consensus       228 --eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~----~~~~~v~v~dl~~hp~~~~f~~A~~~~~~  294 (307)
T KOG0316|consen  228 --EYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKL----SVVSTVIVTDLSCHPTMDDFITATGHGDL  294 (307)
T ss_pred             --eeeeeeeecccceeEEeccCCceEEEEEeccceeeeee----ccCCceeEEeeecccCccceeEecCCcee
Confidence              23466788888889999999999999999999999888    667776 8999999987777777654433

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-40  Score=281.26  Aligned_cols=328  Identities=22%  Similarity=0.328  Sum_probs=274.3

Q ss_pred             cccccccCCCCCcccCCCcceeeeeccc-ccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEE
Q 016458           38 VAGYSRSQGRAPVSFGPTDLVCCRTLQG-HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA  116 (389)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~  116 (389)
                      ...+...+......|..+..++++.+++ |++||.-++|+|.+..|++|+.||.++|||+..+...+.+++|.+.|.++.
T Consensus        75 ~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~  154 (775)
T KOG0319|consen   75 EVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLL  154 (775)
T ss_pred             cEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEE
Confidence            3444555666777888888899999999 999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCc--EEEEecCCCcEEEEeCCCCC----------------------------------------------------
Q 016458          117 FSPTGQ--SVACGGLDSVCSIFNLNSPT----------------------------------------------------  142 (389)
Q Consensus       117 ~~~~~~--~l~~~~~dg~i~vw~~~~~~----------------------------------------------------  142 (389)
                      |+|+-+  .|++|..|+.+++||+....                                                    
T Consensus       155 F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye  234 (775)
T KOG0319|consen  155 FHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYE  234 (775)
T ss_pred             eCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhh
Confidence            998654  47888888899999888433                                                    


Q ss_pred             --------------------------------------------------------------------------------
Q 016458          143 --------------------------------------------------------------------------------  142 (389)
Q Consensus       143 --------------------------------------------------------------------------------  142 (389)
                                                                                                      
T Consensus       235 ~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~  314 (775)
T KOG0319|consen  235 SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT  314 (775)
T ss_pred             heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence                                                                                            


Q ss_pred             ------------------C----------C-------CCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458          143 ------------------D----------K-------DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (389)
Q Consensus       143 ------------------~----------~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  187 (389)
                                        .          .       .........+.+|...|.++....+| -+|++|+.|.++++|.
T Consensus       315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr  393 (775)
T KOG0319|consen  315 IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWR  393 (775)
T ss_pred             EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEE
Confidence                              0          0       00001123566788888888855555 6899999999999998


Q ss_pred             CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC--c--cee----EEeeeccceEEEEEe
Q 016458          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--R--AVR----TFHGHEGDVNTVKFF  259 (389)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~--~~~----~~~~~~~~i~~~~~~  259 (389)
                      ++++...... .....+|...|.+++++.....+|++++.|+++++|++....  .  ...    ....|...|++++++
T Consensus       394 ~~~~~~~~~~-~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia  472 (775)
T KOG0319|consen  394 LNNNCSKSLC-VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA  472 (775)
T ss_pred             ecCCcchhhh-hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec
Confidence            8544322211 112268999999999988778899999999999999998621  1  111    235699999999999


Q ss_pred             cCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC
Q 016458          260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ  339 (389)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  339 (389)
                      |+.+++++|+.|.+.++|++........+..+..     .+.++.|+|..+.+++++.|++|+||.+.+..++.++    
T Consensus       473 ~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R-----Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~----  543 (775)
T KOG0319|consen  473 PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR-----GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF----  543 (775)
T ss_pred             CCCceEEecccccceeeecccCceEEEEeeCCcc-----ceEEEEeccccceeEeccCCceEEEEEeccceeeeee----
Confidence            9999999999999999999998888888866554     4999999999999999999999999999999999999    


Q ss_pred             CCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458          340 NSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       340 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~  380 (389)
                      .+|...|..+.|-.+|+.|++++.||.+++    |+++++.
T Consensus       544 eGH~~aVlra~F~~~~~qliS~~adGliKl----Wnikt~e  580 (775)
T KOG0319|consen  544 EGHTSAVLRASFIRNGKQLISAGADGLIKL----WNIKTNE  580 (775)
T ss_pred             cCccceeEeeeeeeCCcEEEeccCCCcEEE----Eeccchh
Confidence            899999999999999999999999999999    9999875

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-39  Score=275.85  Aligned_cols=305  Identities=22%  Similarity=0.406  Sum_probs=258.8

Q ss_pred             CcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCe--eEEEeeCCCcEEEEEECCCCcEEEEecCCCc
Q 016458           55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCAFSPTGQSVACGGLDSV  132 (389)
Q Consensus        55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (389)
                      .++...+++.||...|.++.|+.|.++|++|+.|.++++|.+...+.  ...+.+|...|..+-|..+...+++.+.||.
T Consensus       133 ~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~  212 (893)
T KOG0291|consen  133 NPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGA  212 (893)
T ss_pred             CcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCce
Confidence            45678889999999999999999999999999999999999887666  6677899999999999999999999999999


Q ss_pred             EEEEeCCCCCC------------------C-CCC----------------------------------------------
Q 016458          133 CSIFNLNSPTD------------------K-DGN----------------------------------------------  147 (389)
Q Consensus       133 i~vw~~~~~~~------------------~-~~~----------------------------------------------  147 (389)
                      +.+|.......                  . ..+                                              
T Consensus       213 l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Ly  292 (893)
T KOG0291|consen  213 LFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLY  292 (893)
T ss_pred             EEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEE
Confidence            99998872100                  0 000                                              


Q ss_pred             ----CcceeeecccccceEEEEEeeCCCcEEEEee-CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458          148 ----LPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (389)
Q Consensus       148 ----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  222 (389)
                          ..+++.+.-...+|..+.|+..|+ .++.|+ .-|.+.||+..+...+...     .+|...+.+++++| ++.++
T Consensus       293 elP~f~lih~LSis~~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsEsYVlKQ-----QgH~~~i~~l~YSp-Dgq~i  365 (893)
T KOG0291|consen  293 ELPDFNLIHSLSISDQKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSESYVLKQ-----QGHSDRITSLAYSP-DGQLI  365 (893)
T ss_pred             ecCCceEEEEeecccceeeEEEecccCC-EEEEcCCccceEEEEEeeccceeeec-----cccccceeeEEECC-CCcEE
Confidence                000011111123455566666664 455444 4589999999988877776     79999999999999 99999


Q ss_pred             EEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeE
Q 016458          223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS  302 (389)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~  302 (389)
                      ++|+.||.|++||...+ -++.++..|...|+.+.|+..++.+++++.||+|+.||+...+..+++..+...    ...+
T Consensus       366 aTG~eDgKVKvWn~~Sg-fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~----Qfsc  440 (893)
T KOG0291|consen  366 ATGAEDGKVKVWNTQSG-FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI----QFSC  440 (893)
T ss_pred             EeccCCCcEEEEeccCc-eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce----eeeE
Confidence            99999999999999987 899999999999999999999999999999999999999999998888775543    4789


Q ss_pred             EEeCCCCCEEEEEecCC-cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          303 IAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       303 ~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      ++..|.|..+++|+.|. .|.+|++++|+.+-.+    .+|++||.+++|+|++..|+++++|.+|++    |++-..
T Consensus       441 vavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL----sGHEgPVs~l~f~~~~~~LaS~SWDkTVRi----W~if~s  510 (893)
T KOG0291|consen  441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL----SGHEGPVSGLSFSPDGSLLASGSWDKTVRI----WDIFSS  510 (893)
T ss_pred             EEEcCCCCEEEeeccceEEEEEEEeecCeeeehh----cCCCCcceeeEEccccCeEEeccccceEEE----EEeecc
Confidence            99999999999998886 6999999999999999    899999999999999999999999999999    998654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-40  Score=277.18  Aligned_cols=288  Identities=23%  Similarity=0.378  Sum_probs=264.9

Q ss_pred             eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeC
Q 016458           59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL  138 (389)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~  138 (389)
                      ..+++..|+..|.++.|+|...+++++-.+|.|.|||.++...+..+.....+|.++.|-+..+.+++|+.|..|+||+.
T Consensus         5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen    5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence            34567779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEEeeCC
Q 016458          139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGS  217 (389)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~  217 (389)
                      ++..       ....+..|...|.+++.+|.. .++++++.|-.|++||.+.+ .+...+     .+|...|++++|+|.
T Consensus        85 nt~e-------kV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtf-----eGH~HyVMqv~fnPk  151 (794)
T KOG0276|consen   85 NTGE-------KVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTF-----EGHEHYVMQVAFNPK  151 (794)
T ss_pred             ccce-------eeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEE-----cCcceEEEEEEecCC
Confidence            9865       688999999999999999997 68999999999999999886 556667     899999999999999


Q ss_pred             CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec--CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCC
Q 016458          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN  295 (389)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  295 (389)
                      +.+.+++++-|++|++|.+.++ .+..++.+|...|+|++|-+  |..+|++|+.|..|++||..+..++.++..+... 
T Consensus       152 D~ntFaS~sLDrTVKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N-  229 (794)
T KOG0276|consen  152 DPNTFASASLDRTVKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN-  229 (794)
T ss_pred             CccceeeeeccccEEEEEcCCC-CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc-
Confidence            9999999999999999999988 88889999999999999988  4569999999999999999999999988765554 


Q ss_pred             CCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                          |+.++|+|.-..+++|+.||+++||+..+-+...++    ....++|.|++-.+.+..++.|...|.+.+
T Consensus       230 ----vs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL----n~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  230 ----VSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL----NYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             ----ceEEEecCCCcEEEEecCCccEEEecCcceehhhhh----hcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence                999999999999999999999999999988888887    566779999999998888999988888876

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.7e-40  Score=260.66  Aligned_cols=296  Identities=19%  Similarity=0.361  Sum_probs=245.6

Q ss_pred             ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC---eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcE
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC  133 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  133 (389)
                      .+..+.|..|++.|.-+.||++|++||+|+.|.+..+|.+....   ..+++.+|..+|..+.||||.++|++++.+..+
T Consensus       214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~  293 (519)
T KOG0293|consen  214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL  293 (519)
T ss_pred             chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence            35667899999999999999999999999999999999876544   477888999999999999999999999999999


Q ss_pred             EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (389)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  213 (389)
                      .+||..++...      ...-.++...+.+++|.||+ ..+++|+.|+.+..||+.... .....    ......|.+++
T Consensus       294 ~lwDv~tgd~~------~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~-~~~W~----gvr~~~v~dla  361 (519)
T KOG0293|consen  294 SLWDVDTGDLR------HLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNI-LGNWE----GVRDPKVHDLA  361 (519)
T ss_pred             eeccCCcchhh------hhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcch-hhccc----ccccceeEEEE
Confidence            99999986521      11122356789999999998 679999999999999987654 22221    23345699999


Q ss_pred             eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC
Q 016458          214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG  293 (389)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  293 (389)
                      ..+ +++.+++.+.|..|++|+.... .... +.....+|++++.|.+++++++.-.+..+++||+...+.+..+..+..
T Consensus       362 it~-Dgk~vl~v~~d~~i~l~~~e~~-~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq  438 (519)
T KOG0293|consen  362 ITY-DGKYVLLVTVDKKIRLYNREAR-VDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ  438 (519)
T ss_pred             EcC-CCcEEEEEecccceeeechhhh-hhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc
Confidence            998 8888888889999999998754 3322 333556899999999999999999999999999997777766655432


Q ss_pred             CCCCCCeeEEEeCC-CCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC-CCCeEEeeeCCCeeEEee
Q 016458          294 ENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKVNL  371 (389)
Q Consensus       294 ~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~  371 (389)
                         ...+..-||-- +..++++|++|+.|+||+..+++++..+    .+|...|++++|+| +...+|+||.||+|+|  
T Consensus       439 ---~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L----sGHs~~vNcVswNP~~p~m~ASasDDgtIRI--  509 (519)
T KOG0293|consen  439 ---GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL----SGHSKTVNCVSWNPADPEMFASASDDGTIRI--  509 (519)
T ss_pred             ---cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee----cCCcceeeEEecCCCCHHHhhccCCCCeEEE--
Confidence               22355666754 4479999999999999999999999999    89999999999999 6778999999999999  


Q ss_pred             cceeccc
Q 016458          372 GFWRVQE  378 (389)
Q Consensus       372 ~~W~~~~  378 (389)
                        |....
T Consensus       510 --Wg~~~  514 (519)
T KOG0293|consen  510 --WGPSD  514 (519)
T ss_pred             --ecCCc
Confidence              98764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3e-40  Score=279.66  Aligned_cols=314  Identities=21%  Similarity=0.314  Sum_probs=275.3

Q ss_pred             CCCCcccCCCcceeeeecccccCcEEEEEEc-CCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458           46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWT-SERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV  124 (389)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~-~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  124 (389)
                      ++....++..+++..+.+.|..+.|.++.|- |+.++||.++..+.+++|+..+..+. .+.+|.+.|.++....+|.+|
T Consensus       302 eQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~ll  380 (775)
T KOG0319|consen  302 EQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLL  380 (775)
T ss_pred             cceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEE
Confidence            3444556778889999999999999999985 57789999999999999998877665 889999999999977788999


Q ss_pred             EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEe----cCc
Q 016458          125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF----GGE  200 (389)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~  200 (389)
                      ++|+.|.++++|.++.+.   ....+.....+|.+.|.+++++..+...|++++.|+++++|++...+.....    ...
T Consensus       381 at~sKD~svilWr~~~~~---~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~  457 (775)
T KOG0319|consen  381 ATGSKDKSVILWRLNNNC---SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY  457 (775)
T ss_pred             EEecCCceEEEEEecCCc---chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence            999999999999995533   3344566778999999999999888899999999999999999873222111    011


Q ss_pred             ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR  280 (389)
Q Consensus       201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  280 (389)
                      ....|...|++++++| +..++++|+.|.+.+||++... .....+.+|...|.++.|+|..+.++++|.|++|+||.+.
T Consensus       458 t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is  535 (775)
T KOG0319|consen  458 TERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS  535 (775)
T ss_pred             HHHhhcccccceEecC-CCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence            2357899999999999 8899999999999999999966 8889999999999999999999999999999999999999


Q ss_pred             CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEe
Q 016458          281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT  360 (389)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  360 (389)
                      +..++.++..+..     .|..+.|-.+|+.|++++.||.|++|++.++.+..++    ..|...|.+++.++.+..++|
T Consensus       536 ~fSClkT~eGH~~-----aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl----D~H~DrvWaL~~~~~~~~~~t  606 (775)
T KOG0319|consen  536 TFSCLKTFEGHTS-----AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL----DAHNDRVWALSVSPLLDMFVT  606 (775)
T ss_pred             cceeeeeecCccc-----eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh----hhccceeEEEeecCccceeEe
Confidence            9999999966554     4999999999999999999999999999999999999    899999999999999999999


Q ss_pred             eeCCCeeEEeecceeccc
Q 016458          361 GSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       361 ~~~dg~i~i~~~~W~~~~  378 (389)
                      |+.||.|.+    |.=.+
T Consensus       607 gg~Dg~i~~----wkD~T  620 (775)
T KOG0319|consen  607 GGGDGRIIF----WKDVT  620 (775)
T ss_pred             cCCCeEEEE----eecCc
Confidence            999999999    86544

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=9.7e-40  Score=278.97  Aligned_cols=216  Identities=28%  Similarity=0.502  Sum_probs=203.8

Q ss_pred             CCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCc
Q 016458           53 GPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV  132 (389)
Q Consensus        53 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (389)
                      ++......++|.||.++|..+.|+|+.++|++++.|++||+|.+.+...+..+++|..+|..+.|+|.|-++|+++.|++
T Consensus       437 D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~t  516 (707)
T KOG0263|consen  437 DDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQT  516 (707)
T ss_pred             cccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCce
Confidence            44455667789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (389)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  212 (389)
                      .++|..+...       ..+.+.+|.+.|.|+.|+|+. +++++|+.|.+|++||+.+|..++.|     .+|.++|.++
T Consensus       517 ArLWs~d~~~-------PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF-----~GH~~~V~al  583 (707)
T KOG0263|consen  517 ARLWSTDHNK-------PLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIF-----TGHKGPVTAL  583 (707)
T ss_pred             eeeeecccCC-------chhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEe-----cCCCCceEEE
Confidence            9999998744       678899999999999999997 89999999999999999999999999     8999999999


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (389)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (389)
                      +|+| .+.+|++|+.||.|.+||+.++ ..+..+.+|.+.|.++.|+.+|..|++|+.|.+|++||+....
T Consensus       584 ~~Sp-~Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  584 AFSP-CGRYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             EEcC-CCceEeecccCCcEEEEEcCCC-cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            9999 9999999999999999999988 8889999999999999999999999999999999999987643

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=6.6e-41  Score=264.96  Aligned_cols=255  Identities=22%  Similarity=0.415  Sum_probs=223.9

Q ss_pred             cCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC-CcEEEEEECCCCcEEEEecCC
Q 016458           52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLD  130 (389)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d  130 (389)
                      |.-..+.....+++|..+|.++.|++++.++++|+.+|.|++|+.. ...+..+..|. ..|++++|+|+...+++++.|
T Consensus       123 WNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdD  201 (464)
T KOG0284|consen  123 WNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDD  201 (464)
T ss_pred             ecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCC
Confidence            3333334444577899999999999999999999999999999964 34455555554 899999999999999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  210 (389)
                      |+|+|||....+       ....+.+|.-.|.++.|+|.. .++++++.|..|++||.+++.++..+     ..|...|.
T Consensus       202 g~ikiWdf~~~k-------ee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tl-----h~HKntVl  268 (464)
T KOG0284|consen  202 GTIKIWDFRMPK-------EERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATL-----HGHKNTVL  268 (464)
T ss_pred             CeEEEEeccCCc-------hhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhh-----hhccceEE
Confidence            999999998765       456679999999999999986 79999999999999999999999999     89999999


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEee
Q 016458          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (389)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (389)
                      .+.|+| ++++|++++.|..++++|+++. +.+..+++|...++++.|+| ...+|.+|+.||.|..|.+...+++..+.
T Consensus       269 ~~~f~~-n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~  346 (464)
T KOG0284|consen  269 AVKFNP-NGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP  346 (464)
T ss_pred             EEEEcC-CCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCC
Confidence            999999 7799999999999999999976 78889999999999999999 67789999999999999998666665554


Q ss_pred             ccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458          290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (389)
                      ..    +...|.+++|+|-|..|++|+.|.++++|.-
T Consensus       347 ~A----Hd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  347 PA----HDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             cc----cccceeeeeccccceeEeecCCCcceeeecc
Confidence            43    3446999999999999999999999999974

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.3e-37  Score=254.14  Aligned_cols=302  Identities=17%  Similarity=0.288  Sum_probs=259.8

Q ss_pred             CcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee--EEEeeCCCcEEEEEECCCCcEEEEecCC--
Q 016458           55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT--HAIKLPCAWVMTCAFSPTGQSVACGGLD--  130 (389)
Q Consensus        55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d--  130 (389)
                      .++.....+.+|..+++-..|+|.|.|+|+|...|+|||||....+.+  .+++.-.++|..++|+++++++++.++.  
T Consensus        47 ~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGre  126 (603)
T KOG0318|consen   47 DNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRE  126 (603)
T ss_pred             CCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcc
Confidence            344556678899999999999999999999999999999998664433  3456667899999999999999887653  


Q ss_pred             --CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCC
Q 016458          131 --SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD  208 (389)
Q Consensus       131 --g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  208 (389)
                        |.+.+||..+         ....+.+|...|.++.|-|..+-.+++|+.|++|.+|+-.-.+....+     ..|...
T Consensus       127 rfg~~F~~DSG~---------SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~-----r~HskF  192 (603)
T KOG0318|consen  127 RFGHVFLWDSGN---------SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF-----REHSKF  192 (603)
T ss_pred             ceeEEEEecCCC---------ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc-----cccccc
Confidence              4566777655         567789999999999999999889999999999999997766666666     689999


Q ss_pred             eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe---eeccceEEEEEecCCCEEEEEecCCeEEEEECCCCcee
Q 016458          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL  285 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  285 (389)
                      |.++.|+| ++.++++++.||.+.+||-.++ +.+..+.   +|.+.|.+++|+||+..+++++.|.+++|||+.+.+..
T Consensus       193 V~~VRysP-DG~~Fat~gsDgki~iyDGktg-e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv  270 (603)
T KOG0318|consen  193 VNCVRYSP-DGSRFATAGSDGKIYIYDGKTG-EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV  270 (603)
T ss_pred             eeeEEECC-CCCeEEEecCCccEEEEcCCCc-cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceE
Confidence            99999999 7999999999999999999988 7777776   89999999999999999999999999999999999988


Q ss_pred             eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (389)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  365 (389)
                      .++......  ......+.|-  +..|++.+.+|.|.+++.....++..+    .+|...|+++..++|+++|++|+.||
T Consensus       271 ~t~~~~~~v--~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i----~GHnK~ITaLtv~~d~~~i~SgsyDG  342 (603)
T KOG0318|consen  271 STWPMGSTV--EDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVI----SGHNKSITALTVSPDGKTIYSGSYDG  342 (603)
T ss_pred             EEeecCCch--hceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhhee----cccccceeEEEEcCCCCEEEeeccCc
Confidence            888765441  1123455564  568899999999999999999988888    89999999999999999999999999


Q ss_pred             eeEEeecceecccCcccCc
Q 016458          366 NLKVNLGFWRVQEGALSPW  384 (389)
Q Consensus       366 ~i~i~~~~W~~~~~~~~~~  384 (389)
                      .|.-    |+..+|.--+.
T Consensus       343 ~I~~----W~~~~g~~~~~  357 (603)
T KOG0318|consen  343 HINS----WDSGSGTSDRL  357 (603)
T ss_pred             eEEE----EecCCcccccc
Confidence            9999    99999876554

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=6.9e-39  Score=240.07  Aligned_cols=283  Identities=18%  Similarity=0.279  Sum_probs=241.8

Q ss_pred             ecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCC
Q 016458           62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP  141 (389)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  141 (389)
                      .|+||..+++.+.|+.+|.+|++++.|.++.+|-..+|+.+.++.+|.+.|.|+..+.+.+.+++|+.|.++++||+.++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee-----CCCeEEEEeCCC-------CeeEEEecCcccCCCCCCe
Q 016458          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-----GDQTCVLWDITT-------GLRTSVFGGEFQSGHTADV  209 (389)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~v  209 (389)
                      +       ....++ ...+|..+.|++++ ++++...     ..+.|.++|++.       .++...+     ..+.+.+
T Consensus        85 k-------~la~~k-~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-----~t~~ski  150 (327)
T KOG0643|consen   85 K-------QLATWK-TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-----PTPDSKI  150 (327)
T ss_pred             c-------EEEEee-cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe-----cCCccce
Confidence            6       344443 45789999999998 4555443     357899999983       3445555     5667899


Q ss_pred             eEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEee
Q 016458          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (389)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (389)
                      +.+-|.| .+..|++|..||.|.+||.+++.+.+.....|...|+.++++|+..++++++.|.+-++||.++...+.++.
T Consensus       151 t~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  151 TSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             eeeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence            9999999 888999999999999999999877788888899999999999999999999999999999999999888886


Q ss_pred             ccCCCCCCCCeeEEEeCCCCCEEEEEecCCcE--------------EEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458          290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDC--------------YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (389)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i--------------~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (389)
                      ...      |+++.+++|...+++.|+.....              ++|++-..+.+..+    ++|-++|++++|+|+|
T Consensus       230 te~------PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv----kGHFGPINsvAfhPdG  299 (327)
T KOG0643|consen  230 TER------PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV----KGHFGPINSVAFHPDG  299 (327)
T ss_pred             ecc------cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc----cccccCcceeEECCCC
Confidence            654      48999999988877776543222              22333233344444    7999999999999999


Q ss_pred             CeEEeeeCCCeeEE
Q 016458          356 SALCTGSWDTNLKV  369 (389)
Q Consensus       356 ~~l~~~~~dg~i~i  369 (389)
                      +..++|+.||.|++
T Consensus       300 ksYsSGGEDG~VR~  313 (327)
T KOG0643|consen  300 KSYSSGGEDGYVRL  313 (327)
T ss_pred             cccccCCCCceEEE
Confidence            99999999999999

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=3.3e-39  Score=255.72  Aligned_cols=291  Identities=21%  Similarity=0.349  Sum_probs=251.8

Q ss_pred             cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcE
Q 016458           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC  133 (389)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  133 (389)
                      +......+..|.+.|..+.|-++...|++|+.|..|++|+....+  ...++.+..++|+.+.|.++++.+++++.|+.+
T Consensus       164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~  243 (459)
T KOG0288|consen  164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL  243 (459)
T ss_pred             chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence            446667888999999999999998899999999999999987666  667777888899999999999999999999999


Q ss_pred             EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (389)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  213 (389)
                      ++|+++...       ...++.+|.+.|+++.|.... ..+++|+.|.+|+.||+....+...+      .....+..+.
T Consensus       244 r~Wnvd~~r-------~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~------l~~S~cnDI~  309 (459)
T KOG0288|consen  244 RLWNVDSLR-------LRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTV------LPGSQCNDIV  309 (459)
T ss_pred             eeeeccchh-------hhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccc------cccccccceE
Confidence            999998755       778899999999999998875 45999999999999999998887775      3445566666


Q ss_pred             eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC
Q 016458          214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG  293 (389)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  293 (389)
                      .+   ...+++|..|+.|++||.+.. .+......+. .|+++..++++..|.+++.|..+.+.|+++......+.....
T Consensus       310 ~~---~~~~~SgH~DkkvRfwD~Rs~-~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~  384 (459)
T KOG0288|consen  310 CS---ISDVISGHFDKKVRFWDIRSA-DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGF  384 (459)
T ss_pred             ec---ceeeeecccccceEEEeccCC-ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccc
Confidence            65   356889999999999999987 6666666554 899999999999999999999999999999887777755432


Q ss_pred             CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCC-CeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG-RITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                       ......+.+.|||++.|+++|+.||.|+||++.+++....+.   ..+.. .|++++|+|.|..|++++.++.+.+
T Consensus       385 -k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~---~s~s~~aI~s~~W~~sG~~Llsadk~~~v~l  457 (459)
T KOG0288|consen  385 -KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLS---LSTSNAAITSLSWNPSGSGLLSADKQKAVTL  457 (459)
T ss_pred             -ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEec---cCCCCcceEEEEEcCCCchhhcccCCcceEe
Confidence             223348999999999999999999999999999999998885   23333 6999999999999999999999999

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-36  Score=233.43  Aligned_cols=301  Identities=20%  Similarity=0.341  Sum_probs=254.8

Q ss_pred             ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC--CCcEE
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL--DSVCS  134 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~  134 (389)
                      +++.+.|..-.+.|+++.|+++|.+|++++.|.+++|||..+++.+.++..+...+..++|......++.++.  |.+|+
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence            4455667777889999999999999999999999999999999999999998888999999877777777666  88999


Q ss_pred             EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEe
Q 016458          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI  214 (389)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  214 (389)
                      ..++.+++       ..+.+.+|...|..++.+|-+ ..+++++.|++|++||++..++...+       +...-..+++
T Consensus        84 yLsl~dNk-------ylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l-------~~~~~pi~Af  148 (311)
T KOG1446|consen   84 YLSLHDNK-------YLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLL-------NLSGRPIAAF  148 (311)
T ss_pred             EEEeecCc-------eEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEE-------ecCCCcceeE
Confidence            99998866       789999999999999999987 68999999999999999988877766       2233445788


Q ss_pred             eCCCCcEEEEeeCCCceEEEeCCCC-CcceeEEee---eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeec
Q 016458          215 SGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFHG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ  290 (389)
Q Consensus       215 ~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  290 (389)
                      .| .+-++|++.....|++||+|.. +.+...+..   .....+.+.|+|||++|+.++..+.+++.|.-+|..+..+..
T Consensus       149 Dp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~  227 (311)
T KOG1446|consen  149 DP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG  227 (311)
T ss_pred             CC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee
Confidence            88 8888888888889999999976 345555543   356789999999999999999999999999999998888877


Q ss_pred             cCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEe
Q 016458          291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVN  370 (389)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  370 (389)
                      .......  -...+|+||++++++|+.||+|++|+++++..+..+.   ..+.+++.++.|+|.-..++++  +..+.+ 
T Consensus       228 ~~~~~~~--~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~---~~~~~~~~~~~fnP~~~mf~sa--~s~l~f-  299 (311)
T KOG1446|consen  228 YPNAGNL--PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR---GPNGGPVSCVRFNPRYAMFVSA--SSNLVF-  299 (311)
T ss_pred             ccCCCCc--ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec---CCCCCCccccccCCceeeeeec--CceEEE-
Confidence            6544322  2577899999999999999999999999999999984   2378999999999986666655  567777 


Q ss_pred             ecceecccCcccCc
Q 016458          371 LGFWRVQEGALSPW  384 (389)
Q Consensus       371 ~~~W~~~~~~~~~~  384 (389)
                         |=....++.+|
T Consensus       300 ---w~p~~~~~~~~  310 (311)
T KOG1446|consen  300 ---WLPDEDALPAH  310 (311)
T ss_pred             ---EeccccccCCC
Confidence               98888877765

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-39  Score=251.39  Aligned_cols=266  Identities=21%  Similarity=0.328  Sum_probs=244.2

Q ss_pred             cccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC-CCeeEEEeeCCCcEEEEEECCC
Q 016458           42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSPT  120 (389)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~  120 (389)
                      ..+.+.....|+..+.++.+.|+||.+.|..++|+..|++||+++.|=.+++||..+ .+++....+|...|.+++|-|.
T Consensus       125 ~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~  204 (406)
T KOG0295|consen  125 SASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPL  204 (406)
T ss_pred             EecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEec
Confidence            344567778899999999999999999999999999999999999998899999977 5677788899999999999999


Q ss_pred             CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc
Q 016458          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE  200 (389)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  200 (389)
                      |.++++++.|.+|+.|++.++-       +..++.+|...|..+..+.|| .++++++.|.+|++|-+.++++...+   
T Consensus       205 gd~ilS~srD~tik~We~~tg~-------cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~l---  273 (406)
T KOG0295|consen  205 GDHILSCSRDNTIKAWECDTGY-------CVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAEL---  273 (406)
T ss_pred             CCeeeecccccceeEEecccce-------eEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhh---
Confidence            9999999999999999999866       789999999999999999998 89999999999999999999888888   


Q ss_pred             ccCCCCCCeeEEEeeCC--------------CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEE
Q 016458          201 FQSGHTADVLSVSISGS--------------NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG  266 (389)
Q Consensus       201 ~~~~~~~~v~~~~~~~~--------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  266 (389)
                        ..|.-+|.+++|.|.              .+.++++++.|++|++||+.++ .++.++.+|.+.|..++|+|.|+||+
T Consensus       274 --R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~  350 (406)
T KOG0295|consen  274 --REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGHDNWVRGVAFSPGGKYIL  350 (406)
T ss_pred             --hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEecccceeeeeEEcCCCeEEE
Confidence              789999999999762              2358999999999999999998 89999999999999999999999999


Q ss_pred             EEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458          267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       267 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (389)
                      ++..|+++++||+++.++...+..+...     ++++.|..+..++++|+-|..+++|.-
T Consensus       351 ScaDDktlrvwdl~~~~cmk~~~ah~hf-----vt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  351 SCADDKTLRVWDLKNLQCMKTLEAHEHF-----VTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEecCCcEEEEEeccceeeeccCCCcce-----eEEEecCCCCceEEeccccceeeeeec
Confidence            9999999999999999999988765544     999999999999999999999999963

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.7e-39  Score=249.37  Aligned_cols=251  Identities=24%  Similarity=0.422  Sum_probs=231.9

Q ss_pred             CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC
Q 016458          100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG  179 (389)
Q Consensus       100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  179 (389)
                      +....+.+|.++|.|+++.|.+.+|++|+.|++|+|||+.+++       +..++.+|...|..+++++.. .++++++.
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-------LkltltGhi~~vr~vavS~rH-pYlFs~ge  213 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-------LKLTLTGHIETVRGVAVSKRH-PYLFSAGE  213 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-------EEEeecchhheeeeeeecccC-ceEEEecC
Confidence            3455678899999999999999999999999999999999977       778899999999999999986 69999999


Q ss_pred             CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEe
Q 016458          180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF  259 (389)
Q Consensus       180 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~  259 (389)
                      |+.|+.||++..+.+..+     .+|-+.|.+++.+| .-+.|++|+.|.++++||+++. ..+..+.+|..+|.++.+.
T Consensus       214 dk~VKCwDLe~nkvIR~Y-----hGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr-~~V~~l~GH~~~V~~V~~~  286 (460)
T KOG0285|consen  214 DKQVKCWDLEYNKVIRHY-----HGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTR-ASVHVLSGHTNPVASVMCQ  286 (460)
T ss_pred             CCeeEEEechhhhhHHHh-----ccccceeEEEeccc-cceeEEecCCcceEEEeeeccc-ceEEEecCCCCcceeEEee
Confidence            999999999999999998     89999999999999 7789999999999999999998 8899999999999999999


Q ss_pred             cCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC
Q 016458          260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ  339 (389)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  339 (389)
                      |-...+++|+.|++|++||++.++....+..+..     .+.+++.+|....+|+++.| .|+-|++..+..+..+    
T Consensus       287 ~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-----svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl----  356 (460)
T KOG0285|consen  287 PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-----SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL----  356 (460)
T ss_pred             cCCCceEEecCCceEEEeeeccCceeEeeecccc-----eeeEEecCCchhhhhccCCc-cceeccCCccchhhcc----
Confidence            9788899999999999999999999888876555     49999999999999999888 6999999999999887    


Q ss_pred             CCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458          340 NSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       340 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~  380 (389)
                      .+|...|.+++...|| ++++|+..|.+..    ||.++|-
T Consensus       357 sgh~~iintl~~nsD~-v~~~G~dng~~~f----wdwksg~  392 (460)
T KOG0285|consen  357 SGHNAIINTLSVNSDG-VLVSGGDNGSIMF----WDWKSGH  392 (460)
T ss_pred             ccccceeeeeeeccCc-eEEEcCCceEEEE----EecCcCc
Confidence            8999999999998877 7889999999998    9999884

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=5.2e-39  Score=238.56  Aligned_cols=290  Identities=20%  Similarity=0.329  Sum_probs=255.6

Q ss_pred             ecccccCcEEEEEEcC---CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeC
Q 016458           62 TLQGHAGKVYSLDWTS---ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL  138 (389)
Q Consensus        62 ~l~~h~~~v~~~~~~~---~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~  138 (389)
                      +..||+.+|..++|+|   +|-+|++++.||.-.+-+-++|.-+.++.+|.+.|.....+.+....++++.|-+-++||.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            5679999999999986   8889999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee-EEEecCcccCCCCCCeeEEEeeCC
Q 016458          139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSISGS  217 (389)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~  217 (389)
                      -++.       .... ..|+.-|..++|+.+. ++|++|+.+..++|||++..+. ...+     .+|.+.|..+.|.. 
T Consensus        89 ~tgd-------elhs-f~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App~E~-----~ghtg~Ir~v~wc~-  153 (334)
T KOG0278|consen   89 VTGD-------ELHS-FEHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPKEI-----SGHTGGIRTVLWCH-  153 (334)
T ss_pred             hhhh-------hhhh-hhhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCchhh-----cCCCCcceeEEEec-
Confidence            8765       2333 3478889999999997 7899999999999999987643 3333     68999999999998 


Q ss_pred             CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCC
Q 016458          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI  297 (389)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  297 (389)
                      ..+.+++++.|++|++||.+++ ..++.+. .+.+|+++.++++|++|.++ ..+.|.+||..+...+..+..+..    
T Consensus       154 eD~~iLSSadd~tVRLWD~rTg-t~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~n----  226 (334)
T KOG0278|consen  154 EDKCILSSADDKTVRLWDHRTG-TEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCN----  226 (334)
T ss_pred             cCceEEeeccCCceEEEEeccC-cEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccc----
Confidence            6778888899999999999998 6666665 56789999999999877665 457899999999988888766553    


Q ss_pred             CCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                        |.+..++|+...+++|+.|+.++.||..++..+..+.   .+|.++|.|+.|+|||...++|+.||+|++    |.+.
T Consensus       227 --V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n---kgh~gpVhcVrFSPdGE~yAsGSEDGTirl----WQt~  297 (334)
T KOG0278|consen  227 --VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN---KGHFGPVHCVRFSPDGELYASGSEDGTIRL----WQTT  297 (334)
T ss_pred             --cccccccCCCceEEecCcceEEEEEeccCCceeeecc---cCCCCceEEEEECCCCceeeccCCCceEEE----EEec
Confidence              8999999999999999999999999999999888753   799999999999999999999999999999    9999


Q ss_pred             cCccc
Q 016458          378 EGALS  382 (389)
Q Consensus       378 ~~~~~  382 (389)
                      .++..
T Consensus       298 ~~~~~  302 (334)
T KOG0278|consen  298 PGKTY  302 (334)
T ss_pred             CCCch
Confidence            88765

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=8.3e-40  Score=254.07  Aligned_cols=281  Identities=24%  Similarity=0.398  Sum_probs=240.3

Q ss_pred             ccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (389)
Q Consensus        66 h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (389)
                      ....|+|+.+..  ..+++|..|++|+|||..+......+.+|.+.|.|+.|.  .+.+++|+.|.+|+|||++++.   
T Consensus       196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge---  268 (499)
T KOG0281|consen  196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE---  268 (499)
T ss_pred             cCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc---
Confidence            456799999854  489999999999999999999999999999999999985  5699999999999999999876   


Q ss_pred             CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG  225 (389)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  225 (389)
                          +..++..|...|..+.|+.   .++++++.|.++.+||+.....+...  ....+|...|+.+.|+.   ++++++
T Consensus       269 ----~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~r--rVLvGHrAaVNvVdfd~---kyIVsA  336 (499)
T KOG0281|consen  269 ----PLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLR--RVLVGHRAAVNVVDFDD---KYIVSA  336 (499)
T ss_pred             ----hhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHH--HHHhhhhhheeeecccc---ceEEEe
Confidence                7788899999999999985   58999999999999999876532211  11268999999999964   599999


Q ss_pred             eCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEe
Q 016458          226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF  305 (389)
Q Consensus       226 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (389)
                      +.|.+|++|++.+. ..++.+.+|...|-|+.+  .++++++|+.|.+|++||+..|.++..+..+...     |.++.|
T Consensus       337 SgDRTikvW~~st~-efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeL-----vRciRF  408 (499)
T KOG0281|consen  337 SGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL-----VRCIRF  408 (499)
T ss_pred             cCCceEEEEeccce-eeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHh-----hhheee
Confidence            99999999999988 899999999999999988  6889999999999999999999999988766554     999999


Q ss_pred             CCCCCEEEEEecCCcEEEEEcccceEEEeecC-----cCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458          306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS-----LQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~  380 (389)
                        |.+.+++|..||+|+|||+..+........     ....|.+.|..+.|.  ...+++++.|.+|-|    ||+.++.
T Consensus       409 --d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILi----WdFl~~~  480 (499)
T KOG0281|consen  409 --DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILI----WDFLNGP  480 (499)
T ss_pred             --cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEE----EEcCCCC
Confidence              567899999999999999987654321110     015688999999995  557999999999999    9998774


Q ss_pred             c
Q 016458          381 L  381 (389)
Q Consensus       381 ~  381 (389)
                      .
T Consensus       481 ~  481 (499)
T KOG0281|consen  481 P  481 (499)
T ss_pred             c
Confidence            3

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-37  Score=264.79  Aligned_cols=293  Identities=22%  Similarity=0.387  Sum_probs=257.8

Q ss_pred             eecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458           61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS  140 (389)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~  140 (389)
                      -++.||+..|.++++|.+...+++|+. +.+++|+..+.++++++...  .+.+..|.|.++++++|..+|.+.+||+.+
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS  443 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS  443 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence            367799999999999999877887765 58999999999999988755  789999999999999999999999999987


Q ss_pred             CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-----ee--EEEecCcccCCCCCCeeEEE
Q 016458          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-----LR--TSVFGGEFQSGHTADVLSVS  213 (389)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~--~~~~~~~~~~~~~~~v~~~~  213 (389)
                      ..       .......|.+.|++++.+|++ ..+++|+.|.+|++||..--     ..  ...+...........|.|+.
T Consensus       444 ~~-------l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~  515 (888)
T KOG0306|consen  444 AS-------LVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS  515 (888)
T ss_pred             hh-------hhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE
Confidence            55       566777999999999999998 68999999999999997421     11  11111111124567899999


Q ss_pred             eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC
Q 016458          214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG  293 (389)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  293 (389)
                      ++| ++.+|+++--|.++++|-+++. +....+.+|.-||.|+..+||++.+++|+.|..|++|-+.-|.+-..+..+..
T Consensus       516 ~Sp-dgk~LaVsLLdnTVkVyflDtl-KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD  593 (888)
T KOG0306|consen  516 VSP-DGKLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD  593 (888)
T ss_pred             EcC-CCcEEEEEeccCeEEEEEecce-eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC
Confidence            999 9999999999999999999988 77888999999999999999999999999999999999999998888866554


Q ss_pred             CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecc
Q 016458          294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGF  373 (389)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~  373 (389)
                           .|+++.|-|...++++++.|+.|+-||-...+.+..+    .+|...|.|++.+|+|.++++++.|..|++    
T Consensus       594 -----Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L----~~H~~ev~cLav~~~G~~vvs~shD~sIRl----  660 (888)
T KOG0306|consen  594 -----SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL----DGHHSEVWCLAVSPNGSFVVSSSHDKSIRL----  660 (888)
T ss_pred             -----ceeEEEEcccceeEEEecCcceEEeechhhhhhheee----ccchheeeeeEEcCCCCeEEeccCCceeEe----
Confidence                 4999999999999999999999999999999999999    899999999999999999999999999999    


Q ss_pred             eecccC
Q 016458          374 WRVQEG  379 (389)
Q Consensus       374 W~~~~~  379 (389)
                      |.....
T Consensus       661 wE~tde  666 (888)
T KOG0306|consen  661 WERTDE  666 (888)
T ss_pred             eeccCc
Confidence            987653

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-37  Score=238.33  Aligned_cols=307  Identities=23%  Similarity=0.365  Sum_probs=259.8

Q ss_pred             cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEE
Q 016458           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI  135 (389)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  135 (389)
                      ..++.+.|.||++.|..++.....+.+.+++.|.+.+||.++++.++..+.+|.+.|++++|++.+.++++++.|++.+|
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI  216 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI  216 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence            46778889999999999999888889999999999999999999999999999999999999999999999999999999


Q ss_pred             Ee------CCCCCC------------------------CC---CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe
Q 016458          136 FN------LNSPTD------------------------KD---GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT  182 (389)
Q Consensus       136 w~------~~~~~~------------------------~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  182 (389)
                      |.      +..+..                        ..   .-......+.+|.+.|.+..|...+ ..+++++.|.+
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRT  295 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVTASWDRT  295 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeeeeecccc
Confidence            97      222110                        00   0011344677899999999999887 68999999999


Q ss_pred             EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC
Q 016458          183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG  262 (389)
Q Consensus       183 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (389)
                      ..+||++++..+..+     .+|....+.++-+| ..+++++++.|.+.++||++..-..+..|.+|...|+++.|..+ 
T Consensus       296 AnlwDVEtge~v~~L-----tGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-  368 (481)
T KOG0300|consen  296 ANLWDVETGEVVNIL-----TGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-  368 (481)
T ss_pred             ceeeeeccCceeccc-----cCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-
Confidence            999999999999999     89999999999999 89999999999999999999776778899999999999999865 


Q ss_pred             CEEEEEecCCeEEEEECCCCcee-eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCC
Q 016458          263 NRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS  341 (389)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  341 (389)
                      ..+++|+.|.+|++||+++.+.. .++...      .+++.++.+..++.++.--.+..|++||+..............+
T Consensus       369 d~vVSgSDDrTvKvWdLrNMRsplATIRtd------S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqg  442 (481)
T KOG0300|consen  369 DRVVSGSDDRTVKVWDLRNMRSPLATIRTD------SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQG  442 (481)
T ss_pred             CceeecCCCceEEEeeeccccCcceeeecC------CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccc
Confidence            46999999999999999986644 333332      24899999999999999999999999999655443333233478


Q ss_pred             CCCCeeEEEECCCC--CeEEeeeCCCeeEEeecceecccCc
Q 016458          342 HEGRITCLGLSADG--SALCTGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       342 ~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~~~~W~~~~~~  380 (389)
                      |...|+|.+|..+-  .-|+++|-|..+.-    |++...+
T Consensus       443 HrRMV~c~AW~eehp~cnLftcGFDR~v~g----W~in~p~  479 (481)
T KOG0300|consen  443 HRRMVTCCAWLEEHPACNLFTCGFDRMVAG----WKINTPT  479 (481)
T ss_pred             cceeeeeeeccccCcccccccccccceeee----eEecccC
Confidence            99999999998642  45889999999999    9987654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.6e-38  Score=269.65  Aligned_cols=286  Identities=20%  Similarity=0.330  Sum_probs=251.8

Q ss_pred             ecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCC
Q 016458           62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP  141 (389)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  141 (389)
                      .|..-+..|..++|+|...+++++-..|.|++||.+-+..+..+..|.++|..++|+|++.++++|+.|-.|+||+..+.
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r   83 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR   83 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence            45556778999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcE
Q 016458          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM  221 (389)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  221 (389)
                      +       +..++.+|-+.|..+.|++.- ..+++++.|.+|+||+..+.+++..+     .+|...|+|..|+| ...+
T Consensus        84 r-------clftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavl-----tGHnHYVMcAqFhp-tEDl  149 (1202)
T KOG0292|consen   84 R-------CLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVL-----TGHNHYVMCAQFHP-TEDL  149 (1202)
T ss_pred             e-------ehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEE-----ecCceEEEeeccCC-ccce
Confidence            6       788899999999999999986 68999999999999999999999999     89999999999999 7889


Q ss_pred             EEEeeCCCceEEEeCCCCC----------------------------cceeEEeeeccceEEEEEecCCCEEEEEecCCe
Q 016458          222 FVSGSCDSTARLWDTRVAS----------------------------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  273 (389)
Q Consensus       222 l~~~~~dg~i~i~d~~~~~----------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  273 (389)
                      +++++-|.+|++||+....                            -....+.+|...|+-++|+|.-.+|++|+.|..
T Consensus       150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq  229 (1202)
T KOG0292|consen  150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ  229 (1202)
T ss_pred             EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce
Confidence            9999999999999985210                            112356789999999999999999999999999


Q ss_pred             EEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458          274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (389)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (389)
                      |++|.+...+.-.   .....+|...|+++.|+|...++++.+.|+.|+|||+...+.+.++    ....+....++-+|
T Consensus       230 VKlWrmnetKaWE---vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf----rrendRFW~laahP  302 (1202)
T KOG0292|consen  230 VKLWRMNETKAWE---VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF----RRENDRFWILAAHP  302 (1202)
T ss_pred             eeEEEecccccee---ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee----eccCCeEEEEEecC
Confidence            9999987644322   2222445556999999999999999999999999999999999998    56677899999999


Q ss_pred             CCCeEEeeeCCCeeEE
Q 016458          354 DGSALCTGSWDTNLKV  369 (389)
Q Consensus       354 ~~~~l~~~~~dg~i~i  369 (389)
                      ..+++++|.+.| +.|
T Consensus       303 ~lNLfAAgHDsG-m~V  317 (1202)
T KOG0292|consen  303 ELNLFAAGHDSG-MIV  317 (1202)
T ss_pred             CcceeeeecCCc-eEE
Confidence            998777666555 445

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.4e-39  Score=251.52  Aligned_cols=269  Identities=25%  Similarity=0.449  Sum_probs=233.4

Q ss_pred             cccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECC
Q 016458           40 GYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP  119 (389)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~  119 (389)
                      ..+...+...+.|+.....+.+.|.||++.|.|+.|..  +.+++|+.|.+|++||+++++++.++-.|.+.|..+.|+ 
T Consensus       210 iVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-  286 (499)
T KOG0281|consen  210 IVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-  286 (499)
T ss_pred             hhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-
Confidence            34556677888999999999999999999999999965  499999999999999999999999999999999999996 


Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC
Q 016458          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG  199 (389)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  199 (389)
                       +.++++++.|.+|.+||+..+.    ...+...+.+|...|+.+.|+.   +++++++.|.+|++|++.+++.+..+  
T Consensus       287 -ng~mvtcSkDrsiaVWdm~sps----~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl--  356 (499)
T KOG0281|consen  287 -NGYMVTCSKDRSIAVWDMASPT----DITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTL--  356 (499)
T ss_pred             -CCEEEEecCCceeEEEeccCch----HHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhh--
Confidence             6789999999999999999855    3446677889999999999975   59999999999999999999999999  


Q ss_pred             cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEEC
Q 016458          200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI  279 (389)
Q Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  279 (389)
                         .+|...|-|+.+   +++++++|+.|.+|++||+..+ .+++.+.+|+.-|.++.|  |.+.+++|+.||+|++||+
T Consensus       357 ---~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl  427 (499)
T KOG0281|consen  357 ---NGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL  427 (499)
T ss_pred             ---hcccccceehhc---cCeEEEecCCCceEEEEecccc-HHHHHHhchHHhhhheee--cCceeeeccccceEEEEec
Confidence               899999999887   6689999999999999999988 899999999999999999  5778999999999999999


Q ss_pred             CCCceeeEe----eccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE
Q 016458          280 RTGHQLQVY----YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  332 (389)
Q Consensus       280 ~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  332 (389)
                      ..+......    ...+...+.+.|..+.|  |...+++++.|.+|.|||+.++.+-
T Consensus       428 ~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  428 QAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             ccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence            876544221    11112234446888888  5667888899999999999876554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.1e-37  Score=249.67  Aligned_cols=279  Identities=24%  Similarity=0.386  Sum_probs=241.8

Q ss_pred             cCcEEEEEEcCCCCe-EEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458           67 AGKVYSLDWTSERNR-IVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~-l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (389)
                      .++|++++|+|..++ +|+++. -.+.||+..+......+......|.++.|..||++|++|...|.|+|||..+..   
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~---  101 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV---  101 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHH---
Confidence            357999999996543 454444 479999998888877777777789999999999999999999999999966532   


Q ss_pred             CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG  225 (389)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  225 (389)
                          ....+.+|..++..+.|+|+++..+++|+.|+.+++||+.+......+     .+|.+.|.+.+|+|.++.++++|
T Consensus       102 ----iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l-----~~htDYVR~g~~~~~~~hivvtG  172 (487)
T KOG0310|consen  102 ----ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL-----SGHTDYVRCGDISPANDHIVVTG  172 (487)
T ss_pred             ----HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe-----cCCcceeEeeccccCCCeEEEec
Confidence                677889999999999999999899999999999999999999875566     79999999999999888899999


Q ss_pred             eCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEe
Q 016458          226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF  305 (389)
Q Consensus       226 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (389)
                      +.||.|++||++.....+..+. |..+|..+.+-|.|..+++++. ..|++||+.+|.........    |...|+|+++
T Consensus       173 sYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~----H~KtVTcL~l  246 (487)
T KOG0310|consen  173 SYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFN----HNKTVTCLRL  246 (487)
T ss_pred             CCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhc----ccceEEEEEe
Confidence            9999999999998755555554 9999999999999999999876 48999999976655444332    3335999999


Q ss_pred             CCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      ..++..|++|+-|+.+++||+.+.+.+..+     .-.++|.+++.+|+++.++.|..||.+.+
T Consensus       247 ~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-----~~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  247 ASDSTRLLSGSLDRHVKVFDTTNYKVVHSW-----KYPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             ecCCceEeecccccceEEEEccceEEEEee-----ecccceeeEEecCCCceEEEecccceeee
Confidence            999999999999999999999999999887     45789999999999999999999999987

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=6e-37  Score=228.94  Aligned_cols=278  Identities=19%  Similarity=0.241  Sum_probs=241.2

Q ss_pred             eecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEE--EeeCCCcEEEEEECC-CCcEEEEecCCCcEEEEe
Q 016458           61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA--IKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFN  137 (389)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~  137 (389)
                      +.+++|...|.+++|+.+|..|++|+.|+++.+|+++..+....  ..+|.+.|-.++|+| +...+++++.|..|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            67889999999999999999999999999999999987765443  457888899999988 667899999999999999


Q ss_pred             CCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC
Q 016458          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS  217 (389)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  217 (389)
                      +..++       +........+. .-+.|+|+| .+++.++.|..|.+.|.++.+.....      .....+..++|+. 
T Consensus        94 ~r~~k-------~~~~i~~~~en-i~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~------~~~~e~ne~~w~~-  157 (313)
T KOG1407|consen   94 IRSGK-------CTARIETKGEN-INITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEE------QFKFEVNEISWNN-  157 (313)
T ss_pred             eccCc-------EEEEeeccCcc-eEEEEcCCC-CEEEEecCcccEEEEEecccceeehh------cccceeeeeeecC-
Confidence            99865       44444433333 457899998 78999999999999999988877765      4556788899995 


Q ss_pred             CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCC
Q 016458          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI  297 (389)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  297 (389)
                      .+++++.....|.|.|...... +++..+++|.....||.|+|+|++|++|+.|..+.+||+...-+.+.+....-    
T Consensus       158 ~nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw----  232 (313)
T KOG1407|consen  158 SNDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW----  232 (313)
T ss_pred             CCCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC----
Confidence            6677776666799999999877 89999999999999999999999999999999999999998888888766554    


Q ss_pred             CCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458          298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (389)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  365 (389)
                       +|..+.||.+|++||++++|-.|-|=++++|..+..+     .+.++...++|+|...+||-++.|.
T Consensus       233 -pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI-----~~~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  233 -PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI-----PCEGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             -ceEEEEeccCcceeeccCccceEEeEecccCCeEEEe-----eccCCceeEEecCCCceeeEEecCC
Confidence             4999999999999999999999999999999999998     5788999999999999999888763

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=3.1e-37  Score=251.37  Aligned_cols=311  Identities=18%  Similarity=0.241  Sum_probs=248.1

Q ss_pred             ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCe----eEEE-eeCCCcEEEEEECCCCcEEEEecCCC
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK----THAI-KLPCAWVMTCAFSPTGQSVACGGLDS  131 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~----~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg  131 (389)
                      ......|++|+..|+++++.|.|-+|++|+.|.+|++||+.....    ...+ ......|.+++|++.|..|++.+...
T Consensus       157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a  236 (641)
T KOG0772|consen  157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA  236 (641)
T ss_pred             ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence            345567899999999999999999999999999999999865322    1122 23446799999999999999999999


Q ss_pred             cEEEEeCCCCCC-----CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEecCcccCCC
Q 016458          132 VCSIFNLNSPTD-----KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGH  205 (389)
Q Consensus       132 ~i~vw~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~  205 (389)
                      ..+|+|-+....     ....+.-....++|...++|.+|+|.....|++++.||++++||+...+ ....+......+.
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~  316 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK  316 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence            999999876331     1122223445678999999999999998999999999999999998753 3444444444566


Q ss_pred             CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC--cceeEEeeecc--ceEEEEEecCCCEEEEEecCCeEEEEECCC
Q 016458          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT  281 (389)
Q Consensus       206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  281 (389)
                      .-++++++|++ ++++|++|+.||.|.+|+.+...  .....-.+|..  .|+||.||++|++|++-+.|+++++||++.
T Consensus       317 Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq  395 (641)
T KOG0772|consen  317 RVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ  395 (641)
T ss_pred             ccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence            67899999999 88899999999999999976432  23344567877  899999999999999999999999999998


Q ss_pred             CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec------CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458          282 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (389)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (389)
                      .+........  .....+-+.++|||+.++|++|+.      .|.+.+||..+...+..+    ......|..+.|+|.-
T Consensus       396 ~kkpL~~~tg--L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki----~i~~aSvv~~~WhpkL  469 (641)
T KOG0772|consen  396 FKKPLNVRTG--LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI----DISTASVVRCLWHPKL  469 (641)
T ss_pred             cccchhhhcC--CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe----cCCCceEEEEeecchh
Confidence            6644332221  222234688999999999999864      568999999999999888    4557789999999998


Q ss_pred             CeEEeeeCCCeeEEeecceecc
Q 016458          356 SALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       356 ~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      +.|.+|+.||.++|   +||..
T Consensus       470 NQi~~gsgdG~~~v---yYdp~  488 (641)
T KOG0772|consen  470 NQIFAGSGDGTAHV---YYDPN  488 (641)
T ss_pred             hheeeecCCCceEE---EECcc
Confidence            89999999999999   46654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-37  Score=255.89  Aligned_cols=261  Identities=21%  Similarity=0.328  Sum_probs=237.7

Q ss_pred             CCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE
Q 016458           46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA  125 (389)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  125 (389)
                      .+....|+-.+...++.+.-..-||.+..|-+..+++++|+.|..|+||+..+++.+..+..|...|.+++.+|...+++
T Consensus        34 nG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vL  113 (794)
T KOG0276|consen   34 NGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVL  113 (794)
T ss_pred             cCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEE
Confidence            34456788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCC
Q 016458          126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH  205 (389)
Q Consensus       126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  205 (389)
                      +++.|-.|++||.+.      .+.+.+++.+|...|.+++|+|...+.+++++-|++|++|.+.+..+..++     .+|
T Consensus       114 tsSDDm~iKlW~we~------~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl-----~gH  182 (794)
T KOG0276|consen  114 TSSDDMTIKLWDWEN------EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL-----EGH  182 (794)
T ss_pred             ecCCccEEEEeeccC------ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee-----ecc
Confidence            999999999999986      667889999999999999999998899999999999999999999999998     799


Q ss_pred             CCCeeEEEeeCC-CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458          206 TADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ  284 (389)
Q Consensus       206 ~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  284 (389)
                      ...|+++++.+. +..+|++|+.|.++++||..+. .+++++.+|...|..+.|+|.-.++++|+.||+++||...+.+.
T Consensus       183 ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  183 EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL  261 (794)
T ss_pred             ccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence            999999999873 3459999999999999999987 89999999999999999999999999999999999999888777


Q ss_pred             eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEE
Q 016458          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV  323 (389)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (389)
                      ...+.....     .+.+++-.+.++.+++|..+|.|.+
T Consensus       262 E~tLn~gle-----RvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  262 EKTLNYGLE-----RVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             hhhhhcCCc-----eEEEEeecCCCCeEEEeccCCcEEE
Confidence            666655444     3899998888888999888776543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.5e-38  Score=241.64  Aligned_cols=285  Identities=22%  Similarity=0.377  Sum_probs=250.4

Q ss_pred             cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe--------eCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--------LPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (389)
                      |.+..+-|..|+|||++|++|+.||.|.+||..+|+....++        -+..+|.|+.|+.|...+++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            455678899999999999999999999999999987654433        356789999999999999999999999999


Q ss_pred             eCCCCCCCCCCCcceeeec-ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458          137 NLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  215 (389)
                      .+.++.       +.+.+. .|...|+|+.|+.++ ..+++++.|.++++--+.+|+++..+     .+|.+.|+...|.
T Consensus       291 ri~tG~-------ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEf-----rGHsSyvn~a~ft  357 (508)
T KOG0275|consen  291 RIETGQ-------CLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEF-----RGHSSYVNEATFT  357 (508)
T ss_pred             EEecch-------HHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHh-----cCccccccceEEc
Confidence            999876       555554 899999999999998 67999999999999999999999999     8999999999999


Q ss_pred             CCCCcEEEEeeCCCceEEEeCCCCCcceeEEee--eccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEeeccC
Q 016458          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH  292 (389)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  292 (389)
                      + +++.+++++.||+|++|+.++. .++.+++.  ...+|+++..-| +...++++...++|++.++. |+.+..+....
T Consensus       358 ~-dG~~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGk  434 (508)
T KOG0275|consen  358 D-DGHHIISASSDGTVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK  434 (508)
T ss_pred             C-CCCeEEEecCCccEEEecCcch-hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCC
Confidence            8 9999999999999999999987 77777764  345788888877 56688899999999999976 66677665543


Q ss_pred             CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeec
Q 016458          293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLG  372 (389)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~  372 (389)
                      .  ..+...+.+.+|.|.++++.+.|+.++.|.+.+|+...++    ..|+..|..++-+|..+.|++-+.||.+++   
T Consensus       435 R--EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl----~VhEkdvIGl~HHPHqNllAsYsEDgllKL---  505 (508)
T KOG0275|consen  435 R--EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL----PVHEKDVIGLTHHPHQNLLASYSEDGLLKL---  505 (508)
T ss_pred             c--cCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee----ecccccccccccCcccchhhhhcccchhhh---
Confidence            2  2334677889999999999999999999999999999999    789999999999999999999999999999   


Q ss_pred             cee
Q 016458          373 FWR  375 (389)
Q Consensus       373 ~W~  375 (389)
                       |.
T Consensus       506 -Wk  507 (508)
T KOG0275|consen  506 -WK  507 (508)
T ss_pred             -cC
Confidence             95

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.7e-37  Score=227.80  Aligned_cols=282  Identities=23%  Similarity=0.348  Sum_probs=232.3

Q ss_pred             EEEEEcC-CCCeEEEEe-------cCCcEEEEeCCCCCeeEEEee--CCCcEEEEEECCC-CcEEEEecCCCcEEEEeCC
Q 016458           71 YSLDWTS-ERNRIVSAS-------QDGRLIVWNALTSQKTHAIKL--PCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLN  139 (389)
Q Consensus        71 ~~~~~~~-~~~~l~~~~-------~dg~v~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~-~~~l~~~~~dg~i~vw~~~  139 (389)
                      .++.||| -.++||++.       ..|++.|-++..++-+.....  -...+..++|+++ .+.+++++.||.+++||+.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            5788999 233444432       468899999865554444432  3456999999995 4677888999999999966


Q ss_pred             CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (389)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (389)
                      .+.      .++..++.|...|.++.|++.....+++++.|++|++|+...+..+.++     .+|...|....|+|..+
T Consensus        92 ~~s------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-----~gh~~~Iy~a~~sp~~~  160 (311)
T KOG0277|consen   92 MPS------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-----NGHNSCIYQAAFSPHIP  160 (311)
T ss_pred             CCC------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-----cCCccEEEEEecCCCCC
Confidence            533      2677889999999999999988788999999999999999999999998     79999999999999999


Q ss_pred             cEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCC
Q 016458          220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP  298 (389)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  298 (389)
                      +++++++.|+.+++||++..++.+. +..|...+.++.|+. +...+++|+.|+.|++||++..+......    ..+..
T Consensus       161 nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL----~gh~~  235 (311)
T KOG0277|consen  161 NLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL----NGHGL  235 (311)
T ss_pred             CeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee----cCCce
Confidence            9999999999999999999855554 889999999999998 77789999999999999999865432222    23344


Q ss_pred             CeeEEEeCCCC-CEEEEEecCCcEEEEEcccceE-EEeecCcCCCCCCCeeEEEECC-CCCeEEeeeCCCeeEEeeccee
Q 016458          299 HVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKVNLGFWR  375 (389)
Q Consensus       299 ~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~W~  375 (389)
                      .|..+.|||.. ..|++++.|-+++|||...... +.+.    ..|..-|..+.|++ ++.++|+++.|+.++|    |+
T Consensus       236 AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~----~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~V----w~  307 (311)
T KOG0277|consen  236 AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV----DHHTEFVCGLDWSLFDPGQVASTGWDELLYV----WN  307 (311)
T ss_pred             EEEEEecCcchhhHhhhccccceEEecccccchhhhhhh----hccceEEeccccccccCceeeecccccceee----ec
Confidence            69999999965 4889999999999999885443 3334    67889999999998 7789999999999999    98


Q ss_pred             c
Q 016458          376 V  376 (389)
Q Consensus       376 ~  376 (389)
                      .
T Consensus       308 p  308 (311)
T KOG0277|consen  308 P  308 (311)
T ss_pred             c
Confidence            4

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.7e-36  Score=254.86  Aligned_cols=317  Identities=21%  Similarity=0.310  Sum_probs=260.0

Q ss_pred             CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458           45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV  124 (389)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  124 (389)
                      .++....|+........+|.||+.+|+++.|+..|.+|++||.|+.|.+||+-...-...+.+|...|+..-|....+++
T Consensus        85 aDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~l  164 (888)
T KOG0306|consen   85 ADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFL  164 (888)
T ss_pred             cCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEE
Confidence            34566677777667888999999999999999999999999999999999998877788888888888887777777777


Q ss_pred             EEecCCCcEEEEeCCCCC--------------------------------------------------------------
Q 016458          125 ACGGLDSVCSIFNLNSPT--------------------------------------------------------------  142 (389)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~--------------------------------------------------------------  142 (389)
                      ++.+.|+.|++||+++..                                                              
T Consensus       165 vS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk  244 (888)
T KOG0306|consen  165 VSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSK  244 (888)
T ss_pred             EEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccC
Confidence            777788888888877643                                                              


Q ss_pred             --------------------------------------------------------------------------------
Q 016458          143 --------------------------------------------------------------------------------  142 (389)
Q Consensus       143 --------------------------------------------------------------------------------  142 (389)
                                                                                                      
T Consensus       245 ~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kik  324 (888)
T KOG0306|consen  245 GREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIK  324 (888)
T ss_pred             CceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhhee
Confidence                                                                                            


Q ss_pred             ------CCCCC---------------------------CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          143 ------DKDGN---------------------------LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       143 ------~~~~~---------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                            .....                           ......+.+|...|.+++++.+.  .++..+..+.+++|+..
T Consensus       325 s~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~--~~~~Sga~~SikiWn~~  402 (888)
T KOG0306|consen  325 SFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS--ILLASGAGESIKIWNRD  402 (888)
T ss_pred             EEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc--eeeeecCCCcEEEEEcc
Confidence                  00000                           00012355788899999999865  45556667899999999


Q ss_pred             CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe
Q 016458          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  269 (389)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  269 (389)
                      +.+++.++.       ...+.+..|.| +++++++|...|.+.+||+.+. ..+....+|.+.|..++.+||+..+++|+
T Consensus       403 t~kciRTi~-------~~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AHdgaIWsi~~~pD~~g~vT~s  473 (888)
T KOG0306|consen  403 TLKCIRTIT-------CGYILASKFVP-GDRYIVLGTKNGELQVFDLASA-SLVETIRAHDGAIWSISLSPDNKGFVTGS  473 (888)
T ss_pred             CcceeEEec-------cccEEEEEecC-CCceEEEeccCCceEEEEeehh-hhhhhhhccccceeeeeecCCCCceEEec
Confidence            999999982       23789999999 8899999999999999999987 78888889999999999999999999999


Q ss_pred             cCCeEEEEECCC-----CceeeEeecc--CCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCC
Q 016458          270 DDGTCRLFDIRT-----GHQLQVYYQQ--HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH  342 (389)
Q Consensus       270 ~dg~i~i~d~~~-----~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  342 (389)
                      .|.+|++||..-     +.....+...  ..-.-...|.++.+||||++|+++--|+++.||-+.+.+....+    .+|
T Consensus       474 aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL----YGH  549 (888)
T KOG0306|consen  474 ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL----YGH  549 (888)
T ss_pred             CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee----ccc
Confidence            999999999642     1111111111  11112234999999999999999999999999999999999998    899


Q ss_pred             CCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458          343 EGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       343 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~  380 (389)
                      .-||.||..+||++.++|||.|..|+|    |-++-|.
T Consensus       550 kLPV~smDIS~DSklivTgSADKnVKi----WGLdFGD  583 (888)
T KOG0306|consen  550 KLPVLSMDISPDSKLIVTGSADKNVKI----WGLDFGD  583 (888)
T ss_pred             ccceeEEeccCCcCeEEeccCCCceEE----eccccch
Confidence            999999999999999999999999999    9988764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=4e-36  Score=230.18  Aligned_cols=300  Identities=20%  Similarity=0.298  Sum_probs=249.5

Q ss_pred             eecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC------------C------CeeEEEeeCCCcEEEEEECCCCc
Q 016458           61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT------------S------QKTHAIKLPCAWVMTCAFSPTGQ  122 (389)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~  122 (389)
                      ..+..|++++.+.+|+|||.++|||+.|..|+|.|++.            +      -.++++-.|...|+++.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            35678999999999999999999999999999999851            1      23556667889999999999999


Q ss_pred             EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCccc
Q 016458          123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ  202 (389)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  202 (389)
                      .|++|+.|++|++||+.....+     ..........+|.++.|+|.| .+++.|.....+++||+++-++.....+.  
T Consensus       186 ILiS~srD~tvKlFDfsK~saK-----rA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd--  257 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAK-----RAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPD--  257 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHH-----HHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecCcc--
Confidence            9999999999999999864311     111122345689999999998 68999999999999999998887665433  


Q ss_pred             CCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-eecc-ceEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458          203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDIR  280 (389)
Q Consensus       203 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  280 (389)
                      ..|.+.|+++.+++ .+++.++++.||.|++||--+. +++.++. +|.+ .|.+..|..+++++++.+.|..+++|.+.
T Consensus       258 ~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  258 DQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             cccccceeEEEecC-CccEEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence            68999999999998 8999999999999999998776 6666654 4654 68999999999999999999999999999


Q ss_pred             CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec-CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEE
Q 016458          281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC  359 (389)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  359 (389)
                      +++.+..+...........-+...|+....|++.-.+ .+.+.-||.++......+.   .+|.+.+..+.-||.+.-++
T Consensus       336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s---lgHn~a~R~i~HSP~~p~Fm  412 (430)
T KOG0640|consen  336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS---LGHNGAVRWIVHSPVEPAFM  412 (430)
T ss_pred             CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc---cCCCCCceEEEeCCCCCcee
Confidence            9999999877543333333566778888777776543 5689999999887776654   69999999999999999999


Q ss_pred             eeeCCCeeEEeecceecc
Q 016458          360 TGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       360 ~~~~dg~i~i~~~~W~~~  377 (389)
                      +|+.|-.+++    |--.
T Consensus       413 TcsdD~raRF----Wyrr  426 (430)
T KOG0640|consen  413 TCSDDFRARF----WYRR  426 (430)
T ss_pred             eecccceeee----eeec
Confidence            9999999999    8643

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.8e-36  Score=240.21  Aligned_cols=286  Identities=27%  Similarity=0.427  Sum_probs=243.0

Q ss_pred             eeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeE-E----------------E-eeCCCcEEEEEECCCC
Q 016458           60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH-A----------------I-KLPCAWVMTCAFSPTG  121 (389)
Q Consensus        60 ~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~-~----------------~-~~~~~~v~~~~~~~~~  121 (389)
                      .+.+..|.-+|.|++++|++++.++++.||+|.-|++.+++... .                - ..|...+.+++.+++|
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            67888999999999999999999999999999999998776431 1                0 2566789999999999


Q ss_pred             cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc
Q 016458          122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (389)
Q Consensus       122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  201 (389)
                      ++|++|+.|..|.||+.++..       ....+.+|.+.|.+++|-... ..+++++.|+.|++|++.....+.++    
T Consensus       215 kylatgg~d~~v~Iw~~~t~e-------hv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetl----  282 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLE-------HVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETL----  282 (479)
T ss_pred             cEEEecCCCceEEEecCcccc-------hhhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHH----
Confidence            999999999999999999865       567789999999999998764 78999999999999999998888888    


Q ss_pred             cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCC
Q 016458          202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT  281 (389)
Q Consensus       202 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  281 (389)
                       .+|.+.|..+.... ..+.+-+|+.|.++++|++..  .....+.++.+.+.|++|-. ...+++|+.+|.|.+|++..
T Consensus       283 -yGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~K  357 (479)
T KOG0299|consen  283 -YGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLK  357 (479)
T ss_pred             -hCCccceeeechhc-ccceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecc
Confidence             79999999999986 777777888999999999953  45567788999999999984 46799999999999999999


Q ss_pred             CceeeEeeccCCCCCC-------CCeeEEEeCCCCCEEEEEecCCcEEEEEcccc----eEEEeecCcCCCCCCCeeEEE
Q 016458          282 GHQLQVYYQQHGENEI-------PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----KVVLNLGSLQNSHEGRITCLG  350 (389)
Q Consensus       282 ~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~~~v~~~~  350 (389)
                      .+++......++....       .+|++++..|...++++|+.+|.|++|-+..+    .++..+     .-.+.|++++
T Consensus       358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~l-----s~~GfVNsl~  432 (479)
T KOG0299|consen  358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSL-----SLVGFVNSLA  432 (479)
T ss_pred             cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeec-----ccccEEEEEE
Confidence            9999888776654333       38999999999999999999999999999876    333333     3668899999


Q ss_pred             ECCCCCeEEeee-CCCee
Q 016458          351 LSADGSALCTGS-WDTNL  367 (389)
Q Consensus       351 ~~~~~~~l~~~~-~dg~i  367 (389)
                      |+++|+.+++|. ....+
T Consensus       433 f~~sgk~ivagiGkEhRl  450 (479)
T KOG0299|consen  433 FSNSGKRIVAGIGKEHRL  450 (479)
T ss_pred             EccCCCEEEEeccccccc
Confidence            999999666553 33333

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=7e-36  Score=261.39  Aligned_cols=265  Identities=26%  Similarity=0.415  Sum_probs=229.7

Q ss_pred             cCCCCCcccCCCcce--eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeC-CCCCeeEEEeeCCCcEEEEEECCC
Q 016458           44 SQGRAPVSFGPTDLV--CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNA-LTSQKTHAIKLPCAWVMTCAFSPT  120 (389)
Q Consensus        44 ~~~~~~~~~~~~~~~--~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~-~~~~~~~~~~~~~~~v~~~~~~~~  120 (389)
                      ........|......  ..+.+.+|...|++++|+|+++++++++.|++|+|||+ ..+..+.++.+|...|++++|+|+
T Consensus       178 ~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~  257 (456)
T KOG0266|consen  178 SSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD  257 (456)
T ss_pred             cCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC
Confidence            345556667776666  78888999999999999999999999999999999999 556889999999999999999999


Q ss_pred             CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe--eEEEec
Q 016458          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL--RTSVFG  198 (389)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~  198 (389)
                      ++++++|+.|++|+|||+.+++       +...+.+|.+.|++++|++++ +++++++.|+.|++||+.++.  +...+ 
T Consensus       258 g~~i~Sgs~D~tvriWd~~~~~-------~~~~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~-  328 (456)
T KOG0266|consen  258 GNLLVSGSDDGTVRIWDVRTGE-------CVRKLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKLCLKLL-  328 (456)
T ss_pred             CCEEEEecCCCcEEEEeccCCe-------EEEeeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCceeeeecc-
Confidence            9999999999999999999855       789999999999999999998 789999999999999999998  44554 


Q ss_pred             CcccCCCCC--CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccc---eEEEEEecCCCEEEEEecCCe
Q 016458          199 GEFQSGHTA--DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD---VNTVKFFPDGNRFGTGSDDGT  273 (389)
Q Consensus       199 ~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~dg~  273 (389)
                          ..+..  .++++.|+| ++.++++++.|+.+++||++.. .....+.+|...   +.+...++.+.++++|+.|+.
T Consensus       329 ----~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~  402 (456)
T KOG0266|consen  329 ----SGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSG-KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS  402 (456)
T ss_pred             ----cCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCC-cceeeecccCCcceeEecccccCCCCeEEEEeCCce
Confidence                23333  699999999 9999999999999999999988 778888888775   334455779999999999999


Q ss_pred             EEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe--cCCcEEEEEcc
Q 016458          274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY--SNGDCYVWDTL  327 (389)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~  327 (389)
                      |++||+.++..+..+..+.    ...+..+.++|..+++++++  .|+.+++|...
T Consensus       403 v~~~~~~s~~~~~~l~~h~----~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  403 VYVWDSSSGGILQRLEGHS----KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EEEEeCCccchhhhhcCCC----CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            9999999987777765542    33589999999999999988  68889999753

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-35  Score=249.44  Aligned_cols=275  Identities=25%  Similarity=0.432  Sum_probs=239.3

Q ss_pred             EEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcce
Q 016458           72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS  151 (389)
Q Consensus        72 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  151 (389)
                      =++|+. .+.||+|.. ..|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||....+       ..
T Consensus       182 lldWss-~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k-------~~  252 (484)
T KOG0305|consen  182 LLDWSS-ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK-------KT  252 (484)
T ss_pred             Hhhccc-CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc-------cc
Confidence            366773 447777765 479999999998777777768889999999999999999999999999998754       45


Q ss_pred             eeecc-cccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEE-ecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC
Q 016458          152 RMLSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV-FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS  229 (389)
Q Consensus       152 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  229 (389)
                      ..+.+ |...|.+++|..   ..+.+|+.|+.|..+|++..+.... +     .+|...|..+.|++ ++.++++|+.|+
T Consensus       253 ~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~-----~~H~qeVCgLkws~-d~~~lASGgnDN  323 (484)
T KOG0305|consen  253 RTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTL-----QGHRQEVCGLKWSP-DGNQLASGGNDN  323 (484)
T ss_pred             ccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhh-----hcccceeeeeEECC-CCCeeccCCCcc
Confidence            55666 999999999994   5799999999999999998766555 3     78999999999999 999999999999


Q ss_pred             ceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEe--cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeC
Q 016458          230 TARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGS--DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  306 (389)
Q Consensus       230 ~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  306 (389)
                      .+.|||.... .+...+..|.+.|.+++|+| ...+||+|+  .|+.|++||..++..+.......      .|+.+.|+
T Consensus       324 ~~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs------QVcsL~Ws  396 (484)
T KOG0305|consen  324 VVFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS------QVCSLIWS  396 (484)
T ss_pred             ceEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC------ceeeEEEc
Confidence            9999999766 78889999999999999999 667888876  69999999999998887765533      49999999


Q ss_pred             CCCCEEEE--EecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          307 ISGRLLFA--GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       307 ~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      +..+-|++  |..++.|.||+..+.+.+..+    .+|...|..++++|||..+++|+.|.++++    |++-+.
T Consensus       397 k~~kEi~sthG~s~n~i~lw~~ps~~~~~~l----~gH~~RVl~la~SPdg~~i~t~a~DETlrf----w~~f~~  463 (484)
T KOG0305|consen  397 KKYKELLSTHGYSENQITLWKYPSMKLVAEL----LGHTSRVLYLALSPDGETIVTGAADETLRF----WNLFDE  463 (484)
T ss_pred             CCCCEEEEecCCCCCcEEEEeccccceeeee----cCCcceeEEEEECCCCCEEEEecccCcEEe----ccccCC
Confidence            99876665  556789999999999999888    899999999999999999999999999999    888763

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.5e-36  Score=258.69  Aligned_cols=304  Identities=19%  Similarity=0.317  Sum_probs=223.5

Q ss_pred             cceeeeecc-cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCC----------cEEEEEECC---CC
Q 016458           56 DLVCCRTLQ-GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA----------WVMTCAFSP---TG  121 (389)
Q Consensus        56 ~~~~~~~l~-~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~----------~v~~~~~~~---~~  121 (389)
                      .+...+.+. +|.++|.++.||+||+|||+|+.||.|+||.+...+....-....+          .+..+.-++   .+
T Consensus       255 al~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~  334 (712)
T KOG0283|consen  255 ALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS  334 (712)
T ss_pred             eeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence            345556677 8999999999999999999999999999999865333111110000          000000111   00


Q ss_pred             c--EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC
Q 016458          122 Q--SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG  199 (389)
Q Consensus       122 ~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  199 (389)
                      +  ..-.+..... .+.+....   .....+...+.+|.+.|.++.|+.+  ++|++++.|.+|++|++....++..|  
T Consensus       335 ~~s~~~~~~~s~~-~~~p~~~f---~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F--  406 (712)
T KOG0283|consen  335 RTSSSRKGSQSPC-VLLPLKAF---VFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVF--  406 (712)
T ss_pred             cccccccccCCcc-ccCCCccc---cccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEE--
Confidence            1  1111111122 12221111   1122356778999999999999996  48999999999999999999999998  


Q ss_pred             cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEEC
Q 016458          200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI  279 (389)
Q Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  279 (389)
                          .|.+.|+|++|+|.+.++|++|+-||.|+||++...  .+..+..-..-|++++|.|||++.++|+.+|.+++|+.
T Consensus       407 ----~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t  480 (712)
T KOG0283|consen  407 ----SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK--KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDT  480 (712)
T ss_pred             ----ecCCeeEEEEecccCCCcEeecccccceEEeecCcC--eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEc
Confidence                799999999999999999999999999999999854  44445555578999999999999999999999999999


Q ss_pred             CCCceeeEeeccCCC---CCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458          280 RTGHQLQVYYQQHGE---NEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (389)
Q Consensus       280 ~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (389)
                      ...+...........   .....|+.+.|.|... .+++.+.|..|+|||.+...++..++.....  ..-....|+.||
T Consensus       481 ~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~--~SQ~~Asfs~Dg  558 (712)
T KOG0283|consen  481 EGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT--SSQISASFSSDG  558 (712)
T ss_pred             cCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC--CcceeeeEccCC
Confidence            877665554332221   1122599999997544 5777889999999999888888888532222  234567899999


Q ss_pred             CeEEeeeCCCeeEEeecceecccC
Q 016458          356 SALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       356 ~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      ++|++++.|..|+|    |++..-
T Consensus       559 k~IVs~seDs~VYi----W~~~~~  578 (712)
T KOG0283|consen  559 KHIVSASEDSWVYI----WKNDSF  578 (712)
T ss_pred             CEEEEeecCceEEE----EeCCCC
Confidence            99999999999999    998543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=3.5e-35  Score=234.46  Aligned_cols=281  Identities=20%  Similarity=0.333  Sum_probs=248.6

Q ss_pred             CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (389)
                      ..|+++...|..+.++||+.|..+.++|..+++.+..+++|...|+.+.++|+...+++++.|..|+||......     
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-----  294 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-----  294 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-----
Confidence            368899999987899999999999999999999999999999999999999999999999999999999987644     


Q ss_pred             CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (389)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (389)
                        .......|..+|+.+..+|.| .||++++.|++..+.|++++..+.....   ....-.+++.+|+| ++.+|.+|+.
T Consensus       295 --~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~---~~s~v~~ts~~fHp-DgLifgtgt~  367 (506)
T KOG0289|consen  295 --EPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSD---ETSDVEYTSAAFHP-DGLIFGTGTP  367 (506)
T ss_pred             --CccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEee---ccccceeEEeeEcC-CceEEeccCC
Confidence              455677899999999999998 7999999999999999999998887632   12345689999999 9999999999


Q ss_pred             CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC
Q 016458          228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  307 (389)
Q Consensus       228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (389)
                      ||.|++||+.+. ..+..|.+|.++|..++|+.+|-+|++++.|+.|++||+|..+....+......    .+.++.|.+
T Consensus       368 d~~vkiwdlks~-~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~----~v~s~~fD~  442 (506)
T KOG0289|consen  368 DGVVKIWDLKSQ-TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK----EVNSLSFDQ  442 (506)
T ss_pred             CceEEEEEcCCc-cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc----cceeEEEcC
Confidence            999999999988 688899999999999999999999999999999999999998877777664432    589999999


Q ss_pred             CCCEEEEEecCCcEEEEEcc--cceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          308 SGRLLFAGYSNGDCYVWDTL--LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       308 ~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      .|.+|+.++.+=.|++++-.  +...+..+    ..|.+..+++.|..+.++++++|.|..+++
T Consensus       443 SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~----~~~sg~st~v~Fg~~aq~l~s~smd~~l~~  502 (506)
T KOG0289|consen  443 SGTYLGIAGSDLQVYICKKKTKSWTEIKEL----ADHSGLSTGVRFGEHAQYLASTSMDAILRL  502 (506)
T ss_pred             CCCeEEeecceeEEEEEecccccceeeehh----hhcccccceeeecccceEEeeccchhheEE
Confidence            99999999777666666532  45566666    678889999999999999999999999988

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=3e-34  Score=269.61  Aligned_cols=270  Identities=17%  Similarity=0.269  Sum_probs=218.0

Q ss_pred             CCcEEEEeCCCCCeeEEE-----eeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC-cceeeecccccce
Q 016458           88 DGRLIVWNALTSQKTHAI-----KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL-PVSRMLSGHKGYV  161 (389)
Q Consensus        88 dg~v~iw~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~v  161 (389)
                      +|.+++|+..+......+     ..|...|.+++|+|+++++++|+.|+.|+||++.......... .....+. +...+
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v  535 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL  535 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence            677888887765544333     3477889999999999999999999999999986421111111 1112222 34679


Q ss_pred             EEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc
Q 016458          162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR  241 (389)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  241 (389)
                      .+++|++....+|++++.||.|++||+.+++.+..+     ..|...|.+++|+|.++.+|++|+.||.|++||+++. .
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~-----~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-~  609 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM-----KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-V  609 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe-----cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-c
Confidence            999999875578999999999999999999888887     7899999999999867889999999999999999876 6


Q ss_pred             ceeEEeeeccceEEEEEe-cCCCEEEEEecCCeEEEEECCCCce-eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC
Q 016458          242 AVRTFHGHEGDVNTVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG  319 (389)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (389)
                      .+..+.. ...+.++.|+ +++.+|++|+.||.|++||++.... ...+..     +...|.++.|. ++.+|++++.|+
T Consensus       610 ~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~-----h~~~V~~v~f~-~~~~lvs~s~D~  682 (793)
T PLN00181        610 SIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG-----HSKTVSYVRFV-DSSTLVSSSTDN  682 (793)
T ss_pred             EEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC-----CCCCEEEEEEe-CCCEEEEEECCC
Confidence            6666664 4678999995 4799999999999999999987653 333332     33459999997 778999999999


Q ss_pred             cEEEEEcccc------eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          320 DCYVWDTLLA------KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       320 ~i~i~d~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      .|++||+..+      ..+..+    .+|...+.+++|++++.+|++|+.||.|++    |+...+
T Consensus       683 ~ikiWd~~~~~~~~~~~~l~~~----~gh~~~i~~v~~s~~~~~lasgs~D~~v~i----w~~~~~  740 (793)
T PLN00181        683 TLKLWDLSMSISGINETPLHSF----MGHTNVKNFVGLSVSDGYIATGSETNEVFV----YHKAFP  740 (793)
T ss_pred             EEEEEeCCCCccccCCcceEEE----cCCCCCeeEEEEcCCCCEEEEEeCCCEEEE----EECCCC
Confidence            9999999743      456666    789999999999999999999999999999    997654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.5e-35  Score=232.62  Aligned_cols=282  Identities=22%  Similarity=0.330  Sum_probs=233.5

Q ss_pred             cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCC---cEEEEecCCCcEEEEeCCCC
Q 016458           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG---QSVACGGLDSVCSIFNLNSP  141 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~vw~~~~~  141 (389)
                      -|.+-|.++...  ++.+++|+.||.+++||. .|+....+.+|.+++.+++|.-.+   ..|++++.|.++++|.++.+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            488889999887  569999999999999994 689999999999999988885433   35999999999999999875


Q ss_pred             CCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-------------------------eeEEE
Q 016458          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-------------------------LRTSV  196 (389)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------------------------~~~~~  196 (389)
                      ...   ........+|...|.++...+++ ..+++|+.|.+|.+|+..+.                         .++..
T Consensus       180 ~~~---~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt  255 (423)
T KOG0313|consen  180 ENK---VKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT  255 (423)
T ss_pred             hhh---hhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence            532   22334445999999999999998 78999999999999993321                         12222


Q ss_pred             ecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEE
Q 016458          197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL  276 (389)
Q Consensus       197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  276 (389)
                      +     .+|..+|.++.|++  ...+++++.|.+|+.||+.++ .....+. .+..+.++.++|..++|++|+.|..|++
T Consensus       256 l-----~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg-~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl  326 (423)
T KOG0313|consen  256 L-----EGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETG-GLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRL  326 (423)
T ss_pred             e-----cccccceeeEEEcC--CCceEeecccceEEEEEeecc-cceeeee-cCcceeEeecccccceeeecCCCCceee
Confidence            2     68999999999996  668899999999999999988 5555554 3567999999999999999999999999


Q ss_pred             EECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccce-EEEeecCcCCCCCCCeeEEEECCC
Q 016458          277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSAD  354 (389)
Q Consensus       277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~  354 (389)
                      ||.+++........  ...|...|.++.|+|... .|++|+.|+++++||+++.+ ++..+    .+|...|.++.|. +
T Consensus       327 ~DPR~~~gs~v~~s--~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI----~~h~DKvl~vdW~-~  399 (423)
T KOG0313|consen  327 WDPRTGDGSVVSQS--LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI----AGHNDKVLSVDWN-E  399 (423)
T ss_pred             cCCCCCCCceeEEe--eecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee----ccCCceEEEEecc-C
Confidence            99998643322211  234455899999999765 67889999999999999877 88888    8999999999998 5


Q ss_pred             CCeEEeeeCCCeeEE
Q 016458          355 GSALCTGSWDTNLKV  369 (389)
Q Consensus       355 ~~~l~~~~~dg~i~i  369 (389)
                      +.++++||.|.+++|
T Consensus       400 ~~~IvSGGaD~~l~i  414 (423)
T KOG0313|consen  400 GGLIVSGGADNKLRI  414 (423)
T ss_pred             CceEEeccCcceEEE
Confidence            668999999999999

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.9e-37  Score=240.18  Aligned_cols=288  Identities=18%  Similarity=0.260  Sum_probs=237.2

Q ss_pred             eeeecccccCcEEEEEEcCCC-CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Q 016458           59 CCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (389)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (389)
                      .+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....+...+..|.+.|..+++..  ..+++++.|.+|+.|.
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence            345789999999999999976 7899999999999999999999999999999999999986  7788899999999999


Q ss_pred             CCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC
Q 016458          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS  217 (389)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  217 (389)
                      ++.+        ...++.+ .+.+..+.-+..+ ..++++|.  .|.|||.....++..+     .-..+.|.++.|+|.
T Consensus       136 ~~~~--------p~~tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~sm-----swG~Dti~svkfNpv  198 (433)
T KOG0268|consen  136 IDGP--------PLHTILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVSSM-----SWGADSISSVKFNPV  198 (433)
T ss_pred             ccCC--------cceeeec-ccccccccccccc-ccccccCc--eeeecccccCCcccee-----ecCCCceeEEecCCC
Confidence            8862        2333332 3455566655554 56887776  4899999988888888     566778999999998


Q ss_pred             CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCC
Q 016458          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI  297 (389)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  297 (389)
                      ...+|+++..|+.|.+||++.. .++.... ....-+.|+|+|++-.+++|+.|..++.||++..........    .+.
T Consensus       199 ETsILas~~sDrsIvLyD~R~~-~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~----dhv  272 (433)
T KOG0268|consen  199 ETSILASCASDRSIVLYDLRQA-SPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK----DHV  272 (433)
T ss_pred             cchheeeeccCCceEEEecccC-Cccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhc----ccc
Confidence            8899999999999999999998 5655544 234567899999888899999999999999987554433322    334


Q ss_pred             CCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      +.|.++.|||.|+-+++|+.|.+|+||..+.+.......   ......|.|+.||.|.+|+++||.|+.|++    |.-.
T Consensus       273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh---tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl----Wka~  345 (433)
T KOG0268|consen  273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH---TKRMQHVFCVKYSMDSKYIISGSDDGNVRL----WKAK  345 (433)
T ss_pred             eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh---HhhhheeeEEEEeccccEEEecCCCcceee----eecc
Confidence            469999999999999999999999999998776554442   233457999999999999999999999999    9876


Q ss_pred             c
Q 016458          378 E  378 (389)
Q Consensus       378 ~  378 (389)
                      .
T Consensus       346 A  346 (433)
T KOG0268|consen  346 A  346 (433)
T ss_pred             h
Confidence            4

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.1e-35  Score=229.82  Aligned_cols=267  Identities=18%  Similarity=0.312  Sum_probs=226.0

Q ss_pred             CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458           45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV  124 (389)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  124 (389)
                      .+.....|+..+......+.+|++.|+|+.|+.+|.+||||..+|.|+||...++.....+......+.-+.|+|.+..|
T Consensus        84 gDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~il  163 (399)
T KOG0296|consen   84 GDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHIL  163 (399)
T ss_pred             CCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEE
Confidence            34455678888888899999999999999999999999999999999999999999998888777789999999999999


Q ss_pred             EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc---
Q 016458          125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF---  201 (389)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---  201 (389)
                      ++|+.||.+-+|.+.+..       ..+.+.+|+.++++-.|.|+| +.++++..||+|++||+.++++...+...-   
T Consensus       164 lAG~~DGsvWmw~ip~~~-------~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~  235 (399)
T KOG0296|consen  164 LAGSTDGSVWMWQIPSQA-------LCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLE  235 (399)
T ss_pred             EeecCCCcEEEEECCCcc-------eeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccccCc
Confidence            999999999999998743       678899999999999999998 789999999999999999998777664100   


Q ss_pred             -------------------------------------------cCCCCCCeeEEEeeCC--CCcEEEEeeCCCceEEEeC
Q 016458          202 -------------------------------------------QSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDT  236 (389)
Q Consensus       202 -------------------------------------------~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~  236 (389)
                                                                 ...+...+.++.+.|.  .-.+.++|+-||+|.|||+
T Consensus       236 ~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~  315 (399)
T KOG0296|consen  236 LPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDL  315 (399)
T ss_pred             CCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEec
Confidence                                                       0011112222222221  2346788999999999999


Q ss_pred             CCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458          237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (389)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (389)
                      ...  .++....|..+|..+.|.+ ..+|++++.+|.|+.||.++|+.+..+..+...     |.+++++|+++++++++
T Consensus       316 a~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~-----Il~f~ls~~~~~vvT~s  387 (399)
T KOG0296|consen  316 AAS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG-----ILDFALSPQKRLVVTVS  387 (399)
T ss_pred             ccc--hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchh-----eeEEEEcCCCcEEEEec
Confidence            854  4556667999999999998 789999999999999999999999999776654     99999999999999999


Q ss_pred             cCCcEEEEEcc
Q 016458          317 SNGDCYVWDTL  327 (389)
Q Consensus       317 ~dg~i~i~d~~  327 (389)
                      .|+..+||+..
T Consensus       388 ~D~~a~VF~v~  398 (399)
T KOG0296|consen  388 DDNTALVFEVP  398 (399)
T ss_pred             CCCeEEEEecC
Confidence            99999999864

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.3e-36  Score=224.17  Aligned_cols=256  Identities=21%  Similarity=0.390  Sum_probs=216.9

Q ss_pred             CCcceeeeecccccCcEEEEEEcCCC-CeEEEEecCCcEEEEeCCC-CCeeEEEeeCCCcEEEEEECC-CCcEEEEecCC
Q 016458           54 PTDLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSP-TGQSVACGGLD  130 (389)
Q Consensus        54 ~~~~~~~~~l~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  130 (389)
                      +.....+..+. -.+.+..++|++.. +.+++++.||++++||... ..++..++.|...|.++.|++ ++..+++++.|
T Consensus        48 ~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD  126 (311)
T KOG0277|consen   48 PKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD  126 (311)
T ss_pred             CCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccC
Confidence            44555555554 45679999999954 6889999999999999643 457888899999999999998 56678888999


Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  210 (389)
                      ++|++|+...+.       ...++.+|...|...+|+|..++++++++.||++++||++.......+     ..|...+.
T Consensus       127 ~TiKLW~~~r~~-------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i-----~ah~~Eil  194 (311)
T KOG0277|consen  127 GTIKLWDPNRPN-------SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI-----EAHNSEIL  194 (311)
T ss_pred             CceEeecCCCCc-------ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE-----EeccceeE
Confidence            999999998755       677899999999999999999999999999999999999876555556     68889999


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEee
Q 016458          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (389)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (389)
                      ++.|+..+.+++++|+.|+.|+.||+++...++..+.+|.-.|+.+.||| ....|++++.|-+++|||...+.......
T Consensus       195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~  274 (311)
T KOG0277|consen  195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV  274 (311)
T ss_pred             eecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhh
Confidence            99999989999999999999999999999899999999999999999999 45688999999999999988554443333


Q ss_pred             ccCCCCCCCCeeEEEeCC-CCCEEEEEecCCcEEEEEc
Q 016458          290 QQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~  326 (389)
                      .++.    .-+..+.|++ ++.++|..+.|+.++||+.
T Consensus       275 ~~Ht----EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  275 DHHT----EFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hccc----eEEeccccccccCceeeecccccceeeecc
Confidence            3222    2488889987 4569999999999999983

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.3e-35  Score=226.19  Aligned_cols=262  Identities=25%  Similarity=0.368  Sum_probs=220.6

Q ss_pred             eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC
Q 016458          101 KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD  180 (389)
Q Consensus       101 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  180 (389)
                      ++..+.+|.+.|..+.|+|+|..|++|+.|..|.+|++....      .-...+++|++.|..+.|.+++ +.+++++.|
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc------eN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtD  111 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC------ENFWVLKGHSGAVMELHGMRDG-SHILSCGTD  111 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc------cceeeeccccceeEeeeeccCC-CEEEEecCC
Confidence            344567899999999999999999999999999999977533      2345667999999999999998 789999999


Q ss_pred             CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec
Q 016458          181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP  260 (389)
Q Consensus       181 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~  260 (389)
                      .+|+.||.++++....+     ..|..-+.++.....+..++.+++.|+++++||+|+. ..++.+. ....++++.|..
T Consensus       112 k~v~~wD~~tG~~~rk~-----k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~-~kyqltAv~f~d  184 (338)
T KOG0265|consen  112 KTVRGWDAETGKRIRKH-----KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFE-NKYQLTAVGFKD  184 (338)
T ss_pred             ceEEEEecccceeeehh-----ccccceeeecCccccCCeEEEecCCCceEEEEeeccc-chhhccc-cceeEEEEEecc
Confidence            99999999999999998     7999999999977666778889999999999999976 5555553 456789999999


Q ss_pred             CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc----eEEEeec
Q 016458          261 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----KVVLNLG  336 (389)
Q Consensus       261 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~  336 (389)
                      ++..+.+|+-|+.|++||++.......+..+..     +|+.+..+|+|.++.+-+.|..+++||++..    +.+..+.
T Consensus       185 ~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-----tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~  259 (338)
T KOG0265|consen  185 TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD-----TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQ  259 (338)
T ss_pred             cccceeeccccCceeeeccccCcceEEeecccC-----ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEee
Confidence            999999999999999999999988888866554     4999999999999999999999999998742    3355553


Q ss_pred             CcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc-CcccCcc
Q 016458          337 SLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE-GALSPWG  385 (389)
Q Consensus       337 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~-~~~~~~~  385 (389)
                      ......+......+|+|++.++.+|+.|..+++    ||... +-+..|.
T Consensus       260 g~~hnfeknlL~cswsp~~~~i~ags~dr~vyv----wd~~~r~~lyklp  305 (338)
T KOG0265|consen  260 GHIHNFEKNLLKCSWSPNGTKITAGSADRFVYV----WDTTSRRILYKLP  305 (338)
T ss_pred             cchhhhhhhcceeeccCCCCccccccccceEEE----eecccccEEEEcC
Confidence            322223345567799999999999999999999    99987 4444443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-35  Score=218.46  Aligned_cols=251  Identities=24%  Similarity=0.369  Sum_probs=223.5

Q ss_pred             eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC
Q 016458          101 KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD  180 (389)
Q Consensus       101 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  180 (389)
                      ....+..+.++|..+.|+-+|++.++++.|.+|++|+...+.       +++++.+|...|..++.+.++ ..|++|+.|
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-------liktYsghG~EVlD~~~s~Dn-skf~s~GgD   80 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-------LIKTYSGHGHEVLDAALSSDN-SKFASCGGD   80 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-------eeeeecCCCceeeeccccccc-cccccCCCC
Confidence            455677888999999999999999999999999999998765       889999999999999999997 679999999


Q ss_pred             CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCC-CcceeEEeeeccceEEEEEe
Q 016458          181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFHGHEGDVNTVKFF  259 (389)
Q Consensus       181 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~~~~~  259 (389)
                      ..+.+||+.+|+....+     .+|...|+.+.|+. +...+++|+.|..+++||.++. .++++.+......|.++...
T Consensus        81 k~v~vwDV~TGkv~Rr~-----rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~  154 (307)
T KOG0316|consen   81 KAVQVWDVNTGKVDRRF-----RGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA  154 (307)
T ss_pred             ceEEEEEcccCeeeeec-----ccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec
Confidence            99999999999999999     89999999999997 8889999999999999999875 36778888788889999885


Q ss_pred             cCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC
Q 016458          260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ  339 (389)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  339 (389)
                        +..|++|+.||+++.||++.|.....+..       .+|++++|+++++..++++.|+.+++.|-.+|+.+...    
T Consensus       155 --~heIvaGS~DGtvRtydiR~G~l~sDy~g-------~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY----  221 (307)
T KOG0316|consen  155 --EHEIVAGSVDGTVRTYDIRKGTLSSDYFG-------HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY----  221 (307)
T ss_pred             --ccEEEeeccCCcEEEEEeecceeehhhcC-------CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh----
Confidence              66899999999999999999877655433       25999999999999999999999999999999999998    


Q ss_pred             CCCCCCe--eEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          340 NSHEGRI--TCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       340 ~~~~~~v--~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      .+|.+.=  ...+++.....+++|+.||.|.+    ||+.++++.
T Consensus       222 kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~----wdLvd~~~~  262 (307)
T KOG0316|consen  222 KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYF----WDLVDETQI  262 (307)
T ss_pred             cccccceeeeeeeecccceeEEeccCCceEEE----EEeccceee
Confidence            6776543  44567777889999999999999    999988764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=5.3e-35  Score=254.79  Aligned_cols=297  Identities=25%  Similarity=0.424  Sum_probs=257.3

Q ss_pred             CCcccCCCcceeeeeccc-ccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEE-EeeCCCcEEEEEECCCCcEEE
Q 016458           48 APVSFGPTDLVCCRTLQG-HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA-IKLPCAWVMTCAFSPTGQSVA  125 (389)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~-h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~  125 (389)
                      ....|.+........+.+ |...+.+..|.  ..++++++.|.+|++||..++..+.. +.+|.+.|.++++..-+.+++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lv  265 (537)
T KOG0274|consen  188 LSKNWRKLFRRGYKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLV  265 (537)
T ss_pred             ccccccccccccceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEE
Confidence            334455544444455555 56689999998  44899999999999999999999988 999999999999988889999


Q ss_pred             EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCC
Q 016458          126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH  205 (389)
Q Consensus       126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  205 (389)
                      +|+.|.++++||..++.       +...+.+|.+.+.++...+   ..+++|+.|.+|++|++.++..+..+     .+|
T Consensus       266 sgS~D~t~rvWd~~sg~-------C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~-----~~h  330 (537)
T KOG0274|consen  266 SGSTDKTERVWDCSTGE-------CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLL-----RGH  330 (537)
T ss_pred             EEecCCcEEeEecCCCc-------EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEe-----ccc
Confidence            99999999999998876       8899999999999998876   56888999999999999999999998     669


Q ss_pred             CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCC-ce
Q 016458          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG-HQ  284 (389)
Q Consensus       206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~  284 (389)
                      ..+|.++..+   +.++++|+.|++|.+||+.+. +++..+.+|...|.++.+.+. ..+++|+.|+.|++||+++. ++
T Consensus       331 ~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c  405 (537)
T KOG0274|consen  331 TGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKC  405 (537)
T ss_pred             cccEEEEEec---CCEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhh
Confidence            9999999986   679999999999999999977 999999999999999988654 89999999999999999998 77


Q ss_pred             eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCC-CCCCeeEEEECCCCCeEEeeeC
Q 016458          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS-HEGRITCLGLSADGSALCTGSW  363 (389)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~  363 (389)
                      +..+..+...     +..+.  ..+++|++++.|+.|++||..+++.+..+    .+ |.+.|+.+++.  ...+++++.
T Consensus       406 ~~tl~~h~~~-----v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~----~~~~~~~v~~l~~~--~~~il~s~~  472 (537)
T KOG0274|consen  406 IHTLQGHTSL-----VSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTL----EGRHVGGVSALALG--KEEILCSSD  472 (537)
T ss_pred             hhhhcCCccc-----ccccc--cccceeEeccccccEEEeecccCceeeee----ccCCcccEEEeecC--cceEEEEec
Confidence            7777654442     44443  46789999999999999999999999999    45 67889999886  457899999


Q ss_pred             CCeeEEeecceecccCcccC
Q 016458          364 DTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       364 dg~i~i~~~~W~~~~~~~~~  383 (389)
                      ||.+++    ||+.++++..
T Consensus       473 ~~~~~l----~dl~~~~~~~  488 (537)
T KOG0274|consen  473 DGSVKL----WDLRSGTLIR  488 (537)
T ss_pred             CCeeEE----EecccCchhh
Confidence            999999    9999998764

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=8.2e-34  Score=247.18  Aligned_cols=274  Identities=14%  Similarity=0.152  Sum_probs=213.2

Q ss_pred             CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee-------------EEEeeCCCcEEEEEECC-CCcEEEEecCCCcE
Q 016458           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-------------HAIKLPCAWVMTCAFSP-TGQSVACGGLDSVC  133 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i  133 (389)
                      ..|.....++++..+++++.+.....|+...+..+             ..+.+|.+.|.+++|+| ++++|++|+.|+.|
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI  100 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI  100 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence            34556666667666677777666667765433221             24667899999999999 88999999999999


Q ss_pred             EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (389)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  213 (389)
                      ++||+...............+.+|...|.+++|+|++.++|++++.|+.|++||+.++.....+     ..|...|.+++
T Consensus       101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l-----~~h~~~V~sla  175 (493)
T PTZ00421        101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI-----KCHSDQITSLE  175 (493)
T ss_pred             EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE-----cCCCCceEEEE
Confidence            9999976432111223456788999999999999987679999999999999999999888877     67889999999


Q ss_pred             eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccc-eEEEEEecCCCEEEEEe----cCCeEEEEECCCCceeeEe
Q 016458          214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFPDGNRFGTGS----DDGTCRLFDIRTGHQLQVY  288 (389)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~  288 (389)
                      |+| ++.+|++++.|+.|++||++++ ..+..+.+|.+. +..+.|.+++..+++++    .|+.|++||+++.......
T Consensus       176 ~sp-dG~lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~  253 (493)
T PTZ00421        176 WNL-DGSLLCTTSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST  253 (493)
T ss_pred             EEC-CCCEEEEecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence            999 8899999999999999999987 677788888765 45678999888877654    4789999999876543332


Q ss_pred             eccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458          289 YQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (389)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (389)
                      ....   ....+....|++++++|++++ .|+.|++||+.+++......   ..+..++.+++|.|.
T Consensus       254 ~~~d---~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~---~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        254 VDLD---QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS---YSSVEPHKGLCMMPK  314 (493)
T ss_pred             eccC---CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee---ccCCCCCcceEeccc
Confidence            2111   112356677999999999887 59999999999988776653   345667889999885

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.2e-34  Score=222.90  Aligned_cols=307  Identities=18%  Similarity=0.280  Sum_probs=231.9

Q ss_pred             CcccCCCcce-----eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeE----EEeeCCCcEEEEEECC
Q 016458           49 PVSFGPTDLV-----CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH----AIKLPCAWVMTCAFSP  119 (389)
Q Consensus        49 ~~~~~~~~~~-----~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~----~~~~~~~~v~~~~~~~  119 (389)
                      ...|++.+..     ....|+||.+.|++++|+.||++|||++.|++|++|++.+.....    ......+..+.+.|.|
T Consensus        63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap  142 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP  142 (420)
T ss_pred             hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC
Confidence            4456665543     445789999999999999999999999999999999987643211    1122334578999999


Q ss_pred             CCcEEEEe-cCCCcEEEEeCCCCCCCCCCCccee-----eecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee
Q 016458          120 TGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSR-----MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR  193 (389)
Q Consensus       120 ~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  193 (389)
                      |-+-+++. -....+++|.+...+..........     ....|.-.+..+-....+ .++++++.|..|.+|++. |+.
T Consensus       143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~  220 (420)
T KOG2096|consen  143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQL  220 (420)
T ss_pred             CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cce
Confidence            98776554 4456799998876554333332222     223455566666666554 899999999999999998 788


Q ss_pred             EEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC-------cceeEEeeeccceEEEEEecCCCEEE
Q 016458          194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-------RAVRTFHGHEGDVNTVKFFPDGNRFG  266 (389)
Q Consensus       194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~  266 (389)
                      +..+     ......-+..+.+| +++++++++....|++|.+--..       ..+..+.+|...|..++|+|+...++
T Consensus       221 L~~i-----dtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v  294 (420)
T KOG2096|consen  221 LQSI-----DTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV  294 (420)
T ss_pred             eeee-----ccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeE
Confidence            8777     45666677889999 99999999999999999863221       34567899999999999999999999


Q ss_pred             EEecCCeEEEEECCCC-------ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC
Q 016458          267 TGSDDGTCRLFDIRTG-------HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ  339 (389)
Q Consensus       267 ~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  339 (389)
                      +.+.||++++||.+-.       +.+............. ...+.++|.|+.|+++.. ..+.+|..++++....+.   
T Consensus       295 tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~-p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e---  369 (420)
T KOG2096|consen  295 TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE-PVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELE---  369 (420)
T ss_pred             EEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC-ceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHH---
Confidence            9999999999997532       2222221111111222 348999999999988754 479999999998888776   


Q ss_pred             CCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          340 NSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       340 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      ..|.+.|++++|+++|++++++| |..+++
T Consensus       370 ~~h~~~Is~is~~~~g~~~atcG-dr~vrv  398 (420)
T KOG2096|consen  370 DIHSTTISSISYSSDGKYIATCG-DRYVRV  398 (420)
T ss_pred             HhhcCceeeEEecCCCcEEeeec-ceeeee
Confidence            78999999999999999999987 567777

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=5e-35  Score=258.70  Aligned_cols=299  Identities=21%  Similarity=0.314  Sum_probs=248.2

Q ss_pred             cccc-cCcEEEEEEcCCCCeEEEEe--cCCcEEEEeCCC------------CCeeEEEeeCCCcEEEEEECCCCcEEEEe
Q 016458           63 LQGH-AGKVYSLDWTSERNRIVSAS--QDGRLIVWNALT------------SQKTHAIKLPCAWVMTCAFSPTGQSVACG  127 (389)
Q Consensus        63 l~~h-~~~v~~~~~~~~~~~l~~~~--~dg~v~iw~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  127 (389)
                      +.+| ...|.+++.+|+|..+|||+  .||.++||+.+.            .+.+.+...|.+.|+|+.|+|||++||+|
T Consensus         8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG   87 (942)
T KOG0973|consen    8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG   87 (942)
T ss_pred             ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec
Confidence            3344 45899999999999999999  899999997632            24456667889999999999999999999


Q ss_pred             cCCCcEEEEeCCC-----------CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEE
Q 016458          128 GLDSVCSIFNLNS-----------PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV  196 (389)
Q Consensus       128 ~~dg~i~vw~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  196 (389)
                      ++|+.|.||....           +......+.....+.+|.+.|.+++|+|++ .++++++.|++|.+||..+...+..
T Consensus        88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~v  166 (942)
T KOG0973|consen   88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKV  166 (942)
T ss_pred             cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeee
Confidence            9999999999883           112234556778899999999999999986 8999999999999999999999998


Q ss_pred             ecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee------ccceEEEEEecCCCEEEEEec
Q 016458          197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------EGDVNTVKFFPDGNRFGTGSD  270 (389)
Q Consensus       197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~  270 (389)
                      +     .+|.+.|..+.|.| -+++|++-+.|++|++|++.+. ...+.+..+      ...+..+.|||||++|++...
T Consensus       167 l-----~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw-~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  167 L-----RGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDW-GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             e-----ecccccccceEECC-ccCeeeeecCCceEEEEEcccc-eeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence            8     89999999999999 8999999999999999997764 444444433      234788999999999998752


Q ss_pred             ----CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC-----CC------------EEEEEecCCcEEEEEcccc
Q 016458          271 ----DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-----GR------------LLFAGYSNGDCYVWDTLLA  329 (389)
Q Consensus       271 ----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~------------~l~~~~~dg~i~i~d~~~~  329 (389)
                          -..+.|.+-.+.+.-..+..+..     ++.++.|+|.     .+            .+|+|+.|++|.||.....
T Consensus       240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-----p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~  314 (942)
T KOG0973|consen  240 VNGGKSTIAIIERGTWKVDKDLVGHSA-----PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP  314 (942)
T ss_pred             ccCCcceeEEEecCCceeeeeeecCCC-----ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence                34688888776666666655444     5999999972     11            6788999999999999888


Q ss_pred             eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcc
Q 016458          330 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~  381 (389)
                      +++....   .-....|.+++|+|||..|++++.||+|.+    ..+++.++
T Consensus       315 RPl~vi~---~lf~~SI~DmsWspdG~~LfacS~DGtV~~----i~Fee~El  359 (942)
T KOG0973|consen  315 RPLFVIH---NLFNKSIVDMSWSPDGFSLFACSLDGTVAL----IHFEEKEL  359 (942)
T ss_pred             Cchhhhh---hhhcCceeeeeEcCCCCeEEEEecCCeEEE----EEcchHHh
Confidence            8877664   445678999999999999999999999999    88887665

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.7e-34  Score=215.94  Aligned_cols=268  Identities=20%  Similarity=0.273  Sum_probs=218.0

Q ss_pred             cccCCCCCcccCCC---cceeeeec-ccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC--CeeEEEeeCCCcEEEE
Q 016458           42 SRSQGRAPVSFGPT---DLVCCRTL-QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAWVMTC  115 (389)
Q Consensus        42 ~~~~~~~~~~~~~~---~~~~~~~l-~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~~  115 (389)
                      +.+.+.....|+..   ...+...| .+|+..|..++|+|.|++||+|+.|.++.||.-..+  +.+..+.+|...|.++
T Consensus        32 scg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~V  111 (312)
T KOG0645|consen   32 SCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCV  111 (312)
T ss_pred             eecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEE
Confidence            33445555566555   46666666 369999999999999999999999999999976544  5688899999999999


Q ss_pred             EECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC-C--e
Q 016458          116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-G--L  192 (389)
Q Consensus       116 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~--~  192 (389)
                      +|+++|++||+++.|..|-||.+...    .++.+...+..|...|..+.|+|.. .+|++++.|.+|++|+-.. .  .
T Consensus       112 aws~sG~~LATCSRDKSVWiWe~ded----dEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~  186 (312)
T KOG0645|consen  112 AWSASGNYLATCSRDKSVWIWEIDED----DEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWE  186 (312)
T ss_pred             EEcCCCCEEEEeeCCCeEEEEEecCC----CcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCee
Confidence            99999999999999999999999853    3667889999999999999999986 6999999999999998773 2  5


Q ss_pred             eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCC
Q 016458          193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  272 (389)
Q Consensus       193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  272 (389)
                      +...+     .+|...|.+++|++ .+..|++++.|++++||.....     .-..|..++..+.|.  ...|++++.|+
T Consensus       187 c~~tl-----~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~  253 (312)
T KOG0645|consen  187 CVQTL-----DGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDD  253 (312)
T ss_pred             EEEEe-----cCccceEEEEEecC-CCceEEEecCCcceEeeeeccC-----cchhcccceEeeeec--ccceEeccCCC
Confidence            67777     78889999999998 7889999999999999986633     112377889999998  45799999999


Q ss_pred             eEEEEECCCCc--eeeEeeccCCCCCCCCeeEEEeCCC-CCEEEEEecCCcEEEEEcc
Q 016458          273 TCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       273 ~i~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~  327 (389)
                      .|++|.-....  +...+.......|...|+++.|+|. .+.|++|+.||.|++|.+.
T Consensus       254 ~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  254 AIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            99999866421  1111111112234446999999995 6799999999999999864

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.4e-34  Score=219.44  Aligned_cols=275  Identities=21%  Similarity=0.333  Sum_probs=225.4

Q ss_pred             ccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCCC-Cee-EEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCC
Q 016458           66 HAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTS-QKT-HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT  142 (389)
Q Consensus        66 h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~-~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  142 (389)
                      -.+.|.+|+||| ...+++++|.||+||+|+++.. ..+ .....|.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            356799999999 5557779999999999999773 332 3345678999999999999999999999999999999865


Q ss_pred             CCCCCCcceeeecccccceEEEEEeeCCC-cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcE
Q 016458          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM  221 (389)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  221 (389)
                              ...+..|.++|.++.|.+... ..|++|+.|.+|+.||.+....+..+      .....++++..-   ..+
T Consensus       106 --------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~------~LPeRvYa~Dv~---~pm  168 (347)
T KOG0647|consen  106 --------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL------QLPERVYAADVL---YPM  168 (347)
T ss_pred             --------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee------eccceeeehhcc---Cce
Confidence                    567788999999999988642 37899999999999999999888886      456678887763   468


Q ss_pred             EEEeeCCCceEEEeCCCCCcceeEEe-eeccceEEEEEecCCCEEEEEecCCeEEEEECCCC--ceeeEeeccCCCC---
Q 016458          222 FVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG--HQLQVYYQQHGEN---  295 (389)
Q Consensus       222 l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~---  295 (389)
                      ++++..+..|.+|+++++....+... .-.-.++|++..++.+..+.|+-+|.+.+..+..+  +.-..+..+...+   
T Consensus       169 ~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~  248 (347)
T KOG0647|consen  169 AVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVN  248 (347)
T ss_pred             eEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCC
Confidence            89999999999999987643333222 23345889999999888899999999999999886  4444454444221   


Q ss_pred             -CCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458          296 -EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  361 (389)
Q Consensus       296 -~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  361 (389)
                       ....|++++|+|....|++.+.||.+.+||-.....+++.    ..|..+|++.+|+.+|.+++-+
T Consensus       249 ~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s----~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  249 DDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS----ETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             CceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc----CcCCCccceeEecCCCCEEEEE
Confidence             2446899999999999999999999999999888888877    7899999999999999988755

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.3e-35  Score=251.35  Aligned_cols=269  Identities=23%  Similarity=0.315  Sum_probs=233.2

Q ss_pred             CCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE
Q 016458           46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA  125 (389)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  125 (389)
                      .+.+..|+-.-..++..|.+|.++|..++|+|++.++++|+.|-.|++|+..+.+++.++.+|-..|..+.|++.-.+++
T Consensus        30 sG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIl  109 (1202)
T KOG0292|consen   30 SGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWIL  109 (1202)
T ss_pred             CceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEE
Confidence            34556787777788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEe--------
Q 016458          126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF--------  197 (389)
Q Consensus       126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------  197 (389)
                      +++.|.+|+||+..+++       ++..+.+|+..|.|..|+|.. .++++++-|.+|++||+..-.....-        
T Consensus       110 SASDDQTIrIWNwqsr~-------~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~  181 (1202)
T KOG0292|consen  110 SASDDQTIRIWNWQSRK-------CIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQM  181 (1202)
T ss_pred             EccCCCeEEEEeccCCc-------eEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhh
Confidence            99999999999999876       889999999999999999986 68999999999999998642111100        


Q ss_pred             ----------------cCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC-cceeEEeeeccceEEEEEec
Q 016458          198 ----------------GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFP  260 (389)
Q Consensus       198 ----------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~  260 (389)
                                      -.....+|...|+-++|+| .-.++++|+.|..|++|.+...+ -.+.+..+|.+.|.++-|+|
T Consensus       182 ~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp  260 (1202)
T KOG0292|consen  182 RGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHP  260 (1202)
T ss_pred             hccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecC
Confidence                            0112368999999999999 77899999999999999987542 23456789999999999999


Q ss_pred             CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458          261 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (389)
Q Consensus       261 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (389)
                      ..+++++.+.|++|++||+...+.+.++...+..     ...++-+|..+++++|. |+-+.||.++..
T Consensus       261 ~q~lIlSnsEDksirVwDm~kRt~v~tfrrendR-----FW~laahP~lNLfAAgH-DsGm~VFkleRE  323 (1202)
T KOG0292|consen  261 HQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDR-----FWILAAHPELNLFAAGH-DSGMIVFKLERE  323 (1202)
T ss_pred             ccceeEecCCCccEEEEecccccceeeeeccCCe-----EEEEEecCCcceeeeec-CCceEEEEEccc
Confidence            9999999999999999999999999998776654     89999999999888885 555777776543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=8.6e-34  Score=237.57  Aligned_cols=260  Identities=32%  Similarity=0.549  Sum_probs=226.9

Q ss_pred             CCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE
Q 016458           46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA  125 (389)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  125 (389)
                      ......|+.........+.+|...+.++.|+|++++|++++.||.|++|++.+++....+..|...+.++.|++++++++
T Consensus        30 ~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  109 (289)
T cd00200          30 DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILS  109 (289)
T ss_pred             CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEE
Confidence            45566677777777788899999999999999999999999999999999999888888888888999999999999999


Q ss_pred             EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCC
Q 016458          126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH  205 (389)
Q Consensus       126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  205 (389)
                      +++.+|.|.+|++....       ....+..|...+.++.|+|++ .++++++.++.|++||+.+++....+     ..+
T Consensus       110 ~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~-----~~~  176 (289)
T cd00200         110 SSSRDKTIKVWDVETGK-------CLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATL-----TGH  176 (289)
T ss_pred             EecCCCeEEEEECCCcE-------EEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeE-----ecC
Confidence            88889999999998543       455666888999999999985 67777777999999999988888777     577


Q ss_pred             CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCcee
Q 016458          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL  285 (389)
Q Consensus       206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  285 (389)
                      ...+.++.|+| +++.+++++.++.|++||++.. ..+..+..|...+.+++|+|++.++++++.||.|++||+.+++..
T Consensus       177 ~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~  254 (289)
T cd00200         177 TGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV  254 (289)
T ss_pred             ccccceEEECC-CcCEEEEecCCCcEEEEECCCC-ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence            78999999999 7777888888999999999876 677777788889999999999888888888999999999988777


Q ss_pred             eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (389)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (389)
                      ..+..+.     ..+.+++|+|++++|++++.||.+++|+
T Consensus       255 ~~~~~~~-----~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         255 QTLSGHT-----NSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEccccC-----CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            7765332     3599999999999999999999999996

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.6e-36  Score=242.63  Aligned_cols=262  Identities=22%  Similarity=0.370  Sum_probs=225.0

Q ss_pred             CCeeEEEeeCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEe
Q 016458           99 SQKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS  177 (389)
Q Consensus        99 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  177 (389)
                      .+.+..+.+|...|+++.|.| .+.+|++++.|+.|+||++....      .+.+++.+|..+|.+++|+++| ..|+++
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~------~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~  276 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR------RCLRTFKGHRKPVRDASFNNCG-TSFLSA  276 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc------ceehhhhcchhhhhhhhccccC-Ceeeee
Confidence            355778889999999999999 89999999999999999998722      3789999999999999999998 789999


Q ss_pred             eCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEE
Q 016458          178 SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK  257 (389)
Q Consensus       178 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~  257 (389)
                      +.|+.|++||.++|++...+      .....++++.++|++.+.+++|+.|+.|+.||+|++ +.++.+..|-+.|..+.
T Consensus       277 sfD~~lKlwDtETG~~~~~f------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqeYd~hLg~i~~i~  349 (503)
T KOG0282|consen  277 SFDRFLKLWDTETGQVLSRF------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQEYDRHLGAILDIT  349 (503)
T ss_pred             ecceeeeeeccccceEEEEE------ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHHHHhhhhheeeeE
Confidence            99999999999999999998      455678999999977799999999999999999998 88889999999999999


Q ss_pred             EecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC
Q 016458          258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS  337 (389)
Q Consensus       258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  337 (389)
                      |-++|+++++.+.|+.++||+.+.+..+.........    ...++..+|+++++++-+.|+.|.+|.+...-....-+ 
T Consensus       350 F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~h----smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK-  424 (503)
T KOG0282|consen  350 FVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMH----TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK-  424 (503)
T ss_pred             EccCCceEeeeccCccEEEEEcCCCccchhhcchhhc----cCcceecCCCCCeehhhccCceEEEEecccccccCHhh-
Confidence            9999999999999999999999887766655443222    36789999999999999999999999865432221111 


Q ss_pred             cCCCCC--CCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          338 LQNSHE--GRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       338 ~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      ...+|.  +.-..+.|||||.+|++|+.||.+.+    ||.++-++..
T Consensus       425 ~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~----wdwkt~kl~~  468 (503)
T KOG0282|consen  425 RFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNF----WDWKTTKLVS  468 (503)
T ss_pred             hhcceeccCceeeEEEcCCCCeEEeecCCccEEE----eechhhhhhh
Confidence            114554  45667899999999999999999999    9999877653

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.5e-32  Score=198.68  Aligned_cols=299  Identities=21%  Similarity=0.321  Sum_probs=240.5

Q ss_pred             CcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC------CC-----e----eEEEeeCCCcEEEEEECC
Q 016458           55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT------SQ-----K----THAIKLPCAWVMTCAFSP  119 (389)
Q Consensus        55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~------~~-----~----~~~~~~~~~~v~~~~~~~  119 (389)
                      +.+.++..|. .+..|.+++|+|.|.+.++|+...+.+|-....      +.     +    ...-+.|.+.|.|.+|+|
T Consensus        21 ~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~   99 (350)
T KOG0641|consen   21 KHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP   99 (350)
T ss_pred             cceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence            3456665654 466799999999999999999999998874321      11     1    122345778999999999


Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC---CCcEEEEee-CCCeEEEEeCCCCeeEE
Q 016458          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD---EDTHLITSS-GDQTCVLWDITTGLRTS  195 (389)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~-~dg~i~iwd~~~~~~~~  195 (389)
                      .|.++++|+.|..|++..++.....  ..-....+..|.+.|..++|..+   +..+|++++ .|..|++-|...++...
T Consensus       100 ~geliatgsndk~ik~l~fn~dt~~--~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~  177 (350)
T KOG0641|consen  100 CGELIATGSNDKTIKVLPFNADTCN--ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH  177 (350)
T ss_pred             ccCeEEecCCCceEEEEeccccccc--ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce
Confidence            9999999999999999988764421  11234456789999999999764   335666655 48889999999999998


Q ss_pred             EecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee--e-----ccceEEEEEecCCCEEEEE
Q 016458          196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--H-----EGDVNTVKFFPDGNRFGTG  268 (389)
Q Consensus       196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~-----~~~i~~~~~~~~~~~l~~~  268 (389)
                      .+     .+|.+.|.++---  ++-++++|+.|.+|++||++-. .++..+..  |     ...|.+++..|.|++|++|
T Consensus       178 a~-----sghtghilalysw--n~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsgrll~sg  249 (350)
T KOG0641|consen  178 AL-----SGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG  249 (350)
T ss_pred             ee-----cCCcccEEEEEEe--cCcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence            88     7999999887533  7789999999999999999977 55555432  2     2568999999999999999


Q ss_pred             ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc----eEEEeecCcCCCCCC
Q 016458          269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----KVVLNLGSLQNSHEG  344 (389)
Q Consensus       269 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~~  344 (389)
                      ..|....+||++.++.++.+..+...     |.++.|+|...|+++++.|..|++-|++..    -++...    ..|..
T Consensus       250 ~~dssc~lydirg~r~iq~f~phsad-----ir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv----~ehkd  320 (350)
T KOG0641|consen  250 HADSSCMLYDIRGGRMIQRFHPHSAD-----IRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV----AEHKD  320 (350)
T ss_pred             cCCCceEEEEeeCCceeeeeCCCccc-----eeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE----EeccC
Confidence            99999999999999999998776554     999999999999999999999999998632    122222    56888


Q ss_pred             CeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          345 RITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       345 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      .+..+.|+|..-.+++.+.|.++.+    |-+.
T Consensus       321 k~i~~rwh~~d~sfisssadkt~tl----wa~~  349 (350)
T KOG0641|consen  321 KAIQCRWHPQDFSFISSSADKTATL----WALN  349 (350)
T ss_pred             ceEEEEecCccceeeeccCcceEEE----eccC
Confidence            8889999999888999999999999    9764

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=5.3e-32  Score=236.86  Aligned_cols=257  Identities=16%  Similarity=0.223  Sum_probs=200.7

Q ss_pred             EecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCC-CcEEEEecCCCcEEEEeCCCCCCC-CCCCcceeeecccccceE
Q 016458           85 ASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDK-DGNLPVSRMLSGHKGYVS  162 (389)
Q Consensus        85 ~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~v~  162 (389)
                      |+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||.|++|++...... .........+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            567889999998888888889999999999999996 789999999999999999764211 001123446788999999


Q ss_pred             EEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc
Q 016458          163 CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA  242 (389)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  242 (389)
                      +++|+|++..++++++.|+.|++||++++.....+      .+...|.+++|+| ++.+|++++.|+.|++||++++ ..
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i------~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg-~~  201 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI------NMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQ-EI  201 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE------ecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCC-cE
Confidence            99999998666789999999999999998877665      2456899999999 8889999999999999999987 77


Q ss_pred             eeEEeeeccceEEE-----EEecCCCEEEEEecCC----eEEEEECCC-CceeeEeeccCCCCCCCCeeEEEeCCCCCEE
Q 016458          243 VRTFHGHEGDVNTV-----KFFPDGNRFGTGSDDG----TCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLL  312 (389)
Q Consensus       243 ~~~~~~~~~~i~~~-----~~~~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (389)
                      +..+.+|.+.+...     .|++++.+|++++.|+    .|++||++. ..++.......   ....+......++|.++
T Consensus       202 i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~---~~~~L~p~~D~~tg~l~  278 (568)
T PTZ00420        202 ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN---ASAPLIPHYDESTGLIY  278 (568)
T ss_pred             EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC---CccceEEeeeCCCCCEE
Confidence            78888998765432     3458889999988774    799999995 44444432221   12223444445668899


Q ss_pred             EEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458          313 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (389)
Q Consensus       313 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (389)
                      ++|..|+.|++|++..+. +..+..  ..+..++.+++|.|..
T Consensus       279 lsGkGD~tIr~~e~~~~~-~~~l~~--~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        279 LIGKGDGNCRYYQHSLGS-IRKVNE--YKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEEECCCeEEEEEccCCc-EEeecc--cccCCCccceEEcccc
Confidence            999999999999998764 333332  2466788999999964

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.7e-32  Score=210.08  Aligned_cols=273  Identities=21%  Similarity=0.329  Sum_probs=222.7

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCC
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG  146 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  146 (389)
                      .+.|+.|.|+|.++.|++++.||++++|+.........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++.    
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~----   86 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN----   86 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc----
Confidence            457999999999999999999999999999887554444 4678899999987 5678999999999999999865    


Q ss_pred             CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee
Q 016458          147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS  226 (389)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  226 (389)
                          ...+..|...|.|+.+++.. ..+++|+.|++|++||.+.......+      .....|.++..   .++.|++|+
T Consensus        87 ----~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~------d~~kkVy~~~v---~g~~LvVg~  152 (323)
T KOG1036|consen   87 ----EDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTF------DQGKKVYCMDV---SGNRLVVGT  152 (323)
T ss_pred             ----ceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEecccccccccc------ccCceEEEEec---cCCEEEEee
Confidence                45667899999999999865 68999999999999999985555554      34457888877   457888999


Q ss_pred             CCCceEEEeCCCCCcceeEE-eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCC----ceeeEeeccCCC----CCC
Q 016458          227 CDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG----HQLQVYYQQHGE----NEI  297 (389)
Q Consensus       227 ~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~----~~~  297 (389)
                      .+..+.+||+++...+.+.. ..-+-.++|+++-|++.-+++++-||.|.+=.++..    .....+..+...    ...
T Consensus       153 ~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~  232 (323)
T KOG1036|consen  153 SDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII  232 (323)
T ss_pred             cCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence            99999999999875554222 223457899999998888999999999988776655    333444433322    223


Q ss_pred             CCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458          298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  363 (389)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  363 (389)
                      .+|++++|+|-...|++|+.||.|.+||+.+.+.+..+    ..-...|.+++|+.||..||+|+.
T Consensus       233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~----~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL----AKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEeceeEeccccceEEecCCCceEEEccCcchhhhhhc----cCCCCceEEEEeccCCCeEEEEec
Confidence            47999999999999999999999999999999999988    556778999999999999999874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.7e-34  Score=214.60  Aligned_cols=267  Identities=25%  Similarity=0.444  Sum_probs=227.0

Q ss_pred             cCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcE
Q 016458           44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS  123 (389)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  123 (389)
                      ..+..|..-.-....-+-+|.||+++|.....+.+...-|+++.|-+-++||.-+|..++.+. |..-|.+++|+.|.++
T Consensus        36 ~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~  114 (334)
T KOG0278|consen   36 SKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNY  114 (334)
T ss_pred             ccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchh
Confidence            334444444445566778999999999999999998889999999999999999999998876 5567999999999999


Q ss_pred             EEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccC
Q 016458          124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS  203 (389)
Q Consensus       124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  203 (389)
                      |++|+.+..++|||++.++.      ....+.+|.+.|..+.|.... +.+++++.|++||+||.+++..+..+      
T Consensus       115 lltgg~ekllrvfdln~p~A------pp~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~sL------  181 (334)
T KOG0278|consen  115 LLTGGQEKLLRVFDLNRPKA------PPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQSL------  181 (334)
T ss_pred             hhccchHHHhhhhhccCCCC------CchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEEEE------
Confidence            99999999999999998553      456678999999999999875 78899899999999999999999987      


Q ss_pred             CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458          204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (389)
Q Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (389)
                      ....+|+++.+++ +++++.+ ...+.|.+||..+. ..++.+. ....|.+..++|+...+++|+.|+.++.||..++.
T Consensus       182 ~~~s~VtSlEvs~-dG~ilTi-a~gssV~Fwdaksf-~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge  257 (334)
T KOG0278|consen  182 EFNSPVTSLEVSQ-DGRILTI-AYGSSVKFWDAKSF-GLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE  257 (334)
T ss_pred             ecCCCCcceeecc-CCCEEEE-ecCceeEEeccccc-cceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCc
Confidence            5677899999998 7766554 55788999999987 5666554 34568999999999999999999999999999999


Q ss_pred             eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE
Q 016458          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  332 (389)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  332 (389)
                      .+..+.    ..+..+|.++.|+|+|...++|+.||+|++|.+..++..
T Consensus       258 Ei~~~n----kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  258 EIGSYN----KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             eeeecc----cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            888752    233446999999999999999999999999998766554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-33  Score=229.15  Aligned_cols=255  Identities=23%  Similarity=0.353  Sum_probs=220.1

Q ss_pred             cCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCC-CcEEEEecCC
Q 016458           52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT-GQSVACGGLD  130 (389)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d  130 (389)
                      ++.......+++.-.+..|.++.|..||++||+|...|.|+|||..+...+..+..|..++..+.|+|+ +..+++|+.|
T Consensus        53 y~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd  132 (487)
T KOG0310|consen   53 YSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD  132 (487)
T ss_pred             EecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCC
Confidence            334444555566678889999999999999999999999999997776778889999999999999995 5667788889


Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCe
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADV  209 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v  209 (389)
                      +.+++||+.+..       ....+.+|++.|.|.+|+|..+.++++|+.||.|++||++.. ..+..+      .|..+|
T Consensus       133 ~v~k~~d~s~a~-------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el------nhg~pV  199 (487)
T KOG0310|consen  133 KVVKYWDLSTAY-------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL------NHGCPV  199 (487)
T ss_pred             ceEEEEEcCCcE-------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe------cCCCce
Confidence            999999998743       456789999999999999998889999999999999999987 555555      799999


Q ss_pred             eEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEee
Q 016458          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (389)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (389)
                      .++.+.| ++.++++++ ...+++||+-++.+.+.....|...|+|+++..++..|++++-|+.+++||+.+.+.+..+.
T Consensus       200 e~vl~lp-sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~  277 (487)
T KOG0310|consen  200 ESVLALP-SGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK  277 (487)
T ss_pred             eeEEEcC-CCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee
Confidence            9999999 777888776 46899999998877777777799999999999999999999999999999988877777665


Q ss_pred             ccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      ...      +|.+++.+|++..+++|..||.+.+-+..
T Consensus       278 ~~~------pvLsiavs~dd~t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  278 YPG------PVLSIAVSPDDQTVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             ccc------ceeeEEecCCCceEEEecccceeeeehhh
Confidence            533      49999999999999999999988777443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=4.3e-33  Score=218.92  Aligned_cols=265  Identities=24%  Similarity=0.382  Sum_probs=218.7

Q ss_pred             CCCcccCCCcceeeeecccccCcEEEEEEcCCCC---eEEEEecCCcEEEEeCCCCCe----eEEEeeCCCcEEEEEECC
Q 016458           47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERN---RIVSASQDGRLIVWNALTSQK----THAIKLPCAWVMTCAFSP  119 (389)
Q Consensus        47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~---~l~~~~~dg~v~iw~~~~~~~----~~~~~~~~~~v~~~~~~~  119 (389)
                      .....|+. ..+....+.||.++|.+++|.....   .|++++.|.++++|.++.++.    +....+|...|.++...+
T Consensus       125 g~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~  203 (423)
T KOG0313|consen  125 GTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS  203 (423)
T ss_pred             CeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC
Confidence            33344443 3577889999999999999865443   599999999999999877654    333458999999999999


Q ss_pred             CCcEEEEecCCCcEEEEeCCCCC------------------CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC
Q 016458          120 TGQSVACGGLDSVCSIFNLNSPT------------------DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ  181 (389)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  181 (389)
                      +|..+++|+.|..+.+|+.....                  ...........+.+|..+|.++.|++.  ..+++++.|.
T Consensus       204 sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDH  281 (423)
T KOG0313|consen  204 SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDH  281 (423)
T ss_pred             CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccc
Confidence            99999999999999999943311                  011223355678899999999999994  5899999999


Q ss_pred             eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc--ceeEEeeeccceEEEEEe
Q 016458          182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNTVKFF  259 (389)
Q Consensus       182 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~~~  259 (389)
                      +|+.||+.++.....+      .....+.++..+| ..++|++|+.|..|++||.|++..  ...++.+|.+.|.++.|+
T Consensus       282 TIk~WDletg~~~~~~------~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkws  354 (423)
T KOG0313|consen  282 TIKVWDLETGGLKSTL------TTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWS  354 (423)
T ss_pred             eEEEEEeecccceeee------ecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecC
Confidence            9999999999988886      4566899999999 889999999999999999998743  456788999999999999


Q ss_pred             c-CCCEEEEEecCCeEEEEECCCCc-eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          260 P-DGNRFGTGSDDGTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       260 ~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      | +...|++++.|+++++||+++.+ ++..+..+..     .|.++.|+ ++.++++|+.|.+|+|+...
T Consensus       355 p~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D-----Kvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  355 PTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND-----KVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc-----eEEEEecc-CCceEEeccCcceEEEeccc
Confidence            9 55678999999999999999987 7777755543     49999997 56799999999999998643

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=1.2e-32  Score=240.03  Aligned_cols=267  Identities=27%  Similarity=0.433  Sum_probs=234.6

Q ss_pred             cccCCCCCcccCCCcceeeee-cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCC
Q 016458           42 SRSQGRAPVSFGPTDLVCCRT-LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT  120 (389)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~  120 (389)
                      ..+.......|+..+...+.. |.||.+.|.++++..-++.|++|+.|.++++||..+|++...+.+|.+.|.++...  
T Consensus       223 ~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--  300 (537)
T KOG0274|consen  223 SGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--  300 (537)
T ss_pred             ecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--
Confidence            344445556899998888888 99999999999998877899999999999999999999999999999999988764  


Q ss_pred             CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc
Q 016458          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE  200 (389)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  200 (389)
                      ...+++|+.|.+|++|++.++.       ....+.+|.++|.++...  + .++++|+.|++|++||+.+++++..+   
T Consensus       301 ~~~~~sgs~D~tVkVW~v~n~~-------~l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~sl---  367 (537)
T KOG0274|consen  301 PFLLVSGSRDNTVKVWDVTNGA-------CLNLLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLKSL---  367 (537)
T ss_pred             CceEeeccCCceEEEEeccCcc-------eEEEeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceeeeee---
Confidence            5577889999999999999766       777888899999999998  2 68999999999999999999999999   


Q ss_pred             ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR  280 (389)
Q Consensus       201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  280 (389)
                        .+|...|.++.+.+ . ..+++|+.|+.|++||+++..+++..+.+|..-+..+.+  .+++|++++.|+.|++||..
T Consensus       368 --~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~  441 (537)
T KOG0274|consen  368 --SGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAE  441 (537)
T ss_pred             --cCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecc
Confidence              78999999998865 3 889999999999999999875788899999998877766  57799999999999999999


Q ss_pred             CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458          281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (389)
                      +++++..+...    +...+..+++.  ...+++++.||.+.+||+++++....+
T Consensus       442 ~~~~~~~~~~~----~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  442 EGECLRTLEGR----HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             cCceeeeeccC----CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence            99999988774    22247887775  467888999999999999999988776

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-31  Score=206.42  Aligned_cols=259  Identities=20%  Similarity=0.293  Sum_probs=212.7

Q ss_pred             CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC
Q 016458          100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG  179 (389)
Q Consensus       100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  179 (389)
                      +..+.+....+.|.++.|+++|..+++++.|..+++||...++       ...++..++..+..++|.... +.++.++.
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~-------~~~ti~skkyG~~~~~Fth~~-~~~i~sSt   76 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK-------QVKTINSKKYGVDLACFTHHS-NTVIHSST   76 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc-------eeeEeecccccccEEEEecCC-ceEEEccC
Confidence            3444555566789999999999999999999999999999876       667777777788889998875 45666665


Q ss_pred             --CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEE
Q 016458          180 --DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK  257 (389)
Q Consensus       180 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~  257 (389)
                        |.+|+..++.+.+.++.+     .+|...|.+++.+| .++.+++++.|++|++||++.. ++...+..  ..-..++
T Consensus        77 k~d~tIryLsl~dNkylRYF-----~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~-~cqg~l~~--~~~pi~A  147 (311)
T KOG1446|consen   77 KEDDTIRYLSLHDNKYLRYF-----PGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVK-KCQGLLNL--SGRPIAA  147 (311)
T ss_pred             CCCCceEEEEeecCceEEEc-----CCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCC-CCceEEec--CCCccee
Confidence              899999999999999999     89999999999999 6689999999999999999966 55544433  3345589


Q ss_pred             EecCCCEEEEEecCCeEEEEECCCC--ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458          258 FFPDGNRFGTGSDDGTCRLFDIRTG--HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       258 ~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (389)
                      |.|+|-++|++...+.|++||++..  .+...+....  +.....+.+.|||||++++.++..+.+++.|.-+|....++
T Consensus       148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~--~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tf  225 (311)
T KOG1446|consen  148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD--NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTF  225 (311)
T ss_pred             ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC--CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeE
Confidence            9999999999998889999999974  3344443332  33345899999999999999999999999999999988888


Q ss_pred             cCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          336 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       336 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      ........-+ -..+|+||++++++|+.||+|.+    |++++|..+
T Consensus       226 s~~~~~~~~~-~~a~ftPds~Fvl~gs~dg~i~v----w~~~tg~~v  267 (311)
T KOG1446|consen  226 SGYPNAGNLP-LSATFTPDSKFVLSGSDDGTIHV----WNLETGKKV  267 (311)
T ss_pred             eeccCCCCcc-eeEEECCCCcEEEEecCCCcEEE----EEcCCCcEe
Confidence            5433332223 56789999999999999999999    999998654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-33  Score=224.31  Aligned_cols=251  Identities=18%  Similarity=0.309  Sum_probs=212.7

Q ss_pred             cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeC-CCcEEEEEECCCCcEEEEecCCCcEE
Q 016458           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP-CAWVMTCAFSPTGQSVACGGLDSVCS  134 (389)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~  134 (389)
                      .++..+++.||..+|..+.||||.++|++++.|..+.+||..+|.....+... ...+.+++|.|||..+++|+.|+.|.
T Consensus       258 ~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~  337 (519)
T KOG0293|consen  258 HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII  337 (519)
T ss_pred             ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence            46778999999999999999999999999999999999999999988877644 56799999999999999999999999


Q ss_pred             EEeCCCCCCCCCCCcceeeeccc-ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458          135 IFNLNSPTDKDGNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (389)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  213 (389)
                      .||++...        .....+- ...|.+++..+|| .++++.+.|..|++++.++.......      ....+|++++
T Consensus       338 ~wdlDgn~--------~~~W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr~li------se~~~its~~  402 (519)
T KOG0293|consen  338 MWDLDGNI--------LGNWEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDRGLI------SEEQPITSFS  402 (519)
T ss_pred             EecCCcch--------hhcccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhhccc------cccCceeEEE
Confidence            99998743        1122221 2568999999998 67888889999999999887666543      4567899999


Q ss_pred             eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccc--eEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEeec
Q 016458          214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD--VNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ  290 (389)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  290 (389)
                      .+. +++++++.-.+..+++||+... ..++.+.+|...  +..-+|-. +..++++|+.|+.|+||+..+++++..+..
T Consensus       403 iS~-d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG  480 (519)
T KOG0293|consen  403 ISK-DGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG  480 (519)
T ss_pred             EcC-CCcEEEEEcccCeeEEeecchh-hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence            998 8899999999999999999966 788888888764  44445654 558999999999999999999999999977


Q ss_pred             cCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEccc
Q 016458          291 QHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLL  328 (389)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~  328 (389)
                      +..     .|++++|+|... ++|+++.||+|+||....
T Consensus       481 Hs~-----~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  481 HSK-----TVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             Ccc-----eeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            655     499999999655 889999999999998653

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=5.5e-33  Score=223.38  Aligned_cols=258  Identities=17%  Similarity=0.316  Sum_probs=213.9

Q ss_pred             cccccCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCC----------eeEEEeeCCCcEEEEEECCC-CcEEEEecCC
Q 016458           63 LQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQ----------KTHAIKLPCAWVMTCAFSPT-GQSVACGGLD  130 (389)
Q Consensus        63 l~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~----------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d  130 (389)
                      ..-|.+.|+.+.+-|+.. .+|+.+..+.|.|||..+-.          +-..+.+|...-..++|++. .-.|++++.|
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            345999999999999664 67778889999999985422          22367788877788999984 4578999999


Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC--CeeEEEecCcccCCCCCC
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT--GLRTSVFGGEFQSGHTAD  208 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~  208 (389)
                      +.|++||+...............+.+|...|..++|++....+|++++.|+.+.|||+++  .+.....     ..|...
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~-----~ah~~~  274 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV-----KAHSAE  274 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc-----cccCCc
Confidence            999999999866544456677889999999999999999889999999999999999995  3333333     789999


Q ss_pred             eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceee-
Q 016458          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQ-  286 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~-  286 (389)
                      +.|++|+|.++.+|++|+.|++|.+||+|+...++..+.+|...|.++.|+| ....|++++.|+.+.+||+..-.... 
T Consensus       275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~  354 (422)
T KOG0264|consen  275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS  354 (422)
T ss_pred             eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence            9999999999999999999999999999999899999999999999999999 45678999999999999987532221 


Q ss_pred             ----------EeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcc
Q 016458          287 ----------VYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       287 ----------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~  327 (389)
                                .+..+  .+|...|..+.|+|+.. .|++.+.|+.+.||.+.
T Consensus       355 ~eda~dgppEllF~H--gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  355 PEDAEDGPPELLFIH--GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             hhhhccCCcceeEEe--cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                      11111  34566799999999988 56677899999999975

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.4e-33  Score=216.50  Aligned_cols=260  Identities=23%  Similarity=0.314  Sum_probs=222.8

Q ss_pred             CCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCC-CCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458          109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK-DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (389)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  187 (389)
                      .+.+.|..|+|||++|++|+.||-|.+|+..+++.+ .........+..+..+|.|+.|+.+. .++++|+.||.|++|.
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWr  291 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWR  291 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEEEEE
Confidence            456889999999999999999999999999987632 22333444566788999999999997 7899999999999999


Q ss_pred             CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEE
Q 016458          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT  267 (389)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  267 (389)
                      +++|.++..+.    ..|...|+++.|+. ++..+++++.|.++++.-++++ +.+..+++|.+.|+...|.++|.++++
T Consensus       292 i~tG~ClRrFd----rAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSG-K~LKEfrGHsSyvn~a~ft~dG~~iis  365 (508)
T KOG0275|consen  292 IETGQCLRRFD----RAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSG-KCLKEFRGHSSYVNEATFTDDGHHIIS  365 (508)
T ss_pred             EecchHHHHhh----hhhccCeeEEEEcc-CcchhhcccccceEEEeccccc-hhHHHhcCccccccceEEcCCCCeEEE
Confidence            99999999884    58999999999998 7778899999999999999998 899999999999999999999999999


Q ss_pred             EecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC-CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCe
Q 016458          268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI  346 (389)
Q Consensus       268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  346 (389)
                      ++.||+|++|+..+.+++.++....   ...+|+++..-|.+ ..++++...++|+|.++ .|+.+..+..- ....+..
T Consensus       366 aSsDgtvkvW~~KtteC~~Tfk~~~---~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSG-kREgGdF  440 (508)
T KOG0275|consen  366 ASSDGTVKVWHGKTTECLSTFKPLG---TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSG-KREGGDF  440 (508)
T ss_pred             ecCCccEEEecCcchhhhhhccCCC---CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccC-CccCCce
Confidence            9999999999999999998887643   34468888777754 47888888899999997 57777777543 2334556


Q ss_pred             eEEEECCCCCeEEeeeCCCeeEEeecceecccCcccCc
Q 016458          347 TCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPW  384 (389)
Q Consensus       347 ~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~~  384 (389)
                      .+.+.+|.|.++.+.+.|+.++.    +.+.+|++...
T Consensus       441 i~~~lSpkGewiYcigED~vlYC----F~~~sG~LE~t  474 (508)
T KOG0275|consen  441 INAILSPKGEWIYCIGEDGVLYC----FSVLSGKLERT  474 (508)
T ss_pred             EEEEecCCCcEEEEEccCcEEEE----EEeecCceeee
Confidence            67788999999999999999999    99999988654

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=2.3e-31  Score=231.97  Aligned_cols=256  Identities=18%  Similarity=0.218  Sum_probs=193.2

Q ss_pred             cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCC-----CCCC-CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEE
Q 016458          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD-----KDGN-LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV  184 (389)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~-----~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  184 (389)
                      .|.....++++..+++++.+.....|+...+..     ..+. ......+.+|.+.|.+++|+|.++.+|++|+.|++|+
T Consensus        22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk  101 (493)
T PTZ00421         22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM  101 (493)
T ss_pred             ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence            344555566666666666666666666543210     0000 0112346789999999999994347899999999999


Q ss_pred             EEeCCCCe-------eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEE
Q 016458          185 LWDITTGL-------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK  257 (389)
Q Consensus       185 iwd~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~  257 (389)
                      +||+.++.       .+..+     .+|...|.+++|+|...++|++++.|+.|++||+++. .....+..|...|.+++
T Consensus       102 IWdi~~~~~~~~~~~~l~~L-----~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~~~V~sla  175 (493)
T PTZ00421        102 GWGIPEEGLTQNISDPIVHL-----QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-KAVEVIKCHSDQITSLE  175 (493)
T ss_pred             EEecCCCccccccCcceEEe-----cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC-eEEEEEcCCCCceEEEE
Confidence            99997653       33444     6899999999999966689999999999999999987 67778888999999999


Q ss_pred             EecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe----cCCcEEEEEcccceEEE
Q 016458          258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY----SNGDCYVWDTLLAKVVL  333 (389)
Q Consensus       258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~  333 (389)
                      |+|++.+|++++.|+.|++||+++++.+..+..+...    ....+.|.+++..+++++    .|+.|++||+++.....
T Consensus       176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~----~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~  251 (493)
T PTZ00421        176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA----KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY  251 (493)
T ss_pred             EECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC----cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence            9999999999999999999999999887766543322    245678888888777654    47899999998754332


Q ss_pred             eecCcCCCCCCCeeEEEECCCCCeEEeee-CCCeeEEeecceecccCccc
Q 016458          334 NLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       334 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~W~~~~~~~~  382 (389)
                      ....  ..+...+....|++++.+|++++ .|+.|++    |++.++++.
T Consensus       252 ~~~~--~d~~~~~~~~~~d~d~~~L~lggkgDg~Iri----wdl~~~~~~  295 (493)
T PTZ00421        252 STVD--LDQSSALFIPFFDEDTNLLYIGSKGEGNIRC----FELMNERLT  295 (493)
T ss_pred             eEec--cCCCCceEEEEEcCCCCEEEEEEeCCCeEEE----EEeeCCceE
Confidence            2210  12334566678999999999988 4999999    999998754

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.5e-32  Score=204.28  Aligned_cols=251  Identities=20%  Similarity=0.297  Sum_probs=215.1

Q ss_pred             EEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe
Q 016458          103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT  182 (389)
Q Consensus       103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  182 (389)
                      ..++.|...+.+++|+.+|..|++|+.|+++.+|+++...     ........+|.+.|-.++|+|..+.+|++++.|.+
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-----~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~   88 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-----FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKT   88 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh-----hhhhhcccCCCcchhhheeCCCCCcceEEecCCce
Confidence            3456777889999999999999999999999999998742     23445567899999999999998899999999999


Q ss_pred             EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC
Q 016458          183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG  262 (389)
Q Consensus       183 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (389)
                      |++||++.+++....      .....-.-+.|+| ++.++++++.|..|.+.|.++. +...... ....+..++|+.++
T Consensus        89 ir~wd~r~~k~~~~i------~~~~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~-~~~~~~~-~~~e~ne~~w~~~n  159 (313)
T KOG1407|consen   89 IRIWDIRSGKCTARI------ETKGENINITWSP-DGEYIAVGNKDDRITFIDARTY-KIVNEEQ-FKFEVNEISWNNSN  159 (313)
T ss_pred             EEEEEeccCcEEEEe------eccCcceEEEEcC-CCCEEEEecCcccEEEEEeccc-ceeehhc-ccceeeeeeecCCC
Confidence            999999999999887      3344455678999 8889999999999999999976 4443332 34557889999888


Q ss_pred             CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCC
Q 016458          263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH  342 (389)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  342 (389)
                      ++++.....|.|.|......+++..+..+...     ..++.|+|+|+|+|+|+.|-.+.+||+...-+...+    ..+
T Consensus       160 d~Fflt~GlG~v~ILsypsLkpv~si~AH~sn-----CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i----sRl  230 (313)
T KOG1407|consen  160 DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSN-----CICIEFDPDGRYFATGSADALVSLWDVDELICERCI----SRL  230 (313)
T ss_pred             CEEEEecCCceEEEEeccccccccccccCCcc-----eEEEEECCCCceEeeccccceeeccChhHhhhheee----ccc
Confidence            88888888899999999988888888766543     899999999999999999999999999988888888    788


Q ss_pred             CCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458          343 EGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       343 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~  380 (389)
                      +-+|..+.|+.||++||+|+.|..|-|    =++++|.
T Consensus       231 dwpVRTlSFS~dg~~lASaSEDh~IDI----A~vetGd  264 (313)
T KOG1407|consen  231 DWPVRTLSFSHDGRMLASASEDHFIDI----AEVETGD  264 (313)
T ss_pred             cCceEEEEeccCcceeeccCccceEEe----EecccCC
Confidence            999999999999999999999999988    6666664

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.6e-33  Score=231.81  Aligned_cols=294  Identities=21%  Similarity=0.408  Sum_probs=240.0

Q ss_pred             cccCcEE---EEEEcC-CCCeEEEEecCCcEEEEeCCCCC------eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEE
Q 016458           65 GHAGKVY---SLDWTS-ERNRIVSASQDGRLIVWNALTSQ------KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCS  134 (389)
Q Consensus        65 ~h~~~v~---~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  134 (389)
                      .|...|.   ++..+. .+++|+||+.||.|++|+.....      ....++.|..+|+.++...+++.|++++.|-+|+
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK   98 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK   98 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence            3455555   555554 55679999999999999875432      3667788999999999999999999999999999


Q ss_pred             EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee--EEEecC----cccCCCCCC
Q 016458          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR--TSVFGG----EFQSGHTAD  208 (389)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~----~~~~~~~~~  208 (389)
                      +|+.....     ..+..++..|...|.|+++......++++||-|+.|.+||+.++..  +..+..    ....++...
T Consensus        99 ~W~~~~~~-----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s  173 (735)
T KOG0308|consen   99 VWNAHKDN-----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS  173 (735)
T ss_pred             EeecccCc-----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence            99987632     2367788899999999999433347899999999999999998732  222211    111377889


Q ss_pred             eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEe
Q 016458          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY  288 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  288 (389)
                      |++++.++ .+..+++|+..+.+++||.++. +.+..+.+|...|..+..++||..+++++.||+|++||+...+++.++
T Consensus       174 iYSLA~N~-t~t~ivsGgtek~lr~wDprt~-~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~  251 (735)
T KOG0308|consen  174 IYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTC-KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY  251 (735)
T ss_pred             eeeeecCC-cceEEEecCcccceEEeccccc-cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence            99999998 7789999999999999999998 777788899999999999999999999999999999999999999998


Q ss_pred             eccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458          289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK  368 (389)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  368 (389)
                      ..+...     +.++..+|+-.++++|+.||.|+.=|+++......+    -....+|..+..+.+.+-+-+++.|+.|+
T Consensus       252 ~vH~e~-----VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli----ck~daPv~~l~~~~~~~~~WvtTtds~I~  322 (735)
T KOG0308|consen  252 IVHKEG-----VWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI----CKEDAPVLKLHLHEHDNSVWVTTTDSSIK  322 (735)
T ss_pred             EeccCc-----eEEEeeCCCcceEEecCCCCcEEecccCCchhheEe----ecCCCchhhhhhccccCCceeeeccccce
Confidence            776543     999999999999999999999999999885333333    34556788888876555667888899999


Q ss_pred             Eeecceeccc
Q 016458          369 VNLGFWRVQE  378 (389)
Q Consensus       369 i~~~~W~~~~  378 (389)
                      -    |....
T Consensus       323 r----W~~~~  328 (735)
T KOG0308|consen  323 R----WKLEP  328 (735)
T ss_pred             e----cCCcc
Confidence            8    87654

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=8.9e-31  Score=229.21  Aligned_cols=235  Identities=16%  Similarity=0.225  Sum_probs=181.3

Q ss_pred             ecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee--------EEEec
Q 016458          127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR--------TSVFG  198 (389)
Q Consensus       127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------~~~~~  198 (389)
                      |+.++.|++|+....       .....+.+|.+.|.+++|+|+.+.+|++|+.||.|++||+.++..        ...+ 
T Consensus        50 GG~~gvI~L~~~~r~-------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-  121 (568)
T PTZ00420         50 GGLIGAIRLENQMRK-------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-  121 (568)
T ss_pred             CCceeEEEeeecCCC-------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-
Confidence            566788999987652       256778899999999999998557999999999999999986421        2233 


Q ss_pred             CcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEE
Q 016458          199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (389)
Q Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (389)
                          .+|...|.+++|+|....++++++.|+.|++||+++. .....+. |...|.+++|+|+|.+|++++.|+.|++||
T Consensus       122 ----~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg-~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD  195 (568)
T PTZ00420        122 ----KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE-KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIID  195 (568)
T ss_pred             ----ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC-cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEE
Confidence                5788999999999955556789999999999999987 4455554 667899999999999999999999999999


Q ss_pred             CCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC----cEEEEEccc-ceEEEeecCcCCCCCCCeeEEEECC
Q 016458          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----DCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSA  353 (389)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~  353 (389)
                      ++++..+..+..+.+......+....|++++.+|++++.|+    .|+|||++. .+++..+..  ..+.+.+......+
T Consensus       196 ~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l--d~~~~~L~p~~D~~  273 (568)
T PTZ00420        196 PRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI--DNASAPLIPHYDES  273 (568)
T ss_pred             CCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe--cCCccceEEeeeCC
Confidence            99998887776544321111223344678999999887764    699999985 455544411  33444444454556


Q ss_pred             CCCeEEeeeCCCeeEEeecceecccCcc
Q 016458          354 DGSALCTGSWDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       354 ~~~~l~~~~~dg~i~i~~~~W~~~~~~~  381 (389)
                      +|.++++|+.|+.|++    |++..+.+
T Consensus       274 tg~l~lsGkGD~tIr~----~e~~~~~~  297 (568)
T PTZ00420        274 TGLIYLIGKGDGNCRY----YQHSLGSI  297 (568)
T ss_pred             CCCEEEEEECCCeEEE----EEccCCcE
Confidence            7999999999999999    99987753

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.3e-33  Score=235.67  Aligned_cols=284  Identities=19%  Similarity=0.273  Sum_probs=229.6

Q ss_pred             CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee----EEEeeC---CCcEEEEEECC-CCcEEEEecCCCcEEEEeCC
Q 016458           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT----HAIKLP---CAWVMTCAFSP-TGQSVACGGLDSVCSIFNLN  139 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~----~~~~~~---~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~  139 (389)
                      ....+|..+++-..++.++.. .+.||.+......    ..+...   ...+..+.|.. ..++||+++.+|.|.+||+.
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            356677788998889888875 6788866543221    111111   12355677875 56889999999999999998


Q ss_pred             CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (389)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (389)
                      ...    .-+....+..|...+.++.|++..+++|++|+.||.|++||++.......+     ......|+.+.|+|..+
T Consensus       119 k~~----rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~-----~~nSESiRDV~fsp~~~  189 (839)
T KOG0269|consen  119 KSI----RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF-----RSNSESIRDVKFSPGYG  189 (839)
T ss_pred             ccc----cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-----cccchhhhceeeccCCC
Confidence            631    223566788999999999999999999999999999999999999888888     67888999999999999


Q ss_pred             cEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458          220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (389)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (389)
                      +.|+++...|.+.+||+|.+.++...+.+|.++|.|+.|+|++.+||+||.|+.|+|||..+.+........    ...+
T Consensus       190 ~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn----Tiap  265 (839)
T KOG0269|consen  190 NKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN----TIAP  265 (839)
T ss_pred             ceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe----ecce
Confidence            999999999999999999998999999999999999999999999999999999999999876544433332    2336


Q ss_pred             eeEEEeCCCCCE-EEEEe--cCCcEEEEEcccceEE-EeecCcCCCCCCCeeEEEECC-CCCeEEeeeCCCeeEE
Q 016458          300 VTSIAFSISGRL-LFAGY--SNGDCYVWDTLLAKVV-LNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKV  369 (389)
Q Consensus       300 i~~~~~~~~~~~-l~~~~--~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i  369 (389)
                      +.++.|-|..++ |++++  .|-.|+|||++..-.. .++    ..|...++.++|.. |...|.+++.||+|..
T Consensus       266 v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~----~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q  336 (839)
T KOG0269|consen  266 VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF----LEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ  336 (839)
T ss_pred             eeeeeeccCccchhhhhhccccceEEEEeeccccccceee----eccCccccceeccCCCceeeEeecCccHHHH
Confidence            999999998775 44443  3678999999865443 444    78999999999975 6678999999999875

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=100.00  E-value=2.5e-31  Score=224.36  Aligned_cols=285  Identities=26%  Similarity=0.423  Sum_probs=236.0

Q ss_pred             cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee--EEEeeCCCcEEE-EEECC-CCcEEEEecCCC
Q 016458           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT--HAIKLPCAWVMT-CAFSP-TGQSVACGGLDS  131 (389)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~~~~~dg  131 (389)
                      ..+..+.+.||+..|..+++.+.. .++++|.||++++|+-...+.+  ..+..|.+.|.. +++.+ ++-.+++|+.|.
T Consensus         3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~   81 (745)
T KOG0301|consen    3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT   81 (745)
T ss_pred             cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence            346778999999999999987654 8999999999999997655544  345667777776 78875 555699999999


Q ss_pred             cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeE
Q 016458          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS  211 (389)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  211 (389)
                      .|.+|...+..       ....+++|...|.++....++  .+++|+.|.++++|-+..  +...+     .+|...|.+
T Consensus        82 ~i~v~~~~~~~-------P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~--l~~~l-----~gH~asVWA  145 (745)
T KOG0301|consen   82 TIIVFKLSQAE-------PLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGE--LVYSL-----QGHTASVWA  145 (745)
T ss_pred             eEEEEecCCCC-------chhhhhccccceeeeecCCcC--ceEecccccceEEecchh--hhccc-----CCcchheee
Confidence            99999998755       678899999999999988765  399999999999998654  33445     799999999


Q ss_pred             EEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeecc
Q 016458          212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ  291 (389)
Q Consensus       212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  291 (389)
                      +...| .+ .+++|+.|.+|++|.-.   ..++++.+|...|+.+++-+++ .|++++.||.|+.|++ ++..+..+..+
T Consensus       146 v~~l~-e~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~gh  218 (745)
T KOG0301|consen  146 VASLP-EN-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGH  218 (745)
T ss_pred             eeecC-CC-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeecc
Confidence            99998 44 88999999999999863   7889999999999999999764 5889999999999999 67777776554


Q ss_pred             CCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEee
Q 016458          292 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNL  371 (389)
Q Consensus       292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~  371 (389)
                      ..     .+.++...+++..++++++|++++||+..  .....+    ......|.++.+-++|. +++|++||.|+|  
T Consensus       219 tn-----~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I----~lPttsiWsa~~L~NgD-Ivvg~SDG~VrV--  284 (745)
T KOG0301|consen  219 TN-----FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI----TLPTTSIWSAKVLLNGD-IVVGGSDGRVRV--  284 (745)
T ss_pred             ce-----EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEE----ecCccceEEEEEeeCCC-EEEeccCceEEE--
Confidence            43     48999988888999999999999999976  555555    33445899999888886 788999999999  


Q ss_pred             cceecccCc
Q 016458          372 GFWRVQEGA  380 (389)
Q Consensus       372 ~~W~~~~~~  380 (389)
                        |.....+
T Consensus       285 --fT~~k~R  291 (745)
T KOG0301|consen  285 --FTVDKDR  291 (745)
T ss_pred             --EEecccc
Confidence              8877543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=9.8e-32  Score=201.84  Aligned_cols=280  Identities=18%  Similarity=0.241  Sum_probs=222.2

Q ss_pred             cccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECC
Q 016458           40 GYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP  119 (389)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~  119 (389)
                      .++-..+..|..|-..+...+-++.||+++|.|++.+.+.+.|+||+.|.++++||+++|+.+..++.. .+|..+.|++
T Consensus        25 lFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~~Vk~~~F~~  103 (327)
T KOG0643|consen   25 LFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN-SPVKRVDFSF  103 (327)
T ss_pred             EEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-CeeEEEeecc
Confidence            345566788889999999999999999999999999999999999999999999999999999998866 5699999999


Q ss_pred             CCcEEEEecC-----CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE
Q 016458          120 TGQSVACGGL-----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT  194 (389)
Q Consensus       120 ~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  194 (389)
                      +|++++....     .+.|.++|++..........+...+..+.+.++.+.|.|-+ ..+++|..||.|.+||++++...
T Consensus       104 ~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~  182 (327)
T KOG0643|consen  104 GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKEL  182 (327)
T ss_pred             CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCcee
Confidence            9998887644     46799999986543222333455666677899999999997 78999999999999999998554


Q ss_pred             EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCe-
Q 016458          195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-  273 (389)
Q Consensus       195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-  273 (389)
                      ....    ..|...|+.+.+++ +..++++++.|.+-++||.++. ..++++. ...||++.+++|....++.|+.... 
T Consensus       183 v~s~----~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl-~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~  255 (327)
T KOG0643|consen  183 VDSD----EEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTL-EVLKTYT-TERPVNTAAISPLLDHVILGGGQEAM  255 (327)
T ss_pred             eech----hhhccccccccccC-CcceEEecccCccceeeeccce-eeEEEee-ecccccceecccccceEEecCCceee
Confidence            4432    57888999999999 8899999999999999999987 6666665 5779999999997777666653222 


Q ss_pred             -EEEEECCCCceeeEe-------eccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458          274 -CRLFDIRTGHQLQVY-------YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (389)
Q Consensus       274 -i~i~d~~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (389)
                       |.--+.+.++-...+       ....-..|.++|++++|+|+|+..++|+.||.|++.....
T Consensus       256 dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  256 DVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             eeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence             222222222211111       1111235666799999999999999999999999986543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.3e-31  Score=202.95  Aligned_cols=266  Identities=21%  Similarity=0.300  Sum_probs=215.4

Q ss_pred             cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc--EEEEecCCCcE
Q 016458           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ--SVACGGLDSVC  133 (389)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i  133 (389)
                      .+.+...+.+|.++|++++.+  +.++|+|+.|-+|+|||+.+......+-.|.+.|+++.|.+.-.  .|++|+.||.|
T Consensus        32 ~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i  109 (362)
T KOG0294|consen   32 TLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI  109 (362)
T ss_pred             eeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence            456677899999999999985  67999999999999999999999999999999999999998765  89999999999


Q ss_pred             EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (389)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  213 (389)
                      .+|+...       +.....+++|.+.|+.++.+|.+ ++.++.+.|+.++.||+-+|+.....+      -....+.+.
T Consensus       110 ~iw~~~~-------W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~------L~~~at~v~  175 (362)
T KOG0294|consen  110 IIWRVGS-------WELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLN------LKNKATLVS  175 (362)
T ss_pred             EEEEcCC-------eEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeec------cCCcceeeE
Confidence            9999875       45889999999999999999998 789999999999999999998777663      223345599


Q ss_pred             eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC
Q 016458          214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG  293 (389)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  293 (389)
                      |+| .+.+++.+..+ .|-+|.+.+. .....+. ....+.++.|. ++..|++|+.|+.|.+||..+..+...+..+..
T Consensus       176 w~~-~Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~  250 (362)
T KOG0294|consen  176 WSP-QGDHFVVSGRN-KIDIYQLDNA-SVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN  250 (362)
T ss_pred             EcC-CCCEEEEEecc-EEEEEecccH-hHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh
Confidence            998 77777776654 6889988865 3333332 22446677775 677899999999999999998888877766554


Q ss_pred             CCCCCCeeEEEe--CCCCCEEEEEecCCcEEEEEcccc-----eEEEeecCcCCCCCCCeeEEEEC
Q 016458          294 ENEIPHVTSIAF--SISGRLLFAGYSNGDCYVWDTLLA-----KVVLNLGSLQNSHEGRITCLGLS  352 (389)
Q Consensus       294 ~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~v~~~~~~  352 (389)
                      .     |.++.+  .|++.+|+++++||.|+|||++..     +.+..+     .....++|+...
T Consensus       251 R-----VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~-----n~~~RltCl~~~  306 (362)
T KOG0294|consen  251 R-----VKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAEL-----NTNVRLTCLRVK  306 (362)
T ss_pred             h-----eeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEe-----ecCCccceeeeh
Confidence            3     888774  467889999999999999999765     344444     225567776654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-31  Score=224.49  Aligned_cols=258  Identities=16%  Similarity=0.294  Sum_probs=221.9

Q ss_pred             ccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEee-CCCcEEEEEECCCCcEEEEecC
Q 016458           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGL  129 (389)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~  129 (389)
                      .|+...........-+.+.|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.. |...|.+++|.  +..+.+|+.
T Consensus       201 lW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr  278 (484)
T KOG0305|consen  201 LWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSR  278 (484)
T ss_pred             EEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecC
Confidence            455555554444444588999999999999999999999999999999999999998 89999999997  788999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCe
Q 016458          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV  209 (389)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  209 (389)
                      ++.|..+|++....      ....+.+|...|..+.|++++ .++++|+.|+.+.|||.........+     ..|...|
T Consensus       279 ~~~I~~~dvR~~~~------~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~-----~~H~aAV  346 (484)
T KOG0305|consen  279 DGKILNHDVRISQH------VVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTF-----TEHTAAV  346 (484)
T ss_pred             CCcEEEEEEecchh------hhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEE-----eccceee
Confidence            99999999998552      222488999999999999998 79999999999999999888888888     7999999


Q ss_pred             eEEEeeCCCCcEEEEee--CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe--cCCeEEEEECCCCcee
Q 016458          210 LSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRTGHQL  285 (389)
Q Consensus       210 ~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~  285 (389)
                      .+++|+|....+||+|+  .|+.|++||..++ ..+.... ....|..+.|++..+-|+++.  .++.|.||+..+.+.+
T Consensus       347 KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~  424 (484)
T KOG0305|consen  347 KALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV  424 (484)
T ss_pred             eEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee
Confidence            99999999999999865  6999999999977 5555554 467899999999887777654  5678999999998888


Q ss_pred             eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (389)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (389)
                      ..+..+..     .|..++++|||..+++|+.|.++++|++-..
T Consensus       425 ~~l~gH~~-----RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  425 AELLGHTS-----RVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             eeecCCcc-----eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            87766554     4999999999999999999999999998654

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=1.2e-30  Score=224.60  Aligned_cols=325  Identities=17%  Similarity=0.254  Sum_probs=266.9

Q ss_pred             ccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc
Q 016458           43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ  122 (389)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~  122 (389)
                      .++.+....|.....+.+.+++++...|+++.=+|--..+|.|..+|+|.++|+..++.+.+++...+.|+.+.|..||.
T Consensus       178 Gs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~  257 (910)
T KOG1539|consen  178 GSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN  257 (910)
T ss_pred             eecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC
Confidence            35556667888899999999999999999999999888999999999999999999999999998889999999999987


Q ss_pred             E-EEEecCCCcEEEEeCCCCCC----------------------------------------CCCCCcceeeecccccce
Q 016458          123 S-VACGGLDSVCSIFNLNSPTD----------------------------------------KDGNLPVSRMLSGHKGYV  161 (389)
Q Consensus       123 ~-l~~~~~dg~i~vw~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~v  161 (389)
                      . +++|+..|.+.+||++..+.                                        .++.....+.-.+|..+.
T Consensus       258 p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp  337 (910)
T KOG1539|consen  258 PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPP  337 (910)
T ss_pred             eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCc
Confidence            5 56677779999999997541                                        011112334456788899


Q ss_pred             EEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-------e--------eE--------------------------------
Q 016458          162 SCCQYVPDEDTHLITSSGDQTCVLWDITTG-------L--------RT--------------------------------  194 (389)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~--------~~--------------------------------  194 (389)
                      .|+.|.......+.+++.|++++.+++...       +        ..                                
T Consensus       338 ~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~  417 (910)
T KOG1539|consen  338 SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITA  417 (910)
T ss_pred             hheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEE
Confidence            999998655578888988888877765321       0        00                                


Q ss_pred             -------------------EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE---eeeccc
Q 016458          195 -------------------SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---HGHEGD  252 (389)
Q Consensus       195 -------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~  252 (389)
                                         ..+...........+++++.++ .+++.+.|+..|.|-+|++.++ .....+   ..|.++
T Consensus       418 h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSG-i~r~sf~~~~ah~~~  495 (910)
T KOG1539|consen  418 HKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSG-IHRKSFGDSPAHKGE  495 (910)
T ss_pred             ecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccC-eeecccccCccccCc
Confidence                               0000000011335688899998 8999999999999999999987 555555   579999


Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE
Q 016458          253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  332 (389)
Q Consensus       253 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  332 (389)
                      |+.++...-++.+++++.+|.+.+||......+..+.....      +..+..+.....++++..|-.|+++|..+.+..
T Consensus       496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~------~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv  569 (910)
T KOG1539|consen  496 VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS------ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV  569 (910)
T ss_pred             eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC------cceeeeeehhhhhhhhcCceeEEEEEchhhhhh
Confidence            99999998889999999999999999998876666655443      788888888889999999999999999999999


Q ss_pred             EeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          333 LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       333 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      +.+    .+|.+.|++++|||||++|++++.|++|++    ||+.+|.+..
T Consensus       570 R~f----~gh~nritd~~FS~DgrWlisasmD~tIr~----wDlpt~~lID  612 (910)
T KOG1539|consen  570 REF----WGHGNRITDMTFSPDGRWLISASMDSTIRT----WDLPTGTLID  612 (910)
T ss_pred             HHh----hccccceeeeEeCCCCcEEEEeecCCcEEE----EeccCcceee
Confidence            999    899999999999999999999999999999    9999998864

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-30  Score=199.04  Aligned_cols=266  Identities=18%  Similarity=0.300  Sum_probs=215.7

Q ss_pred             eEEEEecCCcEEEEeCCCC------------CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC
Q 016458           81 RIVSASQDGRLIVWNALTS------------QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL  148 (389)
Q Consensus        81 ~l~~~~~dg~v~iw~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  148 (389)
                      .+++|+....|.=+++...            .++..+..|.+++++++.  ++.++++|+.|-+|+|||+....      
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~------   74 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK------   74 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh------
Confidence            3566776666655554321            235566789999999998  58999999999999999998755      


Q ss_pred             cceeeecccccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458          149 PVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (389)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (389)
                       ....+..|.+.|+++.|.+.. ...|++|+.||.|.+|+...-..+..+     ..|...|+.++++| .+++.++.+.
T Consensus        75 -qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~sl-----K~H~~~Vt~lsiHP-S~KLALsVg~  147 (362)
T KOG0294|consen   75 -QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSL-----KAHKGQVTDLSIHP-SGKLALSVGG  147 (362)
T ss_pred             -hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeee-----cccccccceeEecC-CCceEEEEcC
Confidence             456777899999999999864 137999999999999999999998888     78999999999999 8899999999


Q ss_pred             CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC
Q 016458          228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  307 (389)
Q Consensus       228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (389)
                      |+.+++||+-.+. .-..+.- ....+.+.|+|.|.+++.++.+ .|-+|.+.+......+....      .+.++.|- 
T Consensus       148 D~~lr~WNLV~Gr-~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~------r~l~~~~l-  217 (362)
T KOG0294|consen  148 DQVLRTWNLVRGR-VAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPK------RILCATFL-  217 (362)
T ss_pred             CceeeeehhhcCc-cceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccc------cceeeeec-
Confidence            9999999998773 3222221 2223449999999999988876 68999998876666554432      25666664 


Q ss_pred             CCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEE--CCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          308 SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL--SADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       308 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      ++.+|++|..|+.|.+||..+..+...+    .+|..+|.++.+  .|++.+|+|+++||.|+|    ||++..
T Consensus       218 ~~~~L~vG~d~~~i~~~D~ds~~~~~~~----~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~v----Wd~~~~  283 (362)
T KOG0294|consen  218 DGSELLVGGDNEWISLKDTDSDTPLTEF----LAHENRVKDIASYTNPEHEYLVTASSDGFIKV----WDIDME  283 (362)
T ss_pred             CCceEEEecCCceEEEeccCCCccceee----ecchhheeeeEEEecCCceEEEEeccCceEEE----EEcccc
Confidence            6779999999999999999998888888    899999999984  467899999999999999    999876

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.1e-32  Score=213.91  Aligned_cols=269  Identities=20%  Similarity=0.302  Sum_probs=227.7

Q ss_pred             ccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCC
Q 016458           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT  120 (389)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~  120 (389)
                      .+++.++....|+..+..+.++|++|.+.|..|++..  ..+++++.|.+|+.|.+.- .+.+++.+. ..+..+.-+..
T Consensus        83 aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~-s~~~gIdh~~~  158 (433)
T KOG0268|consen   83 ASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGK-SVYLGIDHHRK  158 (433)
T ss_pred             hccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecc-ccccccccccc
Confidence            3456677788999999999999999999999999987  5889999999999999765 355555544 44777777777


Q ss_pred             CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc
Q 016458          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE  200 (389)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  200 (389)
                      +..++++|.+  |.|||.....       +...+.--...|.++.|+|....+|++++.|+.|.+||++++.++...   
T Consensus       159 ~~~FaTcGe~--i~IWD~~R~~-------Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KV---  226 (433)
T KOG0268|consen  159 NSVFATCGEQ--IDIWDEQRDN-------PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKV---  226 (433)
T ss_pred             cccccccCce--eeecccccCC-------ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcccee---
Confidence            8889998764  9999987643       455666666789999999998888999999999999999999888776   


Q ss_pred             ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR  280 (389)
Q Consensus       201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  280 (389)
                         .....-+.++|+| +...|++|++|..++.||++....++....+|.+.|.+++|+|.|+-+++|+.|.+|+||..+
T Consensus       227 ---i~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~  302 (433)
T KOG0268|consen  227 ---ILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN  302 (433)
T ss_pred             ---eeeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecC
Confidence               3455678899999 888999999999999999999989999999999999999999999999999999999999999


Q ss_pred             CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEE
Q 016458          281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL  333 (389)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  333 (389)
                      .+.....+.....    ..|.++.||.|.+|+++|+.|+.|++|.....+.+.
T Consensus       303 ~~~SRdiYhtkRM----q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  303 HGHSRDIYHTKRM----QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             CCcchhhhhHhhh----heeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence            8876655533222    249999999999999999999999999876554443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-30  Score=209.25  Aligned_cols=286  Identities=17%  Similarity=0.281  Sum_probs=232.8

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCC--CCCeeEEEeeCCCcEEEEEECCCCc-EEEEecCCCcEEEEeCCCCCC
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNAL--TSQKTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTD  143 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~  143 (389)
                      .++|++|.|+|....|++|+.||+++||.+.  ....++.+.....+|.+++|.|+|. .+++++.....+.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            3579999999999999999999999999764  3456777888889999999999998 889999999999999987542


Q ss_pred             CCCCCcceeeecccc-cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458          144 KDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (389)
Q Consensus       144 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  222 (389)
                           .......++. ..+.....++++ ++++..+..|.|.+....+++.+..+      ...+.|..++|+. ++..|
T Consensus       293 -----~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~------KieG~v~~~~fsS-dsk~l  359 (514)
T KOG2055|consen  293 -----TKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSF------KIEGVVSDFTFSS-DSKEL  359 (514)
T ss_pred             -----ccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhhee------eeccEEeeEEEec-CCcEE
Confidence                 1223333333 356667788987 79999999999999999999988887      4667899999997 77888


Q ss_pred             EEeeCCCceEEEeCCCCCcceeEEeeeccce--EEEEEecCCCEEEEEecCCeEEEEECCC------CceeeEeeccCCC
Q 016458          223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDV--NTVKFFPDGNRFGTGSDDGTCRLFDIRT------GHQLQVYYQQHGE  294 (389)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~  294 (389)
                      ++++.+|.|.+||++.. .++..+.. .+.|  ++++.++++.+||+|+..|.|.|||..+      .+++..+.     
T Consensus       360 ~~~~~~GeV~v~nl~~~-~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d-----  432 (514)
T KOG2055|consen  360 LASGGTGEVYVWNLRQN-SCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD-----  432 (514)
T ss_pred             EEEcCCceEEEEecCCc-ceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh-----
Confidence            88888999999999988 77777764 3333  5677788999999999999999999654      22333322     


Q ss_pred             CCCCCeeEEEeCCCCCEEEEEec--CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeec
Q 016458          295 NEIPHVTSIAFSISGRLLFAGYS--NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLG  372 (389)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~  372 (389)
                      +-...|+++.|++|++.||.++.  +..+++-.+.+......++.. ...-+.|+||+|+|.|.+||.|..+|.+.+   
T Consensus       433 NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~-n~~vg~vtc~aFSP~sG~lAvGNe~grv~l---  508 (514)
T KOG2055|consen  433 NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS-NTKVGHVTCMAFSPNSGYLAVGNEAGRVHL---  508 (514)
T ss_pred             hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC-CCcccceEEEEecCCCceEEeecCCCceee---
Confidence            22335999999999999988765  568999999888888777543 344568999999999999999999999999   


Q ss_pred             ceecc
Q 016458          373 FWRVQ  377 (389)
Q Consensus       373 ~W~~~  377 (389)
                       |.+.
T Consensus       509 -~kL~  512 (514)
T KOG2055|consen  509 -FKLH  512 (514)
T ss_pred             -Eeec
Confidence             9875

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.2e-30  Score=221.33  Aligned_cols=298  Identities=19%  Similarity=0.296  Sum_probs=237.7

Q ss_pred             eeeecccccCcEEEEEEcCC-----------CCeEEEEecCCcEEEEeCCCCCeeEEE----------------------
Q 016458           59 CCRTLQGHAGKVYSLDWTSE-----------RNRIVSASQDGRLIVWNALTSQKTHAI----------------------  105 (389)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~-----------~~~l~~~~~dg~v~iw~~~~~~~~~~~----------------------  105 (389)
                      .+..+.-|...|+.+.--|-           ...+.|++.|++|++||+..+..-..+                      
T Consensus       361 k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~  440 (1080)
T KOG1408|consen  361 KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM  440 (1080)
T ss_pred             ceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh
Confidence            34445557777777766551           135899999999999998653211110                      


Q ss_pred             ---------------eeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC-
Q 016458          106 ---------------KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-  169 (389)
Q Consensus       106 ---------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  169 (389)
                                     -...-.+.+++.+|+|++||+|..-|.++||++....       ....+..|...|.|+.|+.. 
T Consensus       441 ~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-------~~~~~eAHesEilcLeyS~p~  513 (1080)
T KOG1408|consen  441 HDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE-------YTCFMEAHESEILCLEYSFPV  513 (1080)
T ss_pred             hhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh-------hhhheecccceeEEEeecCch
Confidence                           0112358999999999999999999999999998633       56778899999999999863 


Q ss_pred             -CCcEEEEeeCCCeEEEEeCCCCe-eEEEecCcccCCCCCCeeEEEeeCCC-CcEEEEeeCCCceEEEeCCCCCcceeEE
Q 016458          170 -EDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTF  246 (389)
Q Consensus       170 -~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~  246 (389)
                       +.++|++++.|..|.+||..... .+..+     .+|...|+++.|.-.+ +..+++++.|..|.+--.+.. .....+
T Consensus       514 ~~~kLLASasrdRlIHV~Dv~rny~l~qtl-----d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~-~~g~~f  587 (1080)
T KOG1408|consen  514 LTNKLLASASRDRLIHVYDVKRNYDLVQTL-----DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKA-SSGRLF  587 (1080)
T ss_pred             hhhHhhhhccCCceEEEEecccccchhhhh-----cccccceeEEEEeecCCceEEEeccCchhhheehhccc-cCceec
Confidence             33689999999999999987653 34444     7899999999998633 256788888887765433322 222222


Q ss_pred             eee-----ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcE
Q 016458          247 HGH-----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC  321 (389)
Q Consensus       247 ~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  321 (389)
                      ..|     ...+..++..|..+++++++.|..|+|||+.+++....|...+..  .+....+...|.|.||++.+.|.++
T Consensus       588 ~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~--eG~lIKv~lDPSgiY~atScsdktl  665 (1080)
T KOG1408|consen  588 PRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH--EGDLIKVILDPSGIYLATSCSDKTL  665 (1080)
T ss_pred             cccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccC--CCceEEEEECCCccEEEEeecCCce
Confidence            222     346889999999999999999999999999999999999876543  3457889999999999999999999


Q ss_pred             EEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          322 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       322 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      .++|+.+++.+...    .+|...|+.+.|.+|.+.|++.+.||.|.|    |.+...
T Consensus       666 ~~~Df~sgEcvA~m----~GHsE~VTG~kF~nDCkHlISvsgDgCIFv----W~lp~~  715 (1080)
T KOG1408|consen  666 CFVDFVSGECVAQM----TGHSEAVTGVKFLNDCKHLISVSGDGCIFV----WKLPLT  715 (1080)
T ss_pred             EEEEeccchhhhhh----cCcchheeeeeecccchhheeecCCceEEE----EECchh
Confidence            99999999999999    899999999999999999999999999999    998753

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=5.1e-31  Score=212.09  Aligned_cols=264  Identities=22%  Similarity=0.313  Sum_probs=208.1

Q ss_pred             eCCCcEEEEEECCCC-cEEEEecCCCcEEEEeCCCCCCCCC---CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe
Q 016458          107 LPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDG---NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT  182 (389)
Q Consensus       107 ~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  182 (389)
                      .|.+.|+.+.+.|+. ..+++.+..+.|.|||.........   .......+.+|...-.+++|++.....+++++.|+.
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            477889999999955 5667778899999999987442221   334556788999988999999988889999999999


Q ss_pred             EEEEeCCCCeeE--EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC-CCcceeEEeeeccceEEEEEe
Q 016458          183 CVLWDITTGLRT--SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-ASRAVRTFHGHEGDVNTVKFF  259 (389)
Q Consensus       183 i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~i~~~~~~  259 (389)
                      |++||+......  ...+.....+|...|..++|++.+..+|++++.|+.+.|||+|+ ..++.....+|.++|.|++|+
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn  281 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN  281 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence            999999865431  11111122789999999999999999999999999999999996 336777888999999999999


Q ss_pred             c-CCCEEEEEecCCeEEEEECCCCce-eeEeeccCCCCCCCCeeEEEeCCCC-CEEEEEecCCcEEEEEcccceEEE---
Q 016458          260 P-DGNRFGTGSDDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVL---  333 (389)
Q Consensus       260 ~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~---  333 (389)
                      | ++..||+|+.|++|.+||+|+... +..+     ..+...|.++.|+|.. ..||+++.|+.+.|||+..-....   
T Consensus       282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~-----e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e  356 (422)
T KOG0264|consen  282 PFNEFILATGSADKTVALWDLRNLNKPLHTF-----EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE  356 (422)
T ss_pred             CCCCceEEeccCCCcEEEeechhcccCceec-----cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence            9 677889999999999999998654 2333     3344469999999975 488889999999999986421111   


Q ss_pred             -------eecCcCCCCCCCeeEEEECCCC-CeEEeeeCCCeeEEeecceecccC
Q 016458          334 -------NLGSLQNSHEGRITCLGLSADG-SALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       334 -------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                             .+.....+|...|..+.|+|+. ..+++++.|+.+.|    |++...
T Consensus       357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqI----W~~s~~  406 (422)
T KOG0264|consen  357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQI----WQMAEN  406 (422)
T ss_pred             hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEE----eecccc
Confidence                   1111127899999999999965 46788999999999    998743

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=100.00  E-value=4.1e-30  Score=195.94  Aligned_cols=290  Identities=22%  Similarity=0.328  Sum_probs=225.6

Q ss_pred             ccccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCe----------eE-----EEeeCCCcEEEEEECC-CCcEEEE
Q 016458           64 QGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQK----------TH-----AIKLPCAWVMTCAFSP-TGQSVAC  126 (389)
Q Consensus        64 ~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~----------~~-----~~~~~~~~v~~~~~~~-~~~~l~~  126 (389)
                      +-|.+.|+++...+ .|+++++|+.||.|.+||++....          ..     .-..|.-.|..+.|-| |..++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            35889999999998 788999999999999999976431          11     1124566799999999 6778889


Q ss_pred             ecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCC--CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC
Q 016458          127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG  204 (389)
Q Consensus       127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  204 (389)
                      ++.|.+++|||.++.+       ....+ ...+.|..-+++|-.  ..++++|..+-.|++.|+.+|.....+     .+
T Consensus       120 sSFDhtlKVWDtnTlQ-------~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L-----sG  186 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQ-------EAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL-----SG  186 (397)
T ss_pred             ccccceEEEeecccce-------eeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee-----cc
Confidence            9999999999998844       22222 234566666777642  246788888999999999999999999     89


Q ss_pred             CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE--------------eeeccceEEEEEecCCCEEEEEec
Q 016458          205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--------------HGHEGDVNTVKFFPDGNRFGTGSD  270 (389)
Q Consensus       205 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------~~~~~~i~~~~~~~~~~~l~~~~~  270 (389)
                      |...|.++.|+|...-.|++|+.||.|++||++....++..+              .+|.+.+..++|..++.++++++.
T Consensus       187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT  266 (397)
T ss_pred             ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence            999999999999888899999999999999998653333333              456778999999999999999999


Q ss_pred             CCeEEEEECCCCceeeEeeccCCCCCC--CCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeE
Q 016458          271 DGTCRLFDIRTGHQLQVYYQQHGENEI--PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  348 (389)
Q Consensus       271 dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  348 (389)
                      |..+++|+...|+....-......+..  ..+. +. +.+...++.--.++.+.++++-.+..+..+    ..|...|.|
T Consensus       267 d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l----~~h~k~i~c  340 (397)
T KOG4283|consen  267 DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL----STHLKRINC  340 (397)
T ss_pred             ccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEee----ecccceeeE
Confidence            999999999887654332221111110  0111 22 333334444445689999999999999999    789889999


Q ss_pred             EEECCCCCeEEeeeCCCeeEEeecceec
Q 016458          349 LGLSADGSALCTGSWDTNLKVNLGFWRV  376 (389)
Q Consensus       349 ~~~~~~~~~l~~~~~dg~i~i~~~~W~~  376 (389)
                      .++-|+-+...+|..|+.+..    |-.
T Consensus       341 ~~~~~~fq~~~tg~~d~ni~~----w~p  364 (397)
T KOG4283|consen  341 AAYRPDFEQCFTGDMNGNIYM----WSP  364 (397)
T ss_pred             EeecCchhhhhccccCCcccc----ccc
Confidence            999999999999999999999    876

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=100.00  E-value=5.3e-31  Score=214.70  Aligned_cols=282  Identities=19%  Similarity=0.369  Sum_probs=233.9

Q ss_pred             cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC---eeEEEe--eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN  139 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~---~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~  139 (389)
                      .|..-|.++..|...++++||+. |.|+|||+....   ++..+.  .....+.++...|||+.|++|+.-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            58889999999999999999986 689999986432   233332  234679999999999999999999999999999


Q ss_pred             CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (389)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (389)
                      .+...     +...+....-.+..++.+||. ++.+++..||.|.|||+.+...+..+     .+|.+.+.||.+++ ++
T Consensus       496 apTpr-----ikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~Vrqf-----qGhtDGascIdis~-dG  563 (705)
T KOG0639|consen  496 APTPR-----IKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQF-----QGHTDGASCIDISK-DG  563 (705)
T ss_pred             CCCcc-----hhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecc-----cCCCCCceeEEecC-CC
Confidence            85421     223333444567889999997 78999999999999999999999999     89999999999998 88


Q ss_pred             cEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458          220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (389)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (389)
                      ..|-+|+-|.+|+.||++.. ..+.... ....|.++.++|++.++++|-.++.+.+-....... ..+..     +...
T Consensus       564 tklWTGGlDntvRcWDlreg-rqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlhl-----heSc  635 (705)
T KOG0639|consen  564 TKLWTGGLDNTVRCWDLREG-RQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLHL-----HESC  635 (705)
T ss_pred             ceeecCCCccceeehhhhhh-hhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccc-eeecc-----cccE
Confidence            89999999999999999987 3333322 456799999999999999999999998888664333 22322     2335


Q ss_pred             eeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceec
Q 016458          300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRV  376 (389)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~  376 (389)
                      |.++.|.+.|+++++.+.|+.+..|...-|..+...     ...++|.+..++.|.++++||+.|....|    |.+
T Consensus       636 VLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs-----kE~SsVlsCDIS~ddkyIVTGSGdkkATV----YeV  703 (705)
T KOG0639|consen  636 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----KESSSVLSCDISFDDKYIVTGSGDKKATV----YEV  703 (705)
T ss_pred             EEEEEecccCceeeecCchhhhhhccCccccceeec-----cccCcceeeeeccCceEEEecCCCcceEE----EEE
Confidence            999999999999999999999999999988888776     46778999999999999999999998888    654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.98  E-value=5.8e-31  Score=214.97  Aligned_cols=259  Identities=20%  Similarity=0.233  Sum_probs=197.8

Q ss_pred             CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC
Q 016458          100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG  179 (389)
Q Consensus       100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  179 (389)
                      .....+++|...|.++++.|.|..|++|+.|..|++||+...........  .........|.++.|++.+ ..|++.+.
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr--~l~P~E~h~i~sl~ys~Tg-~~iLvvsg  234 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFR--QLQPCETHQINSLQYSVTG-DQILVVSG  234 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhh--ccCcccccccceeeecCCC-CeEEEEec
Confidence            34455677888899999999999999999999999999987543222211  2223345579999999998 46777777


Q ss_pred             CCeEEEEeCCCCeeEEEecC-------cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee----
Q 016458          180 DQTCVLWDITTGLRTSVFGG-------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG----  248 (389)
Q Consensus       180 dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----  248 (389)
                      ....+++|-...........       ...++|...+++.+|+|.+...|++++.||++++||+.........+..    
T Consensus       235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~  314 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG  314 (641)
T ss_pred             CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence            78899999765544443322       2346899999999999999999999999999999999987665555542    


Q ss_pred             -eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          249 -HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       249 -~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                       ..-+++.++|+|++++||+|+.||.|.+|+.........+.....+.....|+++.||+||++|++-+.|+.+++||++
T Consensus       315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence             2347899999999999999999999999998665443333333333333469999999999999999999999999998


Q ss_pred             cce-EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458          328 LAK-VVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  363 (389)
Q Consensus       328 ~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  363 (389)
                      ..+ ++.....+  ....+-+.++|||+.++|++|..
T Consensus       395 q~kkpL~~~tgL--~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  395 QFKKPLNVRTGL--PTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             ccccchhhhcCC--CccCCCCccccCCCceEEEeccc
Confidence            754 34333221  22235678999999999999864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.98  E-value=1.6e-30  Score=230.32  Aligned_cols=258  Identities=19%  Similarity=0.266  Sum_probs=216.0

Q ss_pred             ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC------------------CCeeEEEeeCCCcEEEEEEC
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT------------------SQKTHAIKLPCAWVMTCAFS  118 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~------------------~~~~~~~~~~~~~v~~~~~~  118 (389)
                      .+.+.+...|.+.|+|+.|+|||++||+|+.|+.|.||....                  .+....+.+|...|..++|+
T Consensus        59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence            345567788999999999999999999999999999998762                  13567788999999999999


Q ss_pred             CCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec
Q 016458          119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (389)
Q Consensus       119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  198 (389)
                      |++.+|++++.|++|.+|+..+.       .....+.+|.+.|..+.|.|-| ++|++-+.|++|++|++.+-.....+.
T Consensus       139 p~~~~lvS~s~DnsViiwn~~tF-------~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It  210 (942)
T KOG0973|consen  139 PDDSLLVSVSLDNSVIIWNAKTF-------ELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSIT  210 (942)
T ss_pred             CCccEEEEecccceEEEEccccc-------eeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeec
Confidence            99999999999999999999874       3788999999999999999998 899999999999999987766666664


Q ss_pred             Cccc-CCCCCCeeEEEeeCCCCcEEEEeeC----CCceEEEeCCCCCcceeEEeeeccceEEEEEecC-----CC-----
Q 016458          199 GEFQ-SGHTADVLSVSISGSNSRMFVSGSC----DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-----GN-----  263 (389)
Q Consensus       199 ~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~-----  263 (389)
                      ..+. ......+..+.|+| ++++|++...    -..+.|.+-.+. +.-..+-+|.+++.++.|+|.     .+     
T Consensus       211 ~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~  288 (942)
T KOG0973|consen  211 KPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST  288 (942)
T ss_pred             cchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence            4332 33445688999999 8889887543    346778876544 666788899999999999981     12     


Q ss_pred             -------EEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458          264 -------RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (389)
Q Consensus       264 -------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (389)
                             .+|+|+.|++|.||.....+++.........    .|.+++|+|||..|++++.||+|.++.++.
T Consensus       289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~----SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK----SIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC----ceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence                   6789999999999999887777666443332    599999999999999999999999998764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.98  E-value=4.8e-30  Score=205.29  Aligned_cols=256  Identities=20%  Similarity=0.304  Sum_probs=215.2

Q ss_pred             ccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC
Q 016458           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD  130 (389)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  130 (389)
                      .++-+.-+.+..|+||...|+.+.|+|+...+++++.|..|+||.............|.++|+.+..+|.|.||++++.|
T Consensus       245 ~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d  324 (506)
T KOG0289|consen  245 LFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASND  324 (506)
T ss_pred             EEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCC
Confidence            44555567778999999999999999999999999999999999998888888889999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeec--ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCC
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLS--GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD  208 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  208 (389)
                      |.....|++++.       ......  ...-.+++.+|+||| .+|.+|..||.|+|||+.++.....|     .+|.++
T Consensus       325 ~~w~Fsd~~~g~-------~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~F-----pght~~  391 (506)
T KOG0289|consen  325 GTWAFSDISSGS-------QLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKF-----PGHTGP  391 (506)
T ss_pred             ceEEEEEccCCc-------EEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccC-----CCCCCc
Confidence            999999998854       222221  223458999999998 78999999999999999999999988     789999


Q ss_pred             eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee-ccceEEEEEecCCCEEEEEecCCeEEEEECCC--Ccee
Q 016458          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT--GHQL  285 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~  285 (389)
                      |..++|+. ++.+|++++.|+.|++||+|.. +.+.++... ...+.++.|.+.|.+|+.++.|=.|++++-.+  ...+
T Consensus       392 vk~i~FsE-NGY~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~  469 (506)
T KOG0289|consen  392 VKAISFSE-NGYWLATAADDGSVKLWDLRKL-KNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEI  469 (506)
T ss_pred             eeEEEecc-CceEEEEEecCCeEEEEEehhh-cccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceee
Confidence            99999997 9999999999999999999987 555555433 33699999999999999998887777776433  3344


Q ss_pred             eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (389)
                      ..+..+.     +..+.+.|....+++++++.|..++++.+
T Consensus       470 ~~~~~~s-----g~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  470 KELADHS-----GLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ehhhhcc-----cccceeeecccceEEeeccchhheEEeec
Confidence            4443333     34788999999999999999998888754

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=5.3e-29  Score=183.05  Aligned_cols=259  Identities=20%  Similarity=0.312  Sum_probs=202.6

Q ss_pred             ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC-----eeEEEeeCCCcEEEEEECC----CCcEEEEe
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-----KTHAIKLPCAWVMTCAFSP----TGQSVACG  127 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-----~~~~~~~~~~~v~~~~~~~----~~~~l~~~  127 (389)
                      ...++.-+.|++.|.|.+|+|+|.++++|+.|.+|++..+....     ....+..|.+.|..++|..    .+..|+++
T Consensus        79 ~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~  158 (350)
T KOG0641|consen   79 SVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA  158 (350)
T ss_pred             eEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence            34556678899999999999999999999999999997654322     2345778899999999954    34566665


Q ss_pred             cC-CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC--
Q 016458          128 GL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG--  204 (389)
Q Consensus       128 ~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--  204 (389)
                      +. |-.|++-|...++       ....+.+|.+-|.++- +-++ .++++|+.|.+|++||++-..++..+...+..+  
T Consensus       159 gagdc~iy~tdc~~g~-------~~~a~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gl  229 (350)
T KOG0641|consen  159 GAGDCKIYITDCGRGQ-------GFHALSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGL  229 (350)
T ss_pred             CCCcceEEEeecCCCC-------cceeecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccceeeeccCcccCCCc
Confidence            43 4455555555544       5677889999998763 3333 789999999999999999998888875433221  


Q ss_pred             CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458          205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ  284 (389)
Q Consensus       205 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  284 (389)
                      ..+.|.++++.| .+++|++|-.|....+||++.+ +.++.+.+|...|.++.|+|...++++++.|..|++-|+... .
T Consensus       230 essavaav~vdp-sgrll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-l  306 (350)
T KOG0641|consen  230 ESSAVAAVAVDP-SGRLLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-L  306 (350)
T ss_pred             ccceeEEEEECC-CcceeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc-h
Confidence            236789999999 8999999999999999999987 899999999999999999999999999999999999998642 2


Q ss_pred             eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      ...+..--...+...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus       307 a~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  307 AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             hhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            2111111112223347888999999889999999999999763

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=6.8e-31  Score=194.83  Aligned_cols=257  Identities=19%  Similarity=0.248  Sum_probs=204.7

Q ss_pred             cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC---CeeEEEeeCCCcEEEEEECC--CCcEEEEecCCCcEEEEe
Q 016458           63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS---QKTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVCSIFN  137 (389)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw~  137 (389)
                      -..|.+.|..+...-.|++|||++.|++|+||...+.   ..+..+.+|.++|..++|..  .|.+||+++.||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            4579999999999999999999999999999998765   45788899999999999965  899999999999999999


Q ss_pred             CCCCCCCCCCCcceeeecccccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (389)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  216 (389)
                      -.++     .+........|...|++++|.|.+ .-.|++++.||.|.+.+.+....-..  ......|.-.|++++|.|
T Consensus        87 e~~g-----~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t--~ki~~aH~~GvnsVswap  159 (299)
T KOG1332|consen   87 EENG-----RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT--SKIVFAHEIGVNSVSWAP  159 (299)
T ss_pred             cCCC-----chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc--hhhhhccccccceeeecC
Confidence            8874     344566677899999999999974 24688999999999999876511111  112267999999999998


Q ss_pred             CC--C-----------cEEEEeeCCCceEEEeCCCCC-cceeEEeeeccceEEEEEecCC----CEEEEEecCCeEEEEE
Q 016458          217 SN--S-----------RMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDG----NRFGTGSDDGTCRLFD  278 (389)
Q Consensus       217 ~~--~-----------~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~d  278 (389)
                      ..  +           +.|++|+.|..|+||+..+.. ..-..+.+|...|+.++|.|.-    .+|+++++||++.||.
T Consensus       160 a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt  239 (299)
T KOG1332|consen  160 ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT  239 (299)
T ss_pred             cCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence            41  1           469999999999999998752 2334588999999999999943    5799999999999998


Q ss_pred             CCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (389)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (389)
                      .+...........  ......+..+.||+.|+.|++++.|+.|.+|.-..
T Consensus       240 ~~~e~e~wk~tll--~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  240 KDEEYEPWKKTLL--EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             ecCccCccccccc--ccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            7643222111111  11222489999999999999999999999997543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.98  E-value=1.1e-30  Score=200.42  Aligned_cols=265  Identities=22%  Similarity=0.324  Sum_probs=209.0

Q ss_pred             eEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCC-----------CCCCCCCcceeeecccccceEEEEEeeCC
Q 016458          102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP-----------TDKDGNLPVSRMLSGHKGYVSCCQYVPDE  170 (389)
Q Consensus       102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  170 (389)
                      ...+..|.+++.+.+|++||.++++|+.|..|+|.|++..           .......++++++..|..+|+++.|+|..
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            3456778999999999999999999999999999998831           12233457889999999999999999986


Q ss_pred             CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE---e
Q 016458          171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---H  247 (389)
Q Consensus       171 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~  247 (389)
                       .+|++|+.|++|++||+........++.   .....+|.++.|+| .+.++++|+.-..+++||+++. ++...-   .
T Consensus       185 -~ILiS~srD~tvKlFDfsK~saKrA~K~---~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~-QcfvsanPd~  258 (430)
T KOG0640|consen  185 -TILISGSRDNTVKLFDFSKTSAKRAFKV---FQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTY-QCFVSANPDD  258 (430)
T ss_pred             -heEEeccCCCeEEEEecccHHHHHHHHH---hhccceeeeEeecC-CCceEEEecCCCceeEEeccce-eEeeecCccc
Confidence             8999999999999999987544333311   23456899999999 8999999999999999999987 444332   3


Q ss_pred             eeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          248 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       248 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      .|.+.|+++.+++.+++.++++.||.|++||--+++++..+...++.   ..|++..|..+|+|+++.+.|..+++|.+.
T Consensus       259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g---sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG---SEVCSAVFTKNGKYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             ccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC---ceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence            58889999999999999999999999999999999999888775543   359999999999999999999999999999


Q ss_pred             cceEEEeecCcC-CCCCCCeeEEEECCCCCeEEeeeC-CCeeEEeecceecccC
Q 016458          328 LAKVVLNLGSLQ-NSHEGRITCLGLSADGSALCTGSW-DTNLKVNLGFWRVQEG  379 (389)
Q Consensus       328 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~W~~~~~  379 (389)
                      +++.+......- .+....-+...|.....|++.-.. .+.+.-    ||-.++
T Consensus       336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcs----WdaRta  385 (430)
T KOG0640|consen  336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCS----WDARTA  385 (430)
T ss_pred             CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceee----ccccch
Confidence            999998875310 011112233445555555554332 344555    666655

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=2.4e-29  Score=218.93  Aligned_cols=278  Identities=15%  Similarity=0.270  Sum_probs=227.8

Q ss_pred             ccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC-CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCC
Q 016458           64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS-QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT  142 (389)
Q Consensus        64 ~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  142 (389)
                      .+|+..-+.|+|.|+|++|++++.||.|++|+.... +....+..+...|.+++-  .+.+|++|+.+++|.+|.+..+.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence            379999999999999999999999999999987665 444555546677877776  45599999999999999998865


Q ss_pred             CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (389)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  222 (389)
                             ....+....-++.+++|+.+| .+++.|+.|-.|++.+..+......+     .+|..+|.++.++| ++++|
T Consensus        88 -------~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~l-----rgh~apVl~l~~~p-~~~fL  153 (933)
T KOG1274|consen   88 -------EDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVL-----RGHDAPVLQLSYDP-KGNFL  153 (933)
T ss_pred             -------ccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheee-----cccCCceeeeeEcC-CCCEE
Confidence                   233445556789999999998 78999999999999999999888888     79999999999999 99999


Q ss_pred             EEeeCCCceEEEeCCCCCcceeEEee-------e-ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCC
Q 016458          223 VSGSCDSTARLWDTRVASRAVRTFHG-------H-EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE  294 (389)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~~~~~~~~~-------~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  294 (389)
                      ++.+.||.|++||+.++ .....+.+       . ...+..++|+|++..++..+.|+.|++|+...+.....+......
T Consensus       154 Avss~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~s  232 (933)
T KOG1274|consen  154 AVSSCDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSS  232 (933)
T ss_pred             EEEecCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccc
Confidence            99999999999999876 44333322       1 345678999999888999999999999999998888777664332


Q ss_pred             CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                         ..++.+.|+|+|+|||+++.||.|.|||.++...        ......|++++|.|++..+-.-...|...+
T Consensus       233 ---s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~--------~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~  296 (933)
T KOG1274|consen  233 ---SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER--------HEFKRAVCCEAWKPNANAITLITALGTLGV  296 (933)
T ss_pred             ---cceEEEEEcCCCcEEeeeccCCcEEEEecccchh--------ccccceeEEEecCCCCCeeEEEeecccccc
Confidence               2389999999999999999999999999987222        233468999999998876655544554444

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.98  E-value=6.1e-31  Score=209.03  Aligned_cols=256  Identities=23%  Similarity=0.335  Sum_probs=213.3

Q ss_pred             CCCcccCCCcce--eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458           47 RAPVSFGPTDLV--CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV  124 (389)
Q Consensus        47 ~~~~~~~~~~~~--~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  124 (389)
                      ..+..|....-+  ...+|.|-.++|++++|.+++..+++++.|+.+++|++...+...++.+|.+.|+++.|......+
T Consensus       197 r~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~v  276 (459)
T KOG0288|consen  197 RIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRV  276 (459)
T ss_pred             hhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccce
Confidence            334455544433  677888999999999999999999999999999999999999999999999999999999887779


Q ss_pred             EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC
Q 016458          125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG  204 (389)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  204 (389)
                      ++|+.|.+|++||+....       +..+.. ....+.+|...+   ..+++|..|+.|++||+++.......      .
T Consensus       277 Vsgs~DRtiK~WDl~k~~-------C~kt~l-~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv------~  339 (459)
T KOG0288|consen  277 VSGSADRTIKLWDLQKAY-------CSKTVL-PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTRSV------P  339 (459)
T ss_pred             eeccccchhhhhhhhhhh-------eecccc-ccccccceEecc---eeeeecccccceEEEeccCCceeeEe------e
Confidence            999999999999998733       222222 234455666653   56899999999999999999988887      3


Q ss_pred             CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee----ccceEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458          205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR  280 (389)
Q Consensus       205 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  280 (389)
                      ..+.|+++..++ ++..+++++.|.++.+.|+++. .....+.+.    ....+.+.|||++.|+++|+.||.|+||++.
T Consensus       340 ~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~  417 (459)
T KOG0288|consen  340 LGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVF  417 (459)
T ss_pred             cCcceeeEeecc-CCeEEeeecCCCceeeeecccc-cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEcc
Confidence            345899999998 7888888899999999999987 555555432    2347899999999999999999999999999


Q ss_pred             CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEE
Q 016458          281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW  324 (389)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  324 (389)
                      +++...........   ..|++++|+|.|.++++++.++.+.+|
T Consensus       418 tgKlE~~l~~s~s~---~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  418 TGKLEKVLSLSTSN---AAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             CceEEEEeccCCCC---cceEEEEEcCCCchhhcccCCcceEec
Confidence            99988877654432   259999999999999999999999998

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.97  E-value=5.5e-28  Score=203.97  Aligned_cols=276  Identities=17%  Similarity=0.167  Sum_probs=205.2

Q ss_pred             CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE-EEecCCCcEEEEeCCCCCCCCCCCcceeeecccc
Q 016458           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK  158 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  158 (389)
                      +.+++++.|+.|++||..+++.+..+..+.. +..++|+|+++.+ ++++.++.|++||..++.       ....+..+.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-------~~~~~~~~~   73 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGE-------VIGTLPSGP   73 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCc-------EEEeccCCC
Confidence            5788999999999999999998888876544 6789999999876 566788999999998744       233333333


Q ss_pred             cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC-ceEEEeCC
Q 016458          159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-TARLWDTR  237 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~  237 (389)
                       .+..+.|+|++..++++++.++.|++||+.+...+..+.      ....+.+++++| ++.+++++..++ .+.+||.+
T Consensus        74 -~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~------~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~  145 (300)
T TIGR03866        74 -DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP------VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTK  145 (300)
T ss_pred             -CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee------CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCC
Confidence             346788999985455566678999999999887776652      233467899999 778888877765 56778987


Q ss_pred             CCCcceeEEeeeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCceeeEeeccCCC--CCCCCeeEEEeCCCCCEEEE
Q 016458          238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGE--NEIPHVTSIAFSISGRLLFA  314 (389)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~  314 (389)
                      +. ....... ....+.+++|+|++++|+++ ..++.|++||+.+++....+......  ........++|+|+++++++
T Consensus       146 ~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~  223 (300)
T TIGR03866       146 TY-EIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV  223 (300)
T ss_pred             CC-eEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEE
Confidence            65 4433332 23456789999999988655 46899999999998776655422111  01112456889999998655


Q ss_pred             E-ecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee-eCCCeeEEeecceecccCccc
Q 016458          315 G-YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG-SWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       315 ~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      + ..++.+.+||+.+++....+     .+...+.+++|+|+|++|+++ +.+|.|++    ||+.+++..
T Consensus       224 ~~~~~~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v----~d~~~~~~~  284 (300)
T TIGR03866       224 ALGPANRVAVVDAKTYEVLDYL-----LVGQRVWQLAFTPDEKYLLTTNGVSNDVSV----IDVAALKVI  284 (300)
T ss_pred             EcCCCCeEEEEECCCCcEEEEE-----EeCCCcceEEECCCCCEEEEEcCCCCeEEE----EECCCCcEE
Confidence            4 45668999999988877655     234578999999999999886 46899999    999999863

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.97  E-value=3.1e-29  Score=201.94  Aligned_cols=306  Identities=16%  Similarity=0.198  Sum_probs=231.4

Q ss_pred             CCcceeeeecccccCcEEEEEEcCCC--CeEEEEecCCcEEEEeCCCC----CeeEEEeeCCCcEEEEEECC-CCcEEEE
Q 016458           54 PTDLVCCRTLQGHAGKVYSLDWTSER--NRIVSASQDGRLIVWNALTS----QKTHAIKLPCAWVMTCAFSP-TGQSVAC  126 (389)
Q Consensus        54 ~~~~~~~~~l~~h~~~v~~~~~~~~~--~~l~~~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~  126 (389)
                      ..........+-|.++|++++|+|..  +++|+|..-|.|-+||+.+.    ..+..+..|..+|.++.|+| +...+++
T Consensus       173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s  252 (498)
T KOG4328|consen  173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS  252 (498)
T ss_pred             cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence            34556666778899999999999955  48889999999999999532    33556778889999999999 5578999


Q ss_pred             ecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee-EEEecCcccCCC
Q 016458          127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGH  205 (389)
Q Consensus       127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~  205 (389)
                      .+.||+|++-|++....     ............+..+.|+.+. ..++.+..=|...+||++++.. ...+     ..|
T Consensus       253 sSyDGtiR~~D~~~~i~-----e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~~~-----~lh  321 (498)
T KOG4328|consen  253 SSYDGTIRLQDFEGNIS-----EEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYENL-----RLH  321 (498)
T ss_pred             eccCceeeeeeecchhh-----HHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccchhh-----hhh
Confidence            99999999999987431     1222333345567778888876 4577777777999999998765 3333     567


Q ss_pred             CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc---ceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECC--
Q 016458          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR--  280 (389)
Q Consensus       206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--  280 (389)
                      ...|.+++++|-...+|++++.|++.+|||+|....   ++.....|...|.+..|||.+-.|++.+.|..|+|||..  
T Consensus       322 ~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~  401 (498)
T KOG4328|consen  322 KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCI  401 (498)
T ss_pred             hcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccc
Confidence            789999999999999999999999999999987521   234556799999999999988889999999999999983  


Q ss_pred             --CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEE-EECCCCCe
Q 016458          281 --TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL-GLSADGSA  357 (389)
Q Consensus       281 --~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~  357 (389)
                        ...+...+......+.--......|.|+..++++|..-..|-|+|-..++.+..+.   ......|.++ .|+|-+..
T Consensus       402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~---~P~~~tI~~vn~~HP~~~~  478 (498)
T KOG4328|consen  402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH---DPESSTIPSVNEFHPMRDT  478 (498)
T ss_pred             cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc---Cccccccccceeecccccc
Confidence              33344444333222111124456899999999999999999999999898888763   2222245544 79998874


Q ss_pred             E-EeeeCCCeeEEeecceecc
Q 016458          358 L-CTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       358 l-~~~~~dg~i~i~~~~W~~~  377 (389)
                      + +.++..|.|.|    |--+
T Consensus       479 ~~aG~~s~Gki~v----ft~k  495 (498)
T KOG4328|consen  479 LAAGGNSSGKIYV----FTNK  495 (498)
T ss_pred             eeccCCccceEEE----EecC
Confidence            4 44555788888    7544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.8e-30  Score=215.15  Aligned_cols=326  Identities=19%  Similarity=0.263  Sum_probs=258.1

Q ss_pred             cccccCCCCCcccCCCcc------eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC--CeeEEEeeCCCc
Q 016458           40 GYSRSQGRAPVSFGPTDL------VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAW  111 (389)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~------~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~~~~~~~  111 (389)
                      .+...+++....|+....      .+..+++.|.+-|+.++...+++.|+++|.|-+|++|+...+  -+..++..|...
T Consensus        40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DY  119 (735)
T KOG0308|consen   40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDY  119 (735)
T ss_pred             EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccch
Confidence            567777777777765432      257889999999999999999999999999999999999877  567788899999


Q ss_pred             EEEEEE-CCCCcEEEEecCCCcEEEEeCCCCCC----CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEE
Q 016458          112 VMTCAF-SPTGQSVACGGLDSVCSIFNLNSPTD----KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW  186 (389)
Q Consensus       112 v~~~~~-~~~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  186 (389)
                      |.|+++ .++...+|+|+-|+.|.+||++.+..    ............++...|.+++.++.+ ..+++|+..+.+++|
T Consensus       120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~w  198 (735)
T KOG0308|consen  120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLW  198 (735)
T ss_pred             heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEe
Confidence            999999 78899999999999999999997632    111222222233889999999999987 799999999999999


Q ss_pred             eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEE
Q 016458          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG  266 (389)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  266 (389)
                      |.++.+.+..+     .+|...|..+..++ ++..+++++.||+|++||+... +++.++..|...|.++..+|+-..++
T Consensus       199 Dprt~~kimkL-----rGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~sf~~vY  271 (735)
T KOG0308|consen  199 DPRTCKKIMKL-----RGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSPSFTHVY  271 (735)
T ss_pred             ccccccceeee-----eccccceEEEEEcC-CCCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEeeCCCcceEE
Confidence            99999999988     79999999999998 8999999999999999999987 89999999999999999999999999


Q ss_pred             EEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC-------
Q 016458          267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ-------  339 (389)
Q Consensus       267 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------  339 (389)
                      +|+.||.|..=|+++......+.....     ++..+..+...+-+-+++.|+.|.-|.......+.......       
T Consensus       272 sG~rd~~i~~Tdl~n~~~~tlick~da-----Pv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~  346 (735)
T KOG0308|consen  272 SGGRDGNIYRTDLRNPAKSTLICKEDA-----PVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSN  346 (735)
T ss_pred             ecCCCCcEEecccCCchhheEeecCCC-----chhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCC
Confidence            999999999999998544433333222     36777776555555677788888888653211111100000       


Q ss_pred             -------------CCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          340 -------------NSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       340 -------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                                   .....+|..-+.-.|.++++|=...|.+.+    ||+-.+...
T Consensus       347 ~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~l----wDIl~~~~~  398 (735)
T KOG0308|consen  347 NHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVAL----WDILACVKV  398 (735)
T ss_pred             CccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEE----EEeeeeeeh
Confidence                         001113444455567889999999999999    999876543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=7.5e-29  Score=190.77  Aligned_cols=289  Identities=11%  Similarity=0.180  Sum_probs=221.0

Q ss_pred             EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCc
Q 016458           70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLP  149 (389)
Q Consensus        70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  149 (389)
                      -.|+.|++-|.+||+|+.||.|.|||+.+......+.+|..+|.+++||++|+.|++++.|..|.+||+..+.       
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-------   98 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-------   98 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-------
Confidence            7899999999999999999999999999999989999999999999999999999999999999999998865       


Q ss_pred             ceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC
Q 016458          150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS  229 (389)
Q Consensus       150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  229 (389)
                      +.+.+. ..++|+...|+|...+.+++.-.+..-.+-++..+.. ..++............+..|.+ .++++++|...|
T Consensus        99 ~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKG  175 (405)
T KOG1273|consen   99 PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKG  175 (405)
T ss_pred             ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccC-CCCEEEEecCcc
Confidence            333333 4688999999998877777766665555666554221 2221111011111122234665 899999999999


Q ss_pred             ceEEEeCCCCCcceeEEeeec-cceEEEEEecCCCEEEEEecCCeEEEEECCCCcee------eEeeccCCCCCCCCeeE
Q 016458          230 TARLWDTRVASRAVRTFHGHE-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL------QVYYQQHGENEIPHVTS  302 (389)
Q Consensus       230 ~i~i~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~~~i~~  302 (389)
                      .+.++|..+. +++..++-.. ..|..+.++..|..|+..+.|..|+.|+++.--..      ..............-.+
T Consensus       176 kllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~  254 (405)
T KOG1273|consen  176 KLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK  254 (405)
T ss_pred             eEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence            9999999988 7877777655 67999999999999999999999999998631111      00000000011123578


Q ss_pred             EEeCCCCCEEEEEec-CCcEEEEEcccceEEEeecCcCCCCC-CCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          303 IAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHE-GRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       303 ~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      ++|+.+|.|+++|+. ...++||....|..++.+    .+.. .....+.|+|-...+++- ..|.++|    |....
T Consensus       255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL----hG~kgE~l~DV~whp~rp~i~si-~sg~v~i----w~~~~  323 (405)
T KOG1273|consen  255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL----HGTKGEELLDVNWHPVRPIIASI-ASGVVYI----WAVVQ  323 (405)
T ss_pred             eeecCCccEEEeccccceeEEEEecCCcceeeee----cCCchhheeecccccceeeeeec-cCCceEE----EEeec
Confidence            899999999988874 347999999999999998    5555 567889999988888777 7899999    98754

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=6e-29  Score=206.78  Aligned_cols=303  Identities=16%  Similarity=0.226  Sum_probs=231.4

Q ss_pred             CCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc--EE
Q 016458           47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ--SV  124 (389)
Q Consensus        47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l  124 (389)
                      +.|....|-+..+...++||++.|.||...|.|.+|++|+.||+|+||.+.+|.++..+.... .|.|++|+|.+.  .|
T Consensus       380 Psp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vL  458 (733)
T KOG0650|consen  380 PSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVL  458 (733)
T ss_pred             CChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeE
Confidence            445566777778888999999999999999999999999999999999999999999988764 599999999764  34


Q ss_pred             EEecCCCcEEEEeCCCCCC----------------CCC--------------CCcceeeecccccceEEEEEeeCCCcEE
Q 016458          125 ACGGLDSVCSIFNLNSPTD----------------KDG--------------NLPVSRMLSGHKGYVSCCQYVPDEDTHL  174 (389)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~~----------------~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l  174 (389)
                      |++.. ..+.|-+..-+..                ...              ...-....-.|...|..+.|+..| .+|
T Consensus       459 AvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYl  536 (733)
T KOG0650|consen  459 AVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYL  536 (733)
T ss_pred             EEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceE
Confidence            44433 3344444332210                000              000123444578899999999998 577


Q ss_pred             EEeeC---CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeecc
Q 016458          175 ITSSG---DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG  251 (389)
Q Consensus       175 ~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  251 (389)
                      ++...   ...|.|.++........|     ....+.+.++.|+| ...+|++++ ...|++||+... ..+..+.....
T Consensus       537 atV~~~~~~~~VliHQLSK~~sQ~PF-----~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kq-elvKkL~tg~k  608 (733)
T KOG0650|consen  537 ATVMPDSGNKSVLIHQLSKRKSQSPF-----RKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQ-ELVKKLLTGSK  608 (733)
T ss_pred             EEeccCCCcceEEEEecccccccCch-----hhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHH-HHHHHHhcCCe
Confidence            77654   457889999877666655     46677899999999 555566555 468999999875 66666666667


Q ss_pred             ceEEEEEecCCCEEEEEecCCeEEEEECCCCcee-eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc---
Q 016458          252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL---  327 (389)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---  327 (389)
                      .|..++.+|.|..|+.|+.|+.+..||+.-.... ..+..+..     .+++++|++.-.++++|+.||.+.||.-.   
T Consensus       609 wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~-----avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~  683 (733)
T KOG0650|consen  609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK-----AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN  683 (733)
T ss_pred             eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh-----hhhhhhhccccceeeeecCCCcEEEEeeeeeh
Confidence            8999999999999999999999999999876443 33333222     49999999999999999999999998532   


Q ss_pred             ---cce---EEEeecCcCCCCCCC----eeEEEECCCCCeEEeeeCCCeeEE
Q 016458          328 ---LAK---VVLNLGSLQNSHEGR----ITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       328 ---~~~---~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                         ...   ++..+    .+|...    |....|+|....|+++|.||+|++
T Consensus       684 Dl~qnpliVPlK~L----~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirl  731 (733)
T KOG0650|consen  684 DLLQNPLIVPLKRL----RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRL  731 (733)
T ss_pred             hhhcCCceEeeeec----cCceeecccceEeecccCCCceEEecCCCceEEe
Confidence               222   33444    566654    889999999999999999999999

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3e-29  Score=202.19  Aligned_cols=259  Identities=22%  Similarity=0.347  Sum_probs=215.5

Q ss_pred             eEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcc----------eeee-cccccceEEEEEeeCC
Q 016458          102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV----------SRML-SGHKGYVSCCQYVPDE  170 (389)
Q Consensus       102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~----------~~~~-~~~~~~v~~~~~~~~~  170 (389)
                      ...+..|.-++.+++++|++++.++++.+|+|.=|++.++......++.          ...- ..|...+.+++.++++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            4455678888999999999999999999999999999887633111111          1111 4889999999999998


Q ss_pred             CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec
Q 016458          171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE  250 (389)
Q Consensus       171 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  250 (389)
                       .+|++|+.|..|.||+..+.+.+..+     .+|.+.|.+++|-. +.+.+++++.|..+++|++... ..+.++.+|.
T Consensus       215 -kylatgg~d~~v~Iw~~~t~ehv~~~-----~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~-s~vetlyGHq  286 (479)
T KOG0299|consen  215 -KYLATGGRDRHVQIWDCDTLEHVKVF-----KGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQL-SYVETLYGHQ  286 (479)
T ss_pred             -cEEEecCCCceEEEecCcccchhhcc-----cccccceeeeeeec-CccceeeeecCCceEEEehhHh-HHHHHHhCCc
Confidence             89999999999999999999999998     89999999999997 7788999999999999999987 7788899999


Q ss_pred             cceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce
Q 016458          251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK  330 (389)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (389)
                      ..|.+|....-++.+.+|+.|.++++|++.....+ .+..+..     .+-+++|-. ...+++|+.||.|.+|++...+
T Consensus       287 d~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifrg~~~-----sidcv~~In-~~HfvsGSdnG~IaLWs~~KKk  359 (479)
T KOG0299|consen  287 DGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFRGGEG-----SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKK  359 (479)
T ss_pred             cceeeechhcccceEEeccccceeEEEecccccee-eeeCCCC-----CeeeEEEec-ccceeeccCCceEEEeeecccC
Confidence            99999998888888888889999999999654333 3333322     388888864 4688999999999999999999


Q ss_pred             EEEeecCcCCC--------CCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          331 VVLNLGSLQNS--------HEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       331 ~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      ++.+.......        +...|++++..|...++++|+.+|.|++    |.+++|
T Consensus       360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrL----W~i~~g  412 (479)
T KOG0299|consen  360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRL----WKIEDG  412 (479)
T ss_pred             ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEE----EEecCC
Confidence            88877532111        1127899999999999999999999999    999998

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2e-29  Score=194.34  Aligned_cols=265  Identities=24%  Similarity=0.360  Sum_probs=223.9

Q ss_pred             CCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeC------CC-----------------------
Q 016458           48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNA------LT-----------------------   98 (389)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~------~~-----------------------   98 (389)
                      ....|......|+.++.||.+.|+++.|++.+.++++++.|++..||..      ..                       
T Consensus       171 TA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~  250 (481)
T KOG0300|consen  171 TARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDT  250 (481)
T ss_pred             ceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccc
Confidence            3457888899999999999999999999999999999999999999962      00                       


Q ss_pred             -------C----CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEe
Q 016458           99 -------S----QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV  167 (389)
Q Consensus        99 -------~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (389)
                             +    .++..+.+|.+.|.++.|...|+.+++++.|.+..+||++++.       +...+.+|....+.++-+
T Consensus       251 d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge-------~v~~LtGHd~ELtHcstH  323 (481)
T KOG0300|consen  251 DSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE-------VVNILTGHDSELTHCSTH  323 (481)
T ss_pred             ccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc-------eeccccCcchhccccccC
Confidence                   0    1345667888999999999999999999999999999999876       788899999999999999


Q ss_pred             eCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE
Q 016458          168 PDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF  246 (389)
Q Consensus       168 ~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  246 (389)
                      |.. .++++++.|.+.++||++.. ..+..|     .+|...|+++.|..  +..+++|+.|.+|++||+++...++..+
T Consensus       324 ptQ-rLVvTsSrDtTFRLWDFReaI~sV~VF-----QGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRsplATI  395 (481)
T KOG0300|consen  324 PTQ-RLVVTSSRDTTFRLWDFREAIQSVAVF-----QGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRSPLATI  395 (481)
T ss_pred             Ccc-eEEEEeccCceeEeccchhhcceeeee-----cccccceeEEEEec--CCceeecCCCceEEEeeeccccCcceee
Confidence            985 78999999999999999853 344556     79999999999984  4568999999999999999988888888


Q ss_pred             eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC--EEEEEecCCcEEEE
Q 016458          247 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDCYVW  324 (389)
Q Consensus       247 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~  324 (389)
                      . ...+++.++.+..+..|+.-..+..|++||+.. ..+..++......|...|+|++|..+..  -|++++.|..+.-|
T Consensus       396 R-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW  473 (481)
T KOG0300|consen  396 R-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG-NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW  473 (481)
T ss_pred             e-cCCccceeEeecCCceEEeccCCceEEEEecCC-CccccCCcccccccceeeeeeeccccCcccccccccccceeeee
Confidence            7 567899999998888999999999999999874 4455555444455666799999986543  57788899999999


Q ss_pred             Ecccc
Q 016458          325 DTLLA  329 (389)
Q Consensus       325 d~~~~  329 (389)
                      ++...
T Consensus       474 ~in~p  478 (481)
T KOG0300|consen  474 KINTP  478 (481)
T ss_pred             Eeccc
Confidence            87643

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=2.2e-28  Score=210.75  Aligned_cols=303  Identities=17%  Similarity=0.300  Sum_probs=244.4

Q ss_pred             ccCCCcceeeeecccccCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCeeEEEe-eCCCcEEEEEECCCCcEEEEec
Q 016458           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTGQSVACGG  128 (389)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~  128 (389)
                      .+....-+.+.+|+.-.++|+.++|.-||+ .+|+|+..|.+.+||++..+....+. .|.+.|....|.|....+++++
T Consensus       228 ifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~  307 (910)
T KOG1539|consen  228 IFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG  307 (910)
T ss_pred             EEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc
Confidence            344455566677775579999999999996 67788888999999999888877766 7778899999999999999999


Q ss_pred             CCCcEEEEeCCCCCC-------------------------------------------------------------CC--
Q 016458          129 LDSVCSIFNLNSPTD-------------------------------------------------------------KD--  145 (389)
Q Consensus       129 ~dg~i~vw~~~~~~~-------------------------------------------------------------~~--  145 (389)
                      .|+.+++|-.+++..                                                             +.  
T Consensus       308 ~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~  387 (910)
T KOG1539|consen  308 ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNV  387 (910)
T ss_pred             CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccc
Confidence            998888886663220                                                             00  


Q ss_pred             -----CCCcce-------------------------------------------eeecccccceEEEEEeeCCCcEEEEe
Q 016458          146 -----GNLPVS-------------------------------------------RMLSGHKGYVSCCQYVPDEDTHLITS  177 (389)
Q Consensus       146 -----~~~~~~-------------------------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~  177 (389)
                           ...+..                                           ..++.....+++++.++-| ++.+.|
T Consensus       388 ~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG  466 (910)
T KOG1539|consen  388 FSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIG  466 (910)
T ss_pred             cchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEe
Confidence                 000000                                           0001112467788888887 788999


Q ss_pred             eCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEE
Q 016458          178 SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK  257 (389)
Q Consensus       178 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~  257 (389)
                      +..|.|-+||+.+|-....+...  ..|..+|+.++... -++.+++++.+|.+.+||.... ..+..+. -...+.++.
T Consensus       467 ~S~G~Id~fNmQSGi~r~sf~~~--~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k-~l~~~l~-l~~~~~~iv  541 (910)
T KOG1539|consen  467 YSKGTIDRFNMQSGIHRKSFGDS--PAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKK-VLKKSLR-LGSSITGIV  541 (910)
T ss_pred             ccCCeEEEEEcccCeeecccccC--ccccCceeEEEecC-CCceEEEccCcceEEEEecCCc-ceeeeec-cCCCcceee
Confidence            99999999999999888877422  58999999999997 7788999999999999999876 4444544 355688899


Q ss_pred             EecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC
Q 016458          258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS  337 (389)
Q Consensus       258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  337 (389)
                      .+.....++.+..|-.|+++|..+.+..+.+..+..     .|++++|||||++|++++.|++|++||+.++..+-.+  
T Consensus       542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n-----ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~--  614 (910)
T KOG1539|consen  542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN-----RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL--  614 (910)
T ss_pred             eeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc-----ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE--
Confidence            998888999999999999999999888888866554     4999999999999999999999999999999999887  


Q ss_pred             cCCCCCCCeeEEEECCCCCeEEeeeCC-CeeEE
Q 016458          338 LQNSHEGRITCLGLSADGSALCTGSWD-TNLKV  369 (389)
Q Consensus       338 ~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i  369 (389)
                         .-+.+.+++.|+|+|.+|||+..| ..|++
T Consensus       615 ---~vd~~~~sls~SPngD~LAT~Hvd~~gIyl  644 (910)
T KOG1539|consen  615 ---LVDSPCTSLSFSPNGDFLATVHVDQNGIYL  644 (910)
T ss_pred             ---ecCCcceeeEECCCCCEEEEEEecCceEEE
Confidence               456789999999999999999999 66888

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.9e-29  Score=201.89  Aligned_cols=265  Identities=19%  Similarity=0.286  Sum_probs=214.3

Q ss_pred             CcEEEEeCCCCCeeEEEeeCC-CcEEEEEECCCCcEEEEec-CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE
Q 016458           89 GRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY  166 (389)
Q Consensus        89 g~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (389)
                      .++.+||+.+|....++++.. ..-.++..- ++.+++++. ....+.+|.+.....       .....--.++|.+++-
T Consensus        18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~-------~~q~~v~Pg~v~al~s   89 (476)
T KOG0646|consen   18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQ-------VVQYIVLPGPVHALAS   89 (476)
T ss_pred             cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhh-------hhhhcccccceeeeec
Confidence            569999999999998888762 222222221 335555554 456799999876331       1123334688999999


Q ss_pred             eeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC--------
Q 016458          167 VPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV--------  238 (389)
Q Consensus       167 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------  238 (389)
                      +|.| .+++.|+..|.|++|.+.+|..+..+     ..|...|+++.|+. ++.+|++|+.||.|.+|++..        
T Consensus        90 ~n~G-~~l~ag~i~g~lYlWelssG~LL~v~-----~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~  162 (476)
T KOG0646|consen   90 SNLG-YFLLAGTISGNLYLWELSSGILLNVL-----SAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDH  162 (476)
T ss_pred             CCCc-eEEEeecccCcEEEEEeccccHHHHH-----HhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCC
Confidence            9997 77888879999999999999999988     78999999999997 899999999999999997632        


Q ss_pred             CCcceeEEeeeccceEEEEEecC--CCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458          239 ASRAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (389)
Q Consensus       239 ~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (389)
                      ...++..+..|.-+|+.+...+.  ..+|++++.|.++++||+..+..+..+..+..      +.+++.+|.++.+++|+
T Consensus       163 ~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s------i~av~lDpae~~~yiGt  236 (476)
T KOG0646|consen  163 SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS------IKAVALDPAERVVYIGT  236 (476)
T ss_pred             CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc------ceeEEEcccccEEEecC
Confidence            23678889999999999988764  46899999999999999999998888766543      89999999999999999


Q ss_pred             cCCcEEEEEcccce----------------EEEeecCcCCCCCC--CeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          317 SNGDCYVWDTLLAK----------------VVLNLGSLQNSHEG--RITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       317 ~dg~i~i~d~~~~~----------------~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      .+|.|.+.++....                .+..+    .+|.+  .|+|++++-||.+|++|+.||.++|    ||+.+
T Consensus       237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~----~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vcv----Wdi~S  308 (476)
T KOG0646|consen  237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL----VGHENESAITCLAISTDGTLLLSGDEDGKVCV----WDIYS  308 (476)
T ss_pred             CcceEEeeehhcCCcccccccccccccccceeeee----ccccCCcceeEEEEecCccEEEeeCCCCCEEE----Eecch
Confidence            99999998875432                22233    57877  9999999999999999999999999    99988


Q ss_pred             Cccc
Q 016458          379 GALS  382 (389)
Q Consensus       379 ~~~~  382 (389)
                      .+..
T Consensus       309 ~Q~i  312 (476)
T KOG0646|consen  309 KQCI  312 (476)
T ss_pred             HHHH
Confidence            7644

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.3e-27  Score=200.16  Aligned_cols=226  Identities=19%  Similarity=0.292  Sum_probs=185.4

Q ss_pred             CCCcccCCC-cceeeeecccccC-cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458           47 RAPVSFGPT-DLVCCRTLQGHAG-KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV  124 (389)
Q Consensus        47 ~~~~~~~~~-~~~~~~~l~~h~~-~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  124 (389)
                      +....|.+. .+-+...+.|+.+ .|-+++|++ +..|++.+.+|.|.-||+.++++...+....+.|.+++.+|.+..+
T Consensus        47 g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l  125 (691)
T KOG2048|consen   47 GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTIL  125 (691)
T ss_pred             CcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceE
Confidence            444566665 4556667888765 899999994 5588999999999999999999999999999999999999999999


Q ss_pred             EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCccc--
Q 016458          125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ--  202 (389)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--  202 (389)
                      +.|+.||.+..++...+     .+.....+...++.|.++.|+|++ ..+++|+.||.|++||...+...........  
T Consensus       126 ~IgcddGvl~~~s~~p~-----~I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l  199 (691)
T KOG2048|consen  126 AIGCDDGVLYDFSIGPD-----KITYKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL  199 (691)
T ss_pred             EeecCCceEEEEecCCc-----eEEEEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeeccccc
Confidence            99999997777776653     333455566668999999999997 6799999999999999999987774322211  


Q ss_pred             -CCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCC
Q 016458          203 -SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT  281 (389)
Q Consensus       203 -~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  281 (389)
                       .....-|.++.+.  ....|++|...|+|.+||...+ ..++.+..|...|.+++..++++++++++.|+.|..|...+
T Consensus       200 ~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~g-TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~  276 (691)
T KOG2048|consen  200 SKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFG-TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTT  276 (691)
T ss_pred             ccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCc-chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecC
Confidence             1233446777777  4568999999999999999988 88889999999999999999999999999999988887654


Q ss_pred             C
Q 016458          282 G  282 (389)
Q Consensus       282 ~  282 (389)
                      .
T Consensus       277 ~  277 (691)
T KOG2048|consen  277 N  277 (691)
T ss_pred             C
Confidence            4

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.5e-29  Score=202.16  Aligned_cols=250  Identities=18%  Similarity=0.234  Sum_probs=207.3

Q ss_pred             cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCC--
Q 016458           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT--  142 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~--  142 (389)
                      --.++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+..+..|...|+|+.|+.||.+|++|+.||.|.+|.+..--  
T Consensus        79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a  158 (476)
T KOG0646|consen   79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA  158 (476)
T ss_pred             ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence            346789999999999999999899999999999999999999999999999999999999999999999999876522  


Q ss_pred             CCCCCCcceeeecccccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcE
Q 016458          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM  221 (389)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  221 (389)
                      ...........+..|.-+|+++...+.+ ..++++++.|.++++||+..+..+..+      ..+..+.+++.+| ....
T Consensus       159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti------~fp~si~av~lDp-ae~~  231 (476)
T KOG0646|consen  159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI------TFPSSIKAVALDP-AERV  231 (476)
T ss_pred             ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE------ecCCcceeEEEcc-cccE
Confidence            1222455778899999999999988752 368999999999999999999988887      5678899999999 8889


Q ss_pred             EEEeeCCCceEEEeCCCCC---------------cceeEEeeecc--ceEEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458          222 FVSGSCDSTARLWDTRVAS---------------RAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ  284 (389)
Q Consensus       222 l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  284 (389)
                      +++|+.+|.|.+.++....               ..+..+.+|.+  .|+|++++-||.+|++|+.||.|++||+.+.++
T Consensus       232 ~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~  311 (476)
T KOG0646|consen  232 VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC  311 (476)
T ss_pred             EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence            9999999999998875432               23456778888  999999999999999999999999999999988


Q ss_pred             eeEeeccCCCCCCCCeeEEEeCCCCCEEEEE-ecCCcEEEEEc
Q 016458          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDT  326 (389)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~  326 (389)
                      ++++....+     +|+.+.+.|-.+-.+.+ .....+-.|++
T Consensus       312 iRtl~~~kg-----pVtnL~i~~~~~~~~l~~~~~ps~~~~~l  349 (476)
T KOG0646|consen  312 IRTLQTSKG-----PVTNLQINPLERGIILFEHKQPSLPNPHL  349 (476)
T ss_pred             HHHHhhhcc-----ccceeEeeccccceecccccCccCCchHh
Confidence            888765333     48888886654433332 22334444443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=2.4e-28  Score=207.44  Aligned_cols=305  Identities=15%  Similarity=0.203  Sum_probs=241.3

Q ss_pred             EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee---EEEeeCCCcEEEEEECCC-----------CcEEEEecCCCcEEE
Q 016458           70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKT---HAIKLPCAWVMTCAFSPT-----------GQSVACGGLDSVCSI  135 (389)
Q Consensus        70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~---~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~v  135 (389)
                      ..++.|++....|.+...|..++|||+++...+   ..+--|...|+.+.--|-           ...+.+++.|++|++
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl  406 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL  406 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence            457889999999999999999999999876544   344457677777665551           235899999999999


Q ss_pred             EeCCCCCCCCC------------------CCc------------ceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEE
Q 016458          136 FNLNSPTDKDG------------------NLP------------VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL  185 (389)
Q Consensus       136 w~~~~~~~~~~------------------~~~------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  185 (389)
                      |++........                  ...            ...........+.+++.+|++ ++|++|...|.+++
T Consensus       407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrV  485 (1080)
T KOG1408|consen  407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-QHLASGDRGGNLRV  485 (1080)
T ss_pred             eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-ceecccCccCceEE
Confidence            99987331110                  000            000111223468999999998 78999999999999


Q ss_pred             EeCCCCeeEEEecCcccCCCCCCeeEEEeeCC--CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC-
Q 016458          186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-  262 (389)
Q Consensus       186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-  262 (389)
                      |++........+     ..|...|.|+.++.+  ..++|++++.|..|++||......++.++.+|...|+++.|--+| 
T Consensus       486 y~Lq~l~~~~~~-----eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gl  560 (1080)
T KOG1408|consen  486 YDLQELEYTCFM-----EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGL  560 (1080)
T ss_pred             EEehhhhhhhhe-----ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCC
Confidence            999988877777     799999999999853  357899999999999999988778889999999999999998877 


Q ss_pred             -CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCC
Q 016458          263 -NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS  341 (389)
Q Consensus       263 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  341 (389)
                       ..+++++.|..|.+--.+.......+..++.......+..++..|..+++++++.|..|+|||+.+++..+.++.. ..
T Consensus       561 n~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs-~~  639 (1080)
T KOG1408|consen  561 NRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS-RD  639 (1080)
T ss_pred             ceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc-cc
Confidence             6789999998776543332222333333333333445899999999999999999999999999999999999754 56


Q ss_pred             CCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccCcc
Q 016458          342 HEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPWG  385 (389)
Q Consensus       342 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~~~  385 (389)
                      |++....+...|.|-||++.+.|.++.+    +|+.+|+....|
T Consensus       640 ~eG~lIKv~lDPSgiY~atScsdktl~~----~Df~sgEcvA~m  679 (1080)
T KOG1408|consen  640 HEGDLIKVILDPSGIYLATSCSDKTLCF----VDFVSGECVAQM  679 (1080)
T ss_pred             CCCceEEEEECCCccEEEEeecCCceEE----EEeccchhhhhh
Confidence            7788889999999999999999999999    999999887644

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.97  E-value=1.1e-28  Score=190.87  Aligned_cols=299  Identities=21%  Similarity=0.311  Sum_probs=225.4

Q ss_pred             ecccccCcEEEEEEcC-----CCCeEEEEecCCcEEEEeCCCCCeeEEEe-----eCCCcEEEEEECCC----CcEEEEe
Q 016458           62 TLQGHAGKVYSLDWTS-----ERNRIVSASQDGRLIVWNALTSQKTHAIK-----LPCAWVMTCAFSPT----GQSVACG  127 (389)
Q Consensus        62 ~l~~h~~~v~~~~~~~-----~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-----~~~~~v~~~~~~~~----~~~l~~~  127 (389)
                      ....|..+|..++|++     +-..+|+++.+ .+.+|+.....-+..++     .+.+....++|+-+    ..++|+|
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            3456889999999995     22466776654 78999875443222222     24566788888653    4578999


Q ss_pred             cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458          128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (389)
Q Consensus       128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  207 (389)
                      +.-|.|+|.|+.+++       ....+.+|...|+.+.+.|+.++++++++.|..|++||+++..++..+...  .+|.+
T Consensus       112 G~~GvIrVid~~~~~-------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~--egHrd  182 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQ-------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV--EGHRD  182 (385)
T ss_pred             cceeEEEEEecchhh-------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc--ccccC
Confidence            999999999998866       778899999999999999999999999999999999999999999999765  78999


Q ss_pred             CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC------------------------c---ceeEEeeeccceEEEEEec
Q 016458          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS------------------------R---AVRTFHGHEGDVNTVKFFP  260 (389)
Q Consensus       208 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------------------~---~~~~~~~~~~~i~~~~~~~  260 (389)
                      .|.++.|++ ++.++++++.|.+|++|++....                        .   ...+-..|...|.|+.|- 
T Consensus       183 eVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-  260 (385)
T KOG1034|consen  183 EVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-  260 (385)
T ss_pred             cEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH-
Confidence            999999999 88899999999999999987321                        0   001223477778888885 


Q ss_pred             CCCEEEEEecCCeEEEEEC-CCCceeeEeecc----------CCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458          261 DGNRFGTGSDDGTCRLFDI-RTGHQLQVYYQQ----------HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (389)
Q Consensus       261 ~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (389)
                       |+++++-+.++.|..|.. .-.+.+......          .-+...-+....+|+|-+++||.|...|.|++||++..
T Consensus       261 -gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~  339 (385)
T KOG1034|consen  261 -GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN  339 (385)
T ss_pred             -hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence             579999999999999987 222221111111          11111112344567788999999999999999999987


Q ss_pred             eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          330 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      ++...-..........|...+|+.||.+|+..++|++|--    ||.-
T Consensus       340 ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwr----wdrv  383 (385)
T KOG1034|consen  340 EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWR----WDRV  383 (385)
T ss_pred             CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEE----EEee
Confidence            6642221111334567999999999999999999999987    8753

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.2e-29  Score=185.98  Aligned_cols=257  Identities=18%  Similarity=0.245  Sum_probs=201.8

Q ss_pred             eeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEee-CCCcEEEEeeCCCeEE
Q 016458          106 KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP-DEDTHLITSSGDQTCV  184 (389)
Q Consensus       106 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~  184 (389)
                      ..|...|..+...--|++|++++.|++|+|+..+...    .......+.+|.++|..++|.. .-+.+|++++.||.|.
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~----~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG----QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC----CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            3566777777777889999999999999999998744    2357788999999999999975 3237999999999999


Q ss_pred             EEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC-CcEEEEeeCCCceEEEeCCCCC--cceeEEeeeccceEEEEEecC
Q 016458          185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPD  261 (389)
Q Consensus       185 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~i~~~~~~~~  261 (389)
                      ||.-+++.-.....   ...|...|++++|.|.+ +-+|++++.||.|.+.+.+...  ........|.-.|++++|.|.
T Consensus        84 iWke~~g~w~k~~e---~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa  160 (299)
T KOG1332|consen   84 IWKEENGRWTKAYE---HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA  160 (299)
T ss_pred             EEecCCCchhhhhh---hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence            99988884333221   16789999999999843 4578899999999999987652  234456789999999999995


Q ss_pred             ---C-----------CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC----CEEEEEecCCcEEE
Q 016458          262 ---G-----------NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG----RLLFAGYSNGDCYV  323 (389)
Q Consensus       262 ---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i  323 (389)
                         |           +.|++|+.|..|+||+...+.-....   ....|...|+.++|.|.-    .+|++++.||.+.|
T Consensus       161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~---~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI  237 (299)
T KOG1332|consen  161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER---TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII  237 (299)
T ss_pred             CCCccccccCcccccceeeccCCccceeeeecCCcchhhhh---hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence               4           66999999999999999886322221   124556689999999964    48999999999999


Q ss_pred             EEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          324 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       324 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      |-............ .......+..+.||..|.+|+.++.|+.+.+    |.-.
T Consensus       238 wt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtl----wke~  286 (299)
T KOG1332|consen  238 WTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTL----WKEN  286 (299)
T ss_pred             EEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEE----EEeC
Confidence            98763212211111 1445678999999999999999999999999    8754

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2.7e-28  Score=186.59  Aligned_cols=246  Identities=18%  Similarity=0.237  Sum_probs=193.2

Q ss_pred             eeCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEE
Q 016458          106 KLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV  184 (389)
Q Consensus       106 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  184 (389)
                      ..+...|.+++||| ...++++++.||+|++|+++...     ....+....|.++|.+++|+.+| ..+++|+.|+.++
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-----~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k   97 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-----QLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAK   97 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCC-----cccchhhhccCCCeEEEEEccCC-ceEEeeccCCceE
Confidence            34567899999999 55666789999999999998732     11235667899999999999998 7899999999999


Q ss_pred             EEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc--EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC
Q 016458          185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR--MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG  262 (389)
Q Consensus       185 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (389)
                      +||+.+++....      ..|..+|.++.|-+ ...  .|++|+.|.+|+.||.|.. .++.++. -.+.+.++..  ..
T Consensus        98 ~wDL~S~Q~~~v------~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~-LPeRvYa~Dv--~~  166 (347)
T KOG0647|consen   98 LWDLASGQVSQV------AAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQ-LPERVYAADV--LY  166 (347)
T ss_pred             EEEccCCCeeee------eecccceeEEEEec-CCCcceeEecccccceeecccCCC-Ceeeeee-ccceeeehhc--cC
Confidence            999999976655      58999999999987 444  8999999999999999987 6666665 3445666555  35


Q ss_pred             CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc--eEEEeecCcCC
Q 016458          263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA--KVVLNLGSLQN  340 (389)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~  340 (389)
                      .+++++..+..|.+|+++.+.........   .....+++++..++....+.|+-+|.+.|..+..+  +.-.++    +
T Consensus       167 pm~vVata~r~i~vynL~n~~te~k~~~S---pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtF----k  239 (347)
T KOG0647|consen  167 PMAVVATAERHIAVYNLENPPTEFKRIES---PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTF----K  239 (347)
T ss_pred             ceeEEEecCCcEEEEEcCCCcchhhhhcC---cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeE----E
Confidence            57889999999999999765433222111   12224889998888888899999999999998876  333333    3


Q ss_pred             CCC---------CCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          341 SHE---------GRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       341 ~~~---------~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      .|.         ..|++|+|+|.-..|+|+|.||++..    ||-+..
T Consensus       240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~F----WDkdar  283 (347)
T KOG0647|consen  240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSF----WDKDAR  283 (347)
T ss_pred             EeccCCCCCCceEEecceEeecccceEEEecCCceEEE----ecchhh
Confidence            333         36889999998889999999999999    997654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.3e-27  Score=183.38  Aligned_cols=278  Identities=16%  Similarity=0.287  Sum_probs=205.3

Q ss_pred             ccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC----CeeEEEeeCCCcEEEEEECC--CCcEEEEecCCCcEEEEe
Q 016458           64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS----QKTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVCSIFN  137 (389)
Q Consensus        64 ~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw~  137 (389)
                      .+|.+-|.|+.|.+.|+++|+|+.|++|+|||..+.    ......+.|.+.|..+.|.+  -|+.+|+++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            479999999999999999999999999999996443    35566788999999999965  689999999999999998


Q ss_pred             CCCCC--CCCCCCcceeeecccccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCeeEEEecCc--------ccCCCC
Q 016458          138 LNSPT--DKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGE--------FQSGHT  206 (389)
Q Consensus       138 ~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~  206 (389)
                      -....  .....+....++....+.|++++|.|.. +-.+++++.||.|+||+......+......        ....+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            74322  2224556667778888999999999963 256889999999999987765433322111        112456


Q ss_pred             CCeeEEEeeCC--CCcEEEEeeCC-----CceEEEeCCCCC---cceeEEeeeccceEEEEEecC----CCEEEEEecCC
Q 016458          207 ADVLSVSISGS--NSRMFVSGSCD-----STARLWDTRVAS---RAVRTFHGHEGDVNTVKFFPD----GNRFGTGSDDG  272 (389)
Q Consensus       207 ~~v~~~~~~~~--~~~~l~~~~~d-----g~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg  272 (389)
                      .+..|+.|+|.  ...+|++|+.+     +.+.||......   ..+..+.+|..+|+.++|.|+    ...|++++.||
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence            67889999873  34578887765     478899876553   234566789999999999994    46799999999


Q ss_pred             eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEEC
Q 016458          273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  352 (389)
Q Consensus       273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  352 (389)
                       |+||.+....... . . . .     +    ..|+        .-+.   +   .-+.+..+    ..|.+.|..+.|+
T Consensus       250 -v~I~~v~~~~s~i-~-~-e-e-----~----~~~~--------~~~~---l---~v~~vs~~----~~H~~~VWrv~wN  297 (361)
T KOG2445|consen  250 -VRIFKVKVARSAI-E-E-E-E-----V----LAPD--------LMTD---L---PVEKVSEL----DDHNGEVWRVRWN  297 (361)
T ss_pred             -EEEEEEeeccchh-h-h-h-c-----c----cCCC--------Cccc---c---ceEEeeec----cCCCCceEEEEEe
Confidence             9999987532111 0 0 0 0     0    0011        0001   1   12334445    7899999999999


Q ss_pred             CCCCeEEeeeCCCeeEEeecceecc
Q 016458          353 ADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       353 ~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      -.|..|++.|.||.|++    |...
T Consensus       298 mtGtiLsStGdDG~VRL----Wkan  318 (361)
T KOG2445|consen  298 MTGTILSSTGDDGCVRL----WKAN  318 (361)
T ss_pred             eeeeEEeecCCCceeee----hhhh
Confidence            99999999999999999    8754

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.97  E-value=4.8e-27  Score=191.78  Aligned_cols=300  Identities=19%  Similarity=0.296  Sum_probs=236.9

Q ss_pred             CcccCCCcceeeeecccccCcEEEEEEcC--CCCeEEEE--ecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458           49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTS--ERNRIVSA--SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV  124 (389)
Q Consensus        49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~--~~~~l~~~--~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  124 (389)
                      ...|+...+..++.+-.....|+|++|++  .|.+|+.-  +.+..+.+||...+......+..++.|....|+|.+..+
T Consensus       136 vriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nl  215 (626)
T KOG2106|consen  136 VRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNL  215 (626)
T ss_pred             eeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcE
Confidence            34699899999999988888999999998  34455443  456678999999999888888888899999999977777


Q ss_pred             EEecCCCcEEEEeCCCCCCCCCCCcceeeecc-cccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccC
Q 016458          125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS  203 (389)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  203 (389)
                      ++....|.+..|+++.+..    .+....+.. .+..|.|++|.++++  +++|..+|.|.||+..+.......     .
T Consensus       216 iit~Gk~H~~Fw~~~~~~l----~k~~~~fek~ekk~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~~~k~~-----~  284 (626)
T KOG2106|consen  216 IITCGKGHLYFWTLRGGSL----VKRQGIFEKREKKFVLCVTFLENGD--VITGDSGGNILIWSKGTNRISKQV-----H  284 (626)
T ss_pred             EEEeCCceEEEEEccCCce----EEEeeccccccceEEEEEEEcCCCC--EEeecCCceEEEEeCCCceEEeEe-----e
Confidence            7666788999999887541    111222222 236799999999874  999999999999999887777766     5


Q ss_pred             CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC---------------------------------------ccee
Q 016458          204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---------------------------------------RAVR  244 (389)
Q Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------------------------------~~~~  244 (389)
                      .|.+.|.+++... ++. |++|+.|..|..||-.-..                                       ....
T Consensus       285 aH~ggv~~L~~lr-~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~  362 (626)
T KOG2106|consen  285 AHDGGVFSLCMLR-DGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL  362 (626)
T ss_pred             ecCCceEEEEEec-Ccc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence            8999999999985 554 5569999999999832110                                       0011


Q ss_pred             EEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEE
Q 016458          245 TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW  324 (389)
Q Consensus       245 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  324 (389)
                      ...+|......++.+|+.+.+++++.|+.+++|+  ..+.........      +..++.|+|.| .+++|+..|...+.
T Consensus       363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d------~~~~~~fhpsg-~va~Gt~~G~w~V~  433 (626)
T KOG2106|consen  363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED------PAECADFHPSG-VVAVGTATGRWFVL  433 (626)
T ss_pred             EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecC------ceeEeeccCcc-eEEEeeccceEEEE
Confidence            2245777788999999999999999999999999  334444333322      37899999999 99999999999999


Q ss_pred             EcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          325 DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       325 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      |.++...+..-     ....+++++.|+|+|.+||.|+.|+.|+|    +.+..+
T Consensus       434 d~e~~~lv~~~-----~d~~~ls~v~ysp~G~~lAvgs~d~~iyi----y~Vs~~  479 (626)
T KOG2106|consen  434 DTETQDLVTIH-----TDNEQLSVVRYSPDGAFLAVGSHDNHIYI----YRVSAN  479 (626)
T ss_pred             ecccceeEEEE-----ecCCceEEEEEcCCCCEEEEecCCCeEEE----EEECCC
Confidence            99985555443     33889999999999999999999999999    888754

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.3e-29  Score=215.32  Aligned_cols=261  Identities=23%  Similarity=0.309  Sum_probs=181.1

Q ss_pred             eeEEEe-eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC---cceeeecccccceEEEEEee---CCC-c
Q 016458          101 KTHAIK-LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL---PVSRMLSGHKGYVSCCQYVP---DED-T  172 (389)
Q Consensus       101 ~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~---~~~-~  172 (389)
                      ..+.+. .|.+.|.++.|+++|+|||+||.|+.|+||.+..........   ..........+.+..+..++   .+. .
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            344455 789999999999999999999999999999987622100000   00000000000011111111   000 0


Q ss_pred             EEEEeeCCCeEEEEeCC----CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee
Q 016458          173 HLITSSGDQTCVLWDIT----TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG  248 (389)
Q Consensus       173 ~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  248 (389)
                      ..-.+..... .+.+..    ..+++..+     .+|...|..+.|+  .+++|++++.|.+|++|++... .++..|. 
T Consensus       338 ~~~~~~~s~~-~~~p~~~f~f~ekP~~ef-----~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~-~CL~~F~-  407 (712)
T KOG0283|consen  338 SSRKGSQSPC-VLLPLKAFVFSEKPFCEF-----KGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRK-ECLKVFS-  407 (712)
T ss_pred             ccccccCCcc-ccCCCccccccccchhhh-----hccchhheecccc--cCCeeEeccccccEEeecCCCc-ceeeEEe-
Confidence            0111112222 122211    12344445     7999999999999  5679999999999999999966 7888776 


Q ss_pred             eccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          249 HEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       249 ~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      |...|+|++|+| |.+||++|+-||.|+||++...+...-.... .     .|++++|.|||++.++|+.+|.+++|+..
T Consensus       408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~-----lITAvcy~PdGk~avIGt~~G~C~fY~t~  481 (712)
T KOG0283|consen  408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-D-----LITAVCYSPDGKGAVIGTFNGYCRFYDTE  481 (712)
T ss_pred             cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-h-----hheeEEeccCCceEEEEEeccEEEEEEcc
Confidence            999999999999 8899999999999999999876655544333 2     39999999999999999999999999998


Q ss_pred             cceEEEeecCcC-----CCCCCCeeEEEECC-CCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          328 LAKVVLNLGSLQ-----NSHEGRITCLGLSA-DGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       328 ~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      ..+.........     ..|. .|+++.|.| +...+++.+.|..|+|    +|..+.++.
T Consensus       482 ~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI----~d~~~~~lv  537 (712)
T KOG0283|consen  482 GLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRI----YDGRDKDLV  537 (712)
T ss_pred             CCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEE----Eeccchhhh
Confidence            777665443211     1233 899999997 3345777889999999    998665543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.97  E-value=2.1e-26  Score=188.03  Aligned_cols=298  Identities=17%  Similarity=0.277  Sum_probs=224.0

Q ss_pred             ccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe---e-CCCcEEEEEECCCCcEEEE
Q 016458           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK---L-PCAWVMTCAFSPTGQSVAC  126 (389)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~~  126 (389)
                      .|+=.........+.-.+.|....|+|.+..|+.....|.+..|+.+.+.......   . ....|.|++|.++|. +++
T Consensus       184 VWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viT  262 (626)
T KOG2106|consen  184 VWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VIT  262 (626)
T ss_pred             hhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEe
Confidence            34333334444555566789999999976655555556899999998887665432   2 225799999999987 688


Q ss_pred             ecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC-------
Q 016458          127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG-------  199 (389)
Q Consensus       127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------  199 (389)
                      |..+|.|.||+.....       ..+....|.+.|.+++...+|  .|++|+.|..|..||-. -+.......       
T Consensus       263 gDS~G~i~Iw~~~~~~-------~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~-y~k~r~~elPe~~G~i  332 (626)
T KOG2106|consen  263 GDSGGNILIWSKGTNR-------ISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDN-YRKLRETELPEQFGPI  332 (626)
T ss_pred             ecCCceEEEEeCCCce-------EEeEeeecCCceEEEEEecCc--cEeecCccceEEecccc-ccccccccCchhcCCe
Confidence            9999999999986643       455555999999999999987  47779999999999832 111100000       


Q ss_pred             -----------------------------cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec
Q 016458          200 -----------------------------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE  250 (389)
Q Consensus       200 -----------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  250 (389)
                                                   ....+|......++.+| ..+.+++++.|+.+++|+ . . ++.-. ..-.
T Consensus       333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~-~-~-k~~wt-~~~~  407 (626)
T KOG2106|consen  333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN-D-H-KLEWT-KIIE  407 (626)
T ss_pred             eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc-C-C-ceeEE-EEec
Confidence                                         01135667788889999 778899999999999999 2 2 33322 2346


Q ss_pred             cceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc-
Q 016458          251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-  329 (389)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-  329 (389)
                      .+..|+.|+|.| .++.|+..|...+.|.++...+.....      ..+++.+.|+|+|.+||+|+.|+.|+||-+... 
T Consensus       408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d------~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g  480 (626)
T KOG2106|consen  408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD------NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG  480 (626)
T ss_pred             CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec------CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC
Confidence            789999999999 999999999999999988444433322      235999999999999999999999999998754 


Q ss_pred             eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          330 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      .......   ..+..+|+.+.|++|+++|.+-+.|-.|-.    |....
T Consensus       481 ~~y~r~~---k~~gs~ithLDwS~Ds~~~~~~S~d~eiLy----W~~~~  522 (626)
T KOG2106|consen  481 RKYSRVG---KCSGSPITHLDWSSDSQFLVSNSGDYEILY----WKPSE  522 (626)
T ss_pred             cEEEEee---eecCceeEEeeecCCCceEEeccCceEEEE----Ecccc
Confidence            4444443   345589999999999999999999998888    95443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1e-27  Score=208.94  Aligned_cols=251  Identities=19%  Similarity=0.312  Sum_probs=211.0

Q ss_pred             eeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEE
Q 016458          106 KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL  185 (389)
Q Consensus       106 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  185 (389)
                      ..|....+.++|.|+|.+|++++.||.|++|+......      ....+..+...|.+++...   .+|++|+.+++|.+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~   80 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------EPETIDISGELVSSIACYS---NHFLTGSEQNTVLR   80 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------CCchhhccCceeEEEeecc---cceEEeeccceEEE
Confidence            35677789999999999999999999999999877521      1222222667777776654   47999999999999


Q ss_pred             EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEE
Q 016458          186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF  265 (389)
Q Consensus       186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  265 (389)
                      |.+..+..-..+     ....-++++++++. ++.+++.|+.|-.|++.+.... .....+.+|.++|.++.|+|++++|
T Consensus        81 y~fps~~~~~iL-----~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p~~~fL  153 (933)
T KOG1274|consen   81 YKFPSGEEDTIL-----ARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDPKGNFL  153 (933)
T ss_pred             eeCCCCCcccee-----eeeeccceEEEEec-CCcEEEeecCceeEEEEecccc-chheeecccCCceeeeeEcCCCCEE
Confidence            999998776555     45677899999998 8899999999999999999987 7788899999999999999999999


Q ss_pred             EEEecCCeEEEEECCCCceeeEeeccCCCCC---CCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCC
Q 016458          266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENE---IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH  342 (389)
Q Consensus       266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  342 (389)
                      |+.+.||.|++||+.++.....+......+.   ...++.++|+|+|..+++...|+.|.+|+..++.....+..  ..+
T Consensus       154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~--~~~  231 (933)
T KOG1274|consen  154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD--KLS  231 (933)
T ss_pred             EEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc--ccc
Confidence            9999999999999999887766644332221   33578899999988888888999999999999999888864  345


Q ss_pred             CCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          343 EGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       343 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      ...+.+++|+|+|+|||+++.||.|.|    ||+++
T Consensus       232 ss~~~~~~wsPnG~YiAAs~~~g~I~v----Wnv~t  263 (933)
T KOG1274|consen  232 SSKFSDLQWSPNGKYIAASTLDGQILV----WNVDT  263 (933)
T ss_pred             ccceEEEEEcCCCcEEeeeccCCcEEE----Eeccc
Confidence            555999999999999999999999999    99994

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.96  E-value=1.2e-28  Score=200.65  Aligned_cols=287  Identities=18%  Similarity=0.248  Sum_probs=224.4

Q ss_pred             CCCCcccCCCcceeeeecccccC--cEEEEEEcCCCCeEEE--EecCCcEEEEeCCCC--CeeEEEeeCCCcEEEEEECC
Q 016458           46 GRAPVSFGPTDLVCCRTLQGHAG--KVYSLDWTSERNRIVS--ASQDGRLIVWNALTS--QKTHAIKLPCAWVMTCAFSP  119 (389)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~h~~--~v~~~~~~~~~~~l~~--~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~~~~~~  119 (389)
                      ....+.|+...+.....+..|+.  .+.++.|+.... |++  .+.|..+++|.-...  +....-......-.|++...
T Consensus        11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s   89 (673)
T KOG4378|consen   11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS   89 (673)
T ss_pred             CCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh
Confidence            34455666666555555555544  488999988764 444  456788999964322  12222222223445555555


Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC
Q 016458          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG  199 (389)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  199 (389)
                      ...++++|+..+.|+|||+....       +.+.+++|...|+++.|+... .++++++..|.|.+..+.++.....+. 
T Consensus        90 ~S~y~~sgG~~~~Vkiwdl~~kl-------~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~-  160 (673)
T KOG4378|consen   90 QSLYEISGGQSGCVKIWDLRAKL-------IHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFT-  160 (673)
T ss_pred             cceeeeccCcCceeeehhhHHHH-------HhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCcccccee-
Confidence            66899999999999999998633       677889999999999999875 799999999999999999998887773 


Q ss_pred             cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEE
Q 016458          200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFD  278 (389)
Q Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d  278 (389)
                         ......|.-+.++|....+|.+++.+|.|.+||.....+.......|..+...|+|+| +..+|++.+.|..|.+||
T Consensus       161 ---~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD  237 (673)
T KOG4378|consen  161 ---IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD  237 (673)
T ss_pred             ---cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence               2334567799999988889999999999999999987555666678999999999999 667889999999999999


Q ss_pred             CCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc-eEEEeecCcCCCCCCCeeEEEECCCC
Q 016458          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADG  355 (389)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (389)
                      .+..+....+...+      +.+.++|+++|.+|++|+..|.|..||++.. .++..+    ..|...|++++|-+..
T Consensus       238 ~~s~~s~~~l~y~~------Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~----sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  238 IRSQASTDRLTYSH------PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR----SAHDASVTRVAFQPSP  305 (673)
T ss_pred             cccccccceeeecC------CcceeeecCCceEEEeecCCceEEEEecccCCCCceEe----eecccceeEEEeeecc
Confidence            99777666654433      4899999999999999999999999999865 455555    7899999999998754

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2e-27  Score=182.46  Aligned_cols=242  Identities=17%  Similarity=0.280  Sum_probs=194.6

Q ss_pred             CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458          108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (389)
Q Consensus       108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  187 (389)
                      +...|..+.|+|.++.|++++.||.+++|++....        ......|..++.+++|.++  ..+++|+.||.|+.+|
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--------l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~D   81 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--------LKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYD   81 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--------hhhheecCCceeeeeccCC--ceEEEeccCceEEEEE
Confidence            45679999999999999999999999999998742        2333458899999999985  5799999999999999


Q ss_pred             CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEE
Q 016458          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT  267 (389)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  267 (389)
                      +.++.....      ..|..++.++..++ ..+.+++|+.|++|++||.+.. .....+. ....|.++..  .++.|++
T Consensus        82 ln~~~~~~i------gth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~-~~~~~~d-~~kkVy~~~v--~g~~LvV  150 (323)
T KOG1036|consen   82 LNTGNEDQI------GTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNK-VVVGTFD-QGKKVYCMDV--SGNRLVV  150 (323)
T ss_pred             ecCCcceee------ccCCCceEEEEeec-cCCeEEEcccCccEEEEecccc-ccccccc-cCceEEEEec--cCCEEEE
Confidence            999877665      47999999999998 7788999999999999999964 3443433 3347877776  4778999


Q ss_pred             EecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc----eEEEeecCcCCCCC
Q 016458          268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----KVVLNLGSLQNSHE  343 (389)
Q Consensus       268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~  343 (389)
                      |+.|..+.+||+++.........   ..-...+.++++-|++.-.++++-||.|.+=.++..    +....+    +.|.
T Consensus       151 g~~~r~v~iyDLRn~~~~~q~re---S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaF----kCHr  223 (323)
T KOG1036|consen  151 GTSDRKVLIYDLRNLDEPFQRRE---SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAF----KCHR  223 (323)
T ss_pred             eecCceEEEEEcccccchhhhcc---ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeE----Eeee
Confidence            99999999999998765553222   222235899999998888899999999988766554    223333    3332


Q ss_pred             ---------CCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcc
Q 016458          344 ---------GRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       344 ---------~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~  381 (389)
                               .+|++|+|+|--..|+|||.||.|.+    ||+.+.+-
T Consensus       224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~----Wd~~~rKr  266 (323)
T KOG1036|consen  224 LSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI----WDLFNRKR  266 (323)
T ss_pred             cccCCceEEEEeceeEeccccceEEecCCCceEEE----ccCcchhh
Confidence                     38999999999889999999999999    99988653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.96  E-value=5.6e-28  Score=202.46  Aligned_cols=293  Identities=17%  Similarity=0.231  Sum_probs=212.3

Q ss_pred             EEEcC---CCCeEEEEecCCcEEEEeCCCCCe------eEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCC
Q 016458           73 LDWTS---ERNRIVSASQDGRLIVWNALTSQK------THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD  143 (389)
Q Consensus        73 ~~~~~---~~~~l~~~~~dg~v~iw~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  143 (389)
                      ..|++   ....|+.+..||.|.++|......      +.....|...|..+.|-|....|++++.|.++++||+.....
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            55655   234799999999999999765433      245567889999999999778899999999999999998652


Q ss_pred             CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE--------------------EEecCc--c
Q 016458          144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT--------------------SVFGGE--F  201 (389)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--------------------~~~~~~--~  201 (389)
                      .     -...+.+|.+.|.+++|.|.++..|++|+.||.|.|||++-...-                    ......  .
T Consensus       135 ~-----G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k  209 (720)
T KOG0321|consen  135 V-----GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK  209 (720)
T ss_pred             e-----cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence            1     223478999999999999999999999999999999998743210                    000000  0


Q ss_pred             cCCCCCCeeE---EEeeCCCCcEEEEeeC-CCceEEEeCCCCCcce-------eEEeee---ccceEEEEEecCCCEEEE
Q 016458          202 QSGHTADVLS---VSISGSNSRMFVSGSC-DSTARLWDTRVASRAV-------RTFHGH---EGDVNTVKFFPDGNRFGT  267 (389)
Q Consensus       202 ~~~~~~~v~~---~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~-------~~~~~~---~~~i~~~~~~~~~~~l~~  267 (389)
                      ...+...|.+   +.+.. +...|++++. |+.|++||++......       ..+.-|   .-.+.++.....|.+|++
T Consensus       210 ~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A  288 (720)
T KOG0321|consen  210 WKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA  288 (720)
T ss_pred             cccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence            0123333433   33443 6677888777 9999999999763221       112222   235778888888899999


Q ss_pred             EecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCee
Q 016458          268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT  347 (389)
Q Consensus       268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  347 (389)
                      .+.|+.|++|++.+...-.........+... ...-..+|++.++++|+.|...++|.+.+.+....+.   .+|.-.|+
T Consensus       289 sCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf-~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l---~Ght~eVt  364 (720)
T KOG0321|consen  289 SCTDNSIYFYNMRSLSISPVAEFSGKLNSSF-YVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL---LGHTREVT  364 (720)
T ss_pred             EecCCcEEEEeccccCcCchhhccCccccee-eeeeecCCCCceEeccCCCcceeeeeecCccCChhhh---hCcceEEE
Confidence            9999999999998754332222222221111 2334578999999999999999999998866554443   79999999


Q ss_pred             EEEECCC-CCeEEeeeCCCeeEEeecceecccC
Q 016458          348 CLGLSAD-GSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       348 ~~~~~~~-~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      +++|.|. -.-+++++.|-.++|    |++.++
T Consensus       365 ~V~w~pS~~t~v~TcSdD~~~ki----W~l~~~  393 (720)
T KOG0321|consen  365 TVRWLPSATTPVATCSDDFRVKI----WRLSNG  393 (720)
T ss_pred             EEeeccccCCCceeeccCcceEE----EeccCc
Confidence            9999873 335778899999999    999766

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=1.9e-27  Score=201.04  Aligned_cols=300  Identities=22%  Similarity=0.276  Sum_probs=236.1

Q ss_pred             ecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--eeEEEe-----eCCCcEEEEEECCCCcEEEEecCCCcEE
Q 016458           62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIK-----LPCAWVMTCAFSPTGQSVACGGLDSVCS  134 (389)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~  134 (389)
                      .+.||.+-|.++.|+|.+..|++++.|.++.+|...+..  -+....     +.......+.|+|+++.+++-+..|-.+
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            455999999999999999999999999999999765542  222222     2334588899999999999999999999


Q ss_pred             EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEE
Q 016458          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVS  213 (389)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~  213 (389)
                      +|....    ...+.......+|.+.|.++.|.|.| .+|++.+.|.+-|++-.-.. ..-..+.  .+..|...++|++
T Consensus       342 lWkt~d----~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEia--RPQiHGyDl~c~~  414 (764)
T KOG1063|consen  342 LWKTKD----KTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIA--RPQIHGYDLTCLS  414 (764)
T ss_pred             EEeccC----ccceeeccccccccccceeeeecCCC-CEEEEeccccceeeecccccccceeeec--ccccccccceeee
Confidence            999332    23444566778999999999999998 69999999999999876522 2222222  2257888899999


Q ss_pred             eeCCCCcEEEEeeCCCceEEEeCCC-------------------------------------------CC----------
Q 016458          214 ISGSNSRMFVSGSCDSTARLWDTRV-------------------------------------------AS----------  240 (389)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~-------------------------------------------~~----------  240 (389)
                      +-+ ....|++|.....+|+|+...                                           +.          
T Consensus       415 ~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~  493 (764)
T KOG1063|consen  415 FVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL  493 (764)
T ss_pred             hcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence            997 477888999899999997420                                           00          


Q ss_pred             ----------------------cceeEEeeeccceEEEEEecCCCEEEEEecCC-----eEEEEECCCCceeeEeeccCC
Q 016458          241 ----------------------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGHQLQVYYQQHG  293 (389)
Q Consensus       241 ----------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~  293 (389)
                                            +.++.+.+|...|.+++.+|+++++++++...     .|++|+..+......+..+.-
T Consensus       494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL  573 (764)
T KOG1063|consen  494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL  573 (764)
T ss_pred             ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce
Confidence                                  11233467888999999999999999998653     599999988877776655443


Q ss_pred             CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE-EeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeec
Q 016458          294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV-LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLG  372 (389)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~  372 (389)
                           .|+.++|||||++|++.+.|..+.+|........ ..+. ..+.|.--|.+..|+|++.+++|+|.|.+|++   
T Consensus       574 -----TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa-~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkV---  644 (764)
T KOG1063|consen  574 -----TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFA-CLKAHTRIIWDCSWSPDEKYFATASRDKKVKV---  644 (764)
T ss_pred             -----EEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhc-cccccceEEEEcccCcccceeEEecCCceEEE---
Confidence                 4999999999999999999999999987543221 1111 12789999999999999999999999999999   


Q ss_pred             ceecccC
Q 016458          373 FWRVQEG  379 (389)
Q Consensus       373 ~W~~~~~  379 (389)
                       |....+
T Consensus       645 -W~~~~~  650 (764)
T KOG1063|consen  645 -WEEPDL  650 (764)
T ss_pred             -EeccCc
Confidence             999887

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.96  E-value=8.8e-28  Score=189.13  Aligned_cols=257  Identities=20%  Similarity=0.315  Sum_probs=196.7

Q ss_pred             ceeeeecccccCcEEEEEEcCCCC--eEEEEecCCcEEEEeCC----------------CCCeeEEEeeCCCcEEEEEEC
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSERN--RIVSASQDGRLIVWNAL----------------TSQKTHAIKLPCAWVMTCAFS  118 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~--~l~~~~~dg~v~iw~~~----------------~~~~~~~~~~~~~~v~~~~~~  118 (389)
                      ++......+|.+.++.+.-++-++  +.++-+..|.|+||++.                ..+++.++.+|...=+.++||
T Consensus       141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWS  220 (440)
T KOG0302|consen  141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWS  220 (440)
T ss_pred             ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecc
Confidence            444455667888899888888654  56667788999999973                235678888898888999999


Q ss_pred             CC-CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEe
Q 016458          119 PT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF  197 (389)
Q Consensus       119 ~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  197 (389)
                      |- ...|++|..-+.|++|...++.-.    .-...+.+|+..|-.++|+|.....|++|+.||+|+|||++.+.....+
T Consensus       221 p~~~g~LlsGDc~~~I~lw~~~~g~W~----vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~  296 (440)
T KOG0302|consen  221 PIKTGRLLSGDCVKGIHLWEPSTGSWK----VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV  296 (440)
T ss_pred             cccccccccCccccceEeeeeccCcee----ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence            93 345888888899999998874411    1233456799999999999998899999999999999999998433322


Q ss_pred             cCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCC--CcceeEEeeeccceEEEEEec-CCCEEEEEecCCeE
Q 016458          198 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA--SRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTC  274 (389)
Q Consensus       198 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i  274 (389)
                      ..   ..|.+.|+.+.|+. ...+|++|+.||+++|||+|..  .+++..+.-|..+|+++.|+| +...|++++.|..|
T Consensus       297 ~~---kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qi  372 (440)
T KOG0302|consen  297 ST---KAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQI  372 (440)
T ss_pred             Ee---eccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcE
Confidence            21   68999999999998 5559999999999999999974  367889999999999999999 45678889999999


Q ss_pred             EEEECCCCce----------------eeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEE
Q 016458          275 RLFDIRTGHQ----------------LQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWD  325 (389)
Q Consensus       275 ~i~d~~~~~~----------------~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d  325 (389)
                      .+||+.....                .+.+..+.+.   ..+..+.|++.-. ++++.+.|| +.||.
T Consensus       373 tiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ---ke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  373 TIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ---KEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             EEEEeeccCChhhhccccccchhcCCceeEEEecch---hHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            9999864322                1111121111   2367788888654 677777776 55553

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=1.3e-27  Score=202.10  Aligned_cols=257  Identities=22%  Similarity=0.340  Sum_probs=217.9

Q ss_pred             cccccCCCCCcccCCCc--ceeeeecccccCcEEE-EEEcC-CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEE
Q 016458           40 GYSRSQGRAPVSFGPTD--LVCCRTLQGHAGKVYS-LDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC  115 (389)
Q Consensus        40 ~~~~~~~~~~~~~~~~~--~~~~~~l~~h~~~v~~-~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~  115 (389)
                      ..+.++++....|.+..  ....+.+.+|.+-|.+ +++-+ ++-.+++|+.|++|.+|......+...+.+|...|.++
T Consensus        28 i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~l  107 (745)
T KOG0301|consen   28 IISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSL  107 (745)
T ss_pred             EeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeee
Confidence            34556666677787743  3444678899998888 88886 44579999999999999999999999999999999999


Q ss_pred             EECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEE
Q 016458          116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS  195 (389)
Q Consensus       116 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  195 (389)
                      ....++. +++|+.|.++++|....         +...+.+|...|+++...|.+  .+++|+.|.+|++|.-  ++.+.
T Consensus       108 s~~~~~~-~iSgSWD~TakvW~~~~---------l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~  173 (745)
T KOG0301|consen  108 SIGEDGT-LISGSWDSTAKVWRIGE---------LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLK  173 (745)
T ss_pred             ecCCcCc-eEecccccceEEecchh---------hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhh
Confidence            9887777 99999999999999876         566699999999999999975  7999999999999985  67788


Q ss_pred             EecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEE
Q 016458          196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR  275 (389)
Q Consensus       196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  275 (389)
                      ++     .+|.+.|+.+++.+ + ..|++++.||.|++|++.  +..+..+.+|++-+.+++..+++..+++++.|++++
T Consensus       174 tf-----~gHtD~VRgL~vl~-~-~~flScsNDg~Ir~w~~~--ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlr  244 (745)
T KOG0301|consen  174 TF-----SGHTDCVRGLAVLD-D-SHFLSCSNDGSIRLWDLD--GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLR  244 (745)
T ss_pred             hh-----ccchhheeeeEEec-C-CCeEeecCCceEEEEecc--CceeeeeeccceEEEEEEecCCCCeEEEecCCceEE
Confidence            88     79999999999996 3 357899999999999994  378899999999999999888889999999999999


Q ss_pred             EEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      +|+..  .+.+.+..+...     |.++.+-++|. +++|++||.|+||...
T Consensus       245 iW~~~--e~~q~I~lPtts-----iWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  245 IWKKD--ECVQVITLPTTS-----IWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EeecC--ceEEEEecCccc-----eEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            99976  566666554432     78888777775 5678899999999764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=1e-25  Score=190.10  Aligned_cols=279  Identities=13%  Similarity=0.096  Sum_probs=203.5

Q ss_pred             CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeE-EEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcE
Q 016458           45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS  123 (389)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  123 (389)
                      .+.....|++...+....+.+|.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|+++.
T Consensus         9 ~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~   86 (300)
T TIGR03866         9 KDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKI   86 (300)
T ss_pred             CCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCE
Confidence            345566778777777888877654 6789999999876 5677889999999999888776665443 577899999997


Q ss_pred             EEEe-cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC-eEEEEeCCCCeeEEEecCcc
Q 016458          124 VACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-TCVLWDITTGLRTSVFGGEF  201 (389)
Q Consensus       124 l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~  201 (389)
                      ++++ ..++.+++||+.+..       ....+. +...+.+++|+|++ .+++++..++ .+.+||..++.......   
T Consensus        87 l~~~~~~~~~l~~~d~~~~~-------~~~~~~-~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~~~---  154 (300)
T TIGR03866        87 LYIANEDDNLVTVIDIETRK-------VLAEIP-VGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDNVL---  154 (300)
T ss_pred             EEEEcCCCCeEEEEECCCCe-------EEeEee-CCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEEEE---
Confidence            7655 568999999998633       223332 22346789999998 5677766654 57788998877665541   


Q ss_pred             cCCCCCCeeEEEeeCCCCcEE-EEeeCCCceEEEeCCCCCcceeEEeeec-------cceEEEEEecCCCEEEEE-ecCC
Q 016458          202 QSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAVRTFHGHE-------GDVNTVKFFPDGNRFGTG-SDDG  272 (389)
Q Consensus       202 ~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~-~~dg  272 (389)
                         ....+.+++|+| ++..+ +++..++.|++||+++. +.+..+..+.       .....++|+|++++++++ +.++
T Consensus       155 ---~~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~  229 (300)
T TIGR03866       155 ---VDQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN  229 (300)
T ss_pred             ---cCCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence               223457789998 56655 55556999999999876 4444443221       123568899999986554 5567


Q ss_pred             eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE-ecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEE
Q 016458          273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  351 (389)
Q Consensus       273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  351 (389)
                      .+.+||+++++.........      .+.+++|+|+|++|+++ ..+|.|.+||+.+++.+..+.    . ....+.+++
T Consensus       230 ~i~v~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~----~-~~~~~~~~~  298 (300)
T TIGR03866       230 RVAVVDAKTYEVLDYLLVGQ------RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK----V-GRLPWGVVV  298 (300)
T ss_pred             eEEEEECCCCcEEEEEEeCC------CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE----c-ccccceeEe
Confidence            89999999887765543221      37899999999999886 468999999999999988883    3 345588887


Q ss_pred             CC
Q 016458          352 SA  353 (389)
Q Consensus       352 ~~  353 (389)
                      +|
T Consensus       299 ~~  300 (300)
T TIGR03866       299 RP  300 (300)
T ss_pred             CC
Confidence            65

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2.3e-29  Score=213.58  Aligned_cols=257  Identities=22%  Similarity=0.416  Sum_probs=222.8

Q ss_pred             CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccccc
Q 016458           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG  159 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  159 (389)
                      .+++....+-.+++|+...      +..|...+.++..-..++.+++|+.|..+.+|.+....       ....+.+|..
T Consensus         5 ~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~-------~i~S~~~hes   71 (825)
T KOG0267|consen    5 EFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN-------AITSLTGHES   71 (825)
T ss_pred             cccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-------hhheeeccCC
Confidence            3445555566677887543      34566677787776778899999999999999987644       3445899999


Q ss_pred             ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCC
Q 016458          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA  239 (389)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  239 (389)
                      +|.++.|++.. .++++|+.+|+|++||++..+.+..+     .+|...+.++.|+| -+.+++.|+.|+.+.+||++..
T Consensus        72 pIeSl~f~~~E-~LlaagsasgtiK~wDleeAk~vrtL-----tgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~  144 (825)
T KOG0267|consen   72 PIESLTFDTSE-RLLAAGSASGTIKVWDLEEAKIVRTL-----TGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKK  144 (825)
T ss_pred             cceeeecCcch-hhhcccccCCceeeeehhhhhhhhhh-----hccccCcceeeecc-ceEEeccccccccceehhhhcc
Confidence            99999999986 78999999999999999999988888     79999999999999 8889999999999999999976


Q ss_pred             CcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC
Q 016458          240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG  319 (389)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (389)
                       .+...+.+|...+..+.|+|+|+++++++.|..+++||+..|+....|..+...     +..+.|+|..-+++.|+.|+
T Consensus       145 -Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~-----v~sle~hp~e~Lla~Gs~d~  218 (825)
T KOG0267|consen  145 -GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGK-----VQSLEFHPLEVLLAPGSSDR  218 (825)
T ss_pred             -CceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccc-----ccccccCchhhhhccCCCCc
Confidence             688889999999999999999999999999999999999999999888765554     88899999999999999999


Q ss_pred             cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCe
Q 016458          320 DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN  366 (389)
Q Consensus       320 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  366 (389)
                      .+++||+++.+.+...    ......|.+.+|+|+++.+++|..+..
T Consensus       219 tv~f~dletfe~I~s~----~~~~~~v~~~~fn~~~~~~~~G~q~sl  261 (825)
T KOG0267|consen  219 TVRFWDLETFEVISSG----KPETDGVRSLAFNPDGKIVLSGEQISL  261 (825)
T ss_pred             eeeeeccceeEEeecc----CCccCCceeeeecCCceeeecCchhhh
Confidence            9999999999988887    566789999999999999888876543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1e-25  Score=190.21  Aligned_cols=290  Identities=19%  Similarity=0.273  Sum_probs=231.3

Q ss_pred             eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCe-eEEEeeC-CCcEEEEEECCCCcEEEEecCCCcEEE
Q 016458           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK-THAIKLP-CAWVMTCAFSPTGQSVACGGLDSVCSI  135 (389)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~v  135 (389)
                      ..++.+.--..+|.++||+.+.+.||.+-.||.|.+|++..+=. ...+.++ ...|.+++|+ ++..|++.+.+|.|.-
T Consensus        16 hrcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~E   94 (691)
T KOG2048|consen   16 HRCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITE   94 (691)
T ss_pred             EEEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEE
Confidence            33444555567899999999999999999999999999987543 3334443 4679999999 5556788888999999


Q ss_pred             EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (389)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  215 (389)
                      ||+.+.+       .........+.|++++.+|.+ ..++.|+.||.+..++...+........   ....+.+.+++|+
T Consensus        95 wDl~~lk-------~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l---~rq~sRvLslsw~  163 (691)
T KOG2048|consen   95 WDLHTLK-------QKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSL---MRQKSRVLSLSWN  163 (691)
T ss_pred             EecccCc-------eeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeec---ccccceEEEEEec
Confidence            9998755       566677778999999999997 6899999999888888877765544321   3456899999999


Q ss_pred             CCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-------e-eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeE
Q 016458          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-------G-HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV  287 (389)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  287 (389)
                      | .+..+++|+.||.|++||...+ ..+....       . ...-|.++.|-.+ ..|++|...|+|.+||...+..+..
T Consensus       164 ~-~~~~i~~Gs~Dg~Iriwd~~~~-~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS  240 (691)
T KOG2048|consen  164 P-TGTKIAGGSIDGVIRIWDVKSG-QTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQS  240 (691)
T ss_pred             C-CccEEEecccCceEEEEEcCCC-ceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhh
Confidence            9 8888999999999999999987 3333111       1 2224677777744 4799999999999999999999988


Q ss_pred             eeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCee
Q 016458          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL  367 (389)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  367 (389)
                      +..+...     |.+++..+++.++++++.|+.|.-|...+.+...........|...|.+++..++  .|++||.|..+
T Consensus       241 ~~~h~ad-----Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l  313 (691)
T KOG2048|consen  241 HSCHDAD-----VLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTL  313 (691)
T ss_pred             hhhhhcc-----eeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEE
Confidence            8776665     9999999999999999999999999887765433333333678889999999877  89999999999


Q ss_pred             EE
Q 016458          368 KV  369 (389)
Q Consensus       368 ~i  369 (389)
                      .+
T Consensus       314 ~i  315 (691)
T KOG2048|consen  314 AI  315 (691)
T ss_pred             EE
Confidence            87

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=1.4e-26  Score=195.94  Aligned_cols=321  Identities=17%  Similarity=0.237  Sum_probs=231.5

Q ss_pred             cccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCC---eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEE
Q 016458           40 GYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERN---RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA  116 (389)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~---~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~  116 (389)
                      .++.........++|........+.||.++|+|+.|-|..+   ++++|+.||.|.+|.++................+++
T Consensus        27 ~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~c  106 (764)
T KOG1063|consen   27 LVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVC  106 (764)
T ss_pred             eEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEE
Confidence            34555567777899999999999999999999999999887   899999999999999985544443333333456666


Q ss_pred             ECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccc--ccceEEEEEeeC-CCcEEEEeeCCCeEEEEeCCCC--
Q 016458          117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH--KGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTG--  191 (389)
Q Consensus       117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~--  191 (389)
                      ++.......+...|+.+.+|+.+...     ..+...+...  ..-..|+++.++ +.-+++.|+.+..|.++.-...  
T Consensus       107 v~a~~~~~~~~~ad~~v~vw~~~~~e-----~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f  181 (764)
T KOG1063|consen  107 VVARSSVMTCKAADGTVSVWDKQQDE-----VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSF  181 (764)
T ss_pred             EEeeeeEEEeeccCceEEEeecCCCc-----eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcce
Confidence            66555555555789999999994422     1122222211  223356666663 3344566777888888876544  


Q ss_pred             eeEEEecCcccCCCCCCeeEEEeeCCC--CcEEEEeeCCCceEEEeCCCCC--------------------ccee-----
Q 016458          192 LRTSVFGGEFQSGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVAS--------------------RAVR-----  244 (389)
Q Consensus       192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--------------------~~~~-----  244 (389)
                      .....+     .+|.+.|.+++|....  .-+|++++.|..|+||.+.-..                    ....     
T Consensus       182 ~~v~el-----~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~  256 (764)
T KOG1063|consen  182 ARVAEL-----EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYR  256 (764)
T ss_pred             eEEEEe-----eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEE
Confidence            344445     7999999999998643  3578899999999999765332                    0111     


Q ss_pred             -----EEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceee--EeeccCCCCCCCCeeEEEeCCCCCEEEEEec
Q 016458          245 -----TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ--VYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (389)
Q Consensus       245 -----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (389)
                           .+.+|+..|.++.|+|.+..|++++.|.++.+|...+..-+.  ..................|+|+++.+++-+.
T Consensus       257 is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~  336 (764)
T KOG1063|consen  257 ISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR  336 (764)
T ss_pred             EehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc
Confidence                 123899999999999999999999999999999876653332  2222222222334788999999999999999


Q ss_pred             CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEee
Q 016458          318 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNL  371 (389)
Q Consensus       318 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~  371 (389)
                      .|..++|..... ..........+|...|++++|+|.|.+|+++|.|.+-|+|.
T Consensus       337 ~Gg~hlWkt~d~-~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa  389 (764)
T KOG1063|consen  337 TGGFHLWKTKDK-TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFA  389 (764)
T ss_pred             cCcEEEEeccCc-cceeeccccccccccceeeeecCCCCEEEEeccccceeeec
Confidence            999999983332 22222222389999999999999999999999999999943

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.7e-27  Score=191.26  Aligned_cols=248  Identities=16%  Similarity=0.235  Sum_probs=196.1

Q ss_pred             EEEEEEcC-------CCCeEEEEecCCcEEEEeCCCCC---e------------------eEEEeeCCCcEEEEEECCC-
Q 016458           70 VYSLDWTS-------ERNRIVSASQDGRLIVWNALTSQ---K------------------THAIKLPCAWVMTCAFSPT-  120 (389)
Q Consensus        70 v~~~~~~~-------~~~~l~~~~~dg~v~iw~~~~~~---~------------------~~~~~~~~~~v~~~~~~~~-  120 (389)
                      ..|++|..       .|+++|.|+.|..|.|||+.-..   +                  -....+|...|.+++|+.. 
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~  255 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF  255 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence            35677754       25799999999999999974211   1                  1112357777888888774 


Q ss_pred             CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc
Q 016458          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE  200 (389)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  200 (389)
                      .+.||+|+.|.+|++||+.+++       +..++..|.+.|.++.|+|..+..|++|+.|++|.+.|.+........   
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g~-------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~---  325 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTGK-------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE---  325 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCCC-------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce---
Confidence            5678999999999999999877       677788899999999999999999999999999999999853322221   


Q ss_pred             ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEEC
Q 016458          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDI  279 (389)
Q Consensus       201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~  279 (389)
                        -...+.|-.++|.|...+.+++++.||.|+-+|+|..++++.++.+|.++|.++++++ ...++++++.|+.|++|++
T Consensus       326 --wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~  403 (463)
T KOG0270|consen  326 --WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKF  403 (463)
T ss_pred             --EEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEee
Confidence              2456789999999988999999999999999999999999999999999999999998 4557899999999999998


Q ss_pred             CCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccceEE
Q 016458          280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVV  332 (389)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~  332 (389)
                      ..............   .....|+++.|+-. .++.|+..+.++|||+.+...+
T Consensus       404 ~~~~~~~v~~~~~~---~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  404 DVDSPKSVKEHSFK---LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             cCCCCccccccccc---ccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            76554333222111   11256777778755 6777888888999998876554

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=6.3e-29  Score=210.96  Aligned_cols=239  Identities=22%  Similarity=0.396  Sum_probs=216.7

Q ss_pred             eecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458           61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS  140 (389)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~  140 (389)
                      +.+..|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|++...+|++|+.+|+|++||++.
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee  101 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE  101 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence            45667999999999977888999999999999999988888888999999999999999999999999999999999997


Q ss_pred             CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (389)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (389)
                      ..       ..+++.+|...+..+.|+|-+ .++++|+.|+.+++||++...+...+     .+|...+..+.|+| ++.
T Consensus       102 Ak-------~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~-----~s~~~vv~~l~lsP-~Gr  167 (825)
T KOG0267|consen  102 AK-------IVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTY-----KSHTRVVDVLRLSP-DGR  167 (825)
T ss_pred             hh-------hhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeee-----cCCcceeEEEeecC-CCc
Confidence            55       667899999999999999998 68899999999999999988888888     67999999999999 999


Q ss_pred             EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe
Q 016458          221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV  300 (389)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i  300 (389)
                      +++.++.|..+++||...+ +....|..|.+.+..+.|+|..-++++|+.|+++++||+++...+......     ...|
T Consensus       168 ~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~-----~~~v  241 (825)
T KOG0267|consen  168 WVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE-----TDGV  241 (825)
T ss_pred             eeeccCCcceeeeeccccc-ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc-----cCCc
Confidence            9999999999999999887 888899999999999999999999999999999999999987666655443     3359


Q ss_pred             eEEEeCCCCCEEEEEecCC
Q 016458          301 TSIAFSISGRLLFAGYSNG  319 (389)
Q Consensus       301 ~~~~~~~~~~~l~~~~~dg  319 (389)
                      .+..|+|++..+++|....
T Consensus       242 ~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  242 RSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eeeeecCCceeeecCchhh
Confidence            9999999999999887653

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=1.5e-27  Score=194.66  Aligned_cols=250  Identities=24%  Similarity=0.389  Sum_probs=205.6

Q ss_pred             eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeec--ccccceEEEEEeeCCCcEEEEeeCCCeEE
Q 016458          107 LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS--GHKGYVSCCQYVPDEDTHLITSSGDQTCV  184 (389)
Q Consensus       107 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  184 (389)
                      .|.+-|.++.++...+.+++|+ .|.|+|||+.....+.    ....+.  .....|.++...|+| +.|++|+.-.++.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~----PvsqLdcl~rdnyiRSckL~pdg-rtLivGGeastls  490 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKS----PVSQLDCLNRDNYIRSCKLLPDG-RTLIVGGEASTLS  490 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCC----ccccccccCcccceeeeEecCCC-ceEEeccccceee
Confidence            3556677788998999999987 5789999998754221    122221  235678999999998 6799999999999


Q ss_pred             EEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCE
Q 016458          185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR  264 (389)
Q Consensus       185 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  264 (389)
                      |||+...........   ......+.+++.+| +.++.+++..||.|.|||+.+. ..++.+.+|...+.||..+++|..
T Consensus       491 iWDLAapTprikael---tssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~dGtk  565 (705)
T KOG0639|consen  491 IWDLAAPTPRIKAEL---TSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISKDGTK  565 (705)
T ss_pred             eeeccCCCcchhhhc---CCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecCCCce
Confidence            999987654333211   23335678899999 8899999999999999999987 889999999999999999999999


Q ss_pred             EEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCC
Q 016458          265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG  344 (389)
Q Consensus       265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (389)
                      |.+|+-|++|+.||+++++.+.......      .|.++..+|.+.+|++|-.++.+.|...... ....+    ..|++
T Consensus       566 lWTGGlDntvRcWDlregrqlqqhdF~S------QIfSLg~cP~~dWlavGMens~vevlh~skp-~kyql----hlheS  634 (705)
T KOG0639|consen  566 LWTGGLDNTVRCWDLREGRQLQQHDFSS------QIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQL----HLHES  634 (705)
T ss_pred             eecCCCccceeehhhhhhhhhhhhhhhh------hheecccCCCccceeeecccCcEEEEecCCc-cceee----ccccc
Confidence            9999999999999999998776654432      4899999999999999999999999886543 33445    68999


Q ss_pred             CeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          345 RITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       345 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      .|.++.|.+.|+++++.+.|+.+..    |...-|.-+
T Consensus       635 cVLSlKFa~cGkwfvStGkDnlLna----wrtPyGasi  668 (705)
T KOG0639|consen  635 CVLSLKFAYCGKWFVSTGKDNLLNA----WRTPYGASI  668 (705)
T ss_pred             EEEEEEecccCceeeecCchhhhhh----ccCccccce
Confidence            9999999999999999999999999    999877544

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=3.1e-26  Score=174.91  Aligned_cols=219  Identities=25%  Similarity=0.353  Sum_probs=177.0

Q ss_pred             eeCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcc--------eeeecccccceEEEEEeeCCCcEEEE
Q 016458          106 KLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPV--------SRMLSGHKGYVSCCQYVPDEDTHLIT  176 (389)
Q Consensus       106 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~l~~  176 (389)
                      ..|.+.|+++...+ .|+++++|+.||.|.+||++...........        ..-..+|+-.|.++.|-|-...+|.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            34667888888877 7899999999999999999875522211111        11234688899999999987789999


Q ss_pred             eeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC--CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceE
Q 016458          177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVN  254 (389)
Q Consensus       177 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~  254 (389)
                      ++.|.++++||..+.+....|      ..++.|.+-+++|-.  ..++++|..+-.|++.|+.++ .....+.+|...|.
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr~~vl  192 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDF------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHRDGVL  192 (397)
T ss_pred             ccccceEEEeecccceeeEEe------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeeccccCceE
Confidence            999999999999999888887      456778888888733  457888999999999999998 88899999999999


Q ss_pred             EEEEecCCCE-EEEEecCCeEEEEECCCC-ceeeEeeccC---------CCCCCCCeeEEEeCCCCCEEEEEecCCcEEE
Q 016458          255 TVKFFPDGNR-FGTGSDDGTCRLFDIRTG-HQLQVYYQQH---------GENEIPHVTSIAFSISGRLLFAGYSNGDCYV  323 (389)
Q Consensus       255 ~~~~~~~~~~-l~~~~~dg~i~i~d~~~~-~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (389)
                      ++.|+|...+ |++|+.||.|++||++.. .+...+..+.         ...+.+.+..++|+.++.++++.+.|..+++
T Consensus       193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~  272 (397)
T KOG4283|consen  193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV  272 (397)
T ss_pred             EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence            9999997665 689999999999999875 3444333322         2345567999999999999999999999999


Q ss_pred             EEcccceE
Q 016458          324 WDTLLAKV  331 (389)
Q Consensus       324 ~d~~~~~~  331 (389)
                      |+..+|+.
T Consensus       273 wn~~~G~n  280 (397)
T KOG4283|consen  273 WNMESGRN  280 (397)
T ss_pred             eecccCcc
Confidence            99987654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.95  E-value=1.5e-25  Score=173.26  Aligned_cols=286  Identities=19%  Similarity=0.275  Sum_probs=210.6

Q ss_pred             EEEEEEcCCCCeEEEEecCCcEEEEeCCCC------------CeeEEEe-eCCCcEEEEEEC-------CCCcEEEEecC
Q 016458           70 VYSLDWTSERNRIVSASQDGRLIVWNALTS------------QKTHAIK-LPCAWVMTCAFS-------PTGQSVACGGL  129 (389)
Q Consensus        70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~------------~~~~~~~-~~~~~v~~~~~~-------~~~~~l~~~~~  129 (389)
                      ...+.|+|||..|++-+.|..+.+|++...            +....++ .....|...+|-       |+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            456889999999999999999999987321            1111222 123457777774       67789999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCcceeeeccccc---ceEEEEEeeCCCcEEEEeeCCCeEEEEeC-CCCeeEEEecCc--ccC
Q 016458          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKG---YVSCCQYVPDEDTHLITSSGDQTCVLWDI-TTGLRTSVFGGE--FQS  203 (389)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~--~~~  203 (389)
                      +.-|++||.-+++.+     .......|..   ...+++|+||| .+|++ +....|+++|+ +.|..-......  ...
T Consensus       132 ~~PIh~wdaftG~lr-----aSy~~ydh~de~taAhsL~Fs~DG-eqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~  204 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLR-----ASYRAYDHQDEYTAAHSLQFSPDG-EQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKF  204 (406)
T ss_pred             cCceeeeeccccccc-----cchhhhhhHHhhhhheeEEecCCC-CeEee-cccceEEEeeccCCCCCCcchhhhhcccc
Confidence            999999999886622     2222333433   34689999998 45554 55688999999 444322222111  113


Q ss_pred             CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCC
Q 016458          204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTG  282 (389)
Q Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~  282 (389)
                      +..+-+.+++++|.+...+++|+....+-||.-... .++..+.+|.+.|+.++|.++|+.|++|. .|-.|.+||++..
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence            456778999999988889999999999999987766 78888899999999999999999999998 4778999999975


Q ss_pred             ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc-ceEEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  361 (389)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  361 (389)
                      +.+..-...+... ...-.-....|++++|++|+.||.|++||++. +..+..+    ..+...++.++++|--.+++++
T Consensus       284 ~~pv~~L~rhv~~-TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~----~~~sd~vNgvslnP~mpilats  358 (406)
T KOG2919|consen  284 RDPVYALERHVGD-TNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT----GNYSDTVNGVSLNPIMPILATS  358 (406)
T ss_pred             cchhhhhhhhccC-ccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc----ccccccccceecCcccceeeec
Confidence            5433222222111 11233456678999999999999999999988 6666666    6888999999999998888888


Q ss_pred             eCCCeeE
Q 016458          362 SWDTNLK  368 (389)
Q Consensus       362 ~~dg~i~  368 (389)
                      +......
T Consensus       359 sGqr~f~  365 (406)
T KOG2919|consen  359 SGQRIFK  365 (406)
T ss_pred             cCceeec
Confidence            7554433

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=2.1e-26  Score=185.71  Aligned_cols=275  Identities=19%  Similarity=0.190  Sum_probs=207.5

Q ss_pred             eCCCCCeeEEEeeCCCcEEEEEECCCC--cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCc
Q 016458           95 NALTSQKTHAIKLPCAWVMTCAFSPTG--QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT  172 (389)
Q Consensus        95 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  172 (389)
                      |+.+-.....+..+.++|++++|+|..  +++|+|...|.|-+||+....   ....-...+..|..+|.++.|+|.+..
T Consensus       172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~---~d~d~v~~f~~hs~~Vs~l~F~P~n~s  248 (498)
T KOG4328|consen  172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE---KDKDGVYLFTPHSGPVSGLKFSPANTS  248 (498)
T ss_pred             ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC---CccCceEEeccCCccccceEecCCChh
Confidence            333444555667788999999999954  588999999999999996322   223345667889999999999999989


Q ss_pred             EEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccc
Q 016458          173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD  252 (389)
Q Consensus       173 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  252 (389)
                      .+++.+.||+|+.-|++.+.....+..   ......+.++.++. +...++.+..=|...+||.++.+.....+.-|...
T Consensus       249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~---~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK  324 (498)
T KOG4328|consen  249 QIYSSSYDGTIRLQDFEGNISEEVLSL---DTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK  324 (498)
T ss_pred             heeeeccCceeeeeeecchhhHHHhhc---CccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence            999999999999999998755444421   12445577788887 44555566666699999999997778888889999


Q ss_pred             eEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc----
Q 016458          253 VNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL----  327 (389)
Q Consensus       253 i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~----  327 (389)
                      |.+++++| ...+|++++.|++.+|||++....... .......|...|.+..|||++-.|++.+.|..|+|||..    
T Consensus       325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa  403 (498)
T KOG4328|consen  325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA  403 (498)
T ss_pred             cceeecCCCCchheeecccCcceeeeehhhhcCCCC-cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccc
Confidence            99999999 556789999999999999987544332 011123444569999999998889999999999999983    


Q ss_pred             cceEEEeecCcCCCCC--CCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          328 LAKVVLNLGSLQNSHE--GRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       328 ~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      ...+..++..- ..+.  -......|.|+..++++|-.-..|-|    +|-+.|+++
T Consensus       404 ~~~p~~~I~Hn-~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv----~~~~~~q~v  455 (498)
T KOG4328|consen  404 KDEPLGTIPHN-NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDV----FDGNGGQMV  455 (498)
T ss_pred             cCCccceeecc-CcccccccchhheeCCCccEEEEeccCcceeE----EcCCCCEEe
Confidence            33344443210 1111  12345689999999999999999999    998888743

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.3e-27  Score=204.48  Aligned_cols=232  Identities=21%  Similarity=0.297  Sum_probs=194.2

Q ss_pred             CCCCCcccCCCc---ceeeeecccccCcEEEEEEcCC-CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECC-
Q 016458           45 QGRAPVSFGPTD---LVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP-  119 (389)
Q Consensus        45 ~~~~~~~~~~~~---~~~~~~l~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~-  119 (389)
                      ..+....|+...   -+.+..|..|+..|++++|++. .++|++|+.||+|++||++......++....+.|..++|+| 
T Consensus       108 ~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~  187 (839)
T KOG0269|consen  108 TNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPG  187 (839)
T ss_pred             CCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccC
Confidence            345566777665   5566689999999999999984 46899999999999999999999988988889999999999 


Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC
Q 016458          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG  199 (389)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  199 (389)
                      .+..++++...|.+++||++.+.      .....+..|.++|.|+.|+|++ .+|++||.|+.|+|||..++....... 
T Consensus       188 ~~~~F~s~~dsG~lqlWDlRqp~------r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~~~t-  259 (839)
T KOG0269|consen  188 YGNKFASIHDSGYLQLWDLRQPD------RCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKPKHT-  259 (839)
T ss_pred             CCceEEEecCCceEEEeeccCch------hHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccceeE-
Confidence            67889999999999999999854      2566788999999999999975 899999999999999998754333221 


Q ss_pred             cccCCCCCCeeEEEeeCCCCcEEEEeeC--CCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEE
Q 016458          200 EFQSGHTADVLSVSISGSNSRMFVSGSC--DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRL  276 (389)
Q Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i  276 (389)
                         .....++.++.|-|.....|++++.  |-.|++||++.+.-+...+..|...++.++|.. |...+.+++.||.|..
T Consensus       260 ---InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q  336 (839)
T KOG0269|consen  260 ---INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ  336 (839)
T ss_pred             ---EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence               2455789999999988888888764  779999999998888999999999999999976 5567889999999877


Q ss_pred             EECCCCceeeE
Q 016458          277 FDIRTGHQLQV  287 (389)
Q Consensus       277 ~d~~~~~~~~~  287 (389)
                      -.+++......
T Consensus       337 h~~knat~pid  347 (839)
T KOG0269|consen  337 HLFKNATTPID  347 (839)
T ss_pred             hhhhcccChhh
Confidence            76666544433

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.1e-25  Score=179.44  Aligned_cols=291  Identities=23%  Similarity=0.314  Sum_probs=212.6

Q ss_pred             EEEEcCCCCeEEEEecCC---c--EEEEeCCCCCeeEEEeeCC----CcEEEEEECC-------CCcEEEEecCCCcEEE
Q 016458           72 SLDWTSERNRIVSASQDG---R--LIVWNALTSQKTHAIKLPC----AWVMTCAFSP-------TGQSVACGGLDSVCSI  135 (389)
Q Consensus        72 ~~~~~~~~~~l~~~~~dg---~--v~iw~~~~~~~~~~~~~~~----~~v~~~~~~~-------~~~~l~~~~~dg~i~v  135 (389)
                      .+..-|..+++++|-.+.   .  |+||+-...   ..+..|.    ....|++|..       .|+++|.|+.|..|.|
T Consensus       130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~---nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI  206 (463)
T KOG0270|consen  130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE---NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI  206 (463)
T ss_pred             cceeccCCcEEEEeeccCCceEEEEEEEcCCCc---ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence            455667666777665432   2  455553321   1122222    3446777743       3689999999999999


Q ss_pred             EeCCCCCCCCCC--------------CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc
Q 016458          136 FNLNSPTDKDGN--------------LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (389)
Q Consensus       136 w~~~~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  201 (389)
                      ||+.-.......              ........+|+..|.++.|+..-.+.|++|+.|.+|++||+.++++...+    
T Consensus       207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~----  282 (463)
T KOG0270|consen  207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI----  282 (463)
T ss_pred             eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh----
Confidence            998853211000              00112234789999999999888889999999999999999999999998    


Q ss_pred             cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECC
Q 016458          202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIR  280 (389)
Q Consensus       202 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~  280 (389)
                       ..|...|.++.|+|....+|++|+.|+++.+.|.|.....-..++ ..+.|-.++|.| ....++++..||+|+-+|+|
T Consensus       283 -~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R  360 (463)
T KOG0270|consen  283 -THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR  360 (463)
T ss_pred             -hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence             679999999999999999999999999999999997533333333 567899999999 45577888899999999999


Q ss_pred             CC-ceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC-Ce
Q 016458          281 TG-HQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG-SA  357 (389)
Q Consensus       281 ~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~  357 (389)
                      .. +++..+..+..     +|+++++++.-. ++++++.|+.|.+|++....+......  ...-+...|+++.|+- -.
T Consensus       361 ~~~~~vwt~~AHd~-----~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~--~~~~~rl~c~~~~~~~a~~  433 (463)
T KOG0270|consen  361 NPGKPVWTLKAHDD-----EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH--SFKLGRLHCFALDPDVAFT  433 (463)
T ss_pred             CCCCceeEEEeccC-----CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc--cccccceeecccCCCcceE
Confidence            86 66666665554     499999998654 788899999999999875443222110  1122346777888854 46


Q ss_pred             EEeeeCCCeeEEeecceecccCccc
Q 016458          358 LCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       358 l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      ++.||..+.++|    ||+.++...
T Consensus       434 la~GG~k~~~~v----wd~~~~~~V  454 (463)
T KOG0270|consen  434 LAFGGEKAVLRV----WDIFTNSPV  454 (463)
T ss_pred             EEecCccceEEE----eecccChhH
Confidence            778888888999    999887654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.5e-26  Score=175.57  Aligned_cols=248  Identities=20%  Similarity=0.265  Sum_probs=194.6

Q ss_pred             EEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC
Q 016458          112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG  191 (389)
Q Consensus       112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  191 (389)
                      ..|+.|++.|.+||+|+.||.|.|||+.+..       ..+.+.+|..+|++++|+++| +.|++++.|..|.+||+..|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-------iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~g   97 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-------IARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKG   97 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc-------hhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCC
Confidence            7899999999999999999999999999854       677889999999999999998 78999999999999999999


Q ss_pred             eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee---eccceEEEEEecCCCEEEEE
Q 016458          192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---HEGDVNTVKFFPDGNRFGTG  268 (389)
Q Consensus       192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~  268 (389)
                      .+...+      ...++|..+.|+|.+.+.+++.-.+..-.+.++..+...+.....   -+....+..|.+.|+++++|
T Consensus        98 s~l~ri------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG  171 (405)
T KOG1273|consen   98 SPLKRI------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITG  171 (405)
T ss_pred             CceeEE------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEe
Confidence            988887      577899999999988887777766666666666643111111110   01122344688999999999


Q ss_pred             ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE---------EeecCcC
Q 016458          269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV---------LNLGSLQ  339 (389)
Q Consensus       269 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------~~~~~~~  339 (389)
                      ...|.+.++|..+.+++..+....    ...|..+.++..|++|+.-+.|..|+.|+++.-...         ..+..  
T Consensus       172 tsKGkllv~~a~t~e~vas~rits----~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD--  245 (405)
T KOG1273|consen  172 TSKGKLLVYDAETLECVASFRITS----VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD--  245 (405)
T ss_pred             cCcceEEEEecchheeeeeeeech----heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH--
Confidence            999999999999998888776644    124899999999999999999999999997631111         11100  


Q ss_pred             CCCCCCeeEEEECCCCCeEEeeeCC-CeeEEeecceecccCcccC
Q 016458          340 NSHEGRITCLGLSADGSALCTGSWD-TNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       340 ~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~~~~W~~~~~~~~~  383 (389)
                      ......-.+++|+.+|.|+++++.. ..++|    |.-..|.++.
T Consensus       246 vVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYI----WE~~~GsLVK  286 (405)
T KOG1273|consen  246 VVNKLQWKKCCFSGDGEYVCAGSARAHALYI----WEKSIGSLVK  286 (405)
T ss_pred             HHhhhhhhheeecCCccEEEeccccceeEEE----EecCCcceee
Confidence            0112244678999999999888753 56888    9999998875

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=1.2e-25  Score=177.20  Aligned_cols=253  Identities=21%  Similarity=0.297  Sum_probs=189.3

Q ss_pred             eCCCcEEEEEECCCC--cEEEEecCCCcEEEEeCCCCC---------CCCCCCcceeeecccccceEEEEEeeCCCcEEE
Q 016458          107 LPCAWVMTCAFSPTG--QSVACGGLDSVCSIFNLNSPT---------DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI  175 (389)
Q Consensus       107 ~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  175 (389)
                      .|.+.++.+.-++-+  .+.++-+..|.|+||++....         ..........++.+|.+.=..++|+|-....++
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            345567777666644  455666789999999987532         122344567788899999999999996555689


Q ss_pred             EeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC-cceeEEeeeccceE
Q 016458          176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVN  254 (389)
Q Consensus       176 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~  254 (389)
                      +|..-+.|++|...++.-..--  ....+|...|..++|+|....+|++|+.||+|+|||+|... +.....++|.+.|+
T Consensus       229 sGDc~~~I~lw~~~~g~W~vd~--~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN  306 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGSWKVDQ--RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN  306 (440)
T ss_pred             cCccccceEeeeeccCceeecC--ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence            9999999999999886543221  11256999999999999999999999999999999999873 34445588999999


Q ss_pred             EEEEecCCCEEEEEecCCeEEEEECCCC---ceeeEeeccCCCCCCCCeeEEEeCCCC-CEEEEEecCCcEEEEEcccce
Q 016458          255 TVKFFPDGNRFGTGSDDGTCRLFDIRTG---HQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAK  330 (389)
Q Consensus       255 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~  330 (389)
                      .|.|+....+|++|+.||+++|||++..   +++..+..+..     +|+++.|+|.. ..|++++.|.+|.+||+....
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~-----pItsieW~p~e~s~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA-----PITSIEWHPHEDSVIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC-----CeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence            9999998889999999999999999874   45555655444     59999999954 578888999999999985321


Q ss_pred             E--------EEe---ec-CcCCCC--CCCeeEEEECCC-CCeEEeeeCCCe
Q 016458          331 V--------VLN---LG-SLQNSH--EGRITCLGLSAD-GSALCTGSWDTN  366 (389)
Q Consensus       331 ~--------~~~---~~-~~~~~~--~~~v~~~~~~~~-~~~l~~~~~dg~  366 (389)
                      -        ...   +. .+...|  ...+..+.|++. ..+|++.+.||.
T Consensus       382 D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  382 DEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             ChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence            1        000   00 000123  346888999983 447888888874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.95  E-value=2e-25  Score=177.52  Aligned_cols=294  Identities=21%  Similarity=0.297  Sum_probs=215.8

Q ss_pred             cCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCC---------eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458           67 AGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQ---------KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (389)
Q Consensus        67 ~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (389)
                      ..+|..+.|.++.. .||||+.|..|++|.+..+.         ....+..|...|+++.|+|+|..|++|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            45899999999766 99999999999999775432         234556788999999999999999999999999999


Q ss_pred             eCCCCC---------CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458          137 NLNSPT---------DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (389)
Q Consensus       137 ~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  207 (389)
                      ....-.         .....+.....+.+|...|..++|+|++ .++++++.|..+++||+..+.....+     ..|..
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~-----~dh~~  166 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAIL-----DDHEH  166 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeec-----ccccc
Confidence            877211         0122355667788999999999999997 79999999999999999999999998     79999


Q ss_pred             CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-------------------eecc----ceEEEEEecCCCE
Q 016458          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-------------------GHEG----DVNTVKFFPDGNR  264 (389)
Q Consensus       208 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------~~~~----~i~~~~~~~~~~~  264 (389)
                      .+..++|.| .++++++-+.|...+.+++... +.+....                   -|..    -...++|+|+|.+
T Consensus       167 yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~-~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l  244 (434)
T KOG1009|consen  167 YVQGVAWDP-LNQYVASKSSDRHPEGFSAKLK-QVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL  244 (434)
T ss_pred             ccceeecch-hhhhhhhhccCcccceeeeeee-eeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence            999999999 7888888888887777766533 1111100                   0211    2456899999999


Q ss_pred             EEEEec----CC-----eEEEEECCCCce-eeEeeccCCCCCCCCeeEEEeCC------------------CCCEEEEEe
Q 016458          265 FGTGSD----DG-----TCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSI------------------SGRLLFAGY  316 (389)
Q Consensus       265 l~~~~~----dg-----~i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~------------------~~~~l~~~~  316 (389)
                      +++...    .+     ..++|+-...+. ...+...     ..+...+.|+|                  -+-.+++++
T Consensus       245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~-----~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt  319 (434)
T KOG1009|consen  245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP-----KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT  319 (434)
T ss_pred             EEcccceeeeCCceeeceeEeeccccccCceeecCCC-----CcceEEEEeeeeEEEeccccccccccccccceEEEEee
Confidence            987642    22     234454332211 1111111     11233333332                  223455555


Q ss_pred             cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcc
Q 016458          317 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~  381 (389)
                      . +.|+|||.++..++....   .-|-..|+.++|++||..|+..+.||...+    -.++..++
T Consensus       320 ~-~svyvydtq~~~P~~~v~---nihy~~iTDiaws~dg~~l~vSS~DGyCS~----vtfe~~el  376 (434)
T KOG1009|consen  320 K-NSVYVYDTQTLEPLAVVD---NIHYSAITDIAWSDDGSVLLVSSTDGFCSL----VTFEPWEL  376 (434)
T ss_pred             c-ceEEEeccccccceEEEe---eeeeeeecceeecCCCcEEEEeccCCceEE----EEEcchhc
Confidence            4 489999999988888776   678899999999999999999999998876    55554443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2e-25  Score=172.28  Aligned_cols=270  Identities=18%  Similarity=0.270  Sum_probs=194.1

Q ss_pred             EEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe
Q 016458          103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT  182 (389)
Q Consensus       103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  182 (389)
                      ..+++|...|++++|+.||++|++++.|+.|++|+++.-..+..........   -+..+.+.|.||-...+++.-...+
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve---~dhpT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE---YDHPTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc---CCCceEEEECCCcceEEEEEccCCE
Confidence            3567899999999999999999999999999999998743221111111111   2245778999998777888888889


Q ss_pred             EEEEeCCCCee---EEEe----cCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEE
Q 016458          183 CVLWDITTGLR---TSVF----GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT  255 (389)
Q Consensus       183 i~iwd~~~~~~---~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~  255 (389)
                      +++|.+...+.   ...+    ..++...|...+..+-... +..+|++++.|..|.+|+++  ++.+..+......-+.
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk--Gq~L~~idtnq~~n~~  233 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK--GQLLQSIDTNQSSNYD  233 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC--Cceeeeeccccccccc
Confidence            99997654321   1111    1123356677777777775 88999999999999999999  4788888877777888


Q ss_pred             EEEecCCCEEEEEecCCeEEEEECCC---CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc----
Q 016458          256 VKFFPDGNRFGTGSDDGTCRLFDIRT---GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL----  328 (389)
Q Consensus       256 ~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----  328 (389)
                      .+.||+|+++++++..-.|++|.+--   |.............|...|..++|+++...+++.+.||.++|||++-    
T Consensus       234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~  313 (420)
T KOG2096|consen  234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA  313 (420)
T ss_pred             eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence            99999999999999999999998632   22222222222245566799999999999999999999999999752    


Q ss_pred             ce---EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          329 AK---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       329 ~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      ++   .+.+.......-.+....++.+|+|+.|+.+. ...+++    +..++|+..+
T Consensus       314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~----~~se~g~~~~  366 (420)
T KOG2096|consen  314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKV----FASEDGKDYP  366 (420)
T ss_pred             CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEE----EEcccCccch
Confidence            22   22222111122333445899999999887655 456888    8877776543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=7.7e-27  Score=208.29  Aligned_cols=291  Identities=16%  Similarity=0.279  Sum_probs=223.5

Q ss_pred             EEEEcCCCC-eEEEEe----------cCCcEEEEeCC--CCC----eeEEEeeCCCcEEEEEECCCCcE----EEEecCC
Q 016458           72 SLDWTSERN-RIVSAS----------QDGRLIVWNAL--TSQ----KTHAIKLPCAWVMTCAFSPTGQS----VACGGLD  130 (389)
Q Consensus        72 ~~~~~~~~~-~l~~~~----------~dg~v~iw~~~--~~~----~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~d  130 (389)
                      .++|+|++. ++++|.          .+.++-||.+.  +..    .+..+. .....+.++|.+.+..    |+.|..|
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence            578888876 555542          34566666543  222    222222 2356889999997766    8889999


Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  210 (389)
                      |.|.+||...- ..............|.+.|..+.|++..++++++|+.||.|.|||+.+.+......   .....+.|.
T Consensus        90 G~I~ly~p~~~-~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~  165 (1049)
T KOG0307|consen   90 GNIVLYDPASI-IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEIK  165 (1049)
T ss_pred             CceEEecchhh-ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccce
Confidence            99999998863 12344556778889999999999999988899999999999999998865544442   134567899


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeecc--ceEEEEEecCC-CEEEEEecCC---eEEEEECCCCce
Q 016458          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG--DVNTVKFFPDG-NRFGTGSDDG---TCRLFDIRTGHQ  284 (389)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~  284 (389)
                      +++|+....+.|++++.+|.+.|||+|.. +++..+..+.+  .+..++|+|+. ..|++++.|.   .|.+||+|....
T Consensus       166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass  244 (1049)
T KOG0307|consen  166 CLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS  244 (1049)
T ss_pred             EeccchhhhHHhhccCCCCCceeccccCC-CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence            99999888899999999999999999987 66666655544  47789999965 3566666543   599999987554


Q ss_pred             eeEeeccCCCCCCCCeeEEEeCCCC-CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC-CeEEeee
Q 016458          285 LQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG-SALCTGS  362 (389)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~  362 (389)
                      .......    |...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+    ......+..+.|+|.. ..++.++
T Consensus       245 P~k~~~~----H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~----p~~~nW~fdv~w~pr~P~~~A~as  316 (1049)
T KOG0307|consen  245 PLKILEG----HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL----PAQGNWCFDVQWCPRNPSVMAAAS  316 (1049)
T ss_pred             chhhhcc----cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec----CCCCcceeeeeecCCCcchhhhhe
Confidence            4333322    23359999999976 79999999999999999999999999    5677889999999954 4888899


Q ss_pred             CCCeeEEeecceecccCc
Q 016458          363 WDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       363 ~dg~i~i~~~~W~~~~~~  380 (389)
                      -||.|.|    +.+..+.
T Consensus       317 fdgkI~I----~sl~~~~  330 (1049)
T KOG0307|consen  317 FDGKISI----YSLQGTD  330 (1049)
T ss_pred             eccceee----eeeecCC
Confidence            9999999    8888664

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.95  E-value=4.5e-26  Score=171.26  Aligned_cols=294  Identities=14%  Similarity=0.211  Sum_probs=212.6

Q ss_pred             eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe-eCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (389)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (389)
                      .+...|++|.+.|+++.|..++ +|.+|..-|.|.+|++.+.+....+. .+...|+.+.--|+ ..+.+-+.|+.+.+|
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw   82 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW   82 (323)
T ss_pred             CCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence            4456777999999999998876 59999999999999999999888888 56678889988887 567888899999999


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC-e-----------EEEEeCCCCeeEEEecCcccCC
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-T-----------CVLWDITTGLRTSVFGGEFQSG  204 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~-----------i~iwd~~~~~~~~~~~~~~~~~  204 (389)
                      ++...          .....|.-.++++.|.+..   +...+... .           +.+-|......+... ......
T Consensus        83 ~ia~s----------~~i~i~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~-dd~~~~  148 (323)
T KOG0322|consen   83 TIAYS----------AFISIHSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIA-DDSERS  148 (323)
T ss_pred             EccCc----------ceEEEeeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEcc-Cchhcc
Confidence            99852          2333455556666665532   22222111 1           222222222222221 111234


Q ss_pred             CCCCeeEEEeeCC--CCcEEEEeeCCCceEEEeCCCCCc---------ceeEEeeeccceEEEEEecCCCEEEEEecCCe
Q 016458          205 HTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASR---------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  273 (389)
Q Consensus       205 ~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  273 (389)
                      ..+.+++..+.-.  ..-++++|.++|.+.+||+..+..         .......|..+|.++.|.+....=++|+.+..
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk  228 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK  228 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence            4556777664332  234677888999999999987522         22234468899999999987667788888889


Q ss_pred             EEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458          274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (389)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (389)
                      +..|++........+.... ......+..+.+-||++.+|+++.|++|+||+.++..++..+    ..|.+.|.+++|+|
T Consensus       229 l~~~Sl~~s~gslq~~~e~-~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL----kyHsagvn~vAfsp  303 (323)
T KOG0322|consen  229 LVMYSLNHSTGSLQIRKEI-TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL----KYHSAGVNAVAFSP  303 (323)
T ss_pred             ceeeeeccccCcccccceE-EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh----hhhhcceeEEEeCC
Confidence            9999987542111111111 011124888999999999999999999999999999999999    78999999999999


Q ss_pred             CCCeEEeeeCCCeeEEeecceec
Q 016458          354 DGSALCTGSWDTNLKVNLGFWRV  376 (389)
Q Consensus       354 ~~~~l~~~~~dg~i~i~~~~W~~  376 (389)
                      +...+|+++.|+.|.+    |++
T Consensus       304 d~~lmAaaskD~rISL----WkL  322 (323)
T KOG0322|consen  304 DCELMAAASKDARISL----WKL  322 (323)
T ss_pred             CCchhhhccCCceEEe----eec
Confidence            9999999999999999    986

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2e-25  Score=173.79  Aligned_cols=286  Identities=15%  Similarity=0.235  Sum_probs=207.3

Q ss_pred             CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECC--CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccc
Q 016458           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH  157 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  157 (389)
                      ..+|++..+|.|++||..+++.+..++++...++.+.|..  ....+.+++.||.|++||++.....     .......+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-----a~~~~~~~  115 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-----ARISWTQQ  115 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-----hheeccCC
Confidence            5789999999999999999999999999999999999976  5678999999999999999985421     22333444


Q ss_pred             c-cceEEEEEeeCCCcEEEEee----CCCeEEEEeCCCCee-EEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCce
Q 016458          158 K-GYVSCCQYVPDEDTHLITSS----GDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA  231 (389)
Q Consensus       158 ~-~~v~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  231 (389)
                      . .+..+++....+ +++++|+    .+-.|.+||++..+. +..+.    ..|.+.|+++.|+|.+.++|++|+.||.|
T Consensus       116 ~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~----eSH~DDVT~lrFHP~~pnlLlSGSvDGLv  190 (376)
T KOG1188|consen  116 SGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLN----ESHNDDVTQLRFHPSDPNLLLSGSVDGLV  190 (376)
T ss_pred             CCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhh----hhccCcceeEEecCCCCCeEEeecccceE
Confidence            4 456666665444 6677765    367899999998766 44443    68999999999999999999999999999


Q ss_pred             EEEeCCCCCc--ceeEEeeeccceEEEEEecCC-CEEEEEecCCeEEEEECCCCceeeEeeccCCC-------CCCCCee
Q 016458          232 RLWDTRVASR--AVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------NEIPHVT  301 (389)
Q Consensus       232 ~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~i~  301 (389)
                      .+||++...+  .+...-.|...|.++.|..++ +.|.+-+......+|+++.+.....+......       .....+.
T Consensus       191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I  270 (376)
T KOG1188|consen  191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVI  270 (376)
T ss_pred             EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhee
Confidence            9999986522  233334477889999999866 45888888999999999988755544333111       0001122


Q ss_pred             EEEeCCCCCEEEEEec-CCcEEEEEc---ccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          302 SIAFSISGRLLFAGYS-NGDCYVWDT---LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       302 ~~~~~~~~~~l~~~~~-dg~i~i~d~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      ......++...+.++. -|...++-+   .++........+..+|...|.++.|...+.++.|||.||.+.+    |..+
T Consensus       271 ~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~----Wk~~  346 (376)
T KOG1188|consen  271 NEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQA----WKVE  346 (376)
T ss_pred             ecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEE----EecC
Confidence            2211223344444433 555555543   3333333333333568888999999999999999999999999    9965


Q ss_pred             cC
Q 016458          378 EG  379 (389)
Q Consensus       378 ~~  379 (389)
                      ..
T Consensus       347 da  348 (376)
T KOG1188|consen  347 DA  348 (376)
T ss_pred             Cc
Confidence            43

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.6e-26  Score=204.05  Aligned_cols=251  Identities=16%  Similarity=0.259  Sum_probs=206.9

Q ss_pred             cCcEEEEEEcCCCCe----EEEEecCCcEEEEeCCCC------CeeEEEeeCCCcEEEEEECCCC-cEEEEecCCCcEEE
Q 016458           67 AGKVYSLDWTSERNR----IVSASQDGRLIVWNALTS------QKTHAIKLPCAWVMTCAFSPTG-QSVACGGLDSVCSI  135 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~----l~~~~~dg~v~iw~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~v  135 (389)
                      ..+-+.++|.+.+..    ||.|..||.|.+||...-      ..+.+...|.+.|..+.|++.. +.||+|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            346789999997765    889999999999997652      2355667899999999999955 59999999999999


Q ss_pred             EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (389)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  215 (389)
                      ||+.......     ...-....+.|.+++|+..-.+.|++++.+|.+.|||++..+.+..+..   ......+..++|+
T Consensus       144 WDlnn~~tP~-----~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~---~~~~~~~S~l~Wh  215 (1049)
T KOG0307|consen  144 WDLNKPETPF-----TPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD---TPGRMHCSVLAWH  215 (1049)
T ss_pred             eccCCcCCCC-----CCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc---CCCccceeeeeeC
Confidence            9999844221     1112335678999999998878899999999999999999877776632   1222457899999


Q ss_pred             CCCCcEEEEeeCCC---ceEEEeCCCCCcceeEEeeeccceEEEEEecCC-CEEEEEecCCeEEEEECCCCceeeEeecc
Q 016458          216 GSNSRMFVSGSCDS---TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQ  291 (389)
Q Consensus       216 ~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  291 (389)
                      |++...+++++.|.   .|.+||+|....+++.+.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+...
T Consensus       216 P~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~  295 (1049)
T KOG0307|consen  216 PDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ  295 (1049)
T ss_pred             CCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC
Confidence            98888888887764   699999999888999999999999999999955 89999999999999999999988887552


Q ss_pred             CCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccce
Q 016458          292 HGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAK  330 (389)
Q Consensus       292 ~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~  330 (389)
                           ..++..+.|+|... .+++++-||.|.||.+....
T Consensus       296 -----~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  296 -----GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             -----CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence                 33699999999877 88889999999999987654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.94  E-value=6.7e-25  Score=185.49  Aligned_cols=274  Identities=12%  Similarity=0.207  Sum_probs=217.4

Q ss_pred             cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC
Q 016458           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL  148 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  148 (389)
                      .|..++|-|||..|+.+..+ .+.+||...|..+.++++|...|.|++|+.+|+.+++|+.|..|.+|+..-.       
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-------   85 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-------   85 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-------
Confidence            79999999999988887655 7999999999999999999999999999999999999999999999987641       


Q ss_pred             cceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC
Q 016458          149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  228 (389)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  228 (389)
                        -.....|.+.|.|+.|+|-. +.+++++-+ ..-+|.........       ......+.+++|.. ++.+++.|-.+
T Consensus        86 --G~LkYSH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~K-------~kss~R~~~CsWtn-DGqylalG~~n  153 (1081)
T KOG1538|consen   86 --GILKYSHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVSK-------HKSSSRIICCSWTN-DGQYLALGMFN  153 (1081)
T ss_pred             --ceeeeccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHHh-------hhhheeEEEeeecC-CCcEEEEeccC
Confidence              22335799999999999986 667776653 35678766544332       23456788999997 99999999999


Q ss_pred             CceEEEeCCCCCcceeEE--eeeccceEEEEEecC-----CCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCee
Q 016458          229 STARLWDTRVASRAVRTF--HGHEGDVNTVKFFPD-----GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT  301 (389)
Q Consensus       229 g~i~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~  301 (389)
                      |+|.+-+-... +....-  -+.+++|.+++|+|.     ...+++.....++.+|.+.. +.+..-.....     ...
T Consensus       154 GTIsiRNk~gE-ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~F-----dP~  226 (1081)
T KOG1538|consen  154 GTISIRNKNGE-EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNF-----DPC  226 (1081)
T ss_pred             ceEEeecCCCC-cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCC-----Cch
Confidence            99999865433 222222  246779999999994     35788888888888888763 33332111111     257


Q ss_pred             EEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          302 SIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      ++.+.++|.|++.|+.|+.+.+|- +.|-.+.++    ...+..|..++..|++++++.|+.||+|..    +++-.
T Consensus       227 CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTv----g~~D~WIWtV~~~PNsQ~v~~GCqDGTiAC----yNl~f  294 (1081)
T KOG1538|consen  227 CISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTV----GEQDSWIWTVQAKPNSQYVVVGCQDGTIAC----YNLIF  294 (1081)
T ss_pred             hheeccCCcEEEEccCCCceEEEe-ecCeEEeec----cccceeEEEEEEccCCceEEEEEccCeeeh----hhhHH
Confidence            888999999999999999999996 467777777    457789999999999999999999999998    77654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=8.5e-25  Score=180.71  Aligned_cols=229  Identities=26%  Similarity=0.380  Sum_probs=173.9

Q ss_pred             ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe-eCCCcEEEEEECC--CCcEEEEecCCCcE
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSP--TGQSVACGGLDSVC  133 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i  133 (389)
                      +.....|.||++.|+|++|+.+|.+|++|+.|-.+.|||.-..++++.+. +|...|.++.|-|  +.+.+++|..|..|
T Consensus        40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            34556899999999999999999999999999999999999888888775 7889999999998  66788999999999


Q ss_pred             EEEeCCCCCC---CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec---Ccc--cCCC
Q 016458          134 SIFNLNSPTD---KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG---GEF--QSGH  205 (389)
Q Consensus       134 ~vw~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~--~~~~  205 (389)
                      +++|+...+.   ..+.......+..|...|..++..|.+++.+.+++.||+|+-+|++....-..-.   ...  -...
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence            9999986332   2223334556678999999999999999999999999999999998742211100   000  0112


Q ss_pred             CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc-----------------ceeEEe-eec-----------cceEEE
Q 016458          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-----------------AVRTFH-GHE-----------GDVNTV  256 (389)
Q Consensus       206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------------~~~~~~-~~~-----------~~i~~~  256 (389)
                      --...++.++|.+..+|++|+.|...++||.+...+                 ++..+. +|-           ..++-+
T Consensus       200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v  279 (758)
T KOG1310|consen  200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV  279 (758)
T ss_pred             hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence            235678999999999999999999999999542211                 122221 121           114668


Q ss_pred             EEecCCCEEEEEecCCeEEEEECCCCcee
Q 016458          257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQL  285 (389)
Q Consensus       257 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  285 (389)
                      +|+|+|.-|++.-..-.|+++|+..++..
T Consensus       280 tfnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  280 TFNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             EECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence            89999988777766668999998765543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=3.5e-24  Score=189.74  Aligned_cols=306  Identities=15%  Similarity=0.231  Sum_probs=225.8

Q ss_pred             cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC---CcEEEEEECC--CCcEEEEecCCCcEEEEe
Q 016458           63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC---AWVMTCAFSP--TGQSVACGGLDSVCSIFN  137 (389)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~---~~v~~~~~~~--~~~~l~~~~~dg~i~vw~  137 (389)
                      ..+...+-..+.|+|-...++++...-.|++||.+.++....+..+.   ..|+.+.+-.  |..++++|+.||.|+||+
T Consensus      1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred             HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence            33444467788899988899999877799999999999887776543   5688888854  567899999999999998


Q ss_pred             CCCCCCCCCCCcceeeec-------ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458          138 LNSPTDKDGNLPVSRMLS-------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (389)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  210 (389)
                      -.....  ....+.....       +..+.-.-+.|.... .+|+++|.-..|+|||.........++    .+....++
T Consensus      1140 ~y~~~~--~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP----~~s~t~vT 1212 (1387)
T KOG1517|consen 1140 DYADKW--KKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIP----YGSSTLVT 1212 (1387)
T ss_pred             cccccc--CCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeecc----cCCCccce
Confidence            654321  1111221111       112222445677665 456666668999999999988887775    45667788


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEeCCCCCc--ceeEEeeeccc--eEEEEEecCCCE-EEEEecCCeEEEEECCCCcee
Q 016458          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGD--VNTVKFFPDGNR-FGTGSDDGTCRLFDIRTGHQL  285 (389)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~  285 (389)
                      ++.-+...++++++|..||.|++||.|....  .+...+.|+..  |..+.+.+.|-- |++|+.||.|++||++.....
T Consensus      1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e 1292 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE 1292 (1387)
T ss_pred             eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc
Confidence            8888776789999999999999999997644  67778888887  999999986654 999999999999999985222


Q ss_pred             eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeec---CcCCCCCCCeeEEEECCCCCeEEeee
Q 016458          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG---SLQNSHEGRITCLGLSADGSALCTGS  362 (389)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~  362 (389)
                      ..+.....-...+..+++..++....+|+|+. +.|.||++.. +.+..++   .+.....+.+.|++|+|..-+||+|+
T Consensus      1293 ~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~ 1370 (1387)
T KOG1517|consen 1293 TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS 1370 (1387)
T ss_pred             ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhcc
Confidence            22222111111224899999999999999988 8999999853 3333332   12233456789999999999999999


Q ss_pred             CCCeeEEeecceecccCcc
Q 016458          363 WDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       363 ~dg~i~i~~~~W~~~~~~~  381 (389)
                      .|..|.|    |..+.+.+
T Consensus      1371 ~Ds~V~i----Ys~~k~~~ 1385 (1387)
T KOG1517|consen 1371 ADSTVSI----YSCEKPRL 1385 (1387)
T ss_pred             CCceEEE----eecCCcCC
Confidence            9999999    88776543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=6.8e-25  Score=177.32  Aligned_cols=243  Identities=19%  Similarity=0.292  Sum_probs=200.6

Q ss_pred             CCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeC
Q 016458          109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI  188 (389)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  188 (389)
                      .+.|+++.|+|....+++++.||.+++|.++....     +..+.+.-...+|.+..|.|+|...+++++....++.||+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-----~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl  287 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-----PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL  287 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccC-----hhheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence            36799999999999999999999999999987542     2455666667899999999999768999999999999999


Q ss_pred             CCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEE
Q 016458          189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG  268 (389)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  268 (389)
                      .+.+....-+..  ......+....+++ ++++|+..+..|.|.+....+. +.+..+. .++.|..++|+.+++.|+++
T Consensus       288 e~ak~~k~~~~~--g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~-eli~s~K-ieG~v~~~~fsSdsk~l~~~  362 (514)
T KOG2055|consen  288 ETAKVTKLKPPY--GVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTK-ELITSFK-IEGVVSDFTFSSDSKELLAS  362 (514)
T ss_pred             cccccccccCCC--CcccchhheeEecC-CCCeEEEcccCceEEeehhhhh-hhhheee-eccEEeeEEEecCCcEEEEE
Confidence            988765544321  11234577888898 8889999999999999998877 6777766 57789999999999999999


Q ss_pred             ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc------ceEEEeecCcCCCC
Q 016458          269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL------AKVVLNLGSLQNSH  342 (389)
Q Consensus       269 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~  342 (389)
                      +.+|.|.+||++...++..+......    .-+++|.++++.|||+|+..|.|.|||.++      .+++..+    ..-
T Consensus       363 ~~~GeV~v~nl~~~~~~~rf~D~G~v----~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~----dNL  434 (514)
T KOG2055|consen  363 GGTGEVYVWNLRQNSCLHRFVDDGSV----HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV----DNL  434 (514)
T ss_pred             cCCceEEEEecCCcceEEEEeecCcc----ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh----hhh
Confidence            99999999999999888887664432    357888999999999999999999999653      4555555    456


Q ss_pred             CCCeeEEEECCCCCeEEeeeC--CCeeEE
Q 016458          343 EGRITCLGLSADGSALCTGSW--DTNLKV  369 (389)
Q Consensus       343 ~~~v~~~~~~~~~~~l~~~~~--dg~i~i  369 (389)
                      ...|++|+|++|+++||.++.  +..+++
T Consensus       435 tt~Itsl~Fn~d~qiLAiaS~~~knalrL  463 (514)
T KOG2055|consen  435 TTAITSLQFNHDAQILAIASRVKKNALRL  463 (514)
T ss_pred             heeeeeeeeCcchhhhhhhhhccccceEE
Confidence            678999999999999988875  556666

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.94  E-value=6e-25  Score=184.46  Aligned_cols=256  Identities=21%  Similarity=0.328  Sum_probs=188.3

Q ss_pred             EEEEECC---CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          113 MTCAFSP---TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       113 ~~~~~~~---~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                      .+..|++   ....|+.+.+||.|.++|........ +.........|.+.|.++.|.| ++..|++++.|.++++||+.
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~-ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk  130 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL-EERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVK  130 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcch-hhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeec
Confidence            3355654   34678999999999999988744220 1112345568999999999999 67899999999999999999


Q ss_pred             CCeeEEE--ecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC--------------------------c
Q 016458          190 TGLRTSV--FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--------------------------R  241 (389)
Q Consensus       190 ~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------------------~  241 (389)
                      +......  +     .+|...|.+++|.|.+...|++|+.||.|.|||++-..                          +
T Consensus       131 ~s~l~G~~~~-----~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k  205 (720)
T KOG0321|consen  131 TSRLVGGRLN-----LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK  205 (720)
T ss_pred             cceeecceee-----cccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence            9887766  4     79999999999999999999999999999999987432                          0


Q ss_pred             ceeEEeeeccceEE---EEEecCCCEEEEEec-CCeEEEEECCCCceeeEeecc------CCCCCCCCeeEEEeCCCCCE
Q 016458          242 AVRTFHGHEGDVNT---VKFFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQQ------HGENEIPHVTSIAFSISGRL  311 (389)
Q Consensus       242 ~~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~  311 (389)
                      ......++...|.+   +.+..|...|++++. |+.|++||++...........      ........++++.....|.+
T Consensus       206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~  285 (720)
T KOG0321|consen  206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY  285 (720)
T ss_pred             cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence            11122334444544   555568889999887 999999999976543332111      11122335788888888999


Q ss_pred             EEEEecCCcEEEEEcccceE--EEeecCcCCCCCC--CeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          312 LFAGYSNGDCYVWDTLLAKV--VLNLGSLQNSHEG--RITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       312 l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      |++.+.|+.|++|++.+...  ...+    .++..  .-..-..+||+.+|++|+.|+..++    |.+.+.+..+
T Consensus       286 L~AsCtD~sIy~ynm~s~s~sP~~~~----sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayi----w~vs~~e~~~  353 (720)
T KOG0321|consen  286 LFASCTDNSIYFYNMRSLSISPVAEF----SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYI----WVVSSPEAPP  353 (720)
T ss_pred             EEEEecCCcEEEEeccccCcCchhhc----cCcccceeeeeeecCCCCceEeccCCCcceee----eeecCccCCh
Confidence            99999999999999976432  2222    12211  1122346899999999999999999    9999876654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.5e-24  Score=170.97  Aligned_cols=299  Identities=15%  Similarity=0.213  Sum_probs=228.1

Q ss_pred             eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCC------CCCeeEEEee-CCCcEEEEEECCCCcEEEEecCC
Q 016458           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL------TSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLD  130 (389)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~------~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d  130 (389)
                      -+.+-+.+|.+.|+++.|+.++++|++|+.|..+++|++.      +.+++..... |...|.|++|...+..+++|+.+
T Consensus        47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence            3455688999999999999999999999999999999974      3455555444 44889999999999999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeeccc---ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEecCcccCCCC
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLSGH---KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHT  206 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~  206 (389)
                      ++|..-|+++.+        ......|   .+.|..+..+|. ++.|++.+.++.|.+||++... ....+.   .....
T Consensus       127 ~~VI~HDiEt~q--------si~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~---~AN~~  194 (609)
T KOG4227|consen  127 GTVIKHDIETKQ--------SIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVL---PANSG  194 (609)
T ss_pred             ceeEeeecccce--------eeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceee---ecCCC
Confidence            999999998844        1222233   458999999998 4899999999999999998765 222221   13455


Q ss_pred             CCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee------ccceEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458          207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR  280 (389)
Q Consensus       207 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  280 (389)
                      ....++.|+|....+|++.+..+-+.+||.+....++....+.      ...-.++.|+|+|..|++.-....-.+||+-
T Consensus       195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~  274 (609)
T KOG4227|consen  195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI  274 (609)
T ss_pred             ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence            6788999999999999999999999999999876555443322      1223578899999999988777777889988


Q ss_pred             CCceeeEeeccC--CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc-----------------------eEEEee
Q 016458          281 TGHQLQVYYQQH--GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-----------------------KVVLNL  335 (389)
Q Consensus       281 ~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------------------~~~~~~  335 (389)
                      +.++......+.  +--....+.+++|-.|. -+++|+.+-.|++|.+...                       +.+..+
T Consensus       275 S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL  353 (609)
T KOG4227|consen  275 SQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL  353 (609)
T ss_pred             cccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEE
Confidence            755443322211  11122346778887554 4899999999999987421                       112223


Q ss_pred             cCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          336 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       336 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                          .+|.+.+..+.|+|...+|++.+..+.++|    |.-.
T Consensus       354 ----rGHRSv~NQVRF~~H~~~l~SSGVE~~~Kl----WS~~  387 (609)
T KOG4227|consen  354 ----RGHRSVPNQVRFSQHNNLLVSSGVENSFKL----WSDH  387 (609)
T ss_pred             ----ecccccccceeecCCcceEeccchhhheec----cccc
Confidence                789999999999999999999999999999    8743

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=2e-24  Score=176.41  Aligned_cols=265  Identities=17%  Similarity=0.213  Sum_probs=201.6

Q ss_pred             CcEEEEeCCCCCeeEEEeeCC--CcEEEEEECCCCcE-EEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEE
Q 016458           89 GRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQS-VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ  165 (389)
Q Consensus        89 g~v~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  165 (389)
                      ..+++||+...+....+..+.  ..+.++.|+....+ +++.+.|..+++|.-....   ...+......+.  .-.|+.
T Consensus        12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~---~~Vp~~~k~~gd--~~~Cv~   86 (673)
T KOG4378|consen   12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT---PEVPRVRKLTGD--NAFCVA   86 (673)
T ss_pred             CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCC---Cccceeeccccc--hHHHHh
Confidence            369999997766554444332  34889999876642 3344568889999876532   334444444443  233444


Q ss_pred             EeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeE
Q 016458          166 YVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT  245 (389)
Q Consensus       166 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  245 (389)
                      ..... .++++|+..+.|+|||++...+...+     ..|.+.|+++.++. ...+|++++..|.|.|..+.+. .....
T Consensus        87 ~~s~S-~y~~sgG~~~~Vkiwdl~~kl~hr~l-----kdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~-~~tt~  158 (673)
T KOG4378|consen   87 CASQS-LYEISGGQSGCVKIWDLRAKLIHRFL-----KDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTK-QKTTT  158 (673)
T ss_pred             hhhcc-eeeeccCcCceeeehhhHHHHHhhhc-----cCCcceeEEEEecC-CcceeEEeccCCcEEEEecccC-ccccc
Confidence            44443 68999999999999999977666666     78999999999998 7889999999999999999887 44444


Q ss_pred             Eeee-ccceEEEEEecCCC-EEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEE
Q 016458          246 FHGH-EGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCY  322 (389)
Q Consensus       246 ~~~~-~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~  322 (389)
                      +... ...|+-+.|+|..+ +|.+++.+|.|.+||+....+...+...+    ..+...++|+|... +|++.+.|..|.
T Consensus       159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~H----sAP~~gicfspsne~l~vsVG~Dkki~  234 (673)
T KOG4378|consen  159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAH----SAPCRGICFSPSNEALLVSVGYDKKIN  234 (673)
T ss_pred             eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhc----cCCcCcceecCCccceEEEecccceEE
Confidence            4433 34567899999665 56788899999999999877776665443    44789999999765 777889999999


Q ss_pred             EEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          323 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       323 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      +||....+....+     .-..+.+.++|+++|.+|+.|...|.|..    ||+..-
T Consensus       235 ~yD~~s~~s~~~l-----~y~~Plstvaf~~~G~~L~aG~s~G~~i~----YD~R~~  282 (673)
T KOG4378|consen  235 IYDIRSQASTDRL-----TYSHPLSTVAFSECGTYLCAGNSKGELIA----YDMRST  282 (673)
T ss_pred             Eeeccccccccee-----eecCCcceeeecCCceEEEeecCCceEEE----EecccC
Confidence            9999877776666     34568999999999999999999999999    999864

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.93  E-value=1.8e-22  Score=175.37  Aligned_cols=277  Identities=19%  Similarity=0.232  Sum_probs=203.0

Q ss_pred             CcEEEEeCCCCCeeEEEeeCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEe
Q 016458           89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV  167 (389)
Q Consensus        89 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (389)
                      +.+.+|++.........-.....|++++|+| +..+++.|+.+|.|.+||+..+.... ..........|..+++.+.|.
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-PSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-CcccccccccCCcCeEEEEEe
Confidence            4799999988744444444557799999999 66788888999999999999865321 223344456789999999998


Q ss_pred             eCCC-cEEEEeeCCCeEEEEeCCCCeeEE-EecCc------ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeC---
Q 016458          168 PDED-THLITSSGDQTCVLWDITTGLRTS-VFGGE------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT---  236 (389)
Q Consensus       168 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~---  236 (389)
                      .+.. .-|++++.||.|..|+++.-.... .....      ........+++++|.+.+.+.|++|+.+|.|.--+.   
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            7531 348999999999999877543311 11111      011334568999999999999999999999887332   


Q ss_pred             CCCC----cceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECC-CCceeeEeeccCCCCCCCCeeEEEeCCCCC-
Q 016458          237 RVAS----RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGR-  310 (389)
Q Consensus       237 ~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-  310 (389)
                      +...    +....+..|.++|+++.++|-+..++..+.|.++++|... ...++..+.....     .+++++|||... 
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~-----~v~~vaWSptrpa  455 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD-----YVTDVAWSPTRPA  455 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccc-----eeeeeEEcCcCce
Confidence            2221    2244566788999999999966655555559999999987 5555554443332     399999999876 


Q ss_pred             EEEEEecCCcEEEEEcccc--eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          311 LLFAGYSNGDCYVWDTLLA--KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       311 ~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      .++++..||.+.+||+...  .+..+.    ..+....+.+.|+++|+.|++|...|.+.+    |++.+.
T Consensus       456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~----~~~~~~l~~~~~s~~g~~lavGd~~G~~~~----~~l~~~  518 (555)
T KOG1587|consen  456 VFATVDGDGNLDIWDLLQDDEEPVLSQ----KVCSPALTRVRWSPNGKLLAVGDANGTTHI----LKLSES  518 (555)
T ss_pred             EEEEEcCCCceehhhhhccccCCcccc----cccccccceeecCCCCcEEEEecCCCcEEE----EEcCch
Confidence            6777888999999999754  334443    334667788899999999999999999999    999754

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.93  E-value=2.3e-24  Score=181.22  Aligned_cols=126  Identities=19%  Similarity=0.287  Sum_probs=103.8

Q ss_pred             eeeeecccccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCee------EEEeeCCCcEEEEEECCCCcEEEEecCC
Q 016458           58 VCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKT------HAIKLPCAWVMTCAFSPTGQSVACGGLD  130 (389)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~d  130 (389)
                      +.+..|.+|.+.|+.+.|+| +..+||||+.|..|+||.+..+-..      ..+....-.|-++.|+|...-|+..+..
T Consensus        70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~  149 (1012)
T KOG1445|consen   70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH  149 (1012)
T ss_pred             cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence            34556889999999999999 4458999999999999998744221      1222334568899999987777777788


Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG  191 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  191 (389)
                      |.++|||+.+.+       ....+.+|...|.+..|+.|| .++++++.|..|+|||.+..
T Consensus       150 g~v~i~D~stqk-------~~~el~~h~d~vQSa~WseDG-~llatscKdkqirifDPRa~  202 (1012)
T KOG1445|consen  150 GSVYITDISTQK-------TAVELSGHTDKVQSADWSEDG-KLLATSCKDKQIRIFDPRAS  202 (1012)
T ss_pred             ceEEEEEcccCc-------eeecccCCchhhhccccccCC-ceEeeecCCcceEEeCCccC
Confidence            999999999866       567788999999999999998 79999999999999998753

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.93  E-value=6.2e-24  Score=161.93  Aligned_cols=263  Identities=16%  Similarity=0.252  Sum_probs=194.1

Q ss_pred             eeeecccccCcEEEEEEcCCC-CeEEEEecC-------CcEEEEeCCCC---------CeeEEEe-eCCCcEEEEEECCC
Q 016458           59 CCRTLQGHAGKVYSLDWTSER-NRIVSASQD-------GRLIVWNALTS---------QKTHAIK-LPCAWVMTCAFSPT  120 (389)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~-~~l~~~~~d-------g~v~iw~~~~~---------~~~~~~~-~~~~~v~~~~~~~~  120 (389)
                      ....|..|.+.|..++-+|-. +.|+|+..+       ..+.||.+...         +.+..+. .+-+.|.|+.|.|+
T Consensus        55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn  134 (370)
T KOG1007|consen   55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN  134 (370)
T ss_pred             hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence            445678899999999999954 466665442       24789987543         2233333 34468999999999


Q ss_pred             CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc
Q 016458          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE  200 (389)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  200 (389)
                      +..+++-. |..|.+|++.............. ...+....++-+|+|..+..-+....|+++..||+++......+.  
T Consensus       135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~-s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~--  210 (370)
T KOG1007|consen  135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSE-SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIE--  210 (370)
T ss_pred             CCeeEEec-cCceEEEEcccCcchheeecccc-cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchh--
Confidence            99998876 78899999998653222222211 123566788889999433345556778999999999987777664  


Q ss_pred             ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEEC
Q 016458          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDI  279 (389)
Q Consensus       201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~  279 (389)
                        ..|...|..+.|+|+...+|++++.||.|++||.|....++..+.+|...|.++.|+| ..++|++|+.|..|.+|..
T Consensus       211 --dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  211 --DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             --hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence              6788899999999988899999999999999999999899999999999999999999 5678899999999999975


Q ss_pred             CCCceeeEee------------------------ccCCCCCCCCeeEEEeCCCCCE-EEEEecCCcEEEEEcc
Q 016458          280 RTGHQLQVYY------------------------QQHGENEIPHVTSIAFSISGRL-LFAGYSNGDCYVWDTL  327 (389)
Q Consensus       280 ~~~~~~~~~~------------------------~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~  327 (389)
                      ..-.....+.                        ...-..+...|.+++||.-..+ +|+-+.||++.|=.+.
T Consensus       289 ~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  289 SSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            4321000000                        0011234456999999987775 4556889998876654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=3.1e-24  Score=177.83  Aligned_cols=266  Identities=24%  Similarity=0.327  Sum_probs=202.5

Q ss_pred             eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC--------CCeeEEEeeCCCcEEEEEECCCCcEEEEecCC
Q 016458           59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT--------SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD  130 (389)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  130 (389)
                      ...++..|.+.|.+++|.|....|++++.||++.+|+++.        -+++.++.+|.++|.|+++.+++..+++|+-|
T Consensus       286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D  365 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID  365 (577)
T ss_pred             eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence            3348889999999999999999999999999999999932        25678899999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCCCC---CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458          131 SVCSIFNLNSPTDKDG---NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  207 (389)
                      |+|+.|++........   .......+.+|.+.|+.+++++.. ..|++++.||+++.|+...... ..+..   ....+
T Consensus       366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-~~f~~---~~e~g  440 (577)
T KOG0642|consen  366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-CTFGE---PKEHG  440 (577)
T ss_pred             ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-cccCC---ccccC
Confidence            9999998774332222   224567788999999999999986 5799999999999999877666 33322   12233


Q ss_pred             CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee-------eccceEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR  280 (389)
Q Consensus       208 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  280 (389)
                      ...++.+-.......++...-+.-.++++... ..+..+..       ....+..+.++|...+.+++..|+.|+++|..
T Consensus       441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~-s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~  519 (577)
T KOG0642|consen  441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV-SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK  519 (577)
T ss_pred             CcceEeeccchhHhhhhhcccccccchhhhhh-hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence            44555554423233333333333334443333 22222211       12346778899999999999999999999999


Q ss_pred             CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458          281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (389)
                      ++..+.....+..     .++++++.|+|.+|++++.||.+++|.+.........
T Consensus       520 ~~~~l~s~~a~~~-----svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es  569 (577)
T KOG0642|consen  520 TGKILHSMVAHKD-----SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES  569 (577)
T ss_pred             ccccchheeeccc-----eecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence            9998887766554     4999999999999999999999999998777666655

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.92  E-value=3.1e-22  Score=180.08  Aligned_cols=317  Identities=18%  Similarity=0.234  Sum_probs=220.4

Q ss_pred             CCCcccCCCcceeeeecccccCcEEEEEEcCCC-CeEEEEecCCcEEEEeCCCC-------CeeEEEeeCCCcEEEEEEC
Q 016458           47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTS-------QKTHAIKLPCAWVMTCAFS  118 (389)
Q Consensus        47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~~~~~  118 (389)
                      ..+..|.|.. ..+..|..|+..|..++.+++. .++++||.||+|++||...-       +...++......+.++...
T Consensus      1029 ~p~~gW~p~G-~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1029 SPPPGWNPRG-ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred             CCCCCCCccc-eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec
Confidence            3344566654 6777889999999999998865 89999999999999998542       1223334456789999999


Q ss_pred             CCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccc--ccceEEEEEeeCCCc-EEEEeeCCCeEEEEeCCCCeeEE
Q 016458          119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH--KGYVSCCQYVPDEDT-HLITSSGDQTCVLWDITTGLRTS  195 (389)
Q Consensus       119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~  195 (389)
                      +.+..+|+++.||.|++.+++.................+  ...|..-+|...... .++.+...+.|..||++......
T Consensus      1108 ~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1108 GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred             cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence            999999999999999999998732111111112222222  223333444443333 78888999999999999887666


Q ss_pred             EecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE-eeeccceEEEEEecC---CCEEEEEe--
Q 016458          196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPD---GNRFGTGS--  269 (389)
Q Consensus       196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~---~~~l~~~~--  269 (389)
                      ....   ....+.|++++.+| .++.++.|+..|.+.+||+|-. .++..+ .++..+++.+..+|-   ....++++  
T Consensus      1188 ~lk~---~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~ 1262 (1431)
T KOG1240|consen 1188 RLKN---QLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS 1262 (1431)
T ss_pred             hhhc---CccccceeEEEecC-CceEEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEeccc
Confidence            6533   34456799999999 8889999999999999999977 555444 356678888888873   24555444  


Q ss_pred             cCCeEEEEECCCCceeeEeeccCCC--------------CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE---
Q 016458          270 DDGTCRLFDIRTGHQLQVYYQQHGE--------------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV---  332 (389)
Q Consensus       270 ~dg~i~i~d~~~~~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---  332 (389)
                      ..+.|.+|++.++.....+......              .........++...+.++++|+.|+.|+.||.......   
T Consensus      1263 ~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~ 1342 (1431)
T KOG1240|consen 1263 SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYA 1342 (1431)
T ss_pred             CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccccccc
Confidence            5778999999998776666544111              01112233445555678999999999999996432221   


Q ss_pred             --------------------------Ee-------------------e----cCcCCCCCCCeeEEEECC-CCCeEEeee
Q 016458          333 --------------------------LN-------------------L----GSLQNSHEGRITCLGLSA-DGSALCTGS  362 (389)
Q Consensus       333 --------------------------~~-------------------~----~~~~~~~~~~v~~~~~~~-~~~~l~~~~  362 (389)
                                                ..                   +    ......|..+|++|++.. +..+|++++
T Consensus      1343 ~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s 1422 (1431)
T KOG1240|consen 1343 VPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSS 1422 (1431)
T ss_pred             ccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEec
Confidence                                      00                   0    000124777899998765 345899999


Q ss_pred             CCCeeEE
Q 016458          363 WDTNLKV  369 (389)
Q Consensus       363 ~dg~i~i  369 (389)
                      .||.|+|
T Consensus      1423 ~dG~Iki 1429 (1431)
T KOG1240|consen 1423 RDGVIKI 1429 (1431)
T ss_pred             CCCeeee
Confidence            9999999

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.92  E-value=7.5e-21  Score=169.07  Aligned_cols=293  Identities=33%  Similarity=0.581  Sum_probs=233.2

Q ss_pred             ecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC-eeEEEeeCC-CcEEEEEE-CCCCc-EEEEecC-CCcEEEE
Q 016458           62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-KTHAIKLPC-AWVMTCAF-SPTGQ-SVACGGL-DSVCSIF  136 (389)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~-~~v~~~~~-~~~~~-~l~~~~~-dg~i~vw  136 (389)
                      .+.+|...+.++.+.+.+..++.++.|+.+.+|+...+. ....+.... ..+..+.+ ++++. .++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            567899999999999999999999999999999998887 666666644 36777777 88887 5555444 9999999


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC-CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  215 (389)
                      +...      .......+..|...|..+.|+|++ ..+++++. |+.+++|++..+.....+     ..|...+.+++++
T Consensus       140 ~~~~------~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~  207 (466)
T COG2319         140 DLST------PGKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKPLSTL-----AGHTDPVSSLAFS  207 (466)
T ss_pred             EecC------CCeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCceEEee-----ccCCCceEEEEEc
Confidence            9986      112567788999999999999998 47777775 999999999998787777     5689999999999


Q ss_pred             CCCCc-EEEEeeCCCceEEEeCCCCCccee-EEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce-eeEeeccC
Q 016458          216 GSNSR-MFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ-LQVYYQQH  292 (389)
Q Consensus       216 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~  292 (389)
                      | ++. .+++++.|+.|++||.... .... .+..|.... ...|+|++.++++++.|+.+++|+++.... ....    
T Consensus       208 ~-~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----  280 (466)
T COG2319         208 P-DGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL----  280 (466)
T ss_pred             C-CcceEEEEecCCCcEEEEECCCC-cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE----
Confidence            7 555 5555589999999998854 5555 577787775 448999998999999999999999987765 3333    


Q ss_pred             CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee-eCCCeeEEee
Q 016458          293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG-SWDTNLKVNL  371 (389)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~~  371 (389)
                       ..+...+.++.|+|++..+++++.|+.+.+||...........  ...|...+..+.|.+++..++.+ ..|+.+.+  
T Consensus       281 -~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--  355 (466)
T COG2319         281 -SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL--  355 (466)
T ss_pred             -ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEEe--
Confidence             1224469999999988888889889899999998877666652  13677789999994343556655 67889998  


Q ss_pred             cceecccCc
Q 016458          372 GFWRVQEGA  380 (389)
Q Consensus       372 ~~W~~~~~~  380 (389)
                        |++....
T Consensus       356 --~~~~~~~  362 (466)
T COG2319         356 --WDLRTGK  362 (466)
T ss_pred             --eecCCCc
Confidence              9998776

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.3e-24  Score=174.64  Aligned_cols=308  Identities=18%  Similarity=0.358  Sum_probs=240.3

Q ss_pred             cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe-eCCCcEEEEEECC--CCcEEEEecCCCc
Q 016458           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSP--TGQSVACGGLDSV  132 (389)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~  132 (389)
                      .+.....|.+|.+.|..|.|+..|..|++|+.|..|.+||...+.....+. +|...|..-.|-|  +...+++++.||.
T Consensus       131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence            345666788999999999999999999999999999999999988877664 6777888888888  4567899999999


Q ss_pred             EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC---Ce
Q 016458          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA---DV  209 (389)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~v  209 (389)
                      +++=.+....    ...-...+..|.++|..++.-|+.+..|.+++.|+.+.-+|++.+.....+...  ..+..   ..
T Consensus       211 vr~s~i~~t~----~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr--~~~~~~~v~L  284 (559)
T KOG1334|consen  211 VRVSEILETG----YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR--EADEKERVGL  284 (559)
T ss_pred             eeeeeecccc----ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee--ccCCccceee
Confidence            9998776532    223356677899999999999999999999999999999999987665554321  23333   67


Q ss_pred             eEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc-----eeEEeee------ccceEEEEEecCCCEEEEEecCCeEEEEE
Q 016458          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-----VRTFHGH------EGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (389)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (389)
                      ..++..|.+.+.+++++.|..+++||.+...+.     +..+.+|      ...|++++|+.++.-|+++..|-.|++|.
T Consensus       285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~  364 (559)
T KOG1334|consen  285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN  364 (559)
T ss_pred             eeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence            889999988889999999999999998864222     2333222      34699999998887788888888999995


Q ss_pred             CCCCce------------eeEeeccCCCCCCCCeeEEEe-CCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCC
Q 016458          279 IRTGHQ------------LQVYYQQHGENEIPHVTSIAF-SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR  345 (389)
Q Consensus       279 ~~~~~~------------~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  345 (389)
                      -..+.-            ......  ++.....|..+-| -|...|+++|+.-|.|.||+-.+++.+..+    .+-...
T Consensus       365 ~~~~~G~~p~~~s~~~~~~k~vYK--GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M----egDr~V  438 (559)
T KOG1334|consen  365 KSMGDGSEPDPSSPREQYVKRVYK--GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM----EGDRHV  438 (559)
T ss_pred             cccccCCCCCCCcchhhccchhhc--ccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh----hcccce
Confidence            432211            111011  1112223666664 578889999999999999999999988877    455559


Q ss_pred             eeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          346 ITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       346 v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      |+||.-+|--..||+.|-|.-|+|    |...+.
T Consensus       439 VNCLEpHP~~PvLAsSGid~DVKI----WTP~~~  468 (559)
T KOG1334|consen  439 VNCLEPHPHLPVLASSGIDHDVKI----WTPLTA  468 (559)
T ss_pred             EeccCCCCCCchhhccCCccceee----ecCCcc
Confidence            999999999999999999999999    988443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.92  E-value=6.2e-23  Score=156.66  Aligned_cols=250  Identities=15%  Similarity=0.256  Sum_probs=187.9

Q ss_pred             cccCcEEEEEEcCCCC-----eEEEEecCCcEEEEeCCCCCee----EEE-----eeCCCcEEEEEECC-CCcEEEEecC
Q 016458           65 GHAGKVYSLDWTSERN-----RIVSASQDGRLIVWNALTSQKT----HAI-----KLPCAWVMTCAFSP-TGQSVACGGL  129 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~-----~l~~~~~dg~v~iw~~~~~~~~----~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~  129 (389)
                      .|.-+++.+-|.|+..     +|||.+ | .+|+|.+...+..    ..+     ..+..++++..|+. +.+++.+.+-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            5888999999999763     566544 3 7999988642211    111     23457899999987 7788999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCe
Q 016458          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV  209 (389)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  209 (389)
                      |-+..|||++.+.    ...+...+-.|..+|.+++|...+...|++.+.||.|++||++..+....+...  .....+.
T Consensus       172 DTTCTiWdie~~~----~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~--p~~~~pL  245 (364)
T KOG0290|consen  172 DTTCTIWDIETGV----SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED--PSPSTPL  245 (364)
T ss_pred             cCeEEEEEEeecc----ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC--CCCCCcc
Confidence            9999999999852    223567788999999999999988889999999999999999987655544221  2225678


Q ss_pred             eEEEeeCCCCcEEEEeeCC-CceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeE
Q 016458          210 LSVSISGSNSRMFVSGSCD-STARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQV  287 (389)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~  287 (389)
                      ..++|++.+.+++++-..| ..|.|.|+|.+..++..+.+|.+.|+.++|.| ....|++++.|..+.+||+.+.-....
T Consensus       246 lRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~  325 (364)
T KOG0290|consen  246 LRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG  325 (364)
T ss_pred             eeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC
Confidence            9999999888988876554 57999999999899999999999999999999 567899999999999999976433111


Q ss_pred             eeccCCCCCCCCeeEEEeCCC-CCEEEEEecCCcEEE
Q 016458          288 YYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYV  323 (389)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i  323 (389)
                      ......-.....|+.+.|++. +..++++... .+.+
T Consensus       326 ~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k-klei  361 (364)
T KOG0290|consen  326 EDPILAYTAGGEVNQIQWSSSQPDWIAICFGK-KLEI  361 (364)
T ss_pred             CCchhhhhccceeeeeeecccCCCEEEEEecC-eeeE
Confidence            100000112234999999964 5577776543 4443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.91  E-value=1.5e-24  Score=187.57  Aligned_cols=283  Identities=19%  Similarity=0.258  Sum_probs=220.8

Q ss_pred             ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (389)
                      ++.++.|.||.++|+|+.|...|.++++|+.|..|+||..+++.++....+|.+.++.++.+.++.++++++.|..|++|
T Consensus       180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence            45667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  216 (389)
                      .+..+.       ....+.+|++.|++++|+|-     .+.+.||++++||.+-. .....+..........+.++.+..
T Consensus       260 rl~~~~-------pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~-~~~y~prp~~~~~~~~~~s~~~~~  326 (1113)
T KOG0644|consen  260 RLPDGA-------PVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLE-PRIYVPRPLKFTEKDLVDSILFEN  326 (1113)
T ss_pred             ecCCCc-------hHHHHhccccceeeeccCcc-----ccCCCCCceEecccccc-ccccCCCCCCcccccceeeeeccc
Confidence            998765       67888999999999999994     27889999999998721 111111111122334556666665


Q ss_pred             CCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecC-CCEEEEEecCCeEEEEECCCCceeeEeeccCCCC
Q 016458          217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN  295 (389)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  295 (389)
                       ++.-+++++.|+.-..|.+...       ..+...+.-+.++.+ ..+.+++-.+-.+.+|++.++........+..  
T Consensus       327 -~~~~f~Tgs~d~ea~n~e~~~l-------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--  396 (1113)
T KOG0644|consen  327 -NGDRFLTGSRDGEARNHEFEQL-------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--  396 (1113)
T ss_pred             -cccccccccCCcccccchhhHh-------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc--
Confidence             7778899999999888876532       112222222222222 24667777888899999999987776655443  


Q ss_pred             CCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          296 EIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       296 ~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                         .+..+.++|-.. ...+++.||...|||+-.|.+++...   .+| +.+..-+||+||..++....-|.+.|
T Consensus       397 ---~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~---~gh-~kl~d~kFSqdgts~~lsd~hgql~i  464 (1113)
T KOG0644|consen  397 ---EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF---IGH-GKLVDGKFSQDGTSIALSDDHGQLYI  464 (1113)
T ss_pred             ---ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee---ccc-ceeeccccCCCCceEecCCCCCceEE
Confidence               488899999665 44567899999999999998887774   344 45667799999999998888899988

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.91  E-value=2.6e-22  Score=153.14  Aligned_cols=278  Identities=19%  Similarity=0.257  Sum_probs=197.9

Q ss_pred             eEEEEe----cCCcEEEEeCCCCCe---eEEEeeCCCcEEEEEECCCCc-EEEEecCC-------CcEEEEeCCCCCCCC
Q 016458           81 RIVSAS----QDGRLIVWNALTSQK---THAIKLPCAWVMTCAFSPTGQ-SVACGGLD-------SVCSIFNLNSPTDKD  145 (389)
Q Consensus        81 ~l~~~~----~dg~v~iw~~~~~~~---~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d-------g~i~vw~~~~~~~~~  145 (389)
                      .+++|.    .|+.|.+.++..+..   -..+..+.+.|..++-+|... .|+++..+       ..+.||.+..+....
T Consensus        28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S  107 (370)
T KOG1007|consen   28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS  107 (370)
T ss_pred             EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence            445554    367777777655432   234556778899999999554 45554331       247899998755332


Q ss_pred             C--CCcceeeec-ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee-EEEecCcccCCCCCCeeEEEeeC-CCCc
Q 016458          146 G--NLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSISG-SNSR  220 (389)
Q Consensus       146 ~--~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~  220 (389)
                      .  .+.....+. .+-+.|.|+.|.|++++ +++-. |..|.+|++..+.. ...+.......+....++-+|+| .+++
T Consensus       108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~k-lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn  185 (370)
T KOG1007|consen  108 NSSTLECVASLDTEAVGKINCVEWEPNSDK-LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN  185 (370)
T ss_pred             ccchhhHhhcCCHHHhCceeeEEEcCCCCe-eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence            1  222333333 45578999999998754 54444 88999999988766 45554433345667788999999 4555


Q ss_pred             EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCC-EEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458          221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (389)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (389)
                      .+++ ..|+++..||+|+..+....-.+|...|..+.|+|+.+ +|++++.||.|++||.+..+....-.    +.|..+
T Consensus       186 qv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el----~~HsHW  260 (370)
T KOG1007|consen  186 QVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL----PGHSHW  260 (370)
T ss_pred             eEEE-eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc----CCCceE
Confidence            5554 56899999999988666666678989999999999765 67899999999999998765443322    345558


Q ss_pred             eeEEEeCCC-CCEEEEEecCCcEEEEEcccce-----------------------------EEEeecCcCCCCCCCeeEE
Q 016458          300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAK-----------------------------VVLNLGSLQNSHEGRITCL  349 (389)
Q Consensus       300 i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~~~~~~~~~~v~~~  349 (389)
                      +.++.|+|. .+++++|+.|..|.+|....-.                             .+.++    ..|+..|+++
T Consensus       261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty----dehEDSVY~~  336 (370)
T KOG1007|consen  261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY----DEHEDSVYAL  336 (370)
T ss_pred             EEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc----cccccceEEE
Confidence            999999996 4588899999999999643211                             11122    5689999999


Q ss_pred             EECC-CCCeEEeeeCCCeeEE
Q 016458          350 GLSA-DGSALCTGSWDTNLKV  369 (389)
Q Consensus       350 ~~~~-~~~~l~~~~~dg~i~i  369 (389)
                      +||. |.-.+|+-+.||.+.|
T Consensus       337 aWSsadPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  337 AWSSADPWIFASLSYDGRVII  357 (370)
T ss_pred             eeccCCCeeEEEeccCceEEe
Confidence            9987 6678899999999998

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.91  E-value=1.6e-23  Score=162.45  Aligned_cols=253  Identities=17%  Similarity=0.270  Sum_probs=189.3

Q ss_pred             ccCcEEEEEEcCC----CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCC-cEEEEecCCCcEEEEeCCC
Q 016458           66 HAGKVYSLDWTSE----RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNS  140 (389)
Q Consensus        66 h~~~v~~~~~~~~----~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~  140 (389)
                      |......++|+-+    ..+||.|+.-|.|+|.|+.+++....+.+|...|+.+.++|+. +++++++.|..|++|++++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            6777888888764    3489999999999999999999999999999999999999954 7889999999999999998


Q ss_pred             CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec----------------------
Q 016458          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG----------------------  198 (389)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------------  198 (389)
                      ..    ...+..-+.+|.+.|.++.|++++ .++++++.|.+|++|++...+....+.                      
T Consensus       168 ~~----Cv~VfGG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp  242 (385)
T KOG1034|consen  168 DV----CVAVFGGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP  242 (385)
T ss_pred             Ce----EEEEecccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence            54    122233356899999999999998 589999999999999998432111110                      


Q ss_pred             C-cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc-------------eeEEeeeccceE--EEEEecCC
Q 016458          199 G-EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-------------VRTFHGHEGDVN--TVKFFPDG  262 (389)
Q Consensus       199 ~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------~~~~~~~~~~i~--~~~~~~~~  262 (389)
                      . .....|...|-|+.|.   ++++++-+.++.|..|......+.             +..+.-....|.  ..+|.|-+
T Consensus       243 ~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~  319 (385)
T KOG1034|consen  243 DFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ  319 (385)
T ss_pred             cccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH
Confidence            0 0113455666666664   478999999999999987221111             112222222333  34566778


Q ss_pred             CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      +.|+.|...|.|.+||++...+..... .........|...+|+.||..|+..++|+.|.-||..
T Consensus       320 ~~la~gnq~g~v~vwdL~~~ep~~~tt-l~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  320 KMLALGNQSGKVYVWDLDNNEPPKCTT-LTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             HHHhhccCCCcEEEEECCCCCCccCce-EEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            899999999999999999876642211 1112334469999999999999999999999999853

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.90  E-value=1e-19  Score=161.82  Aligned_cols=302  Identities=33%  Similarity=0.592  Sum_probs=237.6

Q ss_pred             CCCCcccCCCc-ceeeeecccccCcEEEEEEcCCCCeEEEEec-CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc-
Q 016458           46 GRAPVSFGPTD-LVCCRTLQGHAGKVYSLDWTSERNRIVSASQ-DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ-  122 (389)
Q Consensus        46 ~~~~~~~~~~~-~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  122 (389)
                      +.....|+... ......+..|...|.+++|+|++..+++++. |+.+++|+...+..+..+..|...+.+++|+|++. 
T Consensus       133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  212 (466)
T COG2319         133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL  212 (466)
T ss_pred             CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce
Confidence            44566677776 7888899999999999999999998888885 99999999999888999999999999999999998 


Q ss_pred             EEEEecCCCcEEEEeCCCCCCCCCCCccee-eecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee-EEEecCc
Q 016458          123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSR-MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGE  200 (389)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~  200 (389)
                      .+++++.|+.|++||...+.       ... .+..|.... ...|++++ ..+++++.|+.+++|+...... ...+   
T Consensus       213 ~~~~~~~d~~i~~wd~~~~~-------~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~---  280 (466)
T COG2319         213 LIASGSSDGTIRLWDLSTGK-------LLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTL---  280 (466)
T ss_pred             EEEEecCCCcEEEEECCCCc-------EEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEE---
Confidence            55555899999999776432       334 577777775 44899987 6888999999999999987765 3333   


Q ss_pred             ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe--eeccceEEEEEecCCCEEEEE-ecCCeEEEE
Q 016458          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGTG-SDDGTCRLF  277 (389)
Q Consensus       201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~  277 (389)
                        ..|...+.++.+.| .+..+++++.|+.+.+||.... .......  .|...+..+.|.+++..++.+ ..|+.+.+|
T Consensus       281 --~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  356 (466)
T COG2319         281 --SGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETG-KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW  356 (466)
T ss_pred             --ecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCC-ceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEee
Confidence              46788999999999 6667777888899999988876 4444443  677789999994332556555 688999999


Q ss_pred             ECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEE-EecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC
Q 016458          278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS  356 (389)
Q Consensus       278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (389)
                      ++........... ..     .+..+.+++ ...+.. +..++.+.+|+...........    .+...+....+++++.
T Consensus       357 ~~~~~~~~~~~~~-~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  425 (466)
T COG2319         357 DLRTGKPLKTLEG-HS-----NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLD----GHTSRVTSLDFSPDGK  425 (466)
T ss_pred             ecCCCceeEEecC-Cc-----eEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeecc----CCCCcEEEEEECCCCc
Confidence            9988772222211 11     167888888 544443 6889999999999888877763    3227899999999999


Q ss_pred             eEEeeeCCCeeEEeecceeccc
Q 016458          357 ALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       357 ~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      .+++++.++.+++    |+...
T Consensus       426 ~~~~~~~~~~~~~----~~~~~  443 (466)
T COG2319         426 SLASGSSDNTIRL----WDLKT  443 (466)
T ss_pred             EEEEecCCCcEEE----EeccC
Confidence            9999999999999    99877

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.90  E-value=2.3e-22  Score=166.05  Aligned_cols=263  Identities=20%  Similarity=0.314  Sum_probs=193.3

Q ss_pred             cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEE-CC-------CCcEEEEecCCCcEEEE
Q 016458           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF-SP-------TGQSVACGGLDSVCSIF  136 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~-~~-------~~~~l~~~~~dg~i~vw  136 (389)
                      -|...|.|+.|+.....+.+++ |..+.+|+-.+......+..+...+....+ -+       ....|+.++.||.+.+.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            4666778999998776666554 556666654444444444333332222111 11       23568888999999998


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  216 (389)
                      +-...        +......|.+.+.+-.|+|+| .-|++++.||.|++|.- +|....++     .....+|.|++|.|
T Consensus        91 ~k~~r--------VE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSr-sGMLRStl-----~Q~~~~v~c~~W~p  155 (737)
T KOG1524|consen   91 NKSAR--------VERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSR-SGMLRSTV-----VQNEESIRCARWAP  155 (737)
T ss_pred             cccch--------hhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEec-cchHHHHH-----hhcCceeEEEEECC
Confidence            76542        556778999999999999998 67999999999999985 44433333     45677899999999


Q ss_pred             CCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCC
Q 016458          217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE  296 (389)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  296 (389)
                      ..++.+++.+  +.+.|=-+... ..+..+++|.+-|.++.|++..+++++|+.|-..++||.. |..+.....     +
T Consensus       156 ~S~~vl~c~g--~h~~IKpL~~n-~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~-----~  226 (737)
T KOG1524|consen  156 NSNSIVFCQG--GHISIKPLAAN-SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAA-----E  226 (737)
T ss_pred             CCCceEEecC--CeEEEeecccc-cceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCCh-----h
Confidence            7777777654  66777666655 5567889999999999999999999999999999999965 455444333     3


Q ss_pred             CCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      ..+|++++|+|+ +.++.++.+ .++            +.   ....+.|..++||+||..++.|+..|.+.+
T Consensus       227 ey~ITSva~npd-~~~~v~S~n-t~R------------~~---~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  227 EYAITSVAFNPE-KDYLLWSYN-TAR------------FS---SPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ccceeeeeeccc-cceeeeeee-eee------------ec---CCCccceEEEEEcCCCceeeccccCceEEE
Confidence            346999999999 666666543 343            21   456788999999999999999999998876

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.90  E-value=8e-22  Score=156.76  Aligned_cols=217  Identities=20%  Similarity=0.295  Sum_probs=169.9

Q ss_pred             eeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec--CcccCCCCCCeeEEEeeCCCCcEEEEeeCCC
Q 016458          152 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG--GEFQSGHTADVLSVSISGSNSRMFVSGSCDS  229 (389)
Q Consensus       152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  229 (389)
                      -.+.+|+++|..+.|+|.+++.+++|+.|.+|.||++..+.....+.  .....+|...|-.++|+|.-.+.|++++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            45679999999999999999999999999999999997663322221  1112789999999999999999999999999


Q ss_pred             ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC
Q 016458          230 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  309 (389)
Q Consensus       230 ~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  309 (389)
                      .|.+||+.++ ..+..+. |...|.++.|+.||.+|++.+.|..|+|||.++++.+..-..+.+.    .-..+.|-.+|
T Consensus       155 ~v~iWnv~tg-eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~----k~~Raifl~~g  228 (472)
T KOG0303|consen  155 TVSIWNVGTG-EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA----KPARAIFLASG  228 (472)
T ss_pred             eEEEEeccCC-ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC----CcceeEEeccC
Confidence            9999999998 6666666 9999999999999999999999999999999999988877444433    24556677888


Q ss_pred             CEEEEEe---cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeee-CCCeeEEeecceecccCc
Q 016458          310 RLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       310 ~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~W~~~~~~  380 (389)
                      ..+-+|.   ++..+-+||..+.+....+..  ...++.|.---|++|...+..+| .|+.|+.    +.+.+..
T Consensus       229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e--lDtSnGvl~PFyD~dt~ivYl~GKGD~~IRY----yEit~d~  297 (472)
T KOG0303|consen  229 KIFTTGFSRMSERQIALWDPNNLEEPIALQE--LDTSNGVLLPFYDPDTSIVYLCGKGDSSIRY----FEITNEP  297 (472)
T ss_pred             ceeeeccccccccceeccCcccccCcceeEE--eccCCceEEeeecCCCCEEEEEecCCcceEE----EEecCCC
Confidence            8555553   366899999776444333322  12344565556788888776655 5999998    8887765

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=8.5e-23  Score=169.39  Aligned_cols=265  Identities=18%  Similarity=0.293  Sum_probs=196.0

Q ss_pred             EEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCC-CCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe
Q 016458          104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP-TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT  182 (389)
Q Consensus       104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  182 (389)
                      ++..|...++.++|+|....|++++.||.+.+|++... ...........++.+|.++|.|+++.+.+ ..+++|+.||+
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~  367 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGT  367 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc-eEEEeeccCce
Confidence            45567788999999999999999999999999999431 12234556778899999999999999987 78999999999


Q ss_pred             EEEEeCCCC------eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEE
Q 016458          183 CVLWDITTG------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV  256 (389)
Q Consensus       183 i~iwd~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~  256 (389)
                      |+.|++...      .....+. ....+|.+.+..+++++ ....|++++.||++++|+......+........+....+
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~-~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsv  445 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLS-GTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSV  445 (577)
T ss_pred             eeeeccCCCCCcccccCcchhc-cceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceE
Confidence            999966522      1111111 11268999999999998 677799999999999999886633222212222334455


Q ss_pred             EEecCC-CEEEEEecCCeEEEEECCCCceeeEeeccCC--CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEE
Q 016458          257 KFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL  333 (389)
Q Consensus       257 ~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  333 (389)
                      .+-... ...++...-+.-.+++......+..+.....  ......+..+.+.|.+.+.+++..|+.|+++|..+++++.
T Consensus       446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~  525 (577)
T KOG0642|consen  446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH  525 (577)
T ss_pred             eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence            554322 2233333334444445444444444432221  1222357889999999999999999999999999999999


Q ss_pred             eecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       334 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      ..    ..|...++++++.|+|.+|++++.||.+++    |++...
T Consensus       526 s~----~a~~~svtslai~~ng~~l~s~s~d~sv~l----~kld~k  563 (577)
T KOG0642|consen  526 SM----VAHKDSVTSLAIDPNGPYLMSGSHDGSVRL----WKLDVK  563 (577)
T ss_pred             he----eeccceecceeecCCCceEEeecCCceeeh----hhccch
Confidence            88    799999999999999999999999999999    998654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.90  E-value=3.7e-22  Score=154.71  Aligned_cols=238  Identities=21%  Similarity=0.380  Sum_probs=185.2

Q ss_pred             cEEEEEEc-------CCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC-----CcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458           69 KVYSLDWT-------SERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-----AWVMTCAFSPTGQSVACGGLDSVCSIF  136 (389)
Q Consensus        69 ~v~~~~~~-------~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (389)
                      .|...+|-       |+.+++|+.+.+.-|++||.-+|+....+..-.     ....+++|+|||..|++| ....|+++
T Consensus       106 tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvF  184 (406)
T KOG2919|consen  106 TVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVF  184 (406)
T ss_pred             EEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEe
Confidence            47777775       566799999999999999999999888776432     346789999999999977 46799999


Q ss_pred             eCCCCCCCCCC-CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458          137 NLNSPTDKDGN-LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (389)
Q Consensus       137 ~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  215 (389)
                      |+..+...... ........+..+-+.|++|+|.....++.|+....+-||.-..+.+...+     .+|.+.|+.+.|.
T Consensus       185 dt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll-----ggh~gGvThL~~~  259 (406)
T KOG2919|consen  185 DTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL-----GGHGGGVTHLQWC  259 (406)
T ss_pred             eccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee-----cccCCCeeeEEec
Confidence            99543321111 11122234457889999999998789999999999999999888888888     7999999999999


Q ss_pred             CCCCcEEEEee-CCCceEEEeCCCCCcceeEEeeecc-ceEEEEE--ecCCCEEEEEecCCeEEEEECCC-CceeeEeec
Q 016458          216 GSNSRMFVSGS-CDSTARLWDTRVASRAVRTFHGHEG-DVNTVKF--FPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQ  290 (389)
Q Consensus       216 ~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~  290 (389)
                      + +++.|++|. .|..|..||+|....++..+..|.. .-..|.|  .|++++|++|+.||.|++||+.. +.....+..
T Consensus       260 e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~  338 (406)
T KOG2919|consen  260 E-DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN  338 (406)
T ss_pred             c-CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc
Confidence            9 555666655 4789999999998888888887766 3344544  57899999999999999999998 554444433


Q ss_pred             cCCCCCCCCeeEEEeCCCCCEEEEEecC
Q 016458          291 QHGENEIPHVTSIAFSISGRLLFAGYSN  318 (389)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (389)
                      ..     ..++.++++|-=.++++++..
T Consensus       339 ~s-----d~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  339 YS-----DTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cc-----ccccceecCcccceeeeccCc
Confidence            32     348999999997777777543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.90  E-value=3.4e-22  Score=169.37  Aligned_cols=255  Identities=15%  Similarity=0.250  Sum_probs=197.4

Q ss_pred             CCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEe
Q 016458           48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG  127 (389)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  127 (389)
                      ....+++.+.....+|+||++.|+|++|+.||+++|+|+.|..|.+|+..-...+  --.|...|.|+.|+|-...|+++
T Consensus        34 rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L--kYSH~D~IQCMsFNP~~h~LasC  111 (1081)
T KOG1538|consen   34 RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL--KYSHNDAIQCMSFNPITHQLASC  111 (1081)
T ss_pred             EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee--eeccCCeeeEeecCchHHHhhhc
Confidence            3457889999999999999999999999999999999999999999985432222  13577889999999999999988


Q ss_pred             cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458          128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (389)
Q Consensus       128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  207 (389)
                      +-+ ..-+|..+...         .........+.+++|..|| ++++.|-.+|+|.+-+-........-.+   .+..+
T Consensus       112 sLs-dFglWS~~qK~---------V~K~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~~I~Rp---gg~Ns  177 (1081)
T KOG1538|consen  112 SLS-DFGLWSPEQKS---------VSKHKSSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKVKIERP---GGSNS  177 (1081)
T ss_pred             chh-hccccChhhhh---------HHhhhhheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcceEEeCC---CCCCC
Confidence            754 46788876522         1112234678899999998 8999999999999987554443333221   46788


Q ss_pred             CeeEEEeeCCC----CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458          208 DVLSVSISGSN----SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (389)
Q Consensus       208 ~v~~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (389)
                      +|.+++|+|..    ...+++.....++.+|.+..  +.+..-+.-+-...|+.+.++|.+++.|+.|+.+.+|. +.|-
T Consensus       178 piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG--~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~Gv  254 (1081)
T KOG1538|consen  178 PIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG--KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGV  254 (1081)
T ss_pred             CceEEEecCCCCCCccceEEEEeccceeEEEEecc--eeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCe
Confidence            99999999843    34677777777888887762  33333333445678999999999999999999999997 4565


Q ss_pred             eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (389)
                      .+.+...     ...+|..++..|++++++.|+.||+|..|++
T Consensus       255 rLGTvg~-----~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  255 RLGTVGE-----QDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             EEeeccc-----cceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            5555533     2347999999999999999999999999985

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.90  E-value=1.4e-21  Score=169.74  Aligned_cols=259  Identities=17%  Similarity=0.217  Sum_probs=190.0

Q ss_pred             ccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCe--eEE----EeeCCCcEEEEEECCCC--cEEEEecCCCcEEEE
Q 016458           66 HAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQK--THA----IKLPCAWVMTCAFSPTG--QSVACGGLDSVCSIF  136 (389)
Q Consensus        66 h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~--~~~----~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vw  136 (389)
                      -...|+|+.|+| +.+++|.|+.+|.|.+||+..+..  ...    ...|..+++.+.|..+.  .-+++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            345799999999 556888899999999999987765  222    23577899999997644  449999999999999


Q ss_pred             eCCCCCCCCCCCcceeee-----cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEE--EecC-cccCCCCCC
Q 016458          137 NLNSPTDKDGNLPVSRML-----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS--VFGG-EFQSGHTAD  208 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~-~~~~~~~~~  208 (389)
                      +++.-..+..........     ..-...+++++|.+..+..|+.|+.+|.|..-+-.......  .+.. .....|.++
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            887643221111111111     12234688999999988999999999999874433222111  1111 112578899


Q ss_pred             eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecC-CCEEEEEecCCeEEEEECCCCceeeE
Q 016458          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQV  287 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~  287 (389)
                      |+++.++|.....+++++ |.+++||.......++..+..+...+++++|||. ...|+++..||.|.+||+........
T Consensus       401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv  479 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV  479 (555)
T ss_pred             eEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence            999999998777777777 9999999988444778788878888999999994 45778888899999999976543333


Q ss_pred             eeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (389)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (389)
                      ......   ....+.+.|+++|+.|++|...|.+++|++..
T Consensus       480 ~s~~~~---~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  480 LSQKVC---SPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cccccc---ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            222111   23467888999999999999999999999853

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3e-20  Score=138.65  Aligned_cols=275  Identities=15%  Similarity=0.196  Sum_probs=197.6

Q ss_pred             cEEEEEEcCCCCeEEEEecCCcEEEEeCCC---------C-CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeC
Q 016458           69 KVYSLDWTSERNRIVSASQDGRLIVWNALT---------S-QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL  138 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~  138 (389)
                      .|.+-+|+|.+++|++|+.+|.|.++.+.+         + ..+...+.|.++++.++|.  ..+|++|+ ||.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence            467778999999999999999999998743         2 2344557899999999998  55666665 599999988


Q ss_pred             CCCCCCCCCCcc-eeeeccc-----ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458          139 NSPTDKDGNLPV-SRMLSGH-----KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (389)
Q Consensus       139 ~~~~~~~~~~~~-~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  212 (389)
                      +...+.....+. ......|     -..|+++...|..+ -++.++.|+.++-||+++|+....+     .+|.+.+.++
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G~i~r~~-----rGHtDYvH~v  162 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDGRIQREY-----RGHTDYVHSV  162 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCCEEEEEE-----cCCcceeeee
Confidence            764321111000 0111112     24688899998874 4666669999999999999999999     8999999999


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee---------ecc-ceEEEEEecCCCEEEEEecCCeEEEEECCCC
Q 016458          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---------HEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG  282 (389)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  282 (389)
                      .--. ....+++|++||++++||.++. +.+..+..         |.+ .|.+++.  +..++++|+. ..+.+|.++..
T Consensus       163 v~R~-~~~qilsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrss  237 (325)
T KOG0649|consen  163 VGRN-ANGQILSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSS  237 (325)
T ss_pred             eecc-cCcceeecCCCccEEEEecccc-ceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCC
Confidence            8855 5567889999999999999987 55554432         222 3556665  4557777654 58999999999


Q ss_pred             ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC-CCeEEee
Q 016458          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-GSALCTG  361 (389)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~  361 (389)
                      ++...+.....      +..+.|..  ..+++++..+.|.-|.+ +|......    .......++..|+.. -++|-.+
T Consensus       238 e~t~vfpipa~------v~~v~F~~--d~vl~~G~g~~v~~~~l-~Gvl~a~i----p~~s~~c~s~s~~~~p~k~~s~a  304 (325)
T KOG0649|consen  238 ESTCVFPIPAR------VHLVDFVD--DCVLIGGEGNHVQSYTL-NGVLQANI----PVESTACYSASWQTSPIKFISIA  304 (325)
T ss_pred             CceEEEecccc------eeEeeeec--ceEEEeccccceeeeee-ccEEEEec----cCCccceeeecccCCceEEEEec
Confidence            99888876543      67788854  46777777888999986 44444444    333445566666543 3566667


Q ss_pred             eCCCeeEEe
Q 016458          362 SWDTNLKVN  370 (389)
Q Consensus       362 ~~dg~i~i~  370 (389)
                      +..+.+.|+
T Consensus       305 g~s~~~~i~  313 (325)
T KOG0649|consen  305 GFSNKLHIL  313 (325)
T ss_pred             ccceeeeee
Confidence            778888873

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.90  E-value=3e-20  Score=158.08  Aligned_cols=284  Identities=12%  Similarity=0.131  Sum_probs=179.7

Q ss_pred             EEEEecCCcEEEEeCCC-CC--eeEEEeeCCCcEEEEEECCCCcEEEEec-CCCcEEEEeCCCCCCCCCCCcceeeeccc
Q 016458           82 IVSASQDGRLIVWNALT-SQ--KTHAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSGH  157 (389)
Q Consensus        82 l~~~~~dg~v~iw~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  157 (389)
                      +++...++.|.+|++.+ ++  .+..+.. .+....++++|++++|++++ .++.|.+|+++...    .+....... .
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g----~l~~~~~~~-~   78 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG----ALTFAAESP-L   78 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC----ceEEeeeec-C
Confidence            34446789999999964 33  3344433 35577899999999987764 57889999997311    111122211 2


Q ss_pred             ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEecCcccCCCCCCeeEEEeeCCCCcEE-EEeeCCCceEEEe
Q 016458          158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWD  235 (389)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d  235 (389)
                      .+....+.++|++..++++...++.|.+|++.+.. .......   .........++++| +++++ ++...++.|.+||
T Consensus        79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~---~~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d  154 (330)
T PRK11028         79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI---IEGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFT  154 (330)
T ss_pred             CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee---ccCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEE
Confidence            23567899999985444444468999999996432 1111100   12234567788999 55555 5566679999999


Q ss_pred             CCCCCcce----eEEe-eeccceEEEEEecCCCEEEEEec-CCeEEEEECCC--Cce--eeEeeccCC-CCCCCCeeEEE
Q 016458          236 TRVASRAV----RTFH-GHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRT--GHQ--LQVYYQQHG-ENEIPHVTSIA  304 (389)
Q Consensus       236 ~~~~~~~~----~~~~-~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~~--~~~~~~~~~-~~~~~~i~~~~  304 (389)
                      +.......    .... ........++|+|++++++++.. ++.|.+|++..  ++.  ...+..... .........+.
T Consensus       155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~  234 (330)
T PRK11028        155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH  234 (330)
T ss_pred             ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence            97642221    0111 12334678999999999988876 89999999974  222  222211100 01111234689


Q ss_pred             eCCCCCEEEEEec-CCcEEEEEcccce-EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC-CCeeEEeecceecc--cC
Q 016458          305 FSISGRLLFAGYS-NGDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DTNLKVNLGFWRVQ--EG  379 (389)
Q Consensus       305 ~~~~~~~l~~~~~-dg~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~W~~~--~~  379 (389)
                      ++|+|++++++.. ++.|.+|++.... ........ .. ......++++|||++|++++. ++.|.+    |+++  +|
T Consensus       235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~-~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v----~~~~~~~g  308 (330)
T PRK11028        235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ-PT-ETQPRGFNIDHSGKYLIAAGQKSHHISV----YEIDGETG  308 (330)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE-ec-cccCCceEECCCCCEEEEEEccCCcEEE----EEEcCCCC
Confidence            9999999999864 6889999986432 11111110 11 134567999999999998776 899999    9874  45


Q ss_pred             cc
Q 016458          380 AL  381 (389)
Q Consensus       380 ~~  381 (389)
                      .+
T Consensus       309 ~l  310 (330)
T PRK11028        309 LL  310 (330)
T ss_pred             cE
Confidence            44

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.90  E-value=3.9e-21  Score=152.87  Aligned_cols=238  Identities=18%  Similarity=0.241  Sum_probs=182.8

Q ss_pred             EEeeCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe
Q 016458          104 AIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT  182 (389)
Q Consensus       104 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  182 (389)
                      .+.+|.++|..++|+| +...+|+|+.|.+|.||++..+............+.+|...|-.++|+|.-.+.|++++.|..
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            3568999999999999 667889999999999999987654444455678899999999999999998899999999999


Q ss_pred             EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeecc-ceEEEEEecC
Q 016458          183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFPD  261 (389)
Q Consensus       183 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~  261 (389)
                      |.+||+.+++.+..+      .|.+.|.++.|+. ++.+|++++.|..|+|||.+.+ +.+..-.+|.+ .-..+.|-.+
T Consensus       156 v~iWnv~tgeali~l------~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~~  227 (472)
T KOG0303|consen  156 VSIWNVGTGEALITL------DHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLAS  227 (472)
T ss_pred             EEEEeccCCceeeec------CCCCeEEEEEecc-CCceeeeecccceeEEEcCCCC-cEeeecccccCCCcceeEEecc
Confidence            999999999988887      4999999999998 9999999999999999999988 67776677876 3456678788


Q ss_pred             CCEEEEEe---cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEE-EecCCcEEEEEcccceEEEe-ec
Q 016458          262 GNRFGTGS---DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKVVLN-LG  336 (389)
Q Consensus       262 ~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~-~~  336 (389)
                      +.++.+|.   .+..+-+||.........+....   ....|.---|.+|.++++. |-.|+.|+-|.+....+... +.
T Consensus       228 g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD---tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln  304 (472)
T KOG0303|consen  228 GKIFTTGFSRMSERQIALWDPNNLEEPIALQELD---TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLN  304 (472)
T ss_pred             CceeeeccccccccceeccCcccccCcceeEEec---cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEec
Confidence            88555554   46789999977655443332211   1223555567888887765 55699999999877654322 22


Q ss_pred             CcCCCCCCCeeEEEECCC
Q 016458          337 SLQNSHEGRITCLGLSAD  354 (389)
Q Consensus       337 ~~~~~~~~~v~~~~~~~~  354 (389)
                      .  .....+-..+.|-|.
T Consensus       305 ~--f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  305 T--FSSKEPQRGMGFMPK  320 (472)
T ss_pred             c--cccCCcccccccccc
Confidence            1  122234455666553

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=3.9e-22  Score=166.62  Aligned_cols=251  Identities=15%  Similarity=0.209  Sum_probs=195.6

Q ss_pred             eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC
Q 016458          101 KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD  180 (389)
Q Consensus       101 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  180 (389)
                      +...+.+|.+.|.++...|.|.+|++|+.||+|+||.+.++.       +..... ..+.|.|++|+|.+...++++..+
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR-------cvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~  463 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR-------CVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG  463 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce-------EEEEEe-ecceeEEEEecCCCCceeEEEEec
Confidence            345567899999999999999999999999999999999866       444433 346899999999887666666666


Q ss_pred             CeEEEEeCCCCeeEE----------------------EecC----------cccCCCCCCeeEEEeeCCCCcEEEEeeCC
Q 016458          181 QTCVLWDITTGLRTS----------------------VFGG----------EFQSGHTADVLSVSISGSNSRMFVSGSCD  228 (389)
Q Consensus       181 g~i~iwd~~~~~~~~----------------------~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  228 (389)
                      ..+.+.+..-|..+.                      ....          .....|...|..+.|+. .+.+|++...+
T Consensus       464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~  542 (733)
T KOG0650|consen  464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPD  542 (733)
T ss_pred             CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccC
Confidence            666666543331100                      0000          01134677899999998 88899886653


Q ss_pred             ---CceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEe
Q 016458          229 ---STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF  305 (389)
Q Consensus       229 ---g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (389)
                         ..|.|+++... ....-|....+.|.++.|+|...+|++++. ..|++||+........+.....     .|..++.
T Consensus       543 ~~~~~VliHQLSK~-~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~k-----wiS~msi  615 (733)
T KOG0650|consen  543 SGNKSVLIHQLSKR-KSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSK-----WISSMSI  615 (733)
T ss_pred             CCcceEEEEecccc-cccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCe-----eeeeeee
Confidence               47889998766 444556556778999999999999998876 5899999998776666544433     5999999


Q ss_pred             CCCCCEEEEEecCCcEEEEEcccc-eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEee
Q 016458          306 SISGRLLFAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNL  371 (389)
Q Consensus       306 ~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~  371 (389)
                      +|.|..|++|+.|+.+..||+.-. ++.+++    ..|...+++++|++.-.++++|+.||.+.|+.
T Consensus       616 hp~GDnli~gs~d~k~~WfDldlsskPyk~l----r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  616 HPNGDNLILGSYDKKMCWFDLDLSSKPYKTL----RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             cCCCCeEEEecCCCeeEEEEcccCcchhHHh----hhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            999999999999999999999854 566666    78999999999999999999999999999933

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.90  E-value=1.3e-19  Score=143.15  Aligned_cols=240  Identities=15%  Similarity=0.222  Sum_probs=179.7

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC--CCcEEEEeCCCCCCC
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDK  144 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~  144 (389)
                      ...+..+.|+.+...|..|+.|| .++|+................|.-+-|+.  .++|..+.  -+.++++++....  
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~--   79 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKT--   79 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCc--
Confidence            34577788999999999999998 78898776655433334444566666764  44444433  3458888887533  


Q ss_pred             CCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEE
Q 016458          145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS  224 (389)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  224 (389)
                           .+... ....+|.++.++.+   .|+++-.+. |+|||+.+.+.+.++...  ..+...+.++..++ .+.+++.
T Consensus        80 -----~ICe~-~fpt~IL~VrmNr~---RLvV~Lee~-IyIydI~~MklLhTI~t~--~~n~~gl~AlS~n~-~n~ylAy  146 (391)
T KOG2110|consen   80 -----TICEI-FFPTSILAVRMNRK---RLVVCLEES-IYIYDIKDMKLLHTIETT--PPNPKGLCALSPNN-ANCYLAY  146 (391)
T ss_pred             -----eEEEE-ecCCceEEEEEccc---eEEEEEccc-EEEEecccceeehhhhcc--CCCccceEeeccCC-CCceEEe
Confidence                 12221 23467888888763   455555544 999999999998887421  23455566666665 4456654


Q ss_pred             --eeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCe-EEEEECCCCceeeEeeccCCCCCCCCee
Q 016458          225 --GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGHQLQVYYQQHGENEIPHVT  301 (389)
Q Consensus       225 --~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~i~  301 (389)
                        ....|.|.+||..+. +++..+.+|.+++-+++|+++|.+||+++..|+ ||+|.+.+++.+..+.....   ...|.
T Consensus       147 p~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---~~~Iy  222 (391)
T KOG2110|consen  147 PGSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---PVSIY  222 (391)
T ss_pred             cCCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---eeEEE
Confidence              234689999999988 888999999999999999999999999999987 79999999999999877543   33589


Q ss_pred             EEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458          302 SIAFSISGRLLFAGYSNGDCYVWDTLL  328 (389)
Q Consensus       302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (389)
                      +++|+|++++|++.+..++|++|.+..
T Consensus       223 SL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  223 SLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             EEEECCCCCeEEEecCCCeEEEEEecc
Confidence            999999999999999999999998753

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.90  E-value=2.1e-23  Score=169.01  Aligned_cols=275  Identities=17%  Similarity=0.233  Sum_probs=217.9

Q ss_pred             CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (389)
                      -.-..+.++.+|+.|+.|+.-|.|-.+|..+++....+... +.|.++.|..+.+++|++- ...++|||-...      
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~Gt------  201 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGT------  201 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhhh-hceEEEecCCCc------
Confidence            34668999999999999999999999999999998888765 4599999999999888875 567899997652      


Q ss_pred             CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (389)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (389)
                        ....++.| ..|..+.|.|.. -+|++++..|.++--|+.+|+.+..+     ....+.+..++-+| -+..+-+|..
T Consensus       202 --ElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~-----~t~~G~~~vm~qNP-~NaVih~Ghs  271 (545)
T KOG1272|consen  202 --ELHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASI-----RTGAGRTDVMKQNP-YNAVIHLGHS  271 (545)
T ss_pred             --EEeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhHHH-----HccCCccchhhcCC-ccceEEEcCC
Confidence              34444444 568889999985 78889999999999999999999988     56778888899998 7778899999


Q ss_pred             CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC
Q 016458          228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  307 (389)
Q Consensus       228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (389)
                      .|+|.+|..... .++..+..|.++|.++++.++|.|+++.+.|..++|||++....+.++...+      +...+++|.
T Consensus       272 nGtVSlWSP~sk-ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~------~a~~ls~Sq  344 (545)
T KOG1272|consen  272 NGTVSLWSPNSK-EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH------PASNLSLSQ  344 (545)
T ss_pred             CceEEecCCCCc-chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC------Ccccccccc
Confidence            999999999887 7777888899999999999999999999999999999999988777766533      267888886


Q ss_pred             CCCEEEEEecCCcEEEEE-cccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          308 SGRLLFAGYSNGDCYVWD-TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       308 ~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      .| +||++ ....|.||. ...+..-...........++|..+.|.|-...|-.|...|.-.|
T Consensus       345 kg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi  405 (545)
T KOG1272|consen  345 KG-LLALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI  405 (545)
T ss_pred             cc-ceeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence            65 45555 444799995 22222111222222344568999999997777777766665444

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=4.6e-21  Score=147.67  Aligned_cols=213  Identities=21%  Similarity=0.316  Sum_probs=160.8

Q ss_pred             ecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC----eeEEEecCcccCCCCCCeeEEEee-CCCCcEEEEeeCC
Q 016458          154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG----LRTSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSCD  228 (389)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~d  228 (389)
                      ..+|..-|.++.|.+.| +.+++|+.|++|+|||.+..    .+....     ..|.+.|..+.|. |.-++.+++++.|
T Consensus         9 ~s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-----rah~~Si~rV~WAhPEfGqvvA~cS~D   82 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCTSSW-----RAHDGSIWRVVWAHPEFGQVVATCSYD   82 (361)
T ss_pred             ccCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEeeeE-----EecCCcEEEEEecCccccceEEEEecC
Confidence            45788999999999998 68999999999999997654    334444     6799999999996 4568899999999


Q ss_pred             CceEEEeCCCCC--------cceeEEeeeccceEEEEEec--CCCEEEEEecCCeEEEEECCCCceeeEeeccCC-----
Q 016458          229 STARLWDTRVAS--------RAVRTFHGHEGDVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG-----  293 (389)
Q Consensus       229 g~i~i~d~~~~~--------~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----  293 (389)
                      +++.||.-....        .....+....+.|+.+.|.|  -|-.|++++.||.++||+....-.+......+.     
T Consensus        83 rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~  162 (361)
T KOG2445|consen   83 RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI  162 (361)
T ss_pred             CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc
Confidence            999999752110        12334555678899999999  577899999999999999876544433322211     


Q ss_pred             ---CCCCCCeeEEEeCCC---CCEEEEEecC-----CcEEEEEcccce-EEEeecCcCCCCCCCeeEEEECCC----CCe
Q 016458          294 ---ENEIPHVTSIAFSIS---GRLLFAGYSN-----GDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSAD----GSA  357 (389)
Q Consensus       294 ---~~~~~~i~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~----~~~  357 (389)
                         ..+..+..|+.|+|.   .++|++|+.+     +.+.||....+. .......+ ..|..+|++++|.|+    -..
T Consensus       163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L-~d~~dpI~di~wAPn~Gr~y~~  241 (361)
T KOG2445|consen  163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL-PDHTDPIRDISWAPNIGRSYHL  241 (361)
T ss_pred             CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc-CCCCCcceeeeeccccCCceee
Confidence               123445788999974   4588888766     478999876543 33322222 689999999999995    358


Q ss_pred             EEeeeCCCeeEEeecceeccc
Q 016458          358 LCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       358 l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      ||+++.|| |+|    |++..
T Consensus       242 lAvA~kDg-v~I----~~v~~  257 (361)
T KOG2445|consen  242 LAVATKDG-VRI----FKVKV  257 (361)
T ss_pred             EEEeecCc-EEE----EEEee
Confidence            99999999 999    99984

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.89  E-value=1.4e-20  Score=145.90  Aligned_cols=214  Identities=17%  Similarity=0.255  Sum_probs=175.1

Q ss_pred             cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC---eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458           63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN  139 (389)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~  139 (389)
                      +.--..+|+|.+|++|+..+|++.....|.||......   ..++++.|...|+.++|+|..+.|++++.|..-+||...
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            33345689999999999999999999999999876544   678889999999999999999999999999999999985


Q ss_pred             CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (389)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (389)
                      .+    ..+.....+..++...+++.|+|.+ +.|++|+....|.||-++....-.. ...+...+.+.|.+++|+| ++
T Consensus        86 ~~----~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWV-sKhikkPirStv~sldWhp-nn  158 (361)
T KOG1523|consen   86 SG----GTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWV-SKHIKKPIRSTVTSLDWHP-NN  158 (361)
T ss_pred             CC----CeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceeh-hhhhCCccccceeeeeccC-Cc
Confidence            32    3556677778899999999999997 7899999999999998876544322 1222356788999999999 88


Q ss_pred             cEEEEeeCCCceEEEeCC-----CC------------CcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCC
Q 016458          220 RMFVSGSCDSTARLWDTR-----VA------------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG  282 (389)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~-----~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  282 (389)
                      -++++|+.|+..+++..-     ..            +..+..+....+.+..+.|+|+|..|+-.+.|..+.+-|....
T Consensus       159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            899999999999998642     11            1222333345678999999999999999999999999998765


Q ss_pred             c
Q 016458          283 H  283 (389)
Q Consensus       283 ~  283 (389)
                      .
T Consensus       239 ~  239 (361)
T KOG1523|consen  239 S  239 (361)
T ss_pred             c
Confidence            4

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=4.7e-20  Score=161.07  Aligned_cols=298  Identities=16%  Similarity=0.208  Sum_probs=212.7

Q ss_pred             cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC----CCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT----SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS  140 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~  140 (389)
                      .|.-.++|.++||.++++|+|..||.|.+|.--.    ......+.-|...|++++|+++|.+|++|+..+.+.+|.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            4777799999999999999999999999995322    234566778889999999999999999999999999999998


Q ss_pred             CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc------cCCCCCCeeEEEe
Q 016458          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF------QSGHTADVLSVSI  214 (389)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~v~~~~~  214 (389)
                      ++        .+.+..-.++|..+.++|++ .+.+....|..|.+....+......+....      .....+-.+.+++
T Consensus       283 ~~--------kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i  353 (792)
T KOG1963|consen  283 GK--------KQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI  353 (792)
T ss_pred             CC--------cccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEE
Confidence            55        23344456899999999998 567777889999998876654444332111      1223455678888


Q ss_pred             eCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-----------eeccceEEEEEecCCCEEEEEe--------cC--Ce
Q 016458          215 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-----------GHEGDVNTVKFFPDGNRFGTGS--------DD--GT  273 (389)
Q Consensus       215 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~--------~d--g~  273 (389)
                      +| ..+.++-.+..|.|.+||+-+. ..+..+.           .+.-.+++++.+..|.++++.-        .|  -.
T Consensus       354 dp-r~~~~vln~~~g~vQ~ydl~td-~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~  431 (792)
T KOG1963|consen  354 DP-RTNSLVLNGHPGHVQFYDLYTD-STIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS  431 (792)
T ss_pred             cC-CCCceeecCCCceEEEEecccc-ceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence            88 6677888889999999999876 3333332           1223477788888899998864        23  35


Q ss_pred             EEEEECCCCceeeEeeccCCCCCCCCeeEEEeC-CCCC-EEEEEecCCcEEEEEccc------ceEEEeecCcCCCCCCC
Q 016458          274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS-ISGR-LLFAGYSNGDCYVWDTLL------AKVVLNLGSLQNSHEGR  345 (389)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~  345 (389)
                      +++|-......-..+...-...|...+...++. +... ..++++.||.++||-+..      .............|..+
T Consensus       432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~  511 (792)
T KOG1963|consen  432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTP  511 (792)
T ss_pred             EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCc
Confidence            788876654433333222222222234444443 3333 788999999999998832      22222222222458889


Q ss_pred             eeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          346 ITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       346 v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      +++++|+.||. +++.+.|++|.+    ||..+
T Consensus       512 i~a~~fs~dGs-lla~s~~~~Iti----wd~~~  539 (792)
T KOG1963|consen  512 ITALCFSQDGS-LLAVSFDDTITI----WDYDT  539 (792)
T ss_pred             ccchhhcCCCc-EEEEecCCEEEE----ecCCC
Confidence            99999999995 566778899999    99988

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2e-21  Score=151.75  Aligned_cols=272  Identities=13%  Similarity=0.194  Sum_probs=193.0

Q ss_pred             CCCCcccCCCcceeeeecccccCcEEEEEEcC--CCCeEEEEecCCcEEEEeCCCCCeeEEEee--CC-CcEEEEEECCC
Q 016458           46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTS--ERNRIVSASQDGRLIVWNALTSQKTHAIKL--PC-AWVMTCAFSPT  120 (389)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~--~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~--~~-~~v~~~~~~~~  120 (389)
                      ......+++...+.+..+++|...++.+.|..  ....+.+|+.||+|++||++.......+..  +. .+..+++.+.+
T Consensus        49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck  128 (376)
T KOG1188|consen   49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK  128 (376)
T ss_pred             CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc
Confidence            34566788888999999999999999999987  456899999999999999988776655543  22 45777777778


Q ss_pred             CcEEEEecC----CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEE
Q 016458          121 GQSVACGGL----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV  196 (389)
Q Consensus       121 ~~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  196 (389)
                      ++.+++|..    +-.|.+||++..+.     .+......|...|+++.|+|..+++|++|+.||.|.+||+.....-..
T Consensus       129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq-----~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa  203 (376)
T KOG1188|consen  129 KNIIACGTELTRSDASVVLWDVRSEQQ-----LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA  203 (376)
T ss_pred             CCeEEeccccccCceEEEEEEeccccc-----hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhh
Confidence            888888854    67899999987442     144556789999999999999999999999999999999976532221


Q ss_pred             ecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee------------ccceEEEEEecCCCE
Q 016458          197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------------EGDVNTVKFFPDGNR  264 (389)
Q Consensus       197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~  264 (389)
                      +..  ...+...|.++.|..+.-+.+.+-+..+...+|+++.+. +...+...            -..+...-...+...
T Consensus       204 L~~--viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~  280 (376)
T KOG1188|consen  204 LLH--VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS-EETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT  280 (376)
T ss_pred             HHH--hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC-hhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence            110  035667799999997565678888999999999998774 22222111            001111111224455


Q ss_pred             EEEEec-CCeEEEEECC---CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458          265 FGTGSD-DGTCRLFDIR---TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       265 l~~~~~-dg~i~i~d~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (389)
                      ++.++. -|...++-+.   ++.........+ ..+..-|+++.|...+.++++|+.||.+.+|..
T Consensus       281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  281 CALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ-GGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             EEEeccccCceeEEEeeecccccccCcccccc-CCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            555554 5555555443   222222111111 223335888999888999999999999999985

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=4.7e-20  Score=137.59  Aligned_cols=247  Identities=15%  Similarity=0.194  Sum_probs=178.2

Q ss_pred             cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCC---CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD---KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (389)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  187 (389)
                      .|..-+|+|.+++|++|..+|.|.+..+.+-..   ............+|.+++..++|..   .+|++|+. |.|+-|.
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~   87 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWE   87 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeeccC-ceEEEee
Confidence            355668999999999999999999999876321   1112223445589999999999984   45666655 9999998


Q ss_pred             CCCCeeE------EEecCccc--CCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEe
Q 016458          188 ITTGLRT------SVFGGEFQ--SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF  259 (389)
Q Consensus       188 ~~~~~~~------~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~  259 (389)
                      .+.....      .....+.+  ...-..|+++-..|..+.+| .++.|+.++-||++++ +..+.+++|...|.++.--
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R  165 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGR  165 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCC-EEEEEEcCCcceeeeeeec
Confidence            6543221      11111111  11234688899998555554 4557999999999998 8899999999999999985


Q ss_pred             cCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCC-----CCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEe
Q 016458          260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN-----EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN  334 (389)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  334 (389)
                      .....+++|+.||++++||.++++....+.....++     ...+|.+++-  +..++++|+. ..+.+|+++..+....
T Consensus       166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~v  242 (325)
T KOG0649|consen  166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCV  242 (325)
T ss_pred             ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEE
Confidence            555679999999999999999999888876544332     2234566655  4558888754 4799999999988888


Q ss_pred             ecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          335 LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       335 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      +.     -..++..+.|..|  .+++++..+.+.-    |.+.
T Consensus       243 fp-----ipa~v~~v~F~~d--~vl~~G~g~~v~~----~~l~  274 (325)
T KOG0649|consen  243 FP-----IPARVHLVDFVDD--CVLIGGEGNHVQS----YTLN  274 (325)
T ss_pred             Ee-----cccceeEeeeecc--eEEEeccccceee----eeec
Confidence            73     4456778888655  5777776666666    6654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.88  E-value=4.9e-20  Score=140.97  Aligned_cols=297  Identities=15%  Similarity=0.205  Sum_probs=202.1

Q ss_pred             eeeecccccCcEEEEEEcC--C-CCeEEEEec----CCcEEEEeC--CCCCeeEEE-eeCCCcEEEEEECCCC-----cE
Q 016458           59 CCRTLQGHAGKVYSLDWTS--E-RNRIVSASQ----DGRLIVWNA--LTSQKTHAI-KLPCAWVMTCAFSPTG-----QS  123 (389)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~--~-~~~l~~~~~----dg~v~iw~~--~~~~~~~~~-~~~~~~v~~~~~~~~~-----~~  123 (389)
                      .+..+..+- ++.++.|+.  + ..+||.|+.    .+.|.|-.+  .+++.+..- ..|.-+++.+.|.|+.     .+
T Consensus        37 eiy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdl  115 (364)
T KOG0290|consen   37 EIYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDL  115 (364)
T ss_pred             eEEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcch
Confidence            344444433 589999984  2 347888873    456766654  344443332 2466789999999976     34


Q ss_pred             EEEecCCCcEEEEeCCCCCCCCCC--CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee---EEEec
Q 016458          124 VACGGLDSVCSIFNLNSPTDKDGN--LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR---TSVFG  198 (389)
Q Consensus       124 l~~~~~dg~i~vw~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~  198 (389)
                      ||+.  +..+++|.+.........  ......-..+..++++..|+.-.++++.+++-|.+..|||++++..   ...+ 
T Consensus       116 LATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL-  192 (364)
T KOG0290|consen  116 LATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL-  192 (364)
T ss_pred             hhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE-
Confidence            5554  357999999853211000  0011122345679999999998889999999999999999999732   3333 


Q ss_pred             CcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee--ccceEEEEEec-CCCEEEEEecC-CeE
Q 016458          199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH--EGDVNTVKFFP-DGNRFGTGSDD-GTC  274 (389)
Q Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~~~~~~-~~~~l~~~~~d-g~i  274 (389)
                          ..|...|..++|.....++|++.+.||.+++||+|........+...  ..+...++|++ |.+++++-..| ..|
T Consensus       193 ----IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V  268 (364)
T KOG0290|consen  193 ----IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKV  268 (364)
T ss_pred             ----EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceE
Confidence                58999999999998778899999999999999999764333333322  45788899988 56677776654 469


Q ss_pred             EEEECCCCcee-eEeeccCCCCCCCCeeEEEeCCCC-CEEEEEecCCcEEEEEcccceEEE-eecCcCCCCCCCeeEEEE
Q 016458          275 RLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVL-NLGSLQNSHEGRITCLGL  351 (389)
Q Consensus       275 ~i~d~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~  351 (389)
                      .+.|++..... ..+     .+|...|+.++|.|.. ..|++++.|..+.+||+....... .-..+.-.-.+.|+.+.|
T Consensus       269 ~iLDiR~P~tpva~L-----~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~W  343 (364)
T KOG0290|consen  269 VILDIRVPCTPVARL-----RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQW  343 (364)
T ss_pred             EEEEecCCCcceehh-----hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeee
Confidence            99999875433 333     3344469999999964 589999999999999997543200 000001235678999999


Q ss_pred             CC-CCCeEEeeeCCCeeEE
Q 016458          352 SA-DGSALCTGSWDTNLKV  369 (389)
Q Consensus       352 ~~-~~~~l~~~~~dg~i~i  369 (389)
                      ++ .+..++.+.. +.+.|
T Consensus       344 s~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  344 SSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             cccCCCEEEEEec-CeeeE
Confidence            96 4556666554 34433

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.87  E-value=2e-20  Score=149.36  Aligned_cols=262  Identities=16%  Similarity=0.235  Sum_probs=194.1

Q ss_pred             cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCC--------C--------CCeeEEEeeCCCcEEEEEECC
Q 016458           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL--------T--------SQKTHAIKLPCAWVMTCAFSP  119 (389)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~--------~--------~~~~~~~~~~~~~v~~~~~~~  119 (389)
                      .......|..|..+|+++.|+|+|+.||+|+.+|.|.+|...        +        ......+.+|...|..++|+|
T Consensus        54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~  133 (434)
T KOG1009|consen   54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP  133 (434)
T ss_pred             eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence            456777899999999999999999999999999999999765        2        122345567888999999999


Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec-
Q 016458          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG-  198 (389)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-  198 (389)
                      ++.++++++.|..+++||+..+.       ....+..|...+..++|.|-+ +++++-+.|...+.+.+.....+.... 
T Consensus       134 d~~~l~s~s~dns~~l~Dv~~G~-------l~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~  205 (434)
T KOG1009|consen  134 DSNFLVSGSVDNSVRLWDVHAGQ-------LLAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGL  205 (434)
T ss_pred             CCceeeeeeccceEEEEEeccce-------eEeeccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeee
Confidence            99999999999999999999876       788889999999999999987 789998888877777766544333221 


Q ss_pred             ----CcccC-------------CCCCCeeEEEeeCCCCcEEEEeeC----CC-----ceEEEeCCCCCcceeEEeeeccc
Q 016458          199 ----GEFQS-------------GHTADVLSVSISGSNSRMFVSGSC----DS-----TARLWDTRVASRAVRTFHGHEGD  252 (389)
Q Consensus       199 ----~~~~~-------------~~~~~v~~~~~~~~~~~~l~~~~~----dg-----~i~i~d~~~~~~~~~~~~~~~~~  252 (389)
                          .....             .-......++|+| ++.++++...    ++     ..++|+-....++...+.....+
T Consensus       206 ~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~  284 (434)
T KOG1009|consen  206 DIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKP  284 (434)
T ss_pred             eEeeecccCCCCcceeeeeecCchhhhhhhcccCC-CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcc
Confidence                00000             1112345677888 7778876432    22     33566555445666666666666


Q ss_pred             eEEEEEec------------------CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEE
Q 016458          253 VNTVKFFP------------------DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA  314 (389)
Q Consensus       253 i~~~~~~~------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  314 (389)
                      ...+.|+|                  -+-.++.++. ..|++||..+..++......+-    ..|+.++|++||.+++.
T Consensus       285 ~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy----~~iTDiaws~dg~~l~v  359 (434)
T KOG1009|consen  285 ALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHY----SAITDIAWSDDGSVLLV  359 (434)
T ss_pred             eEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeee----eeecceeecCCCcEEEE
Confidence            66666665                  1223455554 5899999988777776654333    36999999999999999


Q ss_pred             EecCCcEEEEEcccceE
Q 016458          315 GYSNGDCYVWDTLLAKV  331 (389)
Q Consensus       315 ~~~dg~i~i~d~~~~~~  331 (389)
                      .+.||...+.-+...+.
T Consensus       360 SS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  360 SSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             eccCCceEEEEEcchhc
Confidence            99999888777665443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=5.5e-20  Score=147.76  Aligned_cols=196  Identities=21%  Similarity=0.280  Sum_probs=153.0

Q ss_pred             EEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc
Q 016458          162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR  241 (389)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  241 (389)
                      .+++|+.+| ..+++++.||++|+|+..+...+...     ..|...|.++.|+| ++++|++-+.| ..++|+.+++ .
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e-----~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g-~  218 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEE-----IAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTG-A  218 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhh-----HhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccC-c
Confidence            778999987 78999999999999998877776666     68999999999999 99999999999 9999999988 4


Q ss_pred             ceeEEee--eccceEEEEEecCC---CE--EEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEE
Q 016458          242 AVRTFHG--HEGDVNTVKFFPDG---NR--FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA  314 (389)
Q Consensus       242 ~~~~~~~--~~~~i~~~~~~~~~---~~--l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  314 (389)
                      .+....+  .+.....+.|+.++   .+  ++....-+.|+.||+.....-..+...........|++++.+++|++++.
T Consensus       219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al  298 (398)
T KOG0771|consen  219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL  298 (398)
T ss_pred             hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence            4444432  23346677888766   22  23333456677777654433211111111122224999999999999999


Q ss_pred             EecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          315 GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       315 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      |+.||.|-|++..+.+.+...+   +.|...|+.+.|+||.+++++.+.|....|
T Consensus       299 GT~dGsVai~~~~~lq~~~~vk---~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v  350 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQRLQYVK---EAHLGFVTGLTFSPDSRYLASVSSDNEAAV  350 (398)
T ss_pred             eccCCcEEEEEeceeeeeEeeh---hhheeeeeeEEEcCCcCcccccccCCceeE
Confidence            9999999999999888888776   799999999999999999999999998888

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=8.6e-19  Score=153.31  Aligned_cols=313  Identities=15%  Similarity=0.212  Sum_probs=221.4

Q ss_pred             CcccCCCcceeeeecccccCcEEEEEEcCCC---CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECC----CC
Q 016458           49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSER---NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP----TG  121 (389)
Q Consensus        49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~---~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~----~~  121 (389)
                      ...++..+..+.+.|.+|..+++.+.+.|..   .++++++.||.|++||...+..+.++..+.. +..+.+.|    ..
T Consensus        39 V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s  117 (792)
T KOG1963|consen   39 VKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP-VHALVYKPAQADIS  117 (792)
T ss_pred             EEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc-eeEEEechhHhCcc
Confidence            4456667788999999999999999999854   3678999999999999999999988876543 44433322    11


Q ss_pred             cEEEEecCCCc------------EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          122 QSVACGGLDSV------------CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       122 ~~l~~~~~dg~------------i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                      ..+..+..+..            ++-+.+.+..     .........|.. -.++.+++.+  .+.....+..+.+|+..
T Consensus       118 ~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~-----~~~~d~~~~~~~-~~~I~~~~~g--e~~~i~~~~~~~~~~v~  189 (792)
T KOG1963|consen  118 ANVYVSVEDYSILTTFSKKLSKQSSRFVLATFD-----SAKGDFLKEHQE-PKSIVDNNSG--EFKGIVHMCKIHIYFVP  189 (792)
T ss_pred             ceeEeecccceeeeecccccccceeeeEeeecc-----ccchhhhhhhcC-CccEEEcCCc--eEEEEEEeeeEEEEEec
Confidence            11212222211            1111111100     001111222222 4567777765  35555667789999988


Q ss_pred             CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC---CCcceeEEeeeccceEEEEEecCCCEEE
Q 016458          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV---ASRAVRTFHGHEGDVNTVKFFPDGNRFG  266 (389)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~  266 (389)
                      .+. ...........|.-.+++.+++| +++++++|..||.|.+|.--.   .......+.-|...|.+++|+++|.+|+
T Consensus       190 ~~~-~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~Ll  267 (792)
T KOG1963|consen  190 KHT-KHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLL  267 (792)
T ss_pred             ccc-eeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEe
Confidence            866 33333333356777789999999 999999999999999996432   2245667788999999999999999999


Q ss_pred             EEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCC-----
Q 016458          267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS-----  341 (389)
Q Consensus       267 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----  341 (389)
                      +|+..|.+.+|.+.+++  +.+.+..+    ++|..+.++||+.+.+....|+.|.+....+.....++..+...     
T Consensus       268 SGG~E~VLv~Wq~~T~~--kqfLPRLg----s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k  341 (792)
T KOG1963|consen  268 SGGREGVLVLWQLETGK--KQFLPRLG----SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTK  341 (792)
T ss_pred             ecccceEEEEEeecCCC--cccccccC----CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccc
Confidence            99999999999999987  33333222    25999999999999999999999999988766555554332222     


Q ss_pred             --CCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          342 --HEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       342 --~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                        ..+-.+.++++|.-+.++-.+..|.|.+    ||+-+.+..
T Consensus       342 ~~~~~l~t~~~idpr~~~~vln~~~g~vQ~----ydl~td~~i  380 (792)
T KOG1963|consen  342 TRPQSLTTGVSIDPRTNSLVLNGHPGHVQF----YDLYTDSTI  380 (792)
T ss_pred             ccccccceeEEEcCCCCceeecCCCceEEE----Eecccccee
Confidence              3455788899997778888999999999    988776543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.86  E-value=5.3e-18  Score=144.38  Aligned_cols=262  Identities=11%  Similarity=0.122  Sum_probs=168.2

Q ss_pred             ceeeeecccccCcEEEEEEcCCCCeEEEEe-cCCcEEEEeCCC-CCee--EEEeeCCCcEEEEEECCCCcEEEEecC-CC
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSAS-QDGRLIVWNALT-SQKT--HAIKLPCAWVMTCAFSPTGQSVACGGL-DS  131 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~-~dg~v~iw~~~~-~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg  131 (389)
                      +....++. +.+....++++|++++|++++ .++.|.+|++.. +...  .... .......++|+|+++++++++. ++
T Consensus        25 l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~  102 (330)
T PRK11028         25 LTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNAN  102 (330)
T ss_pred             eeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCC
Confidence            34555554 345677899999999887664 578899999863 3322  2222 2235678999999999888764 88


Q ss_pred             cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEe-cCcccCCCCCCee
Q 016458          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF-GGEFQSGHTADVL  210 (389)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~v~  210 (389)
                      .|.+|+++.....   ........ +......++++|++..++++...++.|.+||+.+...+... .............
T Consensus       103 ~v~v~~~~~~g~~---~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~  178 (330)
T PRK11028        103 CVSVSPLDKDGIP---VAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPR  178 (330)
T ss_pred             eEEEEEECCCCCC---CCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCc
Confidence            9999999742211   11122222 22345678899998555566677899999999764322110 0000011234567


Q ss_pred             EEEeeCCCCcEEEEeeC-CCceEEEeCCCCC---cceeEEeeec------cceEEEEEecCCCEEEEEe-cCCeEEEEEC
Q 016458          211 SVSISGSNSRMFVSGSC-DSTARLWDTRVAS---RAVRTFHGHE------GDVNTVKFFPDGNRFGTGS-DDGTCRLFDI  279 (389)
Q Consensus       211 ~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~---~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~  279 (389)
                      .+.|+| ++++++++.. ++.|.+||++...   ..+..+..+.      .....+.++|++++++++. .++.|.+|++
T Consensus       179 ~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        179 HMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV  257 (330)
T ss_pred             eEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence            899999 7777766665 8999999997421   1222222111      1233688999999999885 4789999998


Q ss_pred             CCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec-CCcEEEEEcc
Q 016458          280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTL  327 (389)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~  327 (389)
                      ........+.......  .....+.++|+|++|++++. ++.|.+|++.
T Consensus       258 ~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        258 SEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             eCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            6543222221111110  12567899999999998775 8899999875

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.86  E-value=2.1e-19  Score=148.75  Aligned_cols=277  Identities=21%  Similarity=0.286  Sum_probs=189.3

Q ss_pred             cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeE----EEeeCCCcEEEEEE-----CCCCcEEEEecCCCcEEEEeCC
Q 016458           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH----AIKLPCAWVMTCAF-----SPTGQSVACGGLDSVCSIFNLN  139 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~----~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~vw~~~  139 (389)
                      .+....++-.|++|+-.-. ..+.+|+...+..+.    ..........|-+|     .|.+--++.|-.-|.|.+.|..
T Consensus       125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~  203 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI  203 (636)
T ss_pred             ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence            3445555556667665543 368888876432221    11111222334444     3466678888888999998876


Q ss_pred             CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (389)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (389)
                      ....   .........-.+..|+|+.|.|.++..++.+-.+|.+++||....           .....  .+....+ .+
T Consensus       204 ~~~~---sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----------~~~t~--p~~~~~k-~~  266 (636)
T KOG2394|consen  204 NFEV---SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----------CGATA--PSYQALK-DG  266 (636)
T ss_pred             hhHH---HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----------ccCCC--CcccccC-CC
Confidence            5210   000011111234789999999999899999999999999997211           01111  1111112 33


Q ss_pred             cEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458          220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (389)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (389)
                      ..+....       |--.....++..+.--.+.|+.++|+|||++||+.+.||.++|||..+.+.+..+....+     .
T Consensus       267 ~~f~i~t-------~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-----G  334 (636)
T KOG2394|consen  267 DQFAILT-------SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG-----G  334 (636)
T ss_pred             CeeEEee-------eeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc-----c
Confidence            3443322       211122245556665667899999999999999999999999999998877766655444     3


Q ss_pred             eeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC-------------------------
Q 016458          300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-------------------------  354 (389)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------------  354 (389)
                      ..|++|||||+||++|++|..|.||.+..++.+..-    ++|.+.|+.++|+|-                         
T Consensus       335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG----qGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~  410 (636)
T KOG2394|consen  335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG----QGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFE  410 (636)
T ss_pred             eEEEEEcCCccEEEecCCcceEEEEEeccceEEEec----cccccceeeEeecccccccccccccccccccccchhcccc
Confidence            899999999999999999999999999999999887    899999999999830                         


Q ss_pred             ----------C-------------CeEEeeeCCCeeEEeecceecccCcccC
Q 016458          355 ----------G-------------SALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       355 ----------~-------------~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                                +             -.+.+.+.|-.+.+    ||+.+..+.+
T Consensus       411 ~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL----WDlteD~L~~  458 (636)
T KOG2394|consen  411 IRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL----WDLTEDVLVP  458 (636)
T ss_pred             cccCCCCCcCCCcccccccccceEEEeecccccceEEE----Eecchhhccc
Confidence                      1             14677888999999    9999887765

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.86  E-value=1.9e-19  Score=157.66  Aligned_cols=236  Identities=15%  Similarity=0.169  Sum_probs=163.7

Q ss_pred             CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC---CcEEEEeCCCCCCCCCCCcceeeecccccceEEE
Q 016458           88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCC  164 (389)
Q Consensus        88 dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~  164 (389)
                      +..|.+||..... ...+..+...+...+|+|+|+.|+.++.+   ..|++||+.++..     .....+.+|   ...+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-----~~l~~~~g~---~~~~  253 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-----KVVASFRGH---NGAP  253 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-----EEEecCCCc---cCce
Confidence            4689999976544 55566677789999999999999887643   4699999976431     122223333   3467


Q ss_pred             EEeeCCCcEEEEeeCCCeEEE--EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE-EEeeCCCceEEEeCCCCCc
Q 016458          165 QYVPDEDTHLITSSGDQTCVL--WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASR  241 (389)
Q Consensus       165 ~~~~~~~~~l~~~~~dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~  241 (389)
                      +|+|++..++++.+.+|.+.+  ||+.++.... +     ..+...+.+..|+| +++.| +++..+|...+|+++....
T Consensus       254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-l-----t~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~  326 (429)
T PRK01742        254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-L-----TSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGG  326 (429)
T ss_pred             eECCCCCEEEEEEecCCcEEEEEEECCCCCeEe-e-----ccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence            999998544445556776555  4666665433 3     34556678899999 56554 4555678888988765433


Q ss_pred             ceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcE
Q 016458          242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC  321 (389)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  321 (389)
                      ....+ .+..  ....|+|+|++|+..+.++ +.+||+.++........ . .     .....|+|+|++|+.++.+|..
T Consensus       327 ~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~-~-----~~~~~~sPdG~~i~~~s~~g~~  395 (429)
T PRK01742        327 GASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-F-L-----DESPSISPNGIMIIYSSTQGLG  395 (429)
T ss_pred             CeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-C-C-----CCCceECCCCCEEEEEEcCCCc
Confidence            33333 3333  4578999999998888765 55699988765432211 1 1     3457899999999999999988


Q ss_pred             EEEEcc--cceEEEeecCcCCCCCCCeeEEEECCC
Q 016458          322 YVWDTL--LAKVVLNLGSLQNSHEGRITCLGLSAD  354 (389)
Q Consensus       322 ~i~d~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (389)
                      .+|++.  ++.....+    ..|.+.+...+|+|-
T Consensus       396 ~~l~~~~~~G~~~~~l----~~~~g~~~~p~wsp~  426 (429)
T PRK01742        396 KVLQLVSADGRFKARL----PGSDGQVKFPAWSPY  426 (429)
T ss_pred             eEEEEEECCCCceEEc----cCCCCCCCCcccCCC
Confidence            888753  57777777    677888999999984

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2e-18  Score=136.27  Aligned_cols=288  Identities=17%  Similarity=0.220  Sum_probs=189.9

Q ss_pred             cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe-eCCCcEEEEEECCCC-cEEEEecCCCcEEEEeCCCCCCCCC
Q 016458           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDG  146 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~  146 (389)
                      .+..++|++.-..+|++..|-.|++||-.. .....++ .....|+|++|-|.+ +.|++|+.. -|.+|..+.......
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r  177 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANR  177 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccc
Confidence            578899999877889999999999999766 3333343 334679999999954 566667654 589998876432211


Q ss_pred             C-------CcceeeecccccceEEEEEeeCCCcEEEEee-CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458          147 N-------LPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN  218 (389)
Q Consensus       147 ~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  218 (389)
                      .       ........+| .+|+++.|.+|| ..+++++ .|..|.|||..++..+...     ....+.+.-+.|+| +
T Consensus       178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~-----~~glgg~slLkwSP-d  249 (445)
T KOG2139|consen  178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLI-----PKGLGGFSLLKWSP-D  249 (445)
T ss_pred             ccccccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCccccc-----ccCCCceeeEEEcC-C
Confidence            1       0111223344 789999999998 4566555 5789999999999887765     35567789999999 8


Q ss_pred             CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEee---------
Q 016458          219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY---------  289 (389)
Q Consensus       219 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------  289 (389)
                      +++|++++.|+..++|+........+-.. -.+.|...+|+|+|.+|+..+. |.-++|.+........+.         
T Consensus       250 gd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~l  327 (445)
T KOG2139|consen  250 GDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVL  327 (445)
T ss_pred             CCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeee
Confidence            88999999999999997665433333333 3458999999999998765543 334455443211111110         


Q ss_pred             ------c----cCCCCCCCCeeEEEeCCCCCEEEEEecCC--------cEEEEEcccceEEEeecCcCCCCCCCeeEEEE
Q 016458          290 ------Q----QHGENEIPHVTSIAFSISGRLLFAGYSNG--------DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  351 (389)
Q Consensus       290 ------~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  351 (389)
                            .    ....-....+.+++|.|.|.+|++....+        .|.+||.+....+.-...- ........-++|
T Consensus       328 liaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg-~i~ge~P~~IsF  406 (445)
T KOG2139|consen  328 LIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCG-MIGGEYPAYISF  406 (445)
T ss_pred             eeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecc-cccCCCCceEEe
Confidence                  0    00011133578999999999999976544        3667887654443322110 011122455666


Q ss_pred             CC---CCCeEEeeeCCCeeEE
Q 016458          352 SA---DGSALCTGSWDTNLKV  369 (389)
Q Consensus       352 ~~---~~~~l~~~~~dg~i~i  369 (389)
                      +|   ++.+|..+=+.|.+.-
T Consensus       407 ~pl~n~g~lLsiaWsTGriq~  427 (445)
T KOG2139|consen  407 GPLKNEGRLLSIAWSTGRIQR  427 (445)
T ss_pred             eecccCCcEEEEEeccCceEe
Confidence            65   5777777777777766

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.85  E-value=7.6e-18  Score=130.78  Aligned_cols=280  Identities=14%  Similarity=0.170  Sum_probs=185.9

Q ss_pred             EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE-EecCC------CcEEEEeCCCCC
Q 016458           70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA-CGGLD------SVCSIFNLNSPT  142 (389)
Q Consensus        70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d------g~i~vw~~~~~~  142 (389)
                      ...++|+.|...+++|..+| .+||+.+.-+.....+.+.+.+.-+...-..++|+ +|+.+      ..+.|||=....
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~   86 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER   86 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence            44599999999999998887 89999877554433333333222222222344444 34333      469999932211


Q ss_pred             CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC-CCeeEEEecCcccCCCCCCeeEEEeeCCCCcE
Q 016458          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRM  221 (389)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  221 (389)
                             ....+ ....+|.++.+.++   .+++. ..+.|.+|... +.+.+..+..   ...+..+.+++-.. +..+
T Consensus        87 -------~i~el-~f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~~~et---~~NPkGlC~~~~~~-~k~~  150 (346)
T KOG2111|consen   87 -------CIIEL-SFNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLHVIET---RSNPKGLCSLCPTS-NKSL  150 (346)
T ss_pred             -------EEEEE-EeccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhheeeeec---ccCCCceEeecCCC-CceE
Confidence                   22222 35678999999874   24443 45789999988 4455555532   12233344444443 3344


Q ss_pred             EEE-eeCCCceEEEeCCCCCc-ceeEEeeeccceEEEEEecCCCEEEEEecCCe-EEEEECCCCceeeEeeccCCCCCCC
Q 016458          222 FVS-GSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGHQLQVYYQQHGENEIP  298 (389)
Q Consensus       222 l~~-~~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~  298 (389)
                      |+. |..-|.|.|-|+..... ....+.+|.+.|.|++.+-+|..+|+++..|+ |+|||..++..+..+......   .
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~---A  227 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR---A  227 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch---h
Confidence            443 55679999999987633 35788899999999999999999999999997 899999999999998775433   3


Q ss_pred             CeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEe-----------ecCcC---------CCCCCCeeEEEECCCCCeE
Q 016458          299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN-----------LGSLQ---------NSHEGRITCLGLSADGSAL  358 (389)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------~~~~~---------~~~~~~v~~~~~~~~~~~l  358 (389)
                      .|.+++|||+..+|++++..|+++||.+........           +..+.         .-..++..-++|-.+.+.+
T Consensus       228 ~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsv  307 (346)
T KOG2111|consen  228 DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTV  307 (346)
T ss_pred             eEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeE
Confidence            499999999999999999999999998865321111           10000         0112345556676665667


Q ss_pred             EeeeCCCeeEE
Q 016458          359 CTGSWDTNLKV  369 (389)
Q Consensus       359 ~~~~~dg~i~i  369 (389)
                      +..+.||..+=
T Consensus       308 i~i~~Dgsy~k  318 (346)
T KOG2111|consen  308 IAICADGSYYK  318 (346)
T ss_pred             EEEEeCCcEEE
Confidence            77777776543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.85  E-value=3.5e-18  Score=135.22  Aligned_cols=238  Identities=13%  Similarity=0.142  Sum_probs=178.6

Q ss_pred             CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC--CeEEEEe
Q 016458          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWD  187 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iwd  187 (389)
                      ..+..+.|+.+...|..|+.|| .++|+.+...       ...........|.-+-|+..   +++..+.+  ..+++++
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~-------k~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~   74 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFE-------KCFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVH   74 (391)
T ss_pred             cceeeeeeccceeEEEccCCCc-eeEEecCchH-------HhhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEE
Confidence            3466777999999999999998 4788876522       11111122334555666653   44444433  4699999


Q ss_pred             CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee---eccceEEEEEecCCCE
Q 016458          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---HEGDVNTVKFFPDGNR  264 (389)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~  264 (389)
                      +..+..+..+      .....|.++.++.   +.|+++-.+ .|+|||+++. +.+.++..   +...+.++++++.+.+
T Consensus        75 ~Kk~~~ICe~------~fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~M-klLhTI~t~~~n~~gl~AlS~n~~n~y  143 (391)
T KOG2110|consen   75 FKKKTTICEI------FFPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDM-KLLHTIETTPPNPKGLCALSPNNANCY  143 (391)
T ss_pred             cccCceEEEE------ecCCceEEEEEcc---ceEEEEEcc-cEEEEecccc-eeehhhhccCCCccceEeeccCCCCce
Confidence            9988888776      5667899999863   445555544 4999999988 66665543   4445666666667778


Q ss_pred             EEEEe--cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCc-EEEEEcccceEEEeecCcCCC
Q 016458          265 FGTGS--DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD-CYVWDTLLAKVVLNLGSLQNS  341 (389)
Q Consensus       265 l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~  341 (389)
                      ++.-+  ..|.|.+||+.+-+....+..+.+     ++.+++|+++|.+||+++..|+ ||||.+.+|+.+.+++.-  .
T Consensus       144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~-----~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG--~  216 (391)
T KOG2110|consen  144 LAYPGSTTSGDVVLFDTINLQPVNTINAHKG-----PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG--T  216 (391)
T ss_pred             EEecCCCCCceEEEEEcccceeeeEEEecCC-----ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC--c
Confidence            88654  568999999999988888876555     4999999999999999999996 689999999999999642  2


Q ss_pred             CCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458          342 HEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       342 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~  380 (389)
                      -...|.+++|+|++++|++.|..++|.|    ++++...
T Consensus       217 ~~~~IySL~Fs~ds~~L~~sS~TeTVHi----FKL~~~~  251 (391)
T KOG2110|consen  217 YPVSIYSLSFSPDSQFLAASSNTETVHI----FKLEKVS  251 (391)
T ss_pred             eeeEEEEEEECCCCCeEEEecCCCeEEE----EEecccc
Confidence            2457899999999999999999999999    8887654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.85  E-value=5.4e-20  Score=152.19  Aligned_cols=208  Identities=20%  Similarity=0.348  Sum_probs=169.0

Q ss_pred             CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccccc
Q 016458           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG  159 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  159 (389)
                      ..|+.++.||.+.+.+ ..++....+..|.+.+.+-.|+|+|.-|++++.||.|++|.-...        +..++.....
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--------LRStl~Q~~~  146 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--------LRSTVVQNEE  146 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--------HHHHHhhcCc
Confidence            4788889999999988 667888889999999999999999999999999999999997652        3444555678


Q ss_pred             ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCC
Q 016458          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA  239 (389)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  239 (389)
                      +|.|++|.|+..+.+++.+  +.+.|=.+.....+...     ..|.+-|.++.|++ ..+++++|++|-..++||..  
T Consensus       147 ~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~W-----kAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~--  216 (737)
T KOG1524|consen  147 SIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRW-----RAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQ--  216 (737)
T ss_pred             eeEEEEECCCCCceEEecC--CeEEEeecccccceeEE-----eccCcEEEEeecCc-cccceeecCCceeEEeeccc--
Confidence            9999999999877777655  45666666666666666     78999999999999 88999999999999999976  


Q ss_pred             CcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC
Q 016458          240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG  319 (389)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (389)
                      +..+..-..|+.+|++++|.|+ +.++.++.+ ++++=                ....+.|..++||+||..+++|+..|
T Consensus       217 G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~----------------~p~~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  217 GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFS----------------SPRVGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             CcccccCChhccceeeeeeccc-cceeeeeee-eeeec----------------CCCccceEEEEEcCCCceeeccccCc
Confidence            4677777889999999999999 566666543 44411                11223489999999999999999999


Q ss_pred             cEEEE
Q 016458          320 DCYVW  324 (389)
Q Consensus       320 ~i~i~  324 (389)
                      .+.+-
T Consensus       279 ~v~~A  283 (737)
T KOG1524|consen  279 QLIVA  283 (737)
T ss_pred             eEEEe
Confidence            87653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.8e-19  Score=142.54  Aligned_cols=265  Identities=16%  Similarity=0.179  Sum_probs=190.3

Q ss_pred             EEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeE
Q 016458          104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC  183 (389)
Q Consensus       104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  183 (389)
                      -+..|.+.|+++.|+.++++|++|+.|..+++|+++..-......++...-..|...|.|++|...+ ..+++|+.+++|
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~V  129 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWGTV  129 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-eeEecCCCccee
Confidence            3457889999999999999999999999999999876332212222333334567899999999875 789999999999


Q ss_pred             EEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe--eeccceEEEEEec-
Q 016458          184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFP-  260 (389)
Q Consensus       184 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~-  260 (389)
                      ..-|+++.+.+..+..   ....+.|+.+..+| -.+.|++.+.++.|.+||.+....+...+.  ........+.|+| 
T Consensus       130 I~HDiEt~qsi~V~~~---~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~  205 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANE---NNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE  205 (609)
T ss_pred             Eeeecccceeeeeecc---cCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence            9999999998888732   23445899999999 578899999999999999997743443332  2344578899999 


Q ss_pred             CCCEEEEEecCCeEEEEECCCCceeeE-eeccCCC-CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE-EEeecC
Q 016458          261 DGNRFGTGSDDGTCRLFDIRTGHQLQV-YYQQHGE-NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV-VLNLGS  337 (389)
Q Consensus       261 ~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~  337 (389)
                      ...+|++.+..+-+-+||.+....... .....+. .......++.|+|+|+.+.+--....-.+||+.+..+ +..+..
T Consensus       206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~  285 (609)
T KOG4227|consen  206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH  285 (609)
T ss_pred             CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence            556788889999999999986543211 1111111 1111246788999999888776655667788776333 333310


Q ss_pred             cC--CCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          338 LQ--NSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       338 ~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      -.  ......+.+++|..|.. +++|+.+-.|++    |.+..
T Consensus       286 N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~----WklP~  323 (609)
T KOG4227|consen  286 NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHI----WKLPR  323 (609)
T ss_pred             CCCcceeeeeeeeeeeeccee-eeccCcccceEE----EecCC
Confidence            00  01123577888876654 899999999999    99864

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.84  E-value=7.5e-19  Score=136.97  Aligned_cols=281  Identities=16%  Similarity=0.172  Sum_probs=197.7

Q ss_pred             EEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEe-cCCCcEEEEeCCCCCCCCCCCcc
Q 016458           72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPV  150 (389)
Q Consensus        72 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~  150 (389)
                      -..|||+|+++|+++.- .+.|-|..+.+..+.+.. -..|..+.|..+.-+++++ ..++.|.+|++..+.       .
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-------w   83 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-------W   83 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecce-------e
Confidence            35799999999999876 788888877665544433 2457888999888777665 568899999998754       4


Q ss_pred             eeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC---
Q 016458          151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---  227 (389)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---  227 (389)
                      ...+......+..++|+|+|..+|.+...+-.|.+|.+.+......-      -....+..++|+| ++++.+..+.   
T Consensus        84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~------~pK~~~kg~~f~~-dg~f~ai~sRrDC  156 (447)
T KOG4497|consen   84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP------HPKTNVKGYAFHP-DGQFCAILSRRDC  156 (447)
T ss_pred             EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec------ccccCceeEEECC-CCceeeeeecccH
Confidence            55566667889999999999888888889999999999987765543      2333457778887 6666555432   


Q ss_pred             ---------------------------------CCceEEEeCCCCCcceeEEeee-ccceEEEEEecCCCEEEEEecCCe
Q 016458          228 ---------------------------------DSTARLWDTRVASRAVRTFHGH-EGDVNTVKFFPDGNRFGTGSDDGT  273 (389)
Q Consensus       228 ---------------------------------dg~i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~  273 (389)
                                                       +..+.+||.--.   ...+.-| .-.+..++|+|.+++|++|+.|+.
T Consensus       157 kdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le---ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~  233 (447)
T KOG4497|consen  157 KDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE---YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQM  233 (447)
T ss_pred             HHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh---heeeeeeeccceeEEEeccccceEEeeccchh
Confidence                                             223445553211   1111112 246888999999999999999999


Q ss_pred             EEEEECCCCceeeEee-------------------------------------------------------------ccC
Q 016458          274 CRLFDIRTGHQLQVYY-------------------------------------------------------------QQH  292 (389)
Q Consensus       274 i~i~d~~~~~~~~~~~-------------------------------------------------------------~~~  292 (389)
                      +++.+--+.+....+.                                                             ...
T Consensus       234 lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD  313 (447)
T KOG4497|consen  234 LRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTD  313 (447)
T ss_pred             hhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCC
Confidence            8886532221111110                                                             000


Q ss_pred             CCCCCCCeeEEEeCCCCCEEEEEecC--CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEe
Q 016458          293 GENEIPHVTSIAFSISGRLLFAGYSN--GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVN  370 (389)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  370 (389)
                      .++....+.-++|++|..|+++-.+.  +.+-+||++..+....+     ....+|....|+|....|+.+.....+++ 
T Consensus       314 ~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-----iQk~piraf~WdP~~prL~vctg~srLY~-  387 (447)
T KOG4497|consen  314 FPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-----IQKHPIRAFEWDPGRPRLVVCTGKSRLYF-  387 (447)
T ss_pred             CCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-----hhccceeEEEeCCCCceEEEEcCCceEEE-
Confidence            01222346789999999999987543  57999999887776655     34568999999999888888887777888 


Q ss_pred             ecceecccCc
Q 016458          371 LGFWRVQEGA  380 (389)
Q Consensus       371 ~~~W~~~~~~  380 (389)
                         |...-..
T Consensus       388 ---W~psg~~  394 (447)
T KOG4497|consen  388 ---WAPSGPR  394 (447)
T ss_pred             ---EcCCCce
Confidence               9876543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.84  E-value=1e-16  Score=135.95  Aligned_cols=286  Identities=16%  Similarity=0.133  Sum_probs=185.9

Q ss_pred             EEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccce
Q 016458           82 IVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV  161 (389)
Q Consensus        82 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v  161 (389)
                      +++-..+|.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+       ....+... ...
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-------~v~~i~~G-~~~   80 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-------VVATIKVG-GNP   80 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-------EEEEEE-S-SEE
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-------EEEEEecC-CCc
Confidence            3456678999999999999999998766555567899999999999999999999999855       55555543 346


Q ss_pred             EEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccC--CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCC
Q 016458          162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS--GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA  239 (389)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  239 (389)
                      ..++++++|...+++...++.+.++|.++.+.+..++.....  .....+..+..+|....++++--..+.|.+.|....
T Consensus        81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~  160 (369)
T PF02239_consen   81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP  160 (369)
T ss_dssp             EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred             ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence            789999998544455567999999999999988887432111  134567788888844445555555688988898776


Q ss_pred             CcceeEEeeeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCceeeEeeccCCC------------------------
Q 016458          240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGE------------------------  294 (389)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~------------------------  294 (389)
                      ..................|+|++++++++ ..++.|-++|..+++....+......                        
T Consensus       161 ~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~  240 (369)
T PF02239_consen  161 KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGY  240 (369)
T ss_dssp             SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSS
T ss_pred             cccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccc
Confidence            33333343345567889999999987665 46678999998877655433211000                        


Q ss_pred             --------------------------CCCCCeeEEEeCCCCCEEEEE----ecCCcEEEEEcccceEEEeecCcCCCCCC
Q 016458          295 --------------------------NEIPHVTSIAFSISGRLLFAG----YSNGDCYVWDTLLAKVVLNLGSLQNSHEG  344 (389)
Q Consensus       295 --------------------------~~~~~i~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (389)
                                                ....+ ..+..+|+++++.+.    ...+.|.++|..+.+....+.   .....
T Consensus       241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~---~~~~~  316 (369)
T PF02239_consen  241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT---PGPGK  316 (369)
T ss_dssp             SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH---HHHT-
T ss_pred             eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe---ccCCC
Confidence                                      00111 345668999999987    445799999999998887773   22223


Q ss_pred             CeeEEEECCCCCeEEeeeCCC--eeEEeecceecccCcccC
Q 016458          345 RITCLGLSADGSALCTGSWDT--NLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       345 ~v~~~~~~~~~~~l~~~~~dg--~i~i~~~~W~~~~~~~~~  383 (389)
                      .+..+.|++||+.+..+..++  .|.|    +|..+.++..
T Consensus       317 ~~~h~ef~~dG~~v~vS~~~~~~~i~v----~D~~Tl~~~~  353 (369)
T PF02239_consen  317 RVVHMEFNPDGKEVWVSVWDGNGAIVV----YDAKTLKEKK  353 (369)
T ss_dssp             -EEEEEE-TTSSEEEEEEE--TTEEEE----EETTTTEEEE
T ss_pred             cEeccEECCCCCEEEEEEecCCCEEEE----EECCCcEEEE
Confidence            589999999999877666554  5999    9999887654

...

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.84  E-value=1.2e-19  Score=153.13  Aligned_cols=242  Identities=16%  Similarity=0.238  Sum_probs=181.5

Q ss_pred             CCeEEE--EecCCcEEEEeCCCCCeeE--EEe--eCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcce
Q 016458           79 RNRIVS--ASQDGRLIVWNALTSQKTH--AIK--LPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS  151 (389)
Q Consensus        79 ~~~l~~--~~~dg~v~iw~~~~~~~~~--~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  151 (389)
                      ..++|+  ++..|.|-||++.....+-  .+.  .....|+.+.|.| |...|++++.||.|++|.+..+..........
T Consensus       591 ~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe  670 (1012)
T KOG1445|consen  591 NKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPE  670 (1012)
T ss_pred             cceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcc
Confidence            344443  4567899999987643321  111  2345699999999 78899999999999999999887777777788


Q ss_pred             eeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCce
Q 016458          152 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA  231 (389)
Q Consensus       152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  231 (389)
                      ..+..|...|+++.|+|--...|++++.|-+|++||+.++.....+     .+|.+.|..++|+| +++.+++.+.||+|
T Consensus       671 ~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l-----~gHtdqIf~~AWSp-dGr~~AtVcKDg~~  744 (1012)
T KOG1445|consen  671 KILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL-----VGHTDQIFGIAWSP-DGRRIATVCKDGTL  744 (1012)
T ss_pred             eeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhee-----ccCcCceeEEEECC-CCcceeeeecCceE
Confidence            8999999999999999987788999999999999999999988888     89999999999999 99999999999999


Q ss_pred             EEEeCCCCCcceeEEeeec-cceEEEEEecCCCEEEEEecCC----eEEEEECCCCc--eeeEeeccCCCCCCCCeeEEE
Q 016458          232 RLWDTRVASRAVRTFHGHE-GDVNTVKFFPDGNRFGTGSDDG----TCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIA  304 (389)
Q Consensus       232 ~i~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~  304 (389)
                      ++|+.++..+++..-.+.. ..--.+.|--+|+++++.+.|.    .|.+||..+-.  .+.+.......    .+.--.
T Consensus       745 rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap----s~LvP~  820 (1012)
T KOG1445|consen  745 RVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP----SPLVPH  820 (1012)
T ss_pred             EEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC----cccccc
Confidence            9999998866665544322 2234577878999998888664    58888876532  22222111110    011122


Q ss_pred             eCCCCC-EEEEEecCCcEEEEEcccce
Q 016458          305 FSISGR-LLFAGYSNGDCYVWDTLLAK  330 (389)
Q Consensus       305 ~~~~~~-~l~~~~~dg~i~i~d~~~~~  330 (389)
                      +.+|.+ ++++|-.|..|++|.+-...
T Consensus       821 YD~Ds~~lfltGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  821 YDYDSNVLFLTGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             ccCCCceEEEecCCCceEEEEEecCCC
Confidence            445555 56677788899999875443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=2.2e-19  Score=144.39  Aligned_cols=199  Identities=21%  Similarity=0.252  Sum_probs=152.5

Q ss_pred             EEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe
Q 016458          113 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL  192 (389)
Q Consensus       113 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  192 (389)
                      .+++|+++|..+++|+.||.+|||++.+..       .......|.+.|.++.|+||+ ..|++-+.| ..+||+..++.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-------t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~  218 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-------TILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGA  218 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcch-------hhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCc
Confidence            789999999999999999999999976633       455667899999999999998 789999999 99999999996


Q ss_pred             eEEEecCcccCCCCCCeeEEEeeCCCC---c--EEEEeeCCCceEEEeCCCCCc----ceeEEeeeccceEEEEEecCCC
Q 016458          193 RTSVFGGEFQSGHTADVLSVSISGSNS---R--MFVSGSCDSTARLWDTRVASR----AVRTFHGHEGDVNTVKFFPDGN  263 (389)
Q Consensus       193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~---~--~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~i~~~~~~~~~~  263 (389)
                      .+....+   .........+.|+. ++   .  +++.....+.|+.||+.....    ...+.......|.+++.+++|+
T Consensus       219 ~~a~~t~---~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk  294 (398)
T KOG0771|consen  219 ALARKTP---FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK  294 (398)
T ss_pred             hhhhcCC---cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc
Confidence            6665532   23334455666665 33   2  223333456677766654322    2222233345799999999999


Q ss_pred             EEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458          264 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (389)
Q Consensus       264 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (389)
                      +++.|+.||.|.+++..+.+.....+..|..    .|+.+.|+|+.++++..+.+....+..+.-
T Consensus       295 f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~----~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  295 FLALGTMDGSVAIYDAKSLQRLQYVKEAHLG----FVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEEeccCCcEEEEEeceeeeeEeehhhhee----eeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999999999999999988877776654433    699999999999999999998888887654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=7.8e-18  Score=140.65  Aligned_cols=277  Identities=13%  Similarity=0.173  Sum_probs=205.0

Q ss_pred             cccCcEEEEEEcCCCCeE-EEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCC
Q 016458           65 GHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD  143 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  143 (389)
                      +|...-+.|..+|||+|+ |+|..--.|++||+........-......|...-.+.|-..++.-..|..|.+-.-.... 
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h-  127 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH-  127 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee-
Confidence            466778899999999975 677788899999998776655555555666666667666666666677777664433210 


Q ss_pred             CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEE
Q 016458          144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV  223 (389)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  223 (389)
                              .... -...-.+++++.-. .-|+.++....|+-++++.|..+..+     ....+.++++.+++ ...+|+
T Consensus       128 --------y~~R-IP~~GRDm~y~~~s-cDly~~gsg~evYRlNLEqGrfL~P~-----~~~~~~lN~v~in~-~hgLla  191 (703)
T KOG2321|consen  128 --------YRTR-IPKFGRDMKYHKPS-CDLYLVGSGSEVYRLNLEQGRFLNPF-----ETDSGELNVVSINE-EHGLLA  191 (703)
T ss_pred             --------eeee-cCcCCccccccCCC-ccEEEeecCcceEEEEcccccccccc-----ccccccceeeeecC-ccceEE
Confidence                    0000 11223445555443 23666666778999999999998888     56668899999998 778999


Q ss_pred             EeeCCCceEEEeCCCCCcceeEEe------eecc-----ceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC
Q 016458          224 SGSCDSTARLWDTRVASRAVRTFH------GHEG-----DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH  292 (389)
Q Consensus       224 ~~~~dg~i~i~d~~~~~~~~~~~~------~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  292 (389)
                      +|+.+|.|..||.+.. ..+..+.      .|.+     .|+++.|+.+|-.+++|+.+|.+.|||++..+++..-....
T Consensus       192 ~Gt~~g~VEfwDpR~k-srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~  270 (703)
T KOG2321|consen  192 CGTEDGVVEFWDPRDK-SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY  270 (703)
T ss_pred             ecccCceEEEecchhh-hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC
Confidence            9999999999999976 3333332      2323     39999999999999999999999999999988876654433


Q ss_pred             CCCCCCCeeEEEeCCC--CCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          293 GENEIPHVTSIAFSIS--GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       293 ~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                          ..+|..+.|.+.  ++.+++. ....++|||-.+|+....+.     ....+..+|+-|++.++++|-.++.+..
T Consensus       271 ----e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-----pt~~lND~C~~p~sGm~f~Ane~~~m~~  339 (703)
T KOG2321|consen  271 ----ELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE-----PTSDLNDFCFVPGSGMFFTANESSKMHT  339 (703)
T ss_pred             ----ccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc-----ccCCcCceeeecCCceEEEecCCCccee
Confidence                236899999775  3455544 45689999999999998873     3345999999999999999999888776

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.82  E-value=7.9e-18  Score=152.27  Aligned_cols=275  Identities=16%  Similarity=0.150  Sum_probs=189.6

Q ss_pred             CCCeeEEEeeCCCcEEEEEECCCC-cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEE
Q 016458           98 TSQKTHAIKLPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT  176 (389)
Q Consensus        98 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  176 (389)
                      .|..+..+..|...+..++.++.. .++++|+.||+|++|+...-...........++....+.+.++...+.+ ..++.
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av 1115 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAV 1115 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEE
Confidence            466777788888888888887755 9999999999999999987443333334444555567889999999987 67888


Q ss_pred             eeCCCeEEEEeCCCCeeEEE--ecCccc-CCCCCCeeEE-EeeCCCCc-EEEEeeCCCceEEEeCCCCCcceeE--Eeee
Q 016458          177 SSGDQTCVLWDITTGLRTSV--FGGEFQ-SGHTADVLSV-SISGSNSR-MFVSGSCDSTARLWDTRVASRAVRT--FHGH  249 (389)
Q Consensus       177 ~~~dg~i~iwd~~~~~~~~~--~~~~~~-~~~~~~v~~~-~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~  249 (389)
                      ++.||.|++.++........  ...... ....+.+.++ ++...... .++.+..-+.|..||+++. .....  ....
T Consensus      1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~-~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR-HDAWRLKNQLR 1194 (1431)
T ss_pred             EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh-hhHHhhhcCcc
Confidence            89999999999876311111  100000 1122333333 33322333 7888888999999999976 33222  2334


Q ss_pred             ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC---CEEEE-Ee-cCCcEEEE
Q 016458          250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG---RLLFA-GY-SNGDCYVW  324 (389)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~-~~-~dg~i~i~  324 (389)
                      .+.|++++.+|.++++++|+..|.+.+||++-+.++..+..+..    .+++.+..+|-.   ...++ |. ..+.|.+|
T Consensus      1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~----~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR----APIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred             ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc----CCcceEEeeccCCCCceEEEecccCCCceeee
Confidence            57899999999999999999999999999998888777655433    357777776633   34444 44 57789999


Q ss_pred             EcccceEEEeecCcC-----------C----CCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          325 DTLLAKVVLNLGSLQ-----------N----SHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       325 d~~~~~~~~~~~~~~-----------~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      ++.+|.....+....           .    .+.-.....++..-+.++.+|+.|..|+.    ||....+..
T Consensus      1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~----wD~~~p~~s 1339 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRK----WDPTRPEIS 1339 (1431)
T ss_pred             ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceee----ccCCCcccc
Confidence            999886665553210           0    11112222334445568999999999999    999877655

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=2.5e-18  Score=153.20  Aligned_cols=249  Identities=16%  Similarity=0.231  Sum_probs=177.8

Q ss_pred             CcEEEEEEcC--CCCeEEEEecCCcEEEEeC-CCC----CeeEEEee-------CCCcEEEEEECCCCcEEEEecCCCcE
Q 016458           68 GKVYSLDWTS--ERNRIVSASQDGRLIVWNA-LTS----QKTHAIKL-------PCAWVMTCAFSPTGQSVACGGLDSVC  133 (389)
Q Consensus        68 ~~v~~~~~~~--~~~~l~~~~~dg~v~iw~~-~~~----~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i  133 (389)
                      ..|+.+.+-.  |..++++|+.||.|+||+- .++    +.+.....       ..+.-.-+.|.....+|+++|.-..|
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence            3588888876  4458999999999999963 222    22222211       11212446787777777777778999


Q ss_pred             EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee---EEEecCcccCCCCCC--
Q 016458          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR---TSVFGGEFQSGHTAD--  208 (389)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~--  208 (389)
                      +|||.....      .+.....+....|+++.-+..+.+++++|..||.|++||.+....   +...     ..|...  
T Consensus      1190 RIWDa~~E~------~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~-----R~h~~~~~ 1258 (1387)
T KOG1517|consen 1190 RIWDAHKEQ------VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY-----REHNDVEP 1258 (1387)
T ss_pred             EEEecccce------eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee-----cccCCccc
Confidence            999998633      223333345566777776665568999999999999999887543   3333     456666  


Q ss_pred             eeEEEeeCCCCcEEEEeeCCCceEEEeCCCC-CcceeEEeeec--c-ceEEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFHGHE--G-DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ  284 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~--~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  284 (389)
                      |..+.+.+..-..|++|+.+|.|++||+|.. .........|.  + ..+++..+++...+++|+. +.|+||++.. +.
T Consensus      1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~ 1336 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQ 1336 (1387)
T ss_pred             ceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hh
Confidence            9999998844456999999999999999983 33333444443  3 5899999999999999998 9999999874 33


Q ss_pred             eeEeeccC--CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458          285 LQVYYQQH--GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (389)
Q Consensus       285 ~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (389)
                      +..+....  .......+++++|+|-.-++|+|+.|..|.||.....
T Consensus      1337 l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            33333221  1223345899999999999999999999999986544

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.82  E-value=5e-18  Score=131.85  Aligned_cols=246  Identities=15%  Similarity=0.190  Sum_probs=182.0

Q ss_pred             EEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeE
Q 016458          104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC  183 (389)
Q Consensus       104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  183 (389)
                      .+..-.++|+|.+|++++..+|++..+..|.||.....+    .+....++..|...|+++.|.|.. +.|++++.|..-
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~----~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drna   79 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD----LWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNA   79 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC----CceeceehhhhCcceeEEeecCCC-CceeEccCCCCc
Confidence            344455789999999999999999999999999987643    356788899999999999999997 679999999999


Q ss_pred             EEEeCC-CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc---ceeEEeeeccceEEEEEe
Q 016458          184 VLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFF  259 (389)
Q Consensus       184 ~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~  259 (389)
                      ++|... .++-..++..   ..+....+++.|+| +.+.|++|+....|.+|-++....   ....-.++...|.+++|+
T Consensus        80 yVw~~~~~~~WkptlvL---lRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWh  155 (361)
T KOG1523|consen   80 YVWTQPSGGTWKPTLVL---LRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH  155 (361)
T ss_pred             cccccCCCCeeccceeE---EEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeecc
Confidence            999984 4332222211   46788999999999 888999999999999987765421   112334577889999999


Q ss_pred             cCCCEEEEEecCCeEEEEECCCC----c----------eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458          260 PDGNRFGTGSDDGTCRLFDIRTG----H----------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (389)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~~----~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (389)
                      |++-+|++|+.|+..++|..--.    +          +...+... .....+.+..+.|+|+|..|+-.+.|+.+.+-|
T Consensus       156 pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E-~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d  234 (361)
T KOG1523|consen  156 PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE-ASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD  234 (361)
T ss_pred             CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh-hccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence            99999999999999999974210    0          00000000 012345799999999999999999999999999


Q ss_pred             cccce-EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC
Q 016458          326 TLLAK-VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  364 (389)
Q Consensus       326 ~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  364 (389)
                      ..... .+..+.   ..+ -+..++.|-.+. .++.++.|
T Consensus       235 a~~p~~~v~~~~---~~~-lP~ls~~~ise~-~vv~ag~~  269 (361)
T KOG1523|consen  235 AAGPSERVQSVA---TAQ-LPLLSVSWISEN-SVVAAGYD  269 (361)
T ss_pred             cCCCchhccchh---hcc-CCceeeEeecCC-ceeecCCC
Confidence            87654 233331   222 566777776543 34455555

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.82  E-value=6.4e-20  Score=159.28  Aligned_cols=268  Identities=20%  Similarity=0.298  Sum_probs=208.8

Q ss_pred             cccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECC
Q 016458           40 GYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP  119 (389)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~  119 (389)
                      ....+.+...+.|+..+..+...+.||.+.|+.++.+.++-++++++.|..|++|.+.++.++..+.+|.+.|++++|+|
T Consensus       205 Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP  284 (1113)
T KOG0644|consen  205 IITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSP  284 (1113)
T ss_pred             EeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCc
Confidence            34567778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC
Q 016458          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG  199 (389)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  199 (389)
                      -.    +.+.||++++||.+-....  ..+....+ ....-+.++.|...+ ..+++++.|+.-..|.+.....      
T Consensus       285 ~~----sss~dgt~~~wd~r~~~~~--y~prp~~~-~~~~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~~------  350 (1113)
T KOG0644|consen  285 RA----SSSDDGTCRIWDARLEPRI--YVPRPLKF-TEKDLVDSILFENNG-DRFLTGSRDGEARNHEFEQLAW------  350 (1113)
T ss_pred             cc----cCCCCCceEeccccccccc--cCCCCCCc-ccccceeeeeccccc-cccccccCCcccccchhhHhhh------
Confidence            65    6788999999998821100  00000111 122456667777766 5689999999988887654221      


Q ss_pred             cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEE
Q 016458          200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFD  278 (389)
Q Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d  278 (389)
                           +...+.-+..+.+...+.+++-.+-.+.+|++.++ ...+.+.+|...+..+.++| +.....+++.||...|||
T Consensus       351 -----~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd  424 (1113)
T KOG0644|consen  351 -----RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD  424 (1113)
T ss_pred             -----hccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence                 11111112222223356677777888999999988 78888899999999999999 555567899999999999


Q ss_pred             CCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE
Q 016458          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  332 (389)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  332 (389)
                      +-.+.++..+...+..     +....||++|..++....-|.++|.....++..
T Consensus       425 i~eg~pik~y~~gh~k-----l~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  425 IWEGIPIKHYFIGHGK-----LVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             cccCCcceeeecccce-----eeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence            9999998888765443     788899999999999999999999986655443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=7.2e-19  Score=146.04  Aligned_cols=225  Identities=19%  Similarity=0.276  Sum_probs=167.4

Q ss_pred             CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC-CCcEEEEee
Q 016458          100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSS  178 (389)
Q Consensus       100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~  178 (389)
                      .....+.+|.+.|+|+.|+.+|.+|++|+.|-.+.|||.-..+      .....-.+|...|.++.|.|. ++.++++|.
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K------llhsI~TgHtaNIFsvKFvP~tnnriv~sgA  114 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK------LLHSISTGHTANIFSVKFVPYTNNRIVLSGA  114 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc------eeeeeecccccceeEEeeeccCCCeEEEecc
Confidence            3446678999999999999999999999999999999987533      244555799999999999996 446788999


Q ss_pred             CCCeEEEEeCCCC----------eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE--
Q 016458          179 GDQTCVLWDITTG----------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--  246 (389)
Q Consensus       179 ~dg~i~iwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--  246 (389)
                      .|..|+++|+...          .....+     ..|...|..++..|...+.+.++++||+|+-||++.+..+-...  
T Consensus       115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~-----~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~  189 (758)
T KOG1310|consen  115 GDKLIKLFDLDSSKEGGMDHGMEETTRCW-----SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC  189 (758)
T ss_pred             CcceEEEEecccccccccccCccchhhhh-----hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccc
Confidence            9999999999852          222233     56888899999999777999999999999999999753222111  


Q ss_pred             -------eeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCc------------------eeeEeeccCCCCC----
Q 016458          247 -------HGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGH------------------QLQVYYQQHGENE----  296 (389)
Q Consensus       247 -------~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~------------------~~~~~~~~~~~~~----  296 (389)
                             .+.--...++..+| +..+|++|+.|-..++||.+...                  ++..+...+..+.    
T Consensus       190 ~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~  269 (758)
T KOG1310|consen  190 PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNL  269 (758)
T ss_pred             cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccc
Confidence                   11223467899999 56789999999999999943211                  1111211111011    


Q ss_pred             ---CCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458          297 ---IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       297 ---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (389)
                         ...++-++|+|+|.-|++.-....|+++|+..++....+
T Consensus       270 ~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  270 DRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             ccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence               112577889999998887766678999999887766554

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.81  E-value=1.2e-17  Score=133.11  Aligned_cols=273  Identities=15%  Similarity=0.116  Sum_probs=199.5

Q ss_pred             cccCcEEEEEEcCCCC--eEEEEecCCcEEEEeCCCCCeeEEE------eeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458           65 GHAGKVYSLDWTSERN--RIVSASQDGRLIVWNALTSQKTHAI------KLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~--~l~~~~~dg~v~iw~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (389)
                      .-...|+.++|.-+++  .|...+.|..+..+.+........+      .....+|..++..  ...|++|-.+|.+.+|
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR  130 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence            3455788888887664  4555546667777777666554433      3344556555543  4457777889999999


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC--CeEEEEeCCCCeeEEEecCcc----cCCCCCCee
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGEF----QSGHTADVL  210 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~----~~~~~~~v~  210 (389)
                      ....+.....   ....+.. ...+..+.-++..+.++++|+..  ..+.+||+++.+.+..-....    ...-+-.++
T Consensus       131 ~~k~~d~hss---~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~t  206 (412)
T KOG3881|consen  131 HDKSGDLHSS---KLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWIT  206 (412)
T ss_pred             eccCCccccc---cceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeec
Confidence            9986442111   1122222 25566777777777778889999  899999999885554432110    011223467


Q ss_pred             EEEeeCCC--CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeE-
Q 016458          211 SVSISGSN--SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV-  287 (389)
Q Consensus       211 ~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-  287 (389)
                      ++.|.+ .  ...|++++.-+.+++||.+...+++..+.-.+.+++++...|+++++++|..-|.+..||++.++.... 
T Consensus       207 di~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~  285 (412)
T KOG3881|consen  207 DIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG  285 (412)
T ss_pred             cceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence            788887 4  778999999999999999999899999998899999999999999999999999999999999888776 


Q ss_pred             eeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (389)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (389)
                      +....     +.|+++..+|.++++++++-|..|+|+|+.+.+++...     .-...++++-+.++
T Consensus       286 ~kg~t-----Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv-----YvKs~lt~il~~~~  342 (412)
T KOG3881|consen  286 LKGIT-----GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV-----YVKSRLTFILLRDD  342 (412)
T ss_pred             cCCcc-----CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh-----hhhccccEEEecCC
Confidence            33333     35999999999999999999999999999997776554     23445677777553

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=9.1e-17  Score=140.51  Aligned_cols=234  Identities=15%  Similarity=0.099  Sum_probs=156.3

Q ss_pred             cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec---CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE
Q 016458           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG---LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY  166 (389)
Q Consensus        90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (389)
                      .|.+||...... ..+..+...+...+|+|+|+.|+..+   .+..+.+|++.++..        ..+....+.+....|
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--------~~l~~~~~~~~~~~~  250 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------RQVASFPRHNGAPAF  250 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--------EEccCCCCCcCCeEE
Confidence            688888765443 44445667899999999999988654   245789999876431        112222233456799


Q ss_pred             eeCCCcEEEEeeCCC--eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-CCceEEE--eCCCCCc
Q 016458          167 VPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLW--DTRVASR  241 (389)
Q Consensus       167 ~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~--d~~~~~~  241 (389)
                      +|+|..++++.+.+|  .|.+||+.++......      .+...+....|+| +++.|+..+. ++...+|  |+..+  
T Consensus       251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt------~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g--  321 (429)
T PRK03629        251 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT------DGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGG--  321 (429)
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc------CCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCC--
Confidence            999965555555555  5899999887665443      3344678899999 6666655444 4554555  55543  


Q ss_pred             ceeEEeeeccceEEEEEecCCCEEEEEecC---CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC
Q 016458          242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN  318 (389)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (389)
                      ....+..+........|+|||++|+..+.+   ..|.+||+.++.... +....      ......|+|||++|+.++.+
T Consensus       322 ~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~------~~~~p~~SpDG~~i~~~s~~  394 (429)
T PRK03629        322 APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTF------LDETPSIAPNGTMVIYSSSQ  394 (429)
T ss_pred             CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCC------CCCCceECCCCCEEEEEEcC
Confidence            334444444456678999999999876643   358889998876432 22211      12457899999999998877


Q ss_pred             Cc---EEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458          319 GD---CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (389)
Q Consensus       319 g~---i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (389)
                      +.   +.++++ ++.....+    ..|.+.+...+|+|
T Consensus       395 ~~~~~l~~~~~-~G~~~~~l----~~~~~~~~~p~Wsp  427 (429)
T PRK03629        395 GMGSVLNLVST-DGRFKARL----PATDGQVKFPAWSP  427 (429)
T ss_pred             CCceEEEEEEC-CCCCeEEC----ccCCCCcCCcccCC
Confidence            64   667777 45555556    56778889999987

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.80  E-value=1.4e-16  Score=123.83  Aligned_cols=239  Identities=12%  Similarity=0.230  Sum_probs=166.4

Q ss_pred             EEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC------CeEEE
Q 016458          112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVL  185 (389)
Q Consensus       112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i  185 (389)
                      ...++|+.|...+++|..+| .+||+.+.-++.     .........-.+.-+-|-.  .-+.+.|+.+      ..|.|
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~-----~~r~~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviI   79 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKES-----ASRQFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVII   79 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhh-----hhhccccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEE
Confidence            45589999999999998776 799998863211     0111111111222222322  1233344433      57999


Q ss_pred             EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec--CCC
Q 016458          186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP--DGN  263 (389)
Q Consensus       186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~  263 (389)
                      ||=....++..+      ....+|.++.+.+   +.+++.. .+.|++|......+.++.+....+|---++..|  +..
T Consensus        80 WDD~k~~~i~el------~f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~  149 (346)
T KOG2111|consen   80 WDDLKERCIIEL------SFNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS  149 (346)
T ss_pred             EecccCcEEEEE------EeccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence            997777777776      5678899999975   3455444 578999999855466666654333322333444  445


Q ss_pred             EEEEEe-cCCeEEEEECCCCce--eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCc-EEEEEcccceEEEeecCcC
Q 016458          264 RFGTGS-DDGTCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD-CYVWDTLLAKVVLNLGSLQ  339 (389)
Q Consensus       264 ~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~  339 (389)
                      +|+.-+ .-|.|++-|+...+.  ...+..+.     ..|.+++++.+|..+|+++..|+ |+|||..+|..+.++..  
T Consensus       150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~-----s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR--  222 (346)
T KOG2111|consen  150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHD-----SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR--  222 (346)
T ss_pred             EEEcCCCccceEEEEEhhhcCcCCceEEEccc-----CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec--
Confidence            555544 569999999987655  24444433     35999999999999999999996 79999999999999974  


Q ss_pred             CCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          340 NSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       340 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      ......|.+|+|||++.+|+++|..|++.|    +.+...
T Consensus       223 G~d~A~iy~iaFSp~~s~LavsSdKgTlHi----F~l~~~  258 (346)
T KOG2111|consen  223 GVDRADIYCIAFSPNSSWLAVSSDKGTLHI----FSLRDT  258 (346)
T ss_pred             CCchheEEEEEeCCCccEEEEEcCCCeEEE----EEeecC
Confidence            334568999999999999999999999999    777653

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.80  E-value=4e-18  Score=128.88  Aligned_cols=274  Identities=17%  Similarity=0.156  Sum_probs=184.5

Q ss_pred             cccccCCCCCcccCCCcceeeeecc-cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEEC
Q 016458           40 GYSRSQGRAPVSFGPTDLVCCRTLQ-GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS  118 (389)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~  118 (389)
                      .++....+....|.....+....++ .|...|+.+.--|+ ..|.+-+.|+.+.+|++.-+..+..-.   -.++++-|.
T Consensus        28 L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~S---i~~nslgFC  103 (323)
T KOG0322|consen   28 LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHS---IVVNSLGFC  103 (323)
T ss_pred             hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEee---eeccccccc
Confidence            5566677788889888888888888 66779999999987 578889999999999998765544333   223344333


Q ss_pred             C-----CCc----EEEEecCCC-cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCC--CcEEEEeeCCCeEEEE
Q 016458          119 P-----TGQ----SVACGGLDS-VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCVLW  186 (389)
Q Consensus       119 ~-----~~~----~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iw  186 (389)
                      +     +++    .++.-+... .+++-|.....   ..........+..+.+.|..+....  .-++++|..+|.+.+|
T Consensus       104 rfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t---qv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~w  180 (323)
T KOG0322|consen  104 RFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT---QVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIW  180 (323)
T ss_pred             cceeccCCCcchhheecCCcccchhhhhccCccc---eeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEE
Confidence            2     211    111111100 01111111100   0000001112234566766643322  2356788889999999


Q ss_pred             eCCCCeeEEEecCc-----ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc--cee-EEeeeccceEEEEE
Q 016458          187 DITTGLRTSVFGGE-----FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVR-TFHGHEGDVNTVKF  258 (389)
Q Consensus       187 d~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~-~~~~~~~~i~~~~~  258 (389)
                      |+.++..+..++..     ....|..+|.++.+.+ ..+.=++|+.+..+..|++.....  ++. ...-.+-.|..+..
T Consensus       181 d~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrI  259 (323)
T KOG0322|consen  181 DLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRI  259 (323)
T ss_pred             EccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEE
Confidence            99998544443221     1146888999999987 444446777788899998864411  111 22223446888999


Q ss_pred             ecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458          259 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       259 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (389)
                      -||++.+++++.|+.|++|..++..++..+..+..     .|++++|+|+.+.+|+++.|++|.+|++
T Consensus       260 RpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-----gvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  260 RPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA-----GVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc-----ceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999999999998877654     4999999999999999999999999986

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.79  E-value=5.9e-19  Score=143.54  Aligned_cols=252  Identities=15%  Similarity=0.199  Sum_probs=195.3

Q ss_pred             EeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEE
Q 016458          105 IKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV  184 (389)
Q Consensus       105 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  184 (389)
                      +....-....+.++.+|..|+.|+..|.+..+|..+..       +...+ .-...|.++.|..+. + +++......++
T Consensus       125 L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~-------L~~Ei-~v~Etv~Dv~~LHne-q-~~AVAQK~y~y  194 (545)
T KOG1272|consen  125 LSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK-------LHFEI-NVMETVRDVTFLHNE-Q-FFAVAQKKYVY  194 (545)
T ss_pred             ccccccCCeeeeecCCccEEEecCCccceeeeecccce-------eeeee-ehhhhhhhhhhhcch-H-HHHhhhhceEE
Confidence            34434446788999999999999999999999998754       22222 234568889998864 4 55556668899


Q ss_pred             EEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCE
Q 016458          185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR  264 (389)
Q Consensus       185 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  264 (389)
                      |||- .|..+..+      .....|..+.|.| ...+|++++..|.++.-|+..+ +.+..+....+.+..++-+|-+..
T Consensus       195 vYD~-~GtElHCl------k~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~G-klVa~~~t~~G~~~vm~qNP~NaV  265 (545)
T KOG1272|consen  195 VYDN-NGTELHCL------KRHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTG-KLVASIRTGAGRTDVMKQNPYNAV  265 (545)
T ss_pred             EecC-CCcEEeeh------hhcCchhhhcccc-hhheeeecccCCceEEEeechh-hhhHHHHccCCccchhhcCCccce
Confidence            9995 45555555      3446789999999 8889999999999999999998 788888878888999999998889


Q ss_pred             EEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCC
Q 016458          265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG  344 (389)
Q Consensus       265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (389)
                      +-+|...|+|.+|.....+++..+..+.+.     |.++++.++|+|+++++.|..++|||++....+.++.    . ..
T Consensus       266 ih~GhsnGtVSlWSP~skePLvKiLcH~g~-----V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~----t-p~  335 (545)
T KOG1272|consen  266 IHLGHSNGTVSLWSPNSKEPLVKILCHRGP-----VSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR----T-PH  335 (545)
T ss_pred             EEEcCCCceEEecCCCCcchHHHHHhcCCC-----cceEEECCCCcEEeecccccceeEeeeccccccceee----c-CC
Confidence            999999999999999999888888776664     9999999999999999999999999999888776663    2 34


Q ss_pred             CeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccCcccc
Q 016458          345 RITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPWGVK  387 (389)
Q Consensus       345 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~~~~~  387 (389)
                      +...+++|..|  +++++....+.||..+-+.....-.|+|.|
T Consensus       336 ~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H  376 (545)
T KOG1272|consen  336 PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNH  376 (545)
T ss_pred             Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhh
Confidence            67788888766  445556668888222222222334456554

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.79  E-value=3.1e-17  Score=128.10  Aligned_cols=290  Identities=16%  Similarity=0.170  Sum_probs=201.7

Q ss_pred             cCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc
Q 016458           44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ  122 (389)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~  122 (389)
                      ..++....|+..++.-...+..-..++.+++|||||+ .|.+..-|-.|.+|.+.+.+.. -++.....+..++|+|+|+
T Consensus        68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~  146 (447)
T KOG4497|consen   68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQ  146 (447)
T ss_pred             eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-EecccccCceeEEECCCCc
Confidence            3445667788888888888888899999999999996 5556677889999998876543 3455556689999999999


Q ss_pred             EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCccc
Q 016458          123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ  202 (389)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  202 (389)
                      +.+..+.-..-..+++..-    ..+.....+.-.+-..+.+.|+|+| +.         +.+||---...+..+     
T Consensus       147 f~ai~sRrDCkdyv~i~~c----~~W~ll~~f~~dT~DltgieWsPdg-~~---------laVwd~~Leykv~aY-----  207 (447)
T KOG4497|consen  147 FCAILSRRDCKDYVQISSC----KAWILLKEFKLDTIDLTGIEWSPDG-NW---------LAVWDNVLEYKVYAY-----  207 (447)
T ss_pred             eeeeeecccHHHHHHHHhh----HHHHHHHhcCCCcccccCceECCCC-cE---------EEEecchhhheeeee-----
Confidence            9888765432222222210    1122334444555667889999998 33         456664333332222     


Q ss_pred             CCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC------------------------------------------
Q 016458          203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS------------------------------------------  240 (389)
Q Consensus       203 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------------------------------------  240 (389)
                       ...-.+..++|+| .+++|++|+.|+.+++.+--+-+                                          
T Consensus       208 -e~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~  285 (447)
T KOG4497|consen  208 -ERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE  285 (447)
T ss_pred             -eeccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence             2335688999999 88999999999999886521000                                          


Q ss_pred             -----------------cceeEEe------eeccceEEEEEecCCCEEEEEec--CCeEEEEECCCCceeeEeeccCCCC
Q 016458          241 -----------------RAVRTFH------GHEGDVNTVKFFPDGNRFGTGSD--DGTCRLFDIRTGHQLQVYYQQHGEN  295 (389)
Q Consensus       241 -----------------~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~  295 (389)
                                       ..+..++      ...-.+.-++|++|..++++-..  -+.+.+||++..+....+.+.+   
T Consensus       286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~---  362 (447)
T KOG4497|consen  286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKH---  362 (447)
T ss_pred             cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcc---
Confidence                             0000111      01123567999999999888653  3579999999876655554433   


Q ss_pred             CCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCe
Q 016458          296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN  366 (389)
Q Consensus       296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  366 (389)
                         +|....|+|....|+.+.....+++|.......+...     ...-.|..++|.-+|..++..+.|..
T Consensus       363 ---piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP-----~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  363 ---PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP-----KKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             ---ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC-----CCCceeeeEEecCCCcEEEEEcCCce
Confidence               4999999999998888888888999998665444433     33357999999999999999998864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=2.9e-17  Score=144.02  Aligned_cols=222  Identities=18%  Similarity=0.201  Sum_probs=149.7

Q ss_pred             eeecccccCcEEEEEEcCCCCeEEEEecC---CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec-CCCcEEE
Q 016458           60 CRTLQGHAGKVYSLDWTSERNRIVSASQD---GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSI  135 (389)
Q Consensus        60 ~~~l~~h~~~v~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~v  135 (389)
                      .+.+..|...+.+.+|+|||+.|+.++.+   ..|++||+.+++.... ....+....++|+|+|+.|+.+. .+|.+.|
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~I  274 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNI  274 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEE
Confidence            45677888899999999999999887654   3699999988764332 22223345789999999888764 6787666


Q ss_pred             E--eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEecCcccCCCCCCeeEE
Q 016458          136 F--NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSV  212 (389)
Q Consensus       136 w--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~  212 (389)
                      |  |+.++.        ...+..+...+....|+|++..+++++..+|...+|++.... ....+      .+..  ...
T Consensus       275 y~~d~~~~~--------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l------~~~~--~~~  338 (429)
T PRK01742        275 YVMGANGGT--------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV------GGRG--YSA  338 (429)
T ss_pred             EEEECCCCC--------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe------cCCC--CCc
Confidence            6  444322        234455666788899999986555566667888888765422 12222      1222  456


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECC--CCceeeEeec
Q 016458          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR--TGHQLQVYYQ  290 (389)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~  290 (389)
                      .|+| +++.++..+.++ +.+||+.++ ... .+... .....+.|+|+|++|+.++.+|.+.+|++.  ++.....+..
T Consensus       339 ~~Sp-DG~~ia~~~~~~-i~~~Dl~~g-~~~-~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~  413 (429)
T PRK01742        339 QISA-DGKTLVMINGDN-VVKQDLTSG-STE-VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG  413 (429)
T ss_pred             cCCC-CCCEEEEEcCCC-EEEEECCCC-CeE-EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence            7999 777777766654 666998876 322 22211 123567899999999999999988888753  4666666643


Q ss_pred             cCCCCCCCCeeEEEeCCC
Q 016458          291 QHGENEIPHVTSIAFSIS  308 (389)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~  308 (389)
                      +..     .+...+|+|-
T Consensus       414 ~~g-----~~~~p~wsp~  426 (429)
T PRK01742        414 SDG-----QVKFPAWSPY  426 (429)
T ss_pred             CCC-----CCCCcccCCC
Confidence            332     3677888874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=1.4e-16  Score=140.06  Aligned_cols=235  Identities=16%  Similarity=0.147  Sum_probs=155.5

Q ss_pred             CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC---CcEEEEeCCCCCCCCCCCcceeeecccccceEEEE
Q 016458           89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ  165 (389)
Q Consensus        89 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  165 (389)
                      ..|.+||.. +.....+..+...+...+|+|+|+.|+..+.+   ..|.+|++.++.        ...+....+...+..
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~--------~~~l~~~~g~~~~~~  254 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ--------RELVASFRGINGAPS  254 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC--------EEEeccCCCCccCce
Confidence            368889975 44445566667789999999999999887643   469999997643        122233344455789


Q ss_pred             EeeCCCcEEEEeeCCC--eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCCc--eEEEeCCCCC
Q 016458          166 YVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDST--ARLWDTRVAS  240 (389)
Q Consensus       166 ~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~~~  240 (389)
                      |+|+|..++++.+.+|  .|++||+.++.....      ..+.......+|+| +++.|+.++ .+|.  |+++|+..+ 
T Consensus       255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l------t~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g-  326 (433)
T PRK04922        255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL------TNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGG-  326 (433)
T ss_pred             ECCCCCEEEEEEeCCCCceEEEEECCCCCeEEC------ccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCC-
Confidence            9999966666666655  599999988875433      23344456789999 666655544 4555  666666544 


Q ss_pred             cceeEEeeeccceEEEEEecCCCEEEEEecCC---eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec
Q 016458          241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (389)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (389)
                      . ...+..+.......+|+|+|++|+..+.++   .|.+||+.++... .+....      ......|+|||++++..+.
T Consensus       327 ~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~------~~~~p~~spdG~~i~~~s~  398 (433)
T PRK04922        327 S-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGS------LDESPSFAPNGSMVLYATR  398 (433)
T ss_pred             C-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCC------CCCCceECCCCCEEEEEEe
Confidence            2 333333334455789999999998765443   6999999877654 322211      1345689999998877665


Q ss_pred             C---CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458          318 N---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (389)
Q Consensus       318 d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (389)
                      +   +.|+++++.. .....+    ..+.+.+...+|+|
T Consensus       399 ~~g~~~L~~~~~~g-~~~~~l----~~~~g~~~~p~wsp  432 (433)
T PRK04922        399 EGGRGVLAAVSTDG-RVRQRL----VSADGEVREPAWSP  432 (433)
T ss_pred             cCCceEEEEEECCC-CceEEc----ccCCCCCCCCccCC
Confidence            3   3578888754 444444    34556677788876

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=2.2e-16  Score=138.32  Aligned_cols=238  Identities=16%  Similarity=0.173  Sum_probs=152.4

Q ss_pred             CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC---CcEEEEeCCCCCCCCCCCcceeeecccccceEEEE
Q 016458           89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ  165 (389)
Q Consensus        89 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  165 (389)
                      ..|.++|. ++.....+..+...+.+.+|+|+|+.|+..+.+   ..|.+||+.++.        ...+....+.+....
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~--------~~~l~~~~g~~~~~~  246 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR--------RRVVANFKGSNSAPA  246 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC--------EEEeecCCCCccceE
Confidence            35777776 455555555667789999999999999877643   459999998754        122222334566889


Q ss_pred             EeeCCCcEEEEeeCCCeEEEEe--CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEE-EeeCCCceEEEeCCCCCcc
Q 016458          166 YVPDEDTHLITSSGDQTCVLWD--ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDSTARLWDTRVASRA  242 (389)
Q Consensus       166 ~~~~~~~~l~~~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~  242 (389)
                      |+|++..++++.+.+|...+|.  +..+.. ..+     ..+........|+| +++.++ ++..+|...+|.+......
T Consensus       247 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~l-----t~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~  319 (427)
T PRK02889        247 WSPDGRTLAVALSRDGNSQIYTVNADGSGL-RRL-----TQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGA  319 (427)
T ss_pred             ECCCCCEEEEEEccCCCceEEEEECCCCCc-EEC-----CCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCc
Confidence            9999866556777787766654  444442 333     23444556788999 666555 4444566777765432222


Q ss_pred             eeEEeeeccceEEEEEecCCCEEEEEecCC---eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC
Q 016458          243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG  319 (389)
Q Consensus       243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (389)
                      ...+..+.......+|+|+|++|+..+.++   .|.+||+.++.... +....      ......|+|||++|+.++.++
T Consensus       320 ~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~------~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        320 AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTT------RDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCC------CccCceECCCCCEEEEEEecC
Confidence            333332333345688999999998777654   69999998876443 22211      135678999999888776544


Q ss_pred             ---cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458          320 ---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (389)
Q Consensus       320 ---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (389)
                         .+++.++ ++.....+    ..+.+.+...+|+|-
T Consensus       393 g~~~l~~~~~-~g~~~~~l----~~~~g~~~~p~wsp~  425 (427)
T PRK02889        393 GRSVLAAVSS-DGRIKQRL----SVQGGDVREPSWGPF  425 (427)
T ss_pred             CCEEEEEEEC-CCCceEEe----ecCCCCCCCCccCCC
Confidence               3556666 45555555    445667778888873

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=1.4e-15  Score=133.87  Aligned_cols=233  Identities=15%  Similarity=0.146  Sum_probs=157.3

Q ss_pred             cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC---CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE
Q 016458           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY  166 (389)
Q Consensus        90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (389)
                      .|.++|.. +.....+..+...+...+|+|+|+.|+..+.   +..|.+||+.++.        ...+..+.+.+....|
T Consensus       183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--------~~~l~~~~g~~~~~~~  253 (435)
T PRK05137        183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--------RELVGNFPGMTFAPRF  253 (435)
T ss_pred             EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc--------EEEeecCCCcccCcEE
Confidence            78888874 4555666777788999999999999887653   4689999997753        2234445566778899


Q ss_pred             eeCCCcEEEEeeCCCe--EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCC--ceEEEeCCCCCc
Q 016458          167 VPDEDTHLITSSGDQT--CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDS--TARLWDTRVASR  241 (389)
Q Consensus       167 ~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~  241 (389)
                      +|+|..++++.+.++.  |.+||+.++.....      ..+........|+| +++.++..+ .+|  .|+++|+...  
T Consensus       254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~L------t~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~--  324 (435)
T PRK05137        254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRL------TDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGS--  324 (435)
T ss_pred             CCCCCEEEEEEecCCCceEEEEECCCCceEEc------cCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCC--
Confidence            9999666667666655  77789888765443      23445567789999 666665554 344  5777787644  


Q ss_pred             ceeEEeeeccceEEEEEecCCCEEEEEecC---CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC
Q 016458          242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN  318 (389)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (389)
                      ....+..+...+....|+|+|+.|+..+.+   ..|.+||+..+.. ..+....      .+....|+|||++|+..+.+
T Consensus       325 ~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~------~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        325 NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGF------LVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCC------CCCCCeECCCCCEEEEEEcc
Confidence            334444445556778999999999877643   3688889765433 3322211      25678999999988765543


Q ss_pred             ------CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458          319 ------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (389)
Q Consensus       319 ------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (389)
                            ..++++|+..+.. ..+    . ..+.+...+|+|
T Consensus       398 ~~~~~~~~L~~~dl~g~~~-~~l----~-~~~~~~~p~Wsp  432 (435)
T PRK05137        398 PGSGGAPKLYTVDLTGRNE-REV----P-TPGDASDPAWSP  432 (435)
T ss_pred             CCCCCcceEEEEECCCCce-EEc----c-CCCCccCcccCC
Confidence                  2578888866544 343    2 233466677776

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.76  E-value=8.2e-15  Score=124.43  Aligned_cols=270  Identities=15%  Similarity=0.166  Sum_probs=172.5

Q ss_pred             CcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec
Q 016458           49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG  128 (389)
Q Consensus        49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  128 (389)
                      ....+....+...++......-..+.|+|||+++++++.||.|.++|+.+.+.+.+++.... ...++++++|++++++.
T Consensus        18 v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n   96 (369)
T PF02239_consen   18 VAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVAN   96 (369)
T ss_dssp             EEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEE
T ss_pred             EEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEe
Confidence            33455666777888876655545678999999999999999999999999999999987654 78899999999998775


Q ss_pred             -CCCcEEEEeCCCCCCCCCCCcceeeecc-------cccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc
Q 016458          129 -LDSVCSIFNLNSPTDKDGNLPVSRMLSG-------HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE  200 (389)
Q Consensus       129 -~dg~i~vw~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  200 (389)
                       ..+.+.++|..+.+       ....+..       ....+..+..+|..+.++++.-..+.|.+.|.........-.  
T Consensus        97 ~~~~~v~v~D~~tle-------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~--  167 (369)
T PF02239_consen   97 YEPGTVSVIDAETLE-------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT--  167 (369)
T ss_dssp             EETTEEEEEETTT---------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE--
T ss_pred             cCCCceeEecccccc-------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee--
Confidence             58999999988743       3443332       234677888888875455555556899888987754332211  


Q ss_pred             ccCCCCCCeeEEEeeCCCCcEE-EEeeCCCceEEEeCCCCCc--------------------------------------
Q 016458          201 FQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASR--------------------------------------  241 (389)
Q Consensus       201 ~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~--------------------------------------  241 (389)
                        ...........|+| +++++ ++...+..|.++|..+...                                      
T Consensus       168 --i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~  244 (369)
T PF02239_consen  168 --IKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP  244 (369)
T ss_dssp             --EE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred             --ecccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence              23445677888998 55554 4445566777777664411                                      


Q ss_pred             ----------------ceeEEeeeccceEEEEEecCCCEEEEE----ecCCeEEEEECCCCceeeEeeccCCCCCCCCee
Q 016458          242 ----------------AVRTFHGHEGDVNTVKFFPDGNRFGTG----SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT  301 (389)
Q Consensus       242 ----------------~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~  301 (389)
                                      .++.+.....+ .-+..+|+++++.+.    ...+.|.++|.++.+....+......    .+.
T Consensus       245 ~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~----~~~  319 (369)
T PF02239_consen  245 LIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGK----RVV  319 (369)
T ss_dssp             EEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT------EE
T ss_pred             cccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCC----cEe
Confidence                            11111111112 346778999999988    45589999999998776666443321    388


Q ss_pred             EEEeCCCCCEEEEEecCC--cEEEEEcccceEEEeec
Q 016458          302 SIAFSISGRLLFAGYSNG--DCYVWDTLLAKVVLNLG  336 (389)
Q Consensus       302 ~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~  336 (389)
                      .+.|+++|+++..+..++  .|.+||..+.+....+.
T Consensus       320 h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  320 HMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             ccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            999999999777765543  69999999999998883

...

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=5.1e-16  Score=122.85  Aligned_cols=240  Identities=18%  Similarity=0.255  Sum_probs=159.6

Q ss_pred             CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                      ..+..++|++.-..++++..|..|++|+-....       ...........|+|++|-|.+...|+.|+..| |.+|...
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~-------pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s  170 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC-------PTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDS  170 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCCCC-------CceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcC
Confidence            457889999988888999999999999977622       11222233567999999999877788777755 8899765


Q ss_pred             CCeeEEEe----c---C-cccCCCCCCeeEEEeeCCCCcEEEEeeC-CCceEEEeCCCCCcceeEEeeeccceEEEEEec
Q 016458          190 TGLRTSVF----G---G-EFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP  260 (389)
Q Consensus       190 ~~~~~~~~----~---~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~  260 (389)
                      ........    .   . ..+.....+|+++.|.+ ++..+++++. |..|.|||..++ ..+.......+.+.-+.|||
T Consensus       171 ~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg-~~~pL~~~glgg~slLkwSP  248 (445)
T KOG2139|consen  171 RTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTG-QKIPLIPKGLGGFSLLKWSP  248 (445)
T ss_pred             cccccccccccccccchhheeCCCCceeeEEEEcC-CCCEEeecccCcceEEEEcCCCC-CcccccccCCCceeeEEEcC
Confidence            32111110    0   0 00112237899999999 6777777664 678999999987 33333333456788999999


Q ss_pred             CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce----------
Q 016458          261 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK----------  330 (389)
Q Consensus       261 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------  330 (389)
                      |+.+|++++-|+..++|...............+     .|...+|+|+|++|+.... |.-++|.+....          
T Consensus       249 dgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-----rvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~  322 (445)
T KOG2139|consen  249 DGDVLFAATCDAVFRLWQENQSWTKERWILGSG-----RVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQS  322 (445)
T ss_pred             CCCEEEEecccceeeeehhcccceecceeccCC-----ceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCccc
Confidence            999999999999999996554333333333222     4899999999997665543 234455432110          


Q ss_pred             -----EEEeecC-----cCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458          331 -----VVLNLGS-----LQNSHEGRITCLGLSADGSALCTGSWDT  365 (389)
Q Consensus       331 -----~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg  365 (389)
                           .+..+..     ...-..+++.+++|+|.|.+|++.-..+
T Consensus       323 ~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  323 IKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             ceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence                 0111100     0012356889999999999999866544

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=3.6e-17  Score=134.11  Aligned_cols=272  Identities=19%  Similarity=0.281  Sum_probs=200.1

Q ss_pred             eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC-CCcEEEEeeC
Q 016458          101 KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSG  179 (389)
Q Consensus       101 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~  179 (389)
                      ....+..|.+.|..+.|+..|..|++|+.|..|.+||+....      +......+|...|....|.|. +...+++++.
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~  207 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR  207 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccC------cccccccccccchhhhhccCCCCCcCceeccc
Confidence            345667899999999999999999999999999999998754      234455688888888889886 3467999999


Q ss_pred             CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE---eeecc---ce
Q 016458          180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---HGHEG---DV  253 (389)
Q Consensus       180 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~---~i  253 (389)
                      ||.|++=.+..........  ....|.++|.-++.-|...+-|.+++.|+.+.-+|++.. .+...+   ..+..   ..
T Consensus       208 dgqvr~s~i~~t~~~e~t~--rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~-~pa~~~~cr~~~~~~~v~L  284 (559)
T KOG1334|consen  208 DGQVRVSEILETGYVENTK--RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD-VPAEKFVCREADEKERVGL  284 (559)
T ss_pred             cCceeeeeeccccceecce--ecccccCccceeeecCCCCCcccccccccceeeeeeccC-CccceeeeeccCCccceee
Confidence            9999987765433222111  115799999999999989999999999999999999876 332222   22333   46


Q ss_pred             EEEEEecC-CCEEEEEecCCeEEEEECCCCcee------eEeeccCCC-CCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458          254 NTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQL------QVYYQQHGE-NEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (389)
Q Consensus       254 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (389)
                      ..++..|. ...+++++.|-.+++||.+.-...      ..+..++.. .....|++++|+.++.-|.++..|-.|+++.
T Consensus       285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~  364 (559)
T KOG1334|consen  285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN  364 (559)
T ss_pred             eeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence            78888884 458999999999999998753322      333332221 2333599999998888888888888999995


Q ss_pred             cccceE--E-------EeecCcCCCCCC--CeeEEEE-CCCCCeEEeeeCCCeeEEeecceecccCcccCcc
Q 016458          326 TLLAKV--V-------LNLGSLQNSHEG--RITCLGL-SADGSALCTGSWDTNLKVNLGFWRVQEGALSPWG  385 (389)
Q Consensus       326 ~~~~~~--~-------~~~~~~~~~~~~--~v~~~~~-~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~~~  385 (389)
                      -..+.-  +       ...+...++|..  .|.++-| -|...|+++|+.-|.|.|    |+-.+++++.+|
T Consensus       365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFi----W~K~t~eii~~M  432 (559)
T KOG1334|consen  365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFI----WDKKTGEIIRFM  432 (559)
T ss_pred             cccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEE----EecchhHHHHHh
Confidence            432211  0       001111156654  4777755 578899999999999999    999999988766

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=1e-15  Score=122.33  Aligned_cols=255  Identities=13%  Similarity=0.175  Sum_probs=180.5

Q ss_pred             CcEEEEEECCCC--cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458          110 AWVMTCAFSPTG--QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (389)
Q Consensus       110 ~~v~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  187 (389)
                      ..+..++|.-++  ..+...+.+..+..+.+....... ............++|..++...   ..|++|-.+|.+.+|.
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s-~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~~  131 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISS-SLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVRH  131 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCcccc-ccccccccccccccccchhhcC---CEEEEEecCCcEEEEe
Confidence            457777776544  344444456666666665533111 1011123334456677766654   3688999999999999


Q ss_pred             CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC--CceEEEeCCCCCcceeEEee---------eccceEEE
Q 016458          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--STARLWDTRVASRAVRTFHG---------HEGDVNTV  256 (389)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~---------~~~~i~~~  256 (389)
                      ...+.........  ......+..+.-++....++++|+..  ..+.+||+... +.+..-..         -.-.++.+
T Consensus       132 ~k~~d~hss~l~~--la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi  208 (412)
T KOG3881|consen  132 DKSGDLHSSKLIK--LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDI  208 (412)
T ss_pred             ccCCcccccccee--eecCCceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccc
Confidence            8854311110000  12335566777777677888889998  89999999866 33222111         11236788


Q ss_pred             EEecC--CCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEe
Q 016458          257 KFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN  334 (389)
Q Consensus       257 ~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  334 (389)
                      .|-+.  ...|++++.-+.+++||.+.++.........    ..+++++...|+|+++++|..-|.+..||++.++....
T Consensus       209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~----E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~  284 (412)
T KOG3881|consen  209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL----ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC  284 (412)
T ss_pred             eecCCCCCceEEEEecceeEEEecCcccCcceeEeccc----cCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence            89887  7899999999999999999776544332222    22599999999999999999999999999999998877


Q ss_pred             ecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          335 LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       335 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      ..   .+..+.|+++..+|..++|+++|-|..+||    +|+++.++.
T Consensus       285 ~~---kg~tGsirsih~hp~~~~las~GLDRyvRI----hD~ktrkll  325 (412)
T KOG3881|consen  285 GL---KGITGSIRSIHCHPTHPVLASCGLDRYVRI----HDIKTRKLL  325 (412)
T ss_pred             cc---CCccCCcceEEEcCCCceEEeeccceeEEE----eecccchhh
Confidence            22   788999999999999999999999999999    999996654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.74  E-value=1.6e-15  Score=119.26  Aligned_cols=287  Identities=18%  Similarity=0.277  Sum_probs=184.9

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC-----eeEEEeeCC------------CcEEEEEECCCC--cEEEEe
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-----KTHAIKLPC------------AWVMTCAFSPTG--QSVACG  127 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~  127 (389)
                      .+-|.++.|...|.+||||..+|.|.+|.-....     ....++.|.            +.|..+.|.+++  ..++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4468999999999999999999999999654332     122233332            468899998865  457778


Q ss_pred             cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458          128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (389)
Q Consensus       128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  207 (389)
                      +.|.+|++|.+.....+.....  ....+..+.++.+..       -+.+..|-.+.      ..+...+    ...|..
T Consensus       105 tNdktiKlWKi~er~~k~~~~~--~~~~~~~~~~~~lr~-------p~~~~~~~~ve------a~prRv~----aNaHty  165 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYN--LPEEGPPGTITSLRL-------PVEGRHDLEVE------ASPRRVY----ANAHTY  165 (433)
T ss_pred             cCCcceeeeeeecccccccccc--ccccCCCCccceeec-------eeeccccceee------eeeeeec----ccccee
Confidence            8899999999987442211100  001111222222221       11111111110      0112222    267888


Q ss_pred             CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE--eeec-----cceEEEEEec-CCCEEEEEecCCeEEEEEC
Q 016458          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--HGHE-----GDVNTVKFFP-DGNRFGTGSDDGTCRLFDI  279 (389)
Q Consensus       208 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~-----~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~  279 (389)
                      .|.++.++. +...++++ .|-.|.+|++.-..+.....  ++++     .-|++..|+| ..+.++-.+..|+|++-|+
T Consensus       166 hiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm  243 (433)
T KOG1354|consen  166 HINSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM  243 (433)
T ss_pred             EeeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence            999999997 66666654 57889999987654443332  3332     3588999999 5678888889999999999


Q ss_pred             CCCceeeEe----eccCCC-------CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc-cceEEEeecCcCCCCC----
Q 016458          280 RTGHQLQVY----YQQHGE-------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHE----  343 (389)
Q Consensus       280 ~~~~~~~~~----~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~----  343 (389)
                      +........    ..+..+       .-...|..+.|+++|+|+++-+.- +|.+||+. ..+++.+.    ..|.    
T Consensus       244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~----~vh~~lr~  318 (433)
T KOG1354|consen  244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETY----PVHEYLRS  318 (433)
T ss_pred             hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEE----eehHhHHH
Confidence            854322111    111111       112358899999999999987554 89999994 45555555    2332    


Q ss_pred             --------CC---eeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          344 --------GR---ITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       344 --------~~---v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                              ..   -..++|+.++.+++||+....+++    +++..|....
T Consensus       319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frv----f~~~~gsk~d  365 (433)
T KOG1354|consen  319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRV----FNLARGSKED  365 (433)
T ss_pred             HHHHHhhccchhheeEEEEcCCcceEecccccceEEE----ecCCCCccee
Confidence                    12   245789999999999999999999    9977775543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.74  E-value=8e-14  Score=118.73  Aligned_cols=291  Identities=16%  Similarity=0.170  Sum_probs=181.2

Q ss_pred             EEEEecC----CcEEEEeC--CCCCeeEEE-eeCCCcEEEEEECCCCcEEEEecC----CCcEEEEeCCCCCCCCCCCcc
Q 016458           82 IVSASQD----GRLIVWNA--LTSQKTHAI-KLPCAWVMTCAFSPTGQSVACGGL----DSVCSIFNLNSPTDKDGNLPV  150 (389)
Q Consensus        82 l~~~~~d----g~v~iw~~--~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~  150 (389)
                      +++|+.+    +.|.+|++  .+++....- .........++++|++++|++...    ++.|..|++....   ..+..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~---g~L~~   78 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT---GTLTL   78 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT---TEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc---ceeEE
Confidence            4455555    68999888  344332211 123455778999999999998866    5789999987632   22333


Q ss_pred             eeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEec---C-----cccCCCCCCeeEEEeeCCCCcE
Q 016458          151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFG---G-----EFQSGHTADVLSVSISGSNSRM  221 (389)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~---~-----~~~~~~~~~v~~~~~~~~~~~~  221 (389)
                      .............++++|++..++++...+|.|.++++... .......   .     ...........++.++| ++++
T Consensus        79 ~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~  157 (345)
T PF10282_consen   79 LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRF  157 (345)
T ss_dssp             EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSE
T ss_pred             eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCE
Confidence            33343334556678999998555555557999999999874 3322211   0     00112345678999999 6555


Q ss_pred             EEEe-eCCCceEEEeCCCCCcceeE---Ee-eeccceEEEEEecCCCEEEEEe-cCCeEEEEECC--CCce--eeEeecc
Q 016458          222 FVSG-SCDSTARLWDTRVASRAVRT---FH-GHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIR--TGHQ--LQVYYQQ  291 (389)
Q Consensus       222 l~~~-~~dg~i~i~d~~~~~~~~~~---~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~--~~~~~~~  291 (389)
                      +++. -....|.+|++......+..   +. ......+.+.|+|+++++++.. .++.|.+|++.  .+..  .......
T Consensus       158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~  237 (345)
T PF10282_consen  158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL  237 (345)
T ss_dssp             EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred             EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence            5554 44568999999765322322   21 2345678999999999886665 57889999988  3322  2222211


Q ss_pred             C-CCCCCCCeeEEEeCCCCCEEEEEec-CCcEEEEEcc--cce--EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC-C
Q 016458          292 H-GENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTL--LAK--VVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-D  364 (389)
Q Consensus       292 ~-~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d  364 (389)
                      . ..........++++|||++|+++.. .+.|.+|++.  +++  .+..+    .........++++|+|++|+++.. +
T Consensus       238 ~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~----~~~G~~Pr~~~~s~~g~~l~Va~~~s  313 (345)
T PF10282_consen  238 PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV----PTGGKFPRHFAFSPDGRYLYVANQDS  313 (345)
T ss_dssp             ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE----EESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred             cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE----eCCCCCccEEEEeCCCCEEEEEecCC
Confidence            1 1111225788999999999888764 5689999983  232  23333    223345799999999999998874 5


Q ss_pred             CeeEEeecceec--ccCcccCc
Q 016458          365 TNLKVNLGFWRV--QEGALSPW  384 (389)
Q Consensus       365 g~i~i~~~~W~~--~~~~~~~~  384 (389)
                      +.|.+    |++  ++|++...
T Consensus       314 ~~v~v----f~~d~~tG~l~~~  331 (345)
T PF10282_consen  314 NTVSV----FDIDPDTGKLTPV  331 (345)
T ss_dssp             TEEEE----EEEETTTTEEEEE
T ss_pred             CeEEE----EEEeCCCCcEEEe
Confidence            78888    765  57777653

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.73  E-value=5.7e-16  Score=121.74  Aligned_cols=256  Identities=15%  Similarity=0.226  Sum_probs=186.9

Q ss_pred             CcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEe-CCCCCeeEEEe-eCCCcEEEEEECCCCcEEEEecCCCc
Q 016458           55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN-ALTSQKTHAIK-LPCAWVMTCAFSPTGQSVACGGLDSV  132 (389)
Q Consensus        55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (389)
                      ..+...+.++||.+.|++...-|..+-+++.+.|.+++||- .+.++.-..+. .-..+++++.+.++...|++|-.+|+
T Consensus        12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt   91 (404)
T KOG1409|consen   12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT   91 (404)
T ss_pred             cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence            34567788999999999999999888999999999999994 34444433332 23467899999999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (389)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  212 (389)
                      +.-+.+...-   ......+....|...+..+.|+-.. ..+++.+.|..+.---.+.+..+..+..      ....+++
T Consensus        92 vtefs~sedf---nkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~------~~~~t~~  161 (404)
T KOG1409|consen   92 VTEFALSEDF---NKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNF------ETPASAL  161 (404)
T ss_pred             EEEEEhhhhh---hhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEe------eccCCCC
Confidence            9998877532   2344566677899999999998765 6888889888776555555544433311      1111122


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEeCCCC-CcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeecc
Q 016458          213 SISGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ  291 (389)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  291 (389)
                      .+.-   .+...|...|.|....+... -.++..+.+|.+.+.+++|.|....|.+|..|..+.+||+-..+........
T Consensus       162 ~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g  238 (404)
T KOG1409|consen  162 QFDA---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG  238 (404)
T ss_pred             ceee---EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence            2211   14556666677666554322 2577888999999999999999999999999999999999765544433332


Q ss_pred             CCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          292 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      +.    ..+..+..-+--+.+++++.||.|.+|+++
T Consensus       239 h~----~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  239 HN----DKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             ch----hhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            22    237777777777889999999999999864

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.73  E-value=7.6e-16  Score=118.84  Aligned_cols=155  Identities=25%  Similarity=0.363  Sum_probs=109.8

Q ss_pred             eeEEEeeCCCCcEEEEeeC---------CCceEEEeCCCCCcceeEEee-eccceEEEEEecCCCEEEEE--ecCCeEEE
Q 016458          209 VLSVSISGSNSRMFVSGSC---------DSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTG--SDDGTCRL  276 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~--~~dg~i~i  276 (389)
                      -..+.|+|.+..+++....         -|...+|.++....+...+.- ..++|.+++|+|+|+.|++.  ..++.|.+
T Consensus         8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            3457788733334433331         234556665444445555543 34579999999999987654  36779999


Q ss_pred             EECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec---CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458          277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (389)
Q Consensus       277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (389)
                      ||++ ++.+..+..  .     .++.+.|+|+|++|++++.   .|.|.+||..+.+.+...     .| ..++.++|+|
T Consensus        88 yd~~-~~~i~~~~~--~-----~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-----~~-~~~t~~~WsP  153 (194)
T PF08662_consen   88 YDVK-GKKIFSFGT--Q-----PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-----EH-SDATDVEWSP  153 (194)
T ss_pred             EcCc-ccEeEeecC--C-----CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc-----cc-CcEEEEEEcC
Confidence            9997 555555432  1     3788999999999999864   467999999988888765     23 3478999999


Q ss_pred             CCCeEEeeeC------CCeeEEeecceecccCcc
Q 016458          354 DGSALCTGSW------DTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       354 ~~~~l~~~~~------dg~i~i~~~~W~~~~~~~  381 (389)
                      ||++|+++..      |+.++|    |++....+
T Consensus       154 dGr~~~ta~t~~r~~~dng~~I----w~~~G~~l  183 (194)
T PF08662_consen  154 DGRYLATATTSPRLRVDNGFKI----WSFQGRLL  183 (194)
T ss_pred             CCCEEEEEEeccceeccccEEE----EEecCeEe
Confidence            9999999875      778888    99964433

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=1.5e-14  Score=121.14  Aligned_cols=278  Identities=17%  Similarity=0.255  Sum_probs=177.5

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEe-----cC-----CCcEEEE
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-----GL-----DSVCSIF  136 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-----dg~i~vw  136 (389)
                      ..+++..+++++|+++|.+.. ..++|++..++..+.+....  .+.++.|+|.+.+|.+-     ..     .-.+.+|
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~  110 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY  110 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence            445778889999988877654 58999999888744444333  68999999999998762     11     2347799


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  216 (389)
                      ++.+....     .....+...+  ++..|+.|.  .+++--..+.+.+|++.+......      .-|...+..+.++|
T Consensus       111 ~vet~~~~-----s~~q~k~Q~~--W~~qfs~dE--sl~arlv~nev~f~~~~~f~~~~~------kl~~~~i~~f~lSp  175 (566)
T KOG2315|consen  111 NVETGVQR-----SQIQKKMQNG--WVPQFSIDE--SLAARLVSNEVQFYDLGSFKTIQH------KLSVSGITMLSLSP  175 (566)
T ss_pred             eeccceeh-----hheehhhhcC--cccccccch--hhhhhhhcceEEEEecCCccceee------eeeccceeeEEecC
Confidence            98873211     0111111122  577888875  344444456788888776433222      23445556666655


Q ss_pred             C-CCcEEEE-----eeCCCceEEEe-------------------------------------------------------
Q 016458          217 S-NSRMFVS-----GSCDSTARLWD-------------------------------------------------------  235 (389)
Q Consensus       217 ~-~~~~l~~-----~~~dg~i~i~d-------------------------------------------------------  235 (389)
                      . ....+++     .+.-+.++||.                                                       
T Consensus       176 gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyl  255 (566)
T KOG2315|consen  176 GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYL  255 (566)
T ss_pred             CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEE
Confidence            3 1222221     12223344443                                                       


Q ss_pred             --CCCCCcceeEEeeeccceEEEEEecCCCEEEE--EecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCE
Q 016458          236 --TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT--GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL  311 (389)
Q Consensus       236 --~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  311 (389)
                        +. + .....--...++|.++.|+|++.-+++  |-.-..+.|||++ +..+..+...       +-+++-|+|.|++
T Consensus       256 l~t~-g-~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~eg-------pRN~~~fnp~g~i  325 (566)
T KOG2315|consen  256 LATQ-G-ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEG-------PRNTAFFNPHGNI  325 (566)
T ss_pred             EEec-C-ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCC-------CccceEECCCCCE
Confidence              32 1 111111123689999999999987655  4467789999987 4555554332       2578999999998


Q ss_pred             EEEEec---CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC------CeeEEeecceecccCccc
Q 016458          312 LFAGYS---NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD------TNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       312 l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~~~~W~~~~~~~~  382 (389)
                      ++.++-   .|.|-|||+.+.+.+..+    ...  .-+-+.|+|||++++|+...      +.++|    |+.....+.
T Consensus       326 i~lAGFGNL~G~mEvwDv~n~K~i~~~----~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Ki----whytG~~l~  395 (566)
T KOG2315|consen  326 ILLAGFGNLPGDMEVWDVPNRKLIAKF----KAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKI----WHYTGSLLH  395 (566)
T ss_pred             EEEeecCCCCCceEEEeccchhhcccc----ccC--CceEEEEcCCCcEEEEEeccccEEecCCeEE----EEecCceee
Confidence            887654   579999999998888777    333  23557899999999998864      55666    998754443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.72  E-value=4.6e-16  Score=129.23  Aligned_cols=238  Identities=17%  Similarity=0.265  Sum_probs=157.0

Q ss_pred             EEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEe-----eCCCcEEEEeeCCCeEEEE
Q 016458          112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV-----PDEDTHLITSSGDQTCVLW  186 (389)
Q Consensus       112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~l~~~~~dg~i~iw  186 (389)
                      +....++-.|.+|+..- ...+++|+.........  ++.+.+... ....|-.|+     +.+ --++.|-.-|.|.+.
T Consensus       126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~--pi~k~~y~g-t~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~i  200 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSK--PIDKREYKG-TSPTCHDFNSFTATPKG-LDLLIGFTTGQVQLI  200 (636)
T ss_pred             eeeccccCCCCEEEEec-CCeEEEEEccCcchhcc--chhhhcccC-CCCceecccccccCCCC-cceEEeeccCceEEe
Confidence            44555555677776543 34688999886332111  122222111 222333442     333 447778888999999


Q ss_pred             eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEE--EecCCCE
Q 016458          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK--FFPDGNR  264 (389)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~  264 (389)
                      |....+....+... .......++++.|-|.+...++++-.+|.+++||....           ...+...  ..+++..
T Consensus       201 dp~~~~~sklfne~-r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----------~~~t~p~~~~~k~~~~  268 (636)
T KOG2394|consen  201 DPINFEVSKLFNEE-RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----------CGATAPSYQALKDGDQ  268 (636)
T ss_pred             cchhhHHHHhhhhc-ccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----------ccCCCCcccccCCCCe
Confidence            87764333322211 12344789999999988889999999999999987321           1111111  2234544


Q ss_pred             EEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCC
Q 016458          265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG  344 (389)
Q Consensus       265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (389)
                      +.....-+      ..+..++..+.....     .|..++|+|||++||+.+.||.++|||..+.+.+..+    +.--+
T Consensus       269 f~i~t~ks------k~~rNPv~~w~~~~g-----~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m----kSYFG  333 (636)
T KOG2394|consen  269 FAILTSKS------KKTRNPVARWHIGEG-----SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM----KSYFG  333 (636)
T ss_pred             eEEeeeec------cccCCccceeEeccc-----cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH----Hhhcc
Confidence            54432211      111133444433333     3899999999999999999999999999998888777    45567


Q ss_pred             CeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccCcc
Q 016458          345 RITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPWG  385 (389)
Q Consensus       345 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~~~  385 (389)
                      ...|++|||||+||++|+.|..|.|    |.+.+++++.|+
T Consensus       334 GLLCvcWSPDGKyIvtGGEDDLVtV----wSf~erRVVARG  370 (636)
T KOG2394|consen  334 GLLCVCWSPDGKYIVTGGEDDLVTV----WSFEERRVVARG  370 (636)
T ss_pred             ceEEEEEcCCccEEEecCCcceEEE----EEeccceEEEec
Confidence            8999999999999999999999999    999999998763

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=3.1e-14  Score=125.27  Aligned_cols=216  Identities=16%  Similarity=0.105  Sum_probs=142.3

Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC---CCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG---DQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~  207 (389)
                      ..|.+||.....        ...+..+...+.+..|+|++. .++..+.   ...|.+||+.++......      ....
T Consensus       184 ~~l~i~D~~g~~--------~~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~------~~~g  248 (433)
T PRK04922        184 YALQVADSDGYN--------PQTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVA------SFRG  248 (433)
T ss_pred             EEEEEECCCCCC--------ceEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEec------cCCC
Confidence            358888876432        234455667889999999985 5555442   347999999887664432      2334


Q ss_pred             CeeEEEeeCCCCcEEEEeeCCC--ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec-CCe--EEEEECCCC
Q 016458          208 DVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGT--CRLFDIRTG  282 (389)
Q Consensus       208 ~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~  282 (389)
                      ...+..|+|++..++++.+.+|  .|++||+.++ . ...+..+.......+|+|||+.|+..+. +|.  |+++|+.++
T Consensus       249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g-~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g  326 (433)
T PRK04922        249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR-Q-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG  326 (433)
T ss_pred             CccCceECCCCCEEEEEEeCCCCceEEEEECCCC-C-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            4557899994444545656665  5899998865 3 3445555555677899999998887764 444  777777666


Q ss_pred             ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC---cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEE
Q 016458          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC  359 (389)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  359 (389)
                      +..... ....     .....+|+|+|++|+..+.++   .|.+||+.+++.. .+.     +........|+|||++|+
T Consensus       327 ~~~~lt-~~g~-----~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-----~~~~~~~p~~spdG~~i~  394 (433)
T PRK04922        327 SAERLT-FQGN-----YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-----PGSLDESPSFAPNGSMVL  394 (433)
T ss_pred             CeEEee-cCCC-----CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-----CCCCCCCceECCCCCEEE
Confidence            543322 1111     244689999999988765443   5999999877654 331     222345678999999888


Q ss_pred             eeeCC---CeeEEeecceecccC
Q 016458          360 TGSWD---TNLKVNLGFWRVQEG  379 (389)
Q Consensus       360 ~~~~d---g~i~i~~~~W~~~~~  379 (389)
                      ..+.+   +.+.+    +++..+
T Consensus       395 ~~s~~~g~~~L~~----~~~~g~  413 (433)
T PRK04922        395 YATREGGRGVLAA----VSTDGR  413 (433)
T ss_pred             EEEecCCceEEEE----EECCCC
Confidence            77654   34555    777544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=2.9e-14  Score=125.64  Aligned_cols=218  Identities=15%  Similarity=0.116  Sum_probs=145.4

Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee---CCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS---GDQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  207 (389)
                      ..|.++|.+...        ...+..|...+.+..|+|+|. .|+..+   .+..|.+||+.++.....      ..+..
T Consensus       182 ~~l~~~d~dg~~--------~~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~~l------~~~~g  246 (435)
T PRK05137        182 KRLAIMDQDGAN--------VRYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRELV------GNFPG  246 (435)
T ss_pred             eEEEEECCCCCC--------cEEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEEEe------ecCCC
Confidence            368888876532        344556778899999999985 455443   346899999998866433      24455


Q ss_pred             CeeEEEeeCCCCcEEEEeeCCCc--eEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec-CC--eEEEEECCCC
Q 016458          208 DVLSVSISGSNSRMFVSGSCDST--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTG  282 (389)
Q Consensus       208 ~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~  282 (389)
                      .+....|+|++..++++.+.++.  |++||+...  ....+..+........|+|||+.|+..+. +|  .|+++|+..+
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~--~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~  324 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG--TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS  324 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCC--ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence            67788999944444556666665  667787754  34555556666778999999999887764 33  6888898765


Q ss_pred             ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC---CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEE
Q 016458          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC  359 (389)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  359 (389)
                      .... +.....     .+....|+|+|++|+....+   ..|.+||+..+.. ..+.   .  ...+....|+|||+.|+
T Consensus       325 ~~~~-lt~~~~-----~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt---~--~~~~~~p~~spDG~~i~  392 (435)
T PRK05137        325 NPRR-ISFGGG-----RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT---S--GFLVEGPTWAPNGRVIM  392 (435)
T ss_pred             CeEE-eecCCC-----cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc---C--CCCCCCCeECCCCCEEE
Confidence            5433 322211     25668899999998876543   3588888765543 3331   1  22467889999999987


Q ss_pred             eeeCCC------eeEEeecceecccCcc
Q 016458          360 TGSWDT------NLKVNLGFWRVQEGAL  381 (389)
Q Consensus       360 ~~~~dg------~i~i~~~~W~~~~~~~  381 (389)
                      ..+.++      .+.+    .++..+..
T Consensus       393 ~~~~~~~~~~~~~L~~----~dl~g~~~  416 (435)
T PRK05137        393 FFRQTPGSGGAPKLYT----VDLTGRNE  416 (435)
T ss_pred             EEEccCCCCCcceEEE----EECCCCce
Confidence            765532      4555    77766544

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=5.7e-14  Score=123.04  Aligned_cols=216  Identities=13%  Similarity=0.105  Sum_probs=140.8

Q ss_pred             cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee--CCCeEEEEeCCCCeeEEEecCcccCCCCCCe
Q 016458          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS--GDQTCVLWDITTGLRTSVFGGEFQSGHTADV  209 (389)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  209 (389)
                      .|.++|.+...        ...+..+...+....|+|+|..++++..  .+..|.+||+.+++.....      ......
T Consensus       180 ~l~~~d~dg~~--------~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~------~~~~~~  245 (429)
T PRK03629        180 ELRVSDYDGYN--------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA------SFPRHN  245 (429)
T ss_pred             eEEEEcCCCCC--------CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc------CCCCCc
Confidence            68888887532        2333445678899999999854443332  3457999999887654432      223345


Q ss_pred             eEEEeeCCCCcEEE-EeeCCC--ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC-C--eEEEEECCCCc
Q 016458          210 LSVSISGSNSRMFV-SGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G--TCRLFDIRTGH  283 (389)
Q Consensus       210 ~~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~  283 (389)
                      ....|+| +++.|+ +.+.+|  .|++||+.++ . ...+..+...+....|+|||+.|+..+.+ +  .|.++|+.++.
T Consensus       246 ~~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg-~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~  322 (429)
T PRK03629        246 GAPAFSP-DGSKLAFALSKTGSLNLYVMDLASG-Q-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA  322 (429)
T ss_pred             CCeEECC-CCCEEEEEEcCCCCcEEEEEECCCC-C-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC
Confidence            5689999 565555 445455  4888998765 3 34444455567889999999988877654 4  45555776654


Q ss_pred             eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC---CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEe
Q 016458          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT  360 (389)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  360 (389)
                      .. .+.....     ......|+|||++|+..+.+   ..|.+||+.+++.. .+.   ..  .......|+|||++|+.
T Consensus       323 ~~-~lt~~~~-----~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt---~~--~~~~~p~~SpDG~~i~~  390 (429)
T PRK03629        323 PQ-RITWEGS-----QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT---DT--FLDETPSIAPNGTMVIY  390 (429)
T ss_pred             eE-EeecCCC-----CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeC---CC--CCCCCceECCCCCEEEE
Confidence            43 2222111     24568899999988876543   35888999877643 332   11  12346789999999999


Q ss_pred             eeCCCe---eEEeecceecccCc
Q 016458          361 GSWDTN---LKVNLGFWRVQEGA  380 (389)
Q Consensus       361 ~~~dg~---i~i~~~~W~~~~~~  380 (389)
                      ++.++.   +.+    |+++.+.
T Consensus       391 ~s~~~~~~~l~~----~~~~G~~  409 (429)
T PRK03629        391 SSSQGMGSVLNL----VSTDGRF  409 (429)
T ss_pred             EEcCCCceEEEE----EECCCCC
Confidence            998875   455    7775443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=7.7e-15  Score=123.09  Aligned_cols=248  Identities=17%  Similarity=0.224  Sum_probs=175.0

Q ss_pred             CCcEEEEEECCCCcEE-EEecCCCcEEEEeCCCCCCCCCCCcceeeecccc-cceEEEEEeeCCCcEEEEeeCCCeEEEE
Q 016458          109 CAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLW  186 (389)
Q Consensus       109 ~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iw  186 (389)
                      ...-+.|..+|||+|+ ++|...-.|++||+.+         +...+..|. ..+..+....+.-..++.-..|.+|-+-
T Consensus        51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan---------LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH  121 (703)
T KOG2321|consen   51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN---------LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH  121 (703)
T ss_pred             ccccceeEecCCCcEEEEecccCCceEEEEccc---------ceeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence            4557889999999986 5677789999999987         344444442 2333333333322345555667777654


Q ss_pred             eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEE
Q 016458          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG  266 (389)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  266 (389)
                      .-.......        .-+..-..++++..+..++++| ....|+-+++..+ .-+..+....+.++++..++...+|+
T Consensus       122 ak~G~hy~~--------RIP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~~hgLla  191 (703)
T KOG2321|consen  122 AKYGRHYRT--------RIPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQG-RFLNPFETDSGELNVVSINEEHGLLA  191 (703)
T ss_pred             hhcCeeeee--------ecCcCCccccccCCCccEEEee-cCcceEEEEcccc-ccccccccccccceeeeecCccceEE
Confidence            322211111        1223445667776555555554 4567888899887 77777777778999999999989999


Q ss_pred             EEecCCeEEEEECCCCceeeEeeccCC------CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCC
Q 016458          267 TGSDDGTCRLFDIRTGHQLQVYYQQHG------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN  340 (389)
Q Consensus       267 ~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  340 (389)
                      +|+.+|.|.+||.++......+.....      .+....|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-.   +
T Consensus       192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd---h  268 (703)
T KOG2321|consen  192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD---H  268 (703)
T ss_pred             ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc---c
Confidence            999999999999998776666544322      2334459999999999999999999999999999998887653   4


Q ss_pred             CCCCCeeEEEECCC--CCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          341 SHEGRITCLGLSAD--GSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       341 ~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      ...-+|..+.|.+.  +..+++. ....++|    |+-.+|+...
T Consensus       269 ~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~ki----Wd~~~Gk~~a  308 (703)
T KOG2321|consen  269 GYELPIKKLDWQDTDQQNKVVSM-DKRILKI----WDECTGKPMA  308 (703)
T ss_pred             CCccceeeecccccCCCceEEec-chHHhhh----cccccCCcee
Confidence            45568999999775  3444443 3467889    9999998754

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=2.3e-14  Score=125.60  Aligned_cols=208  Identities=18%  Similarity=0.180  Sum_probs=133.6

Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC---CCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG---DQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~  207 (389)
                      ..|.++|.+...        ...+..+...+.+.+|+|++. .++..+.   ...|.+||+.++......      ....
T Consensus       176 ~~L~~~D~dG~~--------~~~l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~------~~~g  240 (427)
T PRK02889        176 YQLQISDADGQN--------AQSALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVA------NFKG  240 (427)
T ss_pred             cEEEEECCCCCC--------ceEeccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEee------cCCC
Confidence            356666664321        233445667889999999985 4554443   246999999988765432      2334


Q ss_pred             CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec-CCeEEEEEC--CCCce
Q 016458          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDI--RTGHQ  284 (389)
Q Consensus       208 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~--~~~~~  284 (389)
                      ......|+|+...++++.+.+|...+|.++........+..+........|+|||+.|+..+. +|...+|.+  .++..
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~  320 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA  320 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce
Confidence            566889999444444566778877777654322344555555555677899999998886654 455556654  44433


Q ss_pred             eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC---cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  361 (389)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  361 (389)
                      .. +.....     ......|+|+|++|+..+.++   .|.+||+.+++... +.   ..  .......|+|||+.|+.+
T Consensus       321 ~~-lt~~g~-----~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt---~~--~~~~~p~~spdg~~l~~~  388 (427)
T PRK02889        321 QR-VTFTGS-----YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT---DT--TRDESPSFAPNGRYILYA  388 (427)
T ss_pred             EE-EecCCC-----CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc---CC--CCccCceECCCCCEEEEE
Confidence            22 221111     134578999999998776554   59999998876543 31   11  234678999999998887


Q ss_pred             eCCC
Q 016458          362 SWDT  365 (389)
Q Consensus       362 ~~dg  365 (389)
                      +.++
T Consensus       389 ~~~~  392 (427)
T PRK02889        389 TQQG  392 (427)
T ss_pred             EecC
Confidence            7654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.68  E-value=5.7e-14  Score=123.99  Aligned_cols=232  Identities=17%  Similarity=0.178  Sum_probs=149.8

Q ss_pred             cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC---CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE
Q 016458           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY  166 (389)
Q Consensus        90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (389)
                      .|.++|... .....+..+...+...+|+|+|++|+.+..+   ..|++|++.++.        ...+..+.+.+.++.|
T Consensus       171 ~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~--------~~~~~~~~~~~~~~~~  241 (417)
T TIGR02800       171 ELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ--------REKVASFPGMNGAPAF  241 (417)
T ss_pred             eEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC--------EEEeecCCCCccceEE
Confidence            577888753 4445555566678899999999999887643   479999998743        1223334455677899


Q ss_pred             eeCCCcEEEEeeCCC--eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCC--ceEEEeCCCCCc
Q 016458          167 VPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDS--TARLWDTRVASR  241 (389)
Q Consensus       167 ~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~  241 (389)
                      +|++..++++.+.++  .|++||+.++......      .+........|+| +++.|+..+ .++  .|+++|+...  
T Consensus       242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~------~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~--  312 (417)
T TIGR02800       242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT------NGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGG--  312 (417)
T ss_pred             CCCCCEEEEEECCCCCccEEEEECCCCCEEECC------CCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCC--
Confidence            999865555655544  5889999887654332      3334445678998 666555444 344  5777777654  


Q ss_pred             ceeEEeeeccceEEEEEecCCCEEEEEecCC---eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC
Q 016458          242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN  318 (389)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (389)
                      ....+..+...+....|+|++++++.++.++   .|.+||+.++... .+... ..     .....|+|+|++|+..+.+
T Consensus       313 ~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~-----~~~p~~spdg~~l~~~~~~  385 (417)
T TIGR02800       313 EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GL-----DESPSFAPNGRMILYATTR  385 (417)
T ss_pred             CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CC-----CCCceECCCCCEEEEEEeC
Confidence            2344444556677889999999999888776   7999998875432 22211 11     3445899999988887665


Q ss_pred             C---cEEEEEcccceEEEeecCcCCCCCCCeeEEEE
Q 016458          319 G---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  351 (389)
Q Consensus       319 g---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  351 (389)
                      +   .+++.+. .+.....+    ..+.+.+..++|
T Consensus       386 ~~~~~l~~~~~-~g~~~~~~----~~~~g~~~~~~w  416 (417)
T TIGR02800       386 GGRGVLGLVST-DGRFRARL----PLGNGDVREPAW  416 (417)
T ss_pred             CCcEEEEEEEC-CCceeeEC----CCCCCCcCCCCC
Confidence            4   3555554 34444444    223444555544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.68  E-value=1.4e-14  Score=111.77  Aligned_cols=157  Identities=17%  Similarity=0.325  Sum_probs=108.3

Q ss_pred             EEEEEeeCCCcEEEEeeC---------CCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEEeeCCCCcEEE-E-eeCCC
Q 016458          162 SCCQYVPDEDTHLITSSG---------DQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-S-GSCDS  229 (389)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~-~~~dg  229 (389)
                      ..+.|+++|+.+++....         -|...+|.++.. .....+.    ....++|.+++|+| +++.|+ + |..++
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~----l~~~~~I~~~~WsP-~g~~favi~g~~~~   83 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE----LKKEGPIHDVAWSP-NGNEFAVIYGSMPA   83 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee----ccCCCceEEEEECc-CCCEEEEEEccCCc
Confidence            357788888655555441         133455554222 2222221    23455799999999 555543 3 44678


Q ss_pred             ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec---CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeC
Q 016458          230 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  306 (389)
Q Consensus       230 ~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  306 (389)
                      .|.+||++  ...+..+  +...++.+.|+|+|++|++++.   .|.|.+||.++.+.+......       .++.++|+
T Consensus        84 ~v~lyd~~--~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-------~~t~~~Ws  152 (194)
T PF08662_consen   84 KVTLYDVK--GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-------DATDVEWS  152 (194)
T ss_pred             ccEEEcCc--ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-------cEEEEEEc
Confidence            99999997  3555555  3567889999999999999874   467999999977776654321       27899999


Q ss_pred             CCCCEEEEEec------CCcEEEEEcccceEEEee
Q 016458          307 ISGRLLFAGYS------NGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       307 ~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~  335 (389)
                      |+|+++++++.      |+.++||+.. |+.+...
T Consensus       153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             CCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence            99999999864      6789999984 6655544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.68  E-value=1.7e-12  Score=110.58  Aligned_cols=273  Identities=15%  Similarity=0.170  Sum_probs=170.4

Q ss_pred             cCcEEEEEEcCCCCeEEEEec----CCcEEEEeCCCC--C--eeEEEeeCCCcEEEEEECCCCcEEEEecC-CCcEEEEe
Q 016458           67 AGKVYSLDWTSERNRIVSASQ----DGRLIVWNALTS--Q--KTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFN  137 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~----dg~v~iw~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~  137 (389)
                      ......++++|++++|.++..    +|.|..|++...  +  .+............++++|++++|+++.. +|.|.+++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            345677999999999988876    578999988764  2  33334434556778999999999988864 89999999


Q ss_pred             CCCCCCCCCCCcce-eee----------cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe--eEEEecCcccCC
Q 016458          138 LNSPTDKDGNLPVS-RML----------SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL--RTSVFGGEFQSG  204 (389)
Q Consensus       138 ~~~~~~~~~~~~~~-~~~----------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~  204 (389)
                      +.....    .... ...          ........++.++|++..++++.-....|.+|++....  .....  .....
T Consensus       116 l~~~g~----l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~--~~~~~  189 (345)
T PF10282_consen  116 LDDDGS----LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD--SIKVP  189 (345)
T ss_dssp             ECTTSE----EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE--EEECS
T ss_pred             ccCCcc----cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee--ccccc
Confidence            987321    1111 111          01234567899999985555555556789999997765  22211  11135


Q ss_pred             CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCccee---EEeee------ccceEEEEEecCCCEEEEEe-cCCeE
Q 016458          205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR---TFHGH------EGDVNTVKFFPDGNRFGTGS-DDGTC  274 (389)
Q Consensus       205 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~------~~~i~~~~~~~~~~~l~~~~-~dg~i  274 (389)
                      .....+.+.|+|+...++++...++.|.++++......+.   .....      ......++++|||++|+++. .++.|
T Consensus       190 ~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI  269 (345)
T PF10282_consen  190 PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI  269 (345)
T ss_dssp             TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred             cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence            5667899999994444555666688899999883222221   22111      12467899999999987765 56789


Q ss_pred             EEEECCC--CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec-CCcEEEEEc--ccceEEEeecCcCCCCCCCeeEE
Q 016458          275 RLFDIRT--GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDT--LLAKVVLNLGSLQNSHEGRITCL  349 (389)
Q Consensus       275 ~i~d~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~~~~~v~~~  349 (389)
                      .+|++..  +.....-....   .......++++|+|++|++++. ++.|.+|++  .+|.....-.   ...-....||
T Consensus       270 ~vf~~d~~~g~l~~~~~~~~---~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~---~~~~~~p~ci  343 (345)
T PF10282_consen  270 SVFDLDPATGTLTLVQTVPT---GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS---SVPIPSPVCI  343 (345)
T ss_dssp             EEEEECTTTTTEEEEEEEEE---SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE---EEESSSEEEE
T ss_pred             EEEEEecCCCceEEEEEEeC---CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc---cccCCCCEEE
Confidence            9999943  33222111111   1123689999999999998874 568999876  4565544331   1123345666


Q ss_pred             EE
Q 016458          350 GL  351 (389)
Q Consensus       350 ~~  351 (389)
                      .|
T Consensus       344 ~f  345 (345)
T PF10282_consen  344 VF  345 (345)
T ss_dssp             EE
T ss_pred             eC
Confidence            65

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=1.2e-13  Score=121.53  Aligned_cols=234  Identities=14%  Similarity=0.120  Sum_probs=144.5

Q ss_pred             cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC-C--CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE
Q 016458           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-D--SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY  166 (389)
Q Consensus        90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (389)
                      .+.++|..... ...+......+....|+|+|+.|+..+. +  ..|.+||+.++..        ..+....+......|
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--------~~lt~~~g~~~~~~w  269 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--------EKVTSFPGINGAPRF  269 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--------EEecCCCCCcCCeeE
Confidence            56667765443 3445556677889999999999887644 2  3588888876431        111212233346799


Q ss_pred             eeCCCcEEEEeeCCCe--EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEE-EeeCCCc--eEEEeCCCCCc
Q 016458          167 VPDEDTHLITSSGDQT--CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDST--ARLWDTRVASR  241 (389)
Q Consensus       167 ~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~  241 (389)
                      +|++..++++.+.+|.  |.++|+.+++.....      .+........|+| +++.++ +...++.  |+++|+.++ +
T Consensus       270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt------~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g-~  341 (448)
T PRK04792        270 SPDGKKLALVLSKDGQPEIYVVDIATKALTRIT------RHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASG-K  341 (448)
T ss_pred             CCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc------cCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCC-C
Confidence            9999666666677775  888898877654332      3344567789999 555554 4444444  556676654 2


Q ss_pred             ceeEEeeeccceEEEEEecCCCEEEEEecC-C--eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC
Q 016458          242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN  318 (389)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (389)
                       ...+..........+|+|||++|+..+.+ +  .|.++|+.++.... +.... .     .....|+|+|++|+..+.+
T Consensus       342 -~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~-~-----d~~ps~spdG~~I~~~~~~  413 (448)
T PRK04792        342 -VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR-L-----DESPSVAPNGTMVIYSTTY  413 (448)
T ss_pred             -EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC-C-----CCCceECCCCCEEEEEEec
Confidence             23332222233457899999998876653 3  46667887765432 22211 1     1234799999987765543


Q ss_pred             -C--cEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458          319 -G--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (389)
Q Consensus       319 -g--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (389)
                       |  .+++++. ++.....+    ..+.+.+...+|+|
T Consensus       414 ~g~~~l~~~~~-~G~~~~~l----~~~~g~~~~p~Wsp  446 (448)
T PRK04792        414 QGKQVLAAVSI-DGRFKARL----PAGQGEVKSPAWSP  446 (448)
T ss_pred             CCceEEEEEEC-CCCceEEC----cCCCCCcCCCccCC
Confidence             3  3677776 45555555    34556677788887

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.66  E-value=9.9e-14  Score=107.06  Aligned_cols=276  Identities=15%  Similarity=0.114  Sum_probs=183.4

Q ss_pred             CCcEEEEeCCCCCeeE---EEeeCCCcEEEEEECC---CCc-EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccc
Q 016458           88 DGRLIVWNALTSQKTH---AIKLPCAWVMTCAFSP---TGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY  160 (389)
Q Consensus        88 dg~v~iw~~~~~~~~~---~~~~~~~~v~~~~~~~---~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  160 (389)
                      -|.+.+|++.+.+...   ........+..+.|.-   +|. .++-+...|.|.+|........ ..+......+-....
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss-~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS-VHLRGLSSKKISVVE  123 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee-eeecccchhhhhhee
Confidence            4678899887765443   1223345577777753   444 5667778899999987653211 000001111111113


Q ss_pred             eEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEE--EecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC
Q 016458          161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS--VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV  238 (389)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  238 (389)
                      ..++.|++.+ ..++++..+|.+.+-+........  ..     +.|.-++..+.|+..+++++++|+.|+.+..||+|.
T Consensus       124 ~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le~vq~w-----k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~  197 (339)
T KOG0280|consen  124 ALSLDISTSG-TKIFVSDSRGSISGVYETEMVLEKVQTW-----KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI  197 (339)
T ss_pred             eeEEEeeccC-ceEEEEcCCCcEEEEecceeeeeecccc-----cccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence            4577888887 568888899999976665554433  44     689999999999988889999999999999999996


Q ss_pred             CCcceeE-EeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCC-CceeeEeeccCCCCCCCCeeEEEeCCCCC--EEE
Q 016458          239 ASRAVRT-FHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGR--LLF  313 (389)
Q Consensus       239 ~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~  313 (389)
                      +...+.. .+.|...|.+|.-+| .+.+|++|+.|-.|++||.++ ++++..-...      +.|..+..+|.-.  .|+
T Consensus       198 p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~------GGVWRi~~~p~~~~~lL~  271 (339)
T KOG0280|consen  198 PKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG------GGVWRIKHHPEIFHRLLA  271 (339)
T ss_pred             CcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc------cceEEEEecchhhhHHHH
Confidence            5444433 566889999999887 678999999999999999995 4444433222      3499999998533  444


Q ss_pred             EEecCCcEEEEEcccceEE-EeecCcCCCCCCCeeEEEECCCCCeEEeee-CCCeeE-EeecceecccCcc
Q 016458          314 AGYSNGDCYVWDTLLAKVV-LNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLK-VNLGFWRVQEGAL  381 (389)
Q Consensus       314 ~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~-i~~~~W~~~~~~~  381 (389)
                      ++-.+| ..|-+.+.+... .........|.+-+..-.|.....+|+|++ .|..++ +    |-.-++..
T Consensus       272 ~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~----Wl~~t~~~  337 (339)
T KOG0280|consen  272 ACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQL----WLHITGEP  337 (339)
T ss_pred             HHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeee----eeeccCCc
Confidence            444443 666666543221 111111267777777777865556788865 477755 6    87776654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=8.9e-14  Score=116.40  Aligned_cols=284  Identities=15%  Similarity=0.196  Sum_probs=172.3

Q ss_pred             EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC-----------CCcEEEEeC
Q 016458           70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-----------DSVCSIFNL  138 (389)
Q Consensus        70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~vw~~  138 (389)
                      =+-+.|||.|.||+|--.-| |.+|--.+-..++.+..+  .|.-+.|||+.++|++-+.           ...++|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp--~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP--GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC--CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            35689999999999988876 889976666666655433  4899999999999998543           257999999


Q ss_pred             CCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458          139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN  218 (389)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  218 (389)
                      .++......    ..+......-.-..|+.++ .+++.-.. ..|.||+..+...+..-     ...-..|....|+| .
T Consensus       290 ~tG~lkrsF----~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf~lld~K-----slki~gIr~FswsP-~  357 (698)
T KOG2314|consen  290 ATGLLKRSF----PVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSFMLLDKK-----SLKISGIRDFSWSP-T  357 (698)
T ss_pred             cccchhcce----eccCCCccccceEEeccCC-ceeEEecc-ceEEEEecCceeeeccc-----ccCCccccCcccCC-C
Confidence            997632111    1111111222346788886 67766555 56888887653332221     22333455555555 3


Q ss_pred             CcEEEEee---------------------------------------------------------CCCceEEEeCCCCCc
Q 016458          219 SRMFVSGS---------------------------------------------------------CDSTARLWDTRVASR  241 (389)
Q Consensus       219 ~~~l~~~~---------------------------------------------------------~dg~i~i~d~~~~~~  241 (389)
                      +++|+-=+                                                         .-..+.|+.++...-
T Consensus       358 ~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI  437 (698)
T KOG2314|consen  358 SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI  437 (698)
T ss_pred             cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC
Confidence            33333210                                                         001222333332222


Q ss_pred             ceeEEeeeccceEEEEEecCCCEEEEEec---CCeEEEEECCC-CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE--
Q 016458          242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG--  315 (389)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--  315 (389)
                      ++.... -...|...+|-|.|+.+++-+.   ..++.+|.+.+ ..........    .....+.+.|+|.|++++++  
T Consensus       438 pve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~----dk~~~N~vfwsPkG~fvvva~l  512 (698)
T KOG2314|consen  438 PVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL----DKKFANTVFWSPKGRFVVVAAL  512 (698)
T ss_pred             Cceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh----cccccceEEEcCCCcEEEEEEe
Confidence            222222 3456788999999998877654   35688888874 2211111111    11237889999999988875  


Q ss_pred             -ecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecc--eecc
Q 016458          316 -YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGF--WRVQ  377 (389)
Q Consensus       316 -~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~--W~~~  377 (389)
                       +..|.+.++|+.......+-    .......+.+.|.|.|+|++|+++-...++..+|  |++.
T Consensus       513 ~s~~g~l~F~D~~~a~~k~~~----~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  513 VSRRGDLEFYDTDYADLKDTA----SPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             cccccceEEEecchhhhhhcc----CccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence             45789999998743222221    2223356789999999999999876655543332  5554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=3.5e-13  Score=119.09  Aligned_cols=235  Identities=14%  Similarity=0.109  Sum_probs=147.0

Q ss_pred             cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC---CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE
Q 016458           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY  166 (389)
Q Consensus        90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (389)
                      .|.++|...+. ...+..+...+....|+|+|+.|+..+.+   ..|.+|++.++..        ..+....+.+....|
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--------~~l~~~~g~~~~~~~  250 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--------EQITNFEGLNGAPAW  250 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--------EEccCCCCCcCCeEE
Confidence            47777876444 45555566778999999999998776543   3688899976541        122222334556899


Q ss_pred             eeCCCcEEEEeeCCC--eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE-EEeeCCC--ceEEEeCCCCCc
Q 016458          167 VPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDS--TARLWDTRVASR  241 (389)
Q Consensus       167 ~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg--~i~i~d~~~~~~  241 (389)
                      +|+|..++++...+|  .|.+||+.++.....      ..+........|+| +++.+ ++...+|  .|+++|+..+ .
T Consensus       251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l------t~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g-~  322 (430)
T PRK00178        251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV------TNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGG-R  322 (430)
T ss_pred             CCCCCEEEEEEccCCCceEEEEECCCCCeEEc------ccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCC-C
Confidence            999865555665555  688889988765443      23444566778999 55544 4444444  4666777655 2


Q ss_pred             ceeEEeeeccceEEEEEecCCCEEEEEecC-C--eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC
Q 016458          242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN  318 (389)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (389)
                       ...+...........|+|+|++|+..+.+ +  .|.+||+.++.... +.... .     .....|+|+|++++..+.+
T Consensus       323 -~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~-~-----~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        323 -AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTS-L-----DESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             -EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCC-C-----CCCceECCCCCEEEEEEec
Confidence             22222222233457899999999877643 3  58889998875433 22211 1     1245899999988776544


Q ss_pred             -C--cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458          319 -G--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (389)
Q Consensus       319 -g--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (389)
                       |  .+.++++.. .....+    ..+.+.+...+|+|-
T Consensus       395 ~g~~~l~~~~~~g-~~~~~l----~~~~g~~~~p~ws~~  428 (430)
T PRK00178        395 QGRGVLMLVSING-RVRLPL----PTAQGEVREPSWSPY  428 (430)
T ss_pred             CCceEEEEEECCC-CceEEC----cCCCCCcCCCccCCC
Confidence             2  467777743 333344    334556677778763

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.64  E-value=6.1e-14  Score=108.19  Aligned_cols=205  Identities=16%  Similarity=0.195  Sum_probs=149.5

Q ss_pred             CcEEEEEEcC---CCC-eEEEEecCCcEEEEeCCCCCeeEEEeeCC------CcEEEEEECCCCcEEEEecCCCcEEEEe
Q 016458           68 GKVYSLDWTS---ERN-RIVSASQDGRLIVWNALTSQKTHAIKLPC------AWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (389)
Q Consensus        68 ~~v~~~~~~~---~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (389)
                      ..+..+.|..   +|. .++-+-.+|.|.++..........+.+-.      ....++.|++.+..++++..+|.+.+-+
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~  149 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY  149 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence            3466777764   444 56667778899999765544444333211      1256788999999999999999998555


Q ss_pred             CCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEEeeC
Q 016458          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISG  216 (389)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~  216 (389)
                      ....     .+...+..+.|.-+++...|+...++++++|+.|+.+..||++.. +.+..-    ...|...|.++.-+|
T Consensus       150 ~t~~-----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n----~kvH~~GV~SI~ss~  220 (339)
T KOG0280|consen  150 ETEM-----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN----SKVHTSGVVSIYSSP  220 (339)
T ss_pred             ccee-----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec----ceeeecceEEEecCC
Confidence            5432     223445788999999999999988899999999999999999933 333321    257889999999999


Q ss_pred             CCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC-CEEEEEecCCeEEEEECCCC
Q 016458          217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTG  282 (389)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~  282 (389)
                      +.+.++++|+.|-.|++||.|+..+++..-. -.+.|..+.++|.- ..++.++.-.-.++-+....
T Consensus       221 ~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~  286 (339)
T KOG0280|consen  221 PKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK  286 (339)
T ss_pred             CCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence            8999999999999999999997767765543 34789999999932 23333344344566665544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.63  E-value=2.6e-11  Score=100.85  Aligned_cols=266  Identities=10%  Similarity=0.063  Sum_probs=169.3

Q ss_pred             CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC----------CCcEEEEeCCCCCCCCCCCcceeeeccc-
Q 016458           89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL----------DSVCSIFNLNSPTDKDGNLPVSRMLSGH-  157 (389)
Q Consensus        89 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~~~~~~-  157 (389)
                      ++|.+.|..+++.+..+.....+-. + ++|+++.|+++..          +..|.+||..+.+       ....+... 
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~-------~~~~i~~p~   97 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL-------PIADIELPE   97 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc-------EEeEEccCC
Confidence            8999999999999988886654443 4 9999999887755          7899999999855       33333211 


Q ss_pred             ------ccceEEEEEeeCCCcEEEEee-C-CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC
Q 016458          158 ------KGYVSCCQYVPDEDTHLITSS-G-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS  229 (389)
Q Consensus       158 ------~~~v~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  229 (389)
                            ......++++|+|. +++... . +..|.+.|+.+++.+..+..      .+...-...+. ...+  +-+.||
T Consensus        98 ~p~~~~~~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~v------p~~~~vy~t~e-~~~~--~~~~Dg  167 (352)
T TIGR02658        98 GPRFLVGTYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDV------PDCYHIFPTAN-DTFF--MHCRDG  167 (352)
T ss_pred             CchhhccCccceEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeC------CCCcEEEEecC-CccE--EEeecC
Confidence                  12334678999984 555443 4 89999999999999988732      22222222221 2222  233456


Q ss_pred             ceEEEeCCCCCcce-eE---Eeeeccce-EEEEEec-CCCEEEEEecCCeEEEEECCCCc-----eeeEeeccCC--CCC
Q 016458          230 TARLWDTRVASRAV-RT---FHGHEGDV-NTVKFFP-DGNRFGTGSDDGTCRLFDIRTGH-----QLQVYYQQHG--ENE  296 (389)
Q Consensus       230 ~i~i~d~~~~~~~~-~~---~~~~~~~i-~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~--~~~  296 (389)
                      ......+....+.. ..   +.....++ ..-.|.+ +|+++.+... |.|.+.|+....     ....+.....  .-.
T Consensus       168 ~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr  246 (352)
T TIGR02658       168 SLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR  246 (352)
T ss_pred             ceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccC
Confidence            55554444332211 11   11100000 0014456 8887777766 999999964432     2222211100  001


Q ss_pred             CCCeeEEEeCCCCCEEEEEec----------CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC-eEEeee-CC
Q 016458          297 IPHVTSIAFSISGRLLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGS-WD  364 (389)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~d  364 (389)
                      ...+.-++++++++.+++...          .+.|.++|..+++.+..+.     -...+..++++||++ +|++.. .+
T Consensus       247 P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-----vG~~~~~iavS~Dgkp~lyvtn~~s  321 (352)
T TIGR02658       247 PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-----LGHEIDSINVSQDAKPLLYALSTGD  321 (352)
T ss_pred             CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-----CCCceeeEEECCCCCeEEEEeCCCC
Confidence            122445999999998888431          2479999999999999884     234789999999999 877666 57


Q ss_pred             CeeEEeecceecccCcccC
Q 016458          365 TNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       365 g~i~i~~~~W~~~~~~~~~  383 (389)
                      +.|.+    .|..+++...
T Consensus       322 ~~VsV----iD~~t~k~i~  336 (352)
T TIGR02658       322 KTLYI----FDAETGKELS  336 (352)
T ss_pred             CcEEE----EECcCCeEEe
Confidence            88999    9999987653

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.63  E-value=3.3e-13  Score=121.07  Aligned_cols=194  Identities=18%  Similarity=0.241  Sum_probs=156.5

Q ss_pred             EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCC----cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458           70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA----WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (389)
Q Consensus        70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (389)
                      |....+..+...++.++.++.+.+||...+.....+.....    ...-+-++++.-++++|+.-+.|.+|+.....   
T Consensus        90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn---  166 (967)
T KOG0974|consen   90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN---  166 (967)
T ss_pred             ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC---
Confidence            44444555667889999999999999988777666554432    22334457788899999999999999998322   


Q ss_pred             CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG  225 (389)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  225 (389)
                          ....+.+|.+.|..+.|+.+| .++++.+.|.++++|++++.+.....    .-+|...+..+++.| +  .++++
T Consensus       167 ----~p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~~~----~fgHsaRvw~~~~~~-n--~i~t~  234 (967)
T KOG0974|consen  167 ----KPIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLGCT----GFGHSARVWACCFLP-N--RIITV  234 (967)
T ss_pred             ----CcceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccCcc----cccccceeEEEEecc-c--eeEEe
Confidence                122688999999999999998 79999999999999999998776621    168999999999998 4  89999


Q ss_pred             eCCCceEEEeCCCCCcceeEEeeecc-ceEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458          226 SCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDIR  280 (389)
Q Consensus       226 ~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  280 (389)
                      +.|-+.++|+...  ..+..+..|.. .+..++..++...+++++.||.+++||+.
T Consensus       235 gedctcrvW~~~~--~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  235 GEDCTCRVWGVNG--TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             ccceEEEEEeccc--ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence            9999999997663  45557777765 68999999999999999999999999874

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.61  E-value=3.7e-12  Score=105.85  Aligned_cols=303  Identities=15%  Similarity=0.130  Sum_probs=197.6

Q ss_pred             cccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC
Q 016458           50 VSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL  129 (389)
Q Consensus        50 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  129 (389)
                      ..|.+........+..-.-++..++|||.|.+|++....| |.+|.-.....+..+..  ..|..+.|+|++++|.+-..
T Consensus        15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~--~~V~~~~fSP~~kYL~tw~~   91 (561)
T COG5354          15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRH--PDVKYLDFSPNEKYLVTWSR   91 (561)
T ss_pred             EeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeeec--CCceecccCcccceeeeecc
Confidence            3444444444444444566899999999999999887765 99999887775555543  35899999999999998654


Q ss_pred             CC---------------cEEEEeCCCCCCC-------CC--CCcce--------------eeeccc--------------
Q 016458          130 DS---------------VCSIFNLNSPTDK-------DG--NLPVS--------------RMLSGH--------------  157 (389)
Q Consensus       130 dg---------------~i~vw~~~~~~~~-------~~--~~~~~--------------~~~~~~--------------  157 (389)
                      .+               .+.+||..++...       ..  .++..              ..+.-|              
T Consensus        92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~l  171 (561)
T COG5354          92 EPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNL  171 (561)
T ss_pred             CCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhc
Confidence            43               4899999875410       00  01000              011111              


Q ss_pred             -ccceEEEEEeeCCC-cEEEE-----eeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee----
Q 016458          158 -KGYVSCCQYVPDED-THLIT-----SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS----  226 (389)
Q Consensus       158 -~~~v~~~~~~~~~~-~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----  226 (389)
                       ...|....|+|.++ ..|+.     .+.++.+++|.+..+..+..-     .-....-..+.|++ .++++++-.    
T Consensus       172 r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk-----~lfk~~~~qLkW~~-~g~~ll~l~~t~~  245 (561)
T COG5354         172 RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK-----NLFKVSGVQLKWQV-LGKYLLVLVMTHT  245 (561)
T ss_pred             cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee-----eeEeecccEEEEec-CCceEEEEEEEee
Confidence             13456677777632 22232     456788999998876665544     22333345677887 455444311    


Q ss_pred             -------CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe--cCCeEEEEECCCCceeeEeeccCCCCCC
Q 016458          227 -------CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRTGHQLQVYYQQHGENEI  297 (389)
Q Consensus       227 -------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~  297 (389)
                             ....++|++++..  .+.....-.++|...+|.|.++.+++.+  .+-.+.++|++.. ....+.. ..    
T Consensus       246 ksnKsyfgesnLyl~~~~e~--~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe-~~----  317 (561)
T COG5354         246 KSNKSYFGESNLYLLRITER--SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPE-QK----  317 (561)
T ss_pred             ecccceeccceEEEEeeccc--ccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCC-cc----
Confidence                   1356888888843  3333335678999999999888776554  7888999999865 3333322 21    


Q ss_pred             CCeeEEEeCCCCCEEEEEec---CCcEEEEEcccceEEE-eecCcCCCCCCCeeEEEECCCCCeEEeee------CCCee
Q 016458          298 PHVTSIAFSISGRLLFAGYS---NGDCYVWDTLLAKVVL-NLGSLQNSHEGRITCLGLSADGSALCTGS------WDTNL  367 (389)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i  367 (389)
                        -+.+.|+|.+++++.++-   .|.+.+||........ .+    .+.  ..+-+.|+||++++.+..      .|..+
T Consensus       318 --rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~----~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i  389 (561)
T COG5354         318 --RNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF----NGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSI  389 (561)
T ss_pred             --cccccccCcccEEEEecCCccccceEEeccCCceEEEEEe----ecC--CceEeeccCCceEEEecCCCcccccCcce
Confidence              367889999999888655   4689999987665554 44    222  334567999999988765      46778


Q ss_pred             EEeecceecccCcc
Q 016458          368 KVNLGFWRVQEGAL  381 (389)
Q Consensus       368 ~i~~~~W~~~~~~~  381 (389)
                      .|    |++...+.
T Consensus       390 ~l----~~v~g~~~  399 (561)
T COG5354         390 KL----WDVYGAKV  399 (561)
T ss_pred             EE----EEecCchh
Confidence            88    99876544

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.61  E-value=5.1e-13  Score=112.79  Aligned_cols=191  Identities=15%  Similarity=0.216  Sum_probs=151.0

Q ss_pred             cCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeC---CCcEEEEEE------CC--------------CCcEEEEecCCCc
Q 016458           76 TSERNRIVSASQDGRLIVWNALTSQKTHAIKLP---CAWVMTCAF------SP--------------TGQSVACGGLDSV  132 (389)
Q Consensus        76 ~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~---~~~v~~~~~------~~--------------~~~~l~~~~~dg~  132 (389)
                      .|...++|....||.+++|+...++....+...   .+..++..|      +|              +...++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            345679999999999999999988877666432   123334443      22              2356788899999


Q ss_pred             EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (389)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  212 (389)
                      |.+|++..++     +.....-..|.+.|.++.++.+- ..|.+++.|+.+..|+.........+     ......+.++
T Consensus        82 v~~ys~~~g~-----it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~-----~~~~~~~~sl  150 (541)
T KOG4547|consen   82 VLLYSVAGGE-----ITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIW-----KEQKPLVSSL  150 (541)
T ss_pred             EEEEEecCCe-----EEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeee-----ccCCCccceE
Confidence            9999998755     22333345799999999998876 68999999999999999999999988     6778889999


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecC-----CCEEEEEe-cCCeEEEEECCC
Q 016458          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-----GNRFGTGS-DDGTCRLFDIRT  281 (389)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~-~dg~i~i~d~~~  281 (389)
                      +++| ++..+++++  +.|.+||+++. +.+..+.+|.++|+++.|--+     |.+++++. .+..+.+|-+..
T Consensus       151 ~is~-D~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  151 CISP-DGKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEcC-CCCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9999 688888877  78999999998 899999999999999999876     66666543 455577776654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=3.1e-12  Score=111.69  Aligned_cols=240  Identities=13%  Similarity=0.108  Sum_probs=144.3

Q ss_pred             cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE---EEecCCC--cEEEEeCCCCCCCCCCCcceeeecccccceEEE
Q 016458           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV---ACGGLDS--VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCC  164 (389)
Q Consensus        90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~  164 (389)
                      .|.+.|...+.. ..+.........-+|+|||+.+   ++...+|  .|.+.++.++..        ..+....+.....
T Consensus       166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--------~~lt~~~g~~~~p  236 (428)
T PRK01029        166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--------KKILALQGNQLMP  236 (428)
T ss_pred             eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--------eEeecCCCCccce
Confidence            566777654443 3444455567778999999752   2444443  577778776431        1222233444567


Q ss_pred             EEeeCCCcEEEEeeCCC----eEEEEeCCCC---eeEEEecCcccCCCCCCeeEEEeeCCCCcEEE-EeeCCCceEEE--
Q 016458          165 QYVPDEDTHLITSSGDQ----TCVLWDITTG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDSTARLW--  234 (389)
Q Consensus       165 ~~~~~~~~~l~~~~~dg----~i~iwd~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~--  234 (389)
                      .|+|||..++++...+|    .+..|++..+   ......     ..........+|+| +++.|+ +...+|...+|  
T Consensus       237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-----~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~  310 (428)
T PRK01029        237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-----NEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIM  310 (428)
T ss_pred             EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee-----cCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEE
Confidence            99999965555543333    3445776653   222222     12223346789999 666555 44456655555  


Q ss_pred             eCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC---CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCE
Q 016458          235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL  311 (389)
Q Consensus       235 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  311 (389)
                      ++.........+..+...+....|+|||+.|+..+.+   ..|.+||+.+++..... ....     .+....|+|||++
T Consensus       311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~-----~~~~p~wSpDG~~  384 (428)
T PRK01029        311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPE-----NKESPSWAIDSLH  384 (428)
T ss_pred             ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCC-----CccceEECCCCCE
Confidence            4432223344455455567789999999998876543   46999999887654332 2111     2567899999998


Q ss_pred             EEEEec---CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458          312 LFAGYS---NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (389)
Q Consensus       312 l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (389)
                      |+....   ...|+++|+..++.....     ...+.+...+|+|-.
T Consensus       385 L~f~~~~~g~~~L~~vdl~~g~~~~Lt-----~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        385 LVYSAGNSNESELYLISLITKKTRKIV-----IGSGEKRFPSWGAFP  426 (428)
T ss_pred             EEEEECCCCCceEEEEECCCCCEEEee-----cCCCcccCceecCCC
Confidence            875433   346888998877654433     234456677888753

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.60  E-value=2.1e-11  Score=101.39  Aligned_cols=263  Identities=14%  Similarity=0.119  Sum_probs=166.8

Q ss_pred             CcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEec----------CCcEEEEeCCCCCeeEEEeeCCC-------c
Q 016458           49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ----------DGRLIVWNALTSQKTHAIKLPCA-------W  111 (389)
Q Consensus        49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~----------dg~v~iw~~~~~~~~~~~~~~~~-------~  111 (389)
                      ....+....+...++..-..+-- + ++||++.|+++..          +..|.+||..+.+.+..+.....       .
T Consensus        29 v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~  106 (352)
T TIGR02658        29 VYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTY  106 (352)
T ss_pred             EEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCc
Confidence            44556666777777665444433 4 9999998877665          78999999999999998886433       2


Q ss_pred             EEEEEECCCCcEEEEec-C-CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          112 VMTCAFSPTGQSVACGG-L-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       112 v~~~~~~~~~~~l~~~~-~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                      ...++++|+|++|++.. . +..|.+.|+.+++       ....+.- .+...-...++   .-+.+-+.||......+.
T Consensus       107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k-------vv~ei~v-p~~~~vy~t~e---~~~~~~~~Dg~~~~v~~d  175 (352)
T TIGR02658       107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA-------FVRMMDV-PDCYHIFPTAN---DTFFMHCRDGSLAKVGYG  175 (352)
T ss_pred             cceEEECCCCCEEEEecCCCCCEEEEEECCCCc-------EEEEEeC-CCCcEEEEecC---CccEEEeecCceEEEEec
Confidence            34789999999999776 3 6899999999865       3333322 11111111111   112233344444443332


Q ss_pred             CCeeEEEecCcccCC-----CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC----cceeEEee-------eccce
Q 016458          190 TGLRTSVFGGEFQSG-----HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS----RAVRTFHG-------HEGDV  253 (389)
Q Consensus       190 ~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~-------~~~~i  253 (389)
                      .......-.......     ...+    .+.+.++.++.+... |.|.+.|+....    .....+..       ..+.+
T Consensus       176 ~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~  250 (352)
T TIGR02658       176 TKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW  250 (352)
T ss_pred             CCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence            221111110000001     1112    345546666666665 999999965431    22222111       22334


Q ss_pred             EEEEEecCCCEEEEEe----------cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEe-cCCcE
Q 016458          254 NTVKFFPDGNRFGTGS----------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDC  321 (389)
Q Consensus       254 ~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i  321 (389)
                      .-++++|+++.+++..          ..+.|.++|..+++.+..+.....      +..++++||++ +|++.+ .++.|
T Consensus       251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~------~~~iavS~Dgkp~lyvtn~~s~~V  324 (352)
T TIGR02658       251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHE------IDSINVSQDAKPLLYALSTGDKTL  324 (352)
T ss_pred             eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCc------eeeEEECCCCCeEEEEeCCCCCcE
Confidence            4599999999988843          225799999999999988876443      78999999999 888776 57889


Q ss_pred             EEEEcccceEEEee
Q 016458          322 YVWDTLLAKVVLNL  335 (389)
Q Consensus       322 ~i~d~~~~~~~~~~  335 (389)
                      .++|..+++.+..+
T Consensus       325 sViD~~t~k~i~~i  338 (352)
T TIGR02658       325 YIFDAETGKELSSV  338 (352)
T ss_pred             EEEECcCCeEEeee
Confidence            99999999999887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.60  E-value=5.1e-11  Score=95.38  Aligned_cols=278  Identities=15%  Similarity=0.181  Sum_probs=181.9

Q ss_pred             cccccCcEEEEEEcCCCCeEEEEec---CCcEEEEeCCC--CCeeE--EEeeCCCcEEEEEECCCCcEEEEecC-CCcEE
Q 016458           63 LQGHAGKVYSLDWTSERNRIVSASQ---DGRLIVWNALT--SQKTH--AIKLPCAWVMTCAFSPTGQSVACGGL-DSVCS  134 (389)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~~~~~---dg~v~iw~~~~--~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~  134 (389)
                      +..+.+.++-|+|+|+++.|.++..   +|.|..|.++.  |+...  .......+...+++++++++++++.. .|.|.
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            4456778899999999999888765   47788887764  44332  22333445588999999999998866 58899


Q ss_pred             EEeCCCCCCCCCCCcceeeecccccc----------eEEEEEeeCCCcEEEEee-CCCeEEEEeCCCCeeEEEecCcccC
Q 016458          135 IFNLNSPTDKDGNLPVSRMLSGHKGY----------VSCCQYVPDEDTHLITSS-GDQTCVLWDITTGLRTSVFGGEFQS  203 (389)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~  203 (389)
                      ++.+....    .+........|.+.          +....+.|++ +++++.. .--.|.+|++..+.....-...  .
T Consensus       115 v~p~~~dG----~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~--v  187 (346)
T COG2706         115 VYPLQADG----SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAE--V  187 (346)
T ss_pred             EEEcccCC----ccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccc--c
Confidence            99987632    11122222334433          7788999998 4555544 3567999999977655443322  2


Q ss_pred             CCCCCeeEEEeeCCCCcEEEEe-eCCCceEEEeCCCCCcceeEEeee---------ccceEEEEEecCCCEEEEEec-CC
Q 016458          204 GHTADVLSVSISGSNSRMFVSG-SCDSTARLWDTRVASRAVRTFHGH---------EGDVNTVKFFPDGNRFGTGSD-DG  272 (389)
Q Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~l~~~~~-dg  272 (389)
                      ......+.+.|+| ++++..+. --+++|.+|........+..++.+         ......|..+|||++|+++.. ..
T Consensus       188 ~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d  266 (346)
T COG2706         188 KPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD  266 (346)
T ss_pred             CCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC
Confidence            4456688999999 77766554 458999999988753344443322         234667899999999988753 34


Q ss_pred             eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC-cEEEEEcc--cceEEEeecCcCCCCCCCeeEE
Q 016458          273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTL--LAKVVLNLGSLQNSHEGRITCL  349 (389)
Q Consensus       273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~--~~~~~~~~~~~~~~~~~~v~~~  349 (389)
                      .|.+|.+........+.... ..+....+.+.|+++|++|+++..++ .|.+|...  +|+.-....   ........|+
T Consensus       267 sI~~f~V~~~~g~L~~~~~~-~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~---~~~~p~Pvcv  342 (346)
T COG2706         267 SIAVFSVDPDGGKLELVGIT-PTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR---YAVVPEPVCV  342 (346)
T ss_pred             eEEEEEEcCCCCEEEEEEEe-ccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc---ccCCCCcEEE
Confidence            78888876543322222211 11122357899999999999988754 67888664  455444332   2344455677


Q ss_pred             EEC
Q 016458          350 GLS  352 (389)
Q Consensus       350 ~~~  352 (389)
                      .|.
T Consensus       343 ~f~  345 (346)
T COG2706         343 KFL  345 (346)
T ss_pred             EEc
Confidence            664

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.59  E-value=1.5e-13  Score=123.16  Aligned_cols=275  Identities=15%  Similarity=0.205  Sum_probs=184.0

Q ss_pred             ccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC-CcEEEE--EECCCCcEEEEecCCCcEEEEeCCCCC
Q 016458           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTC--AFSPTGQSVACGGLDSVCSIFNLNSPT  142 (389)
Q Consensus        66 h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~--~~~~~~~~l~~~~~dg~i~vw~~~~~~  142 (389)
                      |-+++++.++-.  ++|++|.. -.|.+||+..+..+..+.... -.+...  ...-.+.+++++..-+.+..=+...  
T Consensus         6 ~~~~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~--   80 (967)
T KOG0974|consen    6 SLGPLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASN--   80 (967)
T ss_pred             ccccccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhh--
Confidence            334555555544  47776654 369999998887654443211 111100  0001233444444333333322211  


Q ss_pred             CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCe-----eEEEeeCC
Q 016458          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV-----LSVSISGS  217 (389)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~  217 (389)
                               .....-...+....+.-.+ ..++.++.+..+.+||...+.......      +....     .-+-.++ 
T Consensus        81 ---------~~~~~~s~wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~------~~er~~l~~~~~~g~s~-  143 (967)
T KOG0974|consen   81 ---------QIIERFSDWIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQ------SDERCTLYSSLIIGDSA-  143 (967)
T ss_pred             ---------hhhhhccccccccchhhhc-ceEEEEEcCceEEEEecccCceehhcC------CCceEEEEeEEEEeccC-
Confidence                     1111122333333444443 678889999999999998877666552      22221     1122333 


Q ss_pred             CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCC
Q 016458          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI  297 (389)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  297 (389)
                      +.-++++|+.-+.|.+|+......+. .+.+|.+.|.++.++.||.++++.+.|.++++|++.+.+...    ...-.|.
T Consensus       144 ~~~~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~----~~~fgHs  218 (967)
T KOG0974|consen  144 EELYIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG----CTGFGHS  218 (967)
T ss_pred             cEEEEEeccccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC----ccccccc
Confidence            66788999999999999998543333 688999999999999999999999999999999999987666    2233455


Q ss_pred             CCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCC-CCeeEEEECCCCCeEEeeeCCCeeEEeecceec
Q 016458          298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE-GRITCLGLSADGSALCTGSWDTNLKVNLGFWRV  376 (389)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~  376 (389)
                      ..+..++|.|+  .+++++.|.+.++|+.. +..+..+    ..|. ..|..++..++...++|++.||.+++    |++
T Consensus       219 aRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y----~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~----~~l  287 (967)
T KOG0974|consen  219 ARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVY----DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKL----WDL  287 (967)
T ss_pred             ceeEEEEeccc--eeEEeccceEEEEEecc-cceehhh----hhhhhcceeEEEEcCCceEEEeeccCcchhh----hhh
Confidence            57999999988  99999999999999754 4444455    4444 57999999999999999999999999    887


Q ss_pred             cc
Q 016458          377 QE  378 (389)
Q Consensus       377 ~~  378 (389)
                      ..
T Consensus       288 ~~  289 (967)
T KOG0974|consen  288 NG  289 (967)
T ss_pred             hc
Confidence            64

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=5.2e-13  Score=115.42  Aligned_cols=277  Identities=13%  Similarity=0.133  Sum_probs=196.0

Q ss_pred             CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC---------------eeEEEeeCCCcEEEEEECCCCcEEEEecCCCc
Q 016458           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---------------KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV  132 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (389)
                      ....|++|+....++|+|+.||.+++-.+.+..               .-+++.+|.+.|.-+.|+.+.+.|-+...+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            458899999999999999999999999775431               23456789999999999999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (389)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  212 (389)
                      |.||-+-.+.     +...-.-...++.|.+++|+.+| ..++....||.|.+=.++.......      .-.......+
T Consensus        95 IiVWmlykgs-----W~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgK------eLkg~~l~hv  162 (1189)
T KOG2041|consen   95 IIVWMLYKGS-----WCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGK------ELKGQLLAHV  162 (1189)
T ss_pred             EEEEeeeccc-----HHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecch------hcchheccce
Confidence            9999987643     11122223346778999999998 6788889999988876655432221      1112234578


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEeCCCCC------cceeEE----eeeccceEEEEEe--------cCCCEEEEEecCCeE
Q 016458          213 SISGSNSRMFVSGSCDSTARLWDTRVAS------RAVRTF----HGHEGDVNTVKFF--------PDGNRFGTGSDDGTC  274 (389)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~----~~~~~~i~~~~~~--------~~~~~l~~~~~dg~i  274 (389)
                      .|++ +...++.+-..|.+.+||.....      .+....    ......|..+.|.        |+...|+++..+|.+
T Consensus       163 ~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~  241 (1189)
T KOG2041|consen  163 LWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRM  241 (1189)
T ss_pred             eecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCcee
Confidence            8998 77777788888999999975331      111111    1111224555553        477889999999999


Q ss_pred             EEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC---------cEEEEEcccceEEEeecCcCCCCCCC
Q 016458          275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---------DCYVWDTLLAKVVLNLGSLQNSHEGR  345 (389)
Q Consensus       275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~~  345 (389)
                      .+..-.+......+....      .+....|+++|..|++++.+.         .|++|. .-|+.+.++    +.....
T Consensus       242 QiMR~eND~~Pvv~dtgm------~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtl----kvpg~~  310 (1189)
T KOG2041|consen  242 QIMRSENDPEPVVVDTGM------KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTL----KVPGSC  310 (1189)
T ss_pred             hhhhhcCCCCCeEEeccc------EeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEE----ecCCce
Confidence            988766555555444432      388999999999999987642         466665 357777777    567788


Q ss_pred             eeEEEECCCCCeEEeeeCCCeeEE
Q 016458          346 ITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       346 v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      |++++|-..|-.++.+ .|+.|.+
T Consensus       311 It~lsWEg~gLriA~A-vdsfiyf  333 (1189)
T KOG2041|consen  311 ITGLSWEGTGLRIAIA-VDSFIYF  333 (1189)
T ss_pred             eeeeEEcCCceEEEEE-ecceEEE
Confidence            9999998777655544 3555544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.58  E-value=2e-14  Score=135.33  Aligned_cols=203  Identities=17%  Similarity=0.249  Sum_probs=164.8

Q ss_pred             cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEee-CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCC
Q 016458           63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP  141 (389)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  141 (389)
                      ++.|-..|.++.-+|...+.+||+.||.|++|....++.+..++. ....|+.+.|+.+|+.+..+..||.+.+|.... 
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-
Confidence            445566799999999999999999999999999999988877763 337899999999999999999999999999873 


Q ss_pred             CCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee---CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS---GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN  218 (389)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  218 (389)
                             ......+.|+....+..|...   .+++++   .++.+.+||..-......+.    ..|...++++++.| .
T Consensus      2283 -------k~~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~----~~H~~gaT~l~~~P-~ 2347 (2439)
T KOG1064|consen 2283 -------KPYTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVH----TCHDGGATVLAYAP-K 2347 (2439)
T ss_pred             -------cceeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceee----eecCCCceEEEEcC-c
Confidence                   145667788888999999873   466554   47899999976543333332    57999999999999 8


Q ss_pred             CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC
Q 016458          219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH  292 (389)
Q Consensus       219 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  292 (389)
                      ..+|++|+.+|.|++||++.. +..+.+..         ++ ...++++|+..|.++||++.....+..+...+
T Consensus      2348 ~qllisggr~G~v~l~D~rqr-ql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2348 HQLLISGGRKGEVCLFDIRQR-QLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             ceEEEecCCcCcEEEeehHHH-HHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence            899999999999999999976 55544443         44 56789999999999999999887777776554

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.58  E-value=1.7e-12  Score=114.72  Aligned_cols=206  Identities=17%  Similarity=0.142  Sum_probs=134.8

Q ss_pred             cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC---CeEEEEeCCCCeeEEEecCcccCCCCCC
Q 016458          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---QTCVLWDITTGLRTSVFGGEFQSGHTAD  208 (389)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~  208 (389)
                      .|.++|.....        ...+..+...+....|+|++. .++.+..+   ..|++||+.++......      .+...
T Consensus       171 ~l~~~d~~g~~--------~~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~~~------~~~~~  235 (417)
T TIGR02800       171 ELQVADYDGAN--------PQTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREKVA------SFPGM  235 (417)
T ss_pred             eEEEEcCCCCC--------CEEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEee------cCCCC
Confidence            57777765422        233445566788899999985 55554432   57999999988654432      34455


Q ss_pred             eeEEEeeCCCCcEEEEeeCCC--ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC-C--eEEEEECCCCc
Q 016458          209 VLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G--TCRLFDIRTGH  283 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~  283 (389)
                      +.+++|+|++..++++.+.++  .|++||+.+.  ....+..+........|+|+++.|+..+.. +  .|+++|+.+++
T Consensus       236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK--QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             ccceEECCCCCEEEEEECCCCCccEEEEECCCC--CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            667899994334445555544  5888888754  233444454455677999999988776543 3  58888887665


Q ss_pred             eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC---cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEe
Q 016458          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT  360 (389)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  360 (389)
                      ... +....     .......|+|+|++++.++.++   .|.+||+.++... .+.    . ........|+|||++|+.
T Consensus       314 ~~~-l~~~~-----~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~----~-~~~~~~p~~spdg~~l~~  381 (417)
T TIGR02800       314 VRR-LTFRG-----GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLT----D-TGLDESPSFAPNGRMILY  381 (417)
T ss_pred             EEE-eecCC-----CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-Ecc----C-CCCCCCceECCCCCEEEE
Confidence            432 22211     1356789999999999887775   7899998875443 221    1 122345689999999988


Q ss_pred             eeCCCe
Q 016458          361 GSWDTN  366 (389)
Q Consensus       361 ~~~dg~  366 (389)
                      ++.++.
T Consensus       382 ~~~~~~  387 (417)
T TIGR02800       382 ATTRGG  387 (417)
T ss_pred             EEeCCC
Confidence            877653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.58  E-value=1.6e-14  Score=121.04  Aligned_cols=293  Identities=14%  Similarity=0.165  Sum_probs=199.9

Q ss_pred             eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC-------CCeeEEEeeCCCcEEEEEECCCCcEEEEecCCC
Q 016458           59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-------SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS  131 (389)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  131 (389)
                      ....+.||+..|.+++--.+.+-+++++.|++|++|.++.       ..+..+++.|..+|..+.|-.+.++++++  ||
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            3457889999999998877888999999999999998753       23567778899999999999998888765  78


Q ss_pred             cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEe-eCCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (389)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  210 (389)
                      .|++||.-.+......  ......+..+.|.|+.-.  ...++++| +...+|+++|.+.......+......+....+.
T Consensus       805 giHlWDPFigr~Laq~--~dapk~~a~~~ikcl~nv--~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R  880 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQM--EDAPKEGAGGNIKCLENV--DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR  880 (1034)
T ss_pred             cceeecccccchhHhh--hcCcccCCCceeEecccC--cchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence            8999997654310000  000111222334443221  12344444 678999999999988877776554456667789


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEE-EECCCCceeeEee
Q 016458          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL-FDIRTGHQLQVYY  289 (389)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~  289 (389)
                      ++++.+ .++.++++-.+|.|.+.|.+++ ..+..+++.+-....++- |..+.|+....|.++.+ |-..++.......
T Consensus       881 ~iaVa~-~GN~lAa~LSnGci~~LDaR~G-~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~k  957 (1034)
T KOG4190|consen  881 AIAVAD-KGNKLAAALSNGCIAILDARNG-KVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDK  957 (1034)
T ss_pred             EEEecc-CcchhhHHhcCCcEEEEecCCC-ceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence            999998 8889999999999999999988 777777766555555543 55667888888889888 8876665444433


Q ss_pred             ccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc----ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458          290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL----AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (389)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  365 (389)
                      .+..+.+.  .     -.-|..+++....+.+.+|--..    ...+..+..  ....+..++++.-|-..-+..|...|
T Consensus       958 pppepahf--l-----qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~--d~f~G~lTala~LPLN~afLaGne~G 1028 (1034)
T KOG4190|consen  958 PPPEPAHF--L-----QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRP--DEFPGTLTALAPLPLNCAFLAGNEHG 1028 (1034)
T ss_pred             CCCcchhh--h-----hccCceeEEeccCcEEEEEecchhhhhhhhhccccc--cccCCccceeeeccccchhhccCCCC
Confidence            32222111  1     12355677766666777774211    111111211  34456788899888777778888889


Q ss_pred             eeEE
Q 016458          366 NLKV  369 (389)
Q Consensus       366 ~i~i  369 (389)
                      .|.+
T Consensus      1029 ~IaL 1032 (1034)
T KOG4190|consen 1029 AIAL 1032 (1034)
T ss_pred             ceee
Confidence            8876

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.57  E-value=4.6e-14  Score=122.02  Aligned_cols=291  Identities=18%  Similarity=0.188  Sum_probs=203.6

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC--CcEEEEEECCCC--cEEEEecCCCcEEEEeCCCCC
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTG--QSVACGGLDSVCSIFNLNSPT  142 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~  142 (389)
                      .+.+.++..+|.|+-+|.++.-| +.+-|+...-.....-.|.  -.|-.+.|+|..  .+-++......-.+|++....
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            45788999999999999999877 5566765543222222222  346677887743  445555556667799987643


Q ss_pred             CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE-EEecCcccCCCCCCeeEEEeeCCCCcE
Q 016458          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT-SVFGGEFQSGHTADVLSVSISGSNSRM  221 (389)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~  221 (389)
                          ...+...+.+|...|+.+.|.|+.+..+++++.|..+..||+++.... ..+     ..-......++|+-.+++.
T Consensus       103 ----~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-----~~w~s~asqVkwnyk~p~v  173 (1081)
T KOG0309|consen  103 ----SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-----SSWRSAASQVKWNYKDPNV  173 (1081)
T ss_pred             ----ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-----ecccccCceeeecccCcch
Confidence                223566778999999999999999999999999999999999986433 222     3445567788998866666


Q ss_pred             EEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe
Q 016458          222 FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV  300 (389)
Q Consensus       222 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i  300 (389)
                      ++ .+....|++||.+.+..++..+++|...|+.++|.. ....+.+++.||+|+.||.............    ...+|
T Consensus       174 la-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt----t~~pi  248 (1081)
T KOG0309|consen  174 LA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT----TNFPI  248 (1081)
T ss_pred             hh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc----ccCcc
Confidence            55 456778999999999899999999999999999976 3446889999999999998764433222221    12245


Q ss_pred             eEEEeCCCCCEEEE--EecCCcEEEEE---------cc-cceEEEeecCcCCCCCCCeeEEEECCCC----------CeE
Q 016458          301 TSIAFSISGRLLFA--GYSNGDCYVWD---------TL-LAKVVLNLGSLQNSHEGRITCLGLSADG----------SAL  358 (389)
Q Consensus       301 ~~~~~~~~~~~l~~--~~~dg~i~i~d---------~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l  358 (389)
                      ..-.+-|-|.-.++  --.+..+.+++         .. ...++..+    .+|...|..+.|-..+          -.|
T Consensus       249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F----~GH~D~V~eFlWR~r~e~~~d~d~rdfQL  324 (1081)
T KOG0309|consen  249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF----VGHDDVVLEFLWRKRKECDGDYDSRDFQL  324 (1081)
T ss_pred             eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee----cCcchHHHHHhhhhcccccCCCCccceeE
Confidence            66666665442222  11122333333         22 23566777    7999988877775422          279


Q ss_pred             EeeeCCCeeEEeecceecccCc
Q 016458          359 CTGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       359 ~~~~~dg~i~i~~~~W~~~~~~  380 (389)
                      +|-+.|..+++    |.+.+.-
T Consensus       325 VTWSkD~~lrl----WpI~~~i  342 (1081)
T KOG0309|consen  325 VTWSKDQTLRL----WPIDSQI  342 (1081)
T ss_pred             EEeecCCceEe----eeccHHH
Confidence            99999999999    9987643

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.57  E-value=7.5e-13  Score=111.82  Aligned_cols=190  Identities=16%  Similarity=0.219  Sum_probs=151.8

Q ss_pred             CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee------C-------------CCCcEEEEeeCCCce
Q 016458          171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS------G-------------SNSRMFVSGSCDSTA  231 (389)
Q Consensus       171 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~-------------~~~~~l~~~~~dg~i  231 (389)
                      ..+++....||.+++||...++....+.+..  ...+..++..|.      |             .+...++-|...|.|
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~--~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIA--SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccch--hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4689999999999999999998887774431  223344444442      1             144578889999999


Q ss_pred             EEEeCCCCCcceeEEe--eeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC
Q 016458          232 RLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  309 (389)
Q Consensus       232 ~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  309 (389)
                      .+|+...+ +....+.  .|.+.|+++.++.+-..|.+++.|+.+..|+......+..+......     +.+++++|||
T Consensus        83 ~~ys~~~g-~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~-----~~sl~is~D~  156 (541)
T KOG4547|consen   83 LLYSVAGG-EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL-----VSSLCISPDG  156 (541)
T ss_pred             EEEEecCC-eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc-----cceEEEcCCC
Confidence            99999877 5554444  68999999999998889999999999999999998888887665544     8999999999


Q ss_pred             CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC-----CCeEEe-eeCCCeeEEeecceeccc
Q 016458          310 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-----GSALCT-GSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~-~~~dg~i~i~~~~W~~~~  378 (389)
                      ..+++++  +.|.+||+++++.+..+    .+|.++|.+++|..+     |.++.+ +..+..+.+    |-+..
T Consensus       157 ~~l~~as--~~ik~~~~~~kevv~~f----tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~----w~v~~  221 (541)
T KOG4547|consen  157 KILLTAS--RQIKVLDIETKEVVITF----TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITV----WVVEK  221 (541)
T ss_pred             CEEEecc--ceEEEEEccCceEEEEe----cCCCcceEEEEEEEeccccccceeeeccccccceeE----EEEEc
Confidence            9999886  57999999999999999    899999999999876     566555 444556666    87765

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.57  E-value=4.4e-11  Score=95.75  Aligned_cols=285  Identities=12%  Similarity=0.120  Sum_probs=178.0

Q ss_pred             CCcEEEEeCCCCCe-e--EEEeeCCCcEEEEEECCCCcEEEEecC---CCcEEEEeCCCCCCCCCCCcceeeecccccce
Q 016458           88 DGRLIVWNALTSQK-T--HAIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV  161 (389)
Q Consensus        88 dg~v~iw~~~~~~~-~--~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v  161 (389)
                      +.-|++|++.+..- +  ...-...+.++-++|+|+++.|.++..   +|.|..|.++...   +.+...........+.
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~---G~Lt~ln~~~~~g~~p   91 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD---GRLTFLNRQTLPGSPP   91 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC---CeEEEeeccccCCCCC
Confidence            45699999874321 1  112234567899999999999988754   5778888887631   2222333333333444


Q ss_pred             EEEEEeeCCCcEEEEeeCCCeEEEEeCCC-CeeEEE---ecCccc----CCCCCCeeEEEeeCCCCcEEEEeeC-CCceE
Q 016458          162 SCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSV---FGGEFQ----SGHTADVLSVSISGSNSRMFVSGSC-DSTAR  232 (389)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~---~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~  232 (389)
                      ..+++++++..++.+-...|.|.++-+.. |.....   ......    ......+....+.| +++++++.+- --.|.
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~  170 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIF  170 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEE
Confidence            78999999854444445679999999866 332222   110000    11122288889999 6666666543 45799


Q ss_pred             EEeCCCCCcce---eEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCC-ceeeEeeccC----CCCCCCCeeEE
Q 016458          233 LWDTRVASRAV---RTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTG-HQLQVYYQQH----GENEIPHVTSI  303 (389)
Q Consensus       233 i~d~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~----~~~~~~~i~~~  303 (389)
                      +|++..+....   ..+ ......+.|.|+|++++.++.+ -+++|.+|..... ..+..+....    .-....+...+
T Consensus       171 ~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI  249 (346)
T COG2706         171 LYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI  249 (346)
T ss_pred             EEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence            99998552111   112 2345678999999999987766 5899999998874 2222222111    11223357889


Q ss_pred             EeCCCCCEEEEEec-CCcEEEEEcccc-eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC-eeEEeecceec--cc
Q 016458          304 AFSISGRLLFAGYS-NGDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-NLKVNLGFWRV--QE  378 (389)
Q Consensus       304 ~~~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~~~~W~~--~~  378 (389)
                      .+++||++|+++.. ...|.+|.+... ..+..+. ....+......+.|+++|++|++++.++ .|.+    +..  ++
T Consensus       250 his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~-~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~v----f~~d~~T  324 (346)
T COG2706         250 HISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG-ITPTEGQFPRDFNINPSGRFLIAANQKSDNITV----FERDKET  324 (346)
T ss_pred             EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE-EeccCCcCCccceeCCCCCEEEEEccCCCcEEE----EEEcCCC
Confidence            99999999998854 237888877643 2222211 1134444578999999999999998764 5666    554  45


Q ss_pred             Cccc
Q 016458          379 GALS  382 (389)
Q Consensus       379 ~~~~  382 (389)
                      |++.
T Consensus       325 G~L~  328 (346)
T COG2706         325 GRLT  328 (346)
T ss_pred             ceEE
Confidence            6554

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.55  E-value=5.8e-12  Score=96.27  Aligned_cols=270  Identities=13%  Similarity=0.052  Sum_probs=178.4

Q ss_pred             cCCcEEEEeCCCCC-eeEEEeeCCCcEEEEEECC-----CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccc
Q 016458           87 QDGRLIVWNALTSQ-KTHAIKLPCAWVMTCAFSP-----TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY  160 (389)
Q Consensus        87 ~dg~v~iw~~~~~~-~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  160 (389)
                      ....|-+|+..+.. .+..+-      ..+.|.|     ...+||.|+..|...+|...+...      .......|...
T Consensus        50 ~t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~------h~~~cd~snn~  117 (344)
T KOG4532|consen   50 KTISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG------HLYQCDVSNND  117 (344)
T ss_pred             ceeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCccc------ceeeecccccc
Confidence            44457777765543 111111      2334444     456899999999999999986431      23333344443


Q ss_pred             eEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC
Q 016458          161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS  240 (389)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  240 (389)
                      |+-+.=..+....+..++.|.++++.++..+......     ....-.+.++++++ ++.++++.+....|..|.+....
T Consensus       118 v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~-----h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~s  191 (344)
T KOG4532|consen  118 VTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV-----HNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDES  191 (344)
T ss_pred             hhhhhhhcccccceeeccCCcceeEEEEecCccccee-----eccccceeeeEEcC-CCceEEEecCCCcceEEEeCCcc
Confidence            3332222222345777888888888887765444333     11223488999998 88999999999999999998764


Q ss_pred             cceeE--EeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC--EEEEEe
Q 016458          241 RAVRT--FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGY  316 (389)
Q Consensus       241 ~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~  316 (389)
                      +.+..  .......-.+..|+.....+|++..||++.|||++....+........+.+.+.+..+.|++.|.  +|+..-
T Consensus       192 ey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE  271 (344)
T KOG4532|consen  192 EYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE  271 (344)
T ss_pred             ceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec
Confidence            44433  22233445678899989999999999999999999877666655555566777899999998765  555555


Q ss_pred             cCCcEEEEEcccceEEEeecCc---CCCCCC-CeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          317 SNGDCYVWDTLLAKVVLNLGSL---QNSHEG-RITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~---~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      .-+.+.+.|++++.....+...   ...|.. .|..-.|+.++..+.+.+.+...-     |++...
T Consensus       272 hfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae-----~ni~sr  333 (344)
T KOG4532|consen  272 HFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAE-----YNILSR  333 (344)
T ss_pred             CcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchhhhe-----eecccc
Confidence            5678999999987665544321   123333 388888888887777776654332     666543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=3.5e-12  Score=112.33  Aligned_cols=222  Identities=15%  Similarity=0.158  Sum_probs=133.9

Q ss_pred             eecccccCcEEEEEEcCCCCeEEEEecC-C--cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEE-ecCCCc--EE
Q 016458           61 RTLQGHAGKVYSLDWTSERNRIVSASQD-G--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC-GGLDSV--CS  134 (389)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~~~~~d-g--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~  134 (389)
                      +.+..+...+.+..|+|||+.|+..+.+ +  .|.+||+.+++.... ....+.....+|+|+|+.|+. ...+|.  |.
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy  289 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIY  289 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence            3455566788899999999988876543 2  588889888765332 222233457899999998865 455665  77


Q ss_pred             EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC--eEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (389)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  212 (389)
                      ++|+.++.        ...+..+........|+|++..++++...++  .|.++|+.+++.....      .........
T Consensus       290 ~~dl~tg~--------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt------~~g~~~~~~  355 (448)
T PRK04792        290 VVDIATKA--------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT------FEGEQNLGG  355 (448)
T ss_pred             EEECCCCC--------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe------cCCCCCcCe
Confidence            77776543        2233334455667899999865555554444  5677788777654332      111223456


Q ss_pred             EeeCCCCcEEEEee-CCC--ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC-C--eEEEEECCCCceee
Q 016458          213 SISGSNSRMFVSGS-CDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G--TCRLFDIRTGHQLQ  286 (389)
Q Consensus       213 ~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~  286 (389)
                      +|+| +++.++..+ .++  .|.++|+.++ . ...+... .......|+|+|+.|+..+.+ |  .+.+++.. +....
T Consensus       356 ~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~g-~-~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~  430 (448)
T PRK04792        356 SITP-DGRSMIMVNRTNGKFNIARQDLETG-A-MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKA  430 (448)
T ss_pred             eECC-CCCEEEEEEecCCceEEEEEECCCC-C-eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceE
Confidence            8999 555555544 344  4555677655 2 2233222 122345799999988776543 3  37777764 44444


Q ss_pred             EeeccCCCCCCCCeeEEEeCC
Q 016458          287 VYYQQHGENEIPHVTSIAFSI  307 (389)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~  307 (389)
                      .+.....     .+...+|+|
T Consensus       431 ~l~~~~g-----~~~~p~Wsp  446 (448)
T PRK04792        431 RLPAGQG-----EVKSPAWSP  446 (448)
T ss_pred             ECcCCCC-----CcCCCccCC
Confidence            4433222     255667766

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.54  E-value=5.7e-13  Score=101.18  Aligned_cols=207  Identities=14%  Similarity=0.180  Sum_probs=131.7

Q ss_pred             ecccccC-cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCe------------eEEEeeCCCcEEEEEECCCCcEEEEec
Q 016458           62 TLQGHAG-KVYSLDWTSERNRIVSASQDGRLIVWNALTSQK------------THAIKLPCAWVMTCAFSPTGQSVACGG  128 (389)
Q Consensus        62 ~l~~h~~-~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~  128 (389)
                      ...+|.+ .|+.+.++.+ ..|+++..++.+..+....+.+            ...+..+.++-.+-+.+-.++.+++++
T Consensus        30 ~i~~~~d~~~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~  108 (319)
T KOG4714|consen   30 EIMQHADVKLSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGY  108 (319)
T ss_pred             hcccccceEEEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecC
Confidence            3444444 3677777654 3677777776666655433322            222223333222223334567899999


Q ss_pred             CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC-----CCeEEEEeCCCCeeEEEecCcccC
Q 016458          129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----DQTCVLWDITTGLRTSVFGGEFQS  203 (389)
Q Consensus       129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~  203 (389)
                      .||.+.+++.+....      .......-...-.+.++...+ +.+.++..     -+..+.|+++........     .
T Consensus       109 ~dg~~~v~s~~~~~~------~~~~i~~~~~~~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~-----~  176 (319)
T KOG4714|consen  109 ADGSLAVFSTDKDLA------LMSRIPSIHSGSASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIPS-----K  176 (319)
T ss_pred             CCceEEEEechHHHh------hhhhcccccccccccceeecc-cEEecCCcceEeeccceeeeccccccccccc-----c
Confidence            999999999875211      111111111112233344443 33333321     233455555443322222     2


Q ss_pred             CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCC
Q 016458          204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRT  281 (389)
Q Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~  281 (389)
                      .....|.+++-+|...+++++|+.||.+.+||.++...+...+..|+.++..+-|+| ++..|++++.||.+..||..+
T Consensus       177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            333449999999988899999999999999999998778888899999999999999 778999999999999999765

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=3.5e-12  Score=111.30  Aligned_cols=292  Identities=17%  Similarity=0.149  Sum_probs=202.5

Q ss_pred             cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCC------------cEEEEecCCCcEEEE
Q 016458           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG------------QSVACGGLDSVCSIF  136 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~dg~i~vw  136 (389)
                      .-.++.|+|.| ++|-|+.. .|.+-|..+.+.+..+..|...|+.+.|.|-.            -.||++...|.|.+|
T Consensus        17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             cccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            36789999987 77777764 79999999999999999999999999998732            357788889999999


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCC---CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE---DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  213 (389)
                      |+....       ....+..|..++..++|.+..   ...|++-....+|.+|+..+|+.....     ........|+.
T Consensus        95 d~~~~s-------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~-----~ys~~iLs~f~  162 (1062)
T KOG1912|consen   95 DFVLAS-------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY-----DYSHEILSCFR  162 (1062)
T ss_pred             Eehhhh-------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc-----ccCCcceeeee
Confidence            998754       456677888999999998743   246777778899999999999998887     44555667799


Q ss_pred             eeCCCCcEEEEeeCCCceEEEeCCCC------CcceeEEeeecc------------c-------------eEEEEEecCC
Q 016458          214 ISGSNSRMFVSGSCDSTARLWDTRVA------SRAVRTFHGHEG------------D-------------VNTVKFFPDG  262 (389)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~------------~-------------i~~~~~~~~~  262 (389)
                      +.|.+...+..-+..|.+.+-+.-..      .+.++.-..|..            .             .-.++|+|.-
T Consensus       163 ~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~  242 (1062)
T KOG1912|consen  163 VDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW  242 (1062)
T ss_pred             eCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh
Confidence            99988888877777888777764321      112222222221            0             1135778866


Q ss_pred             CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC--CEEEEEecCCcEEEEEcccceEEEeec--Cc
Q 016458          263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG--RLLFAGYSNGDCYVWDTLLAKVVLNLG--SL  338 (389)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~  338 (389)
                      +.++.......+.++|++-..++.......+.     +.-+.+-|++  ..|++...||.+.+|-.+......+..  .+
T Consensus       243 rn~lfi~~prellv~dle~~~~l~vvpier~~-----akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l  317 (1062)
T KOG1912|consen  243 RNILFITFPRELLVFDLEYECCLAVVPIERGG-----AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASL  317 (1062)
T ss_pred             hceEEEEeccceEEEcchhhceeEEEEeccCC-----cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhh
Confidence            66666667788999999988888877665443     4455565654  489999999999999754311111110  00


Q ss_pred             C-----------CCCCCCeeEEEECCC-CCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          339 Q-----------NSHEGRITCLGLSAD-GSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       339 ~-----------~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      .           .-.+-.+...+..|. ...++.--.+|.+.+    |.+.+|+...
T Consensus       318 ~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~----w~l~~~ri~~  370 (1062)
T KOG1912|consen  318 SMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTF----WQLSNGRIHL  370 (1062)
T ss_pred             ccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHH----HhhhcCCcCc
Confidence            0           001112222233343 444555556788888    9999887654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.52  E-value=4.1e-11  Score=104.18  Aligned_cols=271  Identities=15%  Similarity=0.142  Sum_probs=169.3

Q ss_pred             CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccc
Q 016458           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK  158 (389)
Q Consensus        79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  158 (389)
                      +..+++++.+|.|..+|..+|+.+...............  ++..+++++.+|.+..+|..+++.       .-.... .
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~-------~W~~~~-~  134 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKE-------LWRAKL-S  134 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcE-------eeeecc-C
Confidence            568888899999999999999998877655432222222  467788888999999999887551       111111 1


Q ss_pred             cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC
Q 016458          159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV  238 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  238 (389)
                      +.+.+.....+  ..++.++.+|.|..+|..+++.+..+.............+....  + ..++.+..+|.+..+|.++
T Consensus       135 ~~~~~~p~v~~--~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~t  209 (377)
T TIGR03300       135 SEVLSPPLVAN--GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQT  209 (377)
T ss_pred             ceeecCCEEEC--CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccC
Confidence            22221111122  35777888999999999999988776321100000000111222  2 3667788889999999987


Q ss_pred             CCcceeEEeee-cc---c---eEEEEEec--CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC
Q 016458          239 ASRAVRTFHGH-EG---D---VNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  309 (389)
Q Consensus       239 ~~~~~~~~~~~-~~---~---i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  309 (389)
                      + +.+-..... ..   .   ...+.-+|  .+..+++++.+|.+..||..+++.........       .....  ..+
T Consensus       210 G-~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-------~~~p~--~~~  279 (377)
T TIGR03300       210 G-QPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-------YQGPA--VDD  279 (377)
T ss_pred             C-CEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-------ccCce--EeC
Confidence            7 333222110 00   0   00111111  35678888899999999999998766553211       11222  246


Q ss_pred             CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          310 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      ..+++++.+|.++.+|..+++.+......   ......+...  .+..|++++.+|.+.+    ++..+|++..
T Consensus       280 ~~vyv~~~~G~l~~~d~~tG~~~W~~~~~---~~~~~ssp~i--~g~~l~~~~~~G~l~~----~d~~tG~~~~  344 (377)
T TIGR03300       280 NRLYVTDADGVVVALDRRSGSELWKNDEL---KYRQLTAPAV--VGGYLVVGDFEGYLHW----LSREDGSFVA  344 (377)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEccccc---cCCccccCEE--ECCEEEEEeCCCEEEE----EECCCCCEEE
Confidence            68888889999999999999888765211   1111222222  3568899999999999    9999998763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=1.2e-11  Score=104.08  Aligned_cols=254  Identities=15%  Similarity=0.192  Sum_probs=167.5

Q ss_pred             EEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCC--cEEEE-----ecCCCcEEEEeCCCCCC
Q 016458           71 YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG--QSVAC-----GGLDSVCSIFNLNSPTD  143 (389)
Q Consensus        71 ~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~vw~~~~~~~  143 (389)
                      .+..|++|..+.|- -..+.+.+|+..+.+ ...-..|...++.+.++|.+  ..+|+     .+.-+.|+||...... 
T Consensus       129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~-~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~-  205 (566)
T KOG2315|consen  129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFK-TIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG-  205 (566)
T ss_pred             cccccccchhhhhh-hhcceEEEEecCCcc-ceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc-
Confidence            68888888754432 234579999987633 33334566779999999863  34443     3556789999887321 


Q ss_pred             CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC-----------CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458          144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (389)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  212 (389)
                      ..... ..+.+  ....=..+.|++.+..+|+.++.           ..++++.++....+...+      ...++|.++
T Consensus       206 ~~~~~-a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L------~k~GPVhdv  276 (566)
T KOG2315|consen  206 QHQPV-ANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL------LKEGPVHDV  276 (566)
T ss_pred             ccchh-hhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec------CCCCCceEE
Confidence            00011 11111  12223457888877666665543           246888888844444443      567899999


Q ss_pred             EeeCCCCcEEEE-eeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec---CCeEEEEECCCCceeeEe
Q 016458          213 SISGSNSRMFVS-GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFDIRTGHQLQVY  288 (389)
Q Consensus       213 ~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~  288 (389)
                      .|+|....+.++ |-.-..+.|||++  ..++..+  .+++=+++-|+|.|++|+.++-   -|.+.+||+.+.+.+..+
T Consensus       277 ~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~  352 (566)
T KOG2315|consen  277 TWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF  352 (566)
T ss_pred             EECCCCCEEEEEEecccceEEEEcCC--CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence            999944333333 4456789999988  3455444  4677889999999999998875   478999999997777766


Q ss_pred             eccCCCCCCCCeeEEEeCCCCCEEEEEec------CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458          289 YQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (389)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (389)
                      ....       .+-+.|+|||+++++++.      |+.++||++ +|..+..-.     .......+.|-|
T Consensus       353 ~a~~-------tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~-----f~sEL~qv~W~P  410 (566)
T KOG2315|consen  353 KAAN-------TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKM-----FKSELLQVEWRP  410 (566)
T ss_pred             ccCC-------ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhh-----hhHhHhheeeee
Confidence            5432       467899999999999875      678999997 455444321     111456666665

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.52  E-value=4.2e-10  Score=108.42  Aligned_cols=252  Identities=15%  Similarity=0.132  Sum_probs=164.6

Q ss_pred             EEEEEcCC-CCeEEEEecCCcEEEEeCCCCCeeEEEee-C-------------CCcEEEEEECCCCcEEEEec-CCCcEE
Q 016458           71 YSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKL-P-------------CAWVMTCAFSPTGQSVACGG-LDSVCS  134 (389)
Q Consensus        71 ~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~l~~~~-~dg~i~  134 (389)
                      ..+++++. ++++++-+.++.|++||.. +..+..+.. .             -.....++++++++.|+++. .++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788875 5567777788899999975 454443332 1             12357899999888666554 467899


Q ss_pred             EEeCCCCCCCCCCCcceeeecc-----------------cccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEe
Q 016458          135 IFNLNSPTDKDGNLPVSRMLSG-----------------HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF  197 (389)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  197 (389)
                      ++|+.++.        ...+.+                 .-.....++++|++..++++.+.++.|++||..++......
T Consensus       650 ~id~~~~~--------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~  721 (1057)
T PLN02919        650 EIDFVNET--------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS  721 (1057)
T ss_pred             EEecCCCE--------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe
Confidence            99986532        111100                 01234678999965577888888999999999887543221


Q ss_pred             cCccc---------CCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeE------------Eee--------
Q 016458          198 GGEFQ---------SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT------------FHG--------  248 (389)
Q Consensus       198 ~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------~~~--------  248 (389)
                      .....         ...-.....++++|+.+.++++.+.++.|++||+.++...+..            +..        
T Consensus       722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~  801 (1057)
T PLN02919        722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV  801 (1057)
T ss_pred             cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence            10000         0111345679999944446677777899999998865221100            000        


Q ss_pred             eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC--------CCCCCCCeeEEEeCCCCCEEEEEecCCc
Q 016458          249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLLFAGYSNGD  320 (389)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~~dg~  320 (389)
                      .-.....++++++|+++++-+.++.|++||..++..........        ..........++++++|+.+++-+.++.
T Consensus       802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~  881 (1057)
T PLN02919        802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL  881 (1057)
T ss_pred             hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence            01124689999999988888899999999998765543322110        0111224678999999998888888999


Q ss_pred             EEEEEcccceE
Q 016458          321 CYVWDTLLAKV  331 (389)
Q Consensus       321 i~i~d~~~~~~  331 (389)
                      |++||+.+++.
T Consensus       882 Irvid~~~~~~  892 (1057)
T PLN02919        882 IRYLDLNKGEA  892 (1057)
T ss_pred             EEEEECCCCcc
Confidence            99999988764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=2.4e-11  Score=107.43  Aligned_cols=215  Identities=13%  Similarity=0.086  Sum_probs=136.2

Q ss_pred             cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC--CeEEEEeCCCCeeEEEecCcccCCCCCCe
Q 016458          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADV  209 (389)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~v  209 (389)
                      .|.++|.+...        ...+..+...+....|+|+|..++++...+  ..|.+||+.++......      ......
T Consensus       180 ~l~~~d~~g~~--------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~------~~~g~~  245 (430)
T PRK00178        180 TLQRSDYDGAR--------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT------NFEGLN  245 (430)
T ss_pred             EEEEECCCCCC--------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc------CCCCCc
Confidence            36677776532        233445667789999999985444444333  46999999888654432      223345


Q ss_pred             eEEEeeCCCCcEEE-EeeCCC--ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec-CC--eEEEEECCCCc
Q 016458          210 LSVSISGSNSRMFV-SGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGH  283 (389)
Q Consensus       210 ~~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~  283 (389)
                      ....|+| +++.|+ +...+|  .|++||+.++  ....+..+........|+|||+.|+..+. +|  .|+++|+.+++
T Consensus       246 ~~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~  322 (430)
T PRK00178        246 GAPAWSP-DGSKLAFVLSKDGNPEIYVMDLASR--QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR  322 (430)
T ss_pred             CCeEECC-CCCEEEEEEccCCCceEEEEECCCC--CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            5789999 555554 555555  5888898865  23445555555677899999998876653 33  57788887776


Q ss_pred             eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC-C--cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEe
Q 016458          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-G--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT  360 (389)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  360 (389)
                      ....... ..     ......|+|+|++|+..+.+ +  .|.++|+.+++.. .+.   ..  .......|+|||+.++.
T Consensus       323 ~~~lt~~-~~-----~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt---~~--~~~~~p~~spdg~~i~~  390 (430)
T PRK00178        323 AERVTFV-GN-----YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT---DT--SLDESPSVAPNGTMLIY  390 (430)
T ss_pred             EEEeecC-CC-----CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc---CC--CCCCCceECCCCCEEEE
Confidence            4333211 11     13457899999998877643 3  5888999887643 332   11  12234589999999887


Q ss_pred             eeCC-C--eeEEeecceecccC
Q 016458          361 GSWD-T--NLKVNLGFWRVQEG  379 (389)
Q Consensus       361 ~~~d-g--~i~i~~~~W~~~~~  379 (389)
                      .+.+ |  .+.+    +++..+
T Consensus       391 ~~~~~g~~~l~~----~~~~g~  408 (430)
T PRK00178        391 ATRQQGRGVLML----VSINGR  408 (430)
T ss_pred             EEecCCceEEEE----EECCCC
Confidence            7654 3  3555    666543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.6e-11  Score=107.35  Aligned_cols=223  Identities=13%  Similarity=0.105  Sum_probs=132.6

Q ss_pred             cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCc--EEEEeeCC--CeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT--HLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTA  207 (389)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~  207 (389)
                      .|.+.|.+...        ...+......+..-.|+|+|..  ++++...+  ..|.+.++.+++.....      ....
T Consensus       166 ~l~~~d~dG~~--------~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt------~~~g  231 (428)
T PRK01029        166 ELWSVDYDGQN--------LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL------ALQG  231 (428)
T ss_pred             eEEEEcCCCCC--------ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee------cCCC
Confidence            56666665532        1223333445567799999855  23344444  46888899887655443      2334


Q ss_pred             CeeEEEeeCCCCcEEEE-eeCCC----ceEEEeCCCC--CcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEE--
Q 016458          208 DVLSVSISGSNSRMFVS-GSCDS----TARLWDTRVA--SRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLF--  277 (389)
Q Consensus       208 ~v~~~~~~~~~~~~l~~-~~~dg----~i~i~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~--  277 (389)
                      ......|+| +++.|+. ...+|    .+.+|++...  .........+.......+|+|||+.|+..+ .+|...+|  
T Consensus       232 ~~~~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~  310 (428)
T PRK01029        232 NQLMPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM  310 (428)
T ss_pred             CccceEECC-CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence            455689999 6655554 43333    3344666542  122222222223446789999999887665 45654444  


Q ss_pred             ECCC-CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC---CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458          278 DIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (389)
Q Consensus       278 d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (389)
                      ++.. +.....+....     ..+....|+|||+.|+....+   ..|.+||+.+++.....     .....+....|+|
T Consensus       311 ~~~~~g~~~~~lt~~~-----~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-----~~~~~~~~p~wSp  380 (428)
T PRK01029        311 QIDPEGQSPRLLTKKY-----RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-----TSPENKESPSWAI  380 (428)
T ss_pred             ECcccccceEEeccCC-----CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-----CCCCCccceEECC
Confidence            4432 22222232211     135678999999988876543   36999999888764332     2234567899999


Q ss_pred             CCCeEEeeeC---CCeeEEeecceecccCcccC
Q 016458          354 DGSALCTGSW---DTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       354 ~~~~l~~~~~---dg~i~i~~~~W~~~~~~~~~  383 (389)
                      ||+.|+....   ...|.+    |++.+++...
T Consensus       381 DG~~L~f~~~~~g~~~L~~----vdl~~g~~~~  409 (428)
T PRK01029        381 DSLHLVYSAGNSNESELYL----ISLITKKTRK  409 (428)
T ss_pred             CCCEEEEEECCCCCceEEE----EECCCCCEEE
Confidence            9998875443   345666    8988876543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.51  E-value=1.4e-10  Score=109.66  Aligned_cols=296  Identities=13%  Similarity=0.098  Sum_probs=187.2

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEE----eCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCC
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVW----NALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT  142 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  142 (389)
                      .+.|.++.|-++...++.+..+|.|.+.    +..+.. +...-.-...|.+++||||+..|+..+.++++.+.+-+-..
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~  153 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP  153 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence            4579999999999999999999999999    443333 22233344669999999999999999989888776432100


Q ss_pred             ----------C------------CC-------CCC--------cc----eeeecccccceEEEEEeeCCCcEEEEeeC--
Q 016458          143 ----------D------------KD-------GNL--------PV----SRMLSGHKGYVSCCQYVPDEDTHLITSSG--  179 (389)
Q Consensus       143 ----------~------------~~-------~~~--------~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--  179 (389)
                                .            +.       ++.        ..    ...+. +...-..++|-.|| .+|++.+.  
T Consensus       154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG-~yFAVss~~~  231 (928)
T PF04762_consen  154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG-EYFAVSSVEP  231 (928)
T ss_pred             EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC-cEEEEEEEEc
Confidence                      0            00       000        00    01111 33355678999998 67776654  


Q ss_pred             -C---CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC---CCceEEEeCCCCCcceeEEe--eec
Q 016458          180 -D---QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---DSTARLWDTRVASRAVRTFH--GHE  250 (389)
Q Consensus       180 -d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~--~~~  250 (389)
                       .   ..++||+-+ |......     ....+--.+++|.| .++++++.-.   ...|.+|.-+....--..+.  ...
T Consensus       232 ~~~~~R~iRVy~Re-G~L~stS-----E~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~  304 (928)
T PF04762_consen  232 ETGSRRVIRVYSRE-GELQSTS-----EPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEE  304 (928)
T ss_pred             CCCceeEEEEECCC-ceEEecc-----ccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCC
Confidence             2   579999966 5554443     33344456789999 8888887764   34566776442211111222  345


Q ss_pred             cceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcc--
Q 016458          251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTL--  327 (389)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~--  327 (389)
                      ..|..+.|++++..|+....|. |.+|-..+..-..........  ...+..+.|+|... .|.+.+.+|.+..+++.  
T Consensus       305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~--~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~  381 (928)
T PF04762_consen  305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS--SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD  381 (928)
T ss_pred             ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC--CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence            6799999999999999987665 999998775532222221111  11245588998544 56666666766655431  


Q ss_pred             --cc--------eEEEee----------c---------CcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          328 --LA--------KVVLNL----------G---------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       328 --~~--------~~~~~~----------~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                        .+        ..+..+          .         ...-....+|.+++|++++..+++-..||.+.+    |....
T Consensus       382 v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~----~~~~~  457 (928)
T PF04762_consen  382 VSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSI----YEWDL  457 (928)
T ss_pred             EEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEE----EEecC
Confidence              11        011111          0         000123568999999999888999999999999    66544


Q ss_pred             C
Q 016458          379 G  379 (389)
Q Consensus       379 ~  379 (389)
                      .
T Consensus       458 ~  458 (928)
T PF04762_consen  458 K  458 (928)
T ss_pred             C
Confidence            3

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.51  E-value=2.9e-13  Score=127.72  Aligned_cols=228  Identities=16%  Similarity=0.284  Sum_probs=166.3

Q ss_pred             eeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEE
Q 016458          106 KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL  185 (389)
Q Consensus       106 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  185 (389)
                      ..+-..|.++.-+|...+.++|+.||.|++|....+..    . +.....+ ...|+.+.|+.+| +.+..+..||.+.+
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~----v-~~~rt~g-~s~vtr~~f~~qG-nk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ----V-VCFRTAG-NSRVTRSRFNHQG-NKFGIVDGDGDLSL 2277 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe----E-EEeeccC-cchhhhhhhcccC-CceeeeccCCceee
Confidence            34446688999999999999999999999999987541    1 1222223 3889999999998 67889999999999


Q ss_pred             EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee---CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC
Q 016458          186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG  262 (389)
Q Consensus       186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (389)
                      |... .+.....     ..|......+.|-.   .++++++   .++.+.+||.......-.....|.+.++++++-|..
T Consensus      2278 ~q~~-pk~~~s~-----qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2278 WQAS-PKPYTSW-----QCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH 2348 (2439)
T ss_pred             cccC-Ccceecc-----ccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc
Confidence            9987 3333333     56777777777764   4566554   478999999876544333448899999999999999


Q ss_pred             CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCC
Q 016458          263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH  342 (389)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  342 (389)
                      +.|++|+.+|.|++||++..+....+..              +. ...++++|+..|.++||++.....+.++.... +|
T Consensus      2349 qllisggr~G~v~l~D~rqrql~h~~~~--------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~-ak 2412 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLRHTFQA--------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH-AK 2412 (2439)
T ss_pred             eEEEecCCcCcEEEeehHHHHHHHHhhh--------------hh-hhheeeccCcccceEEEEccccchhhcCchhh-cc
Confidence            9999999999999999998776665532              33 45689999999999999998887777765321 22


Q ss_pred             CCC--e--eEEEECCCCCeEEeeeCCCe
Q 016458          343 EGR--I--TCLGLSADGSALCTGSWDTN  366 (389)
Q Consensus       343 ~~~--v--~~~~~~~~~~~l~~~~~dg~  366 (389)
                      .+-  .  ..+... .+..|.+++.||+
T Consensus      2413 ~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2413 QGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred             cchhhhcCceeeec-cCceEEEecCCCC
Confidence            221  1  122222 2345677777763

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.50  E-value=1.5e-10  Score=111.41  Aligned_cols=255  Identities=12%  Similarity=0.138  Sum_probs=165.4

Q ss_pred             EEEEECCC-CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeec--------------ccccceEEEEEeeCCCcEEEEe
Q 016458          113 MTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS--------------GHKGYVSCCQYVPDEDTHLITS  177 (389)
Q Consensus       113 ~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~l~~~  177 (389)
                      ..+++++. +..+++-..++.|.++|.....        ...+.              ..-.....+++.++++.++++-
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~--------i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD  642 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF--------IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD  642 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCE--------EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe
Confidence            45788774 5566776778899999986521        11111              1122457889998864445555


Q ss_pred             eCCCeEEEEeCCCCeeEEEecCcc-----cC------CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE
Q 016458          178 SGDQTCVLWDITTGLRTSVFGGEF-----QS------GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF  246 (389)
Q Consensus       178 ~~dg~i~iwd~~~~~~~~~~~~~~-----~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  246 (389)
                      ..++.|+++|+.++..........     ..      ..-.....++++|.++.++++.+.++.|++||...+.  +..+
T Consensus       643 t~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~--v~~~  720 (1057)
T PLN02919        643 TENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV--TRVF  720 (1057)
T ss_pred             CCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe--EEEE
Confidence            567889999988765432211000     00      0012346789998667777888888999999987542  2222


Q ss_pred             ee---------------eccceEEEEEecCCCEE-EEEecCCeEEEEECCCCceeeEeecc---------CC-------C
Q 016458          247 HG---------------HEGDVNTVKFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQVYYQQ---------HG-------E  294 (389)
Q Consensus       247 ~~---------------~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~-------~  294 (389)
                      .+               .-.....++++|+++.| ++-+.++.|++||+.++.........         .+       .
T Consensus       721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~  800 (1057)
T PLN02919        721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE  800 (1057)
T ss_pred             ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence            11               11235679999998855 55566789999999876532111000         00       0


Q ss_pred             CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCc---------CCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458          295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL---------QNSHEGRITCLGLSADGSALCTGSWDT  365 (389)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~dg  365 (389)
                      ........++++++|+.+++-..++.|++||..++.........         ..+.-.....++++++|+.+++-+.++
T Consensus       801 ~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn  880 (1057)
T PLN02919        801 VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS  880 (1057)
T ss_pred             hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence            01112468999999998888888999999999877665433210         011223678999999999999988999


Q ss_pred             eeEEeecceecccCcc
Q 016458          366 NLKVNLGFWRVQEGAL  381 (389)
Q Consensus       366 ~i~i~~~~W~~~~~~~  381 (389)
                      .|++    |++.+++.
T Consensus       881 ~Irv----id~~~~~~  892 (1057)
T PLN02919        881 LIRY----LDLNKGEA  892 (1057)
T ss_pred             EEEE----EECCCCcc
Confidence            9999    99998865

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.49  E-value=1.6e-10  Score=100.47  Aligned_cols=260  Identities=16%  Similarity=0.109  Sum_probs=160.0

Q ss_pred             CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccc
Q 016458           78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH  157 (389)
Q Consensus        78 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  157 (389)
                      ++..++.++.+|.+..+|..+|+.+...............  .+..++.++.+|.+..||..+++.       .-.....
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-------~W~~~~~  174 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-------LWTYSRV  174 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-------eeEEccC
Confidence            3567888889999999999999988776644321111111  345677788899999999987652       1111111


Q ss_pred             ccce-----EEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCC--CC---e-eEEEeeCCCCcEEEEee
Q 016458          158 KGYV-----SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT--AD---V-LSVSISGSNSRMFVSGS  226 (389)
Q Consensus       158 ~~~v-----~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~---v-~~~~~~~~~~~~l~~~~  226 (389)
                      ...+     .+... .+  ..++.+..+|.+..+|..+++..............  ..   + .+..+   .+..+++++
T Consensus       175 ~~~~~~~~~~sp~~-~~--~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~  248 (377)
T TIGR03300       175 TPALTLRGSASPVI-AD--GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVS  248 (377)
T ss_pred             CCceeecCCCCCEE-EC--CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEE
Confidence            1000     01111 12  35778888999999999999876654211000000  00   0 11111   234677788


Q ss_pred             CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeC
Q 016458          227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  306 (389)
Q Consensus       227 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  306 (389)
                      .+|.++.||..++ +.+-... . .......  ..+..+++++.+|.+..+|..+++.+.........    ....... 
T Consensus       249 ~~g~l~a~d~~tG-~~~W~~~-~-~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~----~~ssp~i-  318 (377)
T TIGR03300       249 YQGRVAALDLRSG-RVLWKRD-A-SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR----QLTAPAV-  318 (377)
T ss_pred             cCCEEEEEECCCC-cEEEeec-c-CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCC----ccccCEE-
Confidence            8999999999877 4333322 1 1111222  24678888889999999999999877554221111    1122222 


Q ss_pred             CCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCe-eEEEECCCCCeEEeeeCCCeeEE
Q 016458          307 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI-TCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       307 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                       .+..+++++.+|.|+++|..+++.+..+    ..+...+ .+.++. + ..|+.++.||.|..
T Consensus       319 -~g~~l~~~~~~G~l~~~d~~tG~~~~~~----~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~  375 (377)
T TIGR03300       319 -VGGYLVVGDFEGYLHWLSREDGSFVARL----KTDGSGIASPPVVV-G-DGLLVQTRDGDLYA  375 (377)
T ss_pred             -ECCEEEEEeCCCEEEEEECCCCCEEEEE----EcCCCccccCCEEE-C-CEEEEEeCCceEEE
Confidence             4668999999999999999999999888    3344332 222232 3 35888999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.45  E-value=3e-09  Score=88.32  Aligned_cols=155  Identities=15%  Similarity=0.148  Sum_probs=118.3

Q ss_pred             eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCC-eEEEEECCCCceeeEeeccC
Q 016458          214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-TCRLFDIRTGHQLQVYYQQH  292 (389)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~  292 (389)
                      |++.++++++..+. |...+.+...+ .  ..--+|.+.|.-..+..+++-++.|..|| .+-+||.++++... +....
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~-~--~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~l  401 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDG-Y--SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDL  401 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCC-e--eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCc
Confidence            44557788887775 67777766543 2  22235677788888888888899999999 89999998775443 33333


Q ss_pred             CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeec
Q 016458          293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLG  372 (389)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~  372 (389)
                      +     .|-++..+++|++++++.....+.+.|+.++.....-    +...+-|+.+.|+|+++++|-+--+|.+.-...
T Consensus       402 g-----~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id----kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ik  472 (668)
T COG4946         402 G-----NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID----KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIK  472 (668)
T ss_pred             c-----ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec----ccccceeEEEEEcCCceeEEEecCcceeeeeEE
Confidence            3     3999999999999999999999999999999876554    667789999999999999998887775332223


Q ss_pred             ceecccCccc
Q 016458          373 FWRVQEGALS  382 (389)
Q Consensus       373 ~W~~~~~~~~  382 (389)
                      ++|+..++..
T Consensus       473 lydm~~~Kiy  482 (668)
T COG4946         473 LYDMDGGKIY  482 (668)
T ss_pred             EEecCCCeEE
Confidence            3999888764

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.45  E-value=1.3e-11  Score=97.71  Aligned_cols=198  Identities=16%  Similarity=0.231  Sum_probs=147.7

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeC----CCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCC
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNA----LTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT  142 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  142 (389)
                      ..+++++.+.++...|++|-..|++.-+.+    +.....+....|...+..+-|+.....+++.+.|..+.---.+.+.
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~  147 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN  147 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence            457999999999999999999999998854    3445566667888999999999999999999998876544444332


Q ss_pred             CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC--CCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT--TGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (389)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (389)
                      ... ..    .+   ....+++.+.-   .+...|...|.|..-.+.  .-..+..+     .+|...+.+++|.| .+.
T Consensus       148 ~lg-~Y----~~---~~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~-----~~h~~~~~~l~Wd~-~~~  210 (404)
T KOG1409|consen  148 RLG-GY----NF---ETPASALQFDA---LYAFVGDHSGQITMLKLEQNGCQLITTF-----NGHTGEVTCLKWDP-GQR  210 (404)
T ss_pred             ccc-ce----Ee---eccCCCCceee---EEEEecccccceEEEEEeecCCceEEEE-----cCcccceEEEEEcC-CCc
Confidence            110 00    00   01111111211   144555556666555443  33455555     78999999999999 888


Q ss_pred             EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCC
Q 016458          221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT  281 (389)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  281 (389)
                      ++++|..|..+.+||+-........+.+|...|..+..-+--+.+++++.||.|.+|+++.
T Consensus       211 ~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  211 LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            9999999999999999877677788889999999999988888999999999999999864

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=5.4e-12  Score=109.29  Aligned_cols=243  Identities=16%  Similarity=0.168  Sum_probs=172.4

Q ss_pred             CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCC--------CCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC
Q 016458          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK--------DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ  181 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  181 (389)
                      ....|+.|+....++++|+.||.++|..+.+....        ...+...+++.+|+..|.-+.|+... +.|-+...+|
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~G   93 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTSG   93 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCCCc
Confidence            45789999999999999999999999998875421        22344567789999999999999886 6788899999


Q ss_pred             eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecC
Q 016458          182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD  261 (389)
Q Consensus       182 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~  261 (389)
                      .|.+|-+-.+.......   .....+.|.+++|+. ++..+.....||.|.+=.+....---+.+.+  .....+.|++|
T Consensus        94 lIiVWmlykgsW~EEMi---NnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D  167 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMI---NNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSED  167 (1189)
T ss_pred             eEEEEeeecccHHHHHh---hCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccceecchhcch--heccceeeccc
Confidence            99999988875443321   134566799999998 8888888889998887666543111111221  12457899999


Q ss_pred             CCEEEEEecCCeEEEEECCCCc-------eeeEeeccCCCCCCCCeeEEEeC--------CCCCEEEEEecCCcEEEEEc
Q 016458          262 GNRFGTGSDDGTCRLFDIRTGH-------QLQVYYQQHGENEIPHVTSIAFS--------ISGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       262 ~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~l~~~~~dg~i~i~d~  326 (389)
                      .+.++.+-.+|.+.+||....-       +........ .+....|..+.|.        |+...|+++..+|.+.|..-
T Consensus       168 ~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~-s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~  246 (1189)
T KOG2041|consen  168 LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIF-SNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS  246 (1189)
T ss_pred             HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeee-cCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence            9999999999999999965321       101111000 0111124555553        57889999999999988765


Q ss_pred             ccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458          327 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (389)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  365 (389)
                      .+......+     ...-.|....|+++|..|+.+|.|.
T Consensus       247 eND~~Pvv~-----dtgm~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  247 ENDPEPVVV-----DTGMKIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             cCCCCCeEE-----ecccEeecceecCCCcEEEEccCcc
Confidence            544433333     1225788999999999999998654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.44  E-value=8.7e-13  Score=110.89  Aligned_cols=249  Identities=16%  Similarity=0.212  Sum_probs=172.5

Q ss_pred             eEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC
Q 016458          102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ  181 (389)
Q Consensus       102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  181 (389)
                      +..+.+|...|..++--.+.+.+++++.|.+|++|.++......+...+..++..|+.+|.++.|..+. +++  ++.||
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i--~ScD~  804 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSI--ASCDG  804 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-cee--eeccC
Confidence            345567888888887777888999999999999999998666656666788899999999999999875 344  46688


Q ss_pred             eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC-CCcEEEEe-eCCCceEEEeCCCCCcceeEEe-----eeccceE
Q 016458          182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSG-SCDSTARLWDTRVASRAVRTFH-----GHEGDVN  254 (389)
Q Consensus       182 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-----~~~~~i~  254 (389)
                      .|.+||.--+..+......   ...+.+..+...+. +..++..+ +...+|+++|.+.. .-...++     +.+..++
T Consensus       805 giHlWDPFigr~Laq~~da---pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc-e~~~E~kVcna~~Pna~~R  880 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDA---PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC-EWTCELKVCNAPGPNALTR  880 (1034)
T ss_pred             cceeecccccchhHhhhcC---cccCCCceeEecccCcchheeeeccchhhheeeecccc-cceeeEEeccCCCCchhee
Confidence            9999998887766644322   12223333333332 33444444 77899999999976 4333333     3345688


Q ss_pred             EEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEE-EEcccceEEE
Q 016458          255 TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV-WDTLLAKVVL  333 (389)
Q Consensus       255 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~  333 (389)
                      +++..+.|++++++-.+|.|.+.|.++|+.+..+..-...     ...++ .|..+.++....|.++.+ |....+....
T Consensus       881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecd-----llqla-apsdq~L~~saldHslaVnWhaldgimh~  954 (1034)
T KOG4190|consen  881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECD-----LLQLA-APSDQALAQSALDHSLAVNWHALDGIMHL  954 (1034)
T ss_pred             EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccch-----hhhhc-CchhHHHHhhcccceeEeeehhcCCeeee
Confidence            9999999999999999999999999999988776553322     33333 256677888888888888 9877776665


Q ss_pred             eecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       334 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      ..+    ....+..-+.  .-|..|+++.....+.+
T Consensus       955 q~k----pppepahflq--svgpSLV~a~~Gn~lgV  984 (1034)
T KOG4190|consen  955 QDK----PPPEPAHFLQ--SVGPSLVTAQNGNILGV  984 (1034)
T ss_pred             ccC----CCCcchhhhh--ccCceeEEeccCcEEEE
Confidence            553    2221111111  12445666655555555

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.42  E-value=1.6e-11  Score=97.21  Aligned_cols=209  Identities=17%  Similarity=0.305  Sum_probs=146.8

Q ss_pred             CcEEEEEEcCCCC--eEEEEecCCcEEEEeCCCCCeeE---------------EE---------------------eeCC
Q 016458           68 GKVYSLDWTSERN--RIVSASQDGRLIVWNALTSQKTH---------------AI---------------------KLPC  109 (389)
Q Consensus        68 ~~v~~~~~~~~~~--~l~~~~~dg~v~iw~~~~~~~~~---------------~~---------------------~~~~  109 (389)
                      ..|+.+.|.++++  .++..+.|.+|++|.+.......               .+                     ..|.
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt  164 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT  164 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence            4589999999775  56777889999999764321100               00                     1345


Q ss_pred             CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecc-----cccceEEEEEeeCCCcEEEEeeCCCeEE
Q 016458          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-----HKGYVSCCQYVPDEDTHLITSSGDQTCV  184 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~  184 (389)
                      --|+++.++.|...++++. |=.|.+|+++-...   .... .-++.     -...|++..|+|..-+.|+-.+..|+|+
T Consensus       165 yhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~---sFnI-VDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  165 YHINSISVNSDKETFLSAD-DLRINLWNLEIIDQ---SFNI-VDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR  239 (433)
T ss_pred             eEeeeeeecCccceEeecc-ceeeeeccccccCC---ceeE-EEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence            5689999999999888874 67899999886331   1111 11222     2456889999998778899999999999


Q ss_pred             EEeCCCCeeEEE----ecCc-------ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeecc--
Q 016458          185 LWDITTGLRTSV----FGGE-------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG--  251 (389)
Q Consensus       185 iwd~~~~~~~~~----~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--  251 (389)
                      +.|++....-..    +...       +...--..|..+.|++ +++++++-.. -+|++||+....+++..+.-|..  
T Consensus       240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr  317 (433)
T KOG1354|consen  240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLR  317 (433)
T ss_pred             EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHH
Confidence            999985422111    1000       0012234578899998 8888887543 68999999877788888877642  


Q ss_pred             -------------ceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458          252 -------------DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (389)
Q Consensus       252 -------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (389)
                                   .-..++|+.++.++++|+....+++|++..+.
T Consensus       318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence                         12457899899999999999999999976554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.41  E-value=6.3e-12  Score=98.18  Aligned_cols=257  Identities=13%  Similarity=0.172  Sum_probs=168.0

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC-----eeEEEeeCC------------CcEEEEEECCCC--cEEEEe
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-----KTHAIKLPC------------AWVMTCAFSPTG--QSVACG  127 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~  127 (389)
                      .+.|+++.|...|.+|++|...|.|.+|.-....     ....++.|.            ..|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4569999999999999999999999999754432     122234442            457888887644  456777


Q ss_pred             cCCCcEEEEeCCCCCCC---------------CCC---------------------CcceeeecccccceEEEEEeeCCC
Q 016458          128 GLDSVCSIFNLNSPTDK---------------DGN---------------------LPVSRMLSGHKGYVSCCQYVPDED  171 (389)
Q Consensus       128 ~~dg~i~vw~~~~~~~~---------------~~~---------------------~~~~~~~~~~~~~v~~~~~~~~~~  171 (389)
                      +.|.+|++|.+.....+               .+.                     .+.......|.--|.++.+..+. 
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~-  184 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK-  184 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch-
Confidence            78999999998764200               000                     00111224677788899998875 


Q ss_pred             cEEEEeeCCCeEEEEeCCCCeeE---EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc-----e
Q 016458          172 THLITSSGDQTCVLWDITTGLRT---SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-----V  243 (389)
Q Consensus       172 ~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~  243 (389)
                      . .+....|-.|.+|+++-....   .-+.+........-|++..|+|...+.+.-.+..|.|++-|+|....+     +
T Consensus       185 e-t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 E-TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             h-eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            3 444567788999998754221   122111111223458899999988888888999999999999943211     1


Q ss_pred             eE----------EeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc-eeeEeeccCCC----------CCCCCeeE
Q 016458          244 RT----------FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH-QLQVYYQQHGE----------NEIPHVTS  302 (389)
Q Consensus       244 ~~----------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~----------~~~~~i~~  302 (389)
                      ..          +.+-...|..+.|+++|+++++-.. -+|++||++..+ ++.++..+...          .....-..
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe  342 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE  342 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence            11          1122346788999999999988765 489999998754 33443222110          00111245


Q ss_pred             EEeCCCCCEEEEEecCCcEEEEEc
Q 016458          303 IAFSISGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       303 ~~~~~~~~~l~~~~~dg~i~i~d~  326 (389)
                      +.||.|.+.+.+|+..+..-+|-.
T Consensus       343 isfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         343 ISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             EEecCCcccccccccccceeeecc
Confidence            778888889999988877777753

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.40  E-value=8.1e-10  Score=92.24  Aligned_cols=261  Identities=18%  Similarity=0.165  Sum_probs=157.7

Q ss_pred             cEEEEEEcCCCCeEEEEecCC---------------cEEEEeCCCCCeeEEEeeCCCc--EE-EEEECCCCcEEEEe---
Q 016458           69 KVYSLDWTSERNRIVSASQDG---------------RLIVWNALTSQKTHAIKLPCAW--VM-TCAFSPTGQSVACG---  127 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg---------------~v~iw~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~---  127 (389)
                      .|.-+.|+|.+++|.+-+..+               .+.+||..++..+..+.....+  .. -+.|+.+.+++|--   
T Consensus        73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~  152 (561)
T COG5354          73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS  152 (561)
T ss_pred             CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC
Confidence            488999999999999876433               4899999988777666544332  22 34444444433322   


Q ss_pred             ----------------------------------------------cCCCcEEEEeCCCCCCCCCCCcceeeecccccce
Q 016458          128 ----------------------------------------------GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV  161 (389)
Q Consensus       128 ----------------------------------------------~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v  161 (389)
                                                                    +..+.+++|.+..+.       ......-....=
T Consensus       153 sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s-------~l~tk~lfk~~~  225 (561)
T COG5354         153 SLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS-------VLVTKNLFKVSG  225 (561)
T ss_pred             eEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC-------eeeeeeeEeecc
Confidence                                                          223333444333211       011111111122


Q ss_pred             EEEEEeeCCCcEEEEee----------CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEE-eeCCCc
Q 016458          162 SCCQYVPDEDTHLITSS----------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS-GSCDST  230 (389)
Q Consensus       162 ~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~  230 (389)
                      ..+.|.+.|..+++-.-          ....+.++++........      ....++|...+|.|....+.++ |..+..
T Consensus       226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~------~~~~~pVhdf~W~p~S~~F~vi~g~~pa~  299 (561)
T COG5354         226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE------KDLKDPVHDFTWEPLSSRFAVISGYMPAS  299 (561)
T ss_pred             cEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccccee------ccccccceeeeecccCCceeEEecccccc
Confidence            34677777743333221          124577777763322221      2557899999999954444333 357889


Q ss_pred             eEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC---CeEEEEECCCCceee-EeeccCCCCCCCCeeEEEeC
Q 016458          231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQ-VYYQQHGENEIPHVTSIAFS  306 (389)
Q Consensus       231 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~-~~~~~~~~~~~~~i~~~~~~  306 (389)
                      +.++|++..   + .+......=+.+.|+|.+++++.++-|   |.+.+||........ .+.. .      ..+-+.|+
T Consensus       300 ~s~~~lr~N---l-~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~-~------n~s~~~ws  368 (561)
T COG5354         300 VSVFDLRGN---L-RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG-L------NTSYCDWS  368 (561)
T ss_pred             eeecccccc---e-EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec-C------CceEeecc
Confidence            999999854   2 233344555778999999999998765   679999987654444 2222 1      14667899


Q ss_pred             CCCCEEEEEe------cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458          307 ISGRLLFAGY------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (389)
Q Consensus       307 ~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  365 (389)
                      ||++++.+..      .|..+.|||+......            ..+.+.|.|.|++..+.+.+.
T Consensus       369 pd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f------------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         369 PDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF------------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             CCceEEEecCCCcccccCcceEEEEecCchhh------------hhhhccccCCcccceeeccCC
Confidence            9999888764      3678999998543322            345566777666666655554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=3.3e-13  Score=119.28  Aligned_cols=270  Identities=13%  Similarity=0.204  Sum_probs=188.3

Q ss_pred             CcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC--Cc
Q 016458           55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD--SV  132 (389)
Q Consensus        55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~  132 (389)
                      ..++..++|+.|+..-+|++|+-+.+.|+.|+..|.|++|++.+|........|.++|+.+.-+.+|..+++.+.-  -.
T Consensus      1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence            3567778899999999999999999999999999999999999999999999999999999999999888776543  35


Q ss_pred             EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (389)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  212 (389)
                      ..+|+.....      .....+    ..-.++.|+... ..-+.|+......+||+.++....++.... ......-.+.
T Consensus      1169 saLW~~~s~~------~~~Hsf----~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~-~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1169 SALWDASSTG------GPRHSF----DEDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDT-VTSSYSNNLA 1236 (1516)
T ss_pred             HHHhcccccc------Cccccc----cccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcc-hhhhhhcccc
Confidence            7899987621      122222    234577888764 445556666778999999998776642211 1122233678


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC
Q 016458          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH  292 (389)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  292 (389)
                      .|+| ...+++   .||  .+||.+.. +.++.+...... -.-.|+|+|..++..+.     |||+++.+.+...+...
T Consensus      1237 ~FsP-~D~LIl---ndG--vLWDvR~~-~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld 1303 (1516)
T KOG1832|consen 1237 HFSP-CDTLIL---NDG--VLWDVRIP-EAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD 1303 (1516)
T ss_pred             ccCC-CcceEe---eCc--eeeeeccH-HHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc
Confidence            8998 666665   455  58999987 667666544422 23469999999988775     89999988877664432


Q ss_pred             CCCCCCCeeEEEeCCCCCEEEEEec--C---------------CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458          293 GENEIPHVTSIAFSISGRLLFAGYS--N---------------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (389)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~--d---------------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (389)
                             -+.+.|+..|..+++.-.  |               ...+-+|...-..+.++     .-.-+|..++-+|..
T Consensus      1304 -------qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi-----~v~R~~~Dlct~~~D 1371 (1516)
T KOG1832|consen 1304 -------QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATI-----PVDRCLLDLCTEPTD 1371 (1516)
T ss_pred             -------ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceee-----ecccchhhhhcCCcc
Confidence                   367889999987765431  0               12233343334444444     123356666666666


Q ss_pred             CeEEee
Q 016458          356 SALCTG  361 (389)
Q Consensus       356 ~~l~~~  361 (389)
                      .+|..-
T Consensus      1372 ~~l~vI 1377 (1516)
T KOG1832|consen 1372 SFLGVI 1377 (1516)
T ss_pred             ceEEEE
Confidence            666553

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=8.3e-10  Score=96.88  Aligned_cols=217  Identities=13%  Similarity=0.124  Sum_probs=151.2

Q ss_pred             ccCCCcceeeeecccccCcEEEEEEcCCC------------CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEEC
Q 016458           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSER------------NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS  118 (389)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~------------~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~  118 (389)
                      ..+....+.+.++..|...|+.+.|.|..            -+||++...|.|.+||...+..+..+..+..++..++|-
T Consensus        39 VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~  118 (1062)
T KOG1912|consen   39 VVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWV  118 (1062)
T ss_pred             EEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeee
Confidence            34455677888899999999999998732            257788888999999999999999999999999999997


Q ss_pred             C---CC-cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC---
Q 016458          119 P---TG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG---  191 (389)
Q Consensus       119 ~---~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---  191 (389)
                      +   +. ..|++-.....+.+|+..+++       ..-..........|+.+.|-....+..-+..|.+.+-+.-..   
T Consensus       119 ~~rd~Srd~LlaIh~ss~lvLwntdtG~-------k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep  191 (1062)
T KOG1912|consen  119 PARDDSRDVLLAIHGSSTLVLWNTDTGE-------KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEP  191 (1062)
T ss_pred             eccCcchheeEEecCCcEEEEEEccCCc-------eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCC
Confidence            6   23 567777778899999998866       233333334566778888876677777777787777664321   


Q ss_pred             ----eeEEEecCcccCCCCC----------------C---------eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc
Q 016458          192 ----LRTSVFGGEFQSGHTA----------------D---------VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA  242 (389)
Q Consensus       192 ----~~~~~~~~~~~~~~~~----------------~---------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  242 (389)
                          +....-     ..|.+                .         ...++|+|.-.+.++. .....+.++|++-. .+
T Consensus       192 ~~pgk~~qI~-----sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~prellv~dle~~-~~  264 (1062)
T KOG1912|consen  192 DVPGKEFQIT-----SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-TFPRELLVFDLEYE-CC  264 (1062)
T ss_pred             CCCceeEEEe-----cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-EeccceEEEcchhh-ce
Confidence                111111     11111                0         1234567744444443 45678999999876 66


Q ss_pred             eeEEeeeccceEEEEEecCC--CEEEEEecCCeEEEEECCC
Q 016458          243 VRTFHGHEGDVNTVKFFPDG--NRFGTGSDDGTCRLFDIRT  281 (389)
Q Consensus       243 ~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~  281 (389)
                      +....-..+.+.-+.+-|++  ..|++...||.+.+|--+.
T Consensus       265 l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  265 LAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             eEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            66666556656666776654  5688899999999986543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.36  E-value=4.1e-09  Score=99.83  Aligned_cols=291  Identities=13%  Similarity=0.121  Sum_probs=182.6

Q ss_pred             ccCcEEEEEEcCCCCeEEEEec---C---CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC---CCcEEEE
Q 016458           66 HAGKVYSLDWTSERNRIVSASQ---D---GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIF  136 (389)
Q Consensus        66 h~~~v~~~~~~~~~~~l~~~~~---d---g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw  136 (389)
                      +.+.-..++|-.||.++|+.+.   +   ..++||+-+ |....+-..-.+--.+++|.|.|+++|+...   ...|.+|
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence            5556778999999999998774   2   579999954 6554444433344467899999999998754   3567777


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  216 (389)
                      .-+.-+...    ....+......|..+.|++++ ..|+....|. |.+|-..+..-......  .......+..+.|+|
T Consensus       287 ErNGLrhge----F~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqei--~~~~~~~~~~~~Wdp  358 (928)
T PF04762_consen  287 ERNGLRHGE----FTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQEI--RFSSSESVNFVKWDP  358 (928)
T ss_pred             ecCCcEeee----EecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEEE--EccCCCCCCceEECC
Confidence            766533211    111223455678999999998 6777766554 99999877643222211  123334455699999


Q ss_pred             CCCcEEEEeeCCCceEEEeCC----CCC-------cceeEE-----------------------eeeccceEEEEEecCC
Q 016458          217 SNSRMFVSGSCDSTARLWDTR----VAS-------RAVRTF-----------------------HGHEGDVNTVKFFPDG  262 (389)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~----~~~-------~~~~~~-----------------------~~~~~~i~~~~~~~~~  262 (389)
                      .+...|...+.+|.+..++..    ...       ..+..+                       -....+|.+++|++++
T Consensus       359 e~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~  438 (928)
T PF04762_consen  359 EKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN  438 (928)
T ss_pred             CCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC
Confidence            888888888877777665532    100       001111                       1134679999999998


Q ss_pred             CEEEEEecCCeEEEEECCCCcee--------eEeec-----cCCCCCCCCeeEEEeCCCCCEEEEEecC---CcEEEEEc
Q 016458          263 NRFGTGSDDGTCRLFDIRTGHQL--------QVYYQ-----QHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDT  326 (389)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~--------~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~  326 (389)
                      ..+++...||.|.+|........        ..+..     .........+..++|..+..+++....+   ..+.+++.
T Consensus       439 ~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  518 (928)
T PF04762_consen  439 SRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDI  518 (928)
T ss_pred             CeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEe
Confidence            88999999999999985443211        11111     0111123347888888877766666554   57888887


Q ss_pred             ccce---EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          327 LLAK---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       327 ~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      ....   .....    ..-.+.+..+...++...++.-..||.+..
T Consensus       519 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~  560 (928)
T PF04762_consen  519 DDSENSASVESS----TEVDGVVLIISSSPDSGSLYIQTNDGKVFQ  560 (928)
T ss_pred             ccCCCceeEEEE----eccCceEEEEeeCCCCcEEEEEECCCEEEE
Confidence            4332   22222    233455666666665554666677888765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.35  E-value=1.7e-10  Score=90.38  Aligned_cols=256  Identities=18%  Similarity=0.300  Sum_probs=166.2

Q ss_pred             CCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccc------------cceEEEEEeeC-CCcEEE
Q 016458          109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK------------GYVSCCQYVPD-EDTHLI  175 (389)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~-~~~~l~  175 (389)
                      ...|+++.|...|.++++|...|.|.+|.-+...  ..+......+++|.            ..|..+.|..+ +...++
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~--~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSY--GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeeccccc--ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            3568999999999999999999999999876533  11222333344443            35677888765 446788


Q ss_pred             EeeCCCeEEEEeCCCCee-------------------------------------EEEecC-cccCCCCCCeeEEEeeCC
Q 016458          176 TSSGDQTCVLWDITTGLR-------------------------------------TSVFGG-EFQSGHTADVLSVSISGS  217 (389)
Q Consensus       176 ~~~~dg~i~iwd~~~~~~-------------------------------------~~~~~~-~~~~~~~~~v~~~~~~~~  217 (389)
                      ..+.|.+|++|.+.....                                     +...+. .....|...+.++.++. 
T Consensus       104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-  182 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-  182 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-
Confidence            889999999998764310                                     000000 01245667788888886 


Q ss_pred             CCcEEEEeeCCCceEEEeCCCCCccee--EEeeec-----cceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeE--
Q 016458          218 NSRMFVSGSCDSTARLWDTRVASRAVR--TFHGHE-----GDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQV--  287 (389)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~-----~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~--  287 (389)
                      +...+++ ..|-.|.+|++........  .+++|.     .-|++..|+| ....+.-.+..|.|++-|++.......  
T Consensus       183 D~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~  261 (460)
T COG5170         183 DKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK  261 (460)
T ss_pred             chheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence            5555555 4578899999876544333  334443     3488899999 455677777889999999985322111  


Q ss_pred             --e--eccC-----CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc-eEEEeecCcC--------CCCCCCe---
Q 016458          288 --Y--YQQH-----GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-KVVLNLGSLQ--------NSHEGRI---  346 (389)
Q Consensus       288 --~--~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~--------~~~~~~v---  346 (389)
                        +  ....     -..-...|..+.|+++|+++++-+.- +|.+||.+.. .++.++....        ......|   
T Consensus       262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk  340 (460)
T COG5170         262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK  340 (460)
T ss_pred             hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence              0  0000     00112358899999999999987654 8999998753 4555552100        0011222   


Q ss_pred             eEEEECCCCCeEEeeeCCCeeEE
Q 016458          347 TCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       347 ~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      ..+.|+.|.+.+.+|+..+..-+
T Consensus       341 FeisfSgd~~~v~sgsy~NNfgi  363 (460)
T COG5170         341 FEISFSGDDKHVLSGSYSNNFGI  363 (460)
T ss_pred             EEEEecCCcccccccccccceee
Confidence            35778888889999988887777

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.32  E-value=3.7e-09  Score=87.79  Aligned_cols=224  Identities=15%  Similarity=0.159  Sum_probs=153.5

Q ss_pred             ECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCc--ceeee--cccccceEEEE-EeeCCCcEEEEeeCCCeEEEEeCCCC
Q 016458          117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLP--VSRML--SGHKGYVSCCQ-YVPDEDTHLITSSGDQTCVLWDITTG  191 (389)
Q Consensus       117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~--~~~~~--~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~  191 (389)
                      .+.+|+.++.. ..|.|.+||..+........-  ..+..  .....+..-+. |++..+.+++..+. |...+.+...+
T Consensus       274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~  351 (668)
T COG4946         274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG  351 (668)
T ss_pred             cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence            35577777654 467899999887542211111  11000  00011111111 33333456666655 67778777666


Q ss_pred             eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC-ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec
Q 016458          192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD  270 (389)
Q Consensus       192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  270 (389)
                      ..+..       ++...|.-..+.. +++-++.|..|| .+-+||.+.+  .+..+...-+.|.++..+|+|++++++..
T Consensus       352 ~~iqv-------~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~--e~kr~e~~lg~I~av~vs~dGK~~vvaNd  421 (668)
T COG4946         352 YSIQV-------GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGG--EVKRIEKDLGNIEAVKVSPDGKKVVVAND  421 (668)
T ss_pred             eeEEc-------CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCc--eEEEeeCCccceEEEEEcCCCcEEEEEcC
Confidence            65543       5666787777776 556788899999 8999999865  45566667788999999999999999999


Q ss_pred             CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC----cEEEEEcccceEEEeecCcCCCCCCCe
Q 016458          271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----DCYVWDTLLAKVVLNLGSLQNSHEGRI  346 (389)
Q Consensus       271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~v  346 (389)
                      ...|.+.|+.++.....-.....     -|+.+.|+|+++++|-+--+|    .|+++|+..++....-.     ..+.=
T Consensus       422 r~el~vididngnv~~idkS~~~-----lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-----~ta~D  491 (668)
T COG4946         422 RFELWVIDIDNGNVRLIDKSEYG-----LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-----PTAYD  491 (668)
T ss_pred             ceEEEEEEecCCCeeEecccccc-----eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-----Ccccc
Confidence            99999999999876655443333     399999999999999887665    68999999888766542     22233


Q ss_pred             eEEEECCCCCeEEeee
Q 016458          347 TCLGLSADGSALCTGS  362 (389)
Q Consensus       347 ~~~~~~~~~~~l~~~~  362 (389)
                      .+-+|.||+++|.--+
T Consensus       492 fsPaFD~d~ryLYfLs  507 (668)
T COG4946         492 FSPAFDPDGRYLYFLS  507 (668)
T ss_pred             cCcccCCCCcEEEEEe
Confidence            5568999999886654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=1.1e-09  Score=88.73  Aligned_cols=262  Identities=12%  Similarity=0.104  Sum_probs=150.0

Q ss_pred             EEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc-EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC
Q 016458           91 LIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD  169 (389)
Q Consensus        91 v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  169 (389)
                      |++.+..+.+....+..+...|..++|+|..+ ++..++.+..|+|.|+++..       ....+..+ ..+++++|.-+
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-------~vssy~a~-~~~wSC~wDld  246 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-------VVSSYIAY-NQIWSCCWDLD  246 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-------eeeheecc-CCceeeeeccC
Confidence            55555555555556667778899999999777 78889999999999999854       45555555 78999999999


Q ss_pred             CCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC-----CCcEEEEeeCCCceEEEeCCCCCcce-
Q 016458          170 EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-----NSRMFVSGSCDSTARLWDTRVASRAV-  243 (389)
Q Consensus       170 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~-  243 (389)
                      ..+++++|...|.|.+||++..+........  .....+|..++..+.     .+.+++....+  +..|++....... 
T Consensus       247 e~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a--~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p  322 (463)
T KOG1645|consen  247 ERHVIYAGLQNGMVLVYDMRQPEGPLMELVA--NVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLP  322 (463)
T ss_pred             CcceeEEeccCceEEEEEccCCCchHhhhhh--hhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCC
Confidence            8899999999999999999876432221000  122344554444332     23444444432  4556554321111 


Q ss_pred             e-EEeeeccceEEEEEecCCCEE-EEEecCC------eEE-EEECCCCceeeEeeccC-CCCCCC--CeeEEEeCCCCCE
Q 016458          244 R-TFHGHEGDVNTVKFFPDGNRF-GTGSDDG------TCR-LFDIRTGHQLQVYYQQH-GENEIP--HVTSIAFSISGRL  311 (389)
Q Consensus       244 ~-~~~~~~~~i~~~~~~~~~~~l-~~~~~dg------~i~-i~d~~~~~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~  311 (389)
                      . .-.+..+...++.+++-.+.+ ++.-.+.      .|- --|-.+|..+....... +.....  .-..+.-.++.++
T Consensus       323 ~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~  402 (463)
T KOG1645|consen  323 CVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNY  402 (463)
T ss_pred             cccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccE
Confidence            1 111123445555565533433 3332211      011 11222333322221111 000000  0111222345555


Q ss_pred             EE-EEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC-CCCeEEeeeCCCeeEE
Q 016458          312 LF-AGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKV  369 (389)
Q Consensus       312 l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i  369 (389)
                      ++ +|...+.+.+||..+.+.+.++.     .+.+|.+++... ++.-++..-.|..++|
T Consensus       403 iv~~gd~tn~lil~D~~s~evvQ~l~-----~~epv~Dicp~~~n~~syLa~LTd~~v~I  457 (463)
T KOG1645|consen  403 IVVVGDSTNELILQDPHSFEVVQTLA-----LSEPVLDICPNDTNGSSYLALLTDDRVHI  457 (463)
T ss_pred             EEEecCCcceeEEeccchhheeeecc-----cCcceeecceeecCCcchhhheecceEEE
Confidence            54 45566789999999999999883     447888887654 3443344445677888

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.32  E-value=2.1e-08  Score=81.65  Aligned_cols=221  Identities=20%  Similarity=0.227  Sum_probs=143.5

Q ss_pred             EEEEcC-CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEEC-CCCcEEEEecCCCcEEEEeCCCCCCCCCCCc
Q 016458           72 SLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS-PTGQSVACGGLDSVCSIFNLNSPTDKDGNLP  149 (389)
Q Consensus        72 ~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  149 (389)
                      +.+|.+ ++.++++-...+.|..|+..++.... +....  ...+++. +++.++++ ...+ +.++|..+++     ..
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~-~~~~-~~~~d~~~g~-----~~   73 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVA-DSGG-IAVVDPDTGK-----VT   73 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEE-ETTC-EEEEETTTTE-----EE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEE-EcCc-eEEEecCCCc-----EE
Confidence            578888 67777777778999999987765433 33333  6777777 56555444 4444 5666877643     11


Q ss_pred             ceeee--cc-cccceEEEEEeeCCCcEEEEeeCC--------CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458          150 VSRML--SG-HKGYVSCCQYVPDEDTHLITSSGD--------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN  218 (389)
Q Consensus       150 ~~~~~--~~-~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  218 (389)
                      .....  .. .....+++++.++| ++.++....        |.|..++.. ++.....      ..-.....++|+|++
T Consensus        74 ~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~------~~~~~pNGi~~s~dg  145 (246)
T PF08450_consen   74 VLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA------DGLGFPNGIAFSPDG  145 (246)
T ss_dssp             EEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE------EEESSEEEEEEETTS
T ss_pred             EEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEEEEe------cCcccccceEECCcc
Confidence            22222  11 34678899999998 555554433        668888877 5544433      234557899999944


Q ss_pred             CcEEEEeeCCCceEEEeCCCCCcce---eEE---eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC
Q 016458          219 SRMFVSGSCDSTARLWDTRVASRAV---RTF---HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH  292 (389)
Q Consensus       219 ~~~l~~~~~dg~i~i~d~~~~~~~~---~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  292 (389)
                      ..++++-+..+.|..+++......+   ..+   ....+..-.+++..+|++.++....+.|.++|.. ++.+..+....
T Consensus       146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~  224 (246)
T PF08450_consen  146 KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV  224 (246)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS
T ss_pred             hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC
Confidence            4455677778899999987543311   122   1112237789999999988888889999999987 88887776653


Q ss_pred             CCCCCCCeeEEEe-CCCCCEEEEEe
Q 016458          293 GENEIPHVTSIAF-SISGRLLFAGY  316 (389)
Q Consensus       293 ~~~~~~~i~~~~~-~~~~~~l~~~~  316 (389)
                      .     .+++++| -++.+.|++.+
T Consensus       225 ~-----~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  225 P-----RPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             S-----SEEEEEEESTTSSEEEEEE
T ss_pred             C-----CEEEEEEECCCCCEEEEEe
Confidence            2     3899999 46767666654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.31  E-value=8.5e-09  Score=80.41  Aligned_cols=241  Identities=15%  Similarity=0.169  Sum_probs=135.4

Q ss_pred             EEEEcCCCCeEEEEecCCcEEEEeCCCC--CeeEEEeeCC---CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCC
Q 016458           72 SLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPC---AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG  146 (389)
Q Consensus        72 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  146 (389)
                      .++.+++|+.||.- .|..|.|=..++.  ..+...+.+.   ..=..++|+||+..||.+...|+|++||+.....-  
T Consensus         2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf--   78 (282)
T PF15492_consen    2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF--   78 (282)
T ss_pred             ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE--
Confidence            35677889887765 5567777654432  2223333322   34578999999999999999999999999863210  


Q ss_pred             CCcceeee-cccccceEEEEEeeCC-----CcEEEEeeCCCeEEEEeCCCC-----eeEEEecCcccCCCCCCeeEEEee
Q 016458          147 NLPVSRML-SGHKGYVSCCQYVPDE-----DTHLITSSGDQTCVLWDITTG-----LRTSVFGGEFQSGHTADVLSVSIS  215 (389)
Q Consensus       147 ~~~~~~~~-~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~  215 (389)
                      ..+..... ..-...|..+.|.+..     ...|++-..+|.++-|-+..+     +....+.  +.......|.++.++
T Consensus        79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs--f~~~yp~Gi~~~vy~  156 (282)
T PF15492_consen   79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS--FSSHYPHGINSAVYH  156 (282)
T ss_pred             EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE--ecccCCCceeEEEEc
Confidence            00011111 1123566777776532     235777778888887776322     2223321  123457789999999


Q ss_pred             CCCCcEEEEeeCCCc-eEEEeCCCCCcceeEEeeeccceEEEEEecCCCE--EEEEecCCe------EEEEECCCCceee
Q 016458          216 GSNSRMFVSGSCDST-ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR--FGTGSDDGT------CRLFDIRTGHQLQ  286 (389)
Q Consensus       216 ~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~~~~dg~------i~i~d~~~~~~~~  286 (389)
                      | ..++|++|+.... -....            +....+++-..-.+..+  .++...|+.      ..+|.+-+.+...
T Consensus       157 p-~h~LLlVgG~~~~~~~~s~------------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs  223 (282)
T PF15492_consen  157 P-KHRLLLVGGCEQNQDGMSK------------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS  223 (282)
T ss_pred             C-CCCEEEEeccCCCCCcccc------------ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee
Confidence            9 5566666654322 00000            11111222111111111  111111111      1233322211111


Q ss_pred             EeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458          287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (389)
                      ..     ......|..|..||||..|++...+|.|.+|++.+.+....+
T Consensus       224 ~~-----~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  224 RQ-----GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             cc-----ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            11     112335999999999999999999999999999987777666

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.31  E-value=1.8e-09  Score=82.93  Aligned_cols=244  Identities=11%  Similarity=0.072  Sum_probs=159.8

Q ss_pred             EEEEcC-----CCCeEEEEecCCcEEEEeCCCCCee-EEEeeCCCcEEEEEE-CCCCcEEEEecCCCcEEEEeCCCCCCC
Q 016458           72 SLDWTS-----ERNRIVSASQDGRLIVWNALTSQKT-HAIKLPCAWVMTCAF-SPTGQSVACGGLDSVCSIFNLNSPTDK  144 (389)
Q Consensus        72 ~~~~~~-----~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~vw~~~~~~~~  144 (389)
                      .+.|-|     ...+||.|+.-|...+|...+.+.. .....+...|+-+.= ......+..++.|.++++.+++.+.. 
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~-  150 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN-  150 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc-
Confidence            455555     2348999999999999998765533 233333332222111 11233466677888899988876431 


Q ss_pred             CCCCcceeeeccccc--ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458          145 DGNLPVSRMLSGHKG--YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (389)
Q Consensus       145 ~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  222 (389)
                              ....|..  .+.++.+++++ .++++.+....|..|.+........-.  ......+.-.+..|+. ....+
T Consensus       151 --------~~~~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~--~~a~t~D~gF~~S~s~-~~~~F  218 (344)
T KOG4532|consen  151 --------KFAVHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENI--YEAPTSDHGFYNSFSE-NDLQF  218 (344)
T ss_pred             --------cceeeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeee--EecccCCCceeeeecc-CcceE
Confidence                    1122322  37889999997 789999999999999987653222110  0134455567788887 77899


Q ss_pred             EEeeCCCceEEEeCCCCCcceeE----EeeeccceEEEEEecCCC--EEEEEecCCeEEEEECCCCceeeEeeccCCC--
Q 016458          223 VSGSCDSTARLWDTRVASRAVRT----FHGHEGDVNTVKFFPDGN--RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE--  294 (389)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--  294 (389)
                      +++..||++.|||+|....+...    -..|.+.++.+.|++.|.  +|+..-.-+.+.+.|++++...+.+......  
T Consensus       219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~  298 (344)
T KOG4532|consen  219 AVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVER  298 (344)
T ss_pred             EEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccc
Confidence            99999999999999987544432    234889999999998543  4555555678999999998877766554322  


Q ss_pred             -CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458          295 -NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (389)
Q Consensus       295 -~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (389)
                       .....|....|+.++.-+.+.+.+ .+.=|++.+.
T Consensus       299 ~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr  333 (344)
T KOG4532|consen  299 KHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR  333 (344)
T ss_pred             cccccccccccccCCCcccccccch-hhheeecccc
Confidence             111236777788777776666554 4555665443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.30  E-value=8.2e-08  Score=78.17  Aligned_cols=224  Identities=18%  Similarity=0.190  Sum_probs=144.0

Q ss_pred             EEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEe-eCCCcEEEEeeCCCeEEEEeCCCC
Q 016458          114 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV-PDEDTHLITSSGDQTCVLWDITTG  191 (389)
Q Consensus       114 ~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~  191 (389)
                      +..|.+ ++.++++-...+.|..|+..++.        ....... . ...+.+. +++  .++.+...+ +.++|+.++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~--------~~~~~~~-~-~~G~~~~~~~g--~l~v~~~~~-~~~~d~~~g   70 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE--------VEVIDLP-G-PNGMAFDRPDG--RLYVADSGG-IAVVDPDTG   70 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTE--------EEEEESS-S-EEEEEEECTTS--EEEEEETTC-EEEEETTTT
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCe--------EEEEecC-C-CceEEEEccCC--EEEEEEcCc-eEEEecCCC
Confidence            567888 67777777778999999988743        1112211 2 6677777 543  455555544 455599988


Q ss_pred             eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC--------CceEEEeCCCCCcceeEEeeeccceEEEEEecCCC
Q 016458          192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN  263 (389)
Q Consensus       192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  263 (389)
                      +.................+.+++.| ++++.++....        |.|..++.. . + +......-...+.++|+|+++
T Consensus        71 ~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~-~~~~~~~~~~pNGi~~s~dg~  146 (246)
T PF08450_consen   71 KVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-G-K-VTVVADGLGFPNGIAFSPDGK  146 (246)
T ss_dssp             EEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-S-E-EEEEEEEESSEEEEEEETTSS
T ss_pred             cEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-C-e-EEEEecCcccccceEECCcch
Confidence            6655543211111456688999999 77777765543        457777766 2 3 333333455678999999998


Q ss_pred             EEE-EEecCCeEEEEECCCCce-e---eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCc
Q 016458          264 RFG-TGSDDGTCRLFDIRTGHQ-L---QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL  338 (389)
Q Consensus       264 ~l~-~~~~dg~i~i~d~~~~~~-~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  338 (389)
                      .|+ +-+..+.|..|++..... +   ..+...  .......-.+++..+|++.++....+.|.++|.. ++.+..+.  
T Consensus       147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~--  221 (246)
T PF08450_consen  147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDF--PGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE--  221 (246)
T ss_dssp             EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE---SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE--
T ss_pred             heeecccccceeEEEeccccccceeeeeeEEEc--CCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc--
Confidence            775 556788899999864332 1   222111  1111236789999999988888889999999987 88887774  


Q ss_pred             CCCCCCCeeEEEE-CCCCCeEEee
Q 016458          339 QNSHEGRITCLGL-SADGSALCTG  361 (389)
Q Consensus       339 ~~~~~~~v~~~~~-~~~~~~l~~~  361 (389)
                        .....+++++| -++.+.|+..
T Consensus       222 --~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  222 --LPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             ---SSSSEEEEEEESTTSSEEEEE
T ss_pred             --CCCCCEEEEEEECCCCCEEEEE
Confidence              33458999999 4665555543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=1.4e-09  Score=91.88  Aligned_cols=246  Identities=15%  Similarity=0.156  Sum_probs=141.4

Q ss_pred             cCCCcceeeeecccccCcEEEEEEcCCCCeEEEEec-----------CCcEEEEeCCCCCeeEEEeeCCC--cE-EEEEE
Q 016458           52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ-----------DGRLIVWNALTSQKTHAIKLPCA--WV-MTCAF  117 (389)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~-----------dg~v~iw~~~~~~~~~~~~~~~~--~v-~~~~~  117 (389)
                      |.-.....++.|. |.+ |.-+.|||..+||+|-+.           ...++|||+.+|.....+....+  .+ .-..|
T Consensus       236 WGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frW  313 (698)
T KOG2314|consen  236 WGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRW  313 (698)
T ss_pred             ecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEe
Confidence            3333333333332 554 888999999999998652           25799999999999988876332  22 34689


Q ss_pred             CCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCC--------------------------
Q 016458          118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED--------------------------  171 (389)
Q Consensus       118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------------  171 (389)
                      |.|++++|.-..+ .|.||+...-..       ...-.-.-..|....|+|.+.                          
T Consensus       314 S~DdKy~Arm~~~-sisIyEtpsf~l-------ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~  385 (698)
T KOG2314|consen  314 SHDDKYFARMTGN-SISIYETPSFML-------LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE  385 (698)
T ss_pred             ccCCceeEEeccc-eEEEEecCceee-------ecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce
Confidence            9999999987664 588888665210       000000112233333333320                          


Q ss_pred             --------------------cEEEEe----------eCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcE
Q 016458          172 --------------------THLITS----------SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM  221 (389)
Q Consensus       172 --------------------~~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  221 (389)
                                          .+|+.-          +.-..+-|+.++........     ......|...+|-|.++++
T Consensus       386 iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~-----velke~vi~FaWEP~gdkF  460 (698)
T KOG2314|consen  386 IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV-----VELKESVIAFAWEPHGDKF  460 (698)
T ss_pred             eeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee-----eecchheeeeeeccCCCeE
Confidence                                111110          00001122222211111110     1334567888999944444


Q ss_pred             EEEeeC--CCceEEEeCCCC-C--cceeEEeeeccceEEEEEecCCCEEEEEe---cCCeEEEEECCCCceeeEeeccCC
Q 016458          222 FVSGSC--DSTARLWDTRVA-S--RAVRTFHGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQLQVYYQQHG  293 (389)
Q Consensus       222 l~~~~~--dg~i~i~d~~~~-~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~  293 (389)
                      .+..+.  ..++.+|.+.+. .  ..+..+.  ....+.+.|+|.|++++.+.   ..|.+.++|.........-...+.
T Consensus       461 ~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~  538 (698)
T KOG2314|consen  461 AVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF  538 (698)
T ss_pred             EEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc
Confidence            333333  357888887732 1  2233333  24568899999999988765   468899999875333222222222


Q ss_pred             CCCCCCeeEEEeCCCCCEEEEEecCC
Q 016458          294 ENEIPHVTSIAFSISGRLLFAGYSNG  319 (389)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (389)
                           ..+.+.|.|.|+|++++++-+
T Consensus       539 -----~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  539 -----AATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             -----ccccceECCCCCEEEEeeehh
Confidence                 268899999999999987643

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.29  E-value=7.6e-11  Score=95.35  Aligned_cols=166  Identities=17%  Similarity=0.228  Sum_probs=116.3

Q ss_pred             EEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEE---eeCCCeEEEEeC
Q 016458          112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT---SSGDQTCVLWDI  188 (389)
Q Consensus       112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~---~~~dg~i~iwd~  188 (389)
                      ...+..++.++++|++..+....++++.....   ...+..... -....+.+.|..+. .....   ++....+.+|..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~---~~kl~~~~~-v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK---GAKLLDVSC-VPKRPTAISFIRED-TSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCC---cceeeeEee-cccCcceeeeeecc-ceEEEEeecCCceeeeeecc
Confidence            45566788999999999888888888876442   111222221 12233444555443 23333   344455556665


Q ss_pred             CCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEE
Q 016458          189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG  268 (389)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  268 (389)
                      ..+.....      .+|-+.++.++++| ++.+++++..|..|++-........-.-..+|..-|..++.-++ ..|+++
T Consensus       140 ~~~~~~~~------lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~  211 (390)
T KOG3914|consen  140 DSGRCEPI------LGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSG  211 (390)
T ss_pred             cccCcchh------hhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeec
Confidence            55544444      48999999999999 78999999999999998877652333334579999999999865 459999


Q ss_pred             ecCCeEEEEECCCCceeeEeec
Q 016458          269 SDDGTCRLFDIRTGHQLQVYYQ  290 (389)
Q Consensus       269 ~~dg~i~i~d~~~~~~~~~~~~  290 (389)
                      +.|++|++||+.+++.+..+..
T Consensus       212 sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  212 SGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             CCCCcEEEEecccCCcccccch
Confidence            9999999999999998866643

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.29  E-value=4.6e-09  Score=81.85  Aligned_cols=206  Identities=13%  Similarity=0.140  Sum_probs=120.6

Q ss_pred             EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeC-------CCcEEEEEECCC------CcEEEEecCCCcEEEE
Q 016458           70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP-------CAWVMTCAFSPT------GQSVACGGLDSVCSIF  136 (389)
Q Consensus        70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~~------~~~l~~~~~dg~i~vw  136 (389)
                      =..++||||+.+||.+...|+|++||+.. ..+..+...       ...|..+.|.+.      ...|++-..+|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            45799999999999999999999999865 333343322       145666767542      2356777788888888


Q ss_pred             eCCCCCCCCCCCcceeeecc-cccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458          137 NLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  215 (389)
                      -+..+............+.. +...|.++.|+|.. ++|+.|+....      +.+.  .       ......+++-...
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~------~~~~--s-------~a~~~GLtaWRiL  188 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQN------QDGM--S-------KASSCGLTAWRIL  188 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCC------CCcc--c-------cccccCceEEEEc
Confidence            87543222111112222322 46789999999986 56666654322      0000  0       1122233333332


Q ss_pred             CCCCcEEEEeeC-CCc------eEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEe
Q 016458          216 GSNSRMFVSGSC-DST------ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY  288 (389)
Q Consensus       216 ~~~~~~l~~~~~-dg~------i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  288 (389)
                      .....+..+... |+.      ..+|.+-+. ............|..+..||||..|++...+|.|.+|++.+-+....+
T Consensus       189 ~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~-~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  189 SDSPYYKQVTSSEDDITASSKRRGLLRIPSF-KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             CCCCcEEEccccCccccccccccceeeccce-eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            222222211111 111      122222211 111111224567999999999999999999999999999988877776


Q ss_pred             eccCC
Q 016458          289 YQQHG  293 (389)
Q Consensus       289 ~~~~~  293 (389)
                      .....
T Consensus       268 ~~~eq  272 (282)
T PF15492_consen  268 KQDEQ  272 (282)
T ss_pred             chhhC
Confidence            65443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=1.8e-11  Score=96.94  Aligned_cols=176  Identities=13%  Similarity=0.214  Sum_probs=127.3

Q ss_pred             EEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCC----C
Q 016458          165 QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA----S  240 (389)
Q Consensus       165 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~  240 (389)
                      +|+-+-..+-++.+.+-.|-+-|++++.....       ...+.|.++.|.. .++++..|+..|.|..+|+|..    .
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~qsf-------~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~  289 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQSF-------QSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNG  289 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeeccccccc-------ccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCC
Confidence            45433222336667778888999988765432       3567899999987 7889999999999999999875    2


Q ss_pred             cceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCce---eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458          241 RAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (389)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (389)
                      .+...+. |...|+++..-. ++++|++.+.+|+|++||++.-++   +..+..+..   ...-.-+-..+....+++++
T Consensus       290 ~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN---~~a~l~~~v~~eeg~I~s~G  365 (425)
T KOG2695|consen  290 WCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN---LSAYLPAHVKEEEGSIFSVG  365 (425)
T ss_pred             cceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc---cccccccccccccceEEEcc
Confidence            3444444 888999988766 788999999999999999998777   444433221   11122334556677888999


Q ss_pred             cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEEC
Q 016458          317 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  352 (389)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  352 (389)
                      .|...+||.++.+..+.+++......+..+.+++|.
T Consensus       366 dDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  366 DDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             CeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            999999999999999999864433444455566654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=9.3e-09  Score=89.49  Aligned_cols=213  Identities=10%  Similarity=0.003  Sum_probs=126.3

Q ss_pred             cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcE-EEEecC---CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEE
Q 016458           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS-VACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ  165 (389)
Q Consensus        90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  165 (389)
                      .|.+-|.... ....+.... ....-.|+|+|+. ++..+.   +..|.++|+.++.        ...+....+......
T Consensus       170 ~l~~~d~dg~-~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~--------~~~lt~~~g~~~~~~  239 (419)
T PRK04043        170 NIVLADYTLT-YQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK--------KEKIASSQGMLVVSD  239 (419)
T ss_pred             eEEEECCCCC-ceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc--------EEEEecCCCcEEeeE
Confidence            4444454333 233333333 6788999999985 554333   3568888887654        222223445556678


Q ss_pred             EeeCCCcEEEEeeCC--CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC--ceEEEeCCCCCc
Q 016458          166 YVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASR  241 (389)
Q Consensus       166 ~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~  241 (389)
                      |+|+|..++++.+.+  ..|.++|+.++......      .+........|+|++..++++....+  .|++.|+..+ .
T Consensus       240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g-~  312 (419)
T PRK04043        240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG-S  312 (419)
T ss_pred             ECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc------cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC-C
Confidence            999997666665544  56888898877644332      22223345679994444555544444  5777777655 2


Q ss_pred             ceeEEeeeccceEEEEEecCCCEEEEEecC---------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEE
Q 016458          242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL  312 (389)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (389)
                      . ..+.....  ....|+|+|++|+..+..         ..|.+.|+.++... .+.... .     .....|+|||+.|
T Consensus       313 ~-~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~-~-----~~~p~~SPDG~~I  382 (419)
T PRK04043        313 V-EQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANG-V-----NQFPRFSSDGGSI  382 (419)
T ss_pred             e-EeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCC-C-----cCCeEECCCCCEE
Confidence            2 22221111  124899999998877653         36888898877543 332211 1     2357899999987


Q ss_pred             EEEecCC---cEEEEEcccc
Q 016458          313 FAGYSNG---DCYVWDTLLA  329 (389)
Q Consensus       313 ~~~~~dg---~i~i~d~~~~  329 (389)
                      +....++   .+.+.++...
T Consensus       383 ~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        383 MFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEEEccCCcEEEEEEecCCC
Confidence            7665432   3666676443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.27  E-value=1e-08  Score=89.57  Aligned_cols=273  Identities=14%  Similarity=0.078  Sum_probs=162.7

Q ss_pred             CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc-E-E-----EEEECC--CCcEEEEecCCCcEEEEeCCCCCCCCCCC
Q 016458           78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-V-M-----TCAFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNL  148 (389)
Q Consensus        78 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-v-~-----~~~~~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  148 (389)
                      .+..+++++.+|.+.-+|..+|+.+......... . .     .+.-.|  .+..++.++.+|.+.-+|.++++..    
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~----  143 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVA----  143 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCc----
Confidence            3558888888899999999999988776543310 0 0     000011  3566778888999999999876521    


Q ss_pred             cceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC
Q 016458          149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  228 (389)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  228 (389)
                       ......   +.+.+--...+  ..++.++.++.|..+|..+++..................+....  + ..++.++.+
T Consensus       144 -W~~~~~---~~~~ssP~v~~--~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~-~~v~~~~~~  214 (394)
T PRK11138        144 -WQTKVA---GEALSRPVVSD--GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--F-GGAIVGGDN  214 (394)
T ss_pred             -ccccCC---CceecCCEEEC--CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--C-CEEEEEcCC
Confidence             111111   11111111112  35777888999999999999998877422100000000111111  2 346667788


Q ss_pred             CceEEEeCCCCCcceeEEeeec----c---ceEEEEEec--CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458          229 STARLWDTRVASRAVRTFHGHE----G---DVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (389)
Q Consensus       229 g~i~i~d~~~~~~~~~~~~~~~----~---~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (389)
                      |.+..+|..++ +..-......    .   ....+..+|  .+..+++++.+|.+..+|..+++.+.......       
T Consensus       215 g~v~a~d~~~G-~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-------  286 (394)
T PRK11138        215 GRVSAVLMEQG-QLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-------  286 (394)
T ss_pred             CEEEEEEccCC-hhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-------
Confidence            99999998876 3322221100    0   011111222  35567778889999999999998766543211       


Q ss_pred             eeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      ...+.  ..+..+++++.+|.+..+|..+++.+......  .+ ....+...  .+.+|+.++.||.+.+    .|..+|
T Consensus       287 ~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~-~~~~sp~v--~~g~l~v~~~~G~l~~----ld~~tG  355 (394)
T PRK11138        287 VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL--LH-RLLTAPVL--YNGYLVVGDSEGYLHW----INREDG  355 (394)
T ss_pred             ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc--CC-CcccCCEE--ECCEEEEEeCCCEEEE----EECCCC
Confidence            11222  24667888889999999999999887755321  11 11122222  2457788899999998    888888


Q ss_pred             ccc
Q 016458          380 ALS  382 (389)
Q Consensus       380 ~~~  382 (389)
                      ++.
T Consensus       356 ~~~  358 (394)
T PRK11138        356 RFV  358 (394)
T ss_pred             CEE
Confidence            764

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.25  E-value=1.5e-10  Score=88.30  Aligned_cols=166  Identities=17%  Similarity=0.168  Sum_probs=109.4

Q ss_pred             ecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee-EEEeeCCCcEEEEEECCCCcEEEEecC-----CCcEEE
Q 016458           62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-HAIKLPCAWVMTCAFSPTGQSVACGGL-----DSVCSI  135 (389)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~v  135 (389)
                      .+..|+++=.+-+.+-.++.++++..||.+.+++.+.-..+ ..+......-.+.++...++.+.++..     -+..+.
T Consensus        84 ~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a  163 (319)
T KOG4714|consen   84 VLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYA  163 (319)
T ss_pred             eeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceee
Confidence            34456655555555556778999999999999987652111 111111111222233334555554421     234566


Q ss_pred             EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (389)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  215 (389)
                      |+++..+.      ...... ....|.+++-+|...+++++|+.||.+-+||.++......+    ...|..++..+.|+
T Consensus       164 ~~~~p~~t------~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~----l~ahk~~i~eV~FH  232 (319)
T KOG4714|consen  164 NTLDPIKT------LIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL----LKAHKAEIWEVHFH  232 (319)
T ss_pred             eccccccc------cccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH----HHHhhhhhhheecc
Confidence            66664221      111111 12338899999987788999999999999999987433332    27899999999999


Q ss_pred             CCCCcEEEEeeCCCceEEEeCCC
Q 016458          216 GSNSRMFVSGSCDSTARLWDTRV  238 (389)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~  238 (389)
                      |.++..|+++++||.+..||..+
T Consensus       233 pk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  233 PKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             CCCchheeEecCCCcEEEEcCCC
Confidence            99999999999999999999874

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=1.8e-08  Score=87.76  Aligned_cols=183  Identities=17%  Similarity=0.190  Sum_probs=118.2

Q ss_pred             ceEEEEEeeCCCcEEEE-eeC--CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC--CceEEE
Q 016458          160 YVSCCQYVPDEDTHLIT-SSG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--STARLW  234 (389)
Q Consensus       160 ~v~~~~~~~~~~~~l~~-~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~  234 (389)
                      ....-.|+|++...++. ...  +..|.++|+.+++.....      ...+......|+|+...++++.+.+  ..|.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  262 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA------SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLY  262 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe------cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence            67788999998643443 332  467999999988766654      2344556678999444555555544  467777


Q ss_pred             eCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec-CC--eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCE
Q 016458          235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL  311 (389)
Q Consensus       235 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  311 (389)
                      |+..+  ....+..+........|+|||+.|+..+. .|  .|.+.|+.+++.......  ..      ....|+|||++
T Consensus       263 dl~~g--~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~------~~~~~SPDG~~  332 (419)
T PRK04043        263 DTNTK--TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK------NNSSVSTYKNY  332 (419)
T ss_pred             ECCCC--cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC------cCceECCCCCE
Confidence            87654  24444444433445689999998877663 23  688888887765433321  11      12489999998


Q ss_pred             EEEEecC---------CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC
Q 016458          312 LFAGYSN---------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  364 (389)
Q Consensus       312 l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  364 (389)
                      |+.....         ..|.+.|+.++... .+.   . . .......|+|||+.|+....+
T Consensus       333 Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT---~-~-~~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        333 IVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLT---A-N-GVNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             EEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECC---C-C-CCcCCeEECCCCCEEEEEEcc
Confidence            8776543         36888898877643 332   1 1 223358899999988776654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=3.3e-10  Score=93.09  Aligned_cols=291  Identities=17%  Similarity=0.154  Sum_probs=195.0

Q ss_pred             cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC---CCeeEEEeeCCCcEEEEEECCCCcEEEEecC-CCcEEEEeCCC
Q 016458           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT---SQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNS  140 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~~~~  140 (389)
                      -|++.|+.+.... .+++.+++.||.++.|.-..   -+.+..+..|...+.+++.+.++.++.+.+. |..++++|+.+
T Consensus         7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            4888888887654 45999999999999997433   1233445567788899999999999999877 99999999987


Q ss_pred             CCCCCCCCcceeeecccccceEEEEEeeCCC--cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDED--THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN  218 (389)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  218 (389)
                      -..     .....+..-.+.+.. ..++...  .+.++.-.+|.+.++|-....+...+..   ..|..+|..+.+++ .
T Consensus        86 ~Dm-----inmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk---klH~sPV~~i~y~q-a  155 (558)
T KOG0882|consen   86 FDM-----INMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK---KLHFSPVKKIRYNQ-A  155 (558)
T ss_pred             cch-----hhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec---ccccCceEEEEeec-c
Confidence            331     111111111222221 1222111  2233444689999999876653322211   57889999999999 7


Q ss_pred             CcEEEEeeCCCceEEEeCCCC-Ccc-------------eeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458          219 SRMFVSGSCDSTARLWDTRVA-SRA-------------VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ  284 (389)
Q Consensus       219 ~~~l~~~~~dg~i~i~d~~~~-~~~-------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  284 (389)
                      ++.+++....|.|.-|..... +.+             +..+........++.|+|++..+.+-+.|..|++++.++++.
T Consensus       156 ~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  156 GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence            888899999999999988731 000             111122345678999999999999999999999999999877


Q ss_pred             eeEeeccCCC----------------------------CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeec
Q 016458          285 LQVYYQQHGE----------------------------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG  336 (389)
Q Consensus       285 ~~~~~~~~~~----------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  336 (389)
                      .+.+......                            .....-+.++|...|++|+-|+-=| |++.++.++.....+.
T Consensus       236 vqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  236 VQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             hhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence            6655322111                            0111346678999999999887765 8999999888877663


Q ss_pred             CcC--------------CCC---------CCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          337 SLQ--------------NSH---------EGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       337 ~~~--------------~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      ...              ..+         ..+.  +.+.+|...++++-....+++
T Consensus       315 k~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~--~~~~~dpt~~c~a~kk~rfyl  368 (558)
T KOG0882|consen  315 KDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL--LEFQKDPTIVCTAFKKNRFYL  368 (558)
T ss_pred             cchhhhhhhHHHHhhhhhccchhhhhhhccCcc--cccCCCCeEEEeeeecceEEE
Confidence            110              011         1122  235567777777777777777

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.22  E-value=4.4e-08  Score=79.54  Aligned_cols=223  Identities=19%  Similarity=0.187  Sum_probs=137.3

Q ss_pred             CCcEEEEeCCCCCeeEEEeeCC--CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEE
Q 016458           88 DGRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ  165 (389)
Q Consensus        88 dg~v~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  165 (389)
                      +|+|..||..+|+.+.......  ....+. ..+++..+++++.++.+..||..+++       ....... ...+....
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~-------~~W~~~~-~~~~~~~~   72 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGK-------VLWRFDL-PGPISGAP   72 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSE-------EEEEEEC-SSCGGSGE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCC-------EEEEeec-ccccccee
Confidence            6889999999999998886522  222211 22356677777899999999998765       2222221 11111112


Q ss_pred             EeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEe-cCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCccee
Q 016458          166 YVPDEDTHLITSSGDQTCVLWDITTGLRTSVF-GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR  244 (389)
Q Consensus       166 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  244 (389)
                      ...+  ..++.++.++.|..+|..+++..... ................+   .++.++++..++.|..+|.+++ +.+.
T Consensus        73 ~~~~--~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG-~~~w  146 (238)
T PF13360_consen   73 VVDG--GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTG-KLLW  146 (238)
T ss_dssp             EEET--TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTT-EEEE
T ss_pred             eecc--cccccccceeeeEecccCCcceeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCCC-cEEE
Confidence            2232  45777778889999999999998874 21110111111222333   3567788888999999999988 5555


Q ss_pred             EEeeeccc----------eEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEE
Q 016458          245 TFHGHEGD----------VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA  314 (389)
Q Consensus       245 ~~~~~~~~----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  314 (389)
                      ........          +..-....++ .++.++.++.+..+|+.+++......  ...     +.. ....++..|++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~-----~~~-~~~~~~~~l~~  217 (238)
T PF13360_consen  147 KYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISG-----IYS-LPSVDGGTLYV  217 (238)
T ss_dssp             EEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS------ECE-CEECCCTEEEE
T ss_pred             EeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCC-----ccC-CceeeCCEEEE
Confidence            55443322          1122222244 77777777764444999998664222  111     222 13467788888


Q ss_pred             EecCCcEEEEEcccceEEEe
Q 016458          315 GYSNGDCYVWDTLLAKVVLN  334 (389)
Q Consensus       315 ~~~dg~i~i~d~~~~~~~~~  334 (389)
                      ++.++.|..||+.+++....
T Consensus       218 ~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  218 TSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EETTTEEEEEETTTTEEEEE
T ss_pred             EeCCCEEEEEECCCCCEEeE
Confidence            88999999999999998764

...

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.20  E-value=8.2e-10  Score=98.60  Aligned_cols=180  Identities=22%  Similarity=0.289  Sum_probs=138.8

Q ss_pred             CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec
Q 016458          171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE  250 (389)
Q Consensus       171 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  250 (389)
                      +..++.|+....+..+|+++.+.....     ....+.|.-+..   +++++.+|...|+|.+-|.++. +.++.+.+|.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-----~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~-~~iht~~aHs  217 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTT-----NVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSF-ETIHTFDAHS  217 (1118)
T ss_pred             Ccceeecchhhheeeeecccceeeeee-----eccCCceEEEEe---cCcEEEeecccceEEeecCCcC-ceeeeeeccc
Confidence            356888888888999999998877766     233334555543   6689999999999999999998 8999999999


Q ss_pred             cceEEEEEecCCCEEEEEec---------CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC-CCEEEEEecCCc
Q 016458          251 GDVNTVKFFPDGNRFGTGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGD  320 (389)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~  320 (389)
                      +.|..+..  .|+.|+++|.         |..|+|||++..+.+..+..+.++      .-+.|.|. ...+++.+..|.
T Consensus       218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P------~flrf~Psl~t~~~V~S~sGq  289 (1118)
T KOG1275|consen  218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP------QFLRFHPSLTTRLAVTSQSGQ  289 (1118)
T ss_pred             cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc------hhhhhcccccceEEEEecccc
Confidence            99977666  6889998875         556899999998777666554432      45667775 347888889999


Q ss_pred             EEEEEcc---cc-eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458          321 CYVWDTL---LA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR  375 (389)
Q Consensus       321 i~i~d~~---~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~  375 (389)
                      ..+-|..   +. .....+    ......+..+.++++|+.++.|..+|.|.+    |.
T Consensus       290 ~q~vd~~~lsNP~~~~~~v----~p~~s~i~~fDiSsn~~alafgd~~g~v~~----wa  340 (1118)
T KOG1275|consen  290 FQFVDTATLSNPPAGVKMV----NPNGSGISAFDISSNGDALAFGDHEGHVNL----WA  340 (1118)
T ss_pred             eeeccccccCCCccceeEE----ccCCCcceeEEecCCCceEEEecccCcEee----ec
Confidence            9999933   32 122222    344556999999999999999999999999    97

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.19  E-value=1.4e-10  Score=101.09  Aligned_cols=216  Identities=16%  Similarity=0.191  Sum_probs=153.6

Q ss_pred             cceeeeecccccCcEEEEEEcCCC-CeEEEEecCCcEEEEeCCCCC-eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcE
Q 016458           56 DLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQ-KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC  133 (389)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  133 (389)
                      .-.....+.||..+|+.+-|+|+. ..+++++.|-.+..||+.+.. .+.....-......++|+.....+.+.+....|
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i  182 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI  182 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence            345556788999999999999965 488999999999999998765 344444445567889999866666666677889


Q ss_pred             EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (389)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  213 (389)
                      .+||++.+..      ....+++|...|..+.|..--...+.+.+.||+|+.||...........    .....+|..-.
T Consensus       183 ~vwd~r~gs~------pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~----vtt~~piw~~r  252 (1081)
T KOG0309|consen  183 FVWDLRKGST------PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT----VTTNFPIWRGR  252 (1081)
T ss_pred             EEEeccCCCc------ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee----ccccCcceecc
Confidence            9999987542      5677888999999999987655678999999999999987653322221    12333444444


Q ss_pred             eeCCCCcE----------EEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecC----------CCEEEEEecCCe
Q 016458          214 ISGSNSRM----------FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD----------GNRFGTGSDDGT  273 (389)
Q Consensus       214 ~~~~~~~~----------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~l~~~~~dg~  273 (389)
                      +.|....+          +..-..+.....|+..+...++..+.+|...|....|-..          .-.|++=+.|..
T Consensus       253 ~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~  332 (1081)
T KOG0309|consen  253 YLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT  332 (1081)
T ss_pred             ccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence            44422222          2222223344455655666889999999998876666431          225899999999


Q ss_pred             EEEEECCC
Q 016458          274 CRLFDIRT  281 (389)
Q Consensus       274 i~i~d~~~  281 (389)
                      +++|-+.+
T Consensus       333 lrlWpI~~  340 (1081)
T KOG0309|consen  333 LRLWPIDS  340 (1081)
T ss_pred             eEeeeccH
Confidence            99998754

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.19  E-value=7.7e-10  Score=89.67  Aligned_cols=156  Identities=14%  Similarity=0.254  Sum_probs=108.6

Q ss_pred             EEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe--eeccceEEEEEecCCCEEEEEecCCe---EEEEECCCCceee
Q 016458          212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSDDGT---CRLFDIRTGHQLQ  286 (389)
Q Consensus       212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~  286 (389)
                      +..++ .+.+++++..+....+++.+...+....+.  .-....+++.|..+......+..-|.   +.+|....+....
T Consensus        68 ~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~  146 (390)
T KOG3914|consen   68 VLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP  146 (390)
T ss_pred             cccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch
Confidence            34444 788888888888887888776533121111  11223345555555555555544444   4444444333222


Q ss_pred             EeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCe
Q 016458          287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN  366 (389)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  366 (389)
                      .      ..|...++.++++||+++|+++..|+.|+|-.+.....+..+-   .+|..-|..++.-++ ..|+++|.|++
T Consensus       147 ~------lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc---lGH~eFVS~isl~~~-~~LlS~sGD~t  216 (390)
T KOG3914|consen  147 I------LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC---LGHKEFVSTISLTDN-YLLLSGSGDKT  216 (390)
T ss_pred             h------hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc---cccHhheeeeeeccC-ceeeecCCCCc
Confidence            2      2344459999999999999999999999999887766666654   689999999999765 45899999999


Q ss_pred             eEEeecceecccCccc
Q 016458          367 LKVNLGFWRVQEGALS  382 (389)
Q Consensus       367 i~i~~~~W~~~~~~~~  382 (389)
                      +++    ||+.+|+..
T Consensus       217 lr~----Wd~~sgk~L  228 (390)
T KOG3914|consen  217 LRL----WDITSGKLL  228 (390)
T ss_pred             EEE----EecccCCcc
Confidence            999    999999865

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.19  E-value=6.4e-08  Score=78.60  Aligned_cols=189  Identities=17%  Similarity=0.205  Sum_probs=121.8

Q ss_pred             cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeE-Eeeec
Q 016458          172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHE  250 (389)
Q Consensus       172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~  250 (389)
                      ..+++++.++.|..||..+++....+..      ...+......  .+..+++++.++.++.+|..++ +.+.. .....
T Consensus        37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~------~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG-~~~W~~~~~~~  107 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKTGKVLWRFDL------PGPISGAPVV--DGGRVYVGTSDGSLYALDAKTG-KVLWSIYLTSS  107 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSEEEEEEEC------SSCGGSGEEE--ETTEEEEEETTSEEEEEETTTS-CEEEEEEE-SS
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEeec------cccccceeee--cccccccccceeeeEecccCCc-ceeeeeccccc
Confidence            4677778999999999999998888742      1111111111  3445666678889999998888 44444 23221


Q ss_pred             c---ceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC------eeEEEeCCCCCEEEEEecCCcE
Q 016458          251 G---DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH------VTSIAFSISGRLLFAGYSNGDC  321 (389)
Q Consensus       251 ~---~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------i~~~~~~~~~~~l~~~~~dg~i  321 (389)
                      .   ..........+..++++..++.|..+|+++|+.+......... ....      +..-....++ .+++++.++.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~  185 (238)
T PF13360_consen  108 PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR-GSSPISSFSDINGSPVISDG-RVYVSSGDGRV  185 (238)
T ss_dssp             CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT--SS--EEEETTEEEEEECCTT-EEEEECCTSSE
T ss_pred             cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC-CCcceeeecccccceEEECC-EEEEEcCCCeE
Confidence            1   1122333334788999998999999999999998877663322 1111      1222222344 77777788864


Q ss_pred             EEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          322 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       322 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      .-+|+.+++.+...    .  ...+..+ ...++..|+.++.++.+..    ||+.+|+..
T Consensus       186 ~~~d~~tg~~~w~~----~--~~~~~~~-~~~~~~~l~~~~~~~~l~~----~d~~tG~~~  235 (238)
T PF13360_consen  186 VAVDLATGEKLWSK----P--ISGIYSL-PSVDGGTLYVTSSDGRLYA----LDLKTGKVV  235 (238)
T ss_dssp             EEEETTTTEEEEEE----C--SS-ECEC-EECCCTEEEEEETTTEEEE----EETTTTEEE
T ss_pred             EEEECCCCCEEEEe----c--CCCccCC-ceeeCCEEEEEeCCCEEEE----EECCCCCEE
Confidence            44499999977643    2  2223331 2356778888889999999    999999875

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.18  E-value=6.5e-08  Score=84.56  Aligned_cols=258  Identities=13%  Similarity=0.043  Sum_probs=154.2

Q ss_pred             CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecc--
Q 016458           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG--  156 (389)
Q Consensus        79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~--  156 (389)
                      +..++.++.+|.+..+|..+|+.+...............  .+..++++..+|.+.-+|..+++.       .-....  
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~-------~W~~~~~~  190 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAV-------KWTVNLDV  190 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCE-------eeeecCCC
Confidence            346777788899999999999988877654321111111  245667777889999999987652       111111  


Q ss_pred             -------cccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCC--CCeeEEEeeC-CCCcEEEEee
Q 016458          157 -------HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT--ADVLSVSISG-SNSRMFVSGS  226 (389)
Q Consensus       157 -------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~-~~~~~l~~~~  226 (389)
                             ...++    .. +  ..++.++.+|.+..+|..+++..............  .....+..+| -.+..+++++
T Consensus       191 ~~~~~~~~~sP~----v~-~--~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~  263 (394)
T PRK11138        191 PSLTLRGESAPA----TA-F--GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA  263 (394)
T ss_pred             CcccccCCCCCE----EE-C--CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE
Confidence                   11111    11 2  24677788999999999999876654211100000  0000111111 0234566677


Q ss_pred             CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeC
Q 016458          227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  306 (389)
Q Consensus       227 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  306 (389)
                      .+|.+..+|..++ +.+-...  ......+..  .+..++.++.+|.+..+|..+++.+..........    ..+... 
T Consensus       264 ~~g~l~ald~~tG-~~~W~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~----~~sp~v-  333 (394)
T PRK11138        264 YNGNLVALDLRSG-QIVWKRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL----LTAPVL-  333 (394)
T ss_pred             cCCeEEEEECCCC-CEEEeec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc----ccCCEE-
Confidence            8899999999887 3332221  111112222  46678888899999999999987765432211111    111122 


Q ss_pred             CCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCee-EEEECCCCCeEEeeeCCCeeEE
Q 016458          307 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       307 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                       .+.+|++++.+|.++++|..+|+.+....    .....+. ...+  .+..|+.++.||.+..
T Consensus       334 -~~g~l~v~~~~G~l~~ld~~tG~~~~~~~----~~~~~~~s~P~~--~~~~l~v~t~~G~l~~  390 (394)
T PRK11138        334 -YNGYLVVGDSEGYLHWINREDGRFVAQQK----VDSSGFLSEPVV--ADDKLLIQARDGTVYA  390 (394)
T ss_pred             -ECCEEEEEeCCCEEEEEECCCCCEEEEEE----cCCCcceeCCEE--ECCEEEEEeCCceEEE
Confidence             25678889999999999999999888773    2222222 1122  2447888899999887

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=3.1e-09  Score=87.51  Aligned_cols=260  Identities=11%  Similarity=0.005  Sum_probs=175.2

Q ss_pred             CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC-CCeEEEE
Q 016458          108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLW  186 (389)
Q Consensus       108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw  186 (389)
                      |...|+.+. ....+++.+++.||.++.|.-..-.    -......+..|.+.|.+++.+.++ .++.+.+. |..++++
T Consensus         8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~is----GvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~Kvf   81 (558)
T KOG0882|consen    8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRIS----GVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVF   81 (558)
T ss_pred             ccceeeeEe-eehhheEEeeecchhhhhcCCCCcc----ceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEE
Confidence            444454443 3456789999999999999765411    223455667889999999999987 67888777 9999999


Q ss_pred             eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC--cEEEEeeCCCceEEEeCCCCC-cceeEEeeeccceEEEEEecCCC
Q 016458          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNS--RMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGN  263 (389)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~  263 (389)
                      |+++-..+..+....   .++. .++..++.+.  .+.++...+|.+.++|-.... +....-.-|..+|.++.+.+-++
T Consensus        82 DvEn~DminmiKL~~---lPg~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D  157 (558)
T KOG0882|consen   82 DVENFDMINMIKLVD---LPGF-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD  157 (558)
T ss_pred             Eeeccchhhhccccc---CCCc-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence            998876665543211   1111 1222222111  233344568999999987664 33344456899999999999999


Q ss_pred             EEEEEecCCeEEEEECCC-Cc-----eeeEeecc----CCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEE
Q 016458          264 RFGTGSDDGTCRLFDIRT-GH-----QLQVYYQQ----HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL  333 (389)
Q Consensus       264 ~l~~~~~dg~i~i~d~~~-~~-----~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  333 (389)
                      .+++....|.|.-|.... .+     ....+...    .........+++.|+|+|..+.+-+.|..|+++++.+++.+.
T Consensus       158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq  237 (558)
T KOG0882|consen  158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ  237 (558)
T ss_pred             ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence            999999999999999773 11     11111000    001122347899999999999999999999999999887766


Q ss_pred             eecCcC----------------------------CCCC-CCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          334 NLGSLQ----------------------------NSHE-GRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       334 ~~~~~~----------------------------~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      .+....                            ..|. ..-+.+.|...|++|+-|+-=| |++    .++.++...
T Consensus       238 eiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikv----in~~tn~v~  310 (558)
T KOG0882|consen  238 EIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKV----INLDTNTVV  310 (558)
T ss_pred             hhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEE----EEeecCeEE
Confidence            553211                            0122 2346678888999998887654 666    788877654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.12  E-value=2.6e-10  Score=63.00  Aligned_cols=38  Identities=37%  Similarity=0.866  Sum_probs=36.5

Q ss_pred             eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEe
Q 016458           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN   95 (389)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~   95 (389)
                      ++.+++.+|.++|++|+|+|++++|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.10  E-value=4.7e-07  Score=73.10  Aligned_cols=234  Identities=15%  Similarity=0.167  Sum_probs=151.9

Q ss_pred             EEEEEEcC-CCCeEEEEecCCc-EEEEeCCCCCeeEEEeeCCCcE--EEEEECCCCcEEEEec-----CCCcEEEEeCCC
Q 016458           70 VYSLDWTS-ERNRIVSASQDGR-LIVWNALTSQKTHAIKLPCAWV--MTCAFSPTGQSVACGG-----LDSVCSIFNLNS  140 (389)
Q Consensus        70 v~~~~~~~-~~~~l~~~~~dg~-v~iw~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~-----~dg~i~vw~~~~  140 (389)
                      .-.++.+| ....++.+-.-|+ ..+||..+++....+....+.-  -.-.|+++|++|++.-     ..|.|-|||...
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            34577888 4556677766654 6789999999888776554432  2468999999999863     358899999984


Q ss_pred             CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee-----------------CCCeEEEEeCCCCeeEEEecCcccC
Q 016458          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-----------------GDQTCVLWDITTGLRTSVFGGEFQS  203 (389)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~i~iwd~~~~~~~~~~~~~~~~  203 (389)
                            .+.....+..|.-....+.+.|+++.+++.-+                 .+-.+...|..+++.+...... ..
T Consensus        87 ------~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp-~~  159 (305)
T PF07433_consen   87 ------GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP-PD  159 (305)
T ss_pred             ------CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC-cc
Confidence                  23355666666666677889999854444321                 2345666677777776664211 02


Q ss_pred             CCCCCeeEEEeeCCCCcEEEEeeCCC-------ceEEEeCCCCCcceeEE-------eeeccceEEEEEecCCCEEEEEe
Q 016458          204 GHTADVLSVSISGSNSRMFVSGSCDS-------TARLWDTRVASRAVRTF-------HGHEGDVNTVKFFPDGNRFGTGS  269 (389)
Q Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~  269 (389)
                      .|...+..+++.+ ++..++..-..|       .|.+++...   .+..+       ..-.+.+-+|++++++.++++.+
T Consensus       160 ~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts  235 (305)
T PF07433_consen  160 LHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS  235 (305)
T ss_pred             ccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC
Confidence            3667899999987 555554433332       233333322   12222       22346788999999998876555


Q ss_pred             -cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEE
Q 016458          270 -DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV  323 (389)
Q Consensus       270 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (389)
                       ..|.+.+||..++..+.......       +..++-.+++ ++++. ..|.+..
T Consensus       236 PrGg~~~~~d~~tg~~~~~~~l~D-------~cGva~~~~~-f~~ss-G~G~~~~  281 (305)
T PF07433_consen  236 PRGGRVAVWDAATGRLLGSVPLPD-------ACGVAPTDDG-FLVSS-GQGQLIR  281 (305)
T ss_pred             CCCCEEEEEECCCCCEeeccccCc-------eeeeeecCCc-eEEeC-CCccEEE
Confidence             67889999999998887665432       6777777666 44444 4455433

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.10  E-value=6.3e-10  Score=88.44  Aligned_cols=164  Identities=16%  Similarity=0.233  Sum_probs=121.0

Q ss_pred             EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-----eeEEEecC
Q 016458          125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-----LRTSVFGG  199 (389)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~  199 (389)
                      ++.+.+-.|-+-+++++.        .+.+. .++.|.++.|...+ ++++.|+.+|.|..+|++..     .+...+  
T Consensus       228 fs~G~sqqv~L~nvetg~--------~qsf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--  295 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGH--------QQSFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--  295 (425)
T ss_pred             ecccccceeEEEEeeccc--------ccccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEEE--
Confidence            444556677788887743        23333 56788999998876 79999999999999999875     333333  


Q ss_pred             cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc---eeEEeeeccceEE--EEEecCCCEEEEEecCCeE
Q 016458          200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA---VRTFHGHEGDVNT--VKFFPDGNRFGTGSDDGTC  274 (389)
Q Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~--~~~~~~~~~l~~~~~dg~i  274 (389)
                          -|.+.|+++.....++.+|++.+.+|.|.+||.|.. +.   +.++.+|-+.-.-  +-..+....+++++.|-..
T Consensus       296 ----yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt  370 (425)
T KOG2695|consen  296 ----YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT  370 (425)
T ss_pred             ----EcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hcccceeeeecccccccccccccccccceEEEccCeeEE
Confidence                588899999888767788999999999999999976 44   7788888654332  2344566788899999999


Q ss_pred             EEEECCCCceeeEeeccCCCCCCCCeeEEEeC
Q 016458          275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  306 (389)
Q Consensus       275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  306 (389)
                      +||.++.+..+.+++....... ..+.+++|.
T Consensus       371 RiWsl~~ghLl~tipf~~s~~e-~d~~sv~~~  401 (425)
T KOG2695|consen  371 RIWSLDSGHLLCTIPFPYSASE-VDIPSVAFD  401 (425)
T ss_pred             EEEecccCceeeccCCCCcccc-ccccceehh
Confidence            9999999999888766543211 124455553

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.09  E-value=8.8e-07  Score=71.55  Aligned_cols=231  Identities=18%  Similarity=0.184  Sum_probs=145.0

Q ss_pred             EEEEEECC-CCcEEEEecCCCc-EEEEeCCCCCCCC-CCCcceeeecccccceEEEEEeeCCCcEEEEee-----CCCeE
Q 016458          112 VMTCAFSP-TGQSVACGGLDSV-CSIFNLNSPTDKD-GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-----GDQTC  183 (389)
Q Consensus       112 v~~~~~~~-~~~~l~~~~~dg~-i~vw~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i  183 (389)
                      ...++.+| ....++.+-.-|. ..+||..++.... ...+.-.-+.+|      -.|+++| .+|++.-     ..|.|
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG-~~LytTEnd~~~g~G~I   79 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDG-RLLYTTENDYETGRGVI   79 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCC-CEEEEeccccCCCcEEE
Confidence            34567788 5556666666554 6678887765211 011122334445      4799998 5666643     35899


Q ss_pred             EEEeCC-CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee------------------CCCceEEEeCCCCCccee
Q 016458          184 VLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS------------------CDSTARLWDTRVASRAVR  244 (389)
Q Consensus       184 ~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~  244 (389)
                      -|||.. +...+..+     ..+.-....+.+.| ++..|+++.                  .+.++...|..++ ..+.
T Consensus        80 gVyd~~~~~~ri~E~-----~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~  152 (305)
T PF07433_consen   80 GVYDAARGYRRIGEF-----PSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLE  152 (305)
T ss_pred             EEEECcCCcEEEeEe-----cCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-ceee
Confidence            999999 66777777     56767778888998 665555542                  2335566666666 4444


Q ss_pred             E--E--eeeccceEEEEEecCCCEEEEEecCCe-------EEEEECCCCceeeEeeccC--CCCCCCCeeEEEeCCCCCE
Q 016458          245 T--F--HGHEGDVNTVKFFPDGNRFGTGSDDGT-------CRLFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRL  311 (389)
Q Consensus       245 ~--~--~~~~~~i~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~  311 (389)
                      +  +  ..|...|..+++.++|..++..-..|.       |-+++.  +..+..+....  ...-...+-++++++++.+
T Consensus       153 q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~  230 (305)
T PF07433_consen  153 QVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRL  230 (305)
T ss_pred             eeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCE
Confidence            4  3  237778999999999876665543332       333432  22222222211  1122346899999999998


Q ss_pred             EEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458          312 LFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (389)
Q Consensus       312 l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  365 (389)
                      +++++ ..|.+.+||..+++.+....      -..+..++-.+++ ++++.+.-.
T Consensus       231 ia~tsPrGg~~~~~d~~tg~~~~~~~------l~D~cGva~~~~~-f~~ssG~G~  278 (305)
T PF07433_consen  231 IAVTSPRGGRVAVWDAATGRLLGSVP------LPDACGVAPTDDG-FLVSSGQGQ  278 (305)
T ss_pred             EEEECCCCCEEEEEECCCCCEeeccc------cCceeeeeecCCc-eEEeCCCcc
Confidence            86665 45689999999999887662      2346777777776 666655433

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=1.4e-08  Score=82.68  Aligned_cols=258  Identities=12%  Similarity=0.109  Sum_probs=152.8

Q ss_pred             cCCCcceeeeecccccCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCC-cEEEEecC
Q 016458           52 FGPTDLVCCRTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG-QSVACGGL  129 (389)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~  129 (389)
                      +.+.+++....+.+|...|..++|+|..+ ++..++.+.+|+|.|+++...+..+..+ ..+.+++|.-+. .++++|..
T Consensus       178 l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~  256 (463)
T KOG1645|consen  178 LESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQ  256 (463)
T ss_pred             eccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEecc
Confidence            44556666667788899999999999877 7888999999999999999999888888 679999998755 66788888


Q ss_pred             CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCC-----CcEEEEeeCCCeEEEEeCCCCe--eEEEecCccc
Q 016458          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-----DTHLITSSGDQTCVLWDITTGL--RTSVFGGEFQ  202 (389)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~  202 (389)
                      +|.|.|||++.+......    ........+|..++..+.+     +.+++....+  +..|++....  .....    .
T Consensus       257 nG~VlvyD~R~~~~~~~e----~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vl----e  326 (463)
T KOG1645|consen  257 NGMVLVYDMRQPEGPLME----LVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVL----E  326 (463)
T ss_pred             CceEEEEEccCCCchHhh----hhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccc----c
Confidence            999999999985522111    1111122344444443321     1233333332  4456554321  11111    1


Q ss_pred             CCCCCCeeEEEeeCCCCcEEEEeeCCCc---eE---E-EeCCCCCcceeEEeee-ccc------eEEEEEecCCCEEE-E
Q 016458          203 SGHTADVLSVSISGSNSRMFVSGSCDST---AR---L-WDTRVASRAVRTFHGH-EGD------VNTVKFFPDGNRFG-T  267 (389)
Q Consensus       203 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~---i~---i-~d~~~~~~~~~~~~~~-~~~------i~~~~~~~~~~~l~-~  267 (389)
                      ....+.+.++.+.+..+.+|++.-.+..   ++   . -|.+.+......-..+ .++      -..+.-.++.++++ +
T Consensus       327 le~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~  406 (463)
T KOG1645|consen  327 LEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV  406 (463)
T ss_pred             cCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEe
Confidence            3446677788888755666666544211   00   0 1111111111111111 000      01122223445554 4


Q ss_pred             EecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC-CC-CEEEEEecCCcEEEEEcc
Q 016458          268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SG-RLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~~l~~~~~dg~i~i~d~~  327 (389)
                      +...+.+.+||..+++....+....      +|.+++... ++ .+|++- .|..++||..+
T Consensus       407 gd~tn~lil~D~~s~evvQ~l~~~e------pv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e  461 (463)
T KOG1645|consen  407 GDSTNELILQDPHSFEVVQTLALSE------PVLDICPNDTNGSSYLALL-TDDRVHIYKNE  461 (463)
T ss_pred             cCCcceeEEeccchhheeeecccCc------ceeecceeecCCcchhhhe-ecceEEEEecC
Confidence            4566789999999999888876653      367766543 33 366655 45578888654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.08  E-value=5.5e-09  Score=93.51  Aligned_cols=181  Identities=14%  Similarity=0.179  Sum_probs=139.7

Q ss_pred             CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccccc
Q 016458           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG  159 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  159 (389)
                      ..++.|+-...+..+|+.+.+.........+.|.-++.  +++++.+|...|+|.+-|.++.+       ....+..|.+
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~-------~iht~~aHs~  218 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE-------TIHTFDAHSG  218 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCc-------eeeeeecccc
Confidence            35666666667888898888887777766655666654  68899999999999999998754       7889999999


Q ss_pred             ceEEEEEeeCCCcEEEEeeC---------CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCc
Q 016458          160 YVSCCQYVPDEDTHLITSSG---------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST  230 (389)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  230 (389)
                      .|.++...  | ++|+++|.         |..|+|||++....+..+.     -+ ....-+.|+|.-...+++++..|.
T Consensus       219 siSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~-----~~-~~P~flrf~Psl~t~~~V~S~sGq  289 (1118)
T KOG1275|consen  219 SISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ-----FP-YGPQFLRFHPSLTTRLAVTSQSGQ  289 (1118)
T ss_pred             ceeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCcc-----cc-cCchhhhhcccccceEEEEecccc
Confidence            99876664  3 67888774         5668999999877666552     22 223567788877888999999999


Q ss_pred             eEEEe---CCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEE
Q 016458          231 ARLWD---TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (389)
Q Consensus       231 i~i~d---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (389)
                      ..+-|   +.++...+..+......+..++++++++.++.|..+|.|.+|.
T Consensus       290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            99999   4443233344444555699999999999999999999999998

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=99.05  E-value=3e-06  Score=69.39  Aligned_cols=247  Identities=16%  Similarity=0.199  Sum_probs=150.4

Q ss_pred             EEEEcCCCCeEEEEe----------cCCcEEEEeCCCCCeeEEEeeCCC-cE------EEEEECCCCcEEEEec--CCCc
Q 016458           72 SLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLPCA-WV------MTCAFSPTGQSVACGG--LDSV  132 (389)
Q Consensus        72 ~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~~~-~v------~~~~~~~~~~~l~~~~--~dg~  132 (389)
                      .+..+|+++.+++++          ..-.|.+||..+......+..+.. ..      ...+++.+++++++..  -...
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            366789999888754          234799999999998888777654 22      2356777887776653  3456


Q ss_pred             EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC-CCeeEEEecCcccCCCCCCeeE
Q 016458          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLRTSVFGGEFQSGHTADVLS  211 (389)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~  211 (389)
                      |.|-|+...+       ....+.-  .  -|....|.++.-|.+-|.||.+.-..+. .|+........+.......+..
T Consensus       120 VtVVDl~~~k-------vv~ei~~--P--GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~  188 (342)
T PF06433_consen  120 VTVVDLAAKK-------VVGEIDT--P--GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEH  188 (342)
T ss_dssp             EEEEETTTTE-------EEEEEEG--T--SEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S-
T ss_pred             EEEEECCCCc-------eeeeecC--C--CEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccc
Confidence            7777877643       3322221  1  1223335445668999999999999888 4444433222121222222233


Q ss_pred             EEeeCCCCcEEEEeeCCCceEEEeCCCCCc-ceeEEee----------eccceEEEEEecCCCEEEEEecC---------
Q 016458          212 VSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFHG----------HEGDVNTVKFFPDGNRFGTGSDD---------  271 (389)
Q Consensus       212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~d---------  271 (389)
                      -++.. .+..++--+.+|.|+-.|+..... ....+..          -.+.-.-+++++..+.|++.-..         
T Consensus       189 ~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdp  267 (342)
T PF06433_consen  189 PAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDP  267 (342)
T ss_dssp             -EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-
T ss_pred             cceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCC
Confidence            34444 344444467889999988875521 1111110          11234558888866666654321         


Q ss_pred             -CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEE-ecCCcEEEEEcccceEEEeec
Q 016458          272 -GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAG-YSNGDCYVWDTLLAKVVLNLG  336 (389)
Q Consensus       272 -g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~~dg~i~i~d~~~~~~~~~~~  336 (389)
                       ..|.++|+.+++.+..+.....      +.++..+.+.+ +|++. ..++.+.+||..+++.+.++.
T Consensus       268 gteVWv~D~~t~krv~Ri~l~~~------~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  268 GTEVWVYDLKTHKRVARIPLEHP------IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEE------ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             ceEEEEEECCCCeEEEEEeCCCc------cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence             1488999999999988876432      77999998776 66554 457899999999999999885

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=99.03  E-value=2.5e-07  Score=79.33  Aligned_cols=283  Identities=11%  Similarity=0.078  Sum_probs=146.7

Q ss_pred             cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC--C
Q 016458           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD--G  146 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~--~  146 (389)
                      .|+++.|.++..-|++|...|.|.||.+...+.-.  .....+-....+.+-      ...++.-.+-|+.......  .
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~   74 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE   74 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence            58999999998899999999999999876543322  000011111111110      0011122233443321111  1


Q ss_pred             CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc---cCCCCCCeeEEEeeC----CC-
Q 016458          147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF---QSGHTADVLSVSISG----SN-  218 (389)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~----~~-  218 (389)
                      .+.....+....++|++++.+.-|  +++.|..+|.+.|.|++....+..-....   .......++++.|..    .+ 
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~  152 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG  152 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred             ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence            123344455568999999998765  89999999999999998887776632211   123445677888762    12 


Q ss_pred             --CcEEEEeeCCCceEEEeCCC-C-CcceeE----EeeeccceEEEE-EecC--------------------CCEEEEEe
Q 016458          219 --SRMFVSGSCDSTARLWDTRV-A-SRAVRT----FHGHEGDVNTVK-FFPD--------------------GNRFGTGS  269 (389)
Q Consensus       219 --~~~l~~~~~dg~i~i~d~~~-~-~~~~~~----~~~~~~~i~~~~-~~~~--------------------~~~l~~~~  269 (389)
                        .-.+++|+..|.+.+|.+-- . ..-...    ...+.++|..+. ++.+                    -+-+++..
T Consensus       153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv  232 (395)
T PF08596_consen  153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV  232 (395)
T ss_dssp             SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred             ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence              24788999999999998752 1 111111    113445665554 3211                    02244445


Q ss_pred             cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeC-----CCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCC
Q 016458          270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS-----ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG  344 (389)
Q Consensus       270 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (389)
                      .+..++++...+.+..........     ....+++-     ..+..|++-..+|.+++|.+...+.+..+.........
T Consensus       233 Se~~irv~~~~~~k~~~K~~~~~~-----~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~  307 (395)
T PF08596_consen  233 SESDIRVFKPPKSKGAHKSFDDPF-----LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR  307 (395)
T ss_dssp             -SSEEEEE-TT---EEEEE-SS-E-----EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH
T ss_pred             cccceEEEeCCCCcccceeecccc-----ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccc
Confidence            567899999988776655542111     13334442     35667888899999999999999888887543233334


Q ss_pred             CeeEEEECCCCCeEEeeeCCCe
Q 016458          345 RITCLGLSADGSALCTGSWDTN  366 (389)
Q Consensus       345 ~v~~~~~~~~~~~l~~~~~dg~  366 (389)
                      .+....++++|..++-.+....
T Consensus       308 ~~~~ssis~~Gdi~~~~gpsE~  329 (395)
T PF08596_consen  308 RLSSSSISRNGDIFYWTGPSEI  329 (395)
T ss_dssp             HHTT-EE-TTS-EEEE-SSSEE
T ss_pred             cccccEECCCCCEEEEeCcccE
Confidence            5667788999998877765543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.00  E-value=2.7e-08  Score=88.60  Aligned_cols=282  Identities=14%  Similarity=0.137  Sum_probs=162.4

Q ss_pred             EEEEEcCCCCeEEEEe----cCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCC
Q 016458           71 YSLDWTSERNRIVSAS----QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG  146 (389)
Q Consensus        71 ~~~~~~~~~~~l~~~~----~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  146 (389)
                      +-..|+|...++|+++    ..|+|.||- ++|++.....-+- .+++++|+|..-.|+.|-.-|.+.+|......    
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~-hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e----   92 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV-HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE----   92 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce-ehhhhccChHHHHHhhccccceeEEEecCCce----
Confidence            3457899888888876    458899985 5666544332221 26779999999999999999999999987643    


Q ss_pred             CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEE----------------EecCccc--------
Q 016458          147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS----------------VFGGEFQ--------  202 (389)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------~~~~~~~--------  202 (389)
                         .......|+.+|..+.|+++| ..++++..-|.|.+|....-..+.                .+.....        
T Consensus        93 ---~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la  168 (1416)
T KOG3617|consen   93 ---THTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA  168 (1416)
T ss_pred             ---eeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence               344556799999999999998 789999999999999765211111                1100000        


Q ss_pred             ----CCCCCCee------------EE--EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCE
Q 016458          203 ----SGHTADVL------------SV--SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR  264 (389)
Q Consensus       203 ----~~~~~~v~------------~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  264 (389)
                          .+....+-            +.  .-.| ++..++.++.+|+|+-.|-...  ........ +. ..+-|.+...-
T Consensus       169 KaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~-~g~~F~~~~~~GtVyyvdq~g~--~~~V~k~d-S~-vQmLf~~~~ea  243 (1416)
T KOG3617|consen  169 KAAVTGDESALDEPFNWKESLAERSDEKSGVP-KGTEFLFAGKSGTVYYVDQNGR--QRTVHKLD-SE-VQMLFMGYCEA  243 (1416)
T ss_pred             hhhccCchhhhcccccCccchhhccccccCCC-CCcEEEEEcCCceEEEEcCCCc--EEEEEEcc-ch-HHHHHhcccce
Confidence                00000000            00  0012 5667888888999888875432  22222111 11 11222222222


Q ss_pred             EEEEecCCeEEEEECC----------------CCce-----------eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec
Q 016458          265 FGTGSDDGTCRLFDIR----------------TGHQ-----------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (389)
Q Consensus       265 l~~~~~dg~i~i~d~~----------------~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (389)
                      +++.-.+-.+.++-+.                .|..           +..-....+......+++++++..+..|..|..
T Consensus       244 i~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~  323 (1416)
T KOG3617|consen  244 ISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTK  323 (1416)
T ss_pred             EEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEeccc
Confidence            2222222222222111                0000           000000011112235899999999999999999


Q ss_pred             CCcEEEEEccc-------ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458          318 NGDCYVWDTLL-------AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK  368 (389)
Q Consensus       318 dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  368 (389)
                      .|.+.+|--..       +.....+... ....+.|+.+.|.|-...++.-+....+.
T Consensus       324 ~gnv~~w~~v~~~f~g~p~~d~w~l~~~-~e~~g~I~~i~Wg~~k~~~avn~~~~v~l  380 (1416)
T KOG3617|consen  324 EGNVTIWLDVNKGFQGDPTIDVWTLNGK-RESLGKISLIRWGPIKSTAAVNTEEDVVL  380 (1416)
T ss_pred             CCcEEEeeecCccccCCCCcceEEecCc-hhhccceEEEEeccccchhhhhhhhheee
Confidence            99999995322       1233444322 23446899999998655555554444333

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=4.1e-07  Score=81.46  Aligned_cols=209  Identities=10%  Similarity=0.108  Sum_probs=136.7

Q ss_pred             cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc-EEEEEECCCCcEEEEecCCC-----cEEEEeCCCCC
Q 016458           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-VMTCAFSPTGQSVACGGLDS-----VCSIFNLNSPT  142 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~vw~~~~~~  142 (389)
                      .|+|  |++.+..++.|+.+|.|.+.+ ..-+.++.++.+... |..+....+..+|++.+.|+     .++||+++...
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            4554  557888999999999998887 334444677777666 44443333446777766654     58999998754


Q ss_pred             CCCCCCcce--eeecc-----cccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC----CCeeEEEecCcccCCCCCCeeE
Q 016458          143 DKDGNLPVS--RMLSG-----HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT----TGLRTSVFGGEFQSGHTADVLS  211 (389)
Q Consensus       143 ~~~~~~~~~--~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~~~~v~~  211 (389)
                      .... ..+.  .....     ...++.+++.+.+- ..+++|-.+|.|..+.-.    .+......     .....+|+.
T Consensus       104 ~n~s-P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~-----~~~~~pITg  176 (933)
T KOG2114|consen  104 KNNS-PQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYS-----HRGKEPITG  176 (933)
T ss_pred             CCCC-cceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeee-----ccCCCCcee
Confidence            2221 1122  12222     35678888888885 789999999999988532    11212211     456788999


Q ss_pred             EEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEee
Q 016458          212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (389)
Q Consensus       212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (389)
                      +++..+....+++++ ...|.+|.+.........+..|..++.|.++++....+++++. ..+.+||.........+.
T Consensus       177 L~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  177 LALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             eEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence            999873333233333 4679999998554335557778889999999975554555543 479999988665555554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=3.2e-07  Score=82.13  Aligned_cols=205  Identities=14%  Similarity=0.145  Sum_probs=133.0

Q ss_pred             EECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC-----eEEEEeCCC
Q 016458          116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-----TCVLWDITT  190 (389)
Q Consensus       116 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~  190 (389)
                      +|++.+..++.|+.+|.|.+++-.-        .....++.+...+...-+.-++..+|++.+.|+     .|++|+++.
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~--------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek  101 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSF--------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK  101 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccc--------eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence            4678899999999999988877543        233556666665333334444446777776654     599999875


Q ss_pred             C------eeE---EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC---CCcceeEEeeeccceEEEEE
Q 016458          191 G------LRT---SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV---ASRAVRTFHGHEGDVNTVKF  258 (389)
Q Consensus       191 ~------~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~i~~~~~  258 (389)
                      -      .+.   ..+.... +..+.++.+++++. +-..+|+|-.+|.|..+.-+-   .............+|+.+++
T Consensus       102 ~~~n~sP~c~~~~ri~~~~n-p~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~  179 (933)
T KOG2114|consen  102 VDKNNSPQCLYEHRIFTIKN-PTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL  179 (933)
T ss_pred             cCCCCCcceeeeeeeeccCC-CCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence            3      222   2221111 23567788999997 688999999999999985321   11212222334568999999


Q ss_pred             ecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458          259 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       259 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (389)
                      ..+++.++.+..-..|.+|.+....+......    ++..++.|..+++...-+++++.. .+.+|+.....+...+
T Consensus       180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld----~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf  251 (933)
T KOG2114|consen  180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLD----NNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAF  251 (933)
T ss_pred             ecCCceeEEEEecceeEEEEecCCCcceeeec----cCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeee
Confidence            99888744444456899999884332222122    233358888888766645555444 6999998877777666

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.97  E-value=7.6e-07  Score=82.80  Aligned_cols=245  Identities=14%  Similarity=0.131  Sum_probs=140.5

Q ss_pred             CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (389)
                      +.|.++.|..+.+.++.+..+|.|.+-|.++...... ..-...|.+++|+||+..++..+..+++.+-+-.-...  ..
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i--~E  145 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV-GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI--AE  145 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeee-eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch--hc
Confidence            5899999999999999999999999998777654433 33345699999999999999998888776654321000  00


Q ss_pred             CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe--
Q 016458          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG--  225 (389)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--  225 (389)
                      .+.... ....+....+-|-... + -+-|+ .|.....+..........     ....+.=+++.|-. ++.++++.  
T Consensus       146 ~~L~~d-~~~~sk~v~VGwGrke-T-qfrgs-~gr~~~~~~~~~ek~~~~-----~~~~~~~~~IsWRg-Dg~~fAVs~~  215 (1265)
T KOG1920|consen  146 KPLDAD-DERKSKFVNVGWGRKE-T-QFRGS-EGRQAARQKIEKEKALEQ-----IEQDDHKTSISWRG-DGEYFAVSFV  215 (1265)
T ss_pred             cccccc-cccccccceecccccc-e-eeecc-hhhhcccccccccccccc-----hhhccCCceEEEcc-CCcEEEEEEE
Confidence            000000 0001112222332211 1 11111 111111111111100000     11223345788887 78888873  


Q ss_pred             ---eCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe---cCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458          226 ---SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (389)
Q Consensus       226 ---~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (389)
                         .....|++||.. + ..-..-....+.-.+++|-|.|..+++-.   .|+.|.+|.-+ |-.-..+...... ....
T Consensus       216 ~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~-de~~  291 (1265)
T KOG1920|consen  216 ESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPL-DEKE  291 (1265)
T ss_pred             eccCCceeEEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcc-cccc
Confidence               223789999976 2 22111122233446799999999988764   45679999843 4333333222221 2223


Q ss_pred             eeEEEeCCCCCEEEE---EecCCcEEEEEcccc
Q 016458          300 VTSIAFSISGRLLFA---GYSNGDCYVWDTLLA  329 (389)
Q Consensus       300 i~~~~~~~~~~~l~~---~~~dg~i~i~d~~~~  329 (389)
                      +..++|+.++..|++   ......|++|-+.+-
T Consensus       292 ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  292 VEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             hheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            899999999999988   444455999987764

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.95  E-value=2.1e-05  Score=68.30  Aligned_cols=118  Identities=18%  Similarity=0.199  Sum_probs=83.2

Q ss_pred             ceEEEEEeeCCCcEEEEee----CCCe----EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCce
Q 016458          160 YVSCCQYVPDEDTHLITSS----GDQT----CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA  231 (389)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~----~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  231 (389)
                      ...++.|+-..++.+.+..    .+|.    -.+|+...++......  ........+.+++++| +...++.|+.||+|
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsv--tsipL~s~v~~ca~sp-~E~kLvlGC~DgSi  283 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSV--TSIPLPSQVICCARSP-SEDKLVLGCEDGSI  283 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEE--EEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence            3456677765556665542    2333    3456665543222111  1135677899999999 78889999999999


Q ss_pred             EEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458          232 RLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (389)
Q Consensus       232 ~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (389)
                      .+||....   +.......-.++.++|+|+|..+++|+..|.+.+||+.-..
T Consensus       284 iLyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  284 ILYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            99998754   33333455668899999999999999999999999986543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.90  E-value=1.2e-06  Score=76.86  Aligned_cols=154  Identities=15%  Similarity=0.138  Sum_probs=104.7

Q ss_pred             CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe-eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCC
Q 016458           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG  146 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  146 (389)
                      ..|.--+++..+++++.|+.-|.+++|+-..+.....-. +..+.+..+..+++..++|.|+..|.|.++.+.... ...
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~-p~~  112 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL-PRD  112 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC-CCc
Confidence            344444555677899999999999999977665543322 244556677889999999999999999999988733 222


Q ss_pred             CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee
Q 016458          147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS  226 (389)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  226 (389)
                      .......-..|...|++++|++++ ..+++|...|.|..-.+... ..............+.|..+.+.  ...+|++..
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~-~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl  188 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSR-QAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTL  188 (726)
T ss_pred             ceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechh-hhhccccceeeccCcceEEeecc--cceehHhhh
Confidence            222222334478999999999998 78999999999999888772 11111111113455677777776  444444433

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=3e-07  Score=81.69  Aligned_cols=188  Identities=15%  Similarity=0.210  Sum_probs=132.4

Q ss_pred             CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                      ..+.|++++  ++.|+.|+.+|.|++++.....         .....|...      ..+| .++++|+.||+|.|-.+.
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---------~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~  101 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP---------KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLF  101 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcc---------ccccccccc------ccCC-ceEEEecCCCcEEEeecc
Confidence            345666664  6789999999999999987521         233334333      3344 799999999999999998


Q ss_pred             CCeeEEEecCcccCCCCCCeeEEEeeCC----CCcEEEEeeCCCceEEEeCCCCCcce-eEEeeeccceEEEEEecCCCE
Q 016458          190 TGLRTSVFGGEFQSGHTADVLSVSISGS----NSRMFVSGSCDSTARLWDTRVASRAV-RTFHGHEGDVNTVKFFPDGNR  264 (389)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~  264 (389)
                      +......+      ....++.+++++|+    ..+.+++|+.-| +.++.-+-.+... ..+....++|.++.|.  |++
T Consensus       102 ~~~~~~~~------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~l  172 (846)
T KOG2066|consen  102 TDDEITQY------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNL  172 (846)
T ss_pred             CCccceeE------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcE
Confidence            88877765      56678999999994    356789999888 8787644322221 2455667899999995  778


Q ss_pred             EEEEecCCeEEEEECCCCceeeEeeccCCCCC-CCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE-IPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      +|-++.+| |++||..+++.+..+........ ......+.|.++. .|+.|-.| +|.|..++
T Consensus       173 IAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  173 IAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK  233 (846)
T ss_pred             EEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence            88776664 89999999888877765543211 1123567776554 55566444 78888876

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.90  E-value=1.4e-05  Score=66.96  Aligned_cols=276  Identities=17%  Similarity=0.171  Sum_probs=137.0

Q ss_pred             EEcCCCCeEEEEe-cCC--cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcc
Q 016458           74 DWTSERNRIVSAS-QDG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV  150 (389)
Q Consensus        74 ~~~~~~~~l~~~~-~dg--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  150 (389)
                      +|.++|+.|+.++ .||  .+.+.|+.+++..+...+.........++|+++.++-...+..+.-.|+.+.+       .
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e-------~  114 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE-------E  114 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---------E
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc-------E
Confidence            4677887655444 454  56666888887766655443333345667888887655555678888888744       3


Q ss_pred             eeeecccccceEEEEEeeCCCcEEEEee-----------------------CCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458          151 SRMLSGHKGYVSCCQYVPDEDTHLITSS-----------------------GDQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (389)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  207 (389)
                      ...+......+-...|..+.+...+.+.                       -.+.|...|+.+++....+      ....
T Consensus       115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~------~~~~  188 (386)
T PF14583_consen  115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF------EDTD  188 (386)
T ss_dssp             EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE------EESS
T ss_pred             EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE------ecCc
Confidence            3334444445544566533222333321                       1245677788888776665      3456


Q ss_pred             CeeEEEeeCCCCcEEEEeeCC---C-ceEEEeCCCCCcceeEEeeec--cceEEEEEecCCCEEEEEe-----cCCeEEE
Q 016458          208 DVLSVSISGSNSRMFVSGSCD---S-TARLWDTRVASRAVRTFHGHE--GDVNTVKFFPDGNRFGTGS-----DDGTCRL  276 (389)
Q Consensus       208 ~v~~~~~~~~~~~~l~~~~~d---g-~i~i~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~-----~dg~i~i  276 (389)
                      .+..+.++|.+..+|+-|-+.   . .-+||-++........+..+.  ..+..=-|.|||..|.--+     .+..|.-
T Consensus       189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~  268 (386)
T PF14583_consen  189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAG  268 (386)
T ss_dssp             -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEE
T ss_pred             cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEe
Confidence            678999999888888776542   2 136676554433333333332  2344556889998776533     2446778


Q ss_pred             EECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC----------------cEEEEEcccceEEEeecC---
Q 016458          277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----------------DCYVWDTLLAKVVLNLGS---  337 (389)
Q Consensus       277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----------------~i~i~d~~~~~~~~~~~~---  337 (389)
                      +|+.++.........       +...+..++||++++-=+.|.                -|+++++..+........   
T Consensus       269 ~d~~t~~~~~~~~~p-------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~s  341 (386)
T PF14583_consen  269 YDPDTGERRRLMEMP-------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTS  341 (386)
T ss_dssp             E-TTT--EEEEEEE--------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE----
T ss_pred             eCCCCCCceEEEeCC-------ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCc
Confidence            888887654432221       255677788998876533331                466778776654321110   


Q ss_pred             --cCCCCCC-CeeEEEECCCCCeEEeee-CCCeeEE
Q 016458          338 --LQNSHEG-RITCLGLSADGSALCTGS-WDTNLKV  369 (389)
Q Consensus       338 --~~~~~~~-~v~~~~~~~~~~~l~~~~-~dg~i~i  369 (389)
                        ...++.. .=....|+|||++++-.| ..|...|
T Consensus       342 w~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~v  377 (386)
T PF14583_consen  342 WKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAV  377 (386)
T ss_dssp             ---BTTBSSTT----EE-TTSSEEEEEE-TTSS-EE
T ss_pred             ceeecCCCccCCCCCccCCCCCEEEEECCCCCCccE
Confidence              0011111 113578999999876555 4677666

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.89  E-value=6.2e-06  Score=74.04  Aligned_cols=278  Identities=14%  Similarity=0.112  Sum_probs=158.0

Q ss_pred             CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCC------cEE--EEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcc
Q 016458           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCA------WVM--TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV  150 (389)
Q Consensus        79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  150 (389)
                      +..++.++.++.|.-.|..+++.+..+.....      .+.  .+... ++..++.++.+|.|.-+|.++++..     .
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~-----W  134 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQV-----W  134 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEe-----e
Confidence            34677788889999999999998877654332      000  01111 2267888888999999999886521     1


Q ss_pred             eeeecccc---cceE-EEEEeeCCCcEEEEee---------CCCeEEEEeCCCCeeEEEecCcccCCC------------
Q 016458          151 SRMLSGHK---GYVS-CCQYVPDEDTHLITSS---------GDQTCVLWDITTGLRTSVFGGEFQSGH------------  205 (389)
Q Consensus       151 ~~~~~~~~---~~v~-~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~------------  205 (389)
                      ......+.   ..+. ...+..   ..++.++         .+|.+..+|..+++....+........            
T Consensus       135 ~~~~~~~~~~~~~i~ssP~v~~---~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~  211 (488)
T cd00216         135 KFGNNDQVPPGYTMTGAPTIVK---KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMW  211 (488)
T ss_pred             eecCCCCcCcceEecCCCEEEC---CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCccee
Confidence            11111110   0011 111211   2344443         468899999999998887643110000            


Q ss_pred             --C-CCe-eEEEeeCCCCcEEEEeeCCC------------------ceEEEeCCCCCcceeEEe-e-ecc----ceEEEE
Q 016458          206 --T-ADV-LSVSISGSNSRMFVSGSCDS------------------TARLWDTRVASRAVRTFH-G-HEG----DVNTVK  257 (389)
Q Consensus       206 --~-~~v-~~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~-~-~~~----~i~~~~  257 (389)
                        . ..+ .+.++.+ ....++.++.++                  .|.-+|..++ +..-.+. . |..    ......
T Consensus       212 ~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG-~~~W~~~~~~~~~~~~~~~s~p~  289 (488)
T cd00216         212 GPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG-KVKWFYQTTPHDLWDYDGPNQPS  289 (488)
T ss_pred             cCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC-CEEEEeeCCCCCCcccccCCCCe
Confidence              0 001 1233443 445666676554                  6888898887 4433332 1 110    000011


Q ss_pred             Ee----cCCC---EEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE---------------
Q 016458          258 FF----PDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG---------------  315 (389)
Q Consensus       258 ~~----~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---------------  315 (389)
                      +.    -++.   .+++++.+|.+...|.++++.+.......        ..++.+|  ..++++               
T Consensus       290 ~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--------~~~~~~~--~~vyv~~~~~~~~~~~~~~~~  359 (488)
T cd00216         290 LADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--------QPMAYDP--GLVYLGAFHIPLGLPPQKKKR  359 (488)
T ss_pred             EEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--------cccccCC--ceEEEccccccccCcccccCC
Confidence            11    1333   67888899999999999999887764421        1123333  233332               


Q ss_pred             ---ecCCcEEEEEcccceEEEeecCcCCCCC----CCe--eEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          316 ---YSNGDCYVWDTLLAKVVLNLGSLQNSHE----GRI--TCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       316 ---~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~v--~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                         ..+|.+.-.|+.+++.+.+.......+.    .+.  ..+..  .+..|++++.||.++.    +|..+|++..
T Consensus       360 ~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~a----ld~~tG~~lW  430 (488)
T cd00216         360 CKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRA----FDATTGKELW  430 (488)
T ss_pred             CCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEE----EECCCCceee
Confidence               2467899999999998887743100000    111  12222  4567888899999999    9999987653

The alignment model contains an 8-bladed beta-propeller.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.88  E-value=2e-06  Score=80.09  Aligned_cols=244  Identities=13%  Similarity=0.125  Sum_probs=141.6

Q ss_pred             CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                      ..|.++.|..+...++.+...|.|.+-|..+..        ......-...|.+++|+|++ ..++..+..+++.+-+- 
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--------~eivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~-  138 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLE--------LEIVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTK-  138 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccc--------eeeeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEec-
Confidence            579999999999999999999999999877632        33334456789999999997 67777777777766432 


Q ss_pred             CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe
Q 016458          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  269 (389)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  269 (389)
                      +-.++...+........+....+-|-. .... +-|+ .|.....+.....+.......+ ..=++|+|--||+++++..
T Consensus       139 ~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTq-frgs-~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg~~fAVs~  214 (1265)
T KOG1920|consen  139 DFEPIAEKPLDADDERKSKFVNVGWGR-KETQ-FRGS-EGRQAARQKIEKEKALEQIEQD-DHKTSISWRGDGEYFAVSF  214 (1265)
T ss_pred             cccchhccccccccccccccceecccc-ccee-eecc-hhhhcccccccccccccchhhc-cCCceEEEccCCcEEEEEE
Confidence            222222111000011122233333332 1111 1111 2222222221111111111111 2235689999999998843


Q ss_pred             -----cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE---ecCCcEEEEEcccceEEEeecCcCCC
Q 016458          270 -----DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG---YSNGDCYVWDTLLAKVVLNLGSLQNS  341 (389)
Q Consensus       270 -----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~  341 (389)
                           ....|++||-. +..-..-....     ..-.+++|-|.|..+++-   ++|+.|.+|.- +|-....+......
T Consensus       215 ~~~~~~~RkirV~drE-g~Lns~se~~~-----~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~  287 (1265)
T KOG1920|consen  215 VESETGTRKIRVYDRE-GALNSTSEPVE-----GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPL  287 (1265)
T ss_pred             EeccCCceeEEEeccc-chhhcccCccc-----ccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcc
Confidence                 23789999966 33222221111     124679999999998885   34567999984 33333333222133


Q ss_pred             CCCCeeEEEECCCCCeEEe---eeCCCeeEEeecceeccc
Q 016458          342 HEGRITCLGLSADGSALCT---GSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       342 ~~~~v~~~~~~~~~~~l~~---~~~dg~i~i~~~~W~~~~  378 (389)
                      ....|..++|+.++..|++   ......|++    |-+.+
T Consensus       288 de~~ve~L~Wns~sdiLAv~~~~~e~~~v~l----wt~~N  323 (1265)
T KOG1920|consen  288 DEKEVEELAWNSNSDILAVVTSNLENSLVQL----WTTGN  323 (1265)
T ss_pred             cccchheeeecCCCCceeeeecccccceEEE----EEecC
Confidence            4445999999999999988   555555888    76654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.87  E-value=1.6e-05  Score=61.71  Aligned_cols=105  Identities=11%  Similarity=0.042  Sum_probs=69.0

Q ss_pred             CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccc
Q 016458           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK  158 (389)
Q Consensus        79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  158 (389)
                      |++++.|+..|.+++.+..+|.+...+.....--......+++..+.+|+.|+..+..|..+..       .....+...
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~-------cVykskcgG  135 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG-------CVYKSKCGG  135 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc-------eEEecccCC
Confidence            5678899999999999999998888777654322233456789999999999999999988633       222222222


Q ss_pred             cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC
Q 016458          159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG  191 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  191 (389)
                      +...+-+..| ++..|+.+...|.|.--+....
T Consensus       136 ~~f~sP~i~~-g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  136 GTFVSPVIAP-GDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             ceeccceecC-CCceEEEEeccceEEEEccCCC
Confidence            2222223333 2234666666677666665554

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.87  E-value=2.4e-09  Score=92.11  Aligned_cols=203  Identities=17%  Similarity=0.207  Sum_probs=132.6

Q ss_pred             cEEEEEEcCCC--CeEEEEecCCcEEEEeCCCCCee--EEEeeCCCcEEEEEECC-CCcEEEEec----CCCcEEEEeCC
Q 016458           69 KVYSLDWTSER--NRIVSASQDGRLIVWNALTSQKT--HAIKLPCAWVMTCAFSP-TGQSVACGG----LDSVCSIFNLN  139 (389)
Q Consensus        69 ~v~~~~~~~~~--~~l~~~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i~vw~~~  139 (389)
                      .+.|+++.-+.  ..++.|..+|.|.+-.......-  ...+.+..+.++++|++ |.+.||+|-    .|..+.|||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            46677766543  47888999999999877654332  33456667899999998 566777763    35679999998


Q ss_pred             CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (389)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (389)
                      +.-....+......  +......+++|..+. +++++|.....+.++|++.......      ......+..+.+.|...
T Consensus       138 s~ltvPke~~~fs~--~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~------svnTk~vqG~tVdp~~~  208 (783)
T KOG1008|consen  138 SLLTVPKESPLFSS--STLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVS------SVNTKYVQGITVDPFSP  208 (783)
T ss_pred             cccCCCcccccccc--ccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhh------hhhhhhcccceecCCCC
Confidence            85311111111111  133345578888654 7888898899999999984322221      12344677788888777


Q ss_pred             cEEEEeeCCCceEEEe-CCCCCcceeEEeeecc----ceEEEEEecCC-CEEEEEe-cCCeEEEEECCC
Q 016458          220 RMFVSGSCDSTARLWD-TRVASRAVRTFHGHEG----DVNTVKFFPDG-NRFGTGS-DDGTCRLFDIRT  281 (389)
Q Consensus       220 ~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~----~i~~~~~~~~~-~~l~~~~-~dg~i~i~d~~~  281 (389)
                      +++++.. ||.|.+|| .++-..++..+...+.    .+..++|+|.. ..+++.. ..++|+.+|+..
T Consensus       209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            7876655 99999999 5544444444432222    38899999932 2344444 567899999753

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.81  E-value=1.6e-09  Score=93.20  Aligned_cols=209  Identities=17%  Similarity=0.224  Sum_probs=136.9

Q ss_pred             CcEEEEEECCC--CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee----CCCeE
Q 016458          110 AWVMTCAFSPT--GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS----GDQTC  183 (389)
Q Consensus       110 ~~v~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i  183 (389)
                      ..+.|+++..+  ...+++|..+|.|.+-.+......     ......++..++++++|++-..+.|++|-    .|..+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~  131 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSL  131 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCc
Confidence            34667776553  357888999999999988774422     23445677889999999997556677663    36789


Q ss_pred             EEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CC
Q 016458          184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DG  262 (389)
Q Consensus       184 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~  262 (389)
                      .|||+.++-....-...+.........+++|.. +.+++.+|.....+.++|+|........  -....+..+..+| .+
T Consensus       132 ~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~  208 (783)
T KOG1008|consen  132 KIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSP  208 (783)
T ss_pred             cceecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCC
Confidence            999999873221111111122445566888884 8889999999999999999943222222  2334567788888 77


Q ss_pred             CEEEEEecCCeEEEEE-CCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEE-EecCCcEEEEEcc
Q 016458          263 NRFGTGSDDGTCRLFD-IRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFA-GYSNGDCYVWDTL  327 (389)
Q Consensus       263 ~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~-~~~dg~i~i~d~~  327 (389)
                      +++++-. ||.|.+|| .+.-+................+..++|+|... .+++ .-..+.|+.+|+.
T Consensus       209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            7887765 99999999 44433222222222222223588999999654 3333 3455789999875

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.79  E-value=6e-09  Score=93.14  Aligned_cols=202  Identities=18%  Similarity=0.303  Sum_probs=145.0

Q ss_pred             ceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-C
Q 016458          150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-D  228 (389)
Q Consensus       150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d  228 (389)
                      ....+..|....+|++|+-.. +.|+.|+..|.|++|++.+|......     ..|...|+.+.-+. ++..+++.+. .
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~s~-----ncH~SavT~vePs~-dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEESV-----NCHQSAVTLVEPSV-DGSTQLTSSSSS 1165 (1516)
T ss_pred             cchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCccccccc-----cccccccccccccC-Ccceeeeecccc
Confidence            345566788889999999875 78999999999999999999988887     78999999999887 5555554433 3


Q ss_pred             C-ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC
Q 016458          229 S-TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  307 (389)
Q Consensus       229 g-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (389)
                      . ...+|++.....+.+.+..    -.++.|+..-..-+.|+......+||+.++..+.++......... .-+...|+|
T Consensus      1166 ~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y-~~n~a~FsP 1240 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY-SNNLAHFSP 1240 (1516)
T ss_pred             CchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhh-hccccccCC
Confidence            3 5789999876566666653    356888876555566666678999999999988875443322111 236788999


Q ss_pred             CCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          308 SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       308 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      +..+++   .||  .+||++..+.+..+.    .....+ .-.|+|.|..++.-+.     |    ||+.+=++.
T Consensus      1241 ~D~LIl---ndG--vLWDvR~~~aIh~FD----~ft~~~-~G~FHP~g~eVIINSE-----I----wD~RTF~lL 1296 (1516)
T KOG1832|consen 1241 CDTLIL---NDG--VLWDVRIPEAIHRFD----QFTDYG-GGGFHPSGNEVIINSE-----I----WDMRTFKLL 1296 (1516)
T ss_pred             CcceEe---eCc--eeeeeccHHHHhhhh----hheecc-cccccCCCceEEeech-----h----hhhHHHHHH
Confidence            988776   555  589998887777663    222222 2358898877765442     3    888776554

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.78  E-value=2.3e-08  Score=55.12  Aligned_cols=39  Identities=33%  Similarity=0.620  Sum_probs=35.5

Q ss_pred             ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458          329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR  375 (389)
Q Consensus       329 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~  375 (389)
                      ++++.++    .+|.+.|++|+|+|++.+|++++.|+.|++    ||
T Consensus         1 g~~~~~~----~~h~~~i~~i~~~~~~~~~~s~~~D~~i~v----wd   39 (39)
T PF00400_consen    1 GKCVRTF----RGHSSSINSIAWSPDGNFLASGSSDGTIRV----WD   39 (39)
T ss_dssp             EEEEEEE----ESSSSSEEEEEEETTSSEEEEEETTSEEEE----EE
T ss_pred             CeEEEEE----cCCCCcEEEEEEecccccceeeCCCCEEEE----EC
Confidence            3566777    799999999999999999999999999999    97

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.77  E-value=6.9e-06  Score=65.52  Aligned_cols=209  Identities=15%  Similarity=0.151  Sum_probs=117.9

Q ss_pred             eecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceE
Q 016458          153 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR  232 (389)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  232 (389)
                      .+.+-...+..++|.|+.+.++++....+.|..++.. ++.+..+..    ......-.+++.. ++.++++.-.++.+.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l----~g~~D~EgI~y~g-~~~~vl~~Er~~~L~   89 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL----DGFGDYEGITYLG-NGRYVLSEERDQRLY   89 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-----SS-SSEEEEEE-S-TTEEEEEETTTTEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC----CCCCCceeEEEEC-CCEEEEEEcCCCcEE
Confidence            4445556799999999877888888889999999974 677776642    2245688888875 666666655689999


Q ss_pred             EEeCCCCCcce-----eEEe-----eeccceEEEEEecCCCEEEEEecCCeEEEEECCC---CceeeEeec---cCCCCC
Q 016458          233 LWDTRVASRAV-----RTFH-----GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT---GHQLQVYYQ---QHGENE  296 (389)
Q Consensus       233 i~d~~~~~~~~-----~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~---~~~~~~  296 (389)
                      ++++......+     ..+.     .++..+-.++|+|.++.|+++-...-..+|.++.   ...+.....   ......
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence            99884432211     1111     2445689999999888888887776667777654   222211111   001112


Q ss_pred             CCCeeEEEeCCCC-CEEEEEecCCcEEEEEcccceEEEeecCcCCCC-----CCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          297 IPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH-----EGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       297 ~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      ...+.+++++|.. .+++.+..+..|..+| ..|+++..+......|     -.....|+|+++|.+.+ .+.-+.+++
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~  246 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYR  246 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEE
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEE
Confidence            2247899999864 5666677778899999 5677665553221111     13578999999996544 456555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=1.8e-06  Score=77.01  Aligned_cols=161  Identities=18%  Similarity=0.229  Sum_probs=111.9

Q ss_pred             cccccCcEEEEEEcC-------------CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCC-----CcEE
Q 016458           63 LQGHAGKVYSLDWTS-------------ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT-----GQSV  124 (389)
Q Consensus        63 l~~h~~~v~~~~~~~-------------~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l  124 (389)
                      |..|.+.|.-..+.-             +|.++++|+.||+|.|-.+-+.+...++..+ .++.+++++|+     .+.+
T Consensus        54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~f  132 (846)
T KOG2066|consen   54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQF  132 (846)
T ss_pred             eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhhe
Confidence            444666555555443             4899999999999999999998888877765 56999999997     5789


Q ss_pred             EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC
Q 016458          125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG  204 (389)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  204 (389)
                      ++|+..| +.++.-+=-...     ....+..-.++|.++.|..   ++++-++.+| |++||..+.+.+..++......
T Consensus       133 v~GG~ag-lvL~er~wlgnk-----~~v~l~~~eG~I~~i~W~g---~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~  202 (846)
T KOG2066|consen  133 VSGGMAG-LVLSERNWLGNK-----DSVVLSEGEGPIHSIKWRG---NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSV  202 (846)
T ss_pred             eecCcce-EEEehhhhhcCc-----cceeeecCccceEEEEecC---cEEEEecCCC-cEEEeccccceeeccCCCCCCC
Confidence            9999988 777654321110     1124555678999999974   5677666665 8999999998888775432111


Q ss_pred             -CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCC
Q 016458          205 -HTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  237 (389)
Q Consensus       205 -~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  237 (389)
                       .......+.|.+ + ..|+.| ...+|++..++
T Consensus       203 R~e~fpphl~W~~-~-~~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  203 RPELFPPHLHWQD-E-DRLVIG-WGDSVKICSIK  233 (846)
T ss_pred             CcccCCCceEecC-C-CeEEEe-cCCeEEEEEEe
Confidence             122345677775 3 345544 44578888887

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.76  E-value=2.8e-05  Score=63.85  Aligned_cols=267  Identities=16%  Similarity=0.138  Sum_probs=157.5

Q ss_pred             CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec----------CCCcEEEEeCCCCCCCCCCCcceee--ecc
Q 016458           89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVSRM--LSG  156 (389)
Q Consensus        89 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~--~~~  156 (389)
                      +.+.++|..+++.+-.+...-  .-.+..+|+++.++++.          ..-.|.+||..+-.       ....  +..
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~-------~~~EI~iP~   87 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS-------PTGEIEIPP   87 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE-------EEEEEEETT
T ss_pred             ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCc-------ccceEecCC
Confidence            479999999999887777543  33466799999988753          23469999998743       1111  111


Q ss_pred             -cc----cceEEEEEeeCCCcEEEE--eeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC
Q 016458          157 -HK----GYVSCCQYVPDEDTHLIT--SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS  229 (389)
Q Consensus       157 -~~----~~v~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  229 (389)
                       |.    .....+.++.++ ++++.  .+-...|.|.|+..++.+..+..       ..+..+  .|..+.-|.+-+.||
T Consensus        88 k~R~~~~~~~~~~~ls~dg-k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-------PGC~~i--yP~~~~~F~~lC~DG  157 (342)
T PF06433_consen   88 KPRAQVVPYKNMFALSADG-KFLYVQNFTPATSVTVVDLAAKKVVGEIDT-------PGCWLI--YPSGNRGFSMLCGDG  157 (342)
T ss_dssp             S-B--BS--GGGEEE-TTS-SEEEEEEESSSEEEEEEETTTTEEEEEEEG-------TSEEEE--EEEETTEEEEEETTS
T ss_pred             cchheecccccceEEccCC-cEEEEEccCCCCeEEEEECCCCceeeeecC-------CCEEEE--EecCCCceEEEecCC
Confidence             00    111224566665 33333  23345677888888887777621       122222  333445577888999


Q ss_pred             ceEEEeCCCCCcceeEEee----eccc-eEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCC-------CCC
Q 016458          230 TARLWDTRVASRAVRTFHG----HEGD-VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------NEI  297 (389)
Q Consensus       230 ~i~i~d~~~~~~~~~~~~~----~~~~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~  297 (389)
                      .+.-..+...++.......    ...+ +..-++...+..++..+.+|.|+--|+........-......       =..
T Consensus       158 sl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP  237 (342)
T PF06433_consen  158 SLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP  237 (342)
T ss_dssp             CEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE
T ss_pred             ceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC
Confidence            9999998865555432211    1111 223344555566776888999999998765532221111000       001


Q ss_pred             CCeeEEEeCCCCCEEEEEec---CC-------cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC-eEEee-eCCC
Q 016458          298 PHVTSIAFSISGRLLFAGYS---NG-------DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTG-SWDT  365 (389)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~---dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg  365 (389)
                      ....-+++++..+.|++--.   +|       .|.++|+.+++.+..+.     -..++.+|+.+.+.+ +|++. ..++
T Consensus       238 GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~-----l~~~~~Si~Vsqd~~P~L~~~~~~~~  312 (342)
T PF06433_consen  238 GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP-----LEHPIDSIAVSQDDKPLLYALSAGDG  312 (342)
T ss_dssp             -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE-----EEEEESEEEEESSSS-EEEEEETTTT
T ss_pred             cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe-----CCCccceEEEccCCCcEEEEEcCCCC
Confidence            12345778776665555322   11       48888999999999883     234688999998766 55554 4579


Q ss_pred             eeEEeecceecccCcccC
Q 016458          366 NLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       366 ~i~i~~~~W~~~~~~~~~  383 (389)
                      .+.+    ||..+|++..
T Consensus       313 ~l~v----~D~~tGk~~~  326 (342)
T PF06433_consen  313 TLDV----YDAATGKLVR  326 (342)
T ss_dssp             EEEE----EETTT--EEE
T ss_pred             eEEE----EeCcCCcEEe
Confidence            9999    9999998764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.73  E-value=0.00011  Score=64.17  Aligned_cols=235  Identities=7%  Similarity=0.069  Sum_probs=121.7

Q ss_pred             EEEcCCCCeEEEEecC----------C-cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCC
Q 016458           73 LDWTSERNRIVSASQD----------G-RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP  141 (389)
Q Consensus        73 ~~~~~~~~~l~~~~~d----------g-~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  141 (389)
                      ++.+|.|..+|....+          . .|.||+ ..|+.+..+....+.+.++.|+.+.. |++-..||.+++||+...
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGE  111 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEEC-CCCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCc
Confidence            3445555555554333          2 599998 46788888887778999999988655 556668999999998642


Q ss_pred             CCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEe---cCcccCCCC-CCeeE-EEee
Q 016458          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVF---GGEFQSGHT-ADVLS-VSIS  215 (389)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~---~~~~~~~~~-~~v~~-~~~~  215 (389)
                      . ............-....+....+..+|   ++.-..++.+.+.+-.... ....+   +......+. ..... ..++
T Consensus       112 ~-~fsl~~~i~~~~v~e~~i~~~~~~~~G---ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~  187 (410)
T PF04841_consen  112 F-QFSLGEEIEEEKVLECRIFAIWFYKNG---IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS  187 (410)
T ss_pred             e-eechhhhccccCcccccccccccCCCC---EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence            2 000000011111111222233333344   3333344444444322211 11111   100000000 01111 1223


Q ss_pred             CCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCC
Q 016458          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN  295 (389)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  295 (389)
                      . +....+....++.+.+.+-... ..   +. ..+++..++.||+++++|.-..+|.+.+.+..-.+....+....   
T Consensus       188 ~-~~~~~i~~~~g~~i~~i~~~~~-~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~---  258 (410)
T PF04841_consen  188 S-DRVVEILLANGETIYIIDENSF-KQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS---  258 (410)
T ss_pred             c-CcceEEEEecCCEEEEEEcccc-cc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc---
Confidence            2 3334444445556664443321 11   11 24689999999999999999999999999876665555554431   


Q ss_pred             CCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458          296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (389)
Q Consensus       296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (389)
                       ......+.|+-+...++.-  +..+.+..
T Consensus       259 -~~~p~~~~WCG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  259 -KSPPKQMAWCGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             -CCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence             1235778887554332222  33455554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.73  E-value=6.6e-06  Score=73.02  Aligned_cols=136  Identities=18%  Similarity=0.150  Sum_probs=86.9

Q ss_pred             CCcEEEEeeCCCceEEEeCCC----CCcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCce--------
Q 016458          218 NSRMFVSGSCDSTARLWDTRV----ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQ--------  284 (389)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--------  284 (389)
                      ++++...  .++.|.+.|.++    ....+. .-.-......+.++|||+++++++ .+.+|.++|+.+.+.        
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~-yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~  363 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTR-YVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP  363 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEE-EEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence            4455444  357899999987    223333 333455678999999999987766 588999999987553        


Q ss_pred             ----eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc----------ceEEEeec-CcCCCCCCCeeEE
Q 016458          285 ----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL----------AKVVLNLG-SLQNSHEGRITCL  349 (389)
Q Consensus       285 ----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~-~~~~~~~~~v~~~  349 (389)
                          ........      .....+|+++|+...+-..|..|..||+..          ...+..+. ....+|.....+=
T Consensus       364 ~~~vvaevevGl------GPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~  437 (635)
T PRK02888        364 RDAVVAEPELGL------GPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGE  437 (635)
T ss_pred             cceEEEeeccCC------CcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCC
Confidence                22222211      245678999998877888899999999876          23333331 1112232222222


Q ss_pred             EECCCCCeEEeee
Q 016458          350 GLSADGSALCTGS  362 (389)
Q Consensus       350 ~~~~~~~~l~~~~  362 (389)
                      .-.|||++|++..
T Consensus       438 t~~~dgk~l~~~n  450 (635)
T PRK02888        438 TKEADGKWLVSLN  450 (635)
T ss_pred             cCCCCCCEEEEcc
Confidence            2367888888865

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.70  E-value=6.4e-05  Score=58.42  Aligned_cols=184  Identities=15%  Similarity=0.053  Sum_probs=105.2

Q ss_pred             CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccccc
Q 016458           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG  159 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  159 (389)
                      .+++.|+..+.+.--|..+|+........ ..+.+-+.- -|++++.|+.+|.+++.+.+++.       ....+.. .+
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs-------~~w~f~~-~~   93 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS-------QIWNFVI-LE   93 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEccCcEEEEEecchh-------heeeeee-hh
Confidence            47788888899998999888876554322 122222211 47789999999999999998864       1111111 11


Q ss_pred             ceEE-EEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC
Q 016458          160 YVSC-CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV  238 (389)
Q Consensus       160 ~v~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  238 (389)
                      .|.+ ....+++ .++..|+.|+..+..|..+..++...     +-......+-+..| ....|+.+...|.+.--..+.
T Consensus        94 ~vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cVyks-----kcgG~~f~sP~i~~-g~~sly~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen   94 TVKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKS-----KCGGGTFVSPVIAP-GDGSLYAAITAGAVLAVTKNP  166 (354)
T ss_pred             hhccceEEcCCC-ceEEEecCCCcEEEecccccceEEec-----ccCCceeccceecC-CCceEEEEeccceEEEEccCC
Confidence            2222 2234454 68999999999999999998888775     22333333444555 333444455556554444432


Q ss_pred             CCcceeEEeee--ccceEE--EEEecCCCEEEEEecCCeEEEEECCCCceee
Q 016458          239 ASRAVRTFHGH--EGDVNT--VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ  286 (389)
Q Consensus       239 ~~~~~~~~~~~--~~~i~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  286 (389)
                      .  +...+-.|  .++|.+  ++   -+..+..+.-||.+.-+| ..|+.+.
T Consensus       167 ~--~~~~~w~~~~~~PiF~splc---v~~sv~i~~VdG~l~~f~-~sG~qvw  212 (354)
T KOG4649|consen  167 Y--SSTEFWAATRFGPIFASPLC---VGSSVIITTVDGVLTSFD-ESGRQVW  212 (354)
T ss_pred             C--CcceehhhhcCCccccCcee---ccceEEEEEeccEEEEEc-CCCcEEE
Confidence            2  22222222  122221  11   133455556666666666 4454444

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.70  E-value=0.00011  Score=66.01  Aligned_cols=243  Identities=16%  Similarity=0.186  Sum_probs=138.1

Q ss_pred             CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc--EEEEEECC--CCcEEEEec---------CCCcEEEEeCCCCCCCCC
Q 016458           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAW--VMTCAFSP--TGQSVACGG---------LDSVCSIFNLNSPTDKDG  146 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~~~~---------~dg~i~vw~~~~~~~~~~  146 (389)
                      ..++.++.+|.|.-+|.++|+.+.........  -..+.-+|  .+..++.++         .+|.+.-+|..+++..  
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~--  188 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL--  188 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCcee--
Confidence            57788888999999999999998877654321  01111112  124454543         3577888888775521  


Q ss_pred             CCcceeeec-----------------ccc-cce-EEEEEeeCCCcEEEEeeCCC------------------eEEEEeCC
Q 016458          147 NLPVSRMLS-----------------GHK-GYV-SCCQYVPDEDTHLITSSGDQ------------------TCVLWDIT  189 (389)
Q Consensus       147 ~~~~~~~~~-----------------~~~-~~v-~~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~  189 (389)
                         ......                 .+. ..+ ....+.+.+ ..++.++.++                  .|.-+|..
T Consensus       189 ---W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~  264 (488)
T cd00216         189 ---WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD  264 (488)
T ss_pred             ---eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC
Confidence               000000                 000 011 122333333 4566666554                  79999999


Q ss_pred             CCeeEEEecCcccC-----CCCCC-eeEEE-eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC
Q 016458          190 TGLRTSVFGGEFQS-----GHTAD-VLSVS-ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG  262 (389)
Q Consensus       190 ~~~~~~~~~~~~~~-----~~~~~-v~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (389)
                      +++....+......     ....+ +..+. ........+++++.+|.+..+|.+++ +.+-.....   ...++.+|  
T Consensus       265 tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG-~~~W~~~~~---~~~~~~~~--  338 (488)
T cd00216         265 TGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG-KLISARPEV---EQPMAYDP--  338 (488)
T ss_pred             CCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC-cEeeEeEee---ccccccCC--
Confidence            99998887421100     00000 11111 11101136778888999999999988 444333211   11233344  


Q ss_pred             CEEEEE------------------ecCCeEEEEECCCCceeeEeeccCCCCC---CCCe--eEEEeCCCCCEEEEEecCC
Q 016458          263 NRFGTG------------------SDDGTCRLFDIRTGHQLQVYYQQHGENE---IPHV--TSIAFSISGRLLFAGYSNG  319 (389)
Q Consensus       263 ~~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~i--~~~~~~~~~~~l~~~~~dg  319 (389)
                      ..++.+                  ..+|.+.-.|+.+++.+...........   ..+.  ..+.  ..+..|++++.||
T Consensus       339 ~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG  416 (488)
T cd00216         339 GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADG  416 (488)
T ss_pred             ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCC
Confidence            233332                  2468899999999988877654311000   0001  1122  2567899999999


Q ss_pred             cEEEEEcccceEEEeec
Q 016458          320 DCYVWDTLLAKVVLNLG  336 (389)
Q Consensus       320 ~i~i~d~~~~~~~~~~~  336 (389)
                      .|+.+|..+|+.+.+..
T Consensus       417 ~l~ald~~tG~~lW~~~  433 (488)
T cd00216         417 YFRAFDATTGKELWKFR  433 (488)
T ss_pred             eEEEEECCCCceeeEEE
Confidence            99999999999998874

The alignment model contains an 8-bladed beta-propeller.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.67  E-value=0.00019  Score=62.31  Aligned_cols=269  Identities=17%  Similarity=0.135  Sum_probs=167.6

Q ss_pred             EEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC-CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC
Q 016458           91 LIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD  169 (389)
Q Consensus        91 v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  169 (389)
                      +.+++..+......+.... ....+...+++..+..... ...+...+.....       .......-......+..++.
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~-------~~~~~~~g~~~p~~i~v~~~   84 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNT-------VTQSLSVGGVYPAGVAVNPA   84 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccce-------eeeeccCCCccccceeeCCC
Confidence            5666655555555544443 4667778888855554432 2234444333110       11111111133456788888


Q ss_pred             CCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee--CCCceEEEeCCCCCcceeEEe
Q 016458          170 EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFH  247 (389)
Q Consensus       170 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~  247 (389)
                      +.+.++....+..|.+.|..+........      .......++++|.++.+.++-.  .++.+.+.|..+. .......
T Consensus        85 ~~~vyv~~~~~~~v~vid~~~~~~~~~~~------vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~-~~~~~~~  157 (381)
T COG3391          85 GNKVYVTTGDSNTVSVIDTATNTVLGSIP------VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN-KVTATIP  157 (381)
T ss_pred             CCeEEEecCCCCeEEEEcCcccceeeEee------eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC-eEEEEEe
Confidence            86677777778999999988877776663      2226778899984445555444  3688999998876 4444443


Q ss_pred             eeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC---CcEEE
Q 016458          248 GHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYV  323 (389)
Q Consensus       248 ~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i  323 (389)
                      .-..+ ..++++|+|..+++.. .++.|.+.|........ -..............+.++|+|+++++....   +.+..
T Consensus       158 vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~  235 (381)
T COG3391         158 VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK  235 (381)
T ss_pred             cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence            33334 8899999999666555 78899999977655443 1111111111234778999999977776554   58999


Q ss_pred             EEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC-CeeEEeecceecccCcccC
Q 016458          324 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       324 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~~~~W~~~~~~~~~  383 (389)
                      .|..++........  .... ....+..+|+|.++.+.... +.+.+    =|..+..+..
T Consensus       236 id~~~~~v~~~~~~--~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~v----id~~~~~v~~  289 (381)
T COG3391         236 IDTATGNVTATDLP--VGSG-APRGVAVDPAGKAAYVANSQGGTVSV----IDGATDRVVK  289 (381)
T ss_pred             EeCCCceEEEeccc--cccC-CCCceeECCCCCEEEEEecCCCeEEE----EeCCCCceee
Confidence            99988887765211  1222 45678899999998887444 67777    6666655443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.67  E-value=5.2e-05  Score=60.57  Aligned_cols=212  Identities=14%  Similarity=0.177  Sum_probs=119.4

Q ss_pred             eeecccccCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCeeEEEeeCC-CcEEEEEECCCCcEEEEecCCCcEEEEe
Q 016458           60 CRTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (389)
Q Consensus        60 ~~~l~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (389)
                      .+.+.+-.+.++.++|+|+.+ ++++....+.|...+. +|+.+..+.... +..-.+++..++.++++.-.++.+.+++
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            346777777899999999765 5566667788887885 578888877654 5688899988888888777789999999


Q ss_pred             CCCCCCCCCCCcceeee-----cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC---CeeEEEecC---cccCCCC
Q 016458          138 LNSPTDKDGNLPVSRML-----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT---GLRTSVFGG---EFQSGHT  206 (389)
Q Consensus       138 ~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~---~~~~~~~  206 (389)
                      +......... .....+     ..++..+-.++|.+.++. |+.+-......+|.+..   .........   .......
T Consensus        93 ~~~~~~~~~~-~~~~~~~l~~~~~~N~G~EGla~D~~~~~-L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (248)
T PF06977_consen   93 IDDDTTSLDR-ADVQKISLGFPNKGNKGFEGLAYDPKTNR-LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV  170 (248)
T ss_dssp             E----TT--E-EEEEEEE---S---SS--EEEEEETTTTE-EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred             Eeccccccch-hhceEEecccccCCCcceEEEEEcCCCCE-EEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence            8553311100 001111     134556899999998754 55555655566665543   111111100   0012344


Q ss_pred             CCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec---------cceEEEEEecCCCEEEEEecCCeEEEE
Q 016458          207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE---------GDVNTVKFFPDGNRFGTGSDDGTCRLF  277 (389)
Q Consensus       207 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~  277 (389)
                      ..+.+++++|..+++++.+..+..|..+|.. + +++..+.-..         ...-.|+|.++|++.++ +.-+..++|
T Consensus       171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  171 RDLSGLSYDPRTGHLLILSDESRLLLELDRQ-G-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             S---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             ccccceEEcCCCCeEEEEECCCCeEEEECCC-C-CEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            5688999999888999999999999999954 3 4444443222         24678999999865444 455555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.66  E-value=2.8e-05  Score=66.94  Aligned_cols=269  Identities=17%  Similarity=0.183  Sum_probs=137.1

Q ss_pred             cCCCCeEEEEe---------cCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCC
Q 016458           76 TSERNRIVSAS---------QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG  146 (389)
Q Consensus        76 ~~~~~~l~~~~---------~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  146 (389)
                      |||+++++...         ..+.+.++|+.+++....... ...+....|+|+|+.++... ++.|.+++..++...  
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~--   76 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET--   76 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE--
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE--
Confidence            67888777642         346789999998665443333 45688999999999998885 578999987654310  


Q ss_pred             CCcceeeecc-------c---------ccceEEEEEeeCCCcEEEEeeCCCe----------------------------
Q 016458          147 NLPVSRMLSG-------H---------KGYVSCCQYVPDEDTHLITSSGDQT----------------------------  182 (389)
Q Consensus       147 ~~~~~~~~~~-------~---------~~~v~~~~~~~~~~~~l~~~~~dg~----------------------------  182 (389)
                          ..+..+       -         -+.-..+-|+|++..+++.--.+..                            
T Consensus        77 ----~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G  152 (353)
T PF00930_consen   77 ----QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG  152 (353)
T ss_dssp             ----ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred             ----EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence                001111       0         1123457899988544333333332                            


Q ss_pred             -------EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc-EEEEe-eCC---CceEEEeCCCCCcceeEEeeec
Q 016458          183 -------CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-MFVSG-SCD---STARLWDTRVASRAVRTFHGHE  250 (389)
Q Consensus       183 -------i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~-~~d---g~i~i~d~~~~~~~~~~~~~~~  250 (389)
                             +.++|+.+++....-...........+..+.|.+ ++. +++.- ..+   ..+.++|..++...........
T Consensus       153 ~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~  231 (353)
T PF00930_consen  153 DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD  231 (353)
T ss_dssp             S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred             CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence                   2334444443321110000012345577888888 555 33332 222   2456667765522222222222


Q ss_pred             cce---EEEEEe-cCCC-EEEEEecCCe--EEEEECCCCceeeEeeccCCCCCCCCeeE-EEeCCCCCEEE-EEecC--C
Q 016458          251 GDV---NTVKFF-PDGN-RFGTGSDDGT--CRLFDIRTGHQLQVYYQQHGENEIPHVTS-IAFSISGRLLF-AGYSN--G  319 (389)
Q Consensus       251 ~~i---~~~~~~-~~~~-~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~-~~~~d--g  319 (389)
                      ..|   ....|. +++. +|.....||.  |.+++...+. ...+....-     .|.. +.++++++.|+ ++..+  +
T Consensus       232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~-----~V~~i~~~d~~~~~iyf~a~~~~p~  305 (353)
T PF00930_consen  232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDW-----EVTSILGWDEDNNRIYFTANGDNPG  305 (353)
T ss_dssp             SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS------EEEEEEEECTSSEEEEEESSGGTT
T ss_pred             cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCce-----eecccceEcCCCCEEEEEecCCCCC
Confidence            222   245554 5554 4445556775  5555655444 223322222     2544 67888877554 44432  2


Q ss_pred             --cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458          320 --DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  363 (389)
Q Consensus       320 --~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  363 (389)
                        .|+.-++..+..+..+..    ..+.-..+.|||+|++++....
T Consensus       306 ~r~lY~v~~~~~~~~~~LT~----~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  306 ERHLYRVSLDSGGEPKCLTC----EDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             SBEEEEEETTETTEEEESST----TSSTTEEEEE-TTSSEEEEEEE
T ss_pred             ceEEEEEEeCCCCCeEeccC----CCCCceEEEECCCCCEEEEEEc
Confidence              455556662344455532    2222268999999998876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.55  E-value=2.2e-05  Score=69.86  Aligned_cols=220  Identities=11%  Similarity=-0.005  Sum_probs=130.6

Q ss_pred             EcCCCCeEEE-EecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCC----cEEEEeCCCCCCCCCCCc
Q 016458           75 WTSERNRIVS-ASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS----VCSIFNLNSPTDKDGNLP  149 (389)
Q Consensus        75 ~~~~~~~l~~-~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~vw~~~~~~~~~~~~~  149 (389)
                      ++|||+.+.. .-..+.+.+.|.++.+...++.... ....++++|+|+++++.+.+.    .+..-+....     .  
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~-----d--  271 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER-----D--  271 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccC-----c--
Confidence            4456654432 2234667777888877777776654 457789999999998886432    1222221110     0  


Q ss_pred             ceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC-----CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEE
Q 016458          150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-----GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS  224 (389)
Q Consensus       150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  224 (389)
                      ....+.-.  .+  -.+.++|. +...  .++.|.+.|..+     ......+      .-......+.++|+...++++
T Consensus       272 ~~vvfni~--~i--ea~vkdGK-~~~V--~gn~V~VID~~t~~~~~~~v~~yI------PVGKsPHGV~vSPDGkylyVa  338 (635)
T PRK02888        272 WVVVFNIA--RI--EEAVKAGK-FKTI--GGSKVPVVDGRKAANAGSALTRYV------PVPKNPHGVNTSPDGKYFIAN  338 (635)
T ss_pred             eEEEEchH--HH--HHhhhCCC-EEEE--CCCEEEEEECCccccCCcceEEEE------ECCCCccceEECCCCCEEEEe
Confidence            11111000  00  02344553 3333  367899999988     3444444      345667889999955555556


Q ss_pred             eeCCCceEEEeCCCCCc-----------ceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCC----------Cc
Q 016458          225 GSCDSTARLWDTRVASR-----------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT----------GH  283 (389)
Q Consensus       225 ~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~  283 (389)
                      +..++++.++|+.+...           ......- .......+|.++|+...+..-|..|..|++..          ..
T Consensus       339 nklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~  417 (635)
T PRK02888        339 GKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDP  417 (635)
T ss_pred             CCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCc
Confidence            66799999999987532           1122221 22345688999999888889999999999876          23


Q ss_pred             eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (389)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (389)
                      .+..+..+....|......=.-.|+|++|++..
T Consensus       418 v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        418 IVQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             ceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            344444444433322222223467888888764

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.55  E-value=0.00027  Score=61.85  Aligned_cols=180  Identities=12%  Similarity=0.107  Sum_probs=94.9

Q ss_pred             cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCccc--CCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeC
Q 016458          159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ--SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT  236 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  236 (389)
                      +.+.++.|..+.  .|+....||.+++||+.... ...+.....  ......+....+.. +| + +.-+.++.+.+.+-
T Consensus        81 ~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~-~G-i-vvLt~~~~~~~v~n  154 (410)
T PF04841_consen   81 GRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK-NG-I-VVLTGNNRFYVVNN  154 (410)
T ss_pred             CCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC-CC-E-EEECCCCeEEEEeC
Confidence            789999998853  57788899999999987443 111111100  01111122222221 33 2 22233454544432


Q ss_pred             CCCCcceeEEe----------eeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeC
Q 016458          237 RVASRAVRTFH----------GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  306 (389)
Q Consensus       237 ~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  306 (389)
                      -........+.          .+........++.+....+....++.+.+.+-...+.   +      ....++..+++|
T Consensus       155 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i------~~~~~i~~iavS  225 (410)
T PF04841_consen  155 IDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I------DSDGPIIKIAVS  225 (410)
T ss_pred             ccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c------cCCCCeEEEEEC
Confidence            21111111111          0000000122344444445555555555444322111   1      112359999999


Q ss_pred             CCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC
Q 016458          307 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS  356 (389)
Q Consensus       307 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (389)
                      |+|+++|.-..+|.+.+.+..-.+....+.   ..-......|.|.-+..
T Consensus       226 png~~iAl~t~~g~l~v~ssDf~~~~~e~~---~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  226 PNGKFIALFTDSGNLWVVSSDFSEKLCEFD---TDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             CCCCEEEEEECCCCEEEEECcccceeEEee---cCcCCCCcEEEEECCCc
Confidence            999999999999999999877666666664   22345667888876654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.53  E-value=0.00068  Score=61.36  Aligned_cols=286  Identities=15%  Similarity=0.136  Sum_probs=156.7

Q ss_pred             CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCC-cEE---EEEECC-----CCcEEEEecCCCcEEEEeCCCCCCCCCCCc
Q 016458           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCA-WVM---TCAFSP-----TGQSVACGGLDSVCSIFNLNSPTDKDGNLP  149 (389)
Q Consensus        79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-~v~---~~~~~~-----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  149 (389)
                      +..|+.++.++.|.-.|..+|+.+-.+..... .+.   ++.+..     .+..++.++.++.+.-.|..+++..     
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~-----  143 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVV-----  143 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEE-----
Confidence            45777788888999999999998877654221 111   111111     2356777888999999998876521     


Q ss_pred             ceeeecccc--cceEEEEEeeCCCcEEEEee------CCCeEEEEeCCCCeeEEEecCcccCCC----------------
Q 016458          150 VSRMLSGHK--GYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSGH----------------  205 (389)
Q Consensus       150 ~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~----------------  205 (389)
                      .......+.  ..+.+--..-++  .++.+.      .+|.|..+|.++++.+..+........                
T Consensus       144 W~~~~~~~~~~~~~tssP~v~~g--~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~  221 (527)
T TIGR03075       144 WSKKNGDYKAGYTITAAPLVVKG--KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAK  221 (527)
T ss_pred             eecccccccccccccCCcEEECC--EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccC
Confidence            011111111  011111111122  344443      268999999999998877643211100                


Q ss_pred             ----------CCCe-eEEEeeCCCCcEEEEeeCC-----C-----------ceEEEeCCCCCcceeEEee--ecc-----
Q 016458          206 ----------TADV-LSVSISGSNSRMFVSGSCD-----S-----------TARLWDTRVASRAVRTFHG--HEG-----  251 (389)
Q Consensus       206 ----------~~~v-~~~~~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~--~~~-----  251 (389)
                                ...+ ..+++.| ..++++.+..+     +           .|.-.|++++ +..-.++.  |..     
T Consensus       222 tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG-~~~W~~Q~~~~D~wD~d~  299 (527)
T TIGR03075       222 TWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTG-KIKWHYQTTPHDEWDYDG  299 (527)
T ss_pred             CCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccC-CEEEeeeCCCCCCccccC
Confidence                      0011 1335555 44555554422     2           4556677766 33333332  211     


Q ss_pred             --ceEEEEEecCCC---EEEEEecCCeEEEEECCCCceeeEeec--------cCCCC-----------------CC----
Q 016458          252 --DVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQ--------QHGEN-----------------EI----  297 (389)
Q Consensus       252 --~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~-----------------~~----  297 (389)
                        ...-+.+..+|+   .++.+..+|.+.+.|.++++.+.....        .....                 ..    
T Consensus       300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~  379 (527)
T TIGR03075       300 VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGV  379 (527)
T ss_pred             CCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEE
Confidence              112222324665   788999999999999999987522100        00000                 00    


Q ss_pred             -------CCeeEEEeCCCCCEEEEEecC---------------------------------CcEEEEEcccceEEEeecC
Q 016458          298 -------PHVTSIAFSISGRLLFAGYSN---------------------------------GDCYVWDTLLAKVVLNLGS  337 (389)
Q Consensus       298 -------~~i~~~~~~~~~~~l~~~~~d---------------------------------g~i~i~d~~~~~~~~~~~~  337 (389)
                             ..-..++++|+..++++...+                                 |.|.-+|+.+++.......
T Consensus       380 ~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~  459 (527)
T TIGR03075       380 CPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKE  459 (527)
T ss_pred             CCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecC
Confidence                   001225667766655544332                                 4577888888888887642


Q ss_pred             cCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          338 LQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       338 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      ......+.   +.  -.+.+++.++.||.++.    +|.++|+..
T Consensus       460 ~~p~~~~~---l~--t~g~lvf~g~~~G~l~a----~D~~TGe~l  495 (527)
T TIGR03075       460 DFPLWGGV---LA--TAGDLVFYGTLEGYFKA----FDAKTGEEL  495 (527)
T ss_pred             CCCCCCcc---eE--ECCcEEEEECCCCeEEE----EECCCCCEe
Confidence            11111111   12  24456777888999999    999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.52  E-value=3.7e-05  Score=66.95  Aligned_cols=199  Identities=17%  Similarity=0.200  Sum_probs=119.8

Q ss_pred             CCeeEEEeeCCCcEEEEEECCCCcEEEEe---cCC-CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEE
Q 016458           99 SQKTHAIKLPCAWVMTCAFSPTGQSVACG---GLD-SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL  174 (389)
Q Consensus        99 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  174 (389)
                      +.....+......+..-+|+|++..++..   ... ..+.+++++.+...     ....+.++.   ..-+|+|+|..++
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-----~i~~~~g~~---~~P~fspDG~~l~  253 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-----VILNFNGNN---GAPAFSPDGSKLA  253 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-----eeeccCCcc---CCccCCCCCCEEE
Confidence            44444455555667778899998876544   222 45889999886521     233334333   3458999998778


Q ss_pred             EEeeCCCe--EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccc
Q 016458          175 ITSSGDQT--CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD  252 (389)
Q Consensus       175 ~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  252 (389)
                      ++...||.  |.++|+..+.... +     ....+.-..-.|+|++..++++.+..|.-.||-..........+......
T Consensus       254 f~~~rdg~~~iy~~dl~~~~~~~-L-----t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~  327 (425)
T COG0823         254 FSSSRDGSPDIYLMDLDGKNLPR-L-----TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG  327 (425)
T ss_pred             EEECCCCCccEEEEcCCCCccee-c-----ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC
Confidence            88887776  5566777766433 2     22223333667899555556666667765555444333444555444444


Q ss_pred             eEEEEEecCCCEEEEEecC-Ce--EEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec
Q 016458          253 VNTVKFFPDGNRFGTGSDD-GT--CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (389)
Q Consensus       253 i~~~~~~~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (389)
                      -..-.|+|||++|+..+.. |.  |.+.|+.++.....+.....      ...-.|.++|+.+...+.
T Consensus       328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~------~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYL------NESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccccc------CCCCCcCCCCceEEEecc
Confidence            4477899999999887743 44  77777766654333322211      334567778876655443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.52  E-value=0.00015  Score=61.63  Aligned_cols=221  Identities=13%  Similarity=0.140  Sum_probs=128.8

Q ss_pred             CcEEEEeCCCCCeeEEEeeCC-CcEEEEE---ECCC----CcEEEEecC---------C-CcEEEEeCCCCCCCCCCCcc
Q 016458           89 GRLIVWNALTSQKTHAIKLPC-AWVMTCA---FSPT----GQSVACGGL---------D-SVCSIFNLNSPTDKDGNLPV  150 (389)
Q Consensus        89 g~v~iw~~~~~~~~~~~~~~~-~~v~~~~---~~~~----~~~l~~~~~---------d-g~i~vw~~~~~~~~~~~~~~  150 (389)
                      ..|++.|..+.+.+..+.... +.+.+++   +..+    ..++++|+.         . |.|.++++.........+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            368899988888887776543 4455443   3332    567777743         2 88999999874111112222


Q ss_pred             eeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC
Q 016458          151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS  229 (389)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  229 (389)
                      ... ....++|++++-..  +. +++ +.++.|.+|++.... ......    ......+.++...   ++++++|....
T Consensus        82 i~~-~~~~g~V~ai~~~~--~~-lv~-~~g~~l~v~~l~~~~~l~~~~~----~~~~~~i~sl~~~---~~~I~vgD~~~  149 (321)
T PF03178_consen   82 IHS-TEVKGPVTAICSFN--GR-LVV-AVGNKLYVYDLDNSKTLLKKAF----YDSPFYITSLSVF---KNYILVGDAMK  149 (321)
T ss_dssp             EEE-EEESS-EEEEEEET--TE-EEE-EETTEEEEEEEETTSSEEEEEE----E-BSSSEEEEEEE---TTEEEEEESSS
T ss_pred             EEE-EeecCcceEhhhhC--CE-EEE-eecCEEEEEEccCcccchhhhe----ecceEEEEEEecc---ccEEEEEEccc
Confidence            222 23478899888773  33 433 334889999998887 433321    2233366677665   45889999888


Q ss_pred             ceEEEeCCCCCcceeEEee--eccceEEEEEecCCCEEEEEecCCeEEEEECCC-------Cc-eeeEeeccCCCCCCCC
Q 016458          230 TARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-------GH-QLQVYYQQHGENEIPH  299 (389)
Q Consensus       230 ~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~-~~~~~~~~~~~~~~~~  299 (389)
                      .+.++..+.....+..+..  ....++++.|-++++.++++..+|.+.++....       +. .+......+-.   ..
T Consensus       150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg---~~  226 (321)
T PF03178_consen  150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG---DI  226 (321)
T ss_dssp             SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S---S-
T ss_pred             CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC---Cc
Confidence            8998865543233333332  234588888887767999999999999998763       11 22222221111   13


Q ss_pred             eeEE---EeCC--CCC------EEEEEecCCcEEEE
Q 016458          300 VTSI---AFSI--SGR------LLFAGYSNGDCYVW  324 (389)
Q Consensus       300 i~~~---~~~~--~~~------~l~~~~~dg~i~i~  324 (389)
                      |+++   .+.|  .+.      .++.++.+|.|.+.
T Consensus       227 v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  227 VNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             cceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            6666   5555  222      47788899988844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.50  E-value=0.00038  Score=60.99  Aligned_cols=225  Identities=12%  Similarity=0.086  Sum_probs=116.4

Q ss_pred             ecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE-eCCC
Q 016458           62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF-NLNS  140 (389)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw-~~~~  140 (389)
                      .+-...-....+.++|+|+++++ +.||...|+.....+...  .   +.....+|.++++ +|+-..++.|.++ +++.
T Consensus        27 ~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~--~---G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA--F---GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE--E---EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE
T ss_pred             cCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc--c---CceeEEEEecCcc-EEEEECCCeEEEEEcCcc
Confidence            33344456889999999998888 567888888844333322  1   3345678988555 6666668889996 4432


Q ss_pred             CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (389)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (389)
                      ..        ...+.. ...+..+-.   | .+|...+. +.|.+||+.+++.+..+     . . .+|..+.|++ ++.
T Consensus       100 ~~--------~k~i~~-~~~~~~If~---G-~LL~~~~~-~~i~~yDw~~~~~i~~i-----~-v-~~vk~V~Ws~-~g~  157 (443)
T PF04053_consen  100 EV--------VKSIKL-PFSVEKIFG---G-NLLGVKSS-DFICFYDWETGKLIRRI-----D-V-SAVKYVIWSD-DGE  157 (443)
T ss_dssp             -T--------T------SS-EEEEE----S-SSEEEEET-TEEEEE-TTT--EEEEE-----S-S--E-EEEEE-T-TSS
T ss_pred             cc--------ceEEcC-CcccceEEc---C-cEEEEECC-CCEEEEEhhHcceeeEE-----e-c-CCCcEEEEEC-CCC
Confidence            11        011111 112222222   4 55555544 48999999999999988     2 2 2389999998 777


Q ss_pred             EEEEeeCCCceEEEeCCCC----------CcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeec
Q 016458          221 MFVSGSCDSTARLWDTRVA----------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ  290 (389)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  290 (389)
                      +++..+. ..+.+++.+..          ...+..+..-...|.+.+|..+  .++-.+.. .++.  +..|... .+..
T Consensus       158 ~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~-~i~~  230 (443)
T PF04053_consen  158 LVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG-IIAH  230 (443)
T ss_dssp             EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE-EEEE
T ss_pred             EEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc-eEEE
Confidence            7777764 47888775421          0134444444678899999755  44444444 6665  3333322 2222


Q ss_pred             cCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      -..     ++.-+.+.+..+.++....|+.+..+.+.
T Consensus       231 ld~-----~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  231 LDK-----PLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             -SS-------EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             cCC-----ceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence            111     25556666766778888888888877654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.50  E-value=0.00022  Score=62.47  Aligned_cols=222  Identities=11%  Similarity=0.060  Sum_probs=114.9

Q ss_pred             CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458          108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (389)
Q Consensus       108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  187 (389)
                      ....+..+.++|+|+.++++ .+|...||....         ....   ..+......|.+.+  .+++-..+..|.++.
T Consensus        31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~---------~r~k---~~G~g~~~vw~~~n--~yAv~~~~~~I~I~k   95 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALA---------WRNK---AFGSGLSFVWSSRN--RYAVLESSSTIKIYK   95 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTT---------TEEE---EEEE-SEEEE-TSS--EEEEE-TTS-EEEEE
T ss_pred             CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccC---------Cccc---ccCceeEEEEecCc--cEEEEECCCeEEEEE
Confidence            34457899999999999985 577888887433         1222   13455667888854  577777788999963


Q ss_pred             CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEE
Q 016458          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT  267 (389)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  267 (389)
                      --+......+      .....+..+-.    +.+|...+. +.|.+||..+. +.+..+...  +|..+.|++++.+++.
T Consensus        96 n~~~~~~k~i------~~~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~-~~i~~i~v~--~vk~V~Ws~~g~~val  161 (443)
T PF04053_consen   96 NFKNEVVKSI------KLPFSVEKIFG----GNLLGVKSS-DFICFYDWETG-KLIRRIDVS--AVKYVIWSDDGELVAL  161 (443)
T ss_dssp             TTEE-TT-----------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEE
T ss_pred             cCccccceEE------cCCcccceEEc----CcEEEEECC-CCEEEEEhhHc-ceeeEEecC--CCcEEEEECCCCEEEE
Confidence            2222221222      11112333332    566666554 48999999987 777777633  3899999999999998


Q ss_pred             EecCCeEEEEECCCC-----------ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeec
Q 016458          268 GSDDGTCRLFDIRTG-----------HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG  336 (389)
Q Consensus       268 ~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  336 (389)
                      .+.+ .+.+++....           ...........     .|.+.+|..+  .++-.+.. .+.-  +-.|+.. .+ 
T Consensus       162 ~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~-----~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~-~i-  228 (443)
T PF04053_consen  162 VTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISE-----RIKSGCWVED--CFIYTTSN-HLKY--LVNGETG-II-  228 (443)
T ss_dssp             E-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S-------SEEEEETT--EEEEE-TT-EEEE--EETTEEE-EE-
T ss_pred             EeCC-eEEEEEecchhcccccccCchhceEEEEEecc-----eeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc-eE-
Confidence            8766 6777664432           01222221111     3888888765  33333343 5655  3333322 22 


Q ss_pred             CcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          337 SLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       337 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                         ..-+.++.=+.+.+....+.....|+.+..    +.+..
T Consensus       229 ---~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~----~~ld~  263 (443)
T PF04053_consen  229 ---AHLDKPLYLLGYLPKENRLYLIDRDGNVIS----YELDL  263 (443)
T ss_dssp             ---EE-SS--EEEEEETTTTEEEEE-TT--EEE----EE--H
T ss_pred             ---EEcCCceEEEEEEccCCEEEEEECCCCEEE----EEECH
Confidence               112346666777776778888888888877    65543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.46  E-value=0.00021  Score=61.58  Aligned_cols=242  Identities=18%  Similarity=0.211  Sum_probs=131.2

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeC-----------------CCcEEEEEECCCCcEEEEecC
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP-----------------CAWVMTCAFSPTGQSVACGGL  129 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~~  129 (389)
                      ...+....|||+|+.+|... ++.|.+++..++...+.....                 -+.-..+.|||++++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            66799999999999998875 568999998777433222111                 112356889999999887643


Q ss_pred             C-CcEEEE-----------------------------------eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcE
Q 016458          130 D-SVCSIF-----------------------------------NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH  173 (389)
Q Consensus       130 d-g~i~vw-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  173 (389)
                      | ..|..+                                   ++.+++..  .+........-...+..+.|.+++..+
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~--~~~~~~~~~~~~~yl~~v~W~~d~~~l  198 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT--ELDPPNSLNPQDYYLTRVGWSPDGKRL  198 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC--EE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE--EeeeccccCCCccCcccceecCCCcEE
Confidence            2 222222                                   22221100  000000012234567888999987323


Q ss_pred             EEE-eeC---CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee-CCCCcEEEEeeCCCceEEEeCCCCCcceeEEee
Q 016458          174 LIT-SSG---DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG  248 (389)
Q Consensus       174 l~~-~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  248 (389)
                      ++. ...   ...+.++|..++......... ...--..-....+. +.+..++.....+|--+||-+.........+..
T Consensus       199 ~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~  277 (353)
T PF00930_consen  199 WVQWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTS  277 (353)
T ss_dssp             EEEEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-
T ss_pred             EEEEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecccc
Confidence            332 222   235677788776554433211 11222233455554 656777777778886666555444344455555


Q ss_pred             eccceEE-EEEecCCCEEE-EEecC----CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec
Q 016458          249 HEGDVNT-VKFFPDGNRFG-TGSDD----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (389)
Q Consensus       249 ~~~~i~~-~~~~~~~~~l~-~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (389)
                      ..-.|.. +.++++++.|+ ++..+    ..|...++..+..+..+......     -..+.|||+|++++....
T Consensus       278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~-----~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD-----HYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST-----TEEEEE-TTSSEEEEEEE
T ss_pred             CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC-----ceEEEECCCCCEEEEEEc
Confidence            5556644 67788777654 44442    24666666623444444443332     158999999998876544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.45  E-value=1.2e-05  Score=72.56  Aligned_cols=110  Identities=13%  Similarity=0.153  Sum_probs=83.1

Q ss_pred             EEEEEECCCCcEEEEecC----CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458          112 VMTCAFSPTGQSVACGGL----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (389)
Q Consensus       112 v~~~~~~~~~~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  187 (389)
                      -+-..|+|...++++++.    .|.|.||--.....      ......   -.+++++|+|.. -.|+.|-.-|.+.+|.
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPq------r~Vt~P---~hatSLCWHpe~-~vLa~gwe~g~~~v~~   87 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQ------RDVTYP---VHATSLCWHPEE-FVLAQGWEMGVSDVQK   87 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEecCCCCC------cccccc---eehhhhccChHH-HHHhhccccceeEEEe
Confidence            344679999999888754    57888885433111      111112   235669999975 6777888889999999


Q ss_pred             CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCC
Q 016458          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  237 (389)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  237 (389)
                      ..+.+.....     ..|..+|..+.|++ ++..++++..-|.+.+|...
T Consensus        88 ~~~~e~htv~-----~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   88 TNTTETHTVV-----ETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cCCceeeeec-----cCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence            8887766665     68999999999999 88999999999999999765

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.43  E-value=0.00041  Score=57.63  Aligned_cols=224  Identities=15%  Similarity=0.133  Sum_probs=125.8

Q ss_pred             EECCCCcE-EEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE
Q 016458          116 AFSPTGQS-VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT  194 (389)
Q Consensus       116 ~~~~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  194 (389)
                      .|.++... +.+--..+.|.-|+..++.        ...+. +.+.+.++.....+ ..|+++...  +.+++.+++...
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~--------~~~~~-~p~~~~~~~~~d~~-g~Lv~~~~g--~~~~~~~~~~~~   98 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGK--------KRVFP-SPGGFSSGALIDAG-GRLIACEHG--VRLLDPDTGGKI   98 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCc--------eEEEE-CCCCcccceeecCC-CeEEEEccc--cEEEeccCCcee
Confidence            46666664 4444557778888876532        22222 23334444444443 344444332  556666655553


Q ss_pred             EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-----------CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCC
Q 016458          195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN  263 (389)
Q Consensus       195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  263 (389)
                      ..+............+.+.+.| ++.+.++...           -|.|+-+|. . ....+.+..+-..-+.++||||++
T Consensus        99 t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~-g~~~~l~~~~~~~~NGla~SpDg~  175 (307)
T COG3386          99 TLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-D-GGVVRLLDDDLTIPNGLAFSPDGK  175 (307)
T ss_pred             EEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-C-CCEEEeecCcEEecCceEECCCCC
Confidence            3332221122334566777787 5655554333           133444443 2 245555555555668899999998


Q ss_pred             EEEEEec-CCeEEEEECCC--Cceee---EeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC-cEEEEEcccceEEEeec
Q 016458          264 RFGTGSD-DGTCRLFDIRT--GHQLQ---VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLG  336 (389)
Q Consensus       264 ~l~~~~~-dg~i~i~d~~~--~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~  336 (389)
                      .|+.+.. .+.|.-|++..  +..-.   ....   .......-.++...+|.+.+++..+| .|.+|+.. ++.+..+ 
T Consensus       176 tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~---~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i-  250 (307)
T COG3386         176 TLYVADTPANRIHRYDLDPATGPIGGRRGFVDF---DEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI-  250 (307)
T ss_pred             EEEEEeCCCCeEEEEecCcccCccCCcceEEEc---cCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE-
Confidence            8877765 47888887762  11111   1111   11112345677888888776555554 89999988 8888887 


Q ss_pred             CcCCCCCCCeeEEEEC-CCCCeEEeee
Q 016458          337 SLQNSHEGRITCLGLS-ADGSALCTGS  362 (389)
Q Consensus       337 ~~~~~~~~~v~~~~~~-~~~~~l~~~~  362 (389)
                         ......+++++|- ++.+.|...+
T Consensus       251 ---~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         251 ---KLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             ---ECCCCCCccceEeCCCcCEEEEEe
Confidence               3444678888885 4445554443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.43  E-value=3.8e-05  Score=66.86  Aligned_cols=189  Identities=16%  Similarity=0.157  Sum_probs=112.3

Q ss_pred             ecccccceEEEEEeeCCCcEEEEeeCC---CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCc
Q 016458          154 LSGHKGYVSCCQYVPDEDTHLITSSGD---QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST  230 (389)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  230 (389)
                      +......+..-.|+|++..+.+..-..   ..+.++|+.++......      .....-..-.|+|+...++++...||.
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~~g~~~~P~fspDG~~l~f~~~rdg~  261 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NFNGNNGAPAFSPDGSKLAFSSSRDGS  261 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee------ccCCccCCccCCCCCCEEEEEECCCCC
Confidence            333445566678888886544443222   45999999998777665      234445566899966667777777776


Q ss_pred             eEE--EeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec-CCe--EEEEECCCCceeeEeeccCCCCCCCCeeEEEe
Q 016458          231 ARL--WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGT--CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF  305 (389)
Q Consensus       231 i~i--~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (389)
                      ..|  +|+...  ....+....+.-..-.|+|||++++..+. .|.  |.+++...... ..+......     -..-.|
T Consensus       262 ~~iy~~dl~~~--~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~-----~~~p~~  333 (425)
T COG0823         262 PDIYLMDLDGK--NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG-----NSNPVW  333 (425)
T ss_pred             ccEEEEcCCCC--cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC-----CcCccC
Confidence            554  566544  34444433333346789999999887664 443  66677665544 333222222     125679


Q ss_pred             CCCCCEEEEEec-CCc--EEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458          306 SISGRLLFAGYS-NGD--CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  361 (389)
Q Consensus       306 ~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  361 (389)
                      +|||++++..+. +|.  |.+.|+.++.....+     .+......-.|.++|..+...
T Consensus       334 SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l-----t~~~~~e~ps~~~ng~~i~~~  387 (425)
T COG0823         334 SPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL-----TSTYLNESPSWAPNGRMIMFS  387 (425)
T ss_pred             CCCCCEEEEEeccCCceeeEEeccCCCCcEEEc-----cccccCCCCCcCCCCceEEEe
Confidence            999998887764 344  666776665533333     222223344455665554443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.43  E-value=0.00034  Score=59.48  Aligned_cols=186  Identities=12%  Similarity=0.157  Sum_probs=107.2

Q ss_pred             CcEEEEeeC----------CCeEEEEeCCCC----eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeC
Q 016458          171 DTHLITSSG----------DQTCVLWDITTG----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT  236 (389)
Q Consensus       171 ~~~l~~~~~----------dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  236 (389)
                      ..+++.|+.          .|.|.++++...    ..+....   .....++|++++-.  ++. |+++ .++.|.+|++
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~--~~~-lv~~-~g~~l~v~~l  114 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH---STEVKGPVTAICSF--NGR-LVVA-VGNKLYVYDL  114 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEE--TTE-EEEE-ETTEEEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhh--CCE-EEEe-ecCEEEEEEc
Confidence            366776653          299999999984    1222211   13457789999887  444 4333 3589999999


Q ss_pred             CCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCC-CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE
Q 016458          237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG  315 (389)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  315 (389)
                      .... .+.....+..++...+....++++++|..-..+.++..+. ...+..+....   ....++++.|-++++.++++
T Consensus       115 ~~~~-~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~---~~~~v~~~~~l~d~~~~i~~  190 (321)
T PF03178_consen  115 DNSK-TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDY---QPRWVTAAEFLVDEDTIIVG  190 (321)
T ss_dssp             ETTS-SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEES---S-BEEEEEEEE-SSSEEEEE
T ss_pred             cCcc-cchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecC---CCccEEEEEEecCCcEEEEE
Confidence            8773 2333333434334444444467999999888888875544 22233333222   12348888888666799999


Q ss_pred             ecCCcEEEEEccc-------ce-EEEeecCcCCCCCCCeeEE---EECCC--CC------eEEeeeCCCeeEE
Q 016458          316 YSNGDCYVWDTLL-------AK-VVLNLGSLQNSHEGRITCL---GLSAD--GS------ALCTGSWDTNLKV  369 (389)
Q Consensus       316 ~~dg~i~i~d~~~-------~~-~~~~~~~~~~~~~~~v~~~---~~~~~--~~------~l~~~~~dg~i~i  369 (389)
                      +.+|.+.++....       +. .+.....  -.....|+++   ++.|.  +.      .++.++.+|.|.+
T Consensus       191 D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~--f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  191 DKDGNLFVLRYNPEIPNSRDGDPKLERISS--FHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             ETTSEEEEEEE-SS-SSTTTTTTBEEEEEE--EE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             cCCCeEEEEEECCCCcccccccccceeEEE--EECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            9999999998762       11 1111110  1234567777   55552  22      3888889999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.42  E-value=5.4e-05  Score=65.23  Aligned_cols=208  Identities=10%  Similarity=0.098  Sum_probs=113.9

Q ss_pred             cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEee--------CCCcEEEEEECC-----CC-
Q 016458           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL--------PCAWVMTCAFSP-----TG-  121 (389)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~--------~~~~v~~~~~~~-----~~-  121 (389)
                      .+.+...+....++|++++.|.=| ++|.|..+|.+.|.|++....+..-..        ....++++.|.-     |+ 
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            466777777889999999998555 999999999999999987777665332        124578888852     33 


Q ss_pred             --cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEe-eCC-------------------CcEEEEeeC
Q 016458          122 --QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV-PDE-------------------DTHLITSSG  179 (389)
Q Consensus       122 --~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-------------------~~~l~~~~~  179 (389)
                        -.+++|+..|.+.+|.+..................+.++|..+... .+.                   -.-++....
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence              5688999999999998853111111111222223455666665533 211                   012444555


Q ss_pred             CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee----CCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee----cc
Q 016458          180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS----GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----EG  251 (389)
Q Consensus       180 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~  251 (389)
                      +..++++...+.+.....     .........+.+-    ...+..|++-..+|.+++|.+... +.+......    ..
T Consensus       234 e~~irv~~~~~~k~~~K~-----~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-kei~~~~l~~~~d~~  307 (395)
T PF08596_consen  234 ESDIRVFKPPKSKGAHKS-----FDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-KEIKSVSLPPPLDSR  307 (395)
T ss_dssp             SSEEEEE-TT---EEEEE------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HH
T ss_pred             ccceEEEeCCCCccccee-----eccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-hHhhcccCCCccccc
Confidence            778999999888776655     2121222333342    125667888889999999999876 444444432    12


Q ss_pred             ceEEEEEecCCCEEEEEec
Q 016458          252 DVNTVKFFPDGNRFGTGSD  270 (389)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~  270 (389)
                      .+...+++++|+.++-.+.
T Consensus       308 ~~~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  308 RLSSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             HHTT-EE-TTS-EEEE-SS
T ss_pred             cccccEECCCCCEEEEeCc
Confidence            3445666777776655543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.41  E-value=0.0011  Score=58.04  Aligned_cols=71  Identities=24%  Similarity=0.257  Sum_probs=60.5

Q ss_pred             CeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      .+.+++++|+...++.|+.||.|.+||...+.....      ...-.++.++|+|+|..+++|+..|.+.+    ||+.-
T Consensus       261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~------ka~~~P~~iaWHp~gai~~V~s~qGelQ~----FD~AL  330 (545)
T PF11768_consen  261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA------KAEFIPTLIAWHPDGAIFVVGSEQGELQC----FDMAL  330 (545)
T ss_pred             cceEEecCcccceEEEEecCCeEEEEEcCCCeeeee------eecccceEEEEcCCCcEEEEEcCCceEEE----EEeec
Confidence            589999999999999999999999999876643322      23346789999999999999999999999    99865


Q ss_pred             C
Q 016458          379 G  379 (389)
Q Consensus       379 ~  379 (389)
                      +
T Consensus       331 s  331 (545)
T PF11768_consen  331 S  331 (545)
T ss_pred             C
Confidence            4

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.38  E-value=1.7e-05  Score=73.11  Aligned_cols=143  Identities=16%  Similarity=0.234  Sum_probs=96.1

Q ss_pred             cEEEE-eeCCCeEEEEeCCCCeeEEEecCcccCCCC-CCeeEEEeeC----CCCcEEEEeeCCCceEEEeCCCCCcceeE
Q 016458          172 THLIT-SSGDQTCVLWDITTGLRTSVFGGEFQSGHT-ADVLSVSISG----SNSRMFVSGSCDSTARLWDTRVASRAVRT  245 (389)
Q Consensus       172 ~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  245 (389)
                      ++++. ......|+-.|++.|+.+..+.     .+. .+|..++-..    ..+.-.+.|-.+..+..||.|..+..+..
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~-----~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~  568 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWK-----VHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD  568 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEee-----cCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence            34333 3456889999999999999984     333 2355554321    12334567788899999999976422221


Q ss_pred             Ee----eeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcE
Q 016458          246 FH----GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC  321 (389)
Q Consensus       246 ~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  321 (389)
                      -.    .......|++-+.+| +||+|+.+|.|++|| +.+....+....    -..+|..+..+.||++|++.+.. .+
T Consensus       569 ~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp~----lG~pI~~iDvt~DGkwilaTc~t-yL  641 (794)
T PF08553_consen  569 SQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALPG----LGDPIIGIDVTADGKWILATCKT-YL  641 (794)
T ss_pred             ccccccccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhcCCC----CCCCeeEEEecCCCcEEEEeecc-eE
Confidence            11    234467788877666 699999999999999 444443333322    23479999999999999887655 67


Q ss_pred             EEEEc
Q 016458          322 YVWDT  326 (389)
Q Consensus       322 ~i~d~  326 (389)
                      .+++.
T Consensus       642 lLi~t  646 (794)
T PF08553_consen  642 LLIDT  646 (794)
T ss_pred             EEEEE
Confidence            77764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=0.0014  Score=57.09  Aligned_cols=265  Identities=18%  Similarity=0.196  Sum_probs=163.3

Q ss_pred             cEEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE-EecCCCcEEEEeCCCCCCCCC
Q 016458           69 KVYSLDWTSERNRIVSAS-QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDG  146 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~  146 (389)
                      ....+...+++..+.... ....+...+...................++.++.+..++ +...++.|.+.|.....    
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~----  107 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT----  107 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccc----
Confidence            455677888885444333 222455555442211111222213456778888887554 44556899999966533    


Q ss_pred             CCcceeeecccccceEEEEEeeCCCcEEEEee--CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEE
Q 016458          147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS--GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS  224 (389)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  224 (389)
                         ....... ......+++.+++....++-.  .++.+.+.|..++.......     .-..+ ..+++.|.....+++
T Consensus       108 ---~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-----vG~~P-~~~a~~p~g~~vyv~  177 (381)
T COG3391         108 ---VLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-----VGNTP-TGVAVDPDGNKVYVT  177 (381)
T ss_pred             ---eeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-----cCCCc-ceEEECCCCCeEEEE
Confidence               2222111 125677899999865555555  37999999999988888752     22233 889999944445666


Q ss_pred             eeCCCceEEEeCCCCCccee-E---EeeeccceEEEEEecCCCEEEEEecC---CeEEEEECCCCceeeEeeccCCCCCC
Q 016458          225 GSCDSTARLWDTRVASRAVR-T---FHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEI  297 (389)
Q Consensus       225 ~~~dg~i~i~d~~~~~~~~~-~---~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~  297 (389)
                      -..++.|.+.|.... .... .   ...-......+.++|++.++.+....   +.+...|..++...........   .
T Consensus       178 ~~~~~~v~vi~~~~~-~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~---~  253 (381)
T COG3391         178 NSDDNTVSVIDTSGN-SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS---G  253 (381)
T ss_pred             ecCCCeEEEEeCCCc-ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc---C
Confidence            668899999997654 2221 0   01122334678999999977666544   5899999988776655222111   1


Q ss_pred             CCeeEEEeCCCCCEEEEEecC-CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458          298 PHVTSIAFSISGRLLFAGYSN-GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (389)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (389)
                       ....+.++|+|.++++.... +.+.+.|..+............. ...+..+++.+
T Consensus       254 -~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~-~~~~~~~~~~~  308 (381)
T COG3391         254 -APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEA-LGEPVSIAISP  308 (381)
T ss_pred             -CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccc-cccceecccee
Confidence             24678899999998888544 88999999888877766432221 12344555544

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.35  E-value=5.2e-06  Score=73.08  Aligned_cols=147  Identities=15%  Similarity=0.186  Sum_probs=100.8

Q ss_pred             eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEe
Q 016458          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY  288 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  288 (389)
                      +.--+++. ...+++.|+.-|.+++|+-..+........+..+.+..+..+++..++|.|+..|.|.++-+....+....
T Consensus        36 v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~  114 (726)
T KOG3621|consen   36 VKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD  114 (726)
T ss_pred             EEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence            33333443 77899999999999999977653333333334556777888999999999999999999998775443332


Q ss_pred             ec-cCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce----EEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458          289 YQ-QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK----VVLNLGSLQNSHEGRITCLGLSADGSALCTG  361 (389)
Q Consensus       289 ~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  361 (389)
                      .. +....+...|++++|++++..+++|...|.|..-.+....    ....+    ....+.|..+... ++.+|++.
T Consensus       115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i----l~~ds~IVQlD~~-q~~LLVSt  187 (726)
T KOG3621|consen  115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI----LSEDSEIVQLDYL-QSYLLVST  187 (726)
T ss_pred             eeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhcccccee----eccCcceEEeecc-cceehHhh
Confidence            22 2222355679999999999999999999999988887621    11111    2345677777765 34444443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.33  E-value=0.0011  Score=55.11  Aligned_cols=236  Identities=13%  Similarity=0.177  Sum_probs=130.2

Q ss_pred             CCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec
Q 016458          119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (389)
Q Consensus       119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  198 (389)
                      ..++.|+.|+.+| +.+++.....      ......  +...|..+...++-+ .+++- .|+.+.++++..-.......
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~------~~~~i~--~~~~I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~~~~   73 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPS------KPTRIL--KLSSITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVSTSA   73 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCc------cceeEe--ecceEEEEEEecccC-EEEEE-cCCccEEEEchhhccccccc
Confidence            4678899999888 8999983221      011221  223399999999763 33333 35999999987654443210


Q ss_pred             C---------cccCCCCCCeeEEE-eeCCCCcEEEEeeCCCceEEEeCCCCC----cceeEEeeeccceEEEEEecCCCE
Q 016458          199 G---------EFQSGHTADVLSVS-ISGSNSRMFVSGSCDSTARLWDTRVAS----RAVRTFHGHEGDVNTVKFFPDGNR  264 (389)
Q Consensus       199 ~---------~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~  264 (389)
                      .         .........+...+ .....+...++......|.+|......    ...+.+. -...+..++|.  ++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~  150 (275)
T PF00780_consen   74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNK  150 (275)
T ss_pred             cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCE
Confidence            0         00012233455554 112233333444445689988877531    2333333 34678899998  557


Q ss_pred             EEEEecCCeEEEEECCCCceeeEeeccCCC-------CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC
Q 016458          265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS  337 (389)
Q Consensus       265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  337 (389)
                      ++.|..+ ...+.|+.++.....+......       ....++..+..+ ++.+|++-  |..-.+.|. .|++..... 
T Consensus       151 i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~-  224 (275)
T PF00780_consen  151 ICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKST-  224 (275)
T ss_pred             EEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccE-
Confidence            7777755 5788999976655444222111       112234444443 45566543  333334443 443332110 


Q ss_pred             cCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          338 LQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       338 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                        -.-...+.++++.  ..||++.+. +.|-|    |++.+|++..
T Consensus       225 --i~W~~~p~~~~~~--~pyli~~~~-~~iEV----~~~~~~~lvQ  261 (275)
T PF00780_consen  225 --IQWSSAPQSVAYS--SPYLIAFSS-NSIEV----RSLETGELVQ  261 (275)
T ss_pred             --EEcCCchhEEEEE--CCEEEEECC-CEEEE----EECcCCcEEE
Confidence              1123355666664  347777665 45999    9999998754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.32  E-value=0.002  Score=57.09  Aligned_cols=246  Identities=14%  Similarity=0.129  Sum_probs=130.2

Q ss_pred             EEEEEEcCCCCeEEEE-ecCC----cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCC-----------cE
Q 016458           70 VYSLDWTSERNRIVSA-SQDG----RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS-----------VC  133 (389)
Q Consensus        70 v~~~~~~~~~~~l~~~-~~dg----~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~i  133 (389)
                      +....++|++++||.+ +..|    .++++|+.+++.+...-.. .....+.|.++++.|+....+.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            4467899999988854 3333    5999999999766532111 1123499999988876654332           37


Q ss_pred             EEEeCCCCCCCCCCCcceeeecccccc--eEEEEEeeCCCcEEEEeeCC---CeEEEEeCCCC-----eeEEEecCcccC
Q 016458          134 SIFNLNSPTDKDGNLPVSRMLSGHKGY--VSCCQYVPDEDTHLITSSGD---QTCVLWDITTG-----LRTSVFGGEFQS  203 (389)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~-----~~~~~~~~~~~~  203 (389)
                      +.|.+.++...     -...+......  ...+..++++..+++.....   ..+.+.|+..+     ......     .
T Consensus       205 ~~~~~gt~~~~-----d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~-----~  274 (414)
T PF02897_consen  205 YRHKLGTPQSE-----DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS-----P  274 (414)
T ss_dssp             EEEETTS-GGG------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE-----E
T ss_pred             EEEECCCChHh-----CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe-----C
Confidence            77887764321     12233332222  56788888875444444333   45888888874     222222     2


Q ss_pred             CCCCCeeEEEeeCCCCcEEEEee---CCCceEEEeCCCCCc--ceeEEeeeccceEEEEEecCCCEEEEE-ecCC--eEE
Q 016458          204 GHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASR--AVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDG--TCR  275 (389)
Q Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg--~i~  275 (389)
                      ...+....+...  ++.+++...   ..+.|.-.++.....  ....+..+...+.-..+...+++|+.. ..++  .|+
T Consensus       275 ~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~  352 (414)
T PF02897_consen  275 REDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLR  352 (414)
T ss_dssp             SSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred             CCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEE
Confidence            222333334333  444444433   245777778876632  122555555543333333445555544 4444  588


Q ss_pred             EEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec----CCcEEEEEcccceEE
Q 016458          276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS----NGDCYVWDTLLAKVV  332 (389)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~  332 (389)
                      ++++..+...........    ..+..+...++++.+.....    -+.++.||+.+++..
T Consensus       353 v~~~~~~~~~~~~~~p~~----g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  353 VYDLDDGKESREIPLPEA----GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             EEETT-TEEEEEEESSSS----SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             EEECCCCcEEeeecCCcc----eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            999883334433333221    12566665666664433222    357888888877654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.29  E-value=0.0015  Score=54.35  Aligned_cols=231  Identities=14%  Similarity=0.116  Sum_probs=128.8

Q ss_pred             CCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcce--e--
Q 016458           77 SERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS--R--  152 (389)
Q Consensus        77 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--~--  152 (389)
                      ..++.|+.|+.+| +.+++.........+.. ...|..+...++-+.|++-+ |+.+.++++..-..........  .  
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~-~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK-LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEee-cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            3567999999998 99999833332222222 22399999999877776664 5999999998744221110000  0  


Q ss_pred             ---eecccccceEEEE--EeeCCCcEEEEeeCCCeEEEEeCCCC-----eeEEEecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458          153 ---MLSGHKGYVSCCQ--YVPDEDTHLITSSGDQTCVLWDITTG-----LRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (389)
Q Consensus       153 ---~~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  222 (389)
                         ........+...+  -...+ ...+.......|.+|.....     .....+      .....+.+++|.+   +.+
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~------~lp~~~~~i~~~~---~~i  151 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKILIYEWNDPRNSFSKLLKEI------SLPDPPSSIAFLG---NKI  151 (275)
T ss_pred             cccccccccCCeeEEeecccccc-ceEEEEEECCEEEEEEEECCcccccceeEEE------EcCCCcEEEEEeC---CEE
Confidence               0111122333333  11223 33444444558888887653     233333      3457889999983   556


Q ss_pred             EEeeCCCceEEEeCCCCCcceeEEeee------------ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceee--Ee
Q 016458          223 VSGSCDSTARLWDTRVASRAVRTFHGH------------EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ--VY  288 (389)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~  288 (389)
                      +.|.. ....+.|+.+. .....+...            ..++..+... ++.+|++-  |..-.+.|. .|+...  .+
T Consensus       152 ~v~~~-~~f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i  225 (275)
T PF00780_consen  152 CVGTS-KGFYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTI  225 (275)
T ss_pred             EEEeC-CceEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEE
Confidence            66664 45888898855 222222111            1233333333 45555543  333334443 344333  22


Q ss_pred             eccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458          289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (389)
                      ....      ...++++  ...||++.+.+ .|.||++.+++.+..+
T Consensus       226 ~W~~------~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i  263 (275)
T PF00780_consen  226 QWSS------APQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTI  263 (275)
T ss_pred             EcCC------chhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEE
Confidence            2211      2456666  34588777665 5999999999998887

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=1e-05  Score=70.36  Aligned_cols=94  Identities=17%  Similarity=0.206  Sum_probs=77.7

Q ss_pred             cceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCee-EEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458          251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT-SIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (389)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (389)
                      ..+..+.|+|.-.++|.+..+|.|.+..+. .+.+..+..+...     ++ +++|.|||+.|++|-.||+|++.|..++
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~-----v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGEN-----VTASLCWRPDGKLLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCc-----cceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence            357789999999999999999999999988 7777777644333     45 9999999999999999999999999998


Q ss_pred             eEEEeecCcCCCCCCCeeEEEECC
Q 016458          330 KVVLNLGSLQNSHEGRITCLGLSA  353 (389)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~~~~~~  353 (389)
                      ..+....   ......|+++.|++
T Consensus        95 ~~l~~~~---~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   95 GRLVSFL---FSVETDISKGIWDR  115 (665)
T ss_pred             Cceeccc---cccccchheeeccc
Confidence            8887642   34556788888863

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.21  E-value=6.9e-05  Score=69.26  Aligned_cols=145  Identities=17%  Similarity=0.128  Sum_probs=95.2

Q ss_pred             CCcEEEEe-eCCCceEEEeCCCCCcceeEEeeeccc-eEEEEEec-----CCCEEEEEecCCeEEEEECCCCceeeEeec
Q 016458          218 NSRMFVSG-SCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFP-----DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ  290 (389)
Q Consensus       218 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~-i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  290 (389)
                      +.++|+.. .....|+-.|+..+ +.+..+..|... |..++-..     ...-.+.|-.+..+..||.|-.........
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~G-KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~  570 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERG-KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ  570 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCC-cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence            44554443 35678999999988 888888877654 55443221     123456677888999999986432111111


Q ss_pred             cCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458          291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK  368 (389)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  368 (389)
                      .+.-......+|++-+.+| +||+|+.+|.|++||- .+..-++.   ..+...+|.+|..+.||++|++.+..-.+.
T Consensus       571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~---lp~lG~pI~~iDvt~DGkwilaTc~tyLlL  643 (794)
T PF08553_consen  571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTA---LPGLGDPIIGIDVTADGKWILATCKTYLLL  643 (794)
T ss_pred             ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhc---CCCCCCCeeEEEecCCCcEEEEeecceEEE
Confidence            1111222347777777666 7899999999999994 33332222   256778999999999999988777554443

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.17  E-value=0.00024  Score=48.08  Aligned_cols=101  Identities=14%  Similarity=0.120  Sum_probs=68.5

Q ss_pred             EEEEEEcC---CC-CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458           70 VYSLDWTS---ER-NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (389)
Q Consensus        70 v~~~~~~~---~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (389)
                      |++|++..   +| +.|++|+.|..|++|+-  .+.+..+... +.|++++-... ..++.+..+|+|-+|+-...    
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R----   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQR----   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcce----
Confidence            56666654   33 58999999999999983  3566666655 45777776655 66888999999999986542    


Q ss_pred             CCCcceeeecccccceEEEEEee---CCCcEEEEeeCCCeEE
Q 016458          146 GNLPVSRMLSGHKGYVSCCQYVP---DEDTHLITSSGDQTCV  184 (389)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~  184 (389)
                           .-..+. +..+.++.+..   +|...|++|-.+|.|-
T Consensus        74 -----lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 -----LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -----eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence                 122222 22355555543   3445799999999874

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=98.16  E-value=3.5e-06  Score=64.00  Aligned_cols=143  Identities=18%  Similarity=0.169  Sum_probs=87.7

Q ss_pred             EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe
Q 016458          221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV  300 (389)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i  300 (389)
                      .+...+.+|.|+-++++......+.-.-+.....-+.   -+..+++|+.+|.|.+|.................    .|
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e----~i  104 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE----SI  104 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcceeecc---cCceEEeecccceEEEecCCccchHHHhhhcccc----cc
Confidence            3445567888888888755333333222332211122   3456999999999999987732221111111111    12


Q ss_pred             -eEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCC-CCeeEEEECCCCCeEEee--eCCCeeEEeecceec
Q 016458          301 -TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE-GRITCLGLSADGSALCTG--SWDTNLKVNLGFWRV  376 (389)
Q Consensus       301 -~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~i~~~~W~~  376 (389)
                       +.+.--.++.+..++..+|.|+.|++...+.+...    ..|. .++..+..+..+++++.+  |.|..++.    |++
T Consensus       105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~----g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~----W~v  176 (238)
T KOG2444|consen  105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV----GQHNFESGEELIVVGSDEFLKIADTSHDRVLKK----WNV  176 (238)
T ss_pred             eeccccccccceeEEeccCCceeeeccccCceeeee----ccccCCCcceeEEecCCceEEeeccccchhhhh----cch
Confidence             22222335568899999999999999988888777    5666 556666666666667666  67777776    777


Q ss_pred             cc
Q 016458          377 QE  378 (389)
Q Consensus       377 ~~  378 (389)
                      ..
T Consensus       177 e~  178 (238)
T KOG2444|consen  177 EK  178 (238)
T ss_pred             hh
Confidence            54

>smart00320 WD40 WD40 repeats

Probab=98.16  E-value=6.9e-06  Score=44.68  Aligned_cols=38  Identities=34%  Similarity=0.676  Sum_probs=34.4

Q ss_pred             eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEe
Q 016458           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN   95 (389)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~   95 (389)
                      .+...+.+|...|.++.|++++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45667788999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.12  E-value=0.0078  Score=56.16  Aligned_cols=290  Identities=13%  Similarity=0.097  Sum_probs=154.8

Q ss_pred             cCcEEEEEEcCCC------CeEEEEecCCcEEEEe-CCCCCeeEEEeeC----CCcEEEEEECCCCcEEEEecCCCcEEE
Q 016458           67 AGKVYSLDWTSER------NRIVSASQDGRLIVWN-ALTSQKTHAIKLP----CAWVMTCAFSPTGQSVACGGLDSVCSI  135 (389)
Q Consensus        67 ~~~v~~~~~~~~~------~~l~~~~~dg~v~iw~-~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~v  135 (389)
                      ...|.|++++|-|      ++++.|..+..+.+-- ..+...+......    ...|.-..+-.+..+|.++..||.+..
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~  609 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY  609 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence            4579999999842      2788888876665543 2333333222111    134556666667899999999999988


Q ss_pred             EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE-Ee
Q 016458          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV-SI  214 (389)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~-~~  214 (389)
                      |.++.....   ....+...--..++.--.|+..+.+.+++ ..|+-..+|..+..-....+.       -..+..+ .|
T Consensus       610 fv~d~~tg~---lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa-~sdrP~viY~~n~kLv~spls-------~kev~~~c~f  678 (1096)
T KOG1897|consen  610 FVLDINTGQ---LSDRKKVTLGTQPISLRTFSSKSRTAVFA-LSDRPTVIYSSNGKLVYSPLS-------LKEVNHMCPF  678 (1096)
T ss_pred             EEEEcccce---EccccccccCCCCcEEEEEeeCCceEEEE-eCCCCEEEEecCCcEEEeccc-------hHHhhhhccc
Confidence            877653311   11111111223455555676666444444 445555566544333222221       0111111 11


Q ss_pred             e-CCCCcEEEEeeCCCceEEEeCCCCCcc-eeEEeeeccceEEEEEecCCCEEEEEecC--------------CeEEEEE
Q 016458          215 S-GSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDD--------------GTCRLFD  278 (389)
Q Consensus       215 ~-~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d  278 (389)
                      + +..+..++.+. .+.+.+.-++.-++. .++ -+-......+++.+....+.+.+.-              ..++++|
T Consensus       679 ~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irt-vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD  756 (1096)
T KOG1897|consen  679 NSDAYPDSLASAN-GGALTIGTIDEIQKLHIRT-VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLD  756 (1096)
T ss_pred             ccccCCceEEEec-CCceEEEEecchhhcceee-ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEec
Confidence            1 11233444443 456777766543222 233 2334456778887744444444321              1366777


Q ss_pred             CCCCceeeEeeccCCCCCCCCeeEEEeCCC-CCEEEEEec----------CCcEEEEEcccceEEEeecCcCCCCCCCee
Q 016458          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRIT  347 (389)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  347 (389)
                      -++.+.+........+ ....+.++.|..| +.++++|+.          .|.|.+|.+..+..+.....  ..-.+.+.
T Consensus       757 ~nTf~vl~~hef~~~E-~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e--~~v~Gav~  833 (1096)
T KOG1897|consen  757 QNTFEVLSSHEFERNE-TALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAE--TVVKGAVY  833 (1096)
T ss_pred             CCceeEEeeccccccc-eeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeee--eeecccee
Confidence            6665544433322211 1223555668877 678888863          58899998877444443311  22344555


Q ss_pred             EEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          348 CLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       348 ~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      ++..- +|++||.-  ...|++    ++..++
T Consensus       834 aL~~f-ngkllA~I--n~~vrL----ye~t~~  858 (1096)
T KOG1897|consen  834 ALVEF-NGKLLAGI--NQSVRL----YEWTTE  858 (1096)
T ss_pred             ehhhh-CCeEEEec--CcEEEE----EEcccc
Confidence            55432 57766644  568898    888777

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=0.00043  Score=59.57  Aligned_cols=142  Identities=17%  Similarity=0.178  Sum_probs=94.3

Q ss_pred             EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCE-------EEEEecCCeEEEEECCCCce-eeEeeccC
Q 016458          221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR-------FGTGSDDGTCRLFDIRTGHQ-LQVYYQQH  292 (389)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------l~~~~~dg~i~i~d~~~~~~-~~~~~~~~  292 (389)
                      +|..+.....++-.|+..+ +.+..+.-+.. |+-+.+.|+.+.       -+.|-.|..|.-||.+-... .......+
T Consensus       348 il~~~~~~~~l~klDIE~G-KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k  425 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERG-KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK  425 (644)
T ss_pred             EeeCCCCcCcceeeecccc-eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence            4455666678888899988 88888886665 777788775432       34566788999999884332 12222222


Q ss_pred             CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      .-.......|.+-..+| ++++|+.+|.|++||- .+..-.+..   .+...+|..+..+.||++|+..+..-.+.+
T Consensus       426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAl---PgLG~~I~hVdvtadGKwil~Tc~tyLlLi  497 (644)
T KOG2395|consen  426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTAL---PGLGDAIKHVDVTADGKWILATCKTYLLLI  497 (644)
T ss_pred             ccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcc---cccCCceeeEEeeccCcEEEEecccEEEEE
Confidence            11112224555554444 8999999999999997 444433332   678889999999999998877665444433

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=2.2e-05  Score=68.38  Aligned_cols=94  Identities=16%  Similarity=0.262  Sum_probs=76.5

Q ss_pred             CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEE-EEEECCCCcEEEEecCCCcEEEEeCCCCCCCCC
Q 016458           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVM-TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG  146 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  146 (389)
                      -.|.-+.|+|.-.++|++..+|.|.+..+. .+.+.+++.+...++ +++|.|||+.|++|-.||+|++.|...+...  
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l--   97 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL--   97 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce--
Confidence            357889999999999999999999999987 888899998888888 9999999999999999999999999986521  


Q ss_pred             CCcceeeecccccceEEEEEee
Q 016458          147 NLPVSRMLSGHKGYVSCCQYVP  168 (389)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~  168 (389)
                          ..........|.++-|.+
T Consensus        98 ----~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 ----VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ----eccccccccchheeeccc
Confidence                111223345666666653

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=98.02  E-value=0.0023  Score=55.29  Aligned_cols=80  Identities=23%  Similarity=0.209  Sum_probs=54.9

Q ss_pred             CeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC--------------CC-eEEeeeC
Q 016458          299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD--------------GS-ALCTGSW  363 (389)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~-~l~~~~~  363 (389)
                      .+.+++.+|++++.++...=|+|.++|+.++..+..++.+..+.-+-+....-...              .. +++-+-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            37889999999999998888999999999998888886443333222222211111              11 2344566


Q ss_pred             CCeeEEeecceecccCccc
Q 016458          364 DTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       364 dg~i~i~~~~W~~~~~~~~  382 (389)
                      -|.|-|    |.+..|.-+
T Consensus       389 Rg~lEv----W~~~~g~Rv  403 (415)
T PF14655_consen  389 RGILEV----WSMRQGPRV  403 (415)
T ss_pred             CCeEEE----EecCCCCEE
Confidence            889999    999988543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.00  E-value=0.0096  Score=52.83  Aligned_cols=249  Identities=15%  Similarity=0.130  Sum_probs=131.2

Q ss_pred             EEEEEECCCCcEEEEe-cCC----CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC------
Q 016458          112 VMTCAFSPTGQSVACG-GLD----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------  180 (389)
Q Consensus       112 v~~~~~~~~~~~l~~~-~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------  180 (389)
                      +....++|+++++|.+ +..    ..++++|+.+++.      +...+..  .....+.|.+++..++++...+      
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~------l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~  197 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF------LPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSD  197 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE------EEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC------cCCcccc--cccceEEEeCCCCEEEEEEeCccccccc
Confidence            4467899999998865 233    3599999988541      1112121  1223389999986655655333      


Q ss_pred             ----CeEEEEeCCCCeeE--EEecCcccCCCCCC-eeEEEeeCCCCcEEEE-eeCC---CceEEEeCCCC---CcceeEE
Q 016458          181 ----QTCVLWDITTGLRT--SVFGGEFQSGHTAD-VLSVSISGSNSRMFVS-GSCD---STARLWDTRVA---SRAVRTF  246 (389)
Q Consensus       181 ----g~i~iwd~~~~~~~--~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~-~~~d---g~i~i~d~~~~---~~~~~~~  246 (389)
                          ..|+.|.+.+....  ..+.    ...... ...+..++ ++++++. ....   ..+.+.|+...   ......+
T Consensus       198 ~~~~~~v~~~~~gt~~~~d~lvfe----~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l  272 (414)
T PF02897_consen  198 SGYPRQVYRHKLGTPQSEDELVFE----EPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL  272 (414)
T ss_dssp             CGCCEEEEEEETTS-GGG-EEEEC-----TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred             CCCCcEEEEEECCCChHhCeeEEe----ecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence                34788888776433  3331    122222 56788887 5566554 3332   34788888763   2344445


Q ss_pred             eeeccceEEEEEecCCCEEEEEe---cCCeEEEEECCCCce---eeEeeccCCCCCCCCeeEEEeCCCCCEEEEE-ecCC
Q 016458          247 HGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNG  319 (389)
Q Consensus       247 ~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg  319 (389)
                      ......+....-+..+.+++...   .++.|...++.....   ...+......   ..+..+..  .+.+|+.. ..++
T Consensus       273 ~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~---~~l~~~~~--~~~~Lvl~~~~~~  347 (414)
T PF02897_consen  273 SPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED---VSLEDVSL--FKDYLVLSYRENG  347 (414)
T ss_dssp             EESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS---EEEEEEEE--ETTEEEEEEEETT
T ss_pred             eCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc---eeEEEEEE--ECCEEEEEEEECC
Confidence            44444444333333444444332   346787888877653   2122222111   12444444  44455544 4444


Q ss_pred             --cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEe-eeC---CCeeEEeecceecccCcccCcc
Q 016458          320 --DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT-GSW---DTNLKVNLGFWRVQEGALSPWG  385 (389)
Q Consensus       320 --~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~---dg~i~i~~~~W~~~~~~~~~~~  385 (389)
                        .|+++++..+.....+.   ..-.+.|..+...+++..+.. .++   -+++..    +|+.++++..|.
T Consensus       348 ~~~l~v~~~~~~~~~~~~~---~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~----~d~~t~~~~~~k  412 (414)
T PF02897_consen  348 SSRLRVYDLDDGKESREIP---LPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYR----YDLATGELTLLK  412 (414)
T ss_dssp             EEEEEEEETT-TEEEEEEE---SSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEE----EETTTTCEEEEE
T ss_pred             ccEEEEEECCCCcEEeeec---CCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEE----EECCCCCEEEEE
Confidence              68899998344444443   233445666666665544322 221   256676    999999887663

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.97  E-value=0.0045  Score=47.80  Aligned_cols=139  Identities=15%  Similarity=0.177  Sum_probs=83.7

Q ss_pred             CCCeeEEEeeCCCCcEEEEeeC---------CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEE-EecCCeEE
Q 016458          206 TADVLSVSISGSNSRMFVSGSC---------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT-GSDDGTCR  275 (389)
Q Consensus       206 ~~~v~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~  275 (389)
                      ....+.-..+| ++++++-.-.         .|.++.|-..   ..+..+...-.--+.++|+.+.+.+.. -+.+-.|.
T Consensus       108 knR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~---h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  108 KNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAG---HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD  183 (310)
T ss_pred             hcccccCccCC-CCceeeeeeccccccccccccEEEEeccC---CCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence            34556666777 7777432222         2344444433   122222222233467889887776654 45566777


Q ss_pred             EEE--CCCCc-----eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeE
Q 016458          276 LFD--IRTGH-----QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  348 (389)
Q Consensus       276 i~d--~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  348 (389)
                      -||  ..++.     .+..+...... .....-.+++..+|++.++.-..|+|...|..+|+.+.++    .-....|++
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~-e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~ei----klPt~qits  258 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPF-ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEI----KLPTPQITS  258 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCc-CCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEE----EcCCCceEE
Confidence            777  44443     22222221111 1111345666778998888888999999999999999999    455788999


Q ss_pred             EEECC
Q 016458          349 LGLSA  353 (389)
Q Consensus       349 ~~~~~  353 (389)
                      ++|--
T Consensus       259 ccFgG  263 (310)
T KOG4499|consen  259 CCFGG  263 (310)
T ss_pred             EEecC
Confidence            99964

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.92  E-value=0.01  Score=50.32  Aligned_cols=245  Identities=13%  Similarity=0.083  Sum_probs=109.4

Q ss_pred             eCCCCCeeEEEeeCCCcEEEE-----EECCCCcEEEEec-CCC--cEEEEeCCCCCCCCCCCcceeeecccc-cceEEEE
Q 016458           95 NALTSQKTHAIKLPCAWVMTC-----AFSPTGQSVACGG-LDS--VCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQ  165 (389)
Q Consensus        95 ~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~l~~~~-~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~  165 (389)
                      |..+|..+..+......-..+     +|.++|+.|+.++ .+|  .+.+.|+.+++        ...+.... .......
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--------i~QLTdg~g~~~~g~~   87 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--------ITQLTDGPGDNTFGGF   87 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--------EEE---SS-B-TTT-E
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--------EEECccCCCCCccceE
Confidence            667777777766544433323     5677886665544 455  45666666643        22222221 2222455


Q ss_pred             EeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee-CCCCcEEEEeeC-----------------
Q 016458          166 YVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSC-----------------  227 (389)
Q Consensus       166 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~-----------------  227 (389)
                      +++++ +.++-...+..|+..|+.+.+....+     ......+-...|. +.+...++..-.                 
T Consensus        88 ~s~~~-~~~~Yv~~~~~l~~vdL~T~e~~~vy-----~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~  161 (386)
T PF14583_consen   88 LSPDD-RALYYVKNGRSLRRVDLDTLEERVVY-----EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREF  161 (386)
T ss_dssp             E-TTS-SEEEEEETTTEEEEEETTT--EEEEE-----E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHH
T ss_pred             EecCC-CeEEEEECCCeEEEEECCcCcEEEEE-----ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHH
Confidence            66776 45544555578899999998776665     3344444445554 224444332211                 


Q ss_pred             -----CCceEEEeCCCCCcceeEEeeeccceEEEEEecCC-CEEEEEec---CC-eEEEEECCC-CceeeEeeccCCCCC
Q 016458          228 -----DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSD---DG-TCRLFDIRT-GHQLQVYYQQHGENE  296 (389)
Q Consensus       228 -----dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~---dg-~i~i~d~~~-~~~~~~~~~~~~~~~  296 (389)
                           ...|.-.|+.++ + ...+......+..+.|+|.. .+|+.|.+   +. .-+||-+++ +.....+....   .
T Consensus       162 ~~a~p~~~i~~idl~tG-~-~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~---~  236 (386)
T PF14583_consen  162 YEARPHCRIFTIDLKTG-E-RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM---E  236 (386)
T ss_dssp             HHC---EEEEEEETTT----EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS------T
T ss_pred             HhhCCCceEEEEECCCC-c-eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC---C
Confidence                 123444566654 2 33444456678889999944 44554432   11 124554443 22333332221   1


Q ss_pred             CCCeeEEEeCCCCCEEEE-Ee-c---CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC
Q 016458          297 IPHVTSIAFSISGRLLFA-GY-S---NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  364 (389)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~-~~-~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  364 (389)
                      ...+..=-|.|||..|.- +. .   +..|.-+|..+++.....      .......+.-++||++++-=|.|
T Consensus       237 ~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~------~~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  237 GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM------EMPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE------EE-SEEEEEE-TTSSEEEEEE--
T ss_pred             CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE------eCCceeeeEEcCCCCEEEecCCC
Confidence            234666679999986554 22 2   335667788777654322      11234456667899877665554

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.91  E-value=0.0075  Score=48.43  Aligned_cols=176  Identities=13%  Similarity=0.102  Sum_probs=118.4

Q ss_pred             cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC-CcEEEEEECCCCcEEEEecCCCcEEEEeCCCC
Q 016458           63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP  141 (389)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  141 (389)
                      +.|-...|+++.|+|+.+.|++......-.|+=...|+.+.+++... ...-.+.+..+|++.++--.++.+.++.++..
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            45556669999999999999988888888888778899998887543 33556788888888888888899999888765


Q ss_pred             CCCCCCCcceeee--ccc-ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc-----cCCCCCCeeEEE
Q 016458          142 TDKDGNLPVSRML--SGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF-----QSGHTADVLSVS  213 (389)
Q Consensus       142 ~~~~~~~~~~~~~--~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~v~~~~  213 (389)
                      ............+  ..+ +...-.++|.|.. ..|+.+=.-.-+.||...............     ..-.-..+.++.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            3211100001111  112 5567789999987 567767666777777665433111110000     001124577888


Q ss_pred             eeCCCCcEEEEeeCCCceEEEeCCCC
Q 016458          214 ISGSNSRMFVSGSCDSTARLWDTRVA  239 (389)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~  239 (389)
                      +++..+.+++-+.+++.+.-.|....
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCCC
Confidence            99888889999988988888887643

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.91  E-value=0.002  Score=43.72  Aligned_cols=101  Identities=17%  Similarity=0.264  Sum_probs=68.5

Q ss_pred             eEEEEEee---CCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCC
Q 016458          161 VSCCQYVP---DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  237 (389)
Q Consensus       161 v~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  237 (389)
                      |+++++..   +|.+.|++|+.|..|++|+-.  ..+..+      .....|++++-..  ...|+.+..+|+|-+|+-.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei------~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI------TETDKVTSLCSLG--GGRFAYALANGTVGVYDRS   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE------ecccceEEEEEcC--CCEEEEEecCCEEEEEeCc
Confidence            44555543   556889999999999999854  455554      4456788888775  3678999999999999864


Q ss_pred             CCCcceeEEeeeccceEEEEEec-CC---CEEEEEecCCeEE
Q 016458          238 VASRAVRTFHGHEGDVNTVKFFP-DG---NRFGTGSDDGTCR  275 (389)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~-~~---~~l~~~~~dg~i~  275 (389)
                      .   .+-..+. ...+.++++.. ++   .-|++|-.+|.|-
T Consensus        72 ~---RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   72 Q---RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             c---eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            2   2223332 23366666554 22   3688888888874

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.89  E-value=0.0033  Score=50.04  Aligned_cols=213  Identities=13%  Similarity=0.128  Sum_probs=126.4

Q ss_pred             EEEEEeeCCCcEEEEeeCCCe-EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-----CCceEEEe
Q 016458          162 SCCQYVPDEDTHLITSSGDQT-CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----DSTARLWD  235 (389)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d  235 (389)
                      ..+.++|..+.-++.+-.-|+ ..++|.........+...   ......-.=.|+| ++.+|+..-.     -|.|-+||
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~---~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd  146 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ---EGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYD  146 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc---cCceeecccccCC-CCcEEEeecCCCCCCCceEEEEe
Confidence            356777776666666655554 567888887666655321   1111122335787 7777776543     37899999


Q ss_pred             CCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC------------------CeEEEEECCCCceeeEeeccCCCCCC
Q 016458          236 TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD------------------GTCRLFDIRTGHQLQVYYQQHGENEI  297 (389)
Q Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------------g~i~i~d~~~~~~~~~~~~~~~~~~~  297 (389)
                      .+..-..+-.+..|.-....+.+.+||+.++.+...                  -++.+.|..++..+........ ...
T Consensus       147 ~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~-l~~  225 (366)
T COG3490         147 AREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS-LRQ  225 (366)
T ss_pred             cccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh-hhh
Confidence            997767777888888888999999999998876431                  1334444445544443332211 122


Q ss_pred             CCeeEEEeCCCCCEEEEEecCCc-----EEEEEcccceEEEeecCcC---CCCCCCeeEEEECCCCCeEEeeeCCCe-eE
Q 016458          298 PHVTSIAFSISGRLLFAGYSNGD-----CYVWDTLLAKVVLNLGSLQ---NSHEGRITCLGLSADGSALCTGSWDTN-LK  368 (389)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~  368 (389)
                      ..+..++..+||..++.+-..|.     -.+=....++++..+....   ......|-+++.+.+..+++..+-.|. ..
T Consensus       226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v  305 (366)
T COG3490         226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV  305 (366)
T ss_pred             cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence            24788888888887766543331     1111112333333331100   112346778888876556655555554 45


Q ss_pred             EeecceecccCcccC
Q 016458          369 VNLGFWRVQEGALSP  383 (389)
Q Consensus       369 i~~~~W~~~~~~~~~  383 (389)
                      +    ||..+|.+..
T Consensus       306 i----~da~tG~vv~  316 (366)
T COG3490         306 I----WDAATGAVVS  316 (366)
T ss_pred             E----EEcCCCcEEe
Confidence            5    9999998764

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.87  E-value=0.0097  Score=54.10  Aligned_cols=200  Identities=16%  Similarity=0.179  Sum_probs=120.4

Q ss_pred             cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCC------eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeE
Q 016458          172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD------VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT  245 (389)
Q Consensus       172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  245 (389)
                      ..++.++.++.|.-+|..+++.+..+...........      -..+++.   +..++.++.|+.|.-+|.+++ +.+-.
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~---~~~v~v~t~dg~l~ALDa~TG-k~~W~  145 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY---DGKVFFGTLDARLVALDAKTG-KVVWS  145 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE---CCEEEEEcCCCEEEEEECCCC-CEEee
Confidence            3677778888999999999998887743211000000      0112222   245667788999999999887 44333


Q ss_pred             Eeee-ccceEEEEEec---CCCEEEEEe------cCCeEEEEECCCCceeeEeeccCCCC--------------------
Q 016458          246 FHGH-EGDVNTVKFFP---DGNRFGTGS------DDGTCRLFDIRTGHQLQVYYQQHGEN--------------------  295 (389)
Q Consensus       246 ~~~~-~~~i~~~~~~~---~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~--------------------  295 (389)
                      .... ...-..+.-+|   ++ .++++.      .+|.|..+|.++++.+..+.......                    
T Consensus       146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~  224 (527)
T TIGR03075       146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP  224 (527)
T ss_pred             cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence            2211 00001111122   34 455543      26899999999999887765432210                    


Q ss_pred             -------CCCCeeEEEeCCCCCEEEEEecC-----C-----------cEEEEEcccceEEEeecCcCCCCCC-------C
Q 016458          296 -------EIPHVTSIAFSISGRLLFAGYSN-----G-----------DCYVWDTLLAKVVLNLGSLQNSHEG-------R  345 (389)
Q Consensus       296 -------~~~~i~~~~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~~~~-------~  345 (389)
                             ....-..+++.|...+++.+..+     +           .|.-.|+++|+....+...  .|+.       .
T Consensus       225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~--~~D~wD~d~~~~  302 (527)
T TIGR03075       225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTT--PHDEWDYDGVNE  302 (527)
T ss_pred             CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCC--CCCCccccCCCC
Confidence                   00112245777777777776532     2           6778899999999888542  2221       1


Q ss_pred             eeEEEECCCCC---eEEeeeCCCeeEEeecceecccCccc
Q 016458          346 ITCLGLSADGS---ALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       346 v~~~~~~~~~~---~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      ..-+.+..+|+   .++.+..+|.+.+    .|..+|++.
T Consensus       303 p~l~d~~~~G~~~~~v~~~~K~G~~~v----lDr~tG~~i  338 (527)
T TIGR03075       303 MILFDLKKDGKPRKLLAHADRNGFFYV----LDRTNGKLL  338 (527)
T ss_pred             cEEEEeccCCcEEEEEEEeCCCceEEE----EECCCCcee
Confidence            12222334666   7889999999999    999999984

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PHA02713 hypothetical protein; Provisional

Probab=97.85  E-value=0.0031  Score=57.83  Aligned_cols=222  Identities=8%  Similarity=0.033  Sum_probs=104.9

Q ss_pred             cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC------CcEEEEeCCCCCCCCCCCcceeeecccccceEE
Q 016458           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC  163 (389)
Q Consensus        90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~  163 (389)
                      .+..||..+.+-...-..+..........-++..++.||.+      ..+..||..+..     +.....+....... +
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~-----W~~~~~m~~~R~~~-~  346 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKI-----HVELPPMIKNRCRF-S  346 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCe-----EeeCCCCcchhhce-e
Confidence            46778876654322211111111111122366777777754      246777876532     11111111111111 2


Q ss_pred             EEEeeCCCcEEEEeeCCC-----eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC---------
Q 016458          164 CQYVPDEDTHLITSSGDQ-----TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS---------  229 (389)
Q Consensus       164 ~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------  229 (389)
                      ++. -+ +.+.+.||.++     .+..||..+..-...-+.    .....-.+++..  ++.+.+.|+.++         
T Consensus       347 ~~~-~~-g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~m----p~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~  418 (557)
T PHA02713        347 LAV-ID-DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDM----PIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHH  418 (557)
T ss_pred             EEE-EC-CEEEEECCcCCCCCCceEEEEECCCCeEEECCCC----CcccccccEEEE--CCEEEEEeCCCcccccccccc
Confidence            222 23 36777787654     488899887754432211    111111122222  667777777653         


Q ss_pred             --------------ceEEEeCCCCC-cceeEEeeeccceEEEEEecCCCEEEEEecC------CeEEEEECCC-CceeeE
Q 016458          230 --------------TARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD------GTCRLFDIRT-GHQLQV  287 (389)
Q Consensus       230 --------------~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~~~~  287 (389)
                                    .+..||..+.. ..+..+....... +++ .-++++.+.|+.+      ..+..||..+ .+-...
T Consensus       419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~  496 (557)
T PHA02713        419 MNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI  496 (557)
T ss_pred             cccccccccccccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc
Confidence                          46677776541 1111111111111 122 2256677777654      2467888876 332221


Q ss_pred             eeccCCCCCCCCeeEEEeCCCCCEEEEEecCC--cEEEEEcccceEE
Q 016458          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--DCYVWDTLLAKVV  332 (389)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~  332 (389)
                      -....   .......+.+  +|+..++|+.+|  .+..||..+.+-.
T Consensus       497 ~~m~~---~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        497 TTTES---RLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             cccCc---ccccceeEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence            11111   1111222233  678888888888  6777887665544

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.83  E-value=0.0042  Score=56.86  Aligned_cols=189  Identities=12%  Similarity=0.064  Sum_probs=101.4

Q ss_pred             CcEEEEEEcCCCCeEEEEe------cCC--cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC---------
Q 016458           68 GKVYSLDWTSERNRIVSAS------QDG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---------  130 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~------~dg--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------  130 (389)
                      ..+...+++|+|+.+|...      .|+  .|.+++. .+.. ..+... .....-.|+|+|..+++....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4578899999999877654      244  4444454 2222 333222 237788999998877776432         


Q ss_pred             ---CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEE---EeCCCCeeEEEecCcccCC
Q 016458          131 ---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL---WDITTGLRTSVFGGEFQSG  204 (389)
Q Consensus       131 ---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~~~~~~~~~~~~~  204 (389)
                         +.+.+.+++.+.       ...   ...+.|..+.|+|||..+++..  +|.|.+   -....+.....-.......
T Consensus       427 ~~~gql~~~~vd~ge-------~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~  494 (591)
T PRK13616        427 PATGQLARTPVDASA-------VAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPG  494 (591)
T ss_pred             CCCceEEEEeccCch-------hhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecc
Confidence               222222332211       111   2346799999999996544444  477777   4444454111100001123


Q ss_pred             CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee--eccceEEEEEecCCCEEEEEecCCeEE
Q 016458          205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCR  275 (389)
Q Consensus       205 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~  275 (389)
                      ....+.++.|.+ ++.++ ++..++.-.+|.+.-.......+..  ...++..++-+++  .++....+|.+.
T Consensus       495 l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        495 LGDTAVSLDWRT-GDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             cCCccccceEec-CCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            334468899997 55544 5555555555544332222222222  2456777776653  455556666443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.82  E-value=0.011  Score=50.56  Aligned_cols=235  Identities=17%  Similarity=0.167  Sum_probs=103.0

Q ss_pred             CCcEEEEec-CCCcEEEEeCCCCCCCCCCCcceeeecc---cc----cceEEEEEeeCCCcEEEEee------CCCeEEE
Q 016458          120 TGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSG---HK----GYVSCCQYVPDEDTHLITSS------GDQTCVL  185 (389)
Q Consensus       120 ~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~---~~----~~v~~~~~~~~~~~~l~~~~------~dg~i~i  185 (389)
                      +.++|+..+ ..+.|+|.|+.+...   ...+.+.+..   +.    .....+...|+| .+++++-      .-|-+.+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr---~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf~l  161 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPR---KPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG-RIMISALGDADGNGPGGFVL  161 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TT---S-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEE
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCC---CCceEeeeCHHHHHhhcCCCCCceeeecCCc-cEEEEeccCCCCCCCCcEEE
Confidence            456666655 678999999986331   2223333332   11    122334445665 4666542      2356888


Q ss_pred             EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee--------------------CCCceEEEeCCCCCcceeE
Q 016458          186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS--------------------CDSTARLWDTRVASRAVRT  245 (389)
Q Consensus       186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--------------------~dg~i~i~d~~~~~~~~~~  245 (389)
                      +|-++.+........  ......-..+-+.| ..+.+++..                    ...++.+||+... +.++.
T Consensus       162 lD~~tf~v~g~We~~--~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r-~~~Q~  237 (461)
T PF05694_consen  162 LDGETFEVKGRWEKD--RGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR-KLLQT  237 (461)
T ss_dssp             E-TTT--EEEE--SB---TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT-EEEEE
T ss_pred             EcCccccccceeccC--CCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC-cEeeE
Confidence            898887777766322  22344556777888 667777743                    2458999999987 67777


Q ss_pred             Eeeecc--ceEEEEEec--CCCEEEE-EecCCeEEEEEC-CCCce----eeEeeccCCCC----C--------CCCeeEE
Q 016458          246 FHGHEG--DVNTVKFFP--DGNRFGT-GSDDGTCRLFDI-RTGHQ----LQVYYQQHGEN----E--------IPHVTSI  303 (389)
Q Consensus       246 ~~~~~~--~i~~~~~~~--~~~~l~~-~~~dg~i~i~d~-~~~~~----~~~~~~~~~~~----~--------~~~i~~~  303 (389)
                      +.--..  .+..+.|..  +..+=++ +.-.++|..|-- ..+.-    +..+.......    .        ..-|+.+
T Consensus       238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI  317 (461)
T PF05694_consen  238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI  317 (461)
T ss_dssp             EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------E
T ss_pred             EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeE
Confidence            654322  345666654  3444333 334445554433 33321    11111110000    0        1247999


Q ss_pred             EeCCCCCEEEEEe-cCCcEEEEEcccc---eEEEeecC--cC----------CCCCCCeeEEEECCCCCeEEeee
Q 016458          304 AFSISGRLLFAGY-SNGDCYVWDTLLA---KVVLNLGS--LQ----------NSHEGRITCLGLSADGSALCTGS  362 (389)
Q Consensus       304 ~~~~~~~~l~~~~-~dg~i~i~d~~~~---~~~~~~~~--~~----------~~~~~~v~~~~~~~~~~~l~~~~  362 (389)
                      .+|.|.++|++++ .+|.|+.||+...   +....+..  ..          ..-.+...-+..|-||+.|...+
T Consensus       318 ~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  318 LISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            9999999998876 4899999999753   22222210  00          01123457788899998886654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.80  E-value=0.011  Score=47.27  Aligned_cols=192  Identities=11%  Similarity=0.127  Sum_probs=121.2

Q ss_pred             cceEEEEEeeCCCcEEEEeeCCC--eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeC
Q 016458          159 GYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT  236 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  236 (389)
                      .....+.|..++ .++-+.+.-|  .|+.+|+.+++.......    ...-.-..++..  ++.+....=.++...+||.
T Consensus        45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l----~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~  117 (264)
T PF05096_consen   45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPL----PPRYFGEGITIL--GDKLYQLTWKEGTGFVYDP  117 (264)
T ss_dssp             -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-----TTT--EEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred             ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEEC----CccccceeEEEE--CCEEEEEEecCCeEEEEcc
Confidence            345567787765 6667777665  799999999987766532    222233445555  4566666677899999999


Q ss_pred             CCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458          237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (389)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (389)
                      .+. +.+.++. ..+.=..++  .+++.|+.......|+++|..+.+....+...........++.+.+- +|...|=.-
T Consensus       118 ~tl-~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW  192 (264)
T PF05096_consen  118 NTL-KKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW  192 (264)
T ss_dssp             TTT-EEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred             ccc-eEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence            876 6666664 334456676  46777887777889999999988887777665544444457778775 666555555


Q ss_pred             cCCcEEEEEcccceEEEeecCcC-----------CCCCCCeeEEEECCCCCeEEeee
Q 016458          317 SNGDCYVWDTLLAKVVLNLGSLQ-----------NSHEGRITCLGLSADGSALCTGS  362 (389)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~l~~~~  362 (389)
                      ....|...|..+|+....+....           .....-.+.|||+|....|...|
T Consensus       193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            66788999999998887653100           11245689999988665554444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.77  E-value=0.017  Score=48.28  Aligned_cols=224  Identities=14%  Similarity=0.113  Sum_probs=125.4

Q ss_pred             EEEcCCCC-eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcce
Q 016458           73 LDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS  151 (389)
Q Consensus        73 ~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  151 (389)
                      -.|.++.. ++.+--..+.|.-|+..+++. ..+..+.. +.++..-..+..|+++.  .-+.+++.+.+...   ....
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~-~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~---t~~~  102 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGG-FSSGALIDAGGRLIACE--HGVRLLDPDTGGKI---TLLA  102 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCC-cccceeecCCCeEEEEc--cccEEEeccCCcee---EEec
Confidence            34667666 455555678888888775543 23333333 34443333444444442  23566666433210   0011


Q ss_pred             eeecc-cccceEEEEEeeCCCcEEEEeeCC------------CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458          152 RMLSG-HKGYVSCCQYVPDEDTHLITSSGD------------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN  218 (389)
Q Consensus       152 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  218 (389)
                      ....+ .....+.+...|+|.  +..++..            |.|+.+|. .+......     ..+-..-+.++|+|++
T Consensus       103 ~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~-----~~~~~~~NGla~SpDg  174 (307)
T COG3386         103 EPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL-----DDDLTIPNGLAFSPDG  174 (307)
T ss_pred             cccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcC-CCCEEEee-----cCcEEecCceEECCCC
Confidence            11111 124556778888873  3333222            44555554 45555544     3445567889999944


Q ss_pred             CcEEEEeeCCCceEEEeCCC--C---Cc-ceeEEeeeccceEEEEEecCCCEEEEEecCC-eEEEEECCCCceeeEeecc
Q 016458          219 SRMFVSGSCDSTARLWDTRV--A---SR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-TCRLFDIRTGHQLQVYYQQ  291 (389)
Q Consensus       219 ~~~l~~~~~dg~i~i~d~~~--~---~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~  291 (389)
                      ..++++=+..+.|.-|++..  .   .+ ....+....+..-.++...+|.+.+++..+| .|.+|+.. ++.+..+..+
T Consensus       175 ~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP  253 (307)
T COG3386         175 KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP  253 (307)
T ss_pred             CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence            44555555568888887762  1   11 1122223345667788888888876555554 89999988 8888888776


Q ss_pred             CCCCCCCCeeEEEeC-CCCCEEEEEec
Q 016458          292 HGENEIPHVTSIAFS-ISGRLLFAGYS  317 (389)
Q Consensus       292 ~~~~~~~~i~~~~~~-~~~~~l~~~~~  317 (389)
                      ...     +++++|- |+.+.|++.+.
T Consensus       254 ~~~-----~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         254 VKR-----PTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CCC-----CccceEeCCCcCEEEEEec
Confidence            433     7788875 44555555443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.77  E-value=0.014  Score=53.60  Aligned_cols=232  Identities=13%  Similarity=0.188  Sum_probs=118.5

Q ss_pred             CCCCeEEEEecC------CcEEEEeCCCCCeeEEEeeCCCc-EEEEEECCCCcEEEEecCC-C-----cEEEEeCCCCCC
Q 016458           77 SERNRIVSASQD------GRLIVWNALTSQKTHAIKLPCAW-VMTCAFSPTGQSVACGGLD-S-----VCSIFNLNSPTD  143 (389)
Q Consensus        77 ~~~~~l~~~~~d------g~v~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d-g-----~i~vw~~~~~~~  143 (389)
                      ..+.+++.|+.+      ..+..||..++.-.......... -.+++. -++...++||.| |     .+..||....+ 
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-  360 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQ-  360 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccCCCcccceEEEecCCCCc-
Confidence            345566777766      36778888776443333322222 222333 356788889888 3     46677776533 


Q ss_pred             CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe-----EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458          144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT-----CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN  218 (389)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  218 (389)
                          +.....+........ ++..  ++.+.+.||.||.     +-.||..+.+....-+      ............-+
T Consensus       361 ----W~~~a~M~~~R~~~~-v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~------m~~~r~~~gv~~~~  427 (571)
T KOG4441|consen  361 ----WTPVAPMNTKRSDFG-VAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP------MLTRRSGHGVAVLG  427 (571)
T ss_pred             ----eeccCCccCccccce-eEEE--CCEEEEEeccccccccccEEEecCCCCcccccCC------CCcceeeeEEEEEC
Confidence                222222222211111 1111  2467888888864     7778877765443321      11122222222237


Q ss_pred             CcEEEEeeCCC------ceEEEeCCCCC-cceeEEeeeccceEEEEEecCCCEEEEEecCCe-----EEEEECCCCceee
Q 016458          219 SRMFVSGSCDS------TARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-----CRLFDIRTGHQLQ  286 (389)
Q Consensus       219 ~~~l~~~~~dg------~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~  286 (389)
                      +.+.++|+.++      ++..||..+.. ..+..+..-..... ++.- ++.+.+.||.|+.     |..||..+.+-..
T Consensus       428 g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~  505 (571)
T KOG4441|consen  428 GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTM  505 (571)
T ss_pred             CEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence            78888888654      46678776541 11111111111111 2222 6778888887763     7778887765444


Q ss_pred             EeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC-----cEEEEEcccce
Q 016458          287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-----DCYVWDTLLAK  330 (389)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  330 (389)
                      .-......   ..+....  -++...++|+.||     +|..||..+.+
T Consensus       506 v~~m~~~r---s~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  506 VAPMTSPR---SAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             cccCcccc---ccccEEE--ECCEEEEEecccCccccceeEEcCCCCCc
Confidence            32111111   0111122  2566777777776     46667665544

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.76  E-value=0.0016  Score=56.28  Aligned_cols=142  Identities=18%  Similarity=0.228  Sum_probs=95.5

Q ss_pred             cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC------CcEEEEeeCCCceEEEeCCCCCc-cee
Q 016458          172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN------SRMFVSGSCDSTARLWDTRVASR-AVR  244 (389)
Q Consensus       172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~-~~~  244 (389)
                      -++.++.....|+-.|++.|+.+...     ..+.. |.-+.+.|..      ...-+.|-.+..|.-||.|-... .+.
T Consensus       347 lil~~~~~~~~l~klDIE~GKIVeEW-----k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~  420 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERGKIVEEW-----KFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA  420 (644)
T ss_pred             eEeeCCCCcCcceeeecccceeeeEe-----eccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence            34556666788999999999999988     33333 6666666621      11234577789999999986544 222


Q ss_pred             EEeee----ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCc
Q 016458          245 TFHGH----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD  320 (389)
Q Consensus       245 ~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  320 (389)
                      ....|    .....|.+-..+| +|++|+.+|.|++||- .+....+..+..+    .+|..+..+.+|++|++.+.. .
T Consensus       421 ~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG----~~I~hVdvtadGKwil~Tc~t-y  493 (644)
T KOG2395|consen  421 VVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLG----DAIKHVDVTADGKWILATCKT-Y  493 (644)
T ss_pred             eeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccC----CceeeEEeeccCcEEEEeccc-E
Confidence            22223    2345566665555 7999999999999996 5555544444333    369999999999998877554 6


Q ss_pred             EEEEEc
Q 016458          321 CYVWDT  326 (389)
Q Consensus       321 i~i~d~  326 (389)
                      +.+.++
T Consensus       494 LlLi~t  499 (644)
T KOG2395|consen  494 LLLIDT  499 (644)
T ss_pred             EEEEEE
Confidence            666664

>PHA02713 hypothetical protein; Provisional

Probab=97.74  E-value=0.002  Score=59.04  Aligned_cols=192  Identities=9%  Similarity=0.036  Sum_probs=96.1

Q ss_pred             CCCeEEEEecC------CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCC-----cEEEEeCCCCCCCCC
Q 016458           78 ERNRIVSASQD------GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS-----VCSIFNLNSPTDKDG  146 (389)
Q Consensus        78 ~~~~l~~~~~d------g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vw~~~~~~~~~~  146 (389)
                      ++..++.|+.+      ..+..||..+..-......+...-......-+++..+.||.++     .+..||..+..    
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~----  378 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDK----  378 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCe----
Confidence            45566666643      2466778766542211111111111111223677788888764     47788877632    


Q ss_pred             CCcceeeecccccceEEEEEeeCCCcEEEEeeCC-----------------------CeEEEEeCCCCeeEEEecCcccC
Q 016458          147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----------------------QTCVLWDITTGLRTSVFGGEFQS  203 (389)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------------------g~i~iwd~~~~~~~~~~~~~~~~  203 (389)
                       +.....+.........+.  -++ .+.+.||.+                       ..+..||..+.+-...-+.    
T Consensus       379 -W~~~~~mp~~r~~~~~~~--~~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m----  450 (557)
T PHA02713        379 -WKMLPDMPIALSSYGMCV--LDQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF----  450 (557)
T ss_pred             -EEECCCCCcccccccEEE--ECC-EEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC----
Confidence             111111111111111111  233 667777654                       2477888887755433211    


Q ss_pred             CCCCCeeEEEeeCCCCcEEEEeeCCC------ceEEEeCCC-C-CcceeEEeeeccceEEEEEecCCCEEEEEecCC--e
Q 016458          204 GHTADVLSVSISGSNSRMFVSGSCDS------TARLWDTRV-A-SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG--T  273 (389)
Q Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~-~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~  273 (389)
                      .....-.+++..  ++.+.+.|+.++      .+..||..+ . ...+..+.........+.+  ++++.++|+.+|  .
T Consensus       451 ~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~  526 (557)
T PHA02713        451 WTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYML  526 (557)
T ss_pred             CcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceee
Confidence            111111223333  567777777542      467888885 2 2223333322222233333  778889999888  6


Q ss_pred             EEEEECCCCcee
Q 016458          274 CRLFDIRTGHQL  285 (389)
Q Consensus       274 i~i~d~~~~~~~  285 (389)
                      +..||..+.+-.
T Consensus       527 ~e~yd~~~~~W~  538 (557)
T PHA02713        527 QDTFNVYTYEWN  538 (557)
T ss_pred             hhhcCccccccc
Confidence            777877765543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.73  E-value=6e-05  Score=57.52  Aligned_cols=106  Identities=10%  Similarity=0.103  Sum_probs=62.6

Q ss_pred             CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec
Q 016458          171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE  250 (389)
Q Consensus       171 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  250 (389)
                      ..-++.|+.+|.|.+|+...........    ......+.++...-..+.+..++..+|.|+.|++.-. +.+.....|+
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~----~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~  144 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV----CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHN  144 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhh----hcccccceeccccccccceeEEeccCCceeeeccccC-ceeeeecccc
Confidence            4569999999999999876321111110    1122233333333335568889999999999998765 4444445555


Q ss_pred             -cceEEEEEecCCCEEEEE--ecCCeEEEEECCC
Q 016458          251 -GDVNTVKFFPDGNRFGTG--SDDGTCRLFDIRT  281 (389)
Q Consensus       251 -~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~  281 (389)
                       .++.....+..+..++.+  +.|..++.|++..
T Consensus       145 ~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  145 FESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence             444444444445555555  5555556665543

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.72  E-value=0.0037  Score=57.22  Aligned_cols=160  Identities=15%  Similarity=0.088  Sum_probs=86.9

Q ss_pred             CCeeEEEeeCCCCcEEEEee------CCC--ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC-CeEEEE
Q 016458          207 ADVLSVSISGSNSRMFVSGS------CDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-GTCRLF  277 (389)
Q Consensus       207 ~~v~~~~~~~~~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~  277 (389)
                      ..+.+.+++| +++.++...      .|+  .|.+++...  .. ..+.. ......-.|+|+|..|++.... ..+++.
T Consensus       350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGG--VA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCC--cc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEe
Confidence            4678889999 555554433      233  555556432  22 22221 2237888999998888777533 122232


Q ss_pred             ECCCCceeeEeeccCCC---CCCCCeeEEEeCCCCCEEEEEecCCcEEE---EEcccceEEE-eecCcCCCCCCCeeEEE
Q 016458          278 DIRTGHQLQVYYQQHGE---NEIPHVTSIAFSISGRLLFAGYSNGDCYV---WDTLLAKVVL-NLGSLQNSHEGRITCLG  350 (389)
Q Consensus       278 d~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~-~~~~~~~~~~~~v~~~~  350 (389)
                      +-.....+.........   .....|..+.|||||..++... +|.|++   -....|.... ....+...-...+.++.
T Consensus       425 ~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~  503 (591)
T PRK13616        425 RDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD  503 (591)
T ss_pred             ccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence            22111122211111100   1123499999999999888765 577777   4444454111 11111123334468899


Q ss_pred             ECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          351 LSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       351 ~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      |..++.++ ++..++...+    |.+.
T Consensus       504 W~~~~~L~-V~~~~~~~~v----~~v~  525 (591)
T PRK13616        504 WRTGDSLV-VGRSDPEHPV----WYVN  525 (591)
T ss_pred             EecCCEEE-EEecCCCCce----EEEe
Confidence            99998854 5566666666    6654

>smart00320 WD40 WD40 repeats

Probab=97.67  E-value=0.00017  Score=38.81  Aligned_cols=32  Identities=34%  Similarity=0.665  Sum_probs=29.5

Q ss_pred             CCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458          340 NSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR  375 (389)
Q Consensus       340 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~  375 (389)
                      ..|...|.++.|.+++.++++++.|+.+++    |+
T Consensus         9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~----~~   40 (40)
T smart00320        9 KGHTGPVTSVAFSPDGKYLASASDDGTIKL----WD   40 (40)
T ss_pred             EecCCceeEEEECCCCCEEEEecCCCeEEE----cC
Confidence            567889999999999999999999999999    86

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.55  E-value=0.042  Score=46.91  Aligned_cols=253  Identities=15%  Similarity=0.151  Sum_probs=118.9

Q ss_pred             cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCc-ceeeecccccceEEEEEeeC--CCcEEEEeeC-C------
Q 016458          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLP-VSRMLSGHKGYVSCCQYVPD--EDTHLITSSG-D------  180 (389)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~-d------  180 (389)
                      ..+.|+|.|+|+++++ ...|.|.+++..... . .... ..............++++|+  .+.+|+.... .      
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~-~-~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSL-K-TPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEETTTEE-C-EEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEeCCCcC-c-ceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence            3678999999887665 459999999933211 0 0000 00112234556789999994  1123333332 1      


Q ss_pred             --CeEEEEeCCCC--e--eEEEecCcccC--CCCCCeeEEEeeCCCCcEEEEeeCCCc-------------eEEEeCCCC
Q 016458          181 --QTCVLWDITTG--L--RTSVFGGEFQS--GHTADVLSVSISGSNSRMFVSGSCDST-------------ARLWDTRVA  239 (389)
Q Consensus       181 --g~i~iwd~~~~--~--~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------i~i~d~~~~  239 (389)
                        ..|.-|....+  .  ....+......  .....-..+.|.| ++.++++.+..+.             |.-.+....
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~  158 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS  158 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCc
Confidence              24554554433  1  01111000001  2233456799999 6666666554332             222222211


Q ss_pred             C-----------cceeE-EeeeccceEEEEEecC-CCEEEEE-ecCCeEEEEECCCCcee----eE---------ee-cc
Q 016458          240 S-----------RAVRT-FHGHEGDVNTVKFFPD-GNRFGTG-SDDGTCRLFDIRTGHQL----QV---------YY-QQ  291 (389)
Q Consensus       240 ~-----------~~~~~-~~~~~~~i~~~~~~~~-~~~l~~~-~~dg~i~i~d~~~~~~~----~~---------~~-~~  291 (389)
                      .           ..... -.++.+ ...++|+|. |.++++= +.++.=.|.-+..+...    ..         .. ..
T Consensus       159 ~p~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~  237 (331)
T PF07995_consen  159 IPADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP  237 (331)
T ss_dssp             B-TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred             CCCCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence            0           00111 123333 467999998 6555432 22222222222222110    00         00 00


Q ss_pred             CCC---------CCCCCeeEEEeCC-------CCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458          292 HGE---------NEIPHVTSIAFSI-------SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (389)
Q Consensus       292 ~~~---------~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (389)
                      ...         .....++.+.|-.       .|.++++.-..+.|....+.....+.....+......++..+++.|||
T Consensus       238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG  317 (331)
T PF07995_consen  238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG  317 (331)
T ss_dssp             S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred             CCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence            000         0112355666643       345666666667888888875543333322224555689999999999


Q ss_pred             CeEEeeeCCCeeE
Q 016458          356 SALCTGSWDTNLK  368 (389)
Q Consensus       356 ~~l~~~~~dg~i~  368 (389)
                      .+.++.+.+|.|.
T Consensus       318 ~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  318 ALYVSDDSDGKIY  330 (331)
T ss_dssp             EEEEEE-TTTTEE
T ss_pred             eEEEEECCCCeEe
Confidence            9988888888773

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.00071  Score=63.21  Aligned_cols=104  Identities=19%  Similarity=0.264  Sum_probs=76.7

Q ss_pred             CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCC
Q 016458          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI  297 (389)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  297 (389)
                      ....++.|+..|.+...|.+..-.+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++....+.....+. .
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~-t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV-T  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc-c
Confidence            345788899999999999886423333333346789999999999999999999999999999988888776654331 1


Q ss_pred             CCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458          298 PHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (389)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (389)
                       .+..+.+..++..++++...|.  +|.
T Consensus       177 -~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  177 -GVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             -eEEEEEEeCCCcEEEEccCCCc--eEE
Confidence             2444555556667888877776  554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.52  E-value=0.00049  Score=38.84  Aligned_cols=34  Identities=21%  Similarity=0.509  Sum_probs=29.8

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCe
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK  101 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~  101 (389)
                      ...|.+++|+|..++||.++.+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            346999999999999999999999999998 5544

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.51  E-value=0.021  Score=49.56  Aligned_cols=86  Identities=12%  Similarity=0.139  Sum_probs=54.5

Q ss_pred             ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC-------------C-CCE-EEE
Q 016458          250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-------------S-GRL-LFA  314 (389)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~-~~~-l~~  314 (389)
                      ...+.+++.+|++++.++...=|.|.++|+..+..+..+...... ....+....-..             . ..+ ++-
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA-qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA-QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc-eEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            345788999999998888888899999999988766665443221 100111100000             0 112 223


Q ss_pred             EecCCcEEEEEcccceEEEeec
Q 016458          315 GYSNGDCYVWDTLLAKVVLNLG  336 (389)
Q Consensus       315 ~~~dg~i~i~d~~~~~~~~~~~  336 (389)
                      .-.-|.|.||++++|..+..+.
T Consensus       386 aprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             eccCCeEEEEecCCCCEEEEEE
Confidence            4567899999998888877663

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.51  E-value=0.025  Score=45.25  Aligned_cols=238  Identities=12%  Similarity=0.107  Sum_probs=130.4

Q ss_pred             EEEEEcCCCC-eEEEEecCCc-EEEEeCCCCCeeEEEeeCCCc--EEEEEECCCCcEEEEecC-----CCcEEEEeCCCC
Q 016458           71 YSLDWTSERN-RIVSASQDGR-LIVWNALTSQKTHAIKLPCAW--VMTCAFSPTGQSVACGGL-----DSVCSIFNLNSP  141 (389)
Q Consensus        71 ~~~~~~~~~~-~l~~~~~dg~-v~iw~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~-----dg~i~vw~~~~~  141 (389)
                      ..|+|+|... -++.+-.-|+ ..++|....+...++....+.  --.=.|||+|.+|+..-.     -|.|-|||.+.+
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            3577777543 4555655554 467888887776666543321  223469999999987643     378999999853


Q ss_pred             CCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC-----------------CCeEEEEeCCCCeeEEEecCcccCC
Q 016458          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----------------DQTCVLWDITTGLRTSVFGGEFQSG  204 (389)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~  204 (389)
                      -      .....+..|.-....+.+.+||..++++.+.                 .-++.+.|..++..+....... ..
T Consensus       151 f------qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~-~l  223 (366)
T COG3490         151 F------QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA-SL  223 (366)
T ss_pred             c------ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch-hh
Confidence            2      3455566777777789999998544433330                 1123333433443332221100 12


Q ss_pred             CCCCeeEEEeeCCCCcEEEEeeCCCc----eEEEeCCCCCcceeEEe-------eeccceEEEEEecCCCEEEEEe-cCC
Q 016458          205 HTADVLSVSISGSNSRMFVSGSCDST----ARLWDTRVASRAVRTFH-------GHEGDVNTVKFFPDGNRFGTGS-DDG  272 (389)
Q Consensus       205 ~~~~v~~~~~~~~~~~~l~~~~~dg~----i~i~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~-~dg  272 (389)
                      +.-.+..++..+ ++..++.+-..|.    --+.-.....+++..+.       .....|-+++.+.+..+++..+ ..+
T Consensus       224 ~~lSiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN  302 (366)
T COG3490         224 RQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGN  302 (366)
T ss_pred             hhcceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCC
Confidence            334566677665 4444443322221    00001111112222222       1234567788876555554444 556


Q ss_pred             eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458          273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (389)
Q Consensus       273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (389)
                      ...+||..++.....-....       ...++  +...-+++.+.+|.+.++.
T Consensus       303 ~~vi~da~tG~vv~~a~l~d-------aaGva--~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         303 RAVIWDAATGAVVSEAALPD-------AAGVA--AAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             eEEEEEcCCCcEEecccccc-------cccce--eccCceEEecCCceEEecc
Confidence            78899999998776543321       23333  3344466677788888774

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.49  E-value=0.049  Score=50.08  Aligned_cols=226  Identities=14%  Similarity=0.180  Sum_probs=117.9

Q ss_pred             CCCCcEEEEecCCC------cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC------CeEEE
Q 016458          118 SPTGQSVACGGLDS------VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVL  185 (389)
Q Consensus       118 ~~~~~~l~~~~~dg------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i  185 (389)
                      +..+..++.|+.++      .+..||...+.     +.....+. ....-.+++...  +.++++||.|      ..+..
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~-----w~~~a~m~-~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~  353 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNE-----WSSLAPMP-SPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVER  353 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCc-----EeecCCCC-cccccccEEEEC--CEEEEEccccCCCcccceEEE
Confidence            33466677777763      57778877642     11111122 222234445554  3688889888      35778


Q ss_pred             EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCc-----eEEEeCCCCCcceeEEeeeccceEEEEE-e
Q 016458          186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST-----ARLWDTRVASRAVRTFHGHEGDVNTVKF-F  259 (389)
Q Consensus       186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~i~~~~~-~  259 (389)
                      ||..+++-...- ..   .....-..++..  ++.+.++|+.||.     +..||..+..  ............+... .
T Consensus       354 YD~~~~~W~~~a-~M---~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~--W~~va~m~~~r~~~gv~~  425 (571)
T KOG4441|consen  354 YDPRTNQWTPVA-PM---NTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNK--WTPVAPMLTRRSGHGVAV  425 (571)
T ss_pred             ecCCCCceeccC-Cc---cCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCc--ccccCCCCcceeeeEEEE
Confidence            998887744422 11   111111222222  7788999999874     6777776541  1111111111122211 1


Q ss_pred             cCCCEEEEEecCC------eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCc-----EEEEEccc
Q 016458          260 PDGNRFGTGSDDG------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD-----CYVWDTLL  328 (389)
Q Consensus       260 ~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~  328 (389)
                      -+|.+.++||.++      ++..||..+..-...-.......    -..++. -++...++|+.|+.     |..||..+
T Consensus       426 ~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~----~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~  500 (571)
T KOG4441|consen  426 LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS----GFGVAV-LNGKIYVVGGFDGTSALSSVERYDPET  500 (571)
T ss_pred             ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc----cceEEE-ECCEEEEECCccCCCccceEEEEcCCC
Confidence            2677788888554      57788877755433222211110    111222 36777788887763     67788776


Q ss_pred             ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458          329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK  368 (389)
Q Consensus       329 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  368 (389)
                      .+....-.  .......+-...+  +++..++|+.||.-.
T Consensus       501 ~~W~~v~~--m~~~rs~~g~~~~--~~~ly~vGG~~~~~~  536 (571)
T KOG4441|consen  501 NQWTMVAP--MTSPRSAVGVVVL--GGKLYAVGGFDGNNN  536 (571)
T ss_pred             CceeEccc--CccccccccEEEE--CCEEEEEecccCccc
Confidence            55433211  0222222222232  577888888887543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.47  E-value=0.07  Score=48.72  Aligned_cols=226  Identities=8%  Similarity=0.087  Sum_probs=116.5

Q ss_pred             cCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458           67 AGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (389)
Q Consensus        67 ~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (389)
                      -+...++..+|..- -+.  +.--.|+||+. +|+.+..+....+.+..+.|+.+.. |++...+|++++|++-......
T Consensus        43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~  118 (829)
T KOG2280|consen   43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIES  118 (829)
T ss_pred             cCCceEEEeccccccccc--ccceeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhhhcc
Confidence            34455666665321 111  23346888885 5777776666666899999997665 5566789999999987633111


Q ss_pred             CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC--cEEE
Q 016458          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS--RMFV  223 (389)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~  223 (389)
                      .    ..........|..+.+..+|   ++.-..+|.+.+-+-........++..  +....+-.|....++..  ..++
T Consensus       119 ~----svg~e~~~~~I~ec~~f~~G---Vavlt~~g~v~~i~~~~~~~~~~~~di--P~~~~~~~~Wt~~~~~~~~~~ll  189 (829)
T KOG2280|consen  119 N----SVGFESQMSDIVECRFFHNG---VAVLTVSGQVILINGVEEPKLRKMPDI--PYNELPKSCWTVFQPHRQSTILL  189 (829)
T ss_pred             c----ccccccccCceeEEEEecCc---eEEEecCCcEEEEcCCCcchhhhCCCC--CCccCCCcceeEecCCCcceeEE
Confidence            0    00011222345555555554   444445555554432222222222110  11112223333333111  1111


Q ss_pred             EeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEE
Q 016458          224 SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI  303 (389)
Q Consensus       224 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  303 (389)
                      --...--..++-..........+....+.+..+..||+.++|+--..+|.|.+-+....+....+......    +...+
T Consensus       190 ~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~----~p~qm  265 (829)
T KOG2280|consen  190 DVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD----PPKQM  265 (829)
T ss_pred             eechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC----chHhc
Confidence            11100001122222221222233323456888999999999999999999999998877776666543222    12366


Q ss_pred             EeCCCC
Q 016458          304 AFSISG  309 (389)
Q Consensus       304 ~~~~~~  309 (389)
                      +|..+.
T Consensus       266 ~Wcgnd  271 (829)
T KOG2280|consen  266 AWCGND  271 (829)
T ss_pred             eeecCC
Confidence            665443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.45  E-value=0.00062  Score=63.58  Aligned_cols=101  Identities=27%  Similarity=0.321  Sum_probs=73.1

Q ss_pred             CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCC
Q 016458          261 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN  340 (389)
Q Consensus       261 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  340 (389)
                      .+..++.|+..|.+...|+...-.  .  .+.+.....+|++++|+.+|..++.|-.+|.|.+||+..++....+.....
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~--~--~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a  173 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLG--P--LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA  173 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccc--h--hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence            456789999999999999875411  1  122344556799999999999999999999999999999999988844323


Q ss_pred             CCCCCeeEEEECCCCCeEEeeeCCCe
Q 016458          341 SHEGRITCLGLSADGSALCTGSWDTN  366 (389)
Q Consensus       341 ~~~~~v~~~~~~~~~~~l~~~~~dg~  366 (389)
                      .+.+.+. +.+..++..++++..-|.
T Consensus       174 p~t~vi~-v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  174 PVTGVIF-VGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             ccceEEE-EEEeCCCcEEEEccCCCc
Confidence            3333333 334445557777777776

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.40  E-value=0.076  Score=46.30  Aligned_cols=155  Identities=9%  Similarity=0.082  Sum_probs=88.6

Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEe---eCCCcEEEEeeCCCeEEEEeCCCCeeE--
Q 016458          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV---PDEDTHLITSSGDQTCVLWDITTGLRT--  194 (389)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~--  194 (389)
                      +...+++|+..|.++||+............+..   .-..+|..+..-   +..+...++.-.-..+.+|.+......  
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~---~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET---QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEE---ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence            446899999999999999965432222222222   233566666543   322233444466677888877321100  


Q ss_pred             ----EEecCcccCCCCCCeeEEEeeCC----CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEE
Q 016458          195 ----SVFGGEFQSGHTADVLSVSISGS----NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG  266 (389)
Q Consensus       195 ----~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  266 (389)
                          ..+..............+++-|.    ...++.+-+.||.+.+|+-+..  ....+.+.---...++|.+.-+.|+
T Consensus       113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~--~f~~~lp~~llPgPl~Y~~~tDsfv  190 (418)
T PF14727_consen  113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF--AFSRFLPDFLLPGPLCYCPRTDSFV  190 (418)
T ss_pred             cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE--EEEEEcCCCCCCcCeEEeecCCEEE
Confidence                01000000122233444444432    2478888999999999997643  2222222222234478888888999


Q ss_pred             EEecCCeEEEEEC
Q 016458          267 TGSDDGTCRLFDI  279 (389)
Q Consensus       267 ~~~~dg~i~i~d~  279 (389)
                      +++.+..+..|..
T Consensus       191 t~sss~~l~~Yky  203 (418)
T PF14727_consen  191 TASSSWTLECYKY  203 (418)
T ss_pred             EecCceeEEEecH
Confidence            9999999998875

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.40  E-value=0.068  Score=45.65  Aligned_cols=247  Identities=13%  Similarity=0.111  Sum_probs=117.5

Q ss_pred             cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCe---eEEE----eeCCCcEEEEEECCC---CcEEE-EecCC-------
Q 016458           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQK---THAI----KLPCAWVMTCAFSPT---GQSVA-CGGLD-------  130 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~l~-~~~~d-------  130 (389)
                      ..++|+|.|+|++|++ ...|.|++++ ..+..   +..+    .........++++|+   ..+|. +.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3578999999877665 5699999999 44443   2222    122356899999994   33333 33311       


Q ss_pred             -CcEEEEeCCCCCCCCC-CCcceeeecc---cccceEEEEEeeCCCcEEEEeeCC-------------CeEEEEeCCCCe
Q 016458          131 -SVCSIFNLNSPTDKDG-NLPVSRMLSG---HKGYVSCCQYVPDEDTHLITSSGD-------------QTCVLWDITTGL  192 (389)
Q Consensus       131 -g~i~vw~~~~~~~~~~-~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~  192 (389)
                       ..|.-|.......... ...+......   ....-..|.|.|++ .++++.+..             |.|.-.+... .
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~  158 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-S  158 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-S
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccC-c
Confidence             2344444443210000 0011111111   22334569999998 555554432             2333333221 1


Q ss_pred             eEEEecC--------c-ccCCCCCCeeEEEeeCCCCcEEEEee-CCCceEEEeCCCC-----------------------
Q 016458          193 RTSVFGG--------E-FQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVA-----------------------  239 (389)
Q Consensus       193 ~~~~~~~--------~-~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-----------------------  239 (389)
                      .....+.        + +..++ .....++|+|..+.++++=. .++.=.|.-+..+                       
T Consensus       159 ~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~  237 (331)
T PF07995_consen  159 IPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP  237 (331)
T ss_dssp             B-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred             CCCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence            0000000        0 00111 23467899984366554421 1221112111110                       


Q ss_pred             -----CcceeEEeeeccceEEEEEec-------CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC
Q 016458          240 -----SRAVRTFHGHEGDVNTVKFFP-------DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  307 (389)
Q Consensus       240 -----~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (389)
                           ..+...+..| ..+..+.|..       .+.+|++.-..+.|....+.....+....... ......+..+++.|
T Consensus       238 ~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~r~~~v~~~p  315 (331)
T PF07995_consen  238 SCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL-GGFGGRPRDVAQGP  315 (331)
T ss_dssp             S-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC-TTSSS-EEEEEEET
T ss_pred             CCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc-ccCCCCceEEEEcC
Confidence                 0123333333 4566777764       45566666667788888887554332222211 12222589999999


Q ss_pred             CCCEEEEEecCCcEE
Q 016458          308 SGRLLFAGYSNGDCY  322 (389)
Q Consensus       308 ~~~~l~~~~~dg~i~  322 (389)
                      ||.+.++.+.+|.|+
T Consensus       316 DG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  316 DGALYVSDDSDGKIY  330 (331)
T ss_dssp             TSEEEEEE-TTTTEE
T ss_pred             CCeEEEEECCCCeEe
Confidence            999888888888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.37  E-value=0.14  Score=48.67  Aligned_cols=203  Identities=16%  Similarity=0.207  Sum_probs=120.5

Q ss_pred             cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCC---CCCeeEEEeeC---------------CCCcEEEEeeCCCceEE
Q 016458          172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH---TADVLSVSISG---------------SNSRMFVSGSCDSTARL  233 (389)
Q Consensus       172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~---------------~~~~~l~~~~~dg~i~i  233 (389)
                      ..++.++.++.|.-.|..+++.+..+........   ......+.+..               .....++.++.|+.+.-
T Consensus       195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA  274 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA  274 (764)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence            4677788889999999999999888754321110   00112233321               12347778888999999


Q ss_pred             EeCCCCCcceeEEeeeccce-------------EEEEEec--CCCEEEEEec----------CCeEEEEECCCCceeeEe
Q 016458          234 WDTRVASRAVRTFHGHEGDV-------------NTVKFFP--DGNRFGTGSD----------DGTCRLFDIRTGHQLQVY  288 (389)
Q Consensus       234 ~d~~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~  288 (389)
                      .|.+++ +.+..+.. ++.+             ..+.-.|  .+..+++|+.          +|.|+-+|+++++....+
T Consensus       275 LDA~TG-k~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       275 LDADTG-KLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EECCCC-CEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999988 44433321 1111             1111222  2345666643          688999999999998887


Q ss_pred             eccCCCCC-------------CCCeeEEEeCCCCCEEEEEe------------------cCCcEEEEEcccceEEEeecC
Q 016458          289 YQQHGENE-------------IPHVTSIAFSISGRLLFAGY------------------SNGDCYVWDTLLAKVVLNLGS  337 (389)
Q Consensus       289 ~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~~~  337 (389)
                      ........             ...-..+++++....++.+.                  ..+.|.-.|.++|+....+..
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            54211100             00113445666555555432                  134577788899999888753


Q ss_pred             cCCCCC-------CCeeEEEECC-CCC---eEEeeeCCCeeEEeecceecccCccc
Q 016458          338 LQNSHE-------GRITCLGLSA-DGS---ALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       338 ~~~~~~-------~~v~~~~~~~-~~~---~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      .  .|+       ....=+.+.. +|+   .++.++.+|.+.+    .|..+|++.
T Consensus       433 ~--~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~v----lDr~tG~~l  482 (764)
T TIGR03074       433 V--HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYV----LDRRTGEPI  482 (764)
T ss_pred             c--CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEE----EECCCCCEE
Confidence            1  221       1111122222 553   7899999999999    999999765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.33  E-value=0.063  Score=43.79  Aligned_cols=152  Identities=16%  Similarity=0.148  Sum_probs=88.0

Q ss_pred             CeeEEEeeCCCCcEEEEee---CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEE-CCCCc
Q 016458          208 DVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD-IRTGH  283 (389)
Q Consensus       208 ~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~  283 (389)
                      .+.+.++++ ++..++...   ....++++....  .....+.  ...+..-.|++++...+....+...+++. ...+.
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGG--PVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCC--cceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence            688999999 555444433   333455554432  2222222  23678889999988777777666666663 33333


Q ss_pred             eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe---cCCcEEEEEcc---cc--eEEEeecCcCCCCCCCeeEEEECCCC
Q 016458          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTL---LA--KVVLNLGSLQNSHEGRITCLGLSADG  355 (389)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~---~~--~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (389)
                      ............  ..|+.+.+||||..++...   .++.|.+--+.   .+  ..+.............+++++|.+++
T Consensus       100 ~~~~~v~~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~  177 (253)
T PF10647_consen  100 GEPVEVDWPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS  177 (253)
T ss_pred             ceeEEecccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence            222211111110  1599999999999877765   34677766543   22  11111111112345689999999999


Q ss_pred             CeEEeeeCCCe
Q 016458          356 SALCTGSWDTN  366 (389)
Q Consensus       356 ~~l~~~~~dg~  366 (389)
                      .+++.+...+.
T Consensus       178 ~L~V~~~~~~~  188 (253)
T PF10647_consen  178 TLVVLGRSAGG  188 (253)
T ss_pred             EEEEEeCCCCC
Confidence            88777666544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.33  E-value=0.06  Score=43.49  Aligned_cols=206  Identities=14%  Similarity=0.163  Sum_probs=121.9

Q ss_pred             cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEE
Q 016458          155 SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW  234 (389)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  234 (389)
                      .+-...+.++.|+|+. +.|++......-.++=-..|..+..++..    .-.....+.+.. ++.+.++--.++.+.++
T Consensus        82 ~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~----g~~DpE~Ieyig-~n~fvi~dER~~~l~~~  155 (316)
T COG3204          82 LGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLT----GFSDPETIEYIG-GNQFVIVDERDRALYLF  155 (316)
T ss_pred             ccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEeccc----ccCChhHeEEec-CCEEEEEehhcceEEEE
Confidence            3445569999999997 55666666666666666678888887532    234456677775 66677776678888888


Q ss_pred             eCCCCCcce---------eEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCC-----CCCe
Q 016458          235 DTRVASRAV---------RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE-----IPHV  300 (389)
Q Consensus       235 d~~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~~i  300 (389)
                      .+......+         ......+.....++|+|..+.|..+-+-.-+.||.+..............+..     ...+
T Consensus       156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv  235 (316)
T COG3204         156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV  235 (316)
T ss_pred             EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence            765442111         11111255678899999988898888877788877664331111111111100     1236


Q ss_pred             eEEEeCCC-CCEEEEEecCCcEEEEEcccceEEEeecCcCCCC--C---CCeeEEEECCCCCeEEeeeCCCeeE
Q 016458          301 TSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH--E---GRITCLGLSADGSALCTGSWDTNLK  368 (389)
Q Consensus       301 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~~~~dg~i~  368 (389)
                      +++.|++. +..++.+.+++.+.-.|.. |.++..+......|  .   .....++..++|. |...|.-+..+
T Consensus       236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSEPnlfy  307 (316)
T COG3204         236 SGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEPNLFY  307 (316)
T ss_pred             ccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEecCCcce
Confidence            77888864 5566777777778778764 33333332111111  1   1345667776665 34444444443

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.24  E-value=0.076  Score=42.86  Aligned_cols=280  Identities=12%  Similarity=0.056  Sum_probs=149.8

Q ss_pred             CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeC-C-CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP-C-AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (389)
                      +-+..+.++.+  +...+..+.-++|.|+.+......+..- . +...++..  .|++..++..+.-.-+.|+..+..+ 
T Consensus        87 ~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP-  161 (370)
T COG5276          87 DLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP-  161 (370)
T ss_pred             hhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc-
Confidence            44566677654  7777777778999999876654433221 1 33344444  5888888886767788999876522 


Q ss_pred             CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG  225 (389)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  225 (389)
                         .+..........-..++.+-   ++.+.+..|+-+.+.|+........+..   ......+.++..++ +..+++..
T Consensus       162 ---~lagrya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~~---~n~g~g~~sv~vsd-nr~y~vvy  231 (370)
T COG5276         162 ---QLAGRYALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIGS---YNTGPGTYSVSVSD-NRAYLVVY  231 (370)
T ss_pred             ---eeeeeeccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEEE---EecCCceEEEEecC-CeeEEEEc
Confidence               13333333334445566653   5677778889999999987644333311   12333678888876 54455443


Q ss_pred             eCCCceEEEeCCCCCcceeEEeeeccceEEE-EEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEE
Q 016458          226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTV-KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA  304 (389)
Q Consensus       226 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~  304 (389)
                        +--+.+-|......+...-.-....+.++ .+.-.+++......+.-+.+-|+.+.............  ...-..+.
T Consensus       232 --~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~--g~~a~gi~  307 (370)
T COG5276         232 --DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTA--GYQAAGIR  307 (370)
T ss_pred             --ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCC--CccccceE
Confidence              34577778776532221111112222222 23335667777777777777777654322211110000  00011222


Q ss_pred             eCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          305 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       305 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      .  .+.++..+..+ ...+-+....+.....    .+....+.+.+.+-+.+.+.+...++.+.|    |+..
T Consensus       308 a--y~~y~yiadkn-~g~vV~~s~~s~m~~~----~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i----~~~~  369 (370)
T COG5276         308 A--YGNYNYIADKN-TGAVVDASPPSMMDKR----PGRPTIGQSCDVSVDTQIIYSTDYNGGLSI----IEYL  369 (370)
T ss_pred             E--ecCeeEeccCC-ceEEEeCCChhhcccc----cCcceEeeecceEEEeeEEEEeecCCCEEE----EEec
Confidence            2  24444444433 3444444333222221    122222333334445568888888998888    8753

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.19  E-value=0.0018  Score=36.57  Aligned_cols=32  Identities=16%  Similarity=0.278  Sum_probs=28.8

Q ss_pred             CeeEEEeCCCCCEEEEEecCCcEEEEEcccceE
Q 016458          299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  331 (389)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (389)
                      .|..++|+|...+||.++.+|.|.+|.+ +++.
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            5899999999999999999999999998 5544

>PHA03098 kelch-like protein; Provisional

Probab=97.12  E-value=0.051  Score=50.05  Aligned_cols=188  Identities=8%  Similarity=0.054  Sum_probs=87.9

Q ss_pred             CCCeEEEEecCC------cEEEEeCCCCCeeEEEeeC--CCcEEEEEECCCCcEEEEecCC-----CcEEEEeCCCCCCC
Q 016458           78 ERNRIVSASQDG------RLIVWNALTSQKTHAIKLP--CAWVMTCAFSPTGQSVACGGLD-----SVCSIFNLNSPTDK  144 (389)
Q Consensus        78 ~~~~l~~~~~dg------~v~iw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~  144 (389)
                      ++..++.|+.++      .+..||..+.+-...-..+  ......+.  -++..++.||.+     ..+..||..+..  
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--  369 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK--  369 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc--
Confidence            445666666432      4677787665442211111  11122222  267777888765     346677776533  


Q ss_pred             CCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC------CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458          145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN  218 (389)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  218 (389)
                         +.....+...... .+++. -+ +.+++.||.+      ..+..||+.+.+-...-...  ..  ..-.+++..  +
T Consensus       370 ---W~~~~~lp~~r~~-~~~~~-~~-~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~~--r~~~~~~~~--~  437 (534)
T PHA03098        370 ---WREEPPLIFPRYN-PCVVN-VN-NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--IS--HYGGCAIYH--D  437 (534)
T ss_pred             ---eeeCCCcCcCCcc-ceEEE-EC-CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--cc--ccCceEEEE--C
Confidence               1111111111111 11222 23 3667777632      46888998876544322110  11  111223333  5


Q ss_pred             CcEEEEeeCCC--------ceEEEeCCCCC-cceeEEeeeccceEEEEEecCCCEEEEEecC-----CeEEEEECCCCc
Q 016458          219 SRMFVSGSCDS--------TARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGH  283 (389)
Q Consensus       219 ~~~l~~~~~dg--------~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  283 (389)
                      +.+++.|+.++        .+.+||..+.. ..+..+.........+.+  ++++++.|+.+     +.+.+||..+.+
T Consensus       438 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        438 GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            66777776432        37888887541 111111101111112222  66677777654     467778776543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.10  E-value=0.11  Score=41.92  Aligned_cols=199  Identities=12%  Similarity=0.060  Sum_probs=116.3

Q ss_pred             ceeeeecccccC-cEEEEEEcCCCCeEEEEecCC--cEEEEeCCCCCeeEEEeeCCC-cEEEEEECCCCcEEEEecCCCc
Q 016458           57 LVCCRTLQGHAG-KVYSLDWTSERNRIVSASQDG--RLIVWNALTSQKTHAIKLPCA-WVMTCAFSPTGQSVACGGLDSV  132 (389)
Q Consensus        57 ~~~~~~l~~h~~-~v~~~~~~~~~~~l~~~~~dg--~v~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~  132 (389)
                      ...+.++..... -...+.|..++.++-+.+.-|  .|+.+|+.+++.......+.. .--.++.. +++.....-.++.
T Consensus        33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~  111 (264)
T PF05096_consen   33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT  111 (264)
T ss_dssp             EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred             eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence            455666554333 355788877887777777665  799999999998877766542 12223333 3455555667899


Q ss_pred             EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (389)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  212 (389)
                      ..+||..+-+       ....+. ..+.=+.++  .++ ..|+.+.....|.++|..+.+....+........-..++.+
T Consensus       112 ~f~yd~~tl~-------~~~~~~-y~~EGWGLt--~dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNEL  180 (264)
T PF05096_consen  112 GFVYDPNTLK-------KIGTFP-YPGEGWGLT--SDG-KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNEL  180 (264)
T ss_dssp             EEEEETTTTE-------EEEEEE--SSS--EEE--ECS-SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEE
T ss_pred             EEEEccccce-------EEEEEe-cCCcceEEE--cCC-CEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeE
Confidence            9999998633       333332 234555666  445 45666677789999999988777766433222223456667


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee---------------eccceEEEEEecCCCEEEEEec
Q 016458          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---------------HEGDVNTVKFFPDGNRFGTGSD  270 (389)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------~~~~i~~~~~~~~~~~l~~~~~  270 (389)
                      .+.  ++.+.+=.=....|...|..++ .....+..               ...-.+.|++.|..+.|.+.+.
T Consensus       181 E~i--~G~IyANVW~td~I~~Idp~tG-~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  181 EYI--NGKIYANVWQTDRIVRIDPETG-KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEE--TTEEEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EEE--cCEEEEEeCCCCeEEEEeCCCC-eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            776  5555554445566777777766 44433321               1245789999997776665554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.07  E-value=0.093  Score=40.86  Aligned_cols=208  Identities=14%  Similarity=0.118  Sum_probs=110.1

Q ss_pred             CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCC--cEEEE-ecCCCcEEEEeCCCCCCCCCCCcceeee--
Q 016458           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG--QSVAC-GGLDSVCSIFNLNSPTDKDGNLPVSRML--  154 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~--  154 (389)
                      .++.+--..|.|.-||+...+. ........+...+.+--.+  +.+++ ++..-.|--||.....     ..+..++  
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~v-~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~-----a~v~~t~~e  101 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNKV-YRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSES-----AKVYRTLFE  101 (310)
T ss_pred             eEEEEEeccCceehhhhhhhhe-EEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccce-----eeeeeeccc
Confidence            3555555567777788876443 2223332323344432222  22333 2333334445533211     0011111  


Q ss_pred             ---cccccceEEEEEeeCCCcEEEEeeC----------CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcE
Q 016458          155 ---SGHKGYVSCCQYVPDEDTHLITSSG----------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM  221 (389)
Q Consensus       155 ---~~~~~~v~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  221 (389)
                         ...+.+.++-..+|+| ++ +.|..          .|.++.|-.... . ..+     ...-.--+.++|+.+...+
T Consensus       102 v~~d~kknR~NDgkvdP~G-ry-y~GtMad~~~~le~~~g~Ly~~~~~h~-v-~~i-----~~~v~IsNgl~Wd~d~K~f  172 (310)
T KOG4499|consen  102 VQPDRKKNRLNDGKVDPDG-RY-YGGTMADFGDDLEPIGGELYSWLAGHQ-V-ELI-----WNCVGISNGLAWDSDAKKF  172 (310)
T ss_pred             cCchHHhcccccCccCCCC-ce-eeeeeccccccccccccEEEEeccCCC-c-eee-----ehhccCCccccccccCcEE
Confidence               0113455666778887 44 44432          244555543221 1 111     1222334567888755556


Q ss_pred             EEEeeCCCceEEEeCC--CCC----cceeEEee---ecc-ceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeecc
Q 016458          222 FVSGSCDSTARLWDTR--VAS----RAVRTFHG---HEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ  291 (389)
Q Consensus       222 l~~~~~dg~i~i~d~~--~~~----~~~~~~~~---~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  291 (389)
                      .++-+.+-.|.-||..  ++.    +.+..++.   ... ..-.++...+|++.++.-..|+|..+|..+++.+..+..+
T Consensus       173 Y~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP  252 (310)
T KOG4499|consen  173 YYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP  252 (310)
T ss_pred             EEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC
Confidence            6677777788778733  221    22222221   111 1234555668898888889999999999999999999876


Q ss_pred             CCCCCCCCeeEEEeCC
Q 016458          292 HGENEIPHVTSIAFSI  307 (389)
Q Consensus       292 ~~~~~~~~i~~~~~~~  307 (389)
                      ..     .++++||--
T Consensus       253 t~-----qitsccFgG  263 (310)
T KOG4499|consen  253 TP-----QITSCCFGG  263 (310)
T ss_pred             CC-----ceEEEEecC
Confidence            54     399999964

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=97.00  E-value=0.32  Score=45.89  Aligned_cols=81  Identities=23%  Similarity=0.306  Sum_probs=54.1

Q ss_pred             CcEEEEEECCCCcEEEEecCCCcEEEEeCCCC--C---CCC--CCCcceee-------ecccccceEEEEEeeCC--CcE
Q 016458          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP--T---DKD--GNLPVSRM-------LSGHKGYVSCCQYVPDE--DTH  173 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~--~---~~~--~~~~~~~~-------~~~~~~~v~~~~~~~~~--~~~  173 (389)
                      -.|..+.++|+|.+++..|..|.+ |-.+...  .   ...  ....+...       ...+...|..+.|+|.+  +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            358899999999999999887654 4444321  0   000  11111111       12345688999999974  478


Q ss_pred             EEEeeCCCeEEEEeCCCC
Q 016458          174 LITSSGDQTCVLWDITTG  191 (389)
Q Consensus       174 l~~~~~dg~i~iwd~~~~  191 (389)
                      |+.-+.|+++++||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            899999999999999764

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.099  Score=39.94  Aligned_cols=180  Identities=14%  Similarity=0.099  Sum_probs=102.3

Q ss_pred             cEEEEeeC--CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee
Q 016458          172 THLITSSG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH  249 (389)
Q Consensus       172 ~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  249 (389)
                      .++.+.+.  ...|++||+.+++.+..............++.+     ...+..-.-.+|.-..+|.++. +.+..+. .
T Consensus        57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~-~~lg~~~-y  129 (262)
T COG3823          57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTL-EELGRFS-Y  129 (262)
T ss_pred             EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHh-hhhcccc-c
Confidence            56666654  457999999999887765321101111222221     2333344456788889998876 5554443 2


Q ss_pred             ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458          250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (389)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (389)
                      ++.=..++.  |++.|+.+....+++.-|..+..................++.+.|- +|...|-.-.+..|...|..+|
T Consensus       130 ~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG  206 (262)
T COG3823         130 EGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG  206 (262)
T ss_pred             CCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence            333345544  5666777766667888777665544444332222222234445553 5655555555556666777777


Q ss_pred             eEEEeecC--------cCCCCCCCeeEEEECCCC-CeEEee
Q 016458          330 KVVLNLGS--------LQNSHEGRITCLGLSADG-SALCTG  361 (389)
Q Consensus       330 ~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~~~  361 (389)
                      +....+..        ....|....+.+++.|++ ++++||
T Consensus       207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            66554421        113455678899999977 555555

>PHA03098 kelch-like protein; Provisional

Probab=96.95  E-value=0.075  Score=48.97  Aligned_cols=187  Identities=13%  Similarity=0.031  Sum_probs=88.8

Q ss_pred             cEEEEeeCCC------eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC-----CceEEEeCCCCC
Q 016458          172 THLITSSGDQ------TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDTRVAS  240 (389)
Q Consensus       172 ~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  240 (389)
                      .+++.|+.++      .+..||..+......-..    .....-.+++..  ++.+++.|+.+     ..+..||..+..
T Consensus       296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~----~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL----IYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC----CcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            5667776542      577888887765332211    111111223322  56788888765     346778876541


Q ss_pred             cceeEEeeeccc--eEEEEEecCCCEEEEEecC------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEE
Q 016458          241 RAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL  312 (389)
Q Consensus       241 ~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (389)
                        .........+  -.+++ .-++++.+.||.+      ..+..||..+.+-...-.....  . . -.++ ...++..+
T Consensus       370 --W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~--r-~-~~~~-~~~~~~iy  441 (534)
T PHA03098        370 --WREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS--H-Y-GGCA-IYHDGKIY  441 (534)
T ss_pred             --eeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc--c-c-CceE-EEECCEEE
Confidence              1111111011  11122 2256677777732      3588899876543221111110  0 0 1122 22356666


Q ss_pred             EEEecCC--------cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC-----CeeEEeecceecccC
Q 016458          313 FAGYSNG--------DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-----TNLKVNLGFWRVQEG  379 (389)
Q Consensus       313 ~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~W~~~~~  379 (389)
                      +.|+.++        .+.+||..+.+-...- ..... ......+.+  +++.++.||.+     ..+.+    +|..+.
T Consensus       442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~----yd~~~~  513 (534)
T PHA03098        442 VIGGISYIDNIKVYNIVESYNPVTNKWTELS-SLNFP-RINASLCIF--NNKIYVVGGDKYEYYINEIEV----YDDKTN  513 (534)
T ss_pred             EECCccCCCCCcccceEEEecCCCCceeeCC-CCCcc-cccceEEEE--CCEEEEEcCCcCCcccceeEE----EeCCCC
Confidence            6665432        3888898765433221 11011 111122222  67777777765     34566    666655


Q ss_pred             c
Q 016458          380 A  380 (389)
Q Consensus       380 ~  380 (389)
                      +
T Consensus       514 ~  514 (534)
T PHA03098        514 T  514 (534)
T ss_pred             E
Confidence            3

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.93  E-value=0.14  Score=45.63  Aligned_cols=121  Identities=11%  Similarity=0.094  Sum_probs=74.9

Q ss_pred             cceEEEEEeeCC---CcEEEEeeCCCeEEEEeCCC-----CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCc
Q 016458          159 GYVSCCQYVPDE---DTHLITSSGDQTCVLWDITT-----GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST  230 (389)
Q Consensus       159 ~~v~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  230 (389)
                      ..|..+.|.|-+   ...+++......|.+|.+.-     ++.......++.....--...+.|+| ....|++-+....
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dv  135 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDV  135 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCce
Confidence            458889998852   12466677788999998862     22222211111122222345678999 6667766665555


Q ss_pred             eEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC-CeEEEEECC
Q 016458          231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-GTCRLFDIR  280 (389)
Q Consensus       231 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~  280 (389)
                      -.+++++.....++.--...+-|.|.+|.+||+.|+++-.. =.-++||-.
T Consensus       136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            55666665544444333456789999999999988766433 346788844

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.93  E-value=0.019  Score=54.60  Aligned_cols=152  Identities=13%  Similarity=0.070  Sum_probs=94.3

Q ss_pred             ceEEEEEeeCCCcE-EEEeeCCCeEEEEeCCCCeeEEEecCc------ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceE
Q 016458          160 YVSCCQYVPDEDTH-LITSSGDQTCVLWDITTGLRTSVFGGE------FQSGHTADVLSVSISGSNSRMFVSGSCDSTAR  232 (389)
Q Consensus       160 ~v~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  232 (389)
                      ++..+...+|+.-. ++..+.+-.|..||++.-.........      ..........++.|+|.-....++...|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            44455555654222 333334457889998764322211000      00123344667888886566677788899999


Q ss_pred             EEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEE
Q 016458          233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL  312 (389)
Q Consensus       233 i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (389)
                      +..+......+..+ .-....++++|+|.|+.++.|-..|++.-|... .+....+...... ....|.+++|-....++
T Consensus       182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~-e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVE-ENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             hhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcC-CCcceeEEEEecceeEE
Confidence            98877553333332 245568999999999999999999999999754 3333333332222 23568999998766666


Q ss_pred             EE
Q 016458          313 FA  314 (389)
Q Consensus       313 ~~  314 (389)
                      ++
T Consensus       259 vv  260 (1405)
T KOG3630|consen  259 VV  260 (1405)
T ss_pred             EE
Confidence            54

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.90  E-value=0.18  Score=46.25  Aligned_cols=201  Identities=15%  Similarity=0.177  Sum_probs=100.4

Q ss_pred             CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCe
Q 016458          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV  209 (389)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  209 (389)
                      --.|+||+.....       +....-.| +.+..+.|+.+  ..|++...+|++++|++...... ...... ......|
T Consensus        63 ~~~I~If~~sG~l-------L~~~~w~~-~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge~ie-~~svg~-e~~~~~I  130 (829)
T KOG2280|consen   63 RPYIRIFNISGQL-------LGRILWKH-GELIGMGWSDD--EELICVQKDGTVHVYGLLGEFIE-SNSVGF-ESQMSDI  130 (829)
T ss_pred             ceeEEEEeccccc-------hHHHHhcC-CCeeeecccCC--ceEEEEeccceEEEeecchhhhc-cccccc-ccccCce
Confidence            3458888876522       22222223 37888999986  46888999999999998643322 211100 2233345


Q ss_pred             eEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee---eccceEEEEEecCCC---EEEEEe-cCCeEEEEECCCC
Q 016458          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---HEGDVNTVKFFPDGN---RFGTGS-DDGTCRLFDIRTG  282 (389)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~---~l~~~~-~dg~i~i~d~~~~  282 (389)
                      ..+.+.. +|  +++-..+|.+.+-.-... .....+..   ...+-.|-...+++.   .++-.. ..+ ..++-....
T Consensus       131 ~ec~~f~-~G--Vavlt~~g~v~~i~~~~~-~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~  205 (829)
T KOG2280|consen  131 VECRFFH-NG--VAVLTVSGQVILINGVEE-PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEES  205 (829)
T ss_pred             eEEEEec-Cc--eEEEecCCcEEEEcCCCc-chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecc
Confidence            5555553 44  333334455554432211 12222211   111112222222211   111111 010 011111111


Q ss_pred             c-eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458          283 H-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (389)
Q Consensus       283 ~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (389)
                      . ....+...     ...+..+..||++++|+.=+..|.|.+-+....+....+..  ..| .+...++|..+.
T Consensus       206 ~~q~~~~~~~-----~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~--~~~-~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  206 RVQLHALSWP-----NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC--TDH-DPPKQMAWCGND  271 (829)
T ss_pred             cccccccCCC-----CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC--CCC-CchHhceeecCC
Confidence            1 11111111     12488899999999999999999999999888877777642  122 233367776544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.88  E-value=0.098  Score=46.53  Aligned_cols=160  Identities=9%  Similarity=0.090  Sum_probs=92.6

Q ss_pred             CCeeEEEeeCCCCcEEEEee--CCCceEEEeCCCCCcceeEEeeeccceEEEEEecC----CCEEEEEecCCeEEEEECC
Q 016458          207 ADVLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD----GNRFGTGSDDGTCRLFDIR  280 (389)
Q Consensus       207 ~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~i~i~d~~  280 (389)
                      .++..++|.. +...+++.-  .+|.+++=|.    ..+.+    -..|..++|.|-    ...|++.-....|.+|.+.
T Consensus        20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGds----~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGDS----KVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             ccccceEecC-CCEEEEEeeeeeCCccccCCc----cEeec----cceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            4688899984 444454432  3444443332    22222    234889999983    3345555667799999875


Q ss_pred             C-----CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458          281 T-----GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (389)
Q Consensus       281 ~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (389)
                      .     .+.+..........-.---..+.|+|....|++-+....-.++++..........   -...+.|.|.+|.+||
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD---i~~~G~IhCACWT~DG  167 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD---IKTSGLIHCACWTKDG  167 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEe---ccCCceEEEEEecCcC
Confidence            2     2222222111111111113567899999988887666555566665433222221   2456789999999999


Q ss_pred             CeEEeeeCC-CeeEEeecceecccCccc
Q 016458          356 SALCTGSWD-TNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       356 ~~l~~~~~d-g~i~i~~~~W~~~~~~~~  382 (389)
                      +.|+.+-.. =.-+|    ||-....+.
T Consensus       168 ~RLVVAvGSsLHSyi----Wd~~qKtL~  191 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYI----WDSAQKTLH  191 (671)
T ss_pred             CEEEEEeCCeEEEEE----ecCchhhhh
Confidence            988776544 23455    986655443

>PHA02790 Kelch-like protein; Provisional

Probab=96.87  E-value=0.16  Score=46.04  Aligned_cols=190  Identities=9%  Similarity=0.023  Sum_probs=92.3

Q ss_pred             cEEEEeeCCC-----eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC--CceEEEeCCCCCccee
Q 016458          172 THLITSSGDQ-----TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--STARLWDTRVASRAVR  244 (389)
Q Consensus       172 ~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~  244 (389)
                      .+++.||.++     .+..||..++.....-+.    .....-.+++..  ++.+.+.|+.+  ..+..||....  ...
T Consensus       273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m----~~~r~~~~~v~~--~~~iYviGG~~~~~sve~ydp~~n--~W~  344 (480)
T PHA02790        273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPM----NSPRLYASGVPA--NNKLYVVGGLPNPTSVERWFHGDA--AWV  344 (480)
T ss_pred             EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCC----CchhhcceEEEE--CCEEEEECCcCCCCceEEEECCCC--eEE
Confidence            5667777543     577788887654443211    111111222222  67787888764  35777876543  111


Q ss_pred             EEeeeccceEE-EEEecCCCEEEEEecCC---eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCc
Q 016458          245 TFHGHEGDVNT-VKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD  320 (389)
Q Consensus       245 ~~~~~~~~i~~-~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  320 (389)
                      ....-..+... ....-+|++.+.||.++   .+..||.++.+-...-......   .....+  .-+++..+.|   |.
T Consensus       345 ~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r---~~~~~~--~~~~~IYv~G---G~  416 (480)
T PHA02790        345 NMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH---YKSCAL--VFGRRLFLVG---RN  416 (480)
T ss_pred             ECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc---ccceEE--EECCEEEEEC---Cc
Confidence            11111111111 11122677777777553   4678887765432211111100   011122  2356555655   45


Q ss_pred             EEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC-----CeeEEeecceecccCcccCcc
Q 016458          321 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-----TNLKVNLGFWRVQEGALSPWG  385 (389)
Q Consensus       321 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~W~~~~~~~~~~~  385 (389)
                      +.+||..+.+-... ....... .....+.  -+++..+.||.+     ..+..    +|..+++-..|-
T Consensus       417 ~e~ydp~~~~W~~~-~~m~~~r-~~~~~~v--~~~~IYviGG~~~~~~~~~ve~----Yd~~~~~W~~~~  478 (480)
T PHA02790        417 AEFYCESSNTWTLI-DDPIYPR-DNPELII--VDNKLLLIGGFYRGSYIDTIEV----YNNRTYSWNIWD  478 (480)
T ss_pred             eEEecCCCCcEeEc-CCCCCCc-cccEEEE--ECCEEEEECCcCCCcccceEEE----EECCCCeEEecC
Confidence            77888876543322 1111111 1122222  267788888765     34666    888877766553

>PHA02790 Kelch-like protein; Provisional

Probab=96.78  E-value=0.22  Score=45.12  Aligned_cols=186  Identities=9%  Similarity=-0.012  Sum_probs=84.6

Q ss_pred             CCCeEEEEecCC-----cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCC--cEEEEeCCCCCCCCCCCcc
Q 016458           78 ERNRIVSASQDG-----RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS--VCSIFNLNSPTDKDGNLPV  150 (389)
Q Consensus        78 ~~~~l~~~~~dg-----~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~  150 (389)
                      ++..+++|+.++     ++..||..+..-......+..........-++...+.||.++  .+..|+...+.     +..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~-----W~~  345 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAA-----WVN  345 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCe-----EEE
Confidence            345667777543     466778766543222111111111111123677778887643  56777765422     111


Q ss_pred             eeeecccccceEEEEEeeCCCcEEEEeeCCC---eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458          151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ---TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (389)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (389)
                      ...+....... +++ .-++ .+.+.||.++   .+..||..+..-...-+.    .....-.+++..  ++.+.+.|  
T Consensus       346 ~~~l~~~r~~~-~~~-~~~g-~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m----~~~r~~~~~~~~--~~~IYv~G--  414 (480)
T PHA02790        346 MPSLLKPRCNP-AVA-SINN-VIYVIGGHSETDTTTEYLLPNHDQWQFGPST----YYPHYKSCALVF--GRRLFLVG--  414 (480)
T ss_pred             CCCCCCCCccc-EEE-EECC-EEEEecCcCCCCccEEEEeCCCCEEEeCCCC----CCccccceEEEE--CCEEEEEC--
Confidence            11111111111 122 2233 6777777553   477889877655433211    111111223222  56666766  


Q ss_pred             CCceEEEeCCCCC-cceeEEeeeccceEEEEEecCCCEEEEEecC-----CeEEEEECCCC
Q 016458          228 DSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTG  282 (389)
Q Consensus       228 dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~  282 (389)
                       |.+.+||.++.. ..+..+....... +++. -++++.++||.+     ..+..||..+.
T Consensus       415 -G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        415 -RNAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             -CceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence             357788886541 1111111111112 2222 266777777754     24556665543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.73  E-value=0.00058  Score=58.30  Aligned_cols=150  Identities=12%  Similarity=0.168  Sum_probs=103.5

Q ss_pred             EEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC
Q 016458          112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG  191 (389)
Q Consensus       112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  191 (389)
                      .....|-+.+..++.++.+..+..||-....         ......++....++|..+++..++.+-..+.+.+||+.+.
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~---------~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~e  107 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV---------ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE  107 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhcce---------ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhh
Confidence            3455677877779999999999999866421         1112234566778898888888888999999999999875


Q ss_pred             eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC
Q 016458          192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  271 (389)
Q Consensus       192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  271 (389)
                      .....-     .+....-.-+.|++ ....++.+...|.+.+++.... +.....-.|...++++++.+.+ +.+.++.|
T Consensus       108 ytqqLE-----~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgts-R~iiv~Gkh~RRgtq~av~lEd-~vil~dcd  179 (615)
T KOG2247|consen  108 YTQQLE-----SGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTS-RRIIVMGKHQRRGTQIAVTLED-YVILCDCD  179 (615)
T ss_pred             hHHHHh-----ccCcchHHHHhhcc-CCccccccccccceEEEeccch-hhhhhhcccccceeEEEecccc-eeeecCcH
Confidence            332211     11111122267887 7777888889999999998876 4444444488889999999876 45556666


Q ss_pred             CeEEEEE
Q 016458          272 GTCRLFD  278 (389)
Q Consensus       272 g~i~i~d  278 (389)
                      ..+.+-.
T Consensus       180 ~~L~v~~  186 (615)
T KOG2247|consen  180 NTLSVTT  186 (615)
T ss_pred             HHHHHhh
Confidence            5554443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.64  E-value=0.32  Score=40.59  Aligned_cols=277  Identities=11%  Similarity=0.058  Sum_probs=124.9

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee-EEEe--eC---CCcEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-HAIK--LP---CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS  140 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~--~~---~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~  140 (389)
                      ..++.+|.|..+..-+++|. .+.|  +...++-.. ....  ..   .-...++.|..+ ..+++| ..+ +.+...+.
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~Dg   89 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTDG   89 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESST
T ss_pred             CCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecCC
Confidence            44799999996666666654 4543  444333221 1111  11   123667777543 444444 444 33333333


Q ss_pred             CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (389)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (389)
                      +.    .+.....-..-.+....+....++  ....++..|.|..=. ..+..-....    ......+..+..++ ++.
T Consensus        90 G~----tW~~v~l~~~lpgs~~~i~~l~~~--~~~l~~~~G~iy~T~-DgG~tW~~~~----~~~~gs~~~~~r~~-dG~  157 (302)
T PF14870_consen   90 GK----TWERVPLSSKLPGSPFGITALGDG--SAELAGDRGAIYRTT-DGGKTWQAVV----SETSGSINDITRSS-DGR  157 (302)
T ss_dssp             TS----S-EE----TT-SS-EEEEEEEETT--EEEEEETT--EEEES-STTSSEEEEE-----S----EEEEEE-T-TS-
T ss_pred             CC----CcEEeecCCCCCCCeeEEEEcCCC--cEEEEcCCCcEEEeC-CCCCCeeEcc----cCCcceeEeEEECC-CCc
Confidence            32    121111111122333444554543  344445555543322 2333222221    34456788888887 888


Q ss_pred             EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeecc--CCCCCCC
Q 016458          221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ--HGENEIP  298 (389)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~  298 (389)
                      +++++.....+.-||.-.. .-...-......|..+.|.|++.+.+.+ ..|.|++=+...  ....+...  .......
T Consensus       158 ~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~--~~~~w~~~~~~~~~~~~  233 (302)
T PF14870_consen  158 YVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD--DGETWSEPIIPIKTNGY  233 (302)
T ss_dssp             EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--EEEEE---B-TTSS--S
T ss_pred             EEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC--CccccccccCCcccCce
Confidence            8888766555667775432 1111122235679999999998766644 888888877222  22222221  1112223


Q ss_pred             CeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      .+..++|.+++...++|+. |. .+.....|+.-...... ..-...++.|.|.++.+- .+.+.+|.+--
T Consensus       234 ~~ld~a~~~~~~~wa~gg~-G~-l~~S~DgGktW~~~~~~-~~~~~n~~~i~f~~~~~g-f~lG~~G~ll~  300 (302)
T PF14870_consen  234 GILDLAYRPPNEIWAVGGS-GT-LLVSTDGGKTWQKDRVG-ENVPSNLYRIVFVNPDKG-FVLGQDGVLLR  300 (302)
T ss_dssp             -EEEEEESSSS-EEEEEST-T--EEEESSTTSS-EE-GGG-TTSSS---EEEEEETTEE-EEE-STTEEEE
T ss_pred             eeEEEEecCCCCEEEEeCC-cc-EEEeCCCCccceECccc-cCCCCceEEEEEcCCCce-EEECCCcEEEE
Confidence            4889999998877776654 43 34455555554443211 234556888888765444 44566777654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.64  E-value=0.037  Score=52.81  Aligned_cols=150  Identities=9%  Similarity=-0.037  Sum_probs=94.0

Q ss_pred             cEEEEEECCCCcEEEEec--CCCcEEEEeCCCCCCCC----CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEE
Q 016458          111 WVMTCAFSPTGQSVACGG--LDSVCSIFNLNSPTDKD----GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV  184 (389)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  184 (389)
                      ++..+...+|+...++..  .+-.|..||+..-....    ..+..............++.|+|.-....+....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            455566666766555443  33478899988633111    011111122222345678889987656677888899999


Q ss_pred             EEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee----eccceEEEEEec
Q 016458          185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG----HEGDVNTVKFFP  260 (389)
Q Consensus       185 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~~~~~~~  260 (389)
                      +..+........-     .......++++|+| .+..++.|...|++.-|...-.  ....+.+    ....|.+|+|-.
T Consensus       182 V~~~~~~~~~v~s-----~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~le--ik~~ip~Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTS-----FPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLE--IKSEIPEPPVEENYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhcc-----cCcccceeeEEecc-ccceeeEecCCCeEEEeecccc--eeecccCCCcCCCcceeEEEEec
Confidence            8876543332221     24556789999999 8899999999999999876522  1112111    145689999987


Q ss_pred             CCCEEEEE
Q 016458          261 DGNRFGTG  268 (389)
Q Consensus       261 ~~~~l~~~  268 (389)
                      ...++++-
T Consensus       254 t~eflvvy  261 (1405)
T KOG3630|consen  254 TQEFLVVY  261 (1405)
T ss_pred             ceeEEEEe
Confidence            76666654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.61  E-value=0.7  Score=44.14  Aligned_cols=164  Identities=15%  Similarity=0.160  Sum_probs=92.8

Q ss_pred             cEEEEeeCCCeEEEEeCCCCeeEEEecCccc----C---CCCCCeeEEEeeCC-CCcEEEEeeC----------CCceEE
Q 016458          172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQ----S---GHTADVLSVSISGS-NSRMFVSGSC----------DSTARL  233 (389)
Q Consensus       172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~---~~~~~v~~~~~~~~-~~~~l~~~~~----------dg~i~i  233 (389)
                      ..++.++.|+.|.-.|..+++....+...-.    .   .....-..+.-.|- .++.+++|+.          +|.|+-
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A  340 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA  340 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence            4688889999999999999998877632100    0   00000000111110 1235555542          688999


Q ss_pred             EeCCCCCcceeEEee-e--------cc--------ce-EEEEEecCCCEEEEEe------------------cCCeEEEE
Q 016458          234 WDTRVASRAVRTFHG-H--------EG--------DV-NTVKFFPDGNRFGTGS------------------DDGTCRLF  277 (389)
Q Consensus       234 ~d~~~~~~~~~~~~~-~--------~~--------~i-~~~~~~~~~~~l~~~~------------------~dg~i~i~  277 (389)
                      +|.+++ +.+-.+.. .        .+        .+ ...+++|+..+++.+.                  ..+.|.-.
T Consensus       341 ~Da~TG-kl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL  419 (764)
T TIGR03074       341 FDVNTG-ALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL  419 (764)
T ss_pred             EECCCC-cEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence            999988 43333321 0        00        01 2344555444444322                  23567778


Q ss_pred             ECCCCceeeEeeccCCCCCC----CCeeEEEeCC-CCC---EEEEEecCCcEEEEEcccceEEEeec
Q 016458          278 DIRTGHQLQVYYQQHGENEI----PHVTSIAFSI-SGR---LLFAGYSNGDCYVWDTLLAKVVLNLG  336 (389)
Q Consensus       278 d~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~-~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~  336 (389)
                      |.++++....+...+.....    ....-+.+.. +|+   .++.++.+|.++++|..+|+.+....
T Consensus       420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             eCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            88889888777653322111    0111122322 553   88999999999999999999887653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.58  E-value=0.32  Score=39.84  Aligned_cols=215  Identities=15%  Similarity=0.128  Sum_probs=120.5

Q ss_pred             ceEEEEEeeCCCcEEEEeeCCCeEEEEeCC------CC-eeEEEecCcccCCCCCCeeEEEeeCCC-----------CcE
Q 016458          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDIT------TG-LRTSVFGGEFQSGHTADVLSVSISGSN-----------SRM  221 (389)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~------~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~  221 (389)
                      .-+.|+++|.+ .+-++....+...+||..      .. .....++...........+.+.|+...           ...
T Consensus        24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            45789999987 567777778899999986      11 222333211111233457777777421           123


Q ss_pred             EEEeeCCCceEEEeCCCCCc----ceeEEeee-ccc-eEEEEEec--CCCEEEEE-ecCCeEEEEECCCCceee--Eeec
Q 016458          222 FVSGSCDSTARLWDTRVASR----AVRTFHGH-EGD-VNTVKFFP--DGNRFGTG-SDDGTCRLFDIRTGHQLQ--VYYQ  290 (389)
Q Consensus       222 l~~~~~dg~i~i~d~~~~~~----~~~~~~~~-~~~-i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~--~~~~  290 (389)
                      ++.+++||+|.-|.......    ....+... .+. ...+++..  .+.+|+.+ -..++|.+||-.-.+...  .+..
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D  182 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID  182 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence            67788999999998643322    11222211 122 34556554  35566554 468899999854322210  1111


Q ss_pred             cCCCCCCCC-----------eeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC------
Q 016458          291 QHGENEIPH-----------VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA------  353 (389)
Q Consensus       291 ~~~~~~~~~-----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~------  353 (389)
                      ..-+....+           |+-..-.++++.=+.|-.-|.|-+||+ .+..++.+..  .+.-.....|+..|      
T Consensus       183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as--~g~LNaPWG~a~APa~FG~~  259 (336)
T TIGR03118       183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVAS--SGRLNAPWGLAIAPESFGSL  259 (336)
T ss_pred             CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEecc--CCcccCCceeeeChhhhCCC
Confidence            100100011           111111222222233444578999997 5666666632  44555667777765      


Q ss_pred             CCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          354 DGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       354 ~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      .+.+|+---.||+|..    +|..+|+..
T Consensus       260 sg~lLVGNFGDG~Ina----FD~~sG~~~  284 (336)
T TIGR03118       260 SGALLVGNFGDGTINA----YDPQSGAQL  284 (336)
T ss_pred             CCCeEEeecCCceeEE----ecCCCCcee
Confidence            5678887778999999    999888744

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.55  E-value=0.37  Score=41.97  Aligned_cols=149  Identities=12%  Similarity=0.132  Sum_probs=78.3

Q ss_pred             CCeeEEEeeCCCCcEEEEee-----------CCC-ceEEEeCCCCC-c--ceeEEeeeccceEEEEEecCCCEEEEEecC
Q 016458          207 ADVLSVSISGSNSRMFVSGS-----------CDS-TARLWDTRVAS-R--AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  271 (389)
Q Consensus       207 ~~v~~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~~~-~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  271 (389)
                      .....++|.+ +++++++-.           ..+ .|.+++-.... .  ....+.........+++.+++  |++++..
T Consensus        14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP   90 (367)
T ss_pred             CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence            4567788887 677766542           223 67776544321 1  123333333456889999888  4444444


Q ss_pred             CeEEEE-ECCCC-----ceeeEeeccCCC--CCCCCeeEEEeCCCCCEEEEEecC-------------------CcEEEE
Q 016458          272 GTCRLF-DIRTG-----HQLQVYYQQHGE--NEIPHVTSIAFSISGRLLFAGYSN-------------------GDCYVW  324 (389)
Q Consensus       272 g~i~i~-d~~~~-----~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d-------------------g~i~i~  324 (389)
                       .|..| |....     +....+......  ........++|.|||.+.++-+..                   |.|.-+
T Consensus        91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence             34444 44321     111111111111  012347789999999865543321                   345555


Q ss_pred             EcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC
Q 016458          325 DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  364 (389)
Q Consensus       325 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  364 (389)
                      +...++.. .+.   .++ .....++|+++|+++++-..+
T Consensus       170 ~pdg~~~e-~~a---~G~-rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       170 NPDGGKLR-VVA---HGF-QNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             ecCCCeEE-EEe---cCc-CCCccceECCCCCEEEEccCC
Confidence            55544432 221   232 345689999999887765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=96.53  E-value=0.54  Score=41.92  Aligned_cols=275  Identities=13%  Similarity=0.068  Sum_probs=139.3

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC-CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (389)
                      ..+|.++.++..| .+..|+.|| +..||..+++.++...... .+|..+.-+-.+. |.+|+.+| |.+.+....... 
T Consensus       164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~s-  238 (671)
T COG3292         164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRAS-  238 (671)
T ss_pred             CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhcccc-
Confidence            4468889998887 667788887 6778888887776655544 5566655554554 66677666 566665541100 


Q ss_pred             CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG  225 (389)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  225 (389)
                           ..-..-..+.|..+.-..+  ..+-.|+..|..+.--.+.+-.....+ .  ....+.|.++.... ++ -+-++
T Consensus       239 -----n~~~~lp~~~I~ll~qD~q--G~lWiGTenGl~r~~l~rq~Lq~~~~~-~--~l~~S~vnsL~~D~-dG-sLWv~  306 (671)
T COG3292         239 -----NWGPMLPSGNILLLVQDAQ--GELWIGTENGLWRTRLPRQGLQIPLSK-M--HLGVSTVNSLWLDT-DG-SLWVG  306 (671)
T ss_pred             -----ccCCCCcchheeeeecccC--CCEEEeecccceeEecCCCCccccccc-c--CCccccccceeecc-CC-CEeee
Confidence                 0001112234444433333  356777777755433322222222111 0  12223455555543 33 34556


Q ss_pred             eCCCceEEEeCCCCCcceeEEeeeccc-eEEEEEec--CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeE
Q 016458          226 SCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS  302 (389)
Q Consensus       226 ~~dg~i~i~d~~~~~~~~~~~~~~~~~-i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~  302 (389)
                      +.+|.+++-+-. . .....+....+. +..++..|  .+..+-....-|.+.+-+-.++..........+.    .|+.
T Consensus       307 t~~giv~~~~a~-w-~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~----nit~  380 (671)
T COG3292         307 TYGGIVRYLTAD-W-KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGM----NITT  380 (671)
T ss_pred             ccCceEEEecch-h-hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeecccc----ccch
Confidence            666666554432 1 111112211111 11111122  1112222222233444444445444443332222    2677


Q ss_pred             EEeCCCCCEEEEEecCCcEEEEEccc-ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          303 IAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       303 ~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      +++..+|. +-.|+...-+.-|+..+ +.......   ....++|..+.=.|+++ |..|+.+|.++.
T Consensus       381 ~~~d~~g~-lWlgs~q~GLsrl~n~n~~avlde~a---gl~ss~V~aived~dns-LWIGTs~Glvk~  443 (671)
T COG3292         381 TLEDSRGR-LWLGSMQNGLSRLDNKNEWAVLDEDA---GLPSSEVSAIVEDPDNS-LWIGTSGGLVKR  443 (671)
T ss_pred             hhhccCCc-EEEEecccchhhhccCCccccccccc---CCcccceeeeeecCCCC-EEEeccCCeEec
Confidence            77777554 44455554466666655 33333332   34567888888889888 888999998874

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.43  E-value=0.91  Score=43.31  Aligned_cols=117  Identities=11%  Similarity=0.016  Sum_probs=66.9

Q ss_pred             eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecC---C---CEEEEEecCCeEEEEEC-CC
Q 016458          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD---G---NRFGTGSDDGTCRLFDI-RT  281 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~---~---~~l~~~~~dg~i~i~d~-~~  281 (389)
                      ++....+. +...++.++.++.+...++....-....-...+..|.|+.++|-   .   +++++|..+..+.+.-. .+
T Consensus       490 ~ti~~~~~-n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd  568 (1096)
T KOG1897|consen  490 ITIGVVSA-NASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD  568 (1096)
T ss_pred             eEEEEEee-cceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence            33333333 44566777777777777777653111222234567999999983   2   26888887766554433 33


Q ss_pred             CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          282 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      ....... ......-...|.-.+|-.|..+|.++..||.+.-|-+.
T Consensus       569 ~~~~~~~-~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d  613 (1096)
T KOG1897|consen  569 LILITHE-QLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD  613 (1096)
T ss_pred             cceeeee-ccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence            3222222 11111111235555666678899999999988765544

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.42  E-value=0.21  Score=45.88  Aligned_cols=113  Identities=15%  Similarity=0.191  Sum_probs=71.2

Q ss_pred             eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEe--cCCCEEEEEecCCeEEEEECC------
Q 016458          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIR------  280 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~------  280 (389)
                      +.-+.-+. -++..++.+....+.|||.+.........-...+.|..+.|.  |+++.+++.|..+.|.+|.-.      
T Consensus        32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            34444443 444555555566899999987632222222346789999986  488999999999999998642      


Q ss_pred             ---CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458          281 ---TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       281 ---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (389)
                         +...+..+....  ....+|.+..|-++|.+++.+  ++.+.|+|-
T Consensus       111 ~~p~w~~i~~i~i~~--~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  111 KGPSWAPIRKIDISS--HTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             CCcccceeEEEEeec--CCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence               122333332221  122358899999999766544  346888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.39  E-value=0.49  Score=40.41  Aligned_cols=153  Identities=18%  Similarity=0.242  Sum_probs=86.9

Q ss_pred             CCCeeEEEeeCCCCcEEEEeeCCCc------eEEEeCCCCC---ccee-----EEeeecc--------ceEEEEEecCCC
Q 016458          206 TADVLSVSISGSNSRMFVSGSCDST------ARLWDTRVAS---RAVR-----TFHGHEG--------DVNTVKFFPDGN  263 (389)
Q Consensus       206 ~~~v~~~~~~~~~~~~l~~~~~dg~------i~i~d~~~~~---~~~~-----~~~~~~~--------~i~~~~~~~~~~  263 (389)
                      -+.+..+.+.+ ++..+++.+.+|.      +..+++....   ..+.     .+....+        ..-+|++.+++.
T Consensus        19 ~GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            35567788876 3344555556666      5555544310   0111     1111111        344788877888


Q ss_pred             EEEEEecC------CeEEEEECCCCceeeEeeccC----------CCCCCCCeeEEEeCCCCCEEEEEec-----CC--c
Q 016458          264 RFGTGSDD------GTCRLFDIRTGHQLQVYYQQH----------GENEIPHVTSIAFSISGRLLFAGYS-----NG--D  320 (389)
Q Consensus       264 ~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~----------~~~~~~~i~~~~~~~~~~~l~~~~~-----dg--~  320 (389)
                      ++++.-.+      ..|..++.. ++....+..+.          .......+-+++++|+|+.|+++..     |+  .
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            88777777      789999976 66655542211          1223345889999999997666543     22  1


Q ss_pred             -------EEEE--Eccc-ceEEEeecCcCCC-----CCCCeeEEEECCCCCeEEe
Q 016458          321 -------CYVW--DTLL-AKVVLNLGSLQNS-----HEGRITCLGLSADGSALCT  360 (389)
Q Consensus       321 -------i~i~--d~~~-~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~  360 (389)
                             ++++  |..+ +.....+......     ....|+.+.+.+++++|+.
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                   4454  4443 3223222211122     4568999999999987764

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.33  E-value=0.64  Score=40.52  Aligned_cols=148  Identities=11%  Similarity=0.135  Sum_probs=79.0

Q ss_pred             cEEEEEEcCCCCeEEEEe-----------cCC-cEEEEeCCC--CCe--eEEEeeCCCcEEEEEECCCCcEEEEecCCCc
Q 016458           69 KVYSLDWTSERNRIVSAS-----------QDG-RLIVWNALT--SQK--THAIKLPCAWVMTCAFSPTGQSVACGGLDSV  132 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~-----------~dg-~v~iw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (389)
                      ....|+|.++|+++++-.           ..+ .|.+++-.+  ++.  ...+.........+++.+++  |+++.....
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence            466899999998777643           223 677776433  332  23333333456889999888  444444433


Q ss_pred             EEEEeCCCCCCCCCCCc-ceeeecc----cccceEEEEEeeCCCcEEEEeeC-------------------CCeEEEEeC
Q 016458          133 CSIFNLNSPTDKDGNLP-VSRMLSG----HKGYVSCCQYVPDEDTHLITSSG-------------------DQTCVLWDI  188 (389)
Q Consensus       133 i~vw~~~~~~~~~~~~~-~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~-------------------dg~i~iwd~  188 (389)
                      .++.+.+.......... +...+..    +......+.|.|+| .+.++-+.                   .|.|..++.
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            33435443221111111 1122222    13446789999997 44443331                   145666666


Q ss_pred             CCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee
Q 016458          189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS  226 (389)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  226 (389)
                      .++... .+     ...-.....++|++ .++++++-.
T Consensus       172 dg~~~e-~~-----a~G~rnp~Gl~~d~-~G~l~~tdn  202 (367)
T TIGR02604       172 DGGKLR-VV-----AHGFQNPYGHSVDS-WGDVFFCDN  202 (367)
T ss_pred             CCCeEE-EE-----ecCcCCCccceECC-CCCEEEEcc
Confidence            554432 22     12234467889998 777776544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.32  E-value=0.47  Score=38.79  Aligned_cols=152  Identities=14%  Similarity=0.125  Sum_probs=86.6

Q ss_pred             ceEEEEEeeCCCcEEEEee--CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEe-C
Q 016458          160 YVSCCQYVPDEDTHLITSS--GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD-T  236 (389)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d-~  236 (389)
                      .+...++++++..+.+...  ....+.++...  ......      .....+..-.|++ ++.+.+....+...+++. .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~------~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~   95 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPV------LTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDS   95 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceee------ccCCccccccccC-CCCEEEEEcCCCceEEEEec
Confidence            6788899999854444442  33445555433  332222      1223677788998 577776666666666663 2


Q ss_pred             CCCCcceeEEeee-c-cceEEEEEecCCCEEEEEe---cCCeEEEEECCCCce--eeEeec--cCCCCCCCCeeEEEeCC
Q 016458          237 RVASRAVRTFHGH-E-GDVNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQ--LQVYYQ--QHGENEIPHVTSIAFSI  307 (389)
Q Consensus       237 ~~~~~~~~~~~~~-~-~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~--~~~~~~~~~i~~~~~~~  307 (389)
                      ..+.......... . ..|..+.+||||..++...   .++.|.+--+.....  ...+..  .........++.+.|.+
T Consensus        96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~  175 (253)
T PF10647_consen   96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD  175 (253)
T ss_pred             CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence            2221222222211 1 2799999999999988766   356777765432111  111111  11111223589999999


Q ss_pred             CCCEEEEEecCCc
Q 016458          308 SGRLLFAGYSNGD  320 (389)
Q Consensus       308 ~~~~l~~~~~dg~  320 (389)
                      ++.+++.+...+.
T Consensus       176 ~~~L~V~~~~~~~  188 (253)
T PF10647_consen  176 DSTLVVLGRSAGG  188 (253)
T ss_pred             CCEEEEEeCCCCC
Confidence            9988777765543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.30  E-value=0.24  Score=45.51  Aligned_cols=128  Identities=15%  Similarity=0.170  Sum_probs=78.4

Q ss_pred             eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe-eCCCcEEEEEEC--CCCcEEEEecCCCcEEE
Q 016458           59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFS--PTGQSVACGGLDSVCSI  135 (389)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~dg~i~v  135 (389)
                      ...++..--...+-+.-+.-++.-++-+....+.|||...+.....-. ...+.|.++.|.  |+++.+++.|..+.|.+
T Consensus        21 ~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l  100 (631)
T PF12234_consen   21 LTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLL  100 (631)
T ss_pred             EEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence            333444444455556555555444444455689999998887555444 245779999984  58899999999999999


Q ss_pred             EeCCCCC--CCCCCCcceee--ecccc-cceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          136 FNLNSPT--DKDGNLPVSRM--LSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       136 w~~~~~~--~~~~~~~~~~~--~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                      |.-....  .....+.....  +..|+ .+|.+..|.++|  .++.|+ ++.+.|+|-.
T Consensus       101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G--~LvV~s-GNqlfv~dk~  156 (631)
T PF12234_consen  101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG--TLVVGS-GNQLFVFDKW  156 (631)
T ss_pred             EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC--eEEEEe-CCEEEEECCC
Confidence            8653211  01111112222  23343 679999999987  344443 3567887743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.28  E-value=0.21  Score=43.10  Aligned_cols=128  Identities=11%  Similarity=0.118  Sum_probs=79.3

Q ss_pred             CCceEEEeCCCCC--cceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEe
Q 016458          228 DSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF  305 (389)
Q Consensus       228 dg~i~i~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (389)
                      .|.+.-|-...+.  -++..-....++|.++.||+|.+.|++--.+..|.+++....+........+ ......|...+|
T Consensus        42 SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c-k~k~~~IlGF~W  120 (657)
T KOG2377|consen   42 SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC-KTKNANILGFCW  120 (657)
T ss_pred             cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh-ccCcceeEEEEE
Confidence            3445555544332  2233333456799999999999999999999999999975433333322222 222234888999


Q ss_pred             CCCCCEEEEEecCCcEEEEEcccceE-EEeecCcCCCCCCCeeEEEECCCCCeEEeee
Q 016458          306 SISGRLLFAGYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRITCLGLSADGSALCTGS  362 (389)
Q Consensus       306 ~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  362 (389)
                      +.+ .-+|..+..| +.+|-....+. ++..    +.|...|.-..|.++.+.+.-++
T Consensus       121 ~~s-~e~A~i~~~G-~e~y~v~pekrslRlV----ks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  121 TSS-TEIAFITDQG-IEFYQVLPEKRSLRLV----KSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             ecC-eeEEEEecCC-eEEEEEchhhhhhhhh----hhcccCccEEEEccccceEeeec
Confidence            866 4555554444 66776544322 2222    56777888888888876554443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.28  E-value=0.55  Score=39.21  Aligned_cols=237  Identities=13%  Similarity=0.093  Sum_probs=105.6

Q ss_pred             CCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceee-ecc-cccceEEEEEeeCCCcEEEEeeCCCeEEEE
Q 016458          109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM-LSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLW  186 (389)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  186 (389)
                      ..++..|.|.....-+++|. .+.  |+....+.   ..+..... ... ..-...++.|..  +..+++ +..+. .+.
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG---~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~iv-G~~g~-ll~   85 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGG---KTWQPVSLDLDNPFDYHLNSISFDG--NEGWIV-GEPGL-LLH   85 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEET-TTE--EEEESSTT---SS-EE-----S-----EEEEEEEET--TEEEEE-EETTE-EEE
T ss_pred             CCceEEEEEecCCEEEEEec-CCE--EEEECCCC---ccccccccCCCccceeeEEEEEecC--CceEEE-cCCce-EEE
Confidence            35789999986666666665 443  34333322   11111111 110 122356677754  244444 44453 333


Q ss_pred             eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeE-EeeeccceEEEEEecCCCEE
Q 016458          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVNTVKFFPDGNRF  265 (389)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l  265 (389)
                      ....+..-..+...  ...+.....+.... ++...++ +..|.  ||-.......-.. ...-.+.+..+.-+++|.++
T Consensus        86 T~DgG~tW~~v~l~--~~lpgs~~~i~~l~-~~~~~l~-~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~v  159 (302)
T PF14870_consen   86 TTDGGKTWERVPLS--SKLPGSPFGITALG-DGSAELA-GDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSSDGRYV  159 (302)
T ss_dssp             ESSTTSS-EE------TT-SS-EEEEEEEE-TTEEEEE-ETT----EEEESSTTSSEEEEE-S----EEEEEE-TTS-EE
T ss_pred             ecCCCCCcEEeecC--CCCCCCeeEEEEcC-CCcEEEE-cCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECCCCcEE
Confidence            33444443333110  12223334444443 3333333 44454  3443443333332 33445678888899999999


Q ss_pred             EEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE-cccceEEEeecCcCCCCCC
Q 016458          266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD-TLLAKVVLNLGSLQNSHEG  344 (389)
Q Consensus       266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~  344 (389)
                      +++.......-||--...-...-     ......|..|.|+|++...+++ ..|.|++=+ ....+....-........-
T Consensus       160 avs~~G~~~~s~~~G~~~w~~~~-----r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~  233 (302)
T PF14870_consen  160 AVSSRGNFYSSWDPGQTTWQPHN-----RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGY  233 (302)
T ss_dssp             EEETTSSEEEEE-TT-SS-EEEE-------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S
T ss_pred             EEECcccEEEEecCCCccceEEc-----cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCce
Confidence            88877666677874322111111     1122359999999998776655 788888877 2222222221000012334


Q ss_pred             CeeEEEECCCCCeEEeeeCCCeeE
Q 016458          345 RITCLGLSADGSALCTGSWDTNLK  368 (389)
Q Consensus       345 ~v~~~~~~~~~~~l~~~~~dg~i~  368 (389)
                      .+..++|.+++...++|+ .|.+.
T Consensus       234 ~~ld~a~~~~~~~wa~gg-~G~l~  256 (302)
T PF14870_consen  234 GILDLAYRPPNEIWAVGG-SGTLL  256 (302)
T ss_dssp             -EEEEEESSSS-EEEEES-TT-EE
T ss_pred             eeEEEEecCCCCEEEEeC-CccEE
Confidence            589999999887777655 44444

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.14  E-value=0.28  Score=43.03  Aligned_cols=134  Identities=16%  Similarity=0.187  Sum_probs=82.0

Q ss_pred             CCcEEE-EeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC--------CEEEEEecCCeEEEEECCCCc-eeeE
Q 016458          218 NSRMFV-SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG--------NRFGTGSDDGTCRLFDIRTGH-QLQV  287 (389)
Q Consensus       218 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~l~~~~~dg~i~i~d~~~~~-~~~~  287 (389)
                      +..+++ .|.....++-.|+..+ +.+..+..|...  -+.|.|..        +.|+ |-.+..|.-.|.+-.. .+..
T Consensus       478 dssli~~dg~~~~kLykmDIErG-kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERG-KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             CcceEEecCCCcccceeeecccc-eeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence            444443 4555667788888877 778888777654  46777742        3344 4455555555655432 2221


Q ss_pred             eeccCCCCCCCCeeEEEeC----CCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458          288 YYQQHGENEIPHVTSIAFS----ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  363 (389)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  363 (389)
                      ... ..     ..+.-.|+    ....|+|+++..|.|++||--.-.....+    .+....|..+..+.+|+++++.+.
T Consensus       554 ~es-Kd-----Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtal----P~lG~aIk~idvta~Gk~ilaTCk  623 (776)
T COG5167         554 VES-KD-----YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTAL----PGLGDAIKHIDVTANGKHILATCK  623 (776)
T ss_pred             eee-hh-----ccccccccccccccCceEEEecCCCceeeehhhcchhhhcC----cccccceeeeEeecCCcEEEEeec
Confidence            111 11     12222233    23459999999999999996443333333    567778999999999998887775


Q ss_pred             CC
Q 016458          364 DT  365 (389)
Q Consensus       364 dg  365 (389)
                      .-
T Consensus       624 ~y  625 (776)
T COG5167         624 NY  625 (776)
T ss_pred             ce
Confidence            43

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.12  E-value=0.59  Score=38.04  Aligned_cols=198  Identities=13%  Similarity=0.088  Sum_probs=113.0

Q ss_pred             cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC
Q 016458          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT  190 (389)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  190 (389)
                      -+..+.++  +++...+..+.-++|.|+.++..+.    ....+. ..+.-.++..+  | ++...+..|.-+.+.|+.+
T Consensus        88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~----~~~~ln-t~gyaygv~vs--G-n~aYVadlddgfLivdvsd  157 (370)
T COG5276          88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPT----LIGFLN-TDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSD  157 (370)
T ss_pred             hhheeEec--ccEEEEEcCCCceEEEeccCCCCcc----eecccc-CCceEEEEEec--C-CEEEEeeccCcEEEEECCC
Confidence            35556665  5667777777889999999865321    111111 12333343333  3 6777777666677888876


Q ss_pred             CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeecc-ceEEEEEecCCCEEEEEe
Q 016458          191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFPDGNRFGTGS  269 (389)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~  269 (389)
                      ..........  ......-..++.+   +++...+..|+-+.+.|+..+..+...-.-..+ .+.++..+++-.+++...
T Consensus       158 pssP~lagry--a~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~  232 (370)
T COG5276         158 PSSPQLAGRY--ALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD  232 (370)
T ss_pred             CCCceeeeee--ccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc
Confidence            5433222110  2233334566665   456777788999999999987655543333333 678888877765555543


Q ss_pred             cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458          270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (389)
Q Consensus       270 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (389)
                        --+.+-|....+....+-..... ....++.  +.-.+++.+....+.-+.+-|..+
T Consensus       233 --egvlivd~s~~ssp~~~gsyet~-~p~~~s~--v~Vs~~~~Yvadga~gl~~idisn  286 (370)
T COG5276         233 --EGVLIVDVSGPSSPTVFGSYETS-NPVSIST--VPVSGEYAYVADGAKGLPIIDISN  286 (370)
T ss_pred             --cceEEEecCCCCCceEeeccccC-Ccccccc--eecccceeeeeccccCceeEeccC
Confidence              35777787766654444332221 1112332  333456666666666666666654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.04  E-value=0.34  Score=42.53  Aligned_cols=141  Identities=16%  Similarity=0.198  Sum_probs=87.4

Q ss_pred             EEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC------CcEEEEeeCCCceEEEeCCCCCcceeEE
Q 016458          173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN------SRMFVSGSCDSTARLWDTRVASRAVRTF  246 (389)
Q Consensus       173 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~  246 (389)
                      ++..|+....++-.|++.|+.+...     ..+.. + -+.+.|..      ...-++|-.+..|.-.|.|..+..+...
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW-----~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEW-----DLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEe-----ecCCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            3445666778888999999998888     34443 3 45666521      1123456667777777887654333222


Q ss_pred             eeeccceEEEEEec----CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEE
Q 016458          247 HGHEGDVNTVKFFP----DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY  322 (389)
Q Consensus       247 ~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  322 (389)
                      . ....++.-.|+.    ...++++++..|.|++||-- +....+..+..+.    .|..+..+.+|+++++.+.. .+.
T Consensus       555 e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~----aIk~idvta~Gk~ilaTCk~-yll  627 (776)
T COG5167         555 E-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGD----AIKHIDVTANGKHILATCKN-YLL  627 (776)
T ss_pred             e-ehhccccccccccccccCceEEEecCCCceeeehhh-cchhhhcCccccc----ceeeeEeecCCcEEEEeecc-eEE
Confidence            1 112222222222    44589999999999999943 3333333332222    48889999999998887765 677


Q ss_pred             EEEcc
Q 016458          323 VWDTL  327 (389)
Q Consensus       323 i~d~~  327 (389)
                      +-|+.
T Consensus       628 L~d~~  632 (776)
T COG5167         628 LTDVP  632 (776)
T ss_pred             EEecc
Confidence            77753

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.02  E-value=0.96  Score=39.69  Aligned_cols=268  Identities=11%  Similarity=0.039  Sum_probs=141.5

Q ss_pred             CCeEEEEecCCcEEEEeCCCCCe-----eEEEeeCCCcEEEEEECC-----CCcEEEEecCCCcEEEEeCCCCCC--CCC
Q 016458           79 RNRIVSASQDGRLIVWNALTSQK-----THAIKLPCAWVMTCAFSP-----TGQSVACGGLDSVCSIFNLNSPTD--KDG  146 (389)
Q Consensus        79 ~~~l~~~~~dg~v~iw~~~~~~~-----~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~vw~~~~~~~--~~~  146 (389)
                      ...+++|+..|.++||+......     +... .-..+|..+..-.     +...||+ -.-..+.||.+.....  ..+
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence            35899999999999999754431     1111 2235677776532     2234444 4567788888843221  111


Q ss_pred             CCcceeeeccccc--ceEEEEEeeCC----CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458          147 NLPVSRMLSGHKG--YVSCCQYVPDE----DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (389)
Q Consensus       147 ~~~~~~~~~~~~~--~v~~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (389)
                      ..........|.-  ....+++-|-|    ..+++.-+.||.+.+|+-+.-.....++.      .--...+.+.+ ..+
T Consensus       115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~------~llPgPl~Y~~-~tD  187 (418)
T PF14727_consen  115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD------FLLPGPLCYCP-RTD  187 (418)
T ss_pred             cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC------CCCCcCeEEee-cCC
Confidence            1222233333432  23333443322    36788899999999999777655555422      22233456666 667


Q ss_pred             EEEEeeCCCceEEEeCCCC--------------------CcceeEEe-eeccceEE---EEEecCCCEEEEEecCCeEEE
Q 016458          221 MFVSGSCDSTARLWDTRVA--------------------SRAVRTFH-GHEGDVNT---VKFFPDGNRFGTGSDDGTCRL  276 (389)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~--------------------~~~~~~~~-~~~~~i~~---~~~~~~~~~l~~~~~dg~i~i  276 (389)
                      .|++++.+..+.-|....-                    ++....+. .-...+..   +.++.....+++-+. ..+.+
T Consensus       188 sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLge-r~Lf~  266 (418)
T PF14727_consen  188 SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGE-RSLFC  266 (418)
T ss_pred             EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEec-ceEEE
Confidence            8888888888888864211                    00000110 01122333   333323333444433 35555


Q ss_pred             EECCCCceeeEeeccCCCCCCCCeeEEEeC------CC-CCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEE
Q 016458          277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFS------IS-GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  349 (389)
Q Consensus       277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  349 (389)
                      .+. +|............     .....|.      ++ +..+++++.++.+.||.  ..+..+...    ....+| ++
T Consensus       267 l~~-~G~l~~~krLd~~p-----~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~----l~~~PV-al  333 (418)
T PF14727_consen  267 LKD-NGSLRFQKRLDYNP-----SCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQ----LPHVPV-AL  333 (418)
T ss_pred             EcC-CCeEEEEEecCCce-----eeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecC----CCCCCE-EE
Confidence            554 34333333222111     1112121      22 12588899999999996  445555442    222233 33


Q ss_pred             EE---CCCCCeEEeeeCCCeeEE
Q 016458          350 GL---SADGSALCTGSWDTNLKV  369 (389)
Q Consensus       350 ~~---~~~~~~l~~~~~dg~i~i  369 (389)
                      ..   ..-...|++-+.+|.+.+
T Consensus       334 ~v~~~~~~~G~IV~Ls~~G~L~v  356 (418)
T PF14727_consen  334 SVANFNGLKGLIVSLSDEGQLSV  356 (418)
T ss_pred             EecccCCCCceEEEEcCCCcEEE
Confidence            33   233457888899999988

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.00  E-value=0.93  Score=39.40  Aligned_cols=199  Identities=14%  Similarity=0.122  Sum_probs=91.2

Q ss_pred             cEEEEee-CCCeEEEEeCCCC----eeEEEecCc-cc-CCCCCCeeEEEeeCCCCcEEEEee------CCCceEEEeCCC
Q 016458          172 THLITSS-GDQTCVLWDITTG----LRTSVFGGE-FQ-SGHTADVLSVSISGSNSRMFVSGS------CDSTARLWDTRV  238 (389)
Q Consensus       172 ~~l~~~~-~dg~i~iwd~~~~----~~~~~~~~~-~~-~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~  238 (389)
                      ++|+..+ .++.|+|+|+.+.    +....+... .. +..-.....+..-| ++++++++-      .-|.+.++|-++
T Consensus        88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            4555554 7899999998843    444444221 00 01112233444455 677777643      234677888775


Q ss_pred             CCcceeEEeeecc---ceEEEEEecCCCEEEEEec--------------------CCeEEEEECCCCceeeEeeccCCCC
Q 016458          239 ASRAVRTFHGHEG---DVNTVKFFPDGNRFGTGSD--------------------DGTCRLFDIRTGHQLQVYYQQHGEN  295 (389)
Q Consensus       239 ~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~--------------------dg~i~i~d~~~~~~~~~~~~~~~~~  295 (389)
                      . ...........   .-..+-|.|..+.+++...                    ..++.+||+.+.+.++++...... 
T Consensus       167 f-~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g-  244 (461)
T PF05694_consen  167 F-EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG-  244 (461)
T ss_dssp             ---EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE-
T ss_pred             c-cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC-
Confidence            5 44444443222   2456778887777777643                    357999999999999888764321 


Q ss_pred             CCCCeeEEEe--CCCCCEEEEEe-cCCcEEEEEc-ccce----EEEeecCcC-------------CCCCCCeeEEEECCC
Q 016458          296 EIPHVTSIAF--SISGRLLFAGY-SNGDCYVWDT-LLAK----VVLNLGSLQ-------------NSHEGRITCLGLSAD  354 (389)
Q Consensus       296 ~~~~i~~~~~--~~~~~~l~~~~-~dg~i~i~d~-~~~~----~~~~~~~~~-------------~~~~~~v~~~~~~~~  354 (389)
                        .....+.|  .|+..+=++|+ ..++|..|-- ..++    .+..+....             ..-..-|+.|..|.|
T Consensus       245 --~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD  322 (461)
T PF05694_consen  245 --QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD  322 (461)
T ss_dssp             --EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred             --CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence              11344444  45555544443 2334444432 3322    222221100             011345899999999


Q ss_pred             CCeEEeeeC-CCeeEEeecceecccC
Q 016458          355 GSALCTGSW-DTNLKVNLGFWRVQEG  379 (389)
Q Consensus       355 ~~~l~~~~~-dg~i~i~~~~W~~~~~  379 (389)
                      .++|...+. +|.++.    ||+...
T Consensus       323 DrfLYvs~W~~Gdvrq----YDISDP  344 (461)
T PF05694_consen  323 DRFLYVSNWLHGDVRQ----YDISDP  344 (461)
T ss_dssp             S-EEEEEETTTTEEEE----EE-SST
T ss_pred             CCEEEEEcccCCcEEE----EecCCC
Confidence            999987775 899999    999874

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.98  E-value=0.72  Score=37.88  Aligned_cols=234  Identities=14%  Similarity=0.180  Sum_probs=128.4

Q ss_pred             cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecc-----cccceEEEEEeeCC-----------CcEE
Q 016458          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-----HKGYVSCCQYVPDE-----------DTHL  174 (389)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~-----------~~~l  174 (389)
                      ....|+++|.+.+-++....+...+||...........++...+..     .....+.+.|+...           ...+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            3577999999988888888899999999732211111122333221     12456777776432           2346


Q ss_pred             EEeeCCCeEEEEeCCCCee-----EEEecCcccCCCCCCe-eEEEee--CCCCcEEEEeeCCCceEEEeCCCCCcce-eE
Q 016458          175 ITSSGDQTCVLWDITTGLR-----TSVFGGEFQSGHTADV-LSVSIS--GSNSRMFVSGSCDSTARLWDTRVASRAV-RT  245 (389)
Q Consensus       175 ~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v-~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~  245 (389)
                      +.+++||+|.-|...-...     ...+.    ......| ..+++.  .....+.++--..++|.+||-.-....+ ..
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d----~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~  179 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVD----ASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGS  179 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEc----cCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCC
Confidence            7889999999998643322     11111    1111222 334443  3233444555568899999865331110 00


Q ss_pred             Eee-----eccc-----------eEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC--
Q 016458          246 FHG-----HEGD-----------VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI--  307 (389)
Q Consensus       246 ~~~-----~~~~-----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--  307 (389)
                      +..     --.+           |+-..-.++.+.=+.|..-|.|-+||+. ++.++.+......   .....|+..|  
T Consensus       180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~L---NaPWG~a~APa~  255 (336)
T TIGR03118       180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRL---NAPWGLAIAPES  255 (336)
T ss_pred             ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcc---cCCceeeeChhh
Confidence            100     0000           1111112222223334455789999976 6677666432221   1245666654  


Q ss_pred             ----CCCEEEEEecCCcEEEEEcccceEEEeecCcCCCC---CCCeeEEEECC
Q 016458          308 ----SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH---EGRITCLGLSA  353 (389)
Q Consensus       308 ----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~v~~~~~~~  353 (389)
                          .|.+|+---.||+|..||..+++.+-.+... .++   ...+..|+|..
T Consensus       256 FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~-~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       256 FGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP-DNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             hCCCCCCeEEeecCCceeEEecCCCCceeeeecCC-CCCeEEecCeEEeeeCC
Confidence                4667777777999999999999888777421 111   12456777765

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.93  E-value=0.62  Score=43.45  Aligned_cols=108  Identities=17%  Similarity=0.177  Sum_probs=71.0

Q ss_pred             CcEEEEeeCCCeEEEEeCCC-------C----e---eEEEecCcccCCCCCCeeEEEee--CCCCcEEEEeeCCCceEEE
Q 016458          171 DTHLITSSGDQTCVLWDITT-------G----L---RTSVFGGEFQSGHTADVLSVSIS--GSNSRMFVSGSCDSTARLW  234 (389)
Q Consensus       171 ~~~l~~~~~dg~i~iwd~~~-------~----~---~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~i~  234 (389)
                      ...|+.+..||.|.+|.+++       .    .   ......+.+.......+.+++++  . ..+++|+++....|.+|
T Consensus       114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEEEEecCCceEEEE
Confidence            46788999999999996532       0    0   00011111223345578899988  6 77889999888888888


Q ss_pred             eCCCCC--cceeEEeeeccceEEEEEecCC---C---EEEEEecCCeEEEEEC
Q 016458          235 DTRVAS--RAVRTFHGHEGDVNTVKFFPDG---N---RFGTGSDDGTCRLFDI  279 (389)
Q Consensus       235 d~~~~~--~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~i~d~  279 (389)
                      -.....  .....-..+...|.+|+|-++.   .   .+++++-.|.+.+|++
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            655421  1111112356679999998743   2   7888899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.88  E-value=0.43  Score=44.39  Aligned_cols=118  Identities=12%  Similarity=0.093  Sum_probs=72.7

Q ss_pred             eEEEEEec--CCCEEEEEecCCeEEEEECCC-------C----ce---eeEeeccCCCCCCCCeeEEEeC--CCCCEEEE
Q 016458          253 VNTVKFFP--DGNRFGTGSDDGTCRLFDIRT-------G----HQ---LQVYYQQHGENEIPHVTSIAFS--ISGRLLFA  314 (389)
Q Consensus       253 i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~-------~----~~---~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~  314 (389)
                      |+.+....  +...|+.+..||.|.+|.+.+       .    ..   .................++++.  ...++||+
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV  182 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV  182 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence            44444333  556899999999999997632       0    00   0000000111122247889988  77889999


Q ss_pred             EecCCcEEEEEcccce-EEEeecCcCCCCCCCeeEEEECCCC---C---eEEeeeCCCeeEEeecceec
Q 016458          315 GYSNGDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSADG---S---ALCTGSWDTNLKVNLGFWRV  376 (389)
Q Consensus       315 ~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~i~~~~W~~  376 (389)
                      ++....|.||-..... .......  ..+...|-+|+|-++.   .   .|++++-.|.+.+    |++
T Consensus       183 SsNs~~VTVFaf~l~~~r~~~~~s--~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~----~~I  245 (717)
T PF08728_consen  183 SSNSQEVTVFAFALVDERFYHVPS--HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT----FKI  245 (717)
T ss_pred             ecCCceEEEEEEeccccccccccc--cccccCCCeeEeecCCCCCccceEEEEEeccCcEEE----EEE
Confidence            9888888888665421 1111111  2466679999997643   2   7888889999998    666

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.68  E-value=0.083  Score=28.90  Aligned_cols=31  Identities=19%  Similarity=0.355  Sum_probs=26.0

Q ss_pred             CcEEEEEEcCCC---CeEEEEecCCcEEEEeCCC
Q 016458           68 GKVYSLDWTSER---NRIVSASQDGRLIVWNALT   98 (389)
Q Consensus        68 ~~v~~~~~~~~~---~~l~~~~~dg~v~iw~~~~   98 (389)
                      ++|.++.|+|+.   .+|+.+-..|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            578999999844   4888888889999999985

It contains a characteristic DLL sequence motif.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.67  E-value=1.3  Score=38.51  Aligned_cols=120  Identities=11%  Similarity=0.204  Sum_probs=79.8

Q ss_pred             cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee----EEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT----HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS  140 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~  140 (389)
                      ...++|.++.||+|.+.||+--.+++|.+++....+..    ...+.....|....|+.+ .-+|.....| +-+|....
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p  141 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP  141 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence            35679999999999999999999999999998443322    223344566888999876 4455554444 67777665


Q ss_pred             CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee-CCCeEEEEeCCCCe
Q 016458          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTGL  192 (389)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~  192 (389)
                      ..      ...+..+.|+..|.--.|.++..-.+++.+ ...++.=+.+.++.
T Consensus       142 ek------rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~  188 (657)
T KOG2377|consen  142 EK------RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT  188 (657)
T ss_pred             hh------hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence            22      134556678888888899998643344444 34444445554443

>PRK13684 Ycf48-like protein; Provisional

Probab=95.67  E-value=1.2  Score=38.15  Aligned_cols=277  Identities=10%  Similarity=0.011  Sum_probs=130.9

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC-CCeeEEEe----eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCC
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALT-SQKTHAIK----LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP  141 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  141 (389)
                      ...+.+|+|..+.+-+++|. +|.|  |...+ |+.-....    .....+.++.|.++ ..+++ +..|.  +|....+
T Consensus        45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~--i~~S~Dg  117 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSL--LLHTTDG  117 (334)
T ss_pred             CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCce--EEEECCC
Confidence            55799999986666666664 4543  33322 22211111    12234677888654 33444 34444  3333322


Q ss_pred             CCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcE
Q 016458          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM  221 (389)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  221 (389)
                      .   ..+..........+....+.....+ . +..++..|.|..=+ ..++.-..+.    ......+..+.+.| ++.+
T Consensus       118 G---~tW~~~~~~~~~~~~~~~i~~~~~~-~-~~~~g~~G~i~~S~-DgG~tW~~~~----~~~~g~~~~i~~~~-~g~~  186 (334)
T PRK13684        118 G---KNWTRIPLSEKLPGSPYLITALGPG-T-AEMATNVGAIYRTT-DGGKNWEALV----EDAAGVVRNLRRSP-DGKY  186 (334)
T ss_pred             C---CCCeEccCCcCCCCCceEEEEECCC-c-ceeeeccceEEEEC-CCCCCceeCc----CCCcceEEEEEECC-CCeE
Confidence            1   1111111000011111222222222 2 33344445443222 2233222221    23345688888887 6655


Q ss_pred             EEEeeCCCceEEEeCCCCCcceeEE-eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe
Q 016458          222 FVSGSCDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV  300 (389)
Q Consensus       222 l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i  300 (389)
                      ++++ ..|.+..- .+...+..... ..-...++++.+.+++..++++ ..|.+.+=....+..-.....+. ......+
T Consensus       187 v~~g-~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~-~~~~~~l  262 (334)
T PRK13684        187 VAVS-SRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPE-ITNGYGY  262 (334)
T ss_pred             EEEe-CCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCc-cccccce
Confidence            5544 45654432 11221222222 2234578899999998876665 55766532334433322221110 1112247


Q ss_pred             eEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      ..+.+.+++..+++| .+|.+. .....++........ ..-....+.+.|..+++.++ .+..|.|.-
T Consensus       263 ~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~-~~~~~~~~~~~~~~~~~~~~-~G~~G~il~  327 (334)
T PRK13684        263 LDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVG-EEVPSNFYKIVFLDPEKGFV-LGQRGVLLR  327 (334)
T ss_pred             eeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcC-CCCCcceEEEEEeCCCceEE-ECCCceEEE
Confidence            889999988766555 566554 444445544433110 11224577888876666554 566787766

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.62  E-value=0.08  Score=28.97  Aligned_cols=33  Identities=15%  Similarity=0.166  Sum_probs=27.9

Q ss_pred             CCeeEEEeeCCCC--cEEEEeeCCCceEEEeCCCC
Q 016458          207 ADVLSVSISGSNS--RMFVSGSCDSTARLWDTRVA  239 (389)
Q Consensus       207 ~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~  239 (389)
                      +.+.++.|+|...  ++|+.+-..|.|.++|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            3588999998666  79999999999999999953

It contains a characteristic DLL sequence motif.

>PRK10115 protease 2; Provisional

Probab=95.61  E-value=2.2  Score=40.70  Aligned_cols=197  Identities=13%  Similarity=0.025  Sum_probs=95.6

Q ss_pred             cEEEEEECCCCcEEEEecC-----CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC-----
Q 016458          111 WVMTCAFSPTGQSVACGGL-----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----  180 (389)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----  180 (389)
                      .+..+.++|++++|+.+..     ...|++.|+.++..      +...+..-   -..++|.++++.++++...+     
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~------l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~  198 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW------YPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLP  198 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC------CCccccCc---ceEEEEeeCCCEEEEEEecCCCCCC
Confidence            3667889999998887633     23588888876431      11111111   14589999986666665432     


Q ss_pred             CeEEEEeCCCC--eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC---CCceEEEeCCCCCcceeEEeeeccceEE
Q 016458          181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---DSTARLWDTRVASRAVRTFHGHEGDVNT  255 (389)
Q Consensus       181 g~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~i~~  255 (389)
                      ..|..+++.++  +....+     ........-..+.+.++.+++..+.   ++.+.+++..........+..+...+..
T Consensus       199 ~~v~~h~lgt~~~~d~lv~-----~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  273 (686)
T PRK10115        199 YQVWRHTIGTPASQDELVY-----EEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY  273 (686)
T ss_pred             CEEEEEECCCChhHCeEEE-----eeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE
Confidence            46888898887  333344     2222222222233325555444332   4578888854321112222223322221


Q ss_pred             EEEecCCCEEEEEec----CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458          256 VKFFPDGNRFGTGSD----DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       256 ~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (389)
                      -..+.. ..|...+.    ...|...++........+....   ....+..+.+. .+.++++...+|.-+++-+
T Consensus       274 ~~~~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~---~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~  343 (686)
T PRK10115        274 SLDHYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPR---ENIMLEGFTLF-TDWLVVEERQRGLTSLRQI  343 (686)
T ss_pred             EEEeCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCC---CCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence            111222 33333332    2234444544211122222221   11237777776 3345555666665444433

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=95.57  E-value=0.34  Score=44.65  Aligned_cols=72  Identities=14%  Similarity=0.189  Sum_probs=45.6

Q ss_pred             ccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS  140 (389)
Q Consensus        66 h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~  140 (389)
                      ....++++.-+|.+.-++.+..||+|++|++...+...... ...+-..+.|...|  |+++..|..+--|.-+.
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~dg   84 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKEDG   84 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeeccC
Confidence            34457888999999999999999999999986554422111 11223344454333  45555666666665443

>TIGR01063 gyrA DNA gyrase, A subunit

Probab=95.49  E-value=2.6  Score=40.81  Aligned_cols=250  Identities=10%  Similarity=0.008  Sum_probs=121.3

Q ss_pred             EEEcCCCCeEEEEecCCcEEEEeCCCCCe-------eEEEee-CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCC-
Q 016458           73 LDWTSERNRIVSASQDGRLIVWNALTSQK-------THAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD-  143 (389)
Q Consensus        73 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~-  143 (389)
                      -++-++...+++-+.+|.|+--+..+-..       ...+.. ....+..+........++..+..|.+.......-.. 
T Consensus       490 edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~  569 (800)
T TIGR01063       490 EDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEA  569 (800)
T ss_pred             hhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCC
Confidence            34456667888889999998776543211       111111 123455554555666666667778766654432110 


Q ss_pred             --CCCCCcc--eeeecccccceEEEEEee-CCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc-ccCCCCCCeeEEEeeCC
Q 016458          144 --KDGNLPV--SRMLSGHKGYVSCCQYVP-DEDTHLITSSGDQTCVLWDITTGLRTSVFGGE-FQSGHTADVLSVSISGS  217 (389)
Q Consensus       144 --~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~  217 (389)
                        ...-.+.  ...+.....-+.++.... +.+..++..+.+|.++-.++..-......... ......+.+..+.... 
T Consensus       570 ~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~~-  648 (800)
T TIGR01063       570 SRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLTS-  648 (800)
T ss_pred             CcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEeC-
Confidence              0000011  011222223344444322 12357899999999998877543221111000 0011234454444444 


Q ss_pred             CCcEEEEeeCCCceEEEeCCCCC--------cceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCC-------
Q 016458          218 NSRMFVSGSCDSTARLWDTRVAS--------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG-------  282 (389)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------  282 (389)
                      ....++..+..|.+..+....-.        .....+. ....|.++..-.++..++..+..|.++...+..-       
T Consensus       649 ~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~  727 (800)
T TIGR01063       649 GDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG  727 (800)
T ss_pred             CCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC
Confidence            33446666667877666553221        1111121 1233444444445557888888898888765432       


Q ss_pred             ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      +....+.....   ...+..+....+...++..+.+|.+..++..
T Consensus       728 kGv~~ikl~~~---~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~  769 (800)
T TIGR01063       728 KGVKSIKITDR---NGQVVGAIAVDDDDELMLITSAGKLIRTSVQ  769 (800)
T ss_pred             cceEEEEccCC---CCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence            12222211110   0123333333344456666777877777654

This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.25  E-value=0.014  Score=54.18  Aligned_cols=140  Identities=19%  Similarity=0.190  Sum_probs=74.9

Q ss_pred             CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC--CeeEEEecCcccCCCCC
Q 016458          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT--GLRTSVFGGEFQSGHTA  207 (389)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~  207 (389)
                      .+.+++-+....-      ......++..+.+-.+.|-...-..+.  -.-|.+.+||+.-  |+....+..........
T Consensus       110 ~~~vrvaN~~~sm------~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs  181 (1283)
T KOG1916|consen  110 ENGVRVANQEPSM------RHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGS  181 (1283)
T ss_pred             hhhhhhccCcchh------HHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCC
Confidence            4556666655411      112345667788888888543222222  3347788888753  33222221111133334


Q ss_pred             CeeEEEeeCC--CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEE-----------EecCCCEEEEEecCCeE
Q 016458          208 DVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK-----------FFPDGNRFGTGSDDGTC  274 (389)
Q Consensus       208 ~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~l~~~~~dg~i  274 (389)
                      .+.-+.|.|-  +.-++..+..++.+++........  ..+..|...+..++           .+|||..++.++.||.+
T Consensus       182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v  259 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV  259 (1283)
T ss_pred             CcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence            4455666552  345666677788888887764422  33344665555443           45666666666666666


Q ss_pred             EEEEC
Q 016458          275 RLFDI  279 (389)
Q Consensus       275 ~i~d~  279 (389)
                      ++|.+
T Consensus       260 ~f~Qi  264 (1283)
T KOG1916|consen  260 GFYQI  264 (1283)
T ss_pred             ceeee
Confidence            66543

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=95.15  E-value=1.7  Score=36.65  Aligned_cols=241  Identities=10%  Similarity=0.037  Sum_probs=112.5

Q ss_pred             CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE------
Q 016458          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT------  194 (389)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------  194 (389)
                      +++|+.|+.+|...+ ++....     ....+  -.+...|+++...+..+-+++.++....++.+++..-...      
T Consensus        13 ~~~lL~GTe~Gly~~-~~~~~~-----~~~~k--l~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~   84 (302)
T smart00036       13 GKWLLVGTEEGLYVL-NISDQP-----GTLEK--LIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGS   84 (302)
T ss_pred             CcEEEEEeCCceEEE-EcccCC-----CCeEE--ecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCC
Confidence            368999999985544 454311     01222  2345689999999876555555666667999998433210      


Q ss_pred             -----EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-------eeccceEEEEEecC-
Q 016458          195 -----SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-------GHEGDVNTVKFFPD-  261 (389)
Q Consensus       195 -----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~-  261 (389)
                           .... .....+........+.......++++....+|.++...........+.       ....++..+..+++ 
T Consensus        85 ~~~~~~~~~-~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~  163 (302)
T smart00036       85 ARLVIRKNV-LTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSF  163 (302)
T ss_pred             ccccccccc-eEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccc
Confidence                 0000 000233333444444432233445555667777775443211111111       11123333333332 


Q ss_pred             -CCEEEEEecCCeEEEEECCC--CceeeEeeccCCCCCC-CCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC
Q 016458          262 -GNRFGTGSDDGTCRLFDIRT--GHQLQVYYQQHGENEI-PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS  337 (389)
Q Consensus       262 -~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  337 (389)
                       ...++.|+..+...++++..  ................ .++....+ +++.+|++- .+ ...+.|....+...... 
T Consensus       164 ~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc~-~~-~~v~Vn~~G~~~~r~~~-  239 (302)
T smart00036      164 ERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLCY-DE-FGVFVNLYGKRRSRNPI-  239 (302)
T ss_pred             cceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEEE-Cc-EEEEEeCCCCccccceE-
Confidence             45677777653344455432  1100000000000000 23333334 344444443 33 34555544211111100 


Q ss_pred             cCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          338 LQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       338 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                        -.-...+.++++..  .+|+.-+ +..|.|    |++.++++..
T Consensus       240 --l~w~~~p~~~~~~~--pyll~~~-~~~iev----r~l~~~~l~q  276 (302)
T smart00036      240 --LHWEFMPESFAYHS--PYLLAFH-DNGIEI----RSIKTGELLQ  276 (302)
T ss_pred             --EEcCCcccEEEEEC--CEEEEEc-CCcEEE----EECCCCceEE
Confidence              12234566777763  4666655 455999    9999987643

Unpublished observations.

>PRK05560 DNA gyrase subunit A; Validated

Probab=95.08  E-value=3.6  Score=40.00  Aligned_cols=264  Identities=8%  Similarity=-0.021  Sum_probs=128.3

Q ss_pred             EEcCCCCeEEEEecCCcEEEEeCCCCCe-------eEEEee-CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC---CC
Q 016458           74 DWTSERNRIVSASQDGRLIVWNALTSQK-------THAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS---PT  142 (389)
Q Consensus        74 ~~~~~~~~l~~~~~dg~v~iw~~~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~---~~  142 (389)
                      .+-++...+++-+.+|.|+--...+...       ...+.. ....+..+........|+..+..|.+.......   ..
T Consensus       493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~  572 (805)
T PRK05560        493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEAS  572 (805)
T ss_pred             hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCC
Confidence            4455677888899999988775543211       111111 123444444455566666667778766654432   11


Q ss_pred             CCCCCCcc--eeeecccccceEEEEEeeC-CCcEEEEeeCCCeEEEEeCCCCe-------eEEEecCcccCCCCCCeeEE
Q 016458          143 DKDGNLPV--SRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGL-------RTSVFGGEFQSGHTADVLSV  212 (389)
Q Consensus       143 ~~~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~v~~~  212 (389)
                      ....-.+.  ...+.....-+.++.+... ....++..+.+|.++--++..-.       ....+     . ..+.+..+
T Consensus       573 ~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikL-----k-e~D~lv~v  646 (805)
T PRK05560        573 RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINL-----D-EGDELIGV  646 (805)
T ss_pred             cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeecc-----C-CCCEEEEE
Confidence            00000111  0112222333444444421 23578999999999987764322       11111     1 23445444


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEeCCCCC--------cceeEEeeeccceEE-EEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458          213 SISGSNSRMFVSGSCDSTARLWDTRVAS--------RAVRTFHGHEGDVNT-VKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (389)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (389)
                      .... ....++..+..|.+..+....-.        .....+.. ...|.. +.+.+++.+++..+..|.++...+..-.
T Consensus       647 ~~~~-~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~  724 (805)
T PRK05560        647 RLTD-GDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYR  724 (805)
T ss_pred             EEeC-CCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhh
Confidence            4444 34456666677877776654221        11122221 223333 3344444478888888988887654321


Q ss_pred             -------eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458          284 -------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (389)
Q Consensus       284 -------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (389)
                             ....+....   ....+..+........++..+.+|.+..++...-.   ..    ......|..+....++
T Consensus       725 ~~~R~~kG~~~lkl~~---~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~---~~----gR~a~GVk~I~L~~~D  793 (805)
T PRK05560        725 LQGRGGKGVITIKITE---KNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEIS---IT----GRNTQGVRLIRLDEGD  793 (805)
T ss_pred             ccCCCCCcEEeeeccC---CCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCC---cc----ccCCCCeeeEecCCCC
Confidence                   112221100   01123333322333456666677877777754321   11    2233456666665443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.02  E-value=2.2  Score=37.99  Aligned_cols=111  Identities=15%  Similarity=0.106  Sum_probs=61.4

Q ss_pred             cceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeE--eeccCCCCCCCCeeEEEeCCCC------CEEEEEe------
Q 016458          251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV--YYQQHGENEIPHVTSIAFSISG------RLLFAGY------  316 (389)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~------~~l~~~~------  316 (389)
                      ...+.++|.|++++|++--..|.|++++..++.....  +..............|+++|+-      .+|++..      
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~  109 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD  109 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence            4568899999998777665579999998655432211  1111001113458999999874      3555543      


Q ss_pred             ----cCCcEEEEEcccc-------eEEEe-ecCcCCCCCCCeeEEEECCCCCeEEeeeCC
Q 016458          317 ----SNGDCYVWDTLLA-------KVVLN-LGSLQNSHEGRITCLGLSADGSALCTGSWD  364 (389)
Q Consensus       317 ----~dg~i~i~d~~~~-------~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  364 (389)
                          ....|.-|.+...       +.+.. +.. ...|.  -..|+|.|||.+.++.++.
T Consensus       110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~-~~~H~--GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPA-GNDHN--GGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCccCCcEEEEEEecCCCCccccceEEEecCCC-CCCcC--CceEEECCCCcEEEEECCC
Confidence                1223444544311       11111 110 11233  4567899999877766654

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK10115 protease 2; Provisional

Probab=94.97  E-value=3.5  Score=39.35  Aligned_cols=242  Identities=9%  Similarity=-0.000  Sum_probs=117.4

Q ss_pred             cEEEEEEcCCCCeEEEEec-----CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC------CcEEEEe
Q 016458           69 KVYSLDWTSERNRIVSASQ-----DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD------SVCSIFN  137 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~-----dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vw~  137 (389)
                      .+..+.|+||+++|+.+..     ...|++-|+.++..+...-...  -..++|.++++.|+....+      ..|..++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4778899999998886533     2368888998886432221111  1458999999877665432      3577777


Q ss_pred             CCCCCCCCCCCcceeeecccccceEEEEEee-CCCcEEEEee--CCCeEEEEeCC--CCeeEEEecCcccCCCCCCeeEE
Q 016458          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP-DEDTHLITSS--GDQTCVLWDIT--TGLRTSVFGGEFQSGHTADVLSV  212 (389)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~--~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~  212 (389)
                      +.++...     ....+...........+.+ ++..+++...  .++.+.+++..  .+.....+.     ........+
T Consensus       206 lgt~~~~-----d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~  275 (686)
T PRK10115        206 IGTPASQ-----DELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP-----RRKDHEYSL  275 (686)
T ss_pred             CCCChhH-----CeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE-----CCCCCEEEE
Confidence            7765211     1122222222222222333 5533333322  24578888843  333222221     111222222


Q ss_pred             EeeCCCCcEEEEeeCC-C--ceEEEeCCCCCcceeEEeee-c-cceEEEEEecCCCEEEEEecCCeEEEEECCC-Cceee
Q 016458          213 SISGSNSRMFVSGSCD-S--TARLWDTRVASRAVRTFHGH-E-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQ  286 (389)
Q Consensus       213 ~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~-~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~  286 (389)
                      . +. .+.+++....+ .  .|...++... .....+..+ . ..+..+.+. .+.++++...+|.-+++-+.. +....
T Consensus       276 ~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~  351 (686)
T PRK10115        276 D-HY-QHRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVI  351 (686)
T ss_pred             E-eC-CCEEEEEEcCCCCCceEEEecCCCc-ccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceE
Confidence            2 32 33333333222 2  3444444422 223344445 2 367778877 334556666677655544432 22233


Q ss_pred             EeeccCCCCCCCCeeEEEeC--CCCC-EEEEEe---cCCcEEEEEcccce
Q 016458          287 VYYQQHGENEIPHVTSIAFS--ISGR-LLFAGY---SNGDCYVWDTLLAK  330 (389)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~--~~~~-~l~~~~---~dg~i~i~d~~~~~  330 (389)
                      .+.... .   ..+..+.++  +++. ++++.+   .-+.++.+|+.+++
T Consensus       352 ~l~~~~-~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        352 GIAFDD-P---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             EecCCC-C---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            322111 0   012333344  4444 443332   24578888987754

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.95  E-value=0.015  Score=53.88  Aligned_cols=120  Identities=13%  Similarity=0.110  Sum_probs=62.8

Q ss_pred             eCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEee---CCCcEEEEeeCCCe
Q 016458          107 LPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP---DEDTHLITSSGDQT  182 (389)
Q Consensus       107 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~  182 (389)
                      +..+.|-.+.|-. +...++  -.-|...||+++.-...-...............+.-+.|.|   .. .++..+-.++.
T Consensus       130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~-~~ic~~~~~~~  206 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNK-VYICYGLKGGE  206 (1283)
T ss_pred             cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccccc-ceeeeccCCCc
Confidence            3345566666632 111111  23367889998762211111112222223333444455554   33 56777788899


Q ss_pred             EEEEeCCCCeeEEEecCcccCCCCCCeeEEEe-----------eCCCCcEEEEeeCCCceEEEeC
Q 016458          183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSI-----------SGSNSRMFVSGSCDSTARLWDT  236 (389)
Q Consensus       183 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-----------~~~~~~~l~~~~~dg~i~i~d~  236 (389)
                      +++.++.+... ..+     ..|...+..+++           +| ++..++.+..||.++.|.+
T Consensus       207 i~lL~~~ra~~-~l~-----rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  207 IRLLNINRALR-SLF-----RSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eeEeeechHHH-HHH-----HhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeee
Confidence            99888776544 222     346665555544           44 5566666666666666544

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=94.88  E-value=4  Score=39.58  Aligned_cols=171  Identities=11%  Similarity=0.035  Sum_probs=94.7

Q ss_pred             eCCCcEEEEEEC---C----CCcEEEEecCCCcEEEEeCCCCCC------CC--CCCcceeeecc---cccceEEEEEee
Q 016458          107 LPCAWVMTCAFS---P----TGQSVACGGLDSVCSIFNLNSPTD------KD--GNLPVSRMLSG---HKGYVSCCQYVP  168 (389)
Q Consensus       107 ~~~~~v~~~~~~---~----~~~~l~~~~~dg~i~vw~~~~~~~------~~--~~~~~~~~~~~---~~~~v~~~~~~~  168 (389)
                      ....+|..|+|.   .    ..++|++- ....+.|+...-.+.      ..  -.......+..   -..+..+++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            345778888887   2    22355544 455677777222111      10  11112222221   234678899999


Q ss_pred             CCCcEEEEeeCCCeEEEEeCCCCee----EEEec----Ccc--cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC
Q 016458          169 DEDTHLITSSGDQTCVLWDITTGLR----TSVFG----GEF--QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV  238 (389)
Q Consensus       169 ~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~----~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  238 (389)
                      .....|+.....|...||++.....    .....    ...  .....+.-..+.|.+ +.+.|++++ ...+.++|++.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~-r~~l~~~d~~~  233 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCN-RSKLMLIDFES  233 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEc-CCceEEEECCC
Confidence            8888999999999999999921111    11110    000  011123344788877 444555544 35789999987


Q ss_pred             CCcce-eEEeeeccceEEEEEecC-CCEEEEEecCCeEEEEECCC
Q 016458          239 ASRAV-RTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRT  281 (389)
Q Consensus       239 ~~~~~-~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~  281 (389)
                      ..... .........|..+.-+|. ..+++.-+ ...|...++..
T Consensus       234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~  277 (765)
T PF10214_consen  234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS  277 (765)
T ss_pred             CCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence            63311 122234456888888876 22333332 35788888776

These proteins are found in fungi.

>PRK13684 Ycf48-like protein; Provisional

Probab=94.81  E-value=2.3  Score=36.47  Aligned_cols=112  Identities=16%  Similarity=0.132  Sum_probs=62.1

Q ss_pred             ccceEEEEEecCCCEEEEEecCCeEEE-EECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458          250 EGDVNTVKFFPDGNRFGTGSDDGTCRL-FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (389)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (389)
                      ...+..+.+.|++.+++++ ..|.+.. +| ..++.-.....    .....++.+.+.++++.+++| ..|.+++=....
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~  244 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDD  244 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeC----CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCC
Confidence            4568889999988666555 4455443 22 12222222211    122358999999999887766 556654323444


Q ss_pred             ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       329 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      +................+.++.+.+++..+ .++.+|.+..
T Consensus       245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~-~~G~~G~v~~  284 (334)
T PRK13684        245 LESWSKPIIPEITNGYGYLDLAYRTPGEIW-AGGGNGTLLV  284 (334)
T ss_pred             CCccccccCCccccccceeeEEEcCCCCEE-EEcCCCeEEE
Confidence            443332211001122457889999887654 4556676543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.71  E-value=0.25  Score=39.17  Aligned_cols=70  Identities=30%  Similarity=0.368  Sum_probs=51.0

Q ss_pred             eCCCCCEEEEEecCCcEEEEEcccceEEEeec---CcCC-------CCCCCeeEEEECCCCCeEEeeeCCCeeEEeecce
Q 016458          305 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG---SLQN-------SHEGRITCLGLSADGSALCTGSWDTNLKVNLGFW  374 (389)
Q Consensus       305 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W  374 (389)
                      +..++.+|++-+.+|.+++||+.+++.+..-.   .+..       .....|..+.++.+|.-+++-+ +|..+.    |
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~----y   92 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYS----Y   92 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEE----e
Confidence            44578899999999999999999887654431   1111       3556889999999998777655 577777    7


Q ss_pred             ecccC
Q 016458          375 RVQEG  379 (389)
Q Consensus       375 ~~~~~  379 (389)
                      +.+-+
T Consensus        93 ~~~L~   97 (219)
T PF07569_consen   93 SPDLG   97 (219)
T ss_pred             ccccc
Confidence            76543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.57  E-value=0.68  Score=45.58  Aligned_cols=160  Identities=15%  Similarity=0.219  Sum_probs=91.7

Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEE--------ecCCCEEEEEecCCeEEEEECCCC
Q 016458          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF--------FPDGNRFGTGSDDGTCRLFDIRTG  282 (389)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~l~~~~~dg~i~i~d~~~~  282 (389)
                      .+-+.|.-++..+  +.|+.+.+|+..+. .....+.+-...|..+..        -|.=+++++.+.--.|.++-+.-.
T Consensus        83 ~mGiFpeI~RaWi--TiDn~L~lWny~~~-~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~  159 (1311)
T KOG1900|consen   83 DMGIFPEIGRAWI--TIDNNLFLWNYESD-NELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD  159 (1311)
T ss_pred             eeccchhhcceEE--EeCCeEEEEEcCCC-CccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence            3334443344443  45789999999985 555666665555655543        233344444444455666654322


Q ss_pred             ceeeE---eecc-CCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc--c---ce--------------EEEeecCcC
Q 016458          283 HQLQV---YYQQ-HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL--L---AK--------------VVLNLGSLQ  339 (389)
Q Consensus       283 ~~~~~---~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~---~~--------------~~~~~~~~~  339 (389)
                      +....   +... .-......|+++....+|+.+++| .||.|+=.-..  .   ++              .+.++....
T Consensus       160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~  238 (1311)
T KOG1900|consen  160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP  238 (1311)
T ss_pred             cccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC
Confidence            11111   1000 001122348888888888877776 55544422111  1   01              011111111


Q ss_pred             CCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          340 NSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       340 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      ..+..+|..++.+.....+.+-+..|+|.+    |++..
T Consensus       239 ~~~~dpI~qi~ID~SR~IlY~lsek~~v~~----Y~i~~  273 (1311)
T KOG1900|consen  239 GSSKDPIRQITIDNSRNILYVLSEKGTVSA----YDIGG  273 (1311)
T ss_pred             CCCCCcceeeEeccccceeeeeccCceEEE----EEccC
Confidence            356779999999999999999999999999    99987

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=94.51  E-value=4.9  Score=38.87  Aligned_cols=72  Identities=17%  Similarity=-0.004  Sum_probs=50.2

Q ss_pred             cceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEe----eccC----------CCCCCCCeeEEEeCCCCCEEEEEe
Q 016458          251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY----YQQH----------GENEIPHVTSIAFSISGRLLFAGY  316 (389)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~----------~~~~~~~i~~~~~~~~~~~l~~~~  316 (389)
                      ..|.+++...-+..++....||+|.++|-.+.+.+...    ....          .-.....+..++|||.+-.++.-.
T Consensus       260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~  339 (753)
T PF11635_consen  260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID  339 (753)
T ss_pred             CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence            45667777777888999999999999998887555444    1100          000111344588999999898888


Q ss_pred             cCCcEE
Q 016458          317 SNGDCY  322 (389)
Q Consensus       317 ~dg~i~  322 (389)
                      .+|.+.
T Consensus       340 ~~~~~~  345 (753)
T PF11635_consen  340 EDGKTK  345 (753)
T ss_pred             cCCCce
Confidence            888866

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=94.51  E-value=0.11  Score=30.66  Aligned_cols=29  Identities=31%  Similarity=0.360  Sum_probs=25.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016458            4 SVSELKERHAAAIETVNSLRERLKQKRQQ   32 (389)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   32 (389)
                      ++++|++++..++.|+.+++..+...+..
T Consensus        22 Sv~EL~~RIa~L~aEI~R~~~~~~~K~a~   50 (59)
T PF06698_consen   22 SVEELEERIALLEAEIARLEAAIAKKSAS   50 (59)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999887643

The function of this family is unknown.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.50  E-value=1.9  Score=42.82  Aligned_cols=233  Identities=11%  Similarity=0.001  Sum_probs=105.3

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCC-cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA-WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (389)
                      ......++|+|...++|.++.+|.|+++-...-+.......... .+..+.+-...........+..+.+|......   
T Consensus        35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~---  111 (993)
T KOG1983|consen   35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKT---  111 (993)
T ss_pred             CCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccc---
Confidence            34567899999999999999999999997543322222111111 12222222222222333344455555544311   


Q ss_pred             CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG  225 (389)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  225 (389)
                              ...+...+++..-.+  .-..+.+ ..+.+++||..-........... ..+...+ -...++.........
T Consensus       112 --------~~~~~~~~~~~~~~~--~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~s~~~~~~~~~~  178 (993)
T KOG1983|consen  112 --------GVFLKQEITSFVTDP--PPDWLIG-ENGLVKVSDVLRHQLSDLKYAGT-ESSNFVP-YESLSPTLSIEGLVI  178 (993)
T ss_pred             --------eeecCCcceeccCCC--Ccchhcc-cCceeeEeeechhhhccceeccc-cccccce-eeeeccceeeecccc
Confidence                    111122222222222  1222344 77888888865432221110000 0000000 000000000000000


Q ss_pred             eCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEe
Q 016458          226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF  305 (389)
Q Consensus       226 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (389)
                        +-.-.++.+..  .. ..+..+..++.+..+..... ++.+..-+.+-+|+.........+.....          ..
T Consensus       179 --~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~  242 (993)
T KOG1983|consen  179 --DLDTVLISLPD--AY-LGLSLIEYESLQVLYYSPTK-ILIGFNRGLVVIKDRASKYVQSAYLPNGQ----------LE  242 (993)
T ss_pred             --ccccceeeccc--cc-ccccccccccceeeeecCCC-cceeeeeeeeeehhcccccchhhcccccc----------cC
Confidence              00111111111  11 22333445555555543333 33344456666776554433333322211          12


Q ss_pred             CCCCCEEEEEecCCcEEEEEcccceE
Q 016458          306 SISGRLLFAGYSNGDCYVWDTLLAKV  331 (389)
Q Consensus       306 ~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (389)
                      ++++..++++..||.+.+||...++.
T Consensus       243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  243 SRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             ccCCceEEEEEecCCEEeeecCCCce
Confidence            77889999999999999999888755

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=94.40  E-value=1.1  Score=38.99  Aligned_cols=166  Identities=13%  Similarity=0.122  Sum_probs=93.0

Q ss_pred             CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee-cc----ceE-EEEEecCCCEEEEEecCCeEEEE
Q 016458          204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-EG----DVN-TVKFFPDGNRFGTGSDDGTCRLF  277 (389)
Q Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~----~i~-~~~~~~~~~~l~~~~~dg~i~i~  277 (389)
                      .....+..+-..| +++.+..-+. ..+.++++.+..-..+.+... .+    .|+ .+..-..|..+.+++.||-|.-|
T Consensus       218 ~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW  295 (733)
T COG4590         218 VPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW  295 (733)
T ss_pred             CCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence            3445677777888 7777766554 678888887553222222111 11    122 12222356678889999988776


Q ss_pred             -ECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC
Q 016458          278 -DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS  356 (389)
Q Consensus       278 -d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (389)
                       |++.+............-...++..+.-..+.+-+++-+.+|.+.++.....+.+..-     .--..+.-+++||.+.
T Consensus       296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~-----~~~~~~~~~~~Sp~~~  370 (733)
T COG4590         296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE-----RAYQAPQLVAMSPNQA  370 (733)
T ss_pred             eeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh-----hhhcCcceeeeCcccc
Confidence             5544322111100000001112333333334456777788888888876554444332     2223567789999999


Q ss_pred             eEEeeeCCCeeEEeecceecccCcc
Q 016458          357 ALCTGSWDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       357 ~l~~~~~dg~i~i~~~~W~~~~~~~  381 (389)
                      +|++-. .|.+++    +.+++...
T Consensus       371 ~Ll~e~-~gki~~----~~l~Nr~P  390 (733)
T COG4590         371 YLLSED-QGKIRL----AQLENRNP  390 (733)
T ss_pred             hheeec-CCceEE----EEecCCCC
Confidence            988643 477888    77776543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.32  E-value=1.9  Score=33.33  Aligned_cols=179  Identities=13%  Similarity=0.068  Sum_probs=85.7

Q ss_pred             CCCeEEEEec--CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE-EEecCCCcEEEEeCCCCCCCCCCCcceeee
Q 016458           78 ERNRIVSASQ--DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRML  154 (389)
Q Consensus        78 ~~~~l~~~~~--dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  154 (389)
                      +|.++.+.+.  ...|++||+.+++.+.+.+.....+..=-...-+.++ ...-.+|.-..+|.++-+       ....+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~-------~lg~~  127 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE-------ELGRF  127 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh-------hhccc
Confidence            4556666553  3479999999999887766542112111111112333 334457888888877632       11111


Q ss_pred             cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEE
Q 016458          155 SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW  234 (389)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  234 (389)
                      . ..+.=+.++.  ++.+ |+.+....+++.-|.++...............-..++.+.|-  ++.+.+-.=.+..|...
T Consensus       128 ~-y~GeGWgLt~--d~~~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI  201 (262)
T COG3823         128 S-YEGEGWGLTS--DDKN-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARI  201 (262)
T ss_pred             c-cCCcceeeec--CCcc-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEE
Confidence            1 2233344443  3333 666666677888777665433332211111112223334443  23333222222233333


Q ss_pred             eCCCC-----------CcceeEEeeeccceEEEEEecCCCEEEEEe
Q 016458          235 DTRVA-----------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  269 (389)
Q Consensus       235 d~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  269 (389)
                      |..++           ...+..-..|..-.+.+++.|++..++..+
T Consensus       202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            33332           112222233455678899999775554443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.29  E-value=5.1  Score=38.22  Aligned_cols=87  Identities=17%  Similarity=0.174  Sum_probs=54.6

Q ss_pred             cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC----------Cee--EE-Ee--cC-cccCCCCCCeeEEEeeCCC--Cc
Q 016458          159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITT----------GLR--TS-VF--GG-EFQSGHTADVLSVSISGSN--SR  220 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~--~~-~~--~~-~~~~~~~~~v~~~~~~~~~--~~  220 (389)
                      -.|..+..+|+| .+++..|..|...+ .+..          +..  .. .+  .. .+.......|..+.|+|..  +.
T Consensus        85 f~v~~i~~n~~g-~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNPTG-SLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECCCC-CEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            468889999998 56666666554433 3321          111  10 11  00 1123445678999999953  57


Q ss_pred             EEEEeeCCCceEEEeCCCCCcceeEEe
Q 016458          221 MFVSGSCDSTARLWDTRVASRAVRTFH  247 (389)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~  247 (389)
                      .|++-+.|+.+++||+.....+...+.
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             eEEEEecCCEEEEEecCCCCCCeEEEE
Confidence            888889999999999987655544443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.29  E-value=0.0044  Score=53.21  Aligned_cols=149  Identities=12%  Similarity=0.193  Sum_probs=98.6

Q ss_pred             CCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEE-EEEecCCeEEEEECCCCcee
Q 016458          207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDDGTCRLFDIRTGHQL  285 (389)
Q Consensus       207 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~  285 (389)
                      .......|-|.+.+ ++.++.+..+..||-..  +...... ..+....++|.-++..+ +.+-..+.+.+||+.+....
T Consensus        35 v~pi~~~w~~e~~n-lavaca~tiv~~YD~ag--q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq  110 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHN-LAVACANTIVIYYDKAG--QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ  110 (615)
T ss_pred             cccceeeEecCCCc-eehhhhhhHHHhhhhhc--ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence            34455667774555 67777788888898552  2222222 23445567787777655 44557789999999864322


Q ss_pred             eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (389)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  365 (389)
                      ..-..   ..+.  -.-+.|++.+..++.|...|.+.|++..+.+.....    ..|..++++++|.+.+. .+.++.|.
T Consensus       111 qLE~g---g~~s--~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~----Gkh~RRgtq~av~lEd~-vil~dcd~  180 (615)
T KOG2247|consen  111 QLESG---GTSS--KSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM----GKHQRRGTQIAVTLEDY-VILCDCDN  180 (615)
T ss_pred             HHhcc---Ccch--HHHHhhccCCccccccccccceEEEeccchhhhhhh----cccccceeEEEecccce-eeecCcHH
Confidence            21111   1111  122779999999999999999999998887776665    55899999999998764 55555555


Q ss_pred             eeEE
Q 016458          366 NLKV  369 (389)
Q Consensus       366 ~i~i  369 (389)
                      .+.+
T Consensus       181 ~L~v  184 (615)
T KOG2247|consen  181 TLSV  184 (615)
T ss_pred             HHHH
Confidence            5443

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.28  E-value=1.3  Score=31.45  Aligned_cols=113  Identities=9%  Similarity=0.122  Sum_probs=69.7

Q ss_pred             EeeCCCCcEEEEeeCCCceEEEeCCCCC-------cceeEEeeeccceEEEEEec-----CCCEEEEEecCCeEEEEECC
Q 016458          213 SISGSNSRMFVSGSCDSTARLWDTRVAS-------RAVRTFHGHEGDVNTVKFFP-----DGNRFGTGSDDGTCRLFDIR  280 (389)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~  280 (389)
                      .|.. ....|++++..|.|.|++.....       ..+..+. -...|++++-.+     +...|+.|+. ..+..||+.
T Consensus         5 kfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~   81 (136)
T PF14781_consen    5 KFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE   81 (136)
T ss_pred             EeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence            3444 34467788888999999876432       2233333 455677776554     3456777665 589999998


Q ss_pred             CCceeeEeeccCCCCCCCCeeEEEeCC----CCCEEEEEecCCcEEEEEcccceEEEee
Q 016458          281 TGHQLQVYYQQHGENEIPHVTSIAFSI----SGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (389)
                      ....+.......      .+.++.+-.    +.+++++| .+..|.-||....+..++.
T Consensus        82 ~N~d~Fyke~~D------Gvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   82 NNSDLFYKEVPD------GVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             cCchhhhhhCcc------ceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence            776554433332      266666632    23445544 5668888888777766654

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.21  E-value=1.4  Score=31.37  Aligned_cols=117  Identities=9%  Similarity=0.055  Sum_probs=72.4

Q ss_pred             EEEEEcCCCCeEEEEecCCcEEEEeCCCCC--------eeEEEeeCCCcEEEEEECC-----CCcEEEEecCCCcEEEEe
Q 016458           71 YSLDWTSERNRIVSASQDGRLIVWNALTSQ--------KTHAIKLPCAWVMTCAFSP-----TGQSVACGGLDSVCSIFN  137 (389)
Q Consensus        71 ~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~vw~  137 (389)
                      ..-.|......|++++.-|+|.|++.....        .+..+... ..|++++-.+     ....|+.|+ ...+..||
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-~~italaaG~l~~~~~~D~LliGt-~t~llaYD   79 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-QEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD   79 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC-CceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence            344676777789999999999999876432        33444433 4477775433     345666665 45788999


Q ss_pred             CCCCCCCCCCCcceeeecccccceEEEEEeeCC--CcEEEEeeCCCeEEEEeCCCCeeEEEe
Q 016458          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCVLWDITTGLRTSVF  197 (389)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~  197 (389)
                      +.....        ..++.-...|.++.+-.-+  +.-++..+.+..|.-||.+..+.....
T Consensus        80 V~~N~d--------~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   80 VENNSD--------LFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             cccCch--------hhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            987542        1122233556666663322  234666666788888887766655543

>PRK13979 DNA topoisomerase IV subunit A; Provisional

Probab=94.08  E-value=6.7  Score=38.78  Aligned_cols=160  Identities=6%  Similarity=-0.030  Sum_probs=83.5

Q ss_pred             EEcCCCCeEEEEecCCcEEEEeCCCCCee----EEEe-eCCCcEEEEEECCCCcEEEEecCCCc---EEEEeCCCCCCCC
Q 016458           74 DWTSERNRIVSASQDGRLIVWNALTSQKT----HAIK-LPCAWVMTCAFSPTGQSVACGGLDSV---CSIFNLNSPTDKD  145 (389)
Q Consensus        74 ~~~~~~~~l~~~~~dg~v~iw~~~~~~~~----~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~---i~vw~~~~~~~~~  145 (389)
                      .+-++.+.+++-+.+|.|+--+..+-+..    .... .....+..+.-......++.-+..|.   +.+|++.......
T Consensus       511 dlI~~E~v~v~lS~~GyIKr~~~~~~~~q~~g~~~~~~ke~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~  590 (957)
T PRK13979        511 ELIVVEDVVITLSNEGFIKRIPLKSYNRSNSNVEDIEYREGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKE  590 (957)
T ss_pred             HcCCCcceEEEEecCCEEEEccccccccccccccccccCCCCceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCC
Confidence            45567778899999998887765432111    0110 12244555544445555655566675   4456665543211


Q ss_pred             CCCcceeee---cccccceEEE-EEee-CCCcEEEEeeCCCeEEEEeCCCCee----EEEecCcccCCCCCCeeEEEeeC
Q 016458          146 GNLPVSRML---SGHKGYVSCC-QYVP-DEDTHLITSSGDQTCVLWDITTGLR----TSVFGGEFQSGHTADVLSVSISG  216 (389)
Q Consensus       146 ~~~~~~~~~---~~~~~~v~~~-~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~  216 (389)
                      .-.+....+   ......|..+ .... +.+.+++.++..|.|+...+..-..    ...+.    ....+.+..+....
T Consensus       591 ~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef~~~r~~~~aik----L~e~DeLV~v~~~~  666 (957)
T PRK13979        591 KGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVTNYTKLMALK----LKKGEKLIKVKLVD  666 (957)
T ss_pred             CCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhccccccceEEEE----cCCCCEEEEEEEcC
Confidence            111111111   1012334333 3321 1235788899999999988753221    11111    12345565555554


Q ss_pred             CC--CcEEEEeeCCCceEEEeCC
Q 016458          217 SN--SRMFVSGSCDSTARLWDTR  237 (389)
Q Consensus       217 ~~--~~~l~~~~~dg~i~i~d~~  237 (389)
                      ..  ...++..+..|....|+..
T Consensus       667 ~~~~~~~Iil~Tk~G~airF~~~  689 (957)
T PRK13979        667 RTREEKFIKIKTKKGLSFTVEEP  689 (957)
T ss_pred             CCCCCCEEEEEeCCCcEEEEEHH
Confidence            22  2467777888888888764

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=94.05  E-value=3.4  Score=35.28  Aligned_cols=105  Identities=10%  Similarity=0.118  Sum_probs=52.3

Q ss_pred             cEEEEeeCC-----CeEEEEeCCCCeeE---EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-----CCceEEEeCCC
Q 016458          172 THLITSSGD-----QTCVLWDITTGLRT---SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----DSTARLWDTRV  238 (389)
Q Consensus       172 ~~l~~~~~d-----g~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~  238 (389)
                      .+++.|+.+     ..+..+|+.+....   .... ..  .....-.+++..  ++.+.+.|+.     ...+..||+.+
T Consensus        74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~-~l--p~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~  148 (323)
T TIGR03548        74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIG-NL--PFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLET  148 (323)
T ss_pred             EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC-CC--CcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCC
Confidence            567777754     35777787766531   2221 11  111111233333  5667777764     23578888775


Q ss_pred             CCcceeEEee--eccceEEEEEecCCCEEEEEecCC----eEEEEECCCCc
Q 016458          239 ASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDG----TCRLFDIRTGH  283 (389)
Q Consensus       239 ~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~  283 (389)
                      ..  -..+..  ........+...++++.+.|+.++    .+.+||..+.+
T Consensus       149 ~~--W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       149 QE--WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             CC--eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            41  112211  011111222233677777887654    35688887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.85  E-value=0.46  Score=37.75  Aligned_cols=78  Identities=10%  Similarity=0.181  Sum_probs=51.1

Q ss_pred             ECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeec-------ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                      +..++.+|++.+.+|.+++||+...+.......+...+.       .....|..+....+| .-+++ -.+|..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~-lsng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVT-LSNGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEE-EeCCCEEEeccc
Confidence            345788899999999999999998664322222222222       355678888888776 33444 345788888876


Q ss_pred             CCeeEEE
Q 016458          190 TGLRTSV  196 (389)
Q Consensus       190 ~~~~~~~  196 (389)
                      -+.-...
T Consensus        96 L~~W~~v  102 (219)
T PF07569_consen   96 LGCWIRV  102 (219)
T ss_pred             cceeEEe
Confidence            6554443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=93.85  E-value=4  Score=35.30  Aligned_cols=43  Identities=5%  Similarity=-0.021  Sum_probs=21.4

Q ss_pred             CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC
Q 016458          181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  228 (389)
Q Consensus       181 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  228 (389)
                      ..+.+||..+.+-...-..   ......-.+++..  ++++++.|+.+
T Consensus       168 ~~v~~YDp~t~~W~~~~~~---p~~~r~~~~~~~~--~~~iyv~GG~~  210 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGEN---PFLGTAGSAIVHK--GNKLLLINGEI  210 (346)
T ss_pred             ceEEEEECCCCceeECccC---CCCcCCCceEEEE--CCEEEEEeeee
Confidence            4688899887654433211   1001112233332  56777777653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.84  E-value=2.1  Score=38.03  Aligned_cols=140  Identities=15%  Similarity=0.102  Sum_probs=0.0

Q ss_pred             EEEeeCCCceEEEeCCCCCcceeEEeeeccc---------------------eEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458          222 FVSGSCDSTARLWDTRVASRAVRTFHGHEGD---------------------VNTVKFFPDGNRFGTGSDDGTCRLFDIR  280 (389)
Q Consensus       222 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------------------i~~~~~~~~~~~l~~~~~dg~i~i~d~~  280 (389)
                      ++.+..| .++.||-+...-.+..+++..++                     |..+..++.|..++-.+.+|.+.++=.+
T Consensus        55 ~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~  133 (741)
T KOG4460|consen   55 VVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMELPK  133 (741)
T ss_pred             hhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEchh


Q ss_pred             CCceeeEeeccCCC---------------CCCCCeeEEEeCCCC---CEEEEEecCCcEEEEEcccceEEEeecCcCCCC
Q 016458          281 TGHQLQVYYQQHGE---------------NEIPHVTSIAFSISG---RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH  342 (389)
Q Consensus       281 ~~~~~~~~~~~~~~---------------~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  342 (389)
                      ....-..+......               +..-.+..++|+|+.   ..|..-++|+.|++||+.....+..........
T Consensus       134 rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpgepgRS  213 (741)
T KOG4460|consen  134 RWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPGEPGRS  213 (741)
T ss_pred             hcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCCCcCCC


Q ss_pred             CCCeeEEEECCCCCeEEeee
Q 016458          343 EGRITCLGLSADGSALCTGS  362 (389)
Q Consensus       343 ~~~v~~~~~~~~~~~l~~~~  362 (389)
                      ...+.-..|-...-++....
T Consensus       214 ~tn~Si~sFGe~~~~~l~~~  233 (741)
T KOG4460|consen  214 PTNVSILSFGEEESLVLNKG  233 (741)
T ss_pred             CccceeeccCCcceeeeccC

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.56  E-value=8.9  Score=38.42  Aligned_cols=164  Identities=12%  Similarity=0.098  Sum_probs=93.9

Q ss_pred             EEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEE-CC-------CCcEEEEecCCCcEEEEeCCCCC
Q 016458           71 YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF-SP-------TGQSVACGGLDSVCSIFNLNSPT  142 (389)
Q Consensus        71 ~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~-~~-------~~~~l~~~~~dg~i~vw~~~~~~  142 (389)
                      +.+-+-|.-++.. .+.|+.+.+|+++++.....+.+-...|..+.. -|       .=+++++-+.--.|.++-+.-..
T Consensus        82 ~~mGiFpeI~RaW-iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~  160 (1311)
T KOG1900|consen   82 TDMGIFPEIGRAW-ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE  160 (1311)
T ss_pred             eeeccchhhcceE-EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence            3344444433333 245788999999998887777776666666543 22       22445544455567776654433


Q ss_pred             CCCCCCcce--eeecccccceEEEEEeeCCCcEEEEeeCCCeEEE--EeCCCC---e-eE-------------EEecCcc
Q 016458          143 DKDGNLPVS--RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL--WDITTG---L-RT-------------SVFGGEF  201 (389)
Q Consensus       143 ~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i--wd~~~~---~-~~-------------~~~~~~~  201 (389)
                      .........  ..+......|.|+....+| + ++.+|.||.|.=  |....+   + +.             ..+. ..
T Consensus       161 ~~~~~~~f~~~~~i~~dg~~V~~I~~t~nG-R-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~-~~  237 (1311)
T KOG1900|consen  161 FTGELSIFNTSFKISVDGVSVNCITYTENG-R-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL-SV  237 (1311)
T ss_pred             ccCcccccccceeeecCCceEEEEEeccCC-c-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhh-cC
Confidence            221111111  2222335678888877766 4 555566664332  222221   0 00             0000 11


Q ss_pred             cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCC
Q 016458          202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA  239 (389)
Q Consensus       202 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  239 (389)
                      ...+..+|..+++.. ..+++.+-+..|.|.+||+...
T Consensus       238 ~~~~~dpI~qi~ID~-SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  238 PGSSKDPIRQITIDN-SRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             CCCCCCcceeeEecc-ccceeeeeccCceEEEEEccCC
Confidence            124577899999987 7788999999999999999863

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=93.32  E-value=5.2  Score=35.06  Aligned_cols=41  Identities=10%  Similarity=0.046  Sum_probs=20.8

Q ss_pred             eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458          182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (389)
Q Consensus       182 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (389)
                      .+.+||..+..-...-..   ......-.++...  ++++++.|+.
T Consensus       190 ~v~~YD~~t~~W~~~~~~---p~~~~~~~a~v~~--~~~iYv~GG~  230 (376)
T PRK14131        190 EVLSYDPSTNQWKNAGES---PFLGTAGSAVVIK--GNKLWLINGE  230 (376)
T ss_pred             eEEEEECCCCeeeECCcC---CCCCCCcceEEEE--CCEEEEEeee
Confidence            588899888765442211   1111112233333  5567777764

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.02  E-value=1.1  Score=34.20  Aligned_cols=32  Identities=13%  Similarity=0.161  Sum_probs=25.9

Q ss_pred             cceEEEEEeeCC-----CcEEEEeeCCCeEEEEeCCC
Q 016458          159 GYVSCCQYVPDE-----DTHLITSSGDQTCVLWDITT  190 (389)
Q Consensus       159 ~~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~  190 (389)
                      ..+..++|+|.|     .-+|++.+.++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999954     35788889999999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]

Probab=92.94  E-value=0.28  Score=28.43  Aligned_cols=27  Identities=37%  Similarity=0.513  Sum_probs=23.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458            4 SVSELKERHAAAIETVNSLRERLKQKR   30 (389)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~   30 (389)
                      ++.||++|+..++.|+++++.++..+.
T Consensus        26 sV~El~eRIalLq~EIeRlkAe~~kK~   52 (65)
T COG5509          26 SVAELEERIALLQAEIERLKAELAKKK   52 (65)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            578999999999999999998887764

>PLN02153 epithiospecifier protein

Probab=92.86  E-value=5.7  Score=34.25  Aligned_cols=67  Identities=12%  Similarity=0.106  Sum_probs=34.0

Q ss_pred             CcEEEEeeCC-----CeEEEEeCCCCeeEEEecCcccC-CCCCCeeEEEeeCCCCcEEEEeeCC-----------CceEE
Q 016458          171 DTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQS-GHTADVLSVSISGSNSRMFVSGSCD-----------STARL  233 (389)
Q Consensus       171 ~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d-----------g~i~i  233 (389)
                      +.+++.|+.+     ..+.+||+.+.+-...-...... .....-.+++..  ++++++.|+.+           ..+.+
T Consensus        86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEE
Confidence            3667777653     35788998876543321100000 111112233333  56677777754           24677


Q ss_pred             EeCCCC
Q 016458          234 WDTRVA  239 (389)
Q Consensus       234 ~d~~~~  239 (389)
                      ||..+.
T Consensus       164 yd~~~~  169 (341)
T PLN02153        164 YNIADG  169 (341)
T ss_pred             EECCCC
Confidence            887754

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=92.77  E-value=6  Score=34.27  Aligned_cols=187  Identities=12%  Similarity=0.193  Sum_probs=103.4

Q ss_pred             cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC---CCCc---EEEEeeCC---CceEEEeCCCCCcc
Q 016458          172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG---SNSR---MFVSGSCD---STARLWDTRVASRA  242 (389)
Q Consensus       172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~---~l~~~~~d---g~i~i~d~~~~~~~  242 (389)
                      .+++....++-+.+||+..... ..+.       .+.+..+..-.   -++.   +++++..+   ..|++|.+......
T Consensus        69 SlIigTdK~~GL~VYdL~Gk~l-q~~~-------~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~  140 (381)
T PF02333_consen   69 SLIIGTDKKGGLYVYDLDGKEL-QSLP-------VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE  140 (381)
T ss_dssp             -EEEEEETTTEEEEEETTS-EE-EEE--------SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred             ceEEEEeCCCCEEEEcCCCcEE-Eeec-------CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence            5788888889999999976544 4441       12334333321   0222   23333332   46999977632223


Q ss_pred             eeEEee-------eccceEEEEEe--c-CCC-EEEEEecCCeEEEEECCC---Cc----eeeEeeccCCCCCCCCeeEEE
Q 016458          243 VRTFHG-------HEGDVNTVKFF--P-DGN-RFGTGSDDGTCRLFDIRT---GH----QLQVYYQQHGENEIPHVTSIA  304 (389)
Q Consensus       243 ~~~~~~-------~~~~i~~~~~~--~-~~~-~l~~~~~dg~i~i~d~~~---~~----~~~~~~~~~~~~~~~~i~~~~  304 (389)
                      +..+..       ....+..+|+.  | +|. +.++...+|.+..|.+..   +.    .++.+....      .+-.|.
T Consensus       141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s------Q~EGCV  214 (381)
T PF02333_consen  141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS------QPEGCV  214 (381)
T ss_dssp             EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-------EEEEE
T ss_pred             ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC------cceEEE
Confidence            333321       11236677764  3 344 566778899998888752   22    334443322      378888


Q ss_pred             eCCCCCEEEEEecCCcEEEEEccc-----ceEEEeecCcCCCCCCCeeEEEEC--CCC--CeEEeeeCCCeeEEeeccee
Q 016458          305 FSISGRLLFAGYSNGDCYVWDTLL-----AKVVLNLGSLQNSHEGRITCLGLS--ADG--SALCTGSWDTNLKVNLGFWR  375 (389)
Q Consensus       305 ~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~v~~~~~~--~~~--~~l~~~~~dg~i~i~~~~W~  375 (389)
                      ......+|+.+-++--|.-|+.+.     +..+.....  ......|..|++-  +++  -+|++.-.++...|    |+
T Consensus       215 VDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g--~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~V----y~  288 (381)
T PF02333_consen  215 VDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADG--DGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAV----YD  288 (381)
T ss_dssp             EETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSS--SSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEE----EE
T ss_pred             EecccCCEEEecCccEEEEEecCCCCCCcceeeecccc--cccccCccceEEEecCCCCeEEEEEcCCCCeEEE----Ee
Confidence            888888999998887777777652     222222211  2344577777764  333  34555555788999    98


Q ss_pred             ccc
Q 016458          376 VQE  378 (389)
Q Consensus       376 ~~~  378 (389)
                      .+.
T Consensus       289 r~~  291 (381)
T PF02333_consen  289 REG  291 (381)
T ss_dssp             SST
T ss_pred             cCC
Confidence            774

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=92.52  E-value=4.8  Score=32.50  Aligned_cols=149  Identities=13%  Similarity=0.098  Sum_probs=0.0

Q ss_pred             EEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC---CCceEEEeCCC-----CCcceeEEeeeccceEEE
Q 016458          185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---DSTARLWDTRV-----ASRAVRTFHGHEGDVNTV  256 (389)
Q Consensus       185 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~-----~~~~~~~~~~~~~~i~~~  256 (389)
                      +||+.+++.....     ......+.+-.+.+ ++.++.+|+.   ...+++++...     ........-.....-.+.
T Consensus        50 ~yD~~tn~~rpl~-----v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~  123 (243)
T PF07250_consen   50 EYDPNTNTFRPLT-----VQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA  123 (243)
T ss_pred             EEecCCCcEEecc-----CCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccc


Q ss_pred             EEecCCCEEEEEecCC-eEEEEEC----CCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE
Q 016458          257 KFFPDGNRFGTGSDDG-TCRLFDI----RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  331 (389)
Q Consensus       257 ~~~~~~~~l~~~~~dg-~i~i~d~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (389)
                      ..-|||+.|+.|+.+. ...+|.-    ........+...........--.+...|+|++++.+..+.  .|||..+.+.
T Consensus       124 ~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v  201 (243)
T PF07250_consen  124 TTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTV  201 (243)
T ss_pred             eECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeE


Q ss_pred             EEeecCcCCC
Q 016458          332 VLNLGSLQNS  341 (389)
Q Consensus       332 ~~~~~~~~~~  341 (389)
                      +..+..+..+
T Consensus       202 ~~~lP~lPg~  211 (243)
T PF07250_consen  202 VRTLPDLPGG  211 (243)
T ss_pred             EeeCCCCCCC

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.45  E-value=0.96  Score=24.54  Aligned_cols=40  Identities=10%  Similarity=0.187  Sum_probs=27.7

Q ss_pred             CCCCeEEEEe-cCCcEEEEeCCCCCeeEEEeeCCCcEEEEEE
Q 016458           77 SERNRIVSAS-QDGRLIVWNALTSQKTHAIKLPCAWVMTCAF  117 (389)
Q Consensus        77 ~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~  117 (389)
                      |++++|+++. .+++|.++|..+++.+..+... .....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            5677666655 5789999999988888877764 33344444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.35  E-value=4.4  Score=31.69  Aligned_cols=113  Identities=10%  Similarity=0.128  Sum_probs=0.0

Q ss_pred             EEcCCC-CeEEEEecCCcEEEEeCCCCCeeEEEeeCC-CcEEEEEECCCCcEEEEe---cCCC---cEEEE---------
Q 016458           74 DWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACG---GLDS---VCSIF---------  136 (389)
Q Consensus        74 ~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~---~~dg---~i~vw---------  136 (389)
                      ++...| +.|+.+...+.|.+|++............. +.|..+.++..|+++++-   ....   .+++|         
T Consensus        22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~  101 (215)
T PF14761_consen   22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE  101 (215)
T ss_pred             eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc


Q ss_pred             -----------eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeC
Q 016458          137 -----------NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI  188 (389)
Q Consensus       137 -----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  188 (389)
                                 ...............-..-.-..++.+++-.|-.+++++  +.++.+.+|.+
T Consensus       102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV--g~~~~l~lf~l  162 (215)
T PF14761_consen  102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV--GCGNKLVLFTL  162 (215)
T ss_pred             CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE--EcCCEEEEEEE

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.25  E-value=6  Score=33.07  Aligned_cols=171  Identities=13%  Similarity=0.131  Sum_probs=91.8

Q ss_pred             eEEEEeCCCCeeEEEecCcccCC-CCCCeeEEEeeCCCC----cEEE-EeeCCCceEEEeCCCCCcceeEEee-------
Q 016458          182 TCVLWDITTGLRTSVFGGEFQSG-HTADVLSVSISGSNS----RMFV-SGSCDSTARLWDTRVASRAVRTFHG-------  248 (389)
Q Consensus       182 ~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~----~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~-------  248 (389)
                      .|.+||+.+++.+..+....... ..+.+..+.+...++    .++. +=...+.|.++|+.++ +..+.+..       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~-~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATG-KSWRVLHNSFSPDPD  113 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTT-EEEEEETCGCTTS-S
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCC-cEEEEecCCcceecc
Confidence            57788999988877775432222 356678888876332    2333 3334468999999876 32222211       


Q ss_pred             ------------eccceEEEEEec---CCCEEEEEecCCeEEEEECCC-----Cce---------eeEeeccCCCCCCCC
Q 016458          249 ------------HEGDVNTVKFFP---DGNRFGTGSDDGTCRLFDIRT-----GHQ---------LQVYYQQHGENEIPH  299 (389)
Q Consensus       249 ------------~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~-----~~~---------~~~~~~~~~~~~~~~  299 (389)
                                  ....+..++.+|   +++.|+-....+. ++|.+.+     ...         ...+.. .    ...
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~-k----~~~  187 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGD-K----GSQ  187 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE--------S
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccc-c----CCC
Confidence                        122356666655   5556665543321 2333221     110         011100 0    123


Q ss_pred             eeEEEeCCCCCEEEEEecCCcEEEEEcccce---EEEeecCcCCCC-CCCeeEEEECC--CCCeEEee
Q 016458          300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAK---VVLNLGSLQNSH-EGRITCLGLSA--DGSALCTG  361 (389)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~  361 (389)
                      ...++++++|.++++--..+.|..|+....-   ....+..  ... -..+.++.+.+  +|.+.+..
T Consensus       188 s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~--d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  188 SDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ--DPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             ECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE---CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEE--cCceeeccceeeeccccCceEEEEE
Confidence            5678899999988888889999999987611   1111110  222 35678899988  77665554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PLN02193 nitrile-specifier protein

Probab=92.19  E-value=8.9  Score=34.85  Aligned_cols=108  Identities=8%  Similarity=-0.029  Sum_probs=53.9

Q ss_pred             CcEEEEeeCCC-----eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC----CceEEEeCCCCCc
Q 016458          171 DTHLITSSGDQ-----TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----STARLWDTRVASR  241 (389)
Q Consensus       171 ~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~  241 (389)
                      +.+++.|+.++     .+..||+.+.+-...-.......... -..++..  ++++++.++.+    ..+.+||+.+. .
T Consensus       279 ~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~-~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~-~  354 (470)
T PLN02193        279 ENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRG-GAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQD-K  354 (470)
T ss_pred             CEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCC-CcEEEEE--CCcEEEEECCCCCccCceEEEECCCC-E
Confidence            36777777543     46788888765433211000001111 1222222  45666666655    45888998764 1


Q ss_pred             ceeEEeee-----ccceEEEEEecCCCEEEEEecC--------------CeEEEEECCCCce
Q 016458          242 AVRTFHGH-----EGDVNTVKFFPDGNRFGTGSDD--------------GTCRLFDIRTGHQ  284 (389)
Q Consensus       242 ~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~  284 (389)
                       ...+...     .....++ ..-++++++.|+.+              ..+.+||+.+.+-
T Consensus       355 -W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W  414 (470)
T PLN02193        355 -WTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW  414 (470)
T ss_pred             -EEEeccCCCCCCCcceeEE-EEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEE
Confidence             2222111     0011122 22256777777753              2478888876544

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.17  E-value=1.1  Score=24.32  Aligned_cols=30  Identities=23%  Similarity=0.278  Sum_probs=23.5

Q ss_pred             CCCCEEEEEe-cCCcEEEEEcccceEEEeec
Q 016458          307 ISGRLLFAGY-SNGDCYVWDTLLAKVVLNLG  336 (389)
Q Consensus       307 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~  336 (389)
                      |++++|+++. .++.|.++|..+++.+..+.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            5777777765 47799999999888888773

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=91.95  E-value=13  Score=36.15  Aligned_cols=197  Identities=13%  Similarity=0.068  Sum_probs=107.5

Q ss_pred             cEEEEeeCCCeEEEEeCCCCeeEEEec-Ccc--cCCCCCCeeEEEee-CCCCcEEEEeeCC---CceEEEeCCCCC----
Q 016458          172 THLITSSGDQTCVLWDITTGLRTSVFG-GEF--QSGHTADVLSVSIS-GSNSRMFVSGSCD---STARLWDTRVAS----  240 (389)
Q Consensus       172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~--~~~~~~~v~~~~~~-~~~~~~l~~~~~d---g~i~i~d~~~~~----  240 (389)
                      .-+++....|.+++|=.+......... .+.  .......++..++. ..+++.++.++.+   +.|++|.+.-..    
T Consensus        63 ~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~  142 (753)
T PF11635_consen   63 SACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKP  142 (753)
T ss_pred             eEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcC
Confidence            346677888999999774332222221 100  01234556666665 2355455554544   788887532110    


Q ss_pred             ----c---ceeEEe-e--------------------eccceEEEEEec-------CCCEEEEEec----CCeEEEEECCC
Q 016458          241 ----R---AVRTFH-G--------------------HEGDVNTVKFFP-------DGNRFGTGSD----DGTCRLFDIRT  281 (389)
Q Consensus       241 ----~---~~~~~~-~--------------------~~~~i~~~~~~~-------~~~~l~~~~~----dg~i~i~d~~~  281 (389)
                          .   +...+. .                    .-..++.+.|-+       ....+++.+.    ...|.-|.++.
T Consensus       143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~  222 (753)
T PF11635_consen  143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE  222 (753)
T ss_pred             ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence                0   111110 0                    112455666654       2234444432    34699999876


Q ss_pred             Cce-eeEeeccC--------------------CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee----c
Q 016458          282 GHQ-LQVYYQQH--------------------GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL----G  336 (389)
Q Consensus       282 ~~~-~~~~~~~~--------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~  336 (389)
                      ... +.......                    .......|.+++...-+.+++....||+|.++|..+.+.+...    .
T Consensus       223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~  302 (753)
T PF11635_consen  223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGE  302 (753)
T ss_pred             cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccC
Confidence            431 11110000                    0011234677777777889999999999999998776554333    1


Q ss_pred             Cc-----------CCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458          337 SL-----------QNSHEGRITCLGLSADGSALCTGSWDTNLK  368 (389)
Q Consensus       337 ~~-----------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  368 (389)
                      ..           ...+..++..++|||++..++.-..+|.+.
T Consensus       303 ~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  303 PPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             CccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence            00           001112445689999999999999999865

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=91.81  E-value=2.1  Score=34.62  Aligned_cols=71  Identities=8%  Similarity=0.109  Sum_probs=48.6

Q ss_pred             ccCcEEEEEEcCC-------CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEE---CCCCcEEEEecCCCcEEE
Q 016458           66 HAGKVYSLDWTSE-------RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF---SPTGQSVACGGLDSVCSI  135 (389)
Q Consensus        66 h~~~v~~~~~~~~-------~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~dg~i~v  135 (389)
                      +...|+||+--+.       -..|+.|+.+|.|.|.|..............-++.-.+.   ..-.-.+++++.||.|++
T Consensus       175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~  254 (257)
T PF14779_consen  175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT  254 (257)
T ss_pred             cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence            4455777765431       147999999999999999888888888777665532222   112345777888998876


Q ss_pred             E
Q 016458          136 F  136 (389)
Q Consensus       136 w  136 (389)
                      .
T Consensus       255 i  255 (257)
T PF14779_consen  255 I  255 (257)
T ss_pred             E
Confidence            4

>PLN02193 nitrile-specifier protein

Probab=91.81  E-value=9.8  Score=34.57  Aligned_cols=152  Identities=12%  Similarity=0.043  Sum_probs=71.1

Q ss_pred             cEEEEeeCC-------CeEEEEeCCCCeeEEEecCcccCCCCCC-eeEEEeeCCCCcEEEEeeCC-----CceEEEeCCC
Q 016458          172 THLITSSGD-------QTCVLWDITTGLRTSVFGGEFQSGHTAD-VLSVSISGSNSRMFVSGSCD-----STARLWDTRV  238 (389)
Q Consensus       172 ~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~  238 (389)
                      .+++.|+.+       ..+.+||+.+..-.... .......... -.+++..  ++.+++.|+.+     ..+..||+.+
T Consensus       177 ~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~-~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~t  253 (470)
T PLN02193        177 KIYSFGGEFTPNQPIDKHLYVFDLETRTWSISP-ATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTTT  253 (470)
T ss_pred             EEEEECCcCCCCCCeeCcEEEEECCCCEEEeCC-CCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECCC
Confidence            566666643       24778898876544221 1000001011 1122222  56677777765     3577888875


Q ss_pred             CCcceeEEeee---ccc--eEEEEEecCCCEEEEEecCC-----eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC
Q 016458          239 ASRAVRTFHGH---EGD--VNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS  308 (389)
Q Consensus       239 ~~~~~~~~~~~---~~~--i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  308 (389)
                      .  ....+...   ..+  -.+++. -++++.+.|+.++     .+..||+.+.+-...-..............+.  -+
T Consensus       254 ~--~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~--~~  328 (470)
T PLN02193        254 N--EWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV--VQ  328 (470)
T ss_pred             C--EEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE--EC
Confidence            4  11111111   001  112222 2566677777543     46778877654322111000000000111222  25


Q ss_pred             CCEEEEEecC----CcEEEEEcccceE
Q 016458          309 GRLLFAGYSN----GDCYVWDTLLAKV  331 (389)
Q Consensus       309 ~~~l~~~~~d----g~i~i~d~~~~~~  331 (389)
                      +++++.++.+    ..+.+||+.+.+-
T Consensus       329 gkiyviGG~~g~~~~dv~~yD~~t~~W  355 (470)
T PLN02193        329 GKVWVVYGFNGCEVDDVHYYDPVQDKW  355 (470)
T ss_pred             CcEEEEECCCCCccCceEEEECCCCEE
Confidence            6776766655    4689999887654

>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial

Probab=91.68  E-value=13  Score=35.66  Aligned_cols=160  Identities=11%  Similarity=-0.020  Sum_probs=78.8

Q ss_pred             EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCe-eEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC
Q 016458           70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL  148 (389)
Q Consensus        70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  148 (389)
                      +..-++-++...+++.+.+|.|+--....-.. ...++.. ..+..+........++..+.+|.+.-+....-.......
T Consensus       485 ~~~~~~i~~e~v~VilTk~G~IKr~~~~~~~~saikLKeg-D~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP~GR~aG  563 (735)
T TIGR01062       485 VSEIDMIPKEPVTIILSKMGWVRSAKGHDIDLSTLKYKAG-DSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLPSARGQG  563 (735)
T ss_pred             cchhhcccCcceEEEEecCCEEEeccccccchhccCcCCC-CeEEEEEEecCCCEEEEEECCCeEEEEEhHhcCcCccCC
Confidence            44445567778889999999888665443221 1122222 335555445555567777778877666544311111111


Q ss_pred             cceee-ec-ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-------eeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458          149 PVSRM-LS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-------LRTSVFGGEFQSGHTADVLSVSISGSNS  219 (389)
Q Consensus       149 ~~~~~-~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (389)
                      ..... +. .....|..+....++ ..++..+..|.++...+..-       .....+     . ....+..+.....+.
T Consensus       564 gpV~~~L~L~~gE~Iv~~~~v~~~-~~lLlaT~~GyGKrt~lse~~~~~RaGKgvi~L-----k-~~d~lv~v~~v~~~d  636 (735)
T TIGR01062       564 EPLTGKLLLPIGATITNILMYSPN-QLLLMASDAGYGFLCNFNDLIARNKAGKALINL-----P-ENASVIAPLPVNGDS  636 (735)
T ss_pred             ceeEeeecCCCCCEEEEEEEecCC-cEEEEEEcCCcEEEEEhHhccccCcCCeEEEEe-----C-CCCEEEEEEEEcCCC
Confidence            11111 11 122334444433332 45777888888777665322       222222     1 122233322222122


Q ss_pred             cEEEEeeCCCceEEEeCC
Q 016458          220 RMFVSGSCDSTARLWDTR  237 (389)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~  237 (389)
                      ..++..+.+|.+..+++.
T Consensus       637 d~V~liT~~GrlLrf~v~  654 (735)
T TIGR01062       637 DMIAAITEAGRMLVFPID  654 (735)
T ss_pred             CEEEEEeCCCcEEEEEHH
Confidence            345566667777776654

Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=91.48  E-value=6  Score=37.05  Aligned_cols=111  Identities=14%  Similarity=0.226  Sum_probs=66.6

Q ss_pred             CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                      ..++++.-+|.++.++.+..||.|++|++.....        ..+.....+-..+.|...|   +++++.|..+.-|.- 
T Consensus        15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q--------ski~~~~~p~~nlv~tnhg---l~~~tsdrr~la~~~-   82 (1636)
T KOG3616|consen   15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ--------SKICEEAKPKENLVFTNHG---LVTATSDRRALAWKE-   82 (1636)
T ss_pred             ceeeeeeecCCCceEEEEecCCcEEEEeecccch--------hhhhhhcCCccceeeeccc---eEEEeccchhheeec-
Confidence            4577888899999999999999999999876431        1111122333445666654   778888888888863 


Q ss_pred             CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeC
Q 016458          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT  236 (389)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  236 (389)
                      +|.....+...  ........++...|...+.  +|+--|-|.-+|.
T Consensus        83 dgvvqqqfdyn--dqsekefss~~cdptaqnv--vgtlcggv~q~dc  125 (1636)
T KOG3616|consen   83 DGVVQQQFDYN--DQSEKEFSSILCDPTAQNV--VGTLCGGVEQFDC  125 (1636)
T ss_pred             cCcchhhcccc--chhhhhccceecCchhhhh--hhhhccceeeehH
Confidence            33333333111  2233445566666644433  3444455666653

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=91.43  E-value=7.7  Score=34.67  Aligned_cols=31  Identities=19%  Similarity=0.344  Sum_probs=25.4

Q ss_pred             CCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          344 GRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       344 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      ..|.+++..+..+.|++...+|.|.+    |++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~----w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQV----WDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEE----EEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEE----EEEeC
Confidence            34999999998899999999999999    99974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.41  E-value=8.3  Score=32.94  Aligned_cols=110  Identities=14%  Similarity=0.097  Sum_probs=50.9

Q ss_pred             CCCeEEEEecC-----CcEEEEeCCCCCee---EEEe-eCCCcEEEEEECCCCcEEEEecC-----CCcEEEEeCCCCCC
Q 016458           78 ERNRIVSASQD-----GRLIVWNALTSQKT---HAIK-LPCAWVMTCAFSPTGQSVACGGL-----DSVCSIFNLNSPTD  143 (389)
Q Consensus        78 ~~~~l~~~~~d-----g~v~iw~~~~~~~~---~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~vw~~~~~~~  143 (389)
                      ++.+++.|+.+     ..+..+|+.+.+-.   ..+. .+...-...+..-++++.+.|+.     ...+..||+.+.. 
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~-  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQE-  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCC-
Confidence            44566667654     35666777665431   1111 11110111111225666677764     2357778877533 


Q ss_pred             CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC----eEEEEeCCCCeeE
Q 016458          144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ----TCVLWDITTGLRT  194 (389)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~  194 (389)
                          +.....+... ..........++ .+++.|+.++    .+.+||+.+.+-.
T Consensus       151 ----W~~~~~~p~~-~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~~~W~  199 (323)
T TIGR03548       151 ----WFELPDFPGE-PRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKKNQWQ  199 (323)
T ss_pred             ----eeECCCCCCC-CCCcceEEEECC-EEEEEcCCCCccccceEEEecCCCeeE
Confidence                2111111111 111112222333 6777777653    3568898876543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=91.32  E-value=9  Score=33.13  Aligned_cols=24  Identities=4%  Similarity=-0.049  Sum_probs=15.3

Q ss_pred             cEEEEeeCC-----------CeEEEEeCCCCeeEE
Q 016458          172 THLITSSGD-----------QTCVLWDITTGLRTS  195 (389)
Q Consensus       172 ~~l~~~~~d-----------g~i~iwd~~~~~~~~  195 (389)
                      .+.+.|+.+           ..+..||..+..-..
T Consensus        65 ~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~   99 (346)
T TIGR03547        65 KLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQK   99 (346)
T ss_pred             EEEEEeCCCCCCCCCcceecccEEEEECCCCEEec
Confidence            567777653           247778887765443

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.82  E-value=1.8  Score=40.22  Aligned_cols=73  Identities=15%  Similarity=0.059  Sum_probs=44.0

Q ss_pred             CCcEEEEeeCCCceEEEeCCC---CCcceeEE--ee--------------------eccceEEEEEec----CCCEEEEE
Q 016458          218 NSRMFVSGSCDSTARLWDTRV---ASRAVRTF--HG--------------------HEGDVNTVKFFP----DGNRFGTG  268 (389)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~--~~--------------------~~~~i~~~~~~~----~~~~l~~~  268 (389)
                      +...++.+..||.+.......   ........  ..                    .......+++++    +..++++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            455677777888888777654   11111110  00                    112345566665    77899999


Q ss_pred             ecCCeEEEEECCCCceeeEeec
Q 016458          269 SDDGTCRLFDIRTGHQLQVYYQ  290 (389)
Q Consensus       269 ~~dg~i~i~d~~~~~~~~~~~~  290 (389)
                      +.|+.+++||+.++.++.....
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEEET
T ss_pred             eCCCeEEEEECCCCeEEEEecc
Confidence            9999999999999998666533

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.79  E-value=12  Score=37.47  Aligned_cols=30  Identities=23%  Similarity=0.242  Sum_probs=26.2

Q ss_pred             cEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNS  140 (389)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~  140 (389)
                      ....++|+|....++.+...|.|++|-...
T Consensus        37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCcceeeccccceEEEEEecccEEEecccc
Confidence            456789999999999999999999997654

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=90.76  E-value=8.6  Score=31.94  Aligned_cols=98  Identities=13%  Similarity=0.218  Sum_probs=58.1

Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee------CCCeEEEEeCCCCeeEEEecCcccCC
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSG  204 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~  204 (389)
                      ..|++||..+.+       ....-.+-.+.|.++.|..+. ++++.|.      ....+..||..+......- ......
T Consensus        16 ~~lC~yd~~~~q-------W~~~g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~-~~~s~~   86 (281)
T PF12768_consen   16 PGLCLYDTDNSQ-------WSSPGNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLG-GGSSNS   86 (281)
T ss_pred             CEEEEEECCCCE-------eecCCCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCeeeecC-Cccccc
Confidence            458999988744       233333456889999998653 5666654      4567889999887543332 100012


Q ss_pred             CCCCeeEEEeeCCCCc-EEEEee-CCC--ceEEEeCC
Q 016458          205 HTADVLSVSISGSNSR-MFVSGS-CDS--TARLWDTR  237 (389)
Q Consensus       205 ~~~~v~~~~~~~~~~~-~l~~~~-~dg--~i~i~d~~  237 (389)
                      -.+++..+.+...+.. +.+.|. .+|  .|..||-.
T Consensus        87 ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs  123 (281)
T PF12768_consen   87 IPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS  123 (281)
T ss_pred             CCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence            3477888887554443 444443 233  45666544

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=90.65  E-value=2.1  Score=25.07  Aligned_cols=39  Identities=26%  Similarity=0.170  Sum_probs=31.9

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 016458            2 SSSVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAG   40 (389)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   40 (389)
                      |+.++-|++++.+++++..+|+.+-.-.++......+..
T Consensus        13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~pe~l~q   51 (59)
T PF01166_consen   13 REEVEVLKEQIAELEERNSQLEEENNLLKQNASPEQLAQ   51 (59)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            788999999999999999999999888887655444433

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=90.56  E-value=9.2  Score=31.98  Aligned_cols=89  Identities=20%  Similarity=0.213  Sum_probs=63.3

Q ss_pred             EEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC------------------
Q 016458          257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN------------------  318 (389)
Q Consensus       257 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------------  318 (389)
                      .|+ +|++.++-+..|.+.-+|..+|+..........      ...++|.  |.++++|-+.                  
T Consensus       209 RWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~------~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~  279 (335)
T TIGR03032       209 RWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGF------TRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDA  279 (335)
T ss_pred             cEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCC------Cccccee--CCEEEEEeccccCCCCcCCCchhhhhhh
Confidence            444 778888888999999999887766555433322      5778887  8888776431                  


Q ss_pred             --CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC
Q 016458          319 --GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS  356 (389)
Q Consensus       319 --g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (389)
                        .-|.+.|+.+|..+..+..  .+--..+.++++-|.-+
T Consensus       280 ~~CGv~vidl~tG~vv~~l~f--eg~v~EifdV~vLPg~r  317 (335)
T TIGR03032       280 LGCGVAVIDLNSGDVVHWLRF--EGVIEEIYDVAVLPGVR  317 (335)
T ss_pred             hcccEEEEECCCCCEEEEEEe--CCceeEEEEEEEecCCC
Confidence              2478889999998877743  44456788888888643

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=90.55  E-value=15  Score=34.41  Aligned_cols=165  Identities=10%  Similarity=0.051  Sum_probs=0.0

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeC---------CCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC-CCcEEEE
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNA---------LTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIF  136 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw  136 (389)
                      .+.|-.+.|.++++.+++...+|.|.+||.         .....-..-.....-|..........++++.+. ++.=..|
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc-ccCCCCCCeeEEEee
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE-FQSGHTADVLSVSIS  215 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~  215 (389)
                      .+-.-...............+........|.-+.+.+..-  .++.|.+|++...+....+... +.......+.++..-
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~  286 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP  286 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC


Q ss_pred             CCCCcEEEEeeCCCceEEEeC
Q 016458          216 GSNSRMFVSGSCDSTARLWDT  236 (389)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~  236 (389)
                      . .++.|++..  +.|++.|+
T Consensus       287 s-~nRvLLs~~--nkIyLld~  304 (670)
T PF10395_consen  287 S-PNRVLLSVN--NKIYLLDL  304 (670)
T ss_pred             C-CCeEEEEcC--CEEEEEee

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PRK00736 hypothetical protein; Provisional

Probab=90.53  E-value=1.3  Score=27.47  Aligned_cols=33  Identities=24%  Similarity=0.489  Sum_probs=21.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 016458            4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDV   36 (389)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   36 (389)
                      .+++|++-......++..|..+++...+++...
T Consensus        20 tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~   52 (68)
T PRK00736         20 TIEELSDQLAEQWKTVEQMRKKLDALTERFLSL   52 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456666666666777777777777776665543

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=90.32  E-value=20  Score=35.33  Aligned_cols=178  Identities=15%  Similarity=0.103  Sum_probs=95.5

Q ss_pred             eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc-EEEEee-----------CCCceEEEeCCCCCcceeEEeee
Q 016458          182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-MFVSGS-----------CDSTARLWDTRVASRAVRTFHGH  249 (389)
Q Consensus       182 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~  249 (389)
                      .|++.|..++..+..+.... ....-.+..+.|+..+.. +++++.           .+|.++.|++-..+..+..+...
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~-ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T  932 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQ-NEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT  932 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecC-CcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc
Confidence            37777777776666553221 122234556666653333 333332           24456777665444433333222


Q ss_pred             ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc-
Q 016458          250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-  328 (389)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-  328 (389)
                      +-+-.-.+..|...++++|- ...+++||+-..+.++.......   ...|+.+.+  .+..+++|...-.+.++..+. 
T Consensus       933 ~~~~~v~Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~~---p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen  933 EIPGPVGAICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKFI---PNRISSIQT--YGARIVVGDIQESVHFVRYRRE 1006 (1205)
T ss_pred             CCCccceEEeccCCEEEEec-ccEEEEeeCChHHHHhhhhhccC---ceEEEEEee--cceEEEEeeccceEEEEEEecC
Confidence            21222345667666666554 45899999987766655443321   123666666  466888887776776654433 


Q ss_pred             ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       329 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      .+.+..+..  ..-.-.|+++.+- |...++.|..=|.+.+
T Consensus      1007 ~n~l~~fad--D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 1007 DNQLIVFAD--DPVPRHVTALELL-DYDTVAGADRFGNIAV 1044 (1205)
T ss_pred             CCeEEEEeC--CCccceeeEEEEe-cCCceeeccccCcEEE
Confidence            223333311  2233356666654 3445777766677665

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=90.15  E-value=1.7  Score=37.78  Aligned_cols=169  Identities=14%  Similarity=0.007  Sum_probs=98.1

Q ss_pred             eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEE--Eee-CC---CcEE-EEEECCCCcEEEEecCCC
Q 016458           59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA--IKL-PC---AWVM-TCAFSPTGQSVACGGLDS  131 (389)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~--~~~-~~---~~v~-~~~~~~~~~~l~~~~~dg  131 (389)
                      .++.+..-...|..+-..|||+.|..-+. ..+.++++.+......  ... +.   ..|+ .+..-..|..++++..||
T Consensus       212 ~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG  290 (733)
T COG4590         212 IIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG  290 (733)
T ss_pred             hhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence            33345556667889999999998776655 5788888765432211  111 11   1122 112233566788889999


Q ss_pred             cEEEE-eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458          132 VCSIF-NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (389)
Q Consensus       132 ~i~vw-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  210 (389)
                      .|.-| |......  ......+.++-...++..+.--.+ .+-+++-+..|++..+.-...+....      ......+.
T Consensus       291 ~vsQWFdvr~~~~--p~l~h~R~f~l~pa~~~~l~pe~~-rkgF~~l~~~G~L~~f~st~~~~lL~------~~~~~~~~  361 (733)
T COG4590         291 LVSQWFDVRRDGQ--PHLNHIRNFKLAPAEVQFLLPETN-RKGFYSLYRNGTLQSFYSTSEKLLLF------ERAYQAPQ  361 (733)
T ss_pred             ceeeeeeeecCCC--CcceeeeccccCcccceeeccccc-cceEEEEcCCCceeeeecccCcceeh------hhhhcCcc
Confidence            98877 4433221  122233333333344443332222 35577778888888877554443332      22334677


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEeCCCC
Q 016458          211 SVSISGSNSRMFVSGSCDSTARLWDTRVA  239 (389)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  239 (389)
                      -++++| +++++++- ..|.++++.+++.
T Consensus       362 ~~~~Sp-~~~~Ll~e-~~gki~~~~l~Nr  388 (733)
T COG4590         362 LVAMSP-NQAYLLSE-DQGKIRLAQLENR  388 (733)
T ss_pred             eeeeCc-ccchheee-cCCceEEEEecCC
Confidence            788999 66666653 4678999988765

>PLN02153 epithiospecifier protein

Probab=90.14  E-value=11  Score=32.40  Aligned_cols=61  Identities=18%  Similarity=0.030  Sum_probs=30.7

Q ss_pred             CCCeEEEEecC-------CcEEEEeCCCCCeeEEEee---CCC---cEEEEEECCCCcEEEEecCC-----CcEEEEeCC
Q 016458           78 ERNRIVSASQD-------GRLIVWNALTSQKTHAIKL---PCA---WVMTCAFSPTGQSVACGGLD-----SVCSIFNLN  139 (389)
Q Consensus        78 ~~~~l~~~~~d-------g~v~iw~~~~~~~~~~~~~---~~~---~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~  139 (389)
                      ++.+++.|+.+       ..+.+||..+.+-......   +..   ....+.+  ++++++.|+.+     ..+.+||+.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  109 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV  109 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence            34566666653       2577888766532221111   110   1112222  56677777753     247778876


Q ss_pred             C
Q 016458          140 S  140 (389)
Q Consensus       140 ~  140 (389)
                      +
T Consensus       110 t  110 (341)
T PLN02153        110 K  110 (341)
T ss_pred             C
Confidence            5

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=90.08  E-value=11  Score=31.94  Aligned_cols=242  Identities=12%  Similarity=0.056  Sum_probs=112.0

Q ss_pred             CCeEEEEecCCcEEEEeCCC--CCeeEEEeeCCCcEEEEEECCCCcEEEEe-cCCCcEEEEeCCCCCCC----C-CC---
Q 016458           79 RNRIVSASQDGRLIVWNALT--SQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDK----D-GN---  147 (389)
Q Consensus        79 ~~~l~~~~~dg~v~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~----~-~~---  147 (389)
                      +++|+.|+.+| +.+.+...  .+....  .+...|+++...+..+.|++- +....++++++..-...    . ..   
T Consensus        13 ~~~lL~GTe~G-ly~~~~~~~~~~~~kl--~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~   89 (302)
T smart00036       13 GKWLLVGTEEG-LYVLNISDQPGTLEKL--IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI   89 (302)
T ss_pred             CcEEEEEeCCc-eEEEEcccCCCCeEEe--cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence            36899999998 55555544  222222  344579999998877766554 44455999998542210    0 00   


Q ss_pred             CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEE-EecC--cccCCCCCCeeEEEeeCC-CCcEEE
Q 016458          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS-VFGG--EFQSGHTADVLSVSISGS-NSRMFV  223 (389)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~--~~~~~~~~~v~~~~~~~~-~~~~l~  223 (389)
                      .......-+|................++++....+|.++......... .+..  ........++..+..++. ....+.
T Consensus        90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc  169 (302)
T smart00036       90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC  169 (302)
T ss_pred             cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence            000011223333233333332222334555556677776543321110 0100  000111223333333331 244566


Q ss_pred             EeeCCCceEEEeCCC--C--Ccc-eeE-Eeeec-cceEEEEEecCCCEEEEEecCCeEEEEECCCCceee--EeeccCCC
Q 016458          224 SGSCDSTARLWDTRV--A--SRA-VRT-FHGHE-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ--VYYQQHGE  294 (389)
Q Consensus       224 ~~~~dg~i~i~d~~~--~--~~~-~~~-~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~  294 (389)
                      .|+..+...++++..  .  ... +.. ..... .++.... -+++.+|++-  |....+.|....+...  .+...   
T Consensus       170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~-l~~~e~Llc~--~~~~v~Vn~~G~~~~r~~~l~w~---  243 (302)
T smart00036      170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQ-VPRDEFLLCY--DEFGVFVNLYGKRRSRNPILHWE---  243 (302)
T ss_pred             EEEcCCCCeEEEEeecccccccccccccccccccCceEEEE-ECCCeEEEEE--CcEEEEEeCCCCccccceEEEcC---
Confidence            666543344454432  1  000 000 00111 2333333 3344444433  3344555544212111  11111   


Q ss_pred             CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458          295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (389)
                         ....++++.  ..+|++-..+ .|.|+++.+++.+.++
T Consensus       244 ---~~p~~~~~~--~pyll~~~~~-~ievr~l~~~~l~q~i  278 (302)
T smart00036      244 ---FMPESFAYH--SPYLLAFHDN-GIEIRSIKTGELLQEL  278 (302)
T ss_pred             ---CcccEEEEE--CCEEEEEcCC-cEEEEECCCCceEEEE
Confidence               124667765  4677666544 5999999999888877

Unpublished observations.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	389
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-170
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		6e-84
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		8e-84
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		8e-84
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-83
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-83
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-74
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-19
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-18
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		6e-18
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-14
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-14
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-14
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-14
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-14
2h9l_A	329	Wdr5delta23 Length = 329		5e-14
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-14
2g99_A	308	Structural Basis For The Specific Recognition Of Me		5e-14
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-14
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-14
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-14
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		5e-14
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-14
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-14
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-14
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		7e-14
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		9e-14
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		4e-13
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		5e-13
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-12
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-12
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-11
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-12
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-11
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		6e-12
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		6e-12
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-10
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-10
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-10
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-10
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-10
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-10
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		6e-09
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-09
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		7e-04
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-09
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-04
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-09
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		7e-04
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-09
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-09
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		3e-09
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		7e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		7e-09
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-08
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-08
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		5e-08
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		6e-08
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		6e-08
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-07
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		6e-07
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		7e-07
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		1e-06
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-06
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		1e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		2e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		3e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		4e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		7e-05
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		1e-04
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		4e-04

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score =  593 bits (1529), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 288/369 (78%), Positives = 329/369 (89%), Gaps = 2/369 (0%)
Query: 3   SSVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT 62
           +SV+ELKE+HAAA  +VNSLRERL+Q+RQ LLD DV  YS++QGR  VSF PTDLVCCRT
Sbjct: 2   ASVAELKEKHAAATASVNSLRERLRQRRQTLLDTDVEKYSKAQGRTAVSFNPTDLVCCRT 61
Query: 63  LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122
           LQGH+GKVYSLDWT E+N IVSASQDGRLIVWNALTSQKTHAIKL C WVM CAF+P GQ
Sbjct: 62  LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121
Query: 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182
           SVACGGLDS CSIFNL+S  D+DGN+PVSR+L+GHKGY S CQYVPD++T LIT SGDQT
Sbjct: 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA 242
           CVLWD+TTG R S+FG EF SGHTADVLS+SI+  N+ MF+SGSCD+T RLWD R+ SRA
Sbjct: 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241
Query: 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ--HGENEIPHV 300
           VRT+HGHEGD+N+VKFFPDG RFGTGSDDGTCRLFD+RTGHQLQVY ++    +NE+P V
Sbjct: 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIV 301
Query: 301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360
           TS+AFSISGRLLFAGYSNGDCYVWDTLLA++VLNLG+LQNSHEGRI+CLGLS+DGSALCT
Sbjct: 302 TSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCT 361
Query: 361 GSWDTNLKV 369
           GSWD NLK+
Sbjct: 362 GSWDKNLKI 370

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score =  307 bits (787), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 160/357 (44%), Positives = 238/357 (66%), Gaps = 22/357 (6%)
Query: 16  IETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPT---DLVCCRTLQGHAGKVYS 72
           +  ++ LR+  +Q + Q+ D   A    +  +   +  P     +   RTL+GH  K+Y+
Sbjct: 1   MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 73  LDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132
           + W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++
Sbjct: 61  MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 192
           CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG 
Sbjct: 121 CSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQ 175
Query: 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 252
           +T+       +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE D
Sbjct: 176 QTTT-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESD 228
Query: 253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312
           +N + FFP+GN F TGSDD TCRLFD+R   +L  Y     +N I  +TS++FS SGRLL
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLL 285
Query: 313 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
            AGY + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LK+
Sbjct: 286 LAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score =  307 bits (786), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 160/354 (45%), Positives = 237/354 (66%), Gaps = 22/354 (6%)
Query: 19  VNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPT---DLVCCRTLQGHAGKVYSLDW 75
           ++ LR+  +Q + Q+ D   A    +  +   +  P     +   RTL+GH  K+Y++ W
Sbjct: 4   LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 76  TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135
            ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI
Sbjct: 64  GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
           +NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG +T+
Sbjct: 124 YNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTT 178
Query: 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255
                  +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE D+N 
Sbjct: 179 T-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINA 231
Query: 256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315
           + FFP+GN F TGSDD TCRLFD+R   +L  Y     +N I  +TS++FS SGRLL AG
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAG 288
Query: 316 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
           Y + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LK+
Sbjct: 289 YDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score =  307 bits (786), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 160/354 (45%), Positives = 237/354 (66%), Gaps = 22/354 (6%)
Query: 19  VNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPT---DLVCCRTLQGHAGKVYSLDW 75
           ++ LR+  +Q + Q+ D   A    +  +   +  P     +   RTL+GH  K+Y++ W
Sbjct: 15  LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 74
Query: 76  TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135
            ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI
Sbjct: 75  GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 134
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
           +NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG +T+
Sbjct: 135 YNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTT 189
Query: 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255
                  +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE D+N 
Sbjct: 190 T-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINA 242
Query: 256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315
           + FFP+GN F TGSDD TCRLFD+R   +L  Y     +N I  +TS++FS SGRLL AG
Sbjct: 243 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAG 299
Query: 316 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
           Y + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LK+
Sbjct: 300 YDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 349

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score =  306 bits (784), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 159/357 (44%), Positives = 238/357 (66%), Gaps = 22/357 (6%)
Query: 16  IETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPT---DLVCCRTLQGHAGKVYS 72
           +  ++ LR+  +Q + Q+ D   A    +  +   +  P     +   RTL+GH  K+Y+
Sbjct: 1   MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 73  LDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132
           + W ++   ++SASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++
Sbjct: 61  MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 192
           CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG 
Sbjct: 121 CSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQ 175
Query: 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 252
           +T+       +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE D
Sbjct: 176 QTTT-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESD 228
Query: 253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312
           +N + FFP+GN F TGSDD TCRLFD+R   +L  Y     +N I  +TS++FS SGRLL
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLL 285
Query: 313 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
            AGY + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LK+
Sbjct: 286 LAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score =  305 bits (782), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 159/354 (44%), Positives = 237/354 (66%), Gaps = 22/354 (6%)
Query: 19  VNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPT---DLVCCRTLQGHAGKVYSLDW 75
           ++ LR+  +Q + Q+ D   A    +  +   +  P     +   RTL+GH  K+Y++ W
Sbjct: 4   LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 76  TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135
            ++   ++SASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI
Sbjct: 64  GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
           +NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG +T+
Sbjct: 124 YNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTT 178
Query: 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255
                  +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE D+N 
Sbjct: 179 T-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINA 231
Query: 256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315
           + FFP+GN F TGSDD TCRLFD+R   +L  Y     +N I  +TS++FS SGRLL AG
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAG 288
Query: 316 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
           Y + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LK+
Sbjct: 289 YDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score =  276 bits (706), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 145/362 (40%), Positives = 222/362 (61%), Gaps = 22/362 (6%)
Query: 10  ERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGK 69
           E  A+      SL+ +L+++R +L DV++            + G   +   RTL+GH  K
Sbjct: 11  ETLASLKSEAESLKGKLEEERAKLHDVEL----HQVAERVEALGQFVMKTRRTLKGHGNK 66
Query: 70  VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL 129
           V  +DW  ++ RIVS+SQDG++IVW++ T+ K HA+ +PC WVM CA++P+G ++ACGGL
Sbjct: 67  VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL 126
Query: 130 DSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188
           D+ CS++ L    DK+ N+   +  ++ H  Y+S C +  + D  ++T+SGD TC LWD+
Sbjct: 127 DNKCSVYPLT--FDKNENMAAKKKSVAMHTNYLSACSFT-NSDMQILTASGDGTCALWDV 183
Query: 189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNS-RMFVSGSCDSTARLWDTRVASRAVRTFH 247
            +G     F      GH ADVL + ++ S +   FVSG CD  A +WD R + + V+ F 
Sbjct: 184 ESGQLLQSF-----HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR-SGQCVQAFE 237
Query: 248 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307
            HE DVN+V+++P G+ F +GSDD TCRL+D+R   ++ +Y +   E+ I   +S+ FS+
Sbjct: 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK---ESIIFGASSVDFSL 294
Query: 308 SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL 367
           SGRLLFAGY++    VWD L    V    S+   HE R++ L +S DG+A C+GSWD  L
Sbjct: 295 SGRLLFAGYNDYTINVWDVLKGSRV----SILFGHENRVSTLRVSPDGTAFCSGSWDHTL 350
Query: 368 KV 369
           +V
Sbjct: 351 RV 352

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 137/314 (43%), Gaps = 36/314 (11%)
Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
             +TL GH+  V+ + ++ +   I SAS D  + +WN    Q    +    + V   AFS
Sbjct: 295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQHLQTLTGHSSSVWGVAFS 353
Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
           P GQ++A    D    ++N N      G L   + L+GH   V    + PD  T + ++S
Sbjct: 354 PDGQTIASASDDKTVKLWNRN------GQLL--QTLTGHSSSVRGVAFSPDGQT-IASAS 404
Query: 179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
            D+T  LW+    L  ++      +GH++ V  V+ S  + +   S S D T +LW+   
Sbjct: 405 DDKTVKLWNRNGQLLQTL------TGHSSSVWGVAFS-PDDQTIASASDDKTVKLWNRN- 456
Query: 239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298
             + ++T  GH   V  V F PDG    + SDD T +L++ R G  LQ            
Sbjct: 457 -GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS---- 510
Query: 299 HVTSIAFSISGRLLFAGYSNGDCYVWD---TLLAKVVLNLGSLQNSHEGRITCLGLSADG 355
            V  +AFS  G+ + +   +    +W+    LL  +          H   +  +  S DG
Sbjct: 511 -VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--------GHSSSVWGVAFSPDG 561
Query: 356 SALCTGSWDTNLKV 369
             + + S D  +K+
Sbjct: 562 QTIASASSDKTVKL 575

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 116/267 (43%), Gaps = 18/267 (6%)
Query: 61  RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
           R L+GH+  V  +  ++  N  VSAS D  L +WN    Q  +        V++ AFSP 
Sbjct: 61  RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG- 179
            + +  GG D+   ++N+       G    +     H  +VSC ++ P  D  +I S G 
Sbjct: 121 NRQIVSGGRDNALRVWNVK------GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGW 174
Query: 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           D    +WD+ TG   +        GHT  V SV++S   S +  S   D  ARLWD    
Sbjct: 175 DNLVKVWDLATGRLVTDL-----KGHTNYVTSVTVSPDGS-LCASSDKDGVARLWDLTKG 228
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--GENEI 297
                   G    +N + F P+       ++ G  R+FD+     +     +H   +  +
Sbjct: 229 EALSEMAAG--APINQICFSPNRYWMCAATEKGI-RIFDLENKDIIVELAPEHQGSKKIV 285
Query: 298 PHVTSIAFSISGRLLFAGYSNGDCYVW 324
           P   SIA+S  G  L++GY++    VW
Sbjct: 286 PECVSIAWSADGSTLYSGYTDNVIRVW 312

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 22/223 (9%)
Query: 57  LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA 116
           L C R L GH G V  L +  +   I++ S D  + VW+  T +  + +   C  V+   
Sbjct: 163 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR 220
Query: 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176
           F+  G  V C   D   +++++ SPTD    + + R+L GH+  V+   +   +D ++++
Sbjct: 221 FN-NGMMVTCSK-DRSIAVWDMASPTD----ITLRRVLVGHRAAVNVVDF---DDKYIVS 271
Query: 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236
           +SGD+T  +W+ +T         EF          ++      R+ VSGS D+T RLWD 
Sbjct: 272 ASGDRTIKVWNTSTC--------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 323
Query: 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279
              +  +R   GHE  V  ++F  D  R  +G+ DG  +++D+
Sbjct: 324 ECGA-CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL 363

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 103/243 (42%), Gaps = 55/243 (22%)
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
           Q +  G  D+   I++ N+       L   R+L+GH G V C QY   ++  +IT S D 
Sbjct: 144 QKIVSGLRDNTIKIWDKNT-------LECKRILTGHTGSVLCLQY---DERVIITGSSDS 193
Query: 182 TCVLWDITTG--LRT------SVFGGEFQSGHTA-----------DVLS----------- 211
           T  +WD+ TG  L T      +V    F +G              D+ S           
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV 253
Query: 212 -----VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 266
                V++   + +  VS S D T ++W+T      VRT +GH+  +  +++        
Sbjct: 254 GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQY--RDRLVV 310
Query: 267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326
           +GS D T RL+DI  G  L+V     G  E+  V  I F    + + +G  +G   VWD 
Sbjct: 311 SGSSDNTIRLWDIECGACLRVL---EGHEEL--VRCIRF--DNKRIVSGAYDGKIKVWDL 363
Query: 327 LLA 329
           + A
Sbjct: 364 VAA 366

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 113/275 (41%), Gaps = 18/275 (6%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 132
Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
           +  +WD+ TG+            H+  V +V  +   S + VS S D   R+WDT     
Sbjct: 133 SVRIWDVKTGMCLKTL-----PAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQC 186
Query: 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 301
                      V+ VKF P+G      + D T +L+D   G  L+ Y     E    +  
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---YCI 243
Query: 302 SIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
              FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKL 278

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 84  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 135
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 136 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 187
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 244
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 132
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 133 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 184
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 241
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 132
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 133 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 184
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 241
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 78  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 129
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 130 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 181
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 238
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 35  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 95  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 146
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 147 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 198
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 199 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 255
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 256 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 292

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 84  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 135
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 136 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 187
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 244
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 14  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 74  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 125
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 126 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 177
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 178 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 234
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 235 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 271

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 42  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 102 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 153
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 154 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 205
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 206 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 262
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 263 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 299

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 23  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 83  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 134
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 135 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 186
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 187 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 243
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 244 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 280

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 78  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 129
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 130 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 181
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 238
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 40  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 100 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 151
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 152 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 203
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 204 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 260
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 261 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 297

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 19  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 79  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 130
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 131 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 182
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 183 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 239
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 240 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 276

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 17  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 77  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 128
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 129 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 180
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 181 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 237
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 238 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 274

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 84  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 135
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 136 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 187
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 244
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + ++S D  + +W A   +    I      +   A+S   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 132
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 133 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 184
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 241
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 112/275 (40%), Gaps = 18/275 (6%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 132
Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
           +  +WD+ TG+            H+  V +V  +   S + VS S D   R+WDT     
Sbjct: 133 SVRIWDVKTGMCLKTL-----PAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQC 186
Query: 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 301
                      V+ VKF P+G      + D   +L+D   G  L+ Y     E    +  
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEK---YCI 243
Query: 302 SIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
              FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKL 278

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 140/369 (37%), Gaps = 114/369 (30%)
Query: 62  TLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
           TL+GH G V  +  T +  + I+SAS+D  +I+W     +  + I               
Sbjct: 33  TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIP-------------- 78
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
                                          R L GH  +VS    +  +    ++ S D
Sbjct: 79  ------------------------------QRALRGHSHFVSDV-VISSDGQFALSGSWD 107
Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT---- 236
            T  LWD+TTG  T  F      GHT DVLSV+ S S++R  VSGS D T +LW+T    
Sbjct: 108 GTLRLWDLTTGTTTRRF-----VGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVC 161
Query: 237 ---------------------------------------RVASRAVRTFH-GHEGDVNTV 256
                                                   +A+  ++T H GH G +NTV
Sbjct: 162 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 221
Query: 257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316
              PDG+   +G  DG   L+D+  G  L   Y   G + I    ++ FS   R      
Sbjct: 222 TVSPDGSLCASGGKDGQAMLWDLNEGKHL---YTLDGGDII---NALCFS-PNRYWLCAA 274
Query: 317 SNGDCYVWDTLLAKVVLN------LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVN 370
           +     +WD L  K++++      + +   +   + T L  SADG  L  G  D  ++V 
Sbjct: 275 TGPSIKIWD-LEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV- 332
Query: 371 LGFWRVQEG 379
              W+V  G
Sbjct: 333 ---WQVTIG 338

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 140/369 (37%), Gaps = 114/369 (30%)
Query: 62  TLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
           TL+GH G V  +  T +  + I+SAS+D  +I+W     +  + I               
Sbjct: 10  TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIP-------------- 55
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
                                          R L GH  +VS    +  +    ++ S D
Sbjct: 56  ------------------------------QRALRGHSHFVSDV-VISSDGQFALSGSWD 84
Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT---- 236
            T  LWD+TTG  T  F      GHT DVLSV+ S S++R  VSGS D T +LW+T    
Sbjct: 85  GTLRLWDLTTGTTTRRF-----VGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVC 138
Query: 237 ---------------------------------------RVASRAVRTFH-GHEGDVNTV 256
                                                   +A+  ++T H GH G +NTV
Sbjct: 139 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 198
Query: 257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316
              PDG+   +G  DG   L+D+  G  L   Y   G + I    ++ FS   R      
Sbjct: 199 TVSPDGSLCASGGKDGQAMLWDLNEGKHL---YTLDGGDII---NALCFS-PNRYWLCAA 251
Query: 317 SNGDCYVWDTLLAKVVLN------LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVN 370
           +     +WD L  K++++      + +   +   + T L  SADG  L  G  D  ++V 
Sbjct: 252 TGPSIKIWD-LEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV- 309
Query: 371 LGFWRVQEG 379
              W+V  G
Sbjct: 310 ---WQVTIG 315

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 124/292 (42%), Gaps = 47/292 (16%)
Query: 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE 170
           ++ +  FSP G+ +A G  D +  I+++        N  +  +L GH+  +    Y P  
Sbjct: 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIE-------NRKIVMILQGHEQDIYSLDYFPSG 177
Query: 171 DTHLITSSGDQTCVLWDITTG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227
           D  L++ SGD+T  +WD+ TG   L  S+  G         V +V++S  + +   +GS 
Sbjct: 178 D-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDG---------VTTVAVSPGDGKYIAAGSL 227
Query: 228 DSTARLWDTRVASRAVR------TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281
           D   R+WD+       R      +  GH+  V +V F  DG    +GS D + +L++++ 
Sbjct: 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Query: 282 GHQL-----------QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330
            +             +V Y  H +     V S+A + +   + +G  +     WD     
Sbjct: 288 ANNKSDSKTPNSGTCEVTYIGHKD----FVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343
Query: 331 VVLNLGSLQNSHEGRITCLG--LSADGSALCTGSWDTNLKVNLGFWRVQEGA 380
            +L L   +NS        G  L  + +   TGS D   ++    W+ ++ A
Sbjct: 344 PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI----WKYKKIA 391

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 94/222 (42%), Gaps = 32/222 (14%)
Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           +G  G++Y L+W +++    +     RL+V        T A+   C       FS  GQ 
Sbjct: 594 EGDTGRLY-LEWINKK----TIKNLSRLVV-----RPHTDAVYHAC-------FSQDGQR 636
Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           +A  G D    +F   +     G   +   +  H+  V CC +  D D+++ T S D+  
Sbjct: 637 IASCGADKTLQVFKAET-----GEKLLD--IKAHEDEVLCCAFSSD-DSYIATCSADKKV 688
Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISG-SNSRMFVSGSCDSTARLWDTRVASRA 242
            +WD  TG     +       H+  V     +  SN  +  +GS D   +LWD       
Sbjct: 689 KIWDSATGKLVHTY-----DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-QKEC 742
Query: 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284
             T  GH   VN  +F PD     + S DGT RL+D+R+ ++
Sbjct: 743 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 784

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 133/339 (39%), Gaps = 56/339 (16%)
Query: 59   CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW------- 111
            C  T+ GH   V    ++ +   + S S DG L +W+  ++ +  +I +   +       
Sbjct: 742  CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP 801
Query: 112  ------VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165
                  V  C++S  G  +     + V  +F++++         ++ + +GH   +  C 
Sbjct: 802  EDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSG------LLAEIHTGHHSTIQYCD 854
Query: 166  YVPDEDTHLITSSGDQTCV-LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224
            + P +  HL   +  Q CV LW+I + L+ +        GH + V  V  S   S  F++
Sbjct: 855  FSPYD--HLAVIALSQYCVELWNIDSRLKVADC-----RGHLSWVHGVMFSPDGSS-FLT 906
Query: 225  GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284
             S D T R+W+T+   +        E DV     F +        D+   R   +  G  
Sbjct: 907  ASDDQTIRVWETKKVCKNSAIVLKQEIDV----VFQENETMVLAVDN--IRGLQLIAGKT 960
Query: 285  LQVYYQQHGENEI----PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 340
             Q+ Y    +       PH+  +AF         G  +G   + + L    V + G    
Sbjct: 961  GQIDYLPEAQVSCCCLSPHLEYVAF---------GDEDGAIKIIE-LPNNRVFSSGV--- 1007
Query: 341  SHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379
             H+  +  +  +ADG  L + S D+ ++V    W  Q G
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQV----WNWQTG 1042

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 94/222 (42%), Gaps = 32/222 (14%)
Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           +G  G++Y L+W +++    +     RL+V        T A+   C       FS  GQ 
Sbjct: 587 EGDTGRLY-LEWINKK----TIKNLSRLVV-----RPHTDAVYHAC-------FSQDGQR 629
Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           +A  G D    +F   +     G   +   +  H+  V CC +  D D+++ T S D+  
Sbjct: 630 IASCGADKTLQVFKAET-----GEKLLD--IKAHEDEVLCCAFSSD-DSYIATCSADKKV 681
Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISG-SNSRMFVSGSCDSTARLWDTRVASRA 242
            +WD  TG     +       H+  V     +  SN  +  +GS D   +LWD       
Sbjct: 682 KIWDSATGKLVHTY-----DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-QKEC 735
Query: 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284
             T  GH   VN  +F PD     + S DGT RL+D+R+ ++
Sbjct: 736 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 133/339 (39%), Gaps = 56/339 (16%)
Query: 59   CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW------- 111
            C  T+ GH   V    ++ +   + S S DG L +W+  ++ +  +I +   +       
Sbjct: 735  CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP 794
Query: 112  ------VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165
                  V  C++S  G  +     + V  +F++++         ++ + +GH   +  C 
Sbjct: 795  EDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSG------LLAEIHTGHHSTIQYCD 847
Query: 166  YVPDEDTHLITSSGDQTCV-LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224
            + P +  HL   +  Q CV LW+I + L+ +        GH + V  V  S   S  F++
Sbjct: 848  FSPYD--HLAVIALSQYCVELWNIDSRLKVADC-----RGHLSWVHGVMFSPDGSS-FLT 899
Query: 225  GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284
             S D T R+W+T+   +        E DV     F +        D+   R   +  G  
Sbjct: 900  ASDDQTIRVWETKKVCKNSAIVLKQEIDV----VFQENETMVLAVDN--IRGLQLIAGKT 953
Query: 285  LQVYYQQHGENEI----PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 340
             Q+ Y    +       PH+  +AF         G  +G   + + L    V + G    
Sbjct: 954  GQIDYLPEAQVSCCCLSPHLEYVAF---------GDEDGAIKIIE-LPNNRVFSSGV--- 1000
Query: 341  SHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379
             H+  +  +  +ADG  L + S D+ ++V    W  Q G
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQV----WNWQTG 1035

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 150/396 (37%), Gaps = 62/396 (15%)
Query: 6   SELKERHAAAIET-----------VNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGP 54
            EL +++A  +E            V  L  +L + +++      +G    Q R P  + P
Sbjct: 41  EELDKKYAGLLEKKWTSVIRLQKKVMELESKLNEAKEEF----TSGGPLGQKRDPKEWIP 96
Query: 55  TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMT 114
                   L GH   V  + +    + +VSAS+D  + VW+  T      +K     V  
Sbjct: 97  RPPEKY-ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 155
Query: 115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 174
            +F  +G+ +A    D    +++              R + GH   VS    +P+ D H+
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWDFQ-------GFECIRTMHGHDHNVSSVSIMPNGD-HI 207
Query: 175 ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 234
           +++S D+T  +W++ TG     F     +GH   V  V     +  +  S S D T R+W
Sbjct: 208 VSASRDKTIKMWEVQTGYCVKTF-----TGHREWVRMVR-PNQDGTLIASCSNDQTVRVW 261
Query: 235 DTRVASRAVRT-FHGHEGDVNTVKFFPD--------------------GNRFGTGSDDGT 273
              VA++  +     H   V  + + P+                    G    +GS D T
Sbjct: 262 --VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 333
            +++D+ TG  L              V  + F   G+ + +   +    VWD    + + 
Sbjct: 320 IKMWDVSTGMCLMTLVGHDN-----WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 374
Query: 334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
            L    N+HE  +T L        + TGS D  +KV
Sbjct: 375 TL----NAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 129/317 (40%), Gaps = 35/317 (11%)
Query: 39  AGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYS-LDWTSERNRIVSASQDGRLIVWNAL 97
           + Y R Q R   ++   +L   + L+GH   V + L +    NRIVS S D  L VW+A+
Sbjct: 91  SAYIR-QHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG--NRIVSGSDDNTLKVWSAV 147
Query: 98  TSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH 157
           T +    +      V +         +  G  D    ++N  +             L GH
Sbjct: 148 TGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETG-------ECIHTLYGH 198
Query: 158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217
              V C       +  +++ S D T  +WDI TG    V       GH A V  V   G 
Sbjct: 199 TSTVRCMHL---HEKRVVSGSRDATLRVWDIETGQCLHVL-----MGHVAAVRCVQYDG- 249
Query: 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 277
             R  VSG+ D   ++WD    +  + T  GH   V +++F  DG    +GS D + R++
Sbjct: 250 --RRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVW 304
Query: 278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 337
           D+ TG+ +              +TS    +   +L +G ++    +WD    + +  L  
Sbjct: 305 DVETGNCIHTLTGHQS------LTS-GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 357
Query: 338 LQNSHEGRITCLGLSAD 354
             N H+  +TCL  + +
Sbjct: 358 -PNKHQSAVTCLQFNKN 373

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 114/280 (40%), Gaps = 21/280 (7%)
Query: 61  RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
           +T    + +V  +D+      +++    GR+ +WN  T  +  +I++    V    F   
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
              +  G  D    +FN N+     G   V      H  Y+      P +  ++++ S D
Sbjct: 67  KNWIIVGSDDFRIRVFNYNT-----GEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDD 118
Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240
            T  LW+             F+ GH   V+ V+ +  +   F SG  D T ++W    ++
Sbjct: 119 LTVKLWNWENNW---ALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 241 RAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298
                  G E  VN V ++  PD     T SDD T +++D +T   +        E  + 
Sbjct: 175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----EGHMS 229
Query: 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLG 336
           +V+   F  +  ++ +G  +G   +W++   KV   LN+G
Sbjct: 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 114/280 (40%), Gaps = 21/280 (7%)
Query: 61  RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
           +T    + +V  +D+      +++    GR+ +WN  T  +  +I++    V    F   
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
              +  G  D    +FN N+     G   V      H  Y+      P +  ++++ S D
Sbjct: 67  KNWIIVGSDDFRIRVFNYNT-----GEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDD 118
Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240
            T  LW+             F+ GH   V+ V+ +  +   F SG  D T ++W    ++
Sbjct: 119 LTVKLWNWENNW---ALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 241 RAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298
                  G E  VN V ++  PD     T SDD T +++D +T   +        E  + 
Sbjct: 175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----EGHMS 229
Query: 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLG 336
           +V+   F  +  ++ +G  +G   +W++   KV   LN+G
Sbjct: 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 114/284 (40%), Gaps = 21/284 (7%)
Query: 57  LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA 116
           L   +T    + +V  +D+      +++    GR+ +WN  T  +  +I++    V    
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGK 62
Query: 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176
           F      +  G  D    +FN N+     G   V      H  Y+      P +  ++++
Sbjct: 63  FIARKNWIIVGSDDFRIRVFNYNT-----GEKVVD--FEAHPDYIRSIAVHPTK-PYVLS 114
Query: 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236
            S D T  LW+            +   GH   V+ V+ +  +   F SG  D T ++W  
Sbjct: 115 GSDDLTVKLWNWENNWALE----QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 237 RVASRAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294
             ++       G E  VN V ++  PD     T SDD T +++D +T   +        E
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----E 225
Query: 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLG 336
             + +V+   F  +  ++ +G  +G   +W++   KV   LN+G
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 138/336 (41%), Gaps = 42/336 (12%)
Query: 57  LVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKLP-----CA 110
           LV   T++ H   V ++    +  + IVSAS+D  +I+W      K + +          
Sbjct: 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH 431
Query: 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE 170
           +V     S  GQ    G  D    +++L +          +R   GH   V    +  D 
Sbjct: 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS-------TRRFVGHTKDVLSVAFSLD- 483
Query: 171 DTHLITSSGDQTCVLWDITTGLRTSVF-GGEFQSGHTADVLSVSISGSNSR-MFVSGSCD 228
           +  ++++S D+T  LW+     + ++  GGE   GH   V  V  S +  +   VS S D
Sbjct: 484 NRQIVSASRDRTIKLWNTLGECKYTISEGGE---GHRDWVSCVRFSPNTLQPTIVSASWD 540
Query: 229 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288
            T ++W+     +   T  GH G V+TV   PDG+   +G  DG   L+D+  G +L   
Sbjct: 541 KTVKVWNLS-NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL--- 596
Query: 289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI-- 346
           Y     N + H  ++ FS +   L A   +G   +WD     +V +L     +   +   
Sbjct: 597 YSLEA-NSVIH--ALCFSPNRYWLCAATEHG-IKIWDLESKSIVEDLKVDLKAEAEKADN 652
Query: 347 -------------TCLGLSADGSALCTGSWDTNLKV 369
                        T L  SADGS L +G  D  ++V
Sbjct: 653 SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 113/280 (40%), Gaps = 21/280 (7%)
Query: 61  RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
           +T    + +V  +D+      +++    GR+ +WN  T  +  +I++    V    F   
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
              +  G  D    +FN N+     G   V      H  Y+      P +  ++++ S D
Sbjct: 67  KNWIIVGSDDFRIRVFNYNT-----GEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDD 118
Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240
            T  LW+            +   GH   V+ V+ +  +   F SG  D T ++W    ++
Sbjct: 119 LTVKLWNWENNWALE----QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 241 RAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298
                  G E  VN V ++  PD     T SDD T +++D +T   +        E  + 
Sbjct: 175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----EGHMS 229
Query: 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLG 336
           +V+   F  +  ++ +G  +G   +W++   KV   LN+G
Sbjct: 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 119/281 (42%), Gaps = 27/281 (9%)
Query: 58  VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF 117
           V  R+ +GH+  V     T++    +SAS D  L +W+  T +         + VM+   
Sbjct: 50  VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI 109
Query: 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP----DEDTH 173
                 +  G  D    ++ +               L GH  +VS  + VP    D+D+ 
Sbjct: 110 DKKASMIISGSRDKTIKVWTIKGQ--------CLATLLGHNDWVSQVRVVPNEKADDDSV 161
Query: 174 LITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
            I S+G D+    W++      + F      GH +++ +++ S  +  +  S   D    
Sbjct: 162 TIISAGNDKMVKAWNLNQFQIEADF-----IGHNSNINTLTAS-PDGTLIASAGKDGEIM 215
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGH---QLQVY 288
           LW+   A +A+ T    + +V ++ F P  NR+   +   T  ++F +   +    L+  
Sbjct: 216 LWNL-AAKKAMYTLSAQD-EVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPE 271
Query: 289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329
           +  + +   PH  S+A+S  G+ LFAGY++    VW  + A
Sbjct: 272 FAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 312

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 9/125 (7%)
Query: 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLW----DTRVASRAVRTFHGHEGDVNTVKFF 259
           GH   V S++ S     + +S S D T   W    D +     VR+F GH   V      
Sbjct: 9   GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT 68
Query: 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319
            DG    + S D T RL+D+ TG   Q +     +     V S+       ++ +G  + 
Sbjct: 69  ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD-----VMSVDIDKKASMIISGSRDK 123
Query: 320 DCYVW 324
              VW
Sbjct: 124 TIKVW 128

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 119/281 (42%), Gaps = 27/281 (9%)
Query: 58  VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF 117
           V  R+ +GH+  V     T++    +SAS D  L +W+  T +         + VM+   
Sbjct: 56  VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI 115
Query: 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP----DEDTH 173
                 +  G  D    ++ +               L GH  +VS  + VP    D+D+ 
Sbjct: 116 DKKASMIISGSRDKTIKVWTIKGQ--------CLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 174 LITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
            I S+G D+    W++      + F      GH +++ +++ S  +  +  S   D    
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADF-----IGHNSNINTLTAS-PDGTLIASAGKDGEIM 221
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGH---QLQVY 288
           LW+   A +A+ T    + +V ++ F P  NR+   +   T  ++F +   +    L+  
Sbjct: 222 LWNL-AAKKAMYTLSAQD-EVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPE 277
Query: 289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329
           +  + +   PH  S+A+S  G+ LFAGY++    VW  + A
Sbjct: 278 FAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 9/125 (7%)
Query: 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLW----DTRVASRAVRTFHGHEGDVNTVKFF 259
           GH   V S++ S     + +S S D T   W    D +     VR+F GH   V      
Sbjct: 15  GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT 74
Query: 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319
            DG    + S D T RL+D+ TG   Q +     +     V S+       ++ +G  + 
Sbjct: 75  ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD-----VMSVDIDKKASMIISGSRDK 129
Query: 320 DCYVW 324
              VW
Sbjct: 130 TIKVW 134

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 119/281 (42%), Gaps = 27/281 (9%)
Query: 58  VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF 117
           V  R+ +GH+  V     T++    +SAS D  L +W+  T +         + VM+   
Sbjct: 56  VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI 115
Query: 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP----DEDTH 173
                 +  G  D    ++ +               L GH  +VS  + VP    D+D+ 
Sbjct: 116 DKKASMIISGSRDKTIKVWTIKGQ--------CLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 174 LITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
            I S+G D+    W++      + F      GH +++ +++ S  +  +  S   D    
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADF-----IGHNSNINTLTAS-PDGTLIASAGKDGEIM 221
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGH---QLQVY 288
           LW+   A +A+ T    + +V ++ F P  NR+   +   T  ++F +   +    L+  
Sbjct: 222 LWNL-AAKKAMYTLSAQD-EVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPE 277
Query: 289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329
           +  + +   PH  S+A+S  G+ LFAGY++    VW  + A
Sbjct: 278 FAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 9/125 (7%)
Query: 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLW----DTRVASRAVRTFHGHEGDVNTVKFF 259
           GH   V S++ S     + +S S D T   W    D +     VR+F GH   V      
Sbjct: 15  GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT 74
Query: 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319
            DG    + S D T RL+D+ TG   Q +     +     V S+       ++ +G  + 
Sbjct: 75  ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD-----VMSVDIDKKASMIISGSRDK 129
Query: 320 DCYVW 324
              VW
Sbjct: 130 TIKVW 134

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 123/366 (33%), Gaps = 147/366 (40%)
Query: 57  LVCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115
           LV   TL+GH G V SL  ++ + N ++SAS+D  LI W           KL        
Sbjct: 7   LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISW-----------KL-------- 47
Query: 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175
               TG                     D+   +PV R   GH   V  C    D   + +
Sbjct: 48  ----TGD--------------------DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYAL 81
Query: 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW- 234
           ++S D+T  LWD+ TG     F      GH +DV+SV I    S M +SGS D T ++W 
Sbjct: 82  SASWDKTLRLWDVATGETYQRF-----VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWT 135
Query: 235 ---------------------------------------DTRVASRAVRTFH------GH 249
                                                  D  V +  +  F       GH
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
Query: 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI------------ 297
             ++NT+   PDG    +   DG   L+++     +   Y    ++E+            
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM---YTLSAQDEVFSLAFSPNRYWL 252
Query: 298 ----------------------------------PHVTSIAFSISGRLLFAGYSNGDCYV 323
                                             PH  S+A+S  G+ LFAGY++    V
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312
Query: 324 WDTLLA 329
           W  + A
Sbjct: 313 WQVMTA 318

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 101/231 (43%), Gaps = 21/231 (9%)
Query: 153 MLSGHKGYVSCC-----QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS--GH 205
           +L GH  +V+       Q   ++   LI+ S D+T ++W +    +   FG   ++  GH
Sbjct: 16  ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 265
              V  +++S  N    +S S D T RLWD R  +   R F GH+ +V +V F PD  + 
Sbjct: 76  NHFVSDLALSQENC-FAISSSWDKTLRLWDLRTGTTYKR-FVGHQSEVYSVAFSPDNRQI 133
Query: 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV--TSIAFSISGRLLFAGYS-----N 318
            +   +   +L++I    +     +++  + +  V  + I  S +    FA Y      +
Sbjct: 134 LSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD 193
Query: 319 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
           G   VW+T        +     +HE  +  L +S +G  + TG  D  L +
Sbjct: 194 GRLKVWNT-----NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLI 239

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 117/276 (42%), Gaps = 27/276 (9%)
Query: 58  VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF 117
           V  R+ +GH+  V     T++    +SAS D  L +W+  T +         + VM+   
Sbjct: 56  VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI 115
Query: 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP----DEDTH 173
                 +  G  D    ++ +               L GH  +VS  + VP    D+D+ 
Sbjct: 116 DKKASMIISGSRDKTIKVWTIKGQ--------CLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 174 LITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
            I S+G D+    W++      + F      GH +++ +++ S  +  +  S   D    
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADF-----IGHNSNINTLTAS-PDGTLIASAGKDGEIM 221
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGH---QLQVY 288
           LW+   A +A+ T    + +V ++ F P  NR+   +   T  ++F +   +    L+  
Sbjct: 222 LWNL-AAKKAMYTLSAQD-EVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPE 277
Query: 289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324
           +  + +   PH  S+A+S  G+ LFAGY++    VW
Sbjct: 278 FAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 9/125 (7%)
Query: 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLW----DTRVASRAVRTFHGHEGDVNTVKFF 259
           GH   V S++ S     + +S S D T   W    D +     VR+F GH   V      
Sbjct: 15  GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT 74
Query: 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319
            DG    + S D T RL+D+ TG   Q +     +     V S+       ++ +G  + 
Sbjct: 75  ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD-----VMSVDIDKKASMIISGSRDK 129
Query: 320 DCYVW 324
              VW
Sbjct: 130 TIKVW 134

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 23/242 (9%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           +L+GH   V S+D +       S+S D  + +W+    ++  +I        T AFSP  
Sbjct: 75  SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
           Q +A G      +IF + S   +         L     ++    Y PD   +L + + D 
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKE-------YSLDTRGKFILSIAYSPD-GKYLASGAIDG 186
Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
              ++DI TG            GH   + S++ S  +S++ V+ S D   +++D + A+ 
Sbjct: 187 IINIFDIATGKLLHTL-----EGHAMPIRSLTFS-PDSQLLVTASDDGYIKIYDVQHANL 240
Query: 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT--------GHQLQVYYQQHG 293
           A  T  GH   V  V F PD   F + S D + +++D+ T         HQ QV+  ++ 
Sbjct: 241 A-GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN 299
Query: 294 EN 295
            N
Sbjct: 300 GN 301

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 12/175 (6%)
Query: 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS--VF 197
           S  D  G       L GH+       + P+   HL+++S D T  LWDI+   +    V 
Sbjct: 159 SKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVD 218
Query: 198 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV--ASRAVRTFHGHEGDVNT 255
                +GHTA V  VS    +  +F S + D    +WDTR    S+   +   H  +VN 
Sbjct: 219 AKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNC 278
Query: 256 VKFFPDGNR-FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI------PHVTSI 303
           + F P       TGS D T  L+D+R   +L+++  +  ++EI      PH  +I
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNL-KLKLHSFESHKDEIFQVQWSPHNETI 332

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 116/281 (41%), Gaps = 27/281 (9%)
Query: 58  VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF 117
           V  R+ +GH+  V     T++    +SAS D  L +W+  T +         + V +   
Sbjct: 56  VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDI 115
Query: 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP----DEDTH 173
                 +  G  D    ++ +               L GH  +VS  + VP    D+D+ 
Sbjct: 116 DKKASXIISGSRDKTIKVWTIKGQ--------CLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 174 LITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
            I S+G D+    W++      + F      GH +++ +++ S  +  +  S   D    
Sbjct: 168 TIISAGNDKXVKAWNLNQFQIEADF-----IGHNSNINTLTAS-PDGTLIASAGKDGEIX 221
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGH---QLQVY 288
           LW+   A +A  T    + +V ++ F P  NR+   +   T  ++F +   +    L+  
Sbjct: 222 LWNL-AAKKAXYTLSAQD-EVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPE 277
Query: 289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329
           +  + +   PH  S+A+S  G+ LFAGY++    VW    A
Sbjct: 278 FAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTA 318

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 22/189 (11%)
Query: 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLS 211
           L GH+       + P+ + +L+++S D T  LWDI  T      +      +GHTA V  
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 212 VSISGSNSRMFVSGSCDSTARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGNR-FGTG 268
           V+    +  +F S + D    +WDTR    S+   T   H  +VN + F P       TG
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEI------PHVTSIAFSISGRLLFAGYSNGDCY 322
           S D T  L+D+R   +L+++  +  ++EI      PH  +I        L +  ++   +
Sbjct: 299 SADKTVALWDLRNL-KLKLHSFESHKDEIFQVQWSPHNETI--------LASSGTDRRLH 349
Query: 323 VWDTLLAKV 331
           VWD  L+K+
Sbjct: 350 VWD--LSKI 356

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 22/189 (11%)
Query: 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLS 211
           L GH+       + P+ + +L+++S D T  LWDI  T      +      +GHTA V  
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 212 VSISGSNSRMFVSGSCDSTARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGNR-FGTG 268
           V+    +  +F S + D    +WDTR    S+   T   H  +VN + F P       TG
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEI------PHVTSIAFSISGRLLFAGYSNGDCY 322
           S D T  L+D+R   +L+++  +  ++EI      PH  +I        L +  ++   +
Sbjct: 297 SADKTVALWDLRNL-KLKLHSFESHKDEIFQVQWSPHNETI--------LASSGTDRRLH 347
Query: 323 VWDTLLAKV 331
           VWD  L+K+
Sbjct: 348 VWD--LSKI 354

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 12/164 (7%)
Query: 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLS 211
           L GH+       + P+ + +L+++S D T  LWDI  T      +      +GHTA V  
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 212 VSISGSNSRMFVSGSCDSTARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGNR-FGTG 268
           V+    +  +F S + D    +WDTR    S+   T   H  +VN + F P       TG
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEI------PHVTSIAFS 306
           S D T  L+D+R   +L+++  +  ++EI      PH  +I  S
Sbjct: 301 SADKTVALWDLRNL-KLKLHSFESHKDEIFQVQWSPHNETILAS 343

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 173 HLITSSGDQTCVLWDITTGLRTS--VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230
           HL+++S D T  LWDI  G +    V      +GH+A V  V+    +  +F S + D  
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 231 ARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGNR-FGTGSDDGTCRLFDIRTGHQLQV 287
             +WDTR    S+       H  +VN + F P       TGS D T  L+D+R   +L++
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL-KLKL 312
Query: 288 YYQQHGENEI------PHVTSIAFS 306
           +  +  ++EI      PH  +I  S
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILAS 337

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 173 HLITSSGDQTCVLWDITTGLRTS--VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230
           HL+++S D T  LWDI  G +    V      +GH+A V  V+    +  +F S + D  
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 231 ARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGNR-FGTGSDDGTCRLFDIRTGHQLQV 287
             +WDTR    S+       H  +VN + F P       TGS D T  L+D+R   +L++
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL-KLKL 312
Query: 288 YYQQHGENEI------PHVTSI 303
           +  +  ++EI      PH  +I
Sbjct: 313 HTFESHKDEIFQVHWSPHNETI 334

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 95/240 (39%), Gaps = 25/240 (10%)
Query: 115 CAFSPTGQSVAC---GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED 171
           CA +P   ++ C   GG      +  L      D N+P   ++ GH   V    + P  D
Sbjct: 40  CAVNPKFMALICEASGG--GAFLVLPLGKTGRVDKNVP---LVCGHTAPVLDIAWCPHND 94
Query: 172 THLITSSGDQTCVLWDITTG-----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226
             + + S D T ++W+I  G     LR  V   E   GHT  V  V+   +   + +S  
Sbjct: 95  NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE---GHTKRVGIVAWHPTAQNVLLSAG 151
Query: 227 CDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284
           CD+   +WD    + AV T     H   + +V +  DG    T   D   R+ + R G  
Sbjct: 152 CDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG-- 208
Query: 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQNS 341
             V  ++   +E        F   G++L  G+   S     +WDT   +  L+L  L  S
Sbjct: 209 -TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS 267

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 123/334 (36%), Gaps = 39/334 (11%)
Query: 49  PVSFGPTDLVCCRTLQGHAGKVYSLDW--------TSERNRIVSASQDGRLIVWN-ALTS 99
           PV F P D +    +  HA ++ +L+          S   R V     G + VW+ +   
Sbjct: 25  PVPF-PPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPG 83
Query: 100 QKTHAIKLPCA----WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS 155
            K+   +L C     ++ +C   P G ++  GG  S  SI++L +PT +     +   L+
Sbjct: 84  NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-----IKAELT 138
Query: 156 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215
                       PD      +   D    +WD    L       +FQ GHT     + IS
Sbjct: 139 SSAPACYALAISPDSKV-CFSCCSDGNIAVWD----LHNQTLVRQFQ-GHTDGASCIDIS 192
Query: 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 275
              ++++ +G  D+T R WD R   +  +  H     + ++ + P G     G +     
Sbjct: 193 NDGTKLW-TGGLDNTVRSWDLREGRQLQQ--HDFTSQIFSLGYCPTGEWLAVGMESSNVE 249
Query: 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335
           +  +    + Q++  +        V S+ F+  G+   +   +     W T     +   
Sbjct: 250 VLHVNKPDKYQLHLHESC------VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--- 300
Query: 336 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
              Q+     +    +S D   + TGS D    V
Sbjct: 301 --FQSKESSSVLSCDISVDDKYIVTGSGDKKATV 332

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 18/227 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL+GH   V  +    + +++ S S+DG + +W+         +     ++ +  +    
Sbjct: 13  TLKGHDQDVRDVV-AVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEK 71
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
           + +  GG D+  +   L + + +D   P+  ++ GH+G V    +   +D  +I+ S D+
Sbjct: 72  ELLLFGGKDTXINGVPLFATSGED---PLYTLI-GHQGNVCSLSF---QDGVVISGSWDK 124
Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
           T  +W      +        Q+ H A V    +   +   F++ S D T +LW      +
Sbjct: 125 TAKVW------KEGSLVYNLQA-HNASVWDAKVVSFSENKFLTASADKTIKLWQN---DK 174
Query: 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288
            ++TF G   DV       D   F + S+DG  +L D  TG  L+ Y
Sbjct: 175 VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTY 221

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 67/167 (40%), Gaps = 10/167 (5%)
Query: 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED 171
           V   A+SP G  +A    D+   I+  N       +      L GH+  V    + P  +
Sbjct: 64  VRKVAWSPCGNYLASASFDATTCIWKKNQ-----DDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 231
             L T S D++  +W++              + HT DV  V +   +  +  S S D T 
Sbjct: 119 L-LATCSRDKSVWVWEVDEEDEYECVS--VLNSHTQDVKHV-VWHPSQELLASASYDDTV 174
Query: 232 RLWDTRVASRAV-RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 277
           +L+           T  GHE  V ++ F P G R  + SDD T R++
Sbjct: 175 KLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 135/313 (43%), Gaps = 36/313 (11%)
Query: 73  LDWTSERNRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS 131
           LDW++    +V+ + +  + VWNA + S    A      +V +  +S  G  ++ G  + 
Sbjct: 99  LDWSNLN--VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG 156
Query: 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 191
           +  I+++ S T         R ++GH+  V C  +    + H++ SSG ++  +      
Sbjct: 157 LVDIYDVESQTKL-------RTMAGHQARVGCLSW----NRHVL-SSGSRSGAIHHHDVR 204
Query: 192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG 251
           +     G     GH+++V  ++   S+     SG  D+  ++WD R +S    T   H  
Sbjct: 205 IANHQIGT--LQGHSSEVCGLAWR-SDGLQLASGGNDNVVQIWDAR-SSIPKFTKTNHNA 260
Query: 252 DVNTVKFFP-DGNRFGTG--SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS 308
            V  V + P   N   TG  + D     ++  TG ++         +    VTS+ +S  
Sbjct: 261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV------DAGSQVTSLIWSPH 314
Query: 309 GRLLFA--GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366
            + + +  G+ + +  +W    + +   +     +H+ R+    LS DG  L T + D N
Sbjct: 315 SKEIMSTHGFPDNNLSIWSYSSSGLTKQVD--IPAHDTRVLYSALSPDGRILSTAASDEN 372
Query: 367 LKVNLGFWRVQEG 379
           LK    FWRV +G
Sbjct: 373 LK----FWRVYDG 381

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 85/228 (37%), Gaps = 41/228 (17%)
Query: 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213
           LSGH G V   +Y       L++ S D+T  +WDI  G  T VF G   +    D+    
Sbjct: 158 LSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI---- 211
Query: 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 273
           +   N +  V+GS D+T  +W  ++   +    HG E D   V   P+ N +  G   G 
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVW--KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269
Query: 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 333
                  +GH                         G ++ +G  +    VWD    K + 
Sbjct: 270 MASVRTVSGH-------------------------GNIVVSGSYDNTLIVWDVAQMKCLY 304
Query: 334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL 381
            L    + H  RI       +     + S DT +++    W ++ G L
Sbjct: 305 IL----SGHTDRIYSTIYDHERKRCISASMDTTIRI----WDLENGEL 344

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 20/207 (9%)
Query: 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-----LRTSVFGG 199
           D N+P   ++ GH   V    + P  D  + + S D T ++W+I  G     LR  V   
Sbjct: 71  DKNVP---LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127
Query: 200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVK 257
           E   GHT  V  V+   +   + +S   D+   +WD    + AV T     H   + +V 
Sbjct: 128 E---GHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVD 183
Query: 258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY- 316
           +  DG    T   D   R+ + R G    V  ++   +E        F   G++L  G+ 
Sbjct: 184 WSRDGALICTSCRDKRVRVIEPRKG---TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240
Query: 317 --SNGDCYVWDTLLAKVVLNLGSLQNS 341
             S     +WDT   +  L+L  L  S
Sbjct: 241 RMSERQVALWDTKHLEEPLSLQELDTS 267

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 131/336 (38%), Gaps = 55/336 (16%)
Query: 55  TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQD----GRLIVWNALTSQKTHAIKLPCA 110
           T  +   T+   +G V  + W SE  RI +  +     G + +++  TS     +     
Sbjct: 91  TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN--LTGQAR 148
Query: 111 WVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD 169
            + +  F P+    +  G  D+  +IF    P  K            H  +V   +Y PD
Sbjct: 149 AMNSVDFKPSRPFRIISGSDDNTVAIFE--GPPFK-----FKSTFGEHTKFVHSVRYNPD 201
Query: 170 EDTHLITSSGDQTCVLWDITTGLRTSVFGGEF--QSGHTADVLSVSISGSNSRMFVSGSC 227
             +   ++ GD T VL++   G +T VF  +      H+  V  ++ S   +++  S S 
Sbjct: 202 -GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI-ASASA 259
Query: 228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG--------------TGSDDGT 273
           D T ++W+  VA+  V             K  P G R                + S +G 
Sbjct: 260 DKTIKIWN--VATLKVE------------KTIPVGTRIEDQQLGIIWTKQALVSISANGF 305
Query: 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 333
               +   G   QV Y   G N+   +T+++ S  G+ LF+  + G    WD       +
Sbjct: 306 INFVNPELGSIDQVRY---GHNKA--ITALSSSADGKTLFSADAEGHINSWDISTG---I 357
Query: 334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
           +     + H   IT +  ++ G  L T SWD +LKV
Sbjct: 358 SNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKV 392

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 85/228 (37%), Gaps = 41/228 (17%)
Query: 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213
           LSGH G V   +Y       L++ S D+T  +WDI  G  T VF G   +    D+    
Sbjct: 158 LSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI---- 211
Query: 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 273
           +   N +  V+GS D+T  +W  ++   +    HG E D   V   P+ N +  G   G 
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVW--KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269
Query: 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 333
                  +GH                         G ++ +G  +    VWD    K + 
Sbjct: 270 XASVRTVSGH-------------------------GNIVVSGSYDNTLIVWDVAQXKCLY 304
Query: 334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL 381
            L    + H  RI       +     + S DT +++    W ++ G L
Sbjct: 305 IL----SGHTDRIYSTIYDHERKRCISASXDTTIRI----WDLENGEL 344

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 13/138 (9%)
Query: 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219
           Y+S   ++  E  +L   +      LWD+    R         + H+A V S+S    NS
Sbjct: 160 YISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRNM-----TSHSARVGSLSW---NS 210
Query: 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279
            +  SGS        D RVA   V T  GH  +V  +++ PDG    +G +D    ++  
Sbjct: 211 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 270
Query: 280 RTGH----QLQVYYQQHG 293
             G      LQ + Q  G
Sbjct: 271 APGEGGWVPLQTFTQHQG 288

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 13/138 (9%)
Query: 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219
           Y+S   ++  E  +L   +      LWD+    R         + H+A V S+S    NS
Sbjct: 149 YISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRNM-----TSHSARVGSLSW---NS 199
Query: 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279
            +  SGS        D RVA   V T  GH  +V  +++ PDG    +G +D    ++  
Sbjct: 200 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259
Query: 280 RTGH----QLQVYYQQHG 293
             G      LQ + Q  G
Sbjct: 260 APGEGGWVPLQTFTQHQG 277

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 13/138 (9%)
Query: 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219
           Y+S   ++  E  +L   +      LWD+    R         + H+A V S+S    NS
Sbjct: 69  YISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRL-----RNMTSHSARVGSLSW---NS 119
Query: 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279
            +  SGS        D RVA   V T  GH  +V  +++ PDG    +G +D    ++  
Sbjct: 120 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179
Query: 280 RTGH----QLQVYYQQHG 293
             G      LQ + Q  G
Sbjct: 180 APGEGGWVPLQTFTQHQG 197

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 25/226 (11%)
Query: 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213
           L+GH+  ++  +Y  + D  L + S D +  +W    G R          GHT  + S+ 
Sbjct: 28  LTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLGTL-----DGHTGTIWSID 81
Query: 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-- 271
           +    ++  V+GS D + +LWD     + V T+      V  V+F P GN F    D+  
Sbjct: 82  VD-CFTKYCVTGSADYSIKLWDVS-NGQCVATWKS-PVPVKRVEFSPCGNYFLAILDNVM 138
Query: 272 ---GTCRLFDIR---TGHQLQVYYQQHGENEIPH-----VTSIAFSISGRLLFAGYSNGD 320
              G+  +++I      H+L    ++     I H      T   +S  G+ + AG+ +G 
Sbjct: 139 KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK 198
Query: 321 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366
              +D       ++   L   HE  I+ +  S D +   T S DTN
Sbjct: 199 ISKYDVSNNYEYVDSIDL---HEKSISDMQFSPDLTYFITSSRDTN 241

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 96/263 (36%), Gaps = 54/263 (20%)
Query: 157 HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE---------------- 200
           H+  V   Q+ P +     +SS D+T  +WD  T     VF  E                
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 201 -----------------------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237
                                     GH  ++L+VS S     +  + S DS  +LWD R
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC------RLFDIRTGHQLQVYYQQ 291
            AS  + T   H G  +  +     N    G  +G C       L  + T ++++++   
Sbjct: 218 RASGCLITLDQHNGKKS--QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS 275
Query: 292 HGENEIPHVTSIAFSISGRLLFA---GYSNGDCYV-WDTLLAKVVLNLG---SLQNSHEG 344
           +GEN + +   +  +    L F    G S+   +V + + +A   +  G   ++   H  
Sbjct: 276 NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK 335
Query: 345 RITCLGLSADGSALCTGSWDTNL 367
            + C    ++   L +GS D N+
Sbjct: 336 TVDCCVFQSNFQELYSGSRDCNI 358

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	389
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.98
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.98
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.97
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.97
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.97
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.96
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.96
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.95
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.95
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.95
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.95
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.93
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.93
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.9
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.9
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.89
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.88
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.88
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.87
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.87
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.87
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.86
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.86
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.86
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.86
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.85
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.83
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.83
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.83
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.83
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.83
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.81
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.81
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.81
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.8
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.8
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.8
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.8
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.8
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.8
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.79
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.78
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.77
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.77
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.77
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.76
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.76
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.74
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.74
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.74
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.74
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.73
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.73
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.73
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.7
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.68
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.67
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.66
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.66
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.66
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.65
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.64
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.62
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.61
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.61
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.6
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.59
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.58
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.57
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.56
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.56
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.55
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.54
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.53
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.53
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.51
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.5
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.49
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.49
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.49
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.46
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.44
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.44
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.37
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.34
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.32
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.31
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.31
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.29
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.26
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.25
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.25
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.24
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.23
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.22
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.22
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.22
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.21
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.19
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.19
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.19
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.16
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.15
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.14
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.14
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.13
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.12
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.12
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.1
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.07
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.07
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.07
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.06
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.02
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.02
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.0
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.99
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.99
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.98
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.97
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.96
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.94
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.91
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.88
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.88
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.88
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.81
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.8
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.79
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.76
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.76
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.73
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.73
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.73
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.7
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.7
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.7
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.67
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.64
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.61
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.59
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.58
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.51
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.5
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.49
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.45
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.44
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.4
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.39
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.34
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.33
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.28
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.25
3ott_A	758	Two-component system sensor histidine kinase; beta	98.24
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.23
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.22
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.17
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.15
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.09
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.09
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.08
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.05
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.04
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.03
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.0
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.87
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.86
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.79
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.78
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.76
3ott_A	758	Two-component system sensor histidine kinase; beta	97.74
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.72
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.64
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.61
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.59
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.5
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.49
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.49
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.37
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.35
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.32
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.3
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.29
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.23
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.15
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.11
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.03
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.85
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.8
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.73
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.48
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	96.26
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.04
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.95
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.5
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.45
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.44
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	95.22
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.28
1bb1_B	36	Designed, thermostable heterotrimeric coiled coil;	91.94
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.9
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	91.9
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	91.89
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	90.35
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	89.98
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	89.88
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	89.61
3ra3_B	28	P2F; coiled coil domain, fiber, KIH interactions,	89.12
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	89.09
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	89.04
3m48_A	33	General control protein GCN4; leucine zipper, synt	88.91
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	88.84
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	88.69
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	88.43
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	88.29
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	87.31
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	87.13
1fmh_A	33	General control protein GCN4; coiled coil, leucine	87.08
2pnv_A	43	Small conductance calcium-activated potassium chan	86.73
3ljm_A	31	Coil Ser L9C; de novo design, three stranded coile	86.35
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	86.29
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	86.22
3ra3_A	28	P1C; coiled coil domain, fiber, KIH interactions,	84.81
2bni_A	34	General control protein GCN4; four helix bundle, a	84.47
1uo4_A	34	General control protein GCN4; four helix bundle, c	84.17
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	84.17
2pnv_A	43	Small conductance calcium-activated potassium chan	83.91
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	83.75
3azd_A	37	Short alpha-tropomyosin, transcription factor GCN;	83.66
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	83.62
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	80.86
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	80.86
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	80.73
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	80.06

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.9e-63  Score=429.02  Aligned_cols=373  Identities=77%  Similarity=1.314  Sum_probs=334.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEE
Q 016458            4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIV   83 (389)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~   83 (389)
                      +++|+++++..++.+++++++++++.++.+.+.+...+.......+..|.|.++.+.++|.+|.++|++++|+|++++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~   82 (380)
T 3iz6_a            3 SVAELKEKHAAATASVNSLRERLRQRRQTLLDTDVEKYSKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIV   82 (380)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHGGGCCSCHHHHGGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHhhhcccccccccccceeEEeecccccccEEEEEEEcCCCCEEE
Confidence            45678888888888899999999988888877777777777777788899999999999999999999999999999999


Q ss_pred             EEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEE
Q 016458           84 SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC  163 (389)
Q Consensus        84 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~  163 (389)
                      +|+.||+|++||..+++....+..|...|.+++|+|++++|++|+.|+.|++|++..........+....+.+|.+.|.+
T Consensus        83 s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~  162 (380)
T 3iz6_a           83 SASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASS  162 (380)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCC
T ss_pred             EEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEE
Confidence            99999999999999999999999999999999999999999999999999999998765555556667788999999999


Q ss_pred             EEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcce
Q 016458          164 CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV  243 (389)
Q Consensus       164 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  243 (389)
                      +.|.|+++..|++|+.|++|++||+.++..+..+......+|...|.++++++.++++|++|+.|+.|++||++.....+
T Consensus       163 ~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~  242 (380)
T 3iz6_a          163 CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV  242 (380)
T ss_dssp             CBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCC
T ss_pred             EEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcce
Confidence            99999876789999999999999999999988876555568899999999998788999999999999999998665788


Q ss_pred             eEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC--CCCCCCeeEEEeCCCCCEEEEEecCCcE
Q 016458          244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--ENEIPHVTSIAFSISGRLLFAGYSNGDC  321 (389)
Q Consensus       244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i  321 (389)
                      ..+.+|...|.+++|+|++++|++++.||.|++||++++..+..+.....  ......+++++|+|+|++|++|+.||.|
T Consensus       243 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i  322 (380)
T 3iz6_a          243 RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC  322 (380)
T ss_dssp             EEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCE
T ss_pred             EEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCE
Confidence            89999999999999999999999999999999999999988877654332  1223358999999999999999999999


Q ss_pred             EEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458          322 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       322 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~  380 (389)
                      ++||+..++....+.....+|.+.|++++|+|+|.+|++|+.||.|++    |++..++
T Consensus       323 ~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~i----W~~~~~~  377 (380)
T 3iz6_a          323 YVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI----WAFSGHR  377 (380)
T ss_dssp             EEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEE----EECCSSS
T ss_pred             EEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEE----EecCCCc
Confidence            999999998888776555789999999999999999999999999999    9998764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.8e-57  Score=387.52  Aligned_cols=338  Identities=47%  Similarity=0.943  Sum_probs=291.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCc
Q 016458           11 RHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGR   90 (389)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~   90 (389)
                      +..++++|+++|++++++.++++..............    ......+..++|.+|.++|++++|+|++++|++|+.||+
T Consensus         3 e~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~   78 (340)
T 1got_B            3 ELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDP----VGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGK   78 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCC----CCCCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchhHHhhcCCCc----cccccchhheeecCCCCceEEEEECCCCCEEEEEeCCCc
Confidence            4445666666666666666665554333222211111    122356778899999999999999999999999999999


Q ss_pred             EEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCC
Q 016458           91 LIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE  170 (389)
Q Consensus        91 v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  170 (389)
                      |++||..+++.+..+..|...|.+++|+|++++|++|+.|+.|++|++....   ........+.+|.+.|.++.|++++
T Consensus        79 v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~~  155 (340)
T 1got_B           79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE---GNVRVSRELAGHTGYLSCCRFLDDN  155 (340)
T ss_dssp             EEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS---BSCEEEEEEECCSSCEEEEEEEETT
T ss_pred             EEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC---CcceeEEEecCCCccEEEEEECCCC
Confidence            9999999999999999999999999999999999999999999999998743   2233566788999999999999975


Q ss_pred             CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec
Q 016458          171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE  250 (389)
Q Consensus       171 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  250 (389)
                        .+++++.|+.|++||+.++.....+     ..|...|.+++|+| ++.++++|+.|+.|++||+++. .....+.+|.
T Consensus       156 --~l~s~s~d~~i~~wd~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~-~~~~~~~~h~  226 (340)
T 1got_B          156 --QIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREG-MCRQTFTGHE  226 (340)
T ss_dssp             --EEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC-SEEEEECCCS
T ss_pred             --cEEEEECCCcEEEEECCCCcEEEEE-----cCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCC-eeEEEEcCCc
Confidence              5999999999999999999999888     78999999999999 8889999999999999999987 7788899999


Q ss_pred             cceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce
Q 016458          251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK  330 (389)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (389)
                      ..|.+++|+|++++|++++.||.|++||+++++.+..+..   ......|++++|+|+|++|++|+.||.|++||+.+++
T Consensus       227 ~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~  303 (340)
T 1got_B          227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc---CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence            9999999999999999999999999999998877766543   2223359999999999999999999999999999999


Q ss_pred             EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458          331 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR  375 (389)
Q Consensus       331 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~  375 (389)
                      ....+    .+|.+.|.+++|+|+|.+|++|+.||.|+|    ||
T Consensus       304 ~~~~~----~~h~~~v~~~~~s~dg~~l~s~s~D~~i~i----Wd  340 (340)
T 1got_B          304 RAGVL----AGHDNRVSCLGVTDDGMAVATGSWDSFLKI----WN  340 (340)
T ss_dssp             EEEEE----ECCSSCEEEEEECTTSSCEEEEETTSCEEE----EC
T ss_pred             EeeEe----ecCCCcEEEEEEcCCCCEEEEEcCCccEEe----cC
Confidence            98888    789999999999999999999999999999    96

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.3e-56  Score=381.84  Aligned_cols=345  Identities=41%  Similarity=0.833  Sum_probs=301.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEec
Q 016458            8 LKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ   87 (389)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~   87 (389)
                      .++++..++.|.+.|+.++++.+....+..+..........    ........++|.+|.++|++++|+|++++|++|+.
T Consensus         9 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~   84 (354)
T 2pbi_B            9 ENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEAL----GQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQ   84 (354)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHTTTSCCC----CCCCCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHhccCCccc----cccccEEEEEecCCCCeEEEEEECCCCCEEEEEeC
Confidence            45677888899999999998888777776655544333222    23445778899999999999999999999999999


Q ss_pred             CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEe
Q 016458           88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV  167 (389)
Q Consensus        88 dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (389)
                      ||+|++||..+++....+..|...|.+++|+|++.++++|+.|+.+++|++...... ........+..|...|.++.|+
T Consensus        85 Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~  163 (354)
T 2pbi_B           85 DGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE-NMAAKKKSVAMHTNYLSACSFT  163 (354)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC-CSGGGCEEEEECSSCEEEEEEC
T ss_pred             CCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc-cccccceeeeccCCcEEEEEEe
Confidence            999999999999999999999999999999999999999999999999999764321 1223456677899999999999


Q ss_pred             eCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC-CCcEEEEeeCCCceEEEeCCCCCcceeEE
Q 016458          168 PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTF  246 (389)
Q Consensus       168 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  246 (389)
                      |++ ..+++++.|++|++||+++++.+..+     .+|...|.+++++|. ++++|++|+.||.|++||++++ ..+..+
T Consensus       164 ~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~-~~~~~~  236 (354)
T 2pbi_B          164 NSD-MQILTASGDGTCALWDVESGQLLQSF-----HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-QCVQAF  236 (354)
T ss_dssp             SSS-SEEEEEETTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC-CEEEEE
T ss_pred             CCC-CEEEEEeCCCcEEEEeCCCCeEEEEE-----cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-cEEEEe
Confidence            997 68999999999999999999999888     789999999999884 4589999999999999999987 788889


Q ss_pred             eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458          247 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       247 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (389)
                      .+|...|.+++|+|++.+|++++.|+.|++||++.+.....+...   .....+.+++|+|+|++|++|+.|+.|++||+
T Consensus       237 ~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~---~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~  313 (354)
T 2pbi_B          237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE---SIIFGASSVDFSLSGRLLFAGYNDYTINVWDV  313 (354)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT---TCCSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC---CcccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence            999999999999999999999999999999999988766555432   22335899999999999999999999999999


Q ss_pred             ccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458          327 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR  375 (389)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~  375 (389)
                      .+++.+..+    .+|.+.|++++|+|+|++|++|+.||.|+|    |+
T Consensus       314 ~~~~~~~~l----~~h~~~v~~l~~spdg~~l~sgs~D~~v~v----W~  354 (354)
T 2pbi_B          314 LKGSRVSIL----FGHENRVSTLRVSPDGTAFCSGSWDHTLRV----WA  354 (354)
T ss_dssp             TTCSEEEEE----CCCSSCEEEEEECTTSSCEEEEETTSEEEE----EC
T ss_pred             CCCceEEEE----ECCCCcEEEEEECCCCCEEEEEcCCCCEEe----cC
Confidence            999988888    799999999999999999999999999999    96

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=9.6e-56  Score=387.28  Aligned_cols=300  Identities=25%  Similarity=0.411  Sum_probs=273.3

Q ss_pred             CcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec
Q 016458           49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG  128 (389)
Q Consensus        49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  128 (389)
                      +..|.|.. .....+.+|.++|++++|+|++++|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+
T Consensus        91 ~~~~~~~~-~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs  169 (410)
T 1vyh_C           91 PKEWIPRP-PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS  169 (410)
T ss_dssp             -CCCCCCS-SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccCC-CceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEe
Confidence            44455433 33557889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCC
Q 016458          129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD  208 (389)
Q Consensus       129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  208 (389)
                      .|+.|++||+.+..       ....+.+|...|.+++|+|++ .++++|+.|+.|++||+.++..+..+     .+|...
T Consensus       170 ~D~~i~iwd~~~~~-------~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~-----~~h~~~  236 (410)
T 1vyh_C          170 ADMTIKLWDFQGFE-------CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTF-----TGHREW  236 (410)
T ss_dssp             TTSCCCEEETTSSC-------EEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEE-----ECCSSC
T ss_pred             CCCeEEEEeCCCCc-------eeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEE-----eCCCcc
Confidence            99999999998644       667788999999999999997 78999999999999999999998888     689999


Q ss_pred             eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecC--------------------CCEEEEE
Q 016458          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD--------------------GNRFGTG  268 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~  268 (389)
                      |.++.++| ++.++++|+.|+.|++||+++. .....+.+|...|.+++|+|+                    +.+|++|
T Consensus       237 v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg  314 (410)
T 1vyh_C          237 VRMVRPNQ-DGTLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  314 (410)
T ss_dssp             EEEEEECT-TSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             EEEEEECC-CCCEEEEEcCCCeEEEEECCCC-ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence            99999999 8899999999999999999987 778888999999999999996                    6789999


Q ss_pred             ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeE
Q 016458          269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  348 (389)
Q Consensus       269 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  348 (389)
                      +.||.|++||++++..+..+..+.     ..|++++|+|+|++|++|+.||.|++||+.+++.+..+    .+|...|++
T Consensus       315 s~D~~i~iwd~~~~~~~~~~~~h~-----~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~----~~h~~~v~~  385 (410)
T 1vyh_C          315 SRDKTIKMWDVSTGMCLMTLVGHD-----NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL----NAHEHFVTS  385 (410)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCS-----SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE----ECCSSCEEE
T ss_pred             eCCCeEEEEECCCCceEEEEECCC-----CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE----cCCCCcEEE
Confidence            999999999999998888776543     35999999999999999999999999999999988888    789999999


Q ss_pred             EEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          349 LGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       349 ~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      ++|+|++.+|++|+.||.|++    |++.
T Consensus       386 l~~~~~~~~l~sgs~D~~i~v----W~~r  410 (410)
T 1vyh_C          386 LDFHKTAPYVVTGSVDQTVKV----WECR  410 (410)
T ss_dssp             EEECSSSSCEEEEETTSEEEE----EC--
T ss_pred             EEEcCCCCEEEEEeCCCcEEE----EeCC
Confidence            999999999999999999999    9863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.5e-52  Score=353.31  Aligned_cols=293  Identities=18%  Similarity=0.305  Sum_probs=265.1

Q ss_pred             ceeeeecccccCcEEEEEEcCC----CCeEEEEecCCcEEEEeCCCCCe--eEEEeeCCCcEEEEEECCCCcEEEEecCC
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSE----RNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCAFSPTGQSVACGGLD  130 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~----~~~l~~~~~dg~v~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  130 (389)
                      ....+.+++|.++|++++|+|+    +.+|++|+.|++|++|++.+++.  ...+.+|...|.+++|++++.++++++.|
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D  101 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD  101 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence            4556788999999999999985    56899999999999999987654  34578899999999999999999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  210 (389)
                      +.|++||+.++.       ....+..|...+.+++|+|++ .+|++++.||.|++||+.++.....+     ..+...+.
T Consensus       102 ~~i~lWd~~~~~-------~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~-----~~~~~~v~  168 (321)
T 3ow8_A          102 AHIRLWDLENGK-------QIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSL-----DTRGKFIL  168 (321)
T ss_dssp             SEEEEEETTTTE-------EEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEE-----ECSSSCEE
T ss_pred             CcEEEEECCCCC-------EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEe-----cCCCceEE
Confidence            999999998754       566777888899999999998 78999999999999999999888877     67888999


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeec
Q 016458          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ  290 (389)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  290 (389)
                      +++|+| ++++|++++.||.|++||++++ +.+..+.+|..+|.+++|+|++++|++++.||.|++||++++.....+..
T Consensus       169 ~~~~sp-dg~~lasg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  246 (321)
T 3ow8_A          169 SIAYSP-DGKYLASGAIDGIINIFDIATG-KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG  246 (321)
T ss_dssp             EEEECT-TSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred             EEEECC-CCCEEEEEcCCCeEEEEECCCC-cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC
Confidence            999999 8899999999999999999987 78888999999999999999999999999999999999999888777654


Q ss_pred             cCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEe
Q 016458          291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVN  370 (389)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  370 (389)
                      +.     ..|.+++|+|++++|++++.|+.|++||+.+++.+..+    .+|...|.+++|+|++++|++++.||.|++ 
T Consensus       247 h~-----~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~----~~h~~~v~~v~~s~~g~~l~s~~~d~~i~v-  316 (321)
T 3ow8_A          247 HA-----SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF----FDHQDQVWGVKYNGNGSKIVSVGDDQEIHI-  316 (321)
T ss_dssp             CS-----SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE----CCCSSCEEEEEECTTSSEEEEEETTCCEEE-
T ss_pred             CC-----CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE----cCCCCcEEEEEECCCCCEEEEEeCCCeEEE-
Confidence            33     35999999999999999999999999999999999998    789999999999999999999999999999 


Q ss_pred             ecceecc
Q 016458          371 LGFWRVQ  377 (389)
Q Consensus       371 ~~~W~~~  377 (389)
                         ||..
T Consensus       317 ---wd~p  320 (321)
T 3ow8_A          317 ---YDCP  320 (321)
T ss_dssp             ---EECC
T ss_pred             ---EeCC
Confidence               9964

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=8.3e-52  Score=348.05  Aligned_cols=295  Identities=22%  Similarity=0.350  Sum_probs=261.1

Q ss_pred             ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (389)
                      +...++|.+|.+.|++++|+|++++|++|+.||+|++||+.++..+..+..|..+|.+++|+|++++|++|+.|+.|++|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence            35567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEEee
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSIS  215 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~  215 (389)
                      |+.++.       ....+.+|...|.+++|+|++ .+|++|+.|+.|++||++++ .....+     .+|...|.+++|+
T Consensus        83 d~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~-----~~h~~~v~~v~~~  149 (304)
T 2ynn_A           83 NYNTGE-------KVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTF-----EGHEHFVMCVAFN  149 (304)
T ss_dssp             ETTTCC-------EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEE-----CCCCSCEEEEEEC
T ss_pred             ECCCCc-------EEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhh-----cccCCcEEEEEEC
Confidence            998755       677888999999999999997 78999999999999999887 444555     6899999999999


Q ss_pred             CCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec--CCCEEEEEecCCeEEEEECCCCceeeEeeccCC
Q 016458          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG  293 (389)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  293 (389)
                      |.++.+|++|+.|+.|++||++...........|...+..++|+|  ++.+|++++.|+.|++||+++++.+..+..+..
T Consensus       150 p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~  229 (304)
T 2ynn_A          150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS  229 (304)
T ss_dssp             TTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC
Confidence            977889999999999999999877444444456778899999987  778999999999999999999988888765443


Q ss_pred             CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC--eEEeeeCCCeeEEee
Q 016458          294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS--ALCTGSWDTNLKVNL  371 (389)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~~  371 (389)
                           .|.+++|+|++++|++|+.||.|++||+.+++....+    ..|...+.+++|+|++.  ++++|+.|| +.+  
T Consensus       230 -----~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~--  297 (304)
T 2ynn_A          230 -----NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL----NVGLERSWCIATHPTGRKNYIASGFDNG-FTV--  297 (304)
T ss_dssp             -----CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE----CCSSSSEEEEEECTTCGGGCEEEEETTE-EEE--
T ss_pred             -----CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec----cCCCccEEEEEECCCCCceEEEEecCCc-eEE--
Confidence                 4999999999999999999999999999999999998    78889999999999875  467766555 555  


Q ss_pred             cceeccc
Q 016458          372 GFWRVQE  378 (389)
Q Consensus       372 ~~W~~~~  378 (389)
                        |++.+
T Consensus       298 --~~~~~  302 (304)
T 2ynn_A          298 --LSLGN  302 (304)
T ss_dssp             --EECC-
T ss_pred             --EEecc
Confidence              77654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.3e-50  Score=343.06  Aligned_cols=300  Identities=25%  Similarity=0.359  Sum_probs=261.3

Q ss_pred             CCcceeeeecccccCcEEEEEEcCCC-CeEEEEecCCcEEEEeCCC-----CCeeEEEeeCCCcEEEEEECCCCcEEEEe
Q 016458           54 PTDLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALT-----SQKTHAIKLPCAWVMTCAFSPTGQSVACG  127 (389)
Q Consensus        54 ~~~~~~~~~l~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  127 (389)
                      +..+.+..+|.+|.++|++++|+|++ ++|++|+.|++|++|++..     +..+..+.+|...|.+++|+|++++|++|
T Consensus         4 ~~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~   83 (319)
T 3frx_A            4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA   83 (319)
T ss_dssp             CEEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ceEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence            34567888999999999999999965 7999999999999999864     23466788999999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458          128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (389)
Q Consensus       128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  207 (389)
                      +.|+.|++||+.++.       ....+.+|...|.+++|+|++ .++++|+.|+.|++||+.. .....+     .+|..
T Consensus        84 s~D~~v~~wd~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~-~~~~~~-----~~h~~  149 (319)
T 3frx_A           84 SWDKTLRLWDVATGE-------TYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKG-QCLATL-----LGHND  149 (319)
T ss_dssp             ETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTS-CEEEEE-----CCCSS
T ss_pred             eCCCEEEEEECCCCC-------eeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-CeEEEE-----eccCC
Confidence            999999999998755       567888999999999999987 7899999999999999975 455555     68999


Q ss_pred             CeeEEEeeCC-----CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCC
Q 016458          208 DVLSVSISGS-----NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG  282 (389)
Q Consensus       208 ~v~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  282 (389)
                      .|.++.+.|.     ++..+++++.|+.|++||++.. .....+.+|...|.+++|+|++++|++++.||.|++||+.++
T Consensus       150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK  228 (319)
T ss_dssp             CEEEEEECCC------CCEEEEEETTSCEEEEETTTT-EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            9999999983     2348999999999999999987 677788899999999999999999999999999999999999


Q ss_pred             ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCc----CCCCCCCeeEEEECCCCCeE
Q 016458          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL----QNSHEGRITCLGLSADGSAL  358 (389)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l  358 (389)
                      +.+..+....      .+.+++|+|++.+|++++.+ .+++|++........+...    ...|...+.+++|+|||++|
T Consensus       229 ~~~~~~~~~~------~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  301 (319)
T 3frx_A          229 KAMYTLSAQD------EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL  301 (319)
T ss_dssp             EEEEEEECCS------CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEE
T ss_pred             cEEEEecCCC------cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEE
Confidence            8887775432      49999999999999988765 5999999988777665321    12456789999999999999


Q ss_pred             EeeeCCCeeEEeecceecccC
Q 016458          359 CTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       359 ~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      ++|+.||.|+|    |++.++
T Consensus       302 ~sg~~Dg~i~v----Wd~~t~  318 (319)
T 3frx_A          302 FAGYTDNVIRV----WQVMTA  318 (319)
T ss_dssp             EEEETTSCEEE----EEEEEC
T ss_pred             EEeecCceEEE----EEEeec
Confidence            99999999999    999875

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2e-50  Score=345.65  Aligned_cols=311  Identities=22%  Similarity=0.325  Sum_probs=253.0

Q ss_pred             cceeeeecccccC-cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEE---EeeCCCcEEEEEECCCCcEEEEecCCC
Q 016458           56 DLVCCRTLQGHAG-KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA---IKLPCAWVMTCAFSPTGQSVACGGLDS  131 (389)
Q Consensus        56 ~~~~~~~l~~h~~-~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg  131 (389)
                      ...++.++.+|.+ .|.+++|+|++++||+|+.|++|+|||+.++.....   ..+|...|.+++|+|++++|++|+.|+
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence            4577889999998 999999999999999999999999999988764322   256889999999999999999999999


Q ss_pred             cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee---EEEecCcccCCCCCC
Q 016458          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR---TSVFGGEFQSGHTAD  208 (389)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~  208 (389)
                      .|++|++....     ......+.+|...|.+++|+|++ ++|++++.|+.|++||+.++..   ...+     ..|...
T Consensus        84 ~v~iw~~~~~~-----~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-----~~h~~~  152 (345)
T 3fm0_A           84 TTCIWKKNQDD-----FECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVL-----NSHTQD  152 (345)
T ss_dssp             CEEEEEECCC------EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEE-----CCCCSC
T ss_pred             cEEEEEccCCC-----eEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEe-----cCcCCC
Confidence            99999987632     23567788999999999999997 7999999999999999987643   3444     688999


Q ss_pred             eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC-cceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeE
Q 016458          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV  287 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  287 (389)
                      |.+++|+| ++.+|++++.|+.|++||.+... .....+.+|...|.+++|+|++++|++++.|+.|++||.........
T Consensus       153 v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~  231 (345)
T 3fm0_A          153 VKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG  231 (345)
T ss_dssp             EEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTC
T ss_pred             eEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcc
Confidence            99999999 88899999999999999988652 24567889999999999999999999999999999999643221100


Q ss_pred             -----------eeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE----EEee-cCcCCCCCCCeeEEEE
Q 016458          288 -----------YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV----VLNL-GSLQNSHEGRITCLGL  351 (389)
Q Consensus       288 -----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~-~~~~~~~~~~v~~~~~  351 (389)
                                 ........+...|.+++|+|++..|++++.|+.|++|+......    ...+ .....+|...|++++|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  311 (345)
T 3fm0_A          232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW  311 (345)
T ss_dssp             CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEE
T ss_pred             ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEE
Confidence                       00001112344699999999999999999999999999865421    1100 0111589999999999


Q ss_pred             CCCC-CeEEeeeCCCeeEEeecceecccCccc
Q 016458          352 SADG-SALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       352 ~~~~-~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      +|++ .+|++|+.||.|++    |++.+++..
T Consensus       312 ~p~~~~~laS~s~Dg~v~~----W~~~~~~~~  339 (345)
T 3fm0_A          312 NPKEPGLLASCSDDGEVAF----WKYQRPEGL  339 (345)
T ss_dssp             CSSSTTEEEEEETTSCEEE----EEECC----
T ss_pred             eCCCceEEEEcCCCCcEEE----EEecCCCCc
Confidence            9987 49999999999999    999987643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.3e-49  Score=334.94  Aligned_cols=297  Identities=23%  Similarity=0.426  Sum_probs=264.6

Q ss_pred             cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEE
Q 016458           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI  135 (389)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  135 (389)
                      ......++.+|.++|++++|+|++++|++|+.||.|++|+..+++....+..|...|.+++|+|++++|++++.|+.|++
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   91 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI   91 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence            45777899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (389)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  215 (389)
                      ||+.++.       ....+.+|...|.++.|+|++ .++++++.|+.|++||+++++....+     ..|...|.+++|+
T Consensus        92 wd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~  158 (312)
T 4ery_A           92 WDVSSGK-------CLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTL-----PAHSDPVSAVHFN  158 (312)
T ss_dssp             EETTTCC-------EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEEC
T ss_pred             EECCCCc-------EEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEe-----cCCCCcEEEEEEc
Confidence            9998754       667788999999999999997 78999999999999999999988888     6888999999999


Q ss_pred             CCCCcEEEEeeCCCceEEEeCCCCCcceeEE-eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCC
Q 016458          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE  294 (389)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  294 (389)
                      | ++.+|++++.||.|++||+++. +.+..+ ..+..++..++|+|++++|++++.||.|++||+++++.+..+..+...
T Consensus       159 ~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  236 (312)
T 4ery_A          159 R-DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE  236 (312)
T ss_dssp             T-TSSEEEEEETTSCEEEEETTTC-CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCS
T ss_pred             C-CCCEEEEEeCCCcEEEEECCCC-ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCc
Confidence            9 8889999999999999999987 444444 446678999999999999999999999999999999887777554322


Q ss_pred             CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeee--CCCeeEEeec
Q 016458          295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS--WDTNLKVNLG  372 (389)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~~~  372 (389)
                        ...+......+++.+|++|+.||.|++||+.+++.+..+    .+|...|.+++|+|++.+|++++  .|+.|++   
T Consensus       237 --~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~----~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~---  307 (312)
T 4ery_A          237 --KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL----QGHTDVVISTACHPTENIIASAALENDKTIKL---  307 (312)
T ss_dssp             --SSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE----CCCSSCEEEEEECSSSSEEEEEECTTTCCEEE---
T ss_pred             --eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh----hccCCcEEEEeecCcCCceEEEEccCCccEEE---
Confidence              112333334467889999999999999999999999988    79999999999999999999987  6999999   


Q ss_pred             ceecc
Q 016458          373 FWRVQ  377 (389)
Q Consensus       373 ~W~~~  377 (389)
                       |+.+
T Consensus       308 -W~~d  311 (312)
T 4ery_A          308 -WKSD  311 (312)
T ss_dssp             -EECC
T ss_pred             -ecCC
Confidence             9864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.2e-50  Score=342.03  Aligned_cols=297  Identities=19%  Similarity=0.210  Sum_probs=238.3

Q ss_pred             ccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCC-----------CCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCc
Q 016458           64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL-----------TSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV  132 (389)
Q Consensus        64 ~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (389)
                      ..|...|.+++|+|||++|++++ |+++++||..           ..........+...|.+++|+|++ .|++|+.||.
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~  104 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA  104 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence            45778899999999999998887 6778888631           111122223355679999999985 6789999999


Q ss_pred             EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (389)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  212 (389)
                      |+|||+.+++.   .........+|.+.|.+++|+|++ ++|++|+.|+.|++||+.+++.+..+     .+|...|.++
T Consensus       105 v~lWd~~~~~~---~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~-----~~h~~~V~~~  175 (344)
T 4gqb_B          105 VELWELDENET---LIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSY-----RAHAAQVTCV  175 (344)
T ss_dssp             EEEEEECTTSS---CEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEE
T ss_pred             EEEEeccCCCc---eeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEE-----cCcCCceEEE
Confidence            99999987541   112233456899999999999998 78999999999999999999999998     7899999999


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE--eeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEee
Q 016458          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--HGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (389)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (389)
                      +|+|.+..+|++++.|+.|++||+++. +....+  ..|...+.+++|+| ++++|++|+.||.|++||+++++.+..+.
T Consensus       176 ~~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~  254 (344)
T 4gqb_B          176 AASPHKDSVFLSCSEDNRILLWDTRCP-KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA  254 (344)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTSS-SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE
T ss_pred             EecCCCCCceeeecccccccccccccc-ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc
Confidence            999966679999999999999999987 555554  34556799999999 56788999999999999999999888876


Q ss_pred             ccCCCCCCCCeeEEEeCCCC-CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC-eEEeeeCCCee
Q 016458          290 QQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGSWDTNL  367 (389)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i  367 (389)
                      .+..     .|++++|+|++ ++|++|+.|+.|+|||+.+++... +    .+|.+.|++++|+|+++ +|++++.||+|
T Consensus       255 ~h~~-----~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~----~~H~~~V~~v~~sp~~~~llas~s~D~~v  324 (344)
T 4gqb_B          255 VHSQ-----CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S----QAHRDFVRDATWSPLNHSLLTTVGWDHQV  324 (344)
T ss_dssp             CCSS-----CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E----CCCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred             CCCC-----CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E----cCCCCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence            5443     59999999998 589999999999999999887654 4    68999999999999986 56789999999


Q ss_pred             EEeecceecccCcccCccc
Q 016458          368 KVNLGFWRVQEGALSPWGV  386 (389)
Q Consensus       368 ~i~~~~W~~~~~~~~~~~~  386 (389)
                      ++    |++.+..+..-++
T Consensus       325 ~~----w~v~~~~~~~p~p  339 (344)
T 4gqb_B          325 VH----HVVPTEPLPAPGP  339 (344)
T ss_dssp             EE----EECCC--------
T ss_pred             EE----EECCCCCCCCCCC
Confidence            99    9999876654333

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.3e-49  Score=339.15  Aligned_cols=301  Identities=20%  Similarity=0.312  Sum_probs=250.1

Q ss_pred             cceeeeecccccCcEEEEEE-----cC-CCCeEEEEecCCcEEEEeCCCC-------CeeEEEeeCCCcEEEEEECCCCc
Q 016458           56 DLVCCRTLQGHAGKVYSLDW-----TS-ERNRIVSASQDGRLIVWNALTS-------QKTHAIKLPCAWVMTCAFSPTGQ  122 (389)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~-----~~-~~~~l~~~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~  122 (389)
                      ...+...|.+|.+.|++++|     ++ ++++|++|+.|++|++||+.+.       .....+.+|...|.+++|+|++.
T Consensus        10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~   89 (343)
T 2xzm_R           10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC   89 (343)
T ss_dssp             EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred             EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence            45677899999999999999     76 8999999999999999998754       34567788999999999999999


Q ss_pred             EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCccc
Q 016458          123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ  202 (389)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  202 (389)
                      ++++|+.|+.|++||+.++.       ....+.+|...|.+++|+|++ .+|++++.|+.|++||+...... ...  ..
T Consensus        90 ~l~s~s~D~~v~lwd~~~~~-------~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~-~~~--~~  158 (343)
T 2xzm_R           90 FAISSSWDKTLRLWDLRTGT-------TYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKF-SSA--EK  158 (343)
T ss_dssp             EEEEEETTSEEEEEETTSSC-------EEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEE-ECC--TT
T ss_pred             EEEEEcCCCcEEEEECCCCc-------EEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCcee-eee--cc
Confidence            99999999999999998754       567788999999999999997 78999999999999999854332 221  11


Q ss_pred             CCCCCCeeEEEeeCCC---------CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCe
Q 016458          203 SGHTADVLSVSISGSN---------SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  273 (389)
Q Consensus       203 ~~~~~~v~~~~~~~~~---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  273 (389)
                      ..|...|.+++|+|..         ..+|++++.||.|++||.+  ......+.+|...|.+++|+|++++|++|+.||.
T Consensus       159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~  236 (343)
T 2xzm_R          159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK  236 (343)
T ss_dssp             TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCCEEEEEcCCCe
Confidence            3688899999999843         2689999999999999954  3566788899999999999999999999999999


Q ss_pred             EEEEECCCCc-eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEE--eecC-------cCCCCC
Q 016458          274 CRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL--NLGS-------LQNSHE  343 (389)
Q Consensus       274 i~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~-------~~~~~~  343 (389)
                      |++||+.... ....+.. .     ..|.+++|+|++.+++++ .|+.|++||+.+++...  .+..       ...+|.
T Consensus       237 v~iwd~~~~~~~~~~~~~-~-----~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (343)
T 2xzm_R          237 LLIWDILNLTYPQREFDA-G-----STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN  309 (343)
T ss_dssp             EEEEESSCCSSCSEEEEC-S-----SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSC
T ss_pred             EEEEECCCCcccceeecC-C-----CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCC
Confidence            9999995443 3333322 1     249999999999988765 57789999998765433  3311       012688


Q ss_pred             CCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458          344 GRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       344 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~  380 (389)
                      ..|.+++|+|+|++|++|+.||.|++    |++++|+
T Consensus       310 ~~v~~~~~sp~g~~l~sg~~Dg~v~~----w~~~~g~  342 (343)
T 2xzm_R          310 PQCTSLAWNALGKKLFAGFTDGVIRT----FSFETSA  342 (343)
T ss_dssp             CCEEEEEECSSSCCEEEEETTSEEEE----EEEEEEE
T ss_pred             CceEEEEECCCCCeEEEecCCceEEE----EEEEccC
Confidence            89999999999999999999999999    9998764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-49  Score=335.69  Aligned_cols=303  Identities=21%  Similarity=0.325  Sum_probs=239.4

Q ss_pred             cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--eeEEE-ee-CCCcEEEEEECCCCcEEEEecCCC
Q 016458           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAI-KL-PCAWVMTCAFSPTGQSVACGGLDS  131 (389)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~dg  131 (389)
                      .+.+.++|.+|.++|.+++|+|+  +|++|+.|++|++||+.++.  ....+ .. |...|.+++|+|++++|++|+.|+
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~   80 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS   80 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence            34677899999999999999998  99999999999999998753  34444 33 888999999999999999999999


Q ss_pred             cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC----eeEEEecCcccCCCCC
Q 016458          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG----LRTSVFGGEFQSGHTA  207 (389)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~  207 (389)
                      .|++|++...............+.+|...|.+++|+|++ .+|++|+.|+.|++||+...    +....+     ..|..
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~-----~~h~~  154 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVL-----QEHSQ  154 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEE-----CCCSS
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEe-----ccCCC
Confidence            999999965322112234566788999999999999997 79999999999999999532    445555     68999


Q ss_pred             CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC-cceeEEeeeccceEEEEEecC--CCEEEEEecCCeEEEEECCCCc-
Q 016458          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGH-  283 (389)
Q Consensus       208 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~-  283 (389)
                      .|.+++|+| ++.+|++++.|+.|++||.+... .++..+.+|...|.+++|+|+  +.+|++++.|+.|++||++.+. 
T Consensus       155 ~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~  233 (330)
T 2hes_X          155 DVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE  233 (330)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred             ceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence            999999999 88899999999999999987542 467788899999999999998  7789999999999999987542 


Q ss_pred             -------eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce--EEEeecCcCCCCCC-CeeEEEECC
Q 016458          284 -------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--VVLNLGSLQNSHEG-RITCLGLSA  353 (389)
Q Consensus       284 -------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~-~v~~~~~~~  353 (389)
                             ....+.    ..+...|.+++|++++ +|++++.||.|++||..+++  ......   ..|.. .|.+++|+|
T Consensus       234 ~~~~~~~~~~~~~----~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~---~~h~~~~v~~v~~~~  305 (330)
T 2hes_X          234 DDQQEWVCEAILP----DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA---LCHGVYEINVVKWLE  305 (330)
T ss_dssp             TSCEEEEEEEECC----SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES---CTTTTSCEEEEEEC-
T ss_pred             cccceeEEeeecc----cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc---cccccceEEEEEEec
Confidence                   112111    1244569999999765 88999999999999998774  232221   56776 899999999


Q ss_pred             --CCCeEEeeeCCCeeEEeecceecccC
Q 016458          354 --DGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       354 --~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                        ++++|++|+.||.|++    |++++.
T Consensus       306 ~~~~~~las~s~Dg~v~~----W~~~~~  329 (330)
T 2hes_X          306 LNGKTILATGGDDGIVNF----WSLEKA  329 (330)
T ss_dssp             ----CCEEEEETTSEEEE----EEC---
T ss_pred             CCCceEEEEecCCCcEEE----EEeccC
Confidence              7899999999999999    998754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.5e-49  Score=341.34  Aligned_cols=292  Identities=18%  Similarity=0.269  Sum_probs=240.6

Q ss_pred             cccccCcEEEEEEcCCCCeEEEEec------CCcEEEEeCCCCCe----eEEEeeCCCcEEEEEECCCCcEEEEecCCCc
Q 016458           63 LQGHAGKVYSLDWTSERNRIVSASQ------DGRLIVWNALTSQK----THAIKLPCAWVMTCAFSPTGQSVACGGLDSV  132 (389)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~~~~~------dg~v~iw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (389)
                      ..+|.+.|++++|+|||++||+|+.      |+.|++|+..++..    ......|...|.+++|+|++.++ +++.||.
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~  116 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSGA  116 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTSC
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCCE
Confidence            3579999999999999999999997      78899999877654    33445678889999999998655 5678999


Q ss_pred             EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (389)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  212 (389)
                      |++||+.+++.   .........+|...|.+++|+|++ ++|++|+.|+.|++||+.+++....+     ..|...|.++
T Consensus       117 v~lWd~~~~~~---~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~-----~~h~~~v~~v  187 (357)
T 4g56_B          117 VELWEILEKES---LLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSY-----NAHSSEVNCV  187 (357)
T ss_dssp             EEEC-----------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEE
T ss_pred             EEEeeccccce---eEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEE-----cCCCCCEEEE
Confidence            99999987542   112233456899999999999997 78999999999999999999999988     7899999999


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeE--EeeeccceEEEEEecC-CCEEEEEecCCeEEEEECCCCceeeEee
Q 016458          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRT--FHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (389)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (389)
                      +|+|.+..++++++.||.|++||++++ ++...  ...|...+.+++|+|+ +.+|++|+.|+.|++||+++++....+.
T Consensus       188 ~~s~~~~~~~~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~  266 (357)
T 4g56_B          188 AACPGKDTIFLSCGEDGRILLWDTRKP-KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA  266 (357)
T ss_dssp             EECTTCSSCEEEEETTSCEEECCTTSS-SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC
T ss_pred             EEccCCCceeeeeccCCceEEEECCCC-ceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe
Confidence            999966678999999999999999987 44333  3456778999999996 5688999999999999999998888775


Q ss_pred             ccCCCCCCCCeeEEEeCCCC-CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC-CCCeEEeeeCCCee
Q 016458          290 QQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNL  367 (389)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i  367 (389)
                      .+..     .|++++|+|++ ++|++|+.||.|+|||+.+++.+..+     +|.+.|++++|+| ++.+|++++.||.|
T Consensus       267 ~~~~-----~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-----~H~~~V~~vafsP~d~~~l~s~s~Dg~v  336 (357)
T 4g56_B          267 VHSQ-----NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-----SHRDFVTGVAWSPLDHSKFTTVGWDHKV  336 (357)
T ss_dssp             CCSS-----CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-----CCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred             ccce-----eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-----CCCCCEEEEEEeCCCCCEEEEEcCCCeE
Confidence            5443     59999999987 58999999999999999999887654     7999999999998 89999999999999


Q ss_pred             EEeecceecccC
Q 016458          368 KVNLGFWRVQEG  379 (389)
Q Consensus       368 ~i~~~~W~~~~~  379 (389)
                      ++    |++.+.
T Consensus       337 ~i----W~~~~~  344 (357)
T 4g56_B          337 LH----HHLPSE  344 (357)
T ss_dssp             EE----EECC--
T ss_pred             EE----EECCCC
Confidence            99    999753

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6.7e-48  Score=330.15  Aligned_cols=305  Identities=26%  Similarity=0.408  Sum_probs=258.7

Q ss_pred             cCCCcceeeeecccccCcEEEEEEcCC-CCeEEEEecCCcEEEEeCCCCC-----eeEEEeeCCCcEEEEEECCCCcEEE
Q 016458           52 FGPTDLVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQ-----KTHAIKLPCAWVMTCAFSPTGQSVA  125 (389)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~  125 (389)
                      ..+.++.+..+|+||.+.|++|+|+|+ +++|+||+.||+|+|||+.+.+     +...+.+|...|.+++|+|++++|+
T Consensus        23 ~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~  102 (340)
T 4aow_A           23 MMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFAL  102 (340)
T ss_dssp             ---CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEE
Confidence            345677888899999999999999997 5799999999999999987654     3566778999999999999999999


Q ss_pred             EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCC
Q 016458          126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH  205 (389)
Q Consensus       126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  205 (389)
                      +++.|+.|++|+.....       .......+...+..+.+.+++ .++++++.|+.+++||+..........    ..|
T Consensus       103 s~~~d~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~----~~~  170 (340)
T 4aow_A          103 SGSWDGTLRLWDLTTGT-------TTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQD----ESH  170 (340)
T ss_dssp             EEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECS----SSC
T ss_pred             EEcccccceEEeecccc-------eeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEe----ccc
Confidence            99999999999998744       455666777888899999987 689999999999999998766554432    578


Q ss_pred             CCCeeEEEeeCCC-CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458          206 TADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ  284 (389)
Q Consensus       206 ~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  284 (389)
                      ...+..+++++.. ..++++++.|+.|++||+++. +....+.+|..+|.+++|+|++++|++++.||.|++||+++.+.
T Consensus       171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~  249 (340)
T 4aow_A          171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH  249 (340)
T ss_dssp             SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred             cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce
Confidence            8899999998743 457789999999999999987 78888899999999999999999999999999999999999888


Q ss_pred             eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC-----cCCCCCCCeeEEEECCCCCeEE
Q 016458          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS-----LQNSHEGRITCLGLSADGSALC  359 (389)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~  359 (389)
                      +..+....      .+.+++|+|++.++ +++.|+.|++||+.++..+..+..     ....|...|++++|+|+|++|+
T Consensus       250 ~~~~~~~~------~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~  322 (340)
T 4aow_A          250 LYTLDGGD------IINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF  322 (340)
T ss_dssp             EEEEECSS------CEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEE
T ss_pred             eeeecCCc------eEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE
Confidence            87765432      48999999988665 455789999999998887766542     1246889999999999999999


Q ss_pred             eeeCCCeeEEeecceecccCc
Q 016458          360 TGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       360 ~~~~dg~i~i~~~~W~~~~~~  380 (389)
                      +|+.||.|+|    |++.+|+
T Consensus       323 sgs~Dg~v~i----W~~~tGt  339 (340)
T 4aow_A          323 AGYTDNLVRV----WQVTIGT  339 (340)
T ss_dssp             EEETTSCEEE----EEEEC--
T ss_pred             EEeCCCEEEE----EeCCCcC
Confidence            9999999999    9999986

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-48  Score=339.74  Aligned_cols=287  Identities=22%  Similarity=0.444  Sum_probs=248.3

Q ss_pred             cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC------------------CcEEEEEECCCCcEEEE
Q 016458           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC------------------AWVMTCAFSPTGQSVAC  126 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~l~~  126 (389)
                      +|.+.|++++|+|+|++||+|+ ++++++|++.+++.+..+..+.                  ..|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999987 6799999999999887776543                  24899999999999999


Q ss_pred             ecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCC
Q 016458          127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT  206 (389)
Q Consensus       127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  206 (389)
                      |+.|+.|++||+.++.       ....+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++....+      .+.
T Consensus       141 ~~~d~~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~------~~~  206 (393)
T 1erj_A          141 GAEDRLIRIWDIENRK-------IVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTL------SIE  206 (393)
T ss_dssp             EETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEE------ECS
T ss_pred             EcCCCeEEEEECCCCc-------EEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEE------EcC
Confidence            9999999999998754       567788999999999999997 68999999999999999999887776      356


Q ss_pred             CCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE-------eeeccceEEEEEecCCCEEEEEecCCeEEEEEC
Q 016458          207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-------HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI  279 (389)
Q Consensus       207 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  279 (389)
                      ..+.+++++|.++.+|++|+.||.|++||+++. ..+..+       .+|...|.+++|+|++++|++++.||.|++||+
T Consensus       207 ~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~  285 (393)
T 1erj_A          207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL  285 (393)
T ss_dssp             SCEEEEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC-cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            679999999978899999999999999999876 555554       578899999999999999999999999999999


Q ss_pred             CCCce------------eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCee
Q 016458          280 RTGHQ------------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT  347 (389)
Q Consensus       280 ~~~~~------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  347 (389)
                      ++...            ...+.     .+...|.+++|+|++.+|++|+.||.|++||+.+++.+..+    .+|...|.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l----~~h~~~v~  356 (393)
T 1erj_A          286 QNANNKSDSKTPNSGTCEVTYI-----GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML----QGHRNSVI  356 (393)
T ss_dssp             ---------------CEEEEEE-----CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE----ECCSSCEE
T ss_pred             CCCCCcccccCCCCCcceEEEe-----cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE----CCCCCCEE
Confidence            86432            22222     23346999999999999999999999999999999999888    78999999


Q ss_pred             EEEECC------CCCeEEeeeCCCeeEEeecceecccCc
Q 016458          348 CLGLSA------DGSALCTGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       348 ~~~~~~------~~~~l~~~~~dg~i~i~~~~W~~~~~~  380 (389)
                      +++|++      ++.+|++|+.||.|+|    |++...+
T Consensus       357 ~v~~~~~~~~~p~~~~l~sgs~Dg~i~i----W~~~~~~  391 (393)
T 1erj_A          357 SVAVANGSSLGPEYNVFATGSGDCKARI----WKYKKIA  391 (393)
T ss_dssp             EEEECSSCTTCTTCEEEEEEETTSEEEE----EEEEEC-
T ss_pred             EEEecCCcCcCCCCCEEEEECCCCcEEE----CcccccC
Confidence            999886      6889999999999999    9987643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.1e-47  Score=353.03  Aligned_cols=307  Identities=18%  Similarity=0.247  Sum_probs=266.7

Q ss_pred             CCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--eeEEEeeCCCcEEEEEECCCCcEEE
Q 016458           48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVA  125 (389)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~  125 (389)
                      ....|+..+......|.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++  ....+..|.++|.+++|+|++++|+
T Consensus        40 ~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~  119 (611)
T 1nr0_A           40 SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIA  119 (611)
T ss_dssp             EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEE
T ss_pred             EEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEE
Confidence            44567777777888999999999999999999999999999999999987544  4456788999999999999999999


Q ss_pred             EecCC----CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc
Q 016458          126 CGGLD----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (389)
Q Consensus       126 ~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  201 (389)
                      +++.+    +.|++||...         ....+.+|...|.+++|+|+++..|++++.|++|++||..+++....+    
T Consensus       120 ~~~~~~~~~~~v~~wd~~~---------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l----  186 (611)
T 1nr0_A          120 AVGEGRERFGHVFLFDTGT---------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF----  186 (611)
T ss_dssp             EEECCSSCSEEEEETTTCC---------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE----
T ss_pred             EEECCCCceeEEEEeeCCC---------CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee----
Confidence            98765    4788887543         345678999999999999998667999999999999999998888888    


Q ss_pred             cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-------eeccceEEEEEecCCCEEEEEecCCeE
Q 016458          202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-------GHEGDVNTVKFFPDGNRFGTGSDDGTC  274 (389)
Q Consensus       202 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i  274 (389)
                       .+|...|.+++|+| ++++|++++.|+.|++||+.++ .....+.       +|...|.+++|+|++++|++++.|++|
T Consensus       187 -~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g-~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v  263 (611)
T 1nr0_A          187 -GEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI  263 (611)
T ss_dssp             -CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             -ccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCC-cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeE
Confidence             78999999999999 8899999999999999999877 5565663       799999999999999999999999999


Q ss_pred             EEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458          275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (389)
Q Consensus       275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (389)
                      ++||+.+++....+.....  .......+.|  +++.+++++.||.+++||...++....+    .+|...|++++|+|+
T Consensus       264 ~lWd~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~----~gh~~~v~~l~~spd  335 (611)
T 1nr0_A          264 KIWNVATLKVEKTIPVGTR--IEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVR----YGHNKAITALSSSAD  335 (611)
T ss_dssp             EEEETTTTEEEEEEECCSS--GGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEE----CCCSSCEEEEEECTT
T ss_pred             EEEeCCCCceeeeecCCCC--ccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEE----cCCCCCEEEEEEeCC
Confidence            9999999988877654321  1223556666  6789999999999999999998887777    799999999999999


Q ss_pred             CCeEEeeeCCCeeEEeecceecccCccc
Q 016458          355 GSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       355 ~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      |++|++++.|+.|++    ||+.+++..
T Consensus       336 g~~l~s~s~D~~v~~----Wd~~~~~~~  359 (611)
T 1nr0_A          336 GKTLFSADAEGHINS----WDISTGISN  359 (611)
T ss_dssp             SSEEEEEETTSCEEE----EETTTCCEE
T ss_pred             CCEEEEEeCCCcEEE----EECCCCcee
Confidence            999999999999999    999987653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.1e-48  Score=355.30  Aligned_cols=321  Identities=18%  Similarity=0.273  Sum_probs=261.0

Q ss_pred             cccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe-------eCCCcEEE
Q 016458           42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-------LPCAWVMT  114 (389)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-------~~~~~v~~  114 (389)
                      ..+.+.....|+....++..++.+|.+.|.+++|+|++++|++|+.|++|++||..+++....+.       .|.+.|.+
T Consensus       165 s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~  244 (611)
T 1nr0_A          165 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG  244 (611)
T ss_dssp             EEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEE
T ss_pred             EEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEE
Confidence            34455667788888888899999999999999999999999999999999999999999888874       68899999


Q ss_pred             EEECCCCcEEEEecCCCcEEEEeCCCCCCCCC------------------------------------CCcceeeecccc
Q 016458          115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG------------------------------------NLPVSRMLSGHK  158 (389)
Q Consensus       115 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~------------------------------------~~~~~~~~~~~~  158 (389)
                      ++|+|++++|++++.|++|++||+.++.....                                    .......+.+|.
T Consensus       245 v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~  324 (611)
T 1nr0_A          245 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN  324 (611)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCS
T ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCC
Confidence            99999999999999999999999986431100                                    001234556899


Q ss_pred             cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc-------------------------------------
Q 016458          159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF-------------------------------------  201 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------------------  201 (389)
                      ..|.+++|+|++ .+|++++.|+.|++||+.++.....+....                                     
T Consensus       325 ~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~  403 (611)
T 1nr0_A          325 KAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSS  403 (611)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTT
T ss_pred             CCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccccc
Confidence            999999999998 789999999999999998765433220000                                     


Q ss_pred             ----------------------------------------cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc
Q 016458          202 ----------------------------------------QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR  241 (389)
Q Consensus       202 ----------------------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  241 (389)
                                                              ...+...+.+++|+| ++++|++|+.|+.|++||+.....
T Consensus       404 ~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~  482 (611)
T 1nr0_A          404 KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASV  482 (611)
T ss_dssp             SCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEE
T ss_pred             ceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCce
Confidence                                                    001234577899999 889999999999999999976521


Q ss_pred             -ceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCC-CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC
Q 016458          242 -AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG  319 (389)
Q Consensus       242 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (389)
                       .... .+|...|.+++|+|++++|++++.|+.|++||+.+ ++......   ...|...|.+++|+|+|++|++|+.|+
T Consensus       483 ~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~---~~~H~~~V~~v~fspdg~~lasgs~D~  558 (611)
T 1nr0_A          483 SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS---WTFHTAKVACVSWSPDNVRLATGSLDN  558 (611)
T ss_dssp             EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC---CCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee---eeecccceeEEEECCCCCEEEEEECCC
Confidence             1233 67999999999999999999999999999999987 44332201   112445699999999999999999999


Q ss_pred             cEEEEEcccce-EE-EeecCcCCCC-CCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          320 DCYVWDTLLAK-VV-LNLGSLQNSH-EGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       320 ~i~i~d~~~~~-~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      .|++||+.++. .. ..+    .+| ...|.+++|+|+++ |++++.|++|++    |++.
T Consensus       559 ~v~lW~~~~~~~~~~~~~----~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~l----W~~~  610 (611)
T 1nr0_A          559 SVIVWNMNKPSDHPIIIK----GAHAMSSVNSVIWLNETT-IVSAGQDSNIKF----WNVP  610 (611)
T ss_dssp             CEEEEETTCTTSCCEEET----TSSTTSCEEEEEEEETTE-EEEEETTSCEEE----EECC
T ss_pred             cEEEEECCCcccccchhh----ccCcccCeeEEEEcCCCE-EEEecCCCCEEE----Eecc
Confidence            99999998765 22 344    688 89999999999998 999999999999    9973

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-46  Score=325.14  Aligned_cols=302  Identities=14%  Similarity=0.225  Sum_probs=265.5

Q ss_pred             cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEE
Q 016458           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI  135 (389)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  135 (389)
                      .......|.+|.++|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++
T Consensus        21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL  100 (369)
T ss_dssp             CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred             cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            34566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC-----CeEEEEeCCCCeeEEEecC------cccCC
Q 016458          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDITTGLRTSVFGG------EFQSG  204 (389)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~------~~~~~  204 (389)
                      ||+.++.       ....+. +...+.+++|+|++ .++++++.+     |.|++||+........+..      .....
T Consensus       101 wd~~~~~-------~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  171 (369)
T 3zwl_B          101 WDVSNGQ-------CVATWK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT  171 (369)
T ss_dssp             EETTTCC-------EEEEEE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC
T ss_pred             EECCCCc-------EEEEee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC
Confidence            9998754       444444 88899999999997 689999888     9999999876532111100      00023


Q ss_pred             CCC--CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCC
Q 016458          205 HTA--DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG  282 (389)
Q Consensus       205 ~~~--~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  282 (389)
                      +..  .+.+++|+| ++++|++++.||.|++||+++....+..+..|...|.+++|+|++++|++++.||.|++||++++
T Consensus       172 ~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          172 HEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL  250 (369)
T ss_dssp             CTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             CcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence            444  899999999 88899999999999999999855788889999999999999999999999999999999999999


Q ss_pred             ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC--------------cEEEEEcccceEEEeecCcCCCCCCCeeE
Q 016458          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--------------DCYVWDTLLAKVVLNLGSLQNSHEGRITC  348 (389)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  348 (389)
                      +....+...      ..+..++|+|+++++++++.++              .+++||+.+++.+..+    .+|...|++
T Consensus       251 ~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~----~~~~~~v~~  320 (369)
T 3zwl_B          251 QVLKKYETD------CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV----QGHFGPLNT  320 (369)
T ss_dssp             CEEEEEECS------SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE----ECCSSCEEE
T ss_pred             ceeeeecCC------CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe----ecccCcEEE
Confidence            888877632      2489999999999999999988              8999999999999988    789999999


Q ss_pred             EEECCCCCeEEeeeCCCeeEEeecceecccCcc
Q 016458          349 LGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       349 ~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~  381 (389)
                      ++|+|++++|++++.||.|++    |+++++.+
T Consensus       321 ~~~s~~~~~l~s~~~dg~v~i----w~~~~~~~  349 (369)
T 3zwl_B          321 VAISPQGTSYASGGEDGFIRL----HHFEKSYF  349 (369)
T ss_dssp             EEECTTSSEEEEEETTSEEEE----EEECHHHH
T ss_pred             EEECCCCCEEEEEcCCCeEEE----EECccccc
Confidence            999999999999999999999    99998754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.8e-46  Score=348.32  Aligned_cols=299  Identities=26%  Similarity=0.385  Sum_probs=253.0

Q ss_pred             ceeeeecccccCcEEEEEEcCCC-CeEEEEecCCcEEEEeCCCC-----CeeEEEeeCCCcEEEEEECCCCcEEEEecCC
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTS-----QKTHAIKLPCAWVMTCAFSPTGQSVACGGLD  130 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  130 (389)
                      +.....+++|.+.|++++|+|++ ++|++|+.|++|++|++.+.     .....+.+|...|.+++|+|++++|++|+.|
T Consensus       372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D  451 (694)
T 3dm0_A          372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD  451 (694)
T ss_dssp             SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            35566899999999999999865 69999999999999998764     3456788999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  210 (389)
                      |.|++||+.++.       ....+.+|...|.+++|+|++ .+|++++.|++|++||...........  ....|...|.
T Consensus       452 g~v~vwd~~~~~-------~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~--~~~~h~~~v~  521 (694)
T 3dm0_A          452 GELRLWDLAAGV-------STRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISE--GGEGHRDWVS  521 (694)
T ss_dssp             SEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECS--STTSCSSCEE
T ss_pred             CcEEEEECCCCc-------ceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeecc--CCCCCCCcEE
Confidence            999999998754       567788999999999999997 789999999999999987654443321  1146888999


Q ss_pred             EEEeeCCC-CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEee
Q 016458          211 SVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (389)
Q Consensus       211 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (389)
                      +++|+|.. ...+++++.|+.|++||++.. .....+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+.
T Consensus       522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~  600 (694)
T 3dm0_A          522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE  600 (694)
T ss_dssp             EEEECSCSSSCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB
T ss_pred             EEEEeCCCCcceEEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec
Confidence            99999943 368999999999999999987 7788899999999999999999999999999999999999988776553


Q ss_pred             ccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCC---------------CCCCCeeEEEECCC
Q 016458          290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN---------------SHEGRITCLGLSAD  354 (389)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~  354 (389)
                      ..      ..+.+++|+|++.++++++ ++.|++||+.++..+..+.....               .+...+++++|+|+
T Consensus       601 ~~------~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd  673 (694)
T 3dm0_A          601 AN------SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD  673 (694)
T ss_dssp             CS------SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTT
T ss_pred             CC------CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCC
Confidence            32      2499999999999888775 45699999999988877642110               11124789999999


Q ss_pred             CCeEEeeeCCCeeEEeecceecc
Q 016458          355 GSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       355 ~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      |++|++|+.||.|+|    |++.
T Consensus       674 g~~l~sgs~Dg~i~i----W~i~  692 (694)
T 3dm0_A          674 GSTLFSGYTDGVIRV----WGIG  692 (694)
T ss_dssp             SSEEEEEETTSEEEE----EEC-
T ss_pred             CCEEEEEcCCCeEEE----Eecc
Confidence            999999999999999    9985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6.2e-47  Score=331.16  Aligned_cols=312  Identities=18%  Similarity=0.251  Sum_probs=259.8

Q ss_pred             ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC------eeEEEeeCCCcEEEEEECCC----C---cE
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ------KTHAIKLPCAWVMTCAFSPT----G---QS  123 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~  123 (389)
                      ....+.+.+|.++|++++|+|  ++|++|+.||.|++||+.+++      ....+..|...|.+++|+|+    +   ++
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            466778999999999999999  699999999999999999988      78888999999999999999    9   99


Q ss_pred             EEEecCCCcEEEEeCCCCCCCCCCCcceeeeccc-----ccceEEEEEe----eCCCcE-EEEeeCCCeEEEEeCCC---
Q 016458          124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-----KGYVSCCQYV----PDEDTH-LITSSGDQTCVLWDITT---  190 (389)
Q Consensus       124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~----~~~~~~-l~~~~~dg~i~iwd~~~---  190 (389)
                      |++++.||.|++|++..+...  .......+..|     ...|.+++|+    |++ .+ |++++.||.|++||+.+   
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~  160 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDET--KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFAD  160 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTT--CCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             EEEEcCCCCEEEEEccCCccc--ccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCcccc
Confidence            999999999999999875410  11115667777     5899999999    987 67 99999999999999988   


Q ss_pred             ---CeeEE-----EecC--cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee---e---ccceE
Q 016458          191 ---GLRTS-----VFGG--EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---H---EGDVN  254 (389)
Q Consensus       191 ---~~~~~-----~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~---~~~i~  254 (389)
                         +..+.     .+..  .....|...+.+++|+| ++ ++++++.||.|++||+++. ..+..+..   |   ...|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~h~~~~~~i~  237 (397)
T 1sq9_A          161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTL-RPLYNFESQHSMINNSNSIR  237 (397)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTT-EEEEEEECCC---CCCCCEE
T ss_pred             ccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCC-ceeEEEeccccccccCCccc
Confidence               54443     3310  00134788899999999 66 9999999999999999987 78888888   8   99999


Q ss_pred             EEEEecCCCEEEEEecC---CeEEEEECCCCceeeEeeccCCC--------CCCCCeeEEEeCCCCCEEEEEecCCcEEE
Q 016458          255 TVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGE--------NEIPHVTSIAFSISGRLLFAGYSNGDCYV  323 (389)
Q Consensus       255 ~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (389)
                      +++|+|++++|++++.|   |.|++||+++++.+..+......        .+...|.+++|+|++++|++++.||.|++
T Consensus       238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  317 (397)
T 1sq9_A          238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF  317 (397)
T ss_dssp             EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             eEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence            99999999999999999   99999999999888877551000        03346999999999999999999999999


Q ss_pred             EEcccceEEEeecCcC--CCC---------------CCCeeEEEECCCC----------CeEEeeeCCCeeEEeecceec
Q 016458          324 WDTLLAKVVLNLGSLQ--NSH---------------EGRITCLGLSADG----------SALCTGSWDTNLKVNLGFWRV  376 (389)
Q Consensus       324 ~d~~~~~~~~~~~~~~--~~~---------------~~~v~~~~~~~~~----------~~l~~~~~dg~i~i~~~~W~~  376 (389)
                      ||+.+++.+..+....  ..|               ...|++++|+|++          ++|++++.||.|++    |++
T Consensus       318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i----w~~  393 (397)
T 1sq9_A          318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW----FRE  393 (397)
T ss_dssp             EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE----EEE
T ss_pred             EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEE----EEc
Confidence            9999999998883100  056               8999999999998          79999999999999    999


Q ss_pred             ccCc
Q 016458          377 QEGA  380 (389)
Q Consensus       377 ~~~~  380 (389)
                      .+|+
T Consensus       394 ~~g~  397 (397)
T 1sq9_A          394 AGGK  397 (397)
T ss_dssp             EC--
T ss_pred             CCCC
Confidence            9874

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.4e-46  Score=340.42  Aligned_cols=295  Identities=27%  Similarity=0.496  Sum_probs=260.5

Q ss_pred             CCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE
Q 016458           46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA  125 (389)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  125 (389)
                      +.....|+. +.+....+.+|.+.|.+++|+|++++|++++.|++|++||.. +..+..+..|...+.+++|+|++++|+
T Consensus       283 d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~  360 (577)
T 2ymu_A          283 DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIA  360 (577)
T ss_dssp             TSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             CCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEE
Confidence            344455654 346677889999999999999999999999999999999965 556677888999999999999999999


Q ss_pred             EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCC
Q 016458          126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH  205 (389)
Q Consensus       126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  205 (389)
                      +++.||.|++|+...        .....+.+|...|.+++|+|++ ++|++++.|+.|++||. +++....+     ..|
T Consensus       361 ~~~~dg~v~~~~~~~--------~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~-~~~~~~~~-----~~~  425 (577)
T 2ymu_A          361 SASDDKTVKLWNRNG--------QLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTL-----TGH  425 (577)
T ss_dssp             EEETTSEEEEEETTC--------CEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECT-TCCEEEEE-----ECC
T ss_pred             EEeCCCEEEEEcCCC--------CEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeC-CCCEEEEe-----cCC
Confidence            999999999999643        2567788899999999999998 78999999999999996 45666666     689


Q ss_pred             CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCcee
Q 016458          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL  285 (389)
Q Consensus       206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  285 (389)
                      ...|.+++|+| ++.+|++++.|+.|++||..  .+.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+
T Consensus       426 ~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~  501 (577)
T 2ymu_A          426 SSSVWGVAFSP-DDQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLL  501 (577)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEE
T ss_pred             CCCeEEEEECC-CCCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEE
Confidence            99999999999 88899999999999999975  3677888999999999999999999999999999999995 56777


Q ss_pred             eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (389)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  365 (389)
                      ..+..+.     ..|++++|+|+|++|++++.||.|++||. +++.+..+    .+|.+.|++++|+|||++|++++.|+
T Consensus       502 ~~~~~h~-----~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~----~~h~~~v~~~~fs~dg~~l~s~~~D~  571 (577)
T 2ymu_A          502 QTLTGHS-----SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL----TGHSSSVWGVAFSPDGQTIASASSDK  571 (577)
T ss_dssp             EEEECCS-----SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE----ECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             EEEeCCC-----CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE----cCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            7765543     35999999999999999999999999996 67788888    78999999999999999999999999


Q ss_pred             eeEEeeccee
Q 016458          366 NLKVNLGFWR  375 (389)
Q Consensus       366 ~i~i~~~~W~  375 (389)
                      .|++    ||
T Consensus       572 ~i~~----Wd  577 (577)
T 2ymu_A          572 TVKL----WN  577 (577)
T ss_dssp             CEEE----EC
T ss_pred             EEEE----eC
Confidence            9999    97

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-45  Score=311.25  Aligned_cols=294  Identities=20%  Similarity=0.348  Sum_probs=261.4

Q ss_pred             cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEE
Q 016458           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI  135 (389)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  135 (389)
                      ..+..+.+.+|.+.|++++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~   85 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING   85 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence            45788899999999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (389)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  215 (389)
                      |++.....    ......+..|...|.++.|.  + .++++++.||.|++||  .+.....+     ..|...+.++.+.
T Consensus        86 ~~~~~~~~----~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~~~~~-----~~~~~~v~~~~~~  151 (313)
T 3odt_A           86 VPLFATSG----EDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSLVYNL-----QAHNASVWDAKVV  151 (313)
T ss_dssp             EETTCCTT----SCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEEEEEE-----ECCSSCEEEEEEE
T ss_pred             EEeeecCC----CCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcEEEec-----ccCCCceeEEEEc
Confidence            99987431    22456678899999999993  3 6899999999999999  66666666     6789999999999


Q ss_pred             CCCCcEEEEeeCCCceEEEeCCCCCcceeEEee-eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCC
Q 016458          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE  294 (389)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  294 (389)
                      |.+++++++++.||.|++||..   .....+.. |...+.+++|+|++. +++++.||.|++||+++++.+..+..+.. 
T Consensus       152 ~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~-  226 (313)
T 3odt_A          152 SFSENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES-  226 (313)
T ss_dssp             ETTTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS-
T ss_pred             cCCCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc-
Confidence            8788999999999999999943   55666766 899999999999988 99999999999999999998888765443 


Q ss_pred             CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecce
Q 016458          295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFW  374 (389)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W  374 (389)
                          .|++++|+|++ .|++++.||.|++||+.+++....+    ..|...|.+++|+|+++ +++++.||.|++    |
T Consensus       227 ----~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i----w  292 (313)
T 3odt_A          227 ----FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI----TLPAISIWSVDCMSNGD-IIVGSSDNLVRI----F  292 (313)
T ss_dssp             ----CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE----ECSSSCEEEEEECTTSC-EEEEETTSCEEE----E
T ss_pred             ----eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE----eccCceEEEEEEccCCC-EEEEeCCCcEEE----E
Confidence                59999999999 5889999999999999999999888    78889999999999998 667999999999    9


Q ss_pred             ecccCcccC
Q 016458          375 RVQEGALSP  383 (389)
Q Consensus       375 ~~~~~~~~~  383 (389)
                      ++.++++..
T Consensus       293 ~~~~~~~~~  301 (313)
T 3odt_A          293 SQEKSRWAS  301 (313)
T ss_dssp             ESCGGGCCC
T ss_pred             eCCCCceee
Confidence            999987654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=9.4e-47  Score=330.33  Aligned_cols=264  Identities=20%  Similarity=0.325  Sum_probs=241.2

Q ss_pred             CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458           45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV  124 (389)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  124 (389)
                      .+.....|+.......+.+.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|
T Consensus       128 ~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l  207 (410)
T 1vyh_C          128 EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI  207 (410)
T ss_dssp             SSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEE
T ss_pred             CCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEE
Confidence            34556678888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC
Q 016458          125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG  204 (389)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  204 (389)
                      ++|+.|+.|++||+.++.       ....+.+|...|.++.++|++ .++++|+.|+.|++||+.++.....+     ..
T Consensus       208 ~s~s~D~~i~~wd~~~~~-------~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~~~~-----~~  274 (410)
T 1vyh_C          208 VSASRDKTIKMWEVQTGY-------CVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAEL-----RE  274 (410)
T ss_dssp             EEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEE-----CC
T ss_pred             EEEeCCCeEEEEECCCCc-------EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeEe-----cC
Confidence            999999999999998754       667888999999999999997 78999999999999999999988888     78


Q ss_pred             CCCCeeEEEeeCCC-------------------CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEE
Q 016458          205 HTADVLSVSISGSN-------------------SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF  265 (389)
Q Consensus       205 ~~~~v~~~~~~~~~-------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  265 (389)
                      |...|.+++|+|..                   +.+|++|+.|+.|++||++++ ..+..+.+|...|.+++|+|++++|
T Consensus       275 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l  353 (410)
T 1vyh_C          275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFI  353 (410)
T ss_dssp             CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSCE
T ss_pred             CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-ceEEEEECCCCcEEEEEEcCCCCEE
Confidence            99999999999842                   568999999999999999987 7888899999999999999999999


Q ss_pred             EEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      ++++.||.|++||+.+++.+..+..+..     .|++++|+|++++|++|+.||.|++|+++
T Consensus       354 ~s~s~D~~i~vwd~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          354 LSCADDKTLRVWDYKNKRCMKTLNAHEH-----FVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEETTTEEEEECCTTSCCCEEEECCSS-----CEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEeCCCeEEEEECCCCceEEEEcCCCC-----cEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            9999999999999999988888765443     49999999999999999999999999863

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-45  Score=322.56  Aligned_cols=301  Identities=16%  Similarity=0.233  Sum_probs=253.4

Q ss_pred             cCCCcceeeeecccccCcEEEEEEcCCCC-eEEEEecCCcEEEEeC----CCCC------eeEEEee----------CCC
Q 016458           52 FGPTDLVCCRTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNA----LTSQ------KTHAIKL----------PCA  110 (389)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~----~~~~------~~~~~~~----------~~~  110 (389)
                      |+............|.++|++++|+|+++ +||+|+.||.|++|++    .+++      ....+..          |..
T Consensus        30 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (425)
T 1r5m_A           30 DDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTN  109 (425)
T ss_dssp             ----CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CB
T ss_pred             ccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCC
Confidence            43333344444456679999999999999 9999999999999999    8888      4555554          567


Q ss_pred             cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC
Q 016458          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT  190 (389)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  190 (389)
                      .|.+++|+|++++|++++.||.|++|+...        .....+..|...|.+++|+|++ .+|++++.||.|++||+.+
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~  180 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKTG--------ALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVIS  180 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTS--------CEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTT
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------CeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCC
Confidence            899999999999999999999999999332        2567788899999999999997 6899999999999999998


Q ss_pred             CeeEEEecCcc---------------------------------------------------cCCCCCCeeEEEeeCCCC
Q 016458          191 GLRTSVFGGEF---------------------------------------------------QSGHTADVLSVSISGSNS  219 (389)
Q Consensus       191 ~~~~~~~~~~~---------------------------------------------------~~~~~~~v~~~~~~~~~~  219 (389)
                      +.....+....                                                   ...|...|.+++|+| ++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~  259 (425)
T 1r5m_A          181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TN  259 (425)
T ss_dssp             TEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TT
T ss_pred             CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CC
Confidence            87665443211                                                   125678899999999 78


Q ss_pred             cEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458          220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (389)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (389)
                      .+|++++.||.|++||++.. .....+..|...|.+++|+|++ ++++++.||.|++||+++++.+..+..+..     .
T Consensus       260 ~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~  332 (425)
T 1r5m_A          260 KLLLSASDDGTLRIWHGGNG-NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV-----P  332 (425)
T ss_dssp             TEEEEEETTSCEEEECSSSB-SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC-----C
T ss_pred             CEEEEEcCCCEEEEEECCCC-ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc-----c
Confidence            89999999999999999987 7788888899999999999999 999999999999999999988877765443     4


Q ss_pred             eeEEEeCCCCCEEEEEecCCcEEEEEcccce--------------------EEEeecCcCCCCCC--CeeEEEECCCCCe
Q 016458          300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--------------------VVLNLGSLQNSHEG--RITCLGLSADGSA  357 (389)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------------~~~~~~~~~~~~~~--~v~~~~~~~~~~~  357 (389)
                      +.+++|+|++++|++++.||.|++||+.+++                    .+..+    ..|..  .|++++|+|++++
T Consensus       333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~  408 (425)
T 1r5m_A          333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY----QSSQDNDYIFDLSWNCAGNK  408 (425)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE----CCTTCCCCEEEEEECTTSSE
T ss_pred             EEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh----cCcccCCceEEEEccCCCce
Confidence            9999999999999999999999999999888                    77777    67766  9999999999999


Q ss_pred             EEeeeCCCeeEEeecceecc
Q 016458          358 LCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       358 l~~~~~dg~i~i~~~~W~~~  377 (389)
                      |++++.||.|++    |+++
T Consensus       409 l~~~~~dg~i~i----w~~~  424 (425)
T 1r5m_A          409 ISVAYSLQEGSV----VAIP  424 (425)
T ss_dssp             EEEEESSSCCEE----EECC
T ss_pred             EEEEecCceEEE----Eeec
Confidence            999999999999    9985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.5e-45  Score=320.78  Aligned_cols=302  Identities=17%  Similarity=0.256  Sum_probs=248.7

Q ss_pred             CcceeeeecccccCcEEEEEEcCCC-CeEEEEecCCcEEEEeCCCCCeeEEEe--eCCCcEEEEEECC-CCcEEEEecCC
Q 016458           55 TDLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSP-TGQSVACGGLD  130 (389)
Q Consensus        55 ~~~~~~~~l~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d  130 (389)
                      ......+.+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+.  .|...|.+++|+| ++++|++++.|
T Consensus        61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  140 (383)
T 3ei3_B           61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR  140 (383)
T ss_dssp             TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred             cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence            4567788999999999999999999 899999999999999999988887776  5889999999999 78999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  210 (389)
                      +.|++||+....     .........|...|.+++|+|++ .+|++++.|+.|++||+ ++.....+     ..|...|.
T Consensus       141 ~~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~-~~~~~~~~-----~~h~~~v~  208 (383)
T 3ei3_B          141 GATTLRDFSGSV-----IQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGL-DGHEIFKE-----KLHKAKVT  208 (383)
T ss_dssp             TEEEEEETTSCE-----EEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEET-TSCEEEEE-----ECSSSCEE
T ss_pred             CEEEEEECCCCc-----eEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEEC-CCCEEEEe-----ccCCCcEE
Confidence            999999998522     11222223445889999999997 78999999999999999 46666666     68999999


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEeCCCCC---cceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceee
Q 016458          211 SVSISGSNSRMFVSGSCDSTARLWDTRVAS---RAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQ  286 (389)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  286 (389)
                      +++|+|.+..++++++.|+.|++||+++..   ..+..+ +|...|.+++|+| ++++|++++.|+.|++||++++....
T Consensus       209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~  287 (383)
T 3ei3_B          209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD  287 (383)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred             EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence            999999444499999999999999999732   344444 7999999999999 99999999999999999999888766


Q ss_pred             EeeccCCC--CCC----------CCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458          287 VYYQQHGE--NEI----------PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (389)
Q Consensus       287 ~~~~~~~~--~~~----------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (389)
                      .+..+...  .+.          ..+..++|+|++++  +++.||.|++||+.+++.+..+..  ..|...+.+++|+|+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~--~~~~~~~~~~~~s~~  363 (383)
T 3ei3_B          288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD--PNAAGIISLNKFSPT  363 (383)
T ss_dssp             EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB--TTBCSCCCEEEECTT
T ss_pred             ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC--CCCCceEEEEEEecC
Confidence            66533211  111          23445666777766  677899999999999999888842  235678888899999


Q ss_pred             CCeEEeeeCCCeeEEeecceeccc
Q 016458          355 GSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       355 ~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      +++|++|+ ||.|++    |++++
T Consensus       364 g~~l~s~s-d~~i~i----w~~~~  382 (383)
T 3ei3_B          364 GDVLASGM-GFNILI----WNRED  382 (383)
T ss_dssp             SSEEEEEE-TTEEEE----EECC-
T ss_pred             ccEEEEec-CCcEEE----EecCC
Confidence            99999997 999999    99875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.3e-44  Score=309.37  Aligned_cols=293  Identities=18%  Similarity=0.342  Sum_probs=252.9

Q ss_pred             CcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee---EEEe--eCCCcEEEEEECCCCcEEEEecC
Q 016458           55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT---HAIK--LPCAWVMTCAFSPTGQSVACGGL  129 (389)
Q Consensus        55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~~~~~  129 (389)
                      ..........+|.+.|++++|+|++++|++++ ||.|++||+.++...   ..+.  .|...|.+++|+|++++|++++.
T Consensus        39 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  117 (337)
T 1gxr_A           39 PRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE  117 (337)
T ss_dssp             CSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES
T ss_pred             CCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC
Confidence            33333444458999999999999999999998 999999999876533   3333  67889999999999999999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCe
Q 016458          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV  209 (389)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  209 (389)
                      ||.|++|++..+.     ......+..|...|.+++|+|++ .++++++.||.|++||+.+++....+     ..|...+
T Consensus       118 d~~i~~~d~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~-----~~~~~~i  186 (337)
T 1gxr_A          118 ASTLSIWDLAAPT-----PRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQF-----QGHTDGA  186 (337)
T ss_dssp             SSEEEEEECCCC-------EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCE
T ss_pred             CCcEEEEECCCCC-----cceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeee-----ecccCce
Confidence            9999999998743     22456677899999999999987 78999999999999999999988888     6789999


Q ss_pred             eEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEee
Q 016458          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (389)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (389)
                      .+++|+| +++++++++.||.|++||+++. ..+..+ .+...+.+++|+|++++|++++.||.|++||+++++... +.
T Consensus       187 ~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~-~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~  262 (337)
T 1gxr_A          187 SCIDISN-DGTKLWTGGLDNTVRSWDLREG-RQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LH  262 (337)
T ss_dssp             EEEEECT-TSSEEEEEETTSEEEEEETTTT-EEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-EC
T ss_pred             EEEEECC-CCCEEEEEecCCcEEEEECCCC-ceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-Ec
Confidence            9999999 8889999999999999999977 555554 478889999999999999999999999999999876543 22


Q ss_pred             ccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      .     +...+.+++|+|++++|++++.||.|++||+.+++.....     .|...|.+++|+|++++|++++.||.|++
T Consensus       263 ~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  332 (337)
T 1gxr_A          263 L-----HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----KESSSVLSCDISVDDKYIVTGSGDKKATV  332 (337)
T ss_dssp             C-----CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----ECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             C-----CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-----cCCCcEEEEEECCCCCEEEEecCCCeEEE
Confidence            2     3345999999999999999999999999999998887554     57889999999999999999999999999


Q ss_pred             eecceecc
Q 016458          370 NLGFWRVQ  377 (389)
Q Consensus       370 ~~~~W~~~  377 (389)
                          |++.
T Consensus       333 ----w~~~  336 (337)
T 1gxr_A          333 ----YEVI  336 (337)
T ss_dssp             ----EEEE
T ss_pred             ----EEEe
Confidence                9973

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.6e-45  Score=308.44  Aligned_cols=257  Identities=19%  Similarity=0.273  Sum_probs=232.1

Q ss_pred             CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC
Q 016458          100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG  179 (389)
Q Consensus       100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  179 (389)
                      +...++..|...|.+++|+|++++|++++.||.|++||+.++.       ....+..|..+|.+++|+|++ ++|++|+.
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~   75 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-------EVRSIQVTETPVRAGKFIARK-NWIIVGSD   75 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGG-TEEEEEET
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-------eeEEeeccCCcEEEEEEeCCC-CEEEEECC
Confidence            4566788999999999999999999999999999999998754       567788899999999999997 78999999


Q ss_pred             CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEe
Q 016458          180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF  259 (389)
Q Consensus       180 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~  259 (389)
                      |+.|++||+.+++.+..+     ..|...|.+++|+| ++.+|++|+.|+.|++||++........+.+|...|.+++|+
T Consensus        76 d~~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~  149 (304)
T 2ynn_A           76 DFRIRVFNYNTGEKVVDF-----EAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN  149 (304)
T ss_dssp             TSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEEC
T ss_pred             CCEEEEEECCCCcEEEEE-----eCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEEC
Confidence            999999999999999888     78999999999999 888999999999999999987756667788999999999999


Q ss_pred             c-CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC--CCCEEEEEecCCcEEEEEcccceEEEeec
Q 016458          260 P-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI--SGRLLFAGYSNGDCYVWDTLLAKVVLNLG  336 (389)
Q Consensus       260 ~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  336 (389)
                      | ++.+|++|+.|+.|++||++.......+...+.    ..+..+.|+|  ++++|++|+.|+.|++||+.+++.+..+ 
T Consensus       150 p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-  224 (304)
T 2ynn_A          150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE----RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-  224 (304)
T ss_dssp             TTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCT----TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCccceeccCCc----CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-
Confidence            9 678999999999999999988777666544332    2488888876  7789999999999999999999999998 


Q ss_pred             CcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          337 SLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       337 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                         .+|...|.+++|+|++.+|++|+.||.|++    ||+.++++.
T Consensus       225 ---~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~i----Wd~~~~~~~  263 (304)
T 2ynn_A          225 ---EGHMSNVSFAVFHPTLPIIISGSEDGTLKI----WNSSTYKVE  263 (304)
T ss_dssp             ---ECCSSCEEEEEECSSSSEEEEEETTSCEEE----EETTTCCEE
T ss_pred             ---CCCCCCEEEEEECCCCCEEEEEcCCCeEEE----EECCCCcee
Confidence               799999999999999999999999999999    999988754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-46  Score=330.80  Aligned_cols=326  Identities=14%  Similarity=0.148  Sum_probs=267.7

Q ss_pred             cCCCCCcccCCCcce---eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC----CCeeEEEeeCCCcEEEEE
Q 016458           44 SQGRAPVSFGPTDLV---CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT----SQKTHAIKLPCAWVMTCA  116 (389)
Q Consensus        44 ~~~~~~~~~~~~~~~---~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~~~  116 (389)
                      ..+.....|+.....   +...+ .|...|++++|+|++++|++++.||.|++||+.+    .+....+..|...|.+++
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~  120 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK  120 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE
T ss_pred             CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE
Confidence            344556677776553   33333 6899999999999999999999999999999987    457888889999999999


Q ss_pred             ECCC-CcEEEEecCCCcEEEEeCCCCCCCCC--CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee
Q 016458          117 FSPT-GQSVACGGLDSVCSIFNLNSPTDKDG--NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR  193 (389)
Q Consensus       117 ~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  193 (389)
                      |+|+ +++|++++.||.|++||+........  ..........|...|.+++|+|++..++++++.||.|++||+.+++.
T Consensus       121 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  200 (416)
T 2pm9_A          121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE  200 (416)
T ss_dssp             ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred             EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence            9998 89999999999999999987541110  11112334678999999999999668999999999999999999998


Q ss_pred             EEEecCcc-cCCCCCCeeEEEeeCCCCcEEEEeeCCC---ceEEEeCCCCCcceeEEe-eeccceEEEEEec-CCCEEEE
Q 016458          194 TSVFGGEF-QSGHTADVLSVSISGSNSRMFVSGSCDS---TARLWDTRVASRAVRTFH-GHEGDVNTVKFFP-DGNRFGT  267 (389)
Q Consensus       194 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~  267 (389)
                      ...+.... ...|...+.+++|+|.+..++++++.|+   .|++||++....+...+. +|...|.+++|+| ++++|++
T Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s  280 (416)
T 2pm9_A          201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS  280 (416)
T ss_dssp             EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred             ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE
Confidence            88873210 0112788999999995568999999998   999999998756777787 8999999999999 9999999


Q ss_pred             EecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC-CEEEEEecCCcEEEEEcccceEEEeec----------
Q 016458          268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLG----------  336 (389)
Q Consensus       268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~----------  336 (389)
                      ++.||.|++||+++++.+..+..+..     .|.+++|+|++ .+|++++.||.|++||+.+........          
T Consensus       281 ~~~dg~v~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  355 (416)
T 2pm9_A          281 SGRDNTVLLWNPESAEQLSQFPARGN-----WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESE  355 (416)
T ss_dssp             EESSSEEEEECSSSCCEEEEEECSSS-----CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----------
T ss_pred             EeCCCCEEEeeCCCCccceeecCCCC-----ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCc
Confidence            99999999999999988888765443     49999999999 899999999999999998765332210          


Q ss_pred             ---------------------CcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          337 ---------------------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       337 ---------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                                           .....|..++++++|+|+|++|++++.||.|+|    |++.++
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~----w~~~~~  415 (416)
T 2pm9_A          356 TDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSI----TNPKIS  415 (416)
T ss_dssp             -----------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCC----BCCCCC
T ss_pred             ccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEE----EEeccC
Confidence                                 001126778889999999999999999999999    999875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.2e-44  Score=332.02  Aligned_cols=301  Identities=26%  Similarity=0.456  Sum_probs=264.4

Q ss_pred             CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458           45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV  124 (389)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  124 (389)
                      .+.....|+. ..+....+.+|...|++++|+|+++.|++++.|+.|++||. +++....+..|...|.+++|+|+++.+
T Consensus       241 ~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l  318 (577)
T 2ymu_A          241 DDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTI  318 (577)
T ss_dssp             TTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEE
Confidence            3445566764 34677889999999999999999999999999999999995 567788889999999999999999999


Q ss_pred             EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC
Q 016458          125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG  204 (389)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  204 (389)
                      ++++.|+.|++|+....        ....+.+|...+.+++|+|++ .++++++.|+.|++||. +++....+     ..
T Consensus       319 ~t~~~d~~i~~w~~~~~--------~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~-~~~~~~~~-----~~  383 (577)
T 2ymu_A          319 ASASDDKTVKLWNRNGQ--------HLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTL-----TG  383 (577)
T ss_dssp             EEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEET-TCCEEEEE-----EC
T ss_pred             EEEeCCCeEEEEeCCCC--------eeEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcC-CCCEEEEe-----cC
Confidence            99999999999998653        355678899999999999998 78999999999999996 45666666     67


Q ss_pred             CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458          205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ  284 (389)
Q Consensus       205 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  284 (389)
                      |...|.+++|+| ++++|++++.|+.|++||..  .+.+..+.+|...|.+++|+|++++|++++.|+.|++||.. ++.
T Consensus       384 ~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~  459 (577)
T 2ymu_A          384 HSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQL  459 (577)
T ss_dssp             CSSCEEEEEECT-TSSCEEEEETTSEEEEECTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCE
T ss_pred             CCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCC--CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCE
Confidence            899999999999 88899999999999999964  36788889999999999999999999999999999999964 566


Q ss_pred             eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC
Q 016458          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  364 (389)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  364 (389)
                      +..+..+.     ..|++++|+|++++|++++.|+.|++||. +++.+..+    .+|...|++++|+|+|++|++++.|
T Consensus       460 ~~~~~~~~-----~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~----~~h~~~v~~l~~s~dg~~l~s~~~d  529 (577)
T 2ymu_A          460 LQTLTGHS-----SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL----TGHSSSVRGVAFSPDGQTIASASDD  529 (577)
T ss_dssp             EEEEECCS-----SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE----ECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             EEEEcCCC-----CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE----eCCCCCEEEEEEcCCCCEEEEEECc
Confidence            66655433     35999999999999999999999999995 67788888    7899999999999999999999999


Q ss_pred             CeeEEeecceecccCc
Q 016458          365 TNLKVNLGFWRVQEGA  380 (389)
Q Consensus       365 g~i~i~~~~W~~~~~~  380 (389)
                      |.|++    ||.....
T Consensus       530 g~v~l----wd~~~~~  541 (577)
T 2ymu_A          530 KTVKL----WNRNGQL  541 (577)
T ss_dssp             SEEEE----ECTTSCE
T ss_pred             CEEEE----EeCCCCE
Confidence            99999    9975433

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.2e-45  Score=309.77  Aligned_cols=266  Identities=23%  Similarity=0.331  Sum_probs=240.6

Q ss_pred             cccCCCCCcccCCCc--ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECC
Q 016458           42 SRSQGRAPVSFGPTD--LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP  119 (389)
Q Consensus        42 ~~~~~~~~~~~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~  119 (389)
                      ..+.+.....|+...  ......+.+|...|.+++|++++.++++++.|++|++||+.+++.+..+..+...+.+++|+|
T Consensus        53 tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp  132 (321)
T 3ow8_A           53 TGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP  132 (321)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECT
T ss_pred             EEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECC
Confidence            345556667776543  345567999999999999999999999999999999999999999999999988999999999


Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC
Q 016458          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG  199 (389)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  199 (389)
                      ++++|++|+.||.|++|++..+.       ....+..|...|.+++|+|++ ++|++|+.||.|++||+.+++.+..+  
T Consensus       133 dg~~l~~g~~dg~v~i~~~~~~~-------~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~--  202 (321)
T 3ow8_A          133 DSQYLATGTHVGKVNIFGVESGK-------KEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTL--  202 (321)
T ss_dssp             TSSEEEEECTTSEEEEEETTTCS-------EEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE--
T ss_pred             CCCEEEEEcCCCcEEEEEcCCCc-------eeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEE--
Confidence            99999999999999999998755       456677888999999999998 78999999999999999999998888  


Q ss_pred             cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEEC
Q 016458          200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI  279 (389)
Q Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  279 (389)
                         ..|...|.+++|+| ++.+|++++.|+.|++||++.. .....+.+|...|.+++|+|++.+|++++.|+.|++||+
T Consensus       203 ---~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~  277 (321)
T 3ow8_A          203 ---EGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV  277 (321)
T ss_dssp             ---CCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ---cccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCc-ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence               78999999999999 8899999999999999999987 778889999999999999999999999999999999999


Q ss_pred             CCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      ++++.+..+..+..     .|.+++|+|++++|++++.||.|++||..
T Consensus       278 ~~~~~~~~~~~h~~-----~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          278 GTRTCVHTFFDHQD-----QVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCCEEEEEEcCCCC-----cEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            99998888755433     59999999999999999999999999963

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.8e-45  Score=319.08  Aligned_cols=298  Identities=17%  Similarity=0.267  Sum_probs=253.1

Q ss_pred             cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458           63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS  140 (389)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~  140 (389)
                      +..|.++|++++|+|++++|++++.|+.|++||+.+++  .+..+..|...|.+++|+|++++|++++.||.|++||+..
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            45599999999999999999999999999999999887  8888899999999999999999999999999999999976


Q ss_pred             CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee---EEEecCcccCCCCCCeeEEEeeCC
Q 016458          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR---TSVFGGEFQSGHTADVLSVSISGS  217 (389)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~  217 (389)
                      +.     ......+..|...|.+++|+|++ .++++++.|+.|++||+..+..   ...+.    ..|...|.+++|+| 
T Consensus        84 ~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~----~~~~~~i~~~~~~~-  152 (372)
T 1k8k_C           84 RT-----WKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIK----KPIRSTVLSLDWHP-  152 (372)
T ss_dssp             TE-----EEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEEC----TTCCSCEEEEEECT-
T ss_pred             Ce-----eeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeee----cccCCCeeEEEEcC-
Confidence            43     11233446789999999999997 7899999999999999988763   22221    56789999999999 


Q ss_pred             CCcEEEEeeCCCceEEEeCCC-----------------CCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458          218 NSRMFVSGSCDSTARLWDTRV-----------------ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR  280 (389)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~-----------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  280 (389)
                      ++++|++++.||.|++||++.                 ....+..+..|...|.+++|+|++++|++++.||.|++||++
T Consensus       153 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  232 (372)
T 1k8k_C          153 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD  232 (372)
T ss_dssp             TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            888999999999999999641                 226677777899999999999999999999999999999999


Q ss_pred             CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc--ceEEE--ee---------------------
Q 016458          281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL--AKVVL--NL---------------------  335 (389)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~--~~---------------------  335 (389)
                      +++.+..+..+..     ++.+++|+|+++++++| .|+.|++|++..  +....  .+                     
T Consensus       233 ~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (372)
T 1k8k_C          233 KKMAVATLASETL-----PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD  306 (372)
T ss_dssp             GTTEEEEEECSSC-----CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCC
T ss_pred             CCceeEEEccCCC-----CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcc
Confidence            9998888765433     49999999999988888 999999999987  43110  00                     


Q ss_pred             ------------cCcCCCCCCCeeEEEEC-CCC---CeEEeeeCCCeeEEeecceecccCcc
Q 016458          336 ------------GSLQNSHEGRITCLGLS-ADG---SALCTGSWDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       336 ------------~~~~~~~~~~v~~~~~~-~~~---~~l~~~~~dg~i~i~~~~W~~~~~~~  381 (389)
                                  .....+|..+|++++|. ++|   .+|++|+.||.|++    |++.+++.
T Consensus       307 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~----W~~~~~~~  364 (372)
T 1k8k_C          307 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSI----WDVRSLES  364 (372)
T ss_dssp             CCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEE----EEHHHHHH
T ss_pred             cccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEE----EEecChhH
Confidence                        11224899999999976 676   99999999999999    99988653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.9e-46  Score=327.78  Aligned_cols=305  Identities=15%  Similarity=0.201  Sum_probs=238.9

Q ss_pred             eeeeecccccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCeeEE--EeeCCCcEEEEEECC-CCcEEEEecCCCcE
Q 016458           58 VCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHA--IKLPCAWVMTCAFSP-TGQSVACGGLDSVC  133 (389)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i  133 (389)
                      .......+|...|+||+|+| ++++||+|+.||+|+|||+.+++....  +.+|.+.|++++|+| ++++|++|+.||+|
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v  189 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT  189 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred             eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence            34445667999999999999 567999999999999999988765544  457889999999998 68999999999999


Q ss_pred             EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (389)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  213 (389)
                      ++||++...     .........+...+.+++|+|++ .+|++|+.||.|++||++.. .+..+     ..|...|.+++
T Consensus       190 ~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~-~~~~~-----~~h~~~v~~v~  257 (435)
T 4e54_B          190 RLQDFKGNI-----LRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGK-ELWNL-----RMHKKKVTHVA  257 (435)
T ss_dssp             EEEETTSCE-----EEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSC-BCCCS-----BCCSSCEEEEE
T ss_pred             EEeeccCCc-----eeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcc-eeEEE-----ecccceEEeee
Confidence            999997632     11122222344567899999997 78999999999999998754 34444     68999999999


Q ss_pred             eeCCCCcEEEEeeCCCceEEEeCCCCCc--ceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeecc
Q 016458          214 ISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ  291 (389)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  291 (389)
                      |+|....++++++.|+.|++||++....  .+....+|...|.+++|+|++.+|++++.||.|++||+.++.....+..+
T Consensus       258 ~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~  337 (435)
T 4e54_B          258 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPH  337 (435)
T ss_dssp             ECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCC
T ss_pred             ecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecc
Confidence            9996677999999999999999987632  23334679999999999999999999999999999999998877666443


Q ss_pred             CCC-CCCCCeeEEEeCCCCCEEEEEe------------cCCcEEEEEcccceEEEeecCcCCCCCCCeeEE-EECCCCCe
Q 016458          292 HGE-NEIPHVTSIAFSISGRLLFAGY------------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL-GLSADGSA  357 (389)
Q Consensus       292 ~~~-~~~~~i~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~  357 (389)
                      ... .....+....|+|++.+++++.            .++.|++||..+++.+..+.   .+|...|.++ +|+|+|++
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~---~~~~~~v~s~~~fspdg~~  414 (435)
T 4e54_B          338 PHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY---DPESSGISSLNEFNPMGDT  414 (435)
T ss_dssp             CCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC---CSSCCCCCCEEEECTTSSC
T ss_pred             cccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe---CCCCCcEEEEEEECCCCCE
Confidence            221 1111234456777777666654            23579999999999988874   5788889887 69999999


Q ss_pred             EEeeeCCCeeEEeecceecccCccc
Q 016458          358 LCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       358 l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      |++|+ |+.|+|    |++++|+..
T Consensus       415 lasg~-d~~i~i----W~~~~gk~r  434 (435)
T 4e54_B          415 LASAM-GYHILI----WSQQEARTR  434 (435)
T ss_dssp             EEEEC-SSEEEE----CCCC-----
T ss_pred             EEEEc-CCcEEE----EECCcCeee
Confidence            99876 889999    999999764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.5e-44  Score=317.04  Aligned_cols=311  Identities=20%  Similarity=0.272  Sum_probs=255.7

Q ss_pred             cCCCcceeeeecccccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCeeEEEe-------------eCCCcEEEEEE
Q 016458           52 FGPTDLVCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIK-------------LPCAWVMTCAF  117 (389)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-------------~~~~~v~~~~~  117 (389)
                      |+.........+.+|.++|++++|+| ++++|++|+.||.|++||+.++.....+.             .|...|.+++|
T Consensus        28 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  107 (408)
T 4a11_B           28 LGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQW  107 (408)
T ss_dssp             HTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEE
T ss_pred             eccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEE
Confidence            33444455667889999999999999 99999999999999999999887665554             48889999999


Q ss_pred             CC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCC--cEEEEeeCCCeEEEEeCCCCeeE
Q 016458          118 SP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED--THLITSSGDQTCVLWDITTGLRT  194 (389)
Q Consensus       118 ~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~  194 (389)
                      +| ++.+|++++.||.|++||+.++.       ....+ .+...+.++.+++.+.  .++++++.||.|++||+.++...
T Consensus       108 ~~~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  179 (408)
T 4a11_B          108 YPHDTGMFTSSSFDKTLKVWDTNTLQ-------TADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS  179 (408)
T ss_dssp             CTTCTTCEEEEETTSEEEEEETTTTE-------EEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred             ccCCCcEEEEEeCCCeEEEeeCCCCc-------cceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence            99 78899999999999999998744       33333 3678899999998642  48999999999999999999888


Q ss_pred             EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE---------------eeeccceEEEEEe
Q 016458          195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---------------HGHEGDVNTVKFF  259 (389)
Q Consensus       195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------~~~~~~i~~~~~~  259 (389)
                      ..+     ..|...|.+++|+|....++++++.||.|++||++.....+..+               ..|...|.+++|+
T Consensus       180 ~~~-----~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  254 (408)
T 4a11_B          180 HIL-----QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT  254 (408)
T ss_dssp             EEE-----CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred             eee-----cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence            888     68999999999999555579999999999999998775455554               5788999999999


Q ss_pred             cCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC
Q 016458          260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ  339 (389)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  339 (389)
                      |++++|++++.||.|++||+++++................+........+..+++++.++.|++||+.+++.+..+    
T Consensus       255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~----  330 (408)
T 4a11_B          255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML----  330 (408)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE----
T ss_pred             CCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee----
Confidence            9999999999999999999999877655443322222222333333444566777788999999999999999999    


Q ss_pred             CCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          340 NSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       340 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      .+|...|++++|+|++++|++++.||.|++    |++.+++..+
T Consensus       331 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i----w~~~~~~~~~  370 (408)
T 4a11_B          331 KGHYKTVDCCVFQSNFQELYSGSRDCNILA----WVPSLYEPVP  370 (408)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEE----EEECC-----
T ss_pred             ccCCCeEEEEEEcCCCCEEEEECCCCeEEE----EeCCCCCccC
Confidence            789999999999999999999999999999    9999987664

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.3e-44  Score=308.29  Aligned_cols=249  Identities=20%  Similarity=0.238  Sum_probs=213.3

Q ss_pred             cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEE----eeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI----KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS  140 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~  140 (389)
                      .|...|.+++|+|++ .|++|+.||+|+|||+.+++.....    .+|...|++++|+|++++|++|+.|+.|++||+.+
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            456789999999985 7889999999999999998866543    47889999999999999999999999999999987


Q ss_pred             CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (389)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (389)
                      +.       ....+.+|...|.+++|++++..+|++++.|+.|++||+++++....+..   ..+...+.+++|+|.+++
T Consensus       159 ~~-------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~  228 (344)
T 4gqb_B          159 QV-------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---SAPGYLPTSLAWHPQQSE  228 (344)
T ss_dssp             TE-------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------CCCEEEEEECSSCTT
T ss_pred             Cc-------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec---ceeeccceeeeecCCCCc
Confidence            55       67888999999999999999877899999999999999999988877632   345567899999998888


Q ss_pred             EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC-CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458          221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (389)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (389)
                      +|++|+.||.|++||+++. +++..+.+|...|++++|+|++ ++|++|+.|+.|++||+++++... +.     .|...
T Consensus       229 ~l~sg~~dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-----~H~~~  301 (344)
T 4gqb_B          229 VFVFGDENGTVSLVDTKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-----AHRDF  301 (344)
T ss_dssp             EEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-----CCSSC
T ss_pred             ceEEeccCCcEEEEECCCC-cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-----CCCCC
Confidence            9999999999999999987 7888999999999999999987 579999999999999999876543 32     34446


Q ss_pred             eeEEEeCCCCC-EEEEEecCCcEEEEEcccceE
Q 016458          300 VTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKV  331 (389)
Q Consensus       300 i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~  331 (389)
                      |++++|+|+++ +|++++.||.|++|++.+...
T Consensus       302 V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          302 VRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             EEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            99999999986 677899999999999976543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=7.3e-44  Score=304.51  Aligned_cols=302  Identities=19%  Similarity=0.338  Sum_probs=250.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhcccc--------------------------cccccccCCCCCcc
Q 016458            3 SSVSELKERHAAAIETVNSLRERLKQ-----KRQQLLDVD--------------------------VAGYSRSQGRAPVS   51 (389)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--------------------------~~~~~~~~~~~~~~   51 (389)
                      +.+++++++.+++++++++.++....     .........                          ......+.+.....
T Consensus         2 ~e~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~i   81 (340)
T 1got_B            2 SELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLII   81 (340)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCCCCCCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcccchhHHhhcCCCccccccchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence            56788888888888888877666332     111100000                          00112223444567


Q ss_pred             cCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC----eeEEEeeCCCcEEEEEECCCCcEEEEe
Q 016458           52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ----KTHAIKLPCAWVMTCAFSPTGQSVACG  127 (389)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~  127 (389)
                      |+.........+..|...|.+++|+|++++|++|+.|+.|++|++.+..    ....+..|...|.++.|++++. ++++
T Consensus        82 Wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~  160 (340)
T 1got_B           82 WDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTS  160 (340)
T ss_dssp             EETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEE
T ss_pred             EECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEE
Confidence            7777788888999999999999999999999999999999999998763    4556778999999999998876 8889


Q ss_pred             cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458          128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (389)
Q Consensus       128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  207 (389)
                      +.|+.|++||+.++.       ....+.+|.+.|.+++|+|++ .++++|+.|+.|++||++++.....+     ..|..
T Consensus       161 s~d~~i~~wd~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~-----~~h~~  227 (340)
T 1got_B          161 SGDTTCALWDIETGQ-------QTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTF-----TGHES  227 (340)
T ss_dssp             ETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEE-----CCCSS
T ss_pred             ECCCcEEEEECCCCc-------EEEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeEEEE-----cCCcC
Confidence            999999999998754       567788999999999999987 78999999999999999999998888     78999


Q ss_pred             CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee--eccceEEEEEecCCCEEEEEecCCeEEEEECCCCcee
Q 016458          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL  285 (389)
Q Consensus       208 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  285 (389)
                      .|.+++|+| ++++|++|+.||.|++||++.. ..+..+..  +...|.+++|+|++++|++|+.||.|++||+.++...
T Consensus       228 ~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~  305 (340)
T 1got_B          228 DINAICFFP-NGNAFATGSDDATCRLFDLRAD-QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA  305 (340)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CEEEEEEcC-CCCEEEEEcCCCcEEEEECCCC-cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEe
Confidence            999999999 8899999999999999999976 45544432  2347999999999999999999999999999998888


Q ss_pred             eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (389)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (389)
                      ..+..+..     .|.+++|+|+|.+|++|+.||.|++||
T Consensus       306 ~~~~~h~~-----~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          306 GVLAGHDN-----RVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECCSS-----CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eEeecCCC-----cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            77755443     599999999999999999999999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7.8e-45  Score=314.25  Aligned_cols=297  Identities=20%  Similarity=0.320  Sum_probs=245.3

Q ss_pred             cceeee-ecccccCcEEEEEEcCC----CCeEEEEecCCcEEEEeCCCCCeeEEEee-----CCCcEEEEEECCC----C
Q 016458           56 DLVCCR-TLQGHAGKVYSLDWTSE----RNRIVSASQDGRLIVWNALTSQKTHAIKL-----PCAWVMTCAFSPT----G  121 (389)
Q Consensus        56 ~~~~~~-~l~~h~~~v~~~~~~~~----~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~~----~  121 (389)
                      .+.+.. ...+|.++|++++|+|+    ...+++++.++.|++||+.+++.+..+..     |...|.+++|+|+    +
T Consensus         6 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   85 (366)
T 3k26_A            6 SFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH   85 (366)
T ss_dssp             CCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCC
T ss_pred             EEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCC
Confidence            344433 44489999999999984    45677777788999999998887777664     4477999999998    6


Q ss_pred             cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc
Q 016458          122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (389)
Q Consensus       122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  201 (389)
                      .+|++|+.||.|++||+.++.       ....+.+|...|.+++|+|++..+|++++.||.|++||+.+++....+... 
T Consensus        86 ~~l~~~~~dg~i~v~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-  157 (366)
T 3k26_A           86 PLLAVAGSRGIIRIINPITMQ-------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-  157 (366)
T ss_dssp             EEEEEEETTCEEEEECTTTCC-------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST-
T ss_pred             CEEEEecCCCEEEEEEchhce-------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc-
Confidence            799999999999999998754       567788999999999999943489999999999999999999888776221 


Q ss_pred             cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCccee----------------------------EEeeeccce
Q 016458          202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR----------------------------TFHGHEGDV  253 (389)
Q Consensus       202 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------------------------~~~~~~~~i  253 (389)
                       ..|...|.+++|+| ++++|++++.||.|++||+++. ....                            ....|...|
T Consensus       158 -~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  234 (366)
T 3k26_A          158 -EGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSK-RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV  234 (366)
T ss_dssp             -TSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSH-HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred             -ccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCC-ccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence             36889999999999 8889999999999999999865 3222                            223388999


Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCce--------------eeEeeccCCCCCCCCeeEEEeCCC--CCEEEEEec
Q 016458          254 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ--------------LQVYYQQHGENEIPHVTSIAFSIS--GRLLFAGYS  317 (389)
Q Consensus       254 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~  317 (389)
                      .+++|+  +++|++++.||.|++||++++..              +..+..     +...|.+++|+|+  +++|++|+.
T Consensus       235 ~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~~~l~~~~~  307 (366)
T 3k26_A          235 DCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY-----SQCDIWYMRFSMDFWQKMLALGNQ  307 (366)
T ss_dssp             CEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC-----SSCCSSCCCCEECTTSSEEEEECT
T ss_pred             EEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc-----cCCcEEEEEEcCCCCCcEEEEEec
Confidence            999998  77999999999999999987654              333332     2335899999999  999999999


Q ss_pred             CCcEEEEEcccceE----EEeecCcCCCC--CCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          318 NGDCYVWDTLLAKV----VLNLGSLQNSH--EGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       318 dg~i~i~d~~~~~~----~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      ||.|++||+.+++.    ...+    ..|  ...|++++|+|++++|++++.||.|++    ||+.+
T Consensus       308 dg~i~vwd~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i----wd~~~  366 (366)
T 3k26_A          308 VGKLYVWDLEVEDPHKAKCTTL----THHKCGAAIRQTSFSRDSSILIAVCDDASIWR----WDRLR  366 (366)
T ss_dssp             TSCEEEEECCSSSGGGCEEEEE----CCTTCCSCEEEEEECTTSSEEEEEETTSEEEE----EEC--
T ss_pred             CCcEEEEECCCCCCccccceEE----cccccCCceEEEEeCCCCCeEEEEeCCCEEEE----EEecC
Confidence            99999999998753    3355    455  789999999999999999999999999    99863

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=8.2e-45  Score=313.07  Aligned_cols=305  Identities=18%  Similarity=0.263  Sum_probs=245.5

Q ss_pred             eeeeecccccCcEEEEEEcCCCCeE-EEEec---CCcEEEEeCCCCCeeEEEe-eCCCcEEEEEECCC---CcEEEEecC
Q 016458           58 VCCRTLQGHAGKVYSLDWTSERNRI-VSASQ---DGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPT---GQSVACGGL  129 (389)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l-~~~~~---dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~l~~~~~  129 (389)
                      ...+.+.+|.+.|++++|+|++..+ ++|+.   ||.|++||+.+++...... .|...|.+++|+|+   +.+|++|+.
T Consensus         9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~   88 (357)
T 3i2n_A            9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF   88 (357)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred             HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC
Confidence            3445678899999999999999655 55655   8999999999988765543 67889999999998   699999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE------eeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEecCccc
Q 016458          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY------VPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQ  202 (389)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~  202 (389)
                      ||.|++||+..+.      .....+.+|...|.++.|      +|++ .+|++++.||.|++||+.++. ....+... .
T Consensus        89 dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~  160 (357)
T 3i2n_A           89 GGNLHIWNLEAPE------MPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPV-Q  160 (357)
T ss_dssp             TSCEEEECTTSCS------SCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSEEECCC-T
T ss_pred             CCeEEEEeCCCCC------ccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcceecccc-C
Confidence            9999999998743      145667899999999966      4665 689999999999999999886 55555211 0


Q ss_pred             CCCCCCeeEEE----eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec---CCCEEEEEecCCeEE
Q 016458          203 SGHTADVLSVS----ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP---DGNRFGTGSDDGTCR  275 (389)
Q Consensus       203 ~~~~~~v~~~~----~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~  275 (389)
                      ......+.+++    |+| ++.++++++.||.|++||+++. .. .....|...|.+++|+|   ++.+|++++.||.|+
T Consensus       161 ~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  237 (357)
T 3i2n_A          161 GENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNM-AL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH  237 (357)
T ss_dssp             TSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTT-EE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred             CCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccC-ce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence            12234788988    566 8899999999999999999976 33 44567889999999999   999999999999999


Q ss_pred             EEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccc-------------------eEEEee
Q 016458          276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLA-------------------KVVLNL  335 (389)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-------------------~~~~~~  335 (389)
                      +||+++++....+.......+...|++++|+|+++ +|++++.||.|++||+..+                   +.+..+
T Consensus       238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  317 (357)
T 3i2n_A          238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV  317 (357)
T ss_dssp             EEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred             EEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence            99998876655544211123344699999999998 8999999999999999754                   345555


Q ss_pred             cCcCCCCCCCeeEEEECCCCCeEE-eeeCCCeeEEeecceecccCcc
Q 016458          336 GSLQNSHEGRITCLGLSADGSALC-TGSWDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       336 ~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~~~~W~~~~~~~  381 (389)
                          ..|...|++++|+|++++|+ +++.||.|++    |++.+.++
T Consensus       318 ----~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~i----w~~~~~~~  356 (357)
T 3i2n_A          318 ----TLSTQPISSLDWSPDKRGLCVCSSFDQTVRV----LIVTKLNK  356 (357)
T ss_dssp             ----ECCSSCEEEEEECSSSTTEEEEEETTSEEEE----EEECC---
T ss_pred             ----ccCCCCeeEEEEcCCCCeEEEEecCCCcEEE----EECCCccc
Confidence                68999999999999999998 8999999999    99987654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-43  Score=310.15  Aligned_cols=295  Identities=22%  Similarity=0.396  Sum_probs=248.1

Q ss_pred             eeeeecccccCc--EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEee-CCCcEEEEEECCCCcEEEEecCCCcEE
Q 016458           58 VCCRTLQGHAGK--VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCS  134 (389)
Q Consensus        58 ~~~~~l~~h~~~--v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~  134 (389)
                      .......+|...  +.+++|++  ..+++++.||.|++||+.+++....+.. |...|.+++|+|++++|++|+.||.|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  159 (401)
T 4aez_A           82 ERVLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVD  159 (401)
T ss_dssp             SEEEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ceeeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEE
Confidence            334445577765  45566665  5688889999999999999998888776 678899999999999999999999999


Q ss_pred             EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC-CCeeEEEecCcccCCCCCCeeEEE
Q 016458          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLRTSVFGGEFQSGHTADVLSVS  213 (389)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~  213 (389)
                      +||+.++.       ....+.+|...|.++.|++   .++++++.||.|++||++ .......+     ..|...|.+++
T Consensus       160 iwd~~~~~-------~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~  224 (401)
T 4aez_A          160 IYDVESQT-------KLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTL-----QGHSSEVCGLA  224 (401)
T ss_dssp             EEETTTCC-------EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEE-----ECCSSCEEEEE
T ss_pred             EEECcCCe-------EEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEE-----cCCCCCeeEEE
Confidence            99998754       6677889999999999943   689999999999999998 45556666     68999999999


Q ss_pred             eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCC-EEEEEe--cCCeEEEEECCCCceeeEeec
Q 016458          214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGS--DDGTCRLFDIRTGHQLQVYYQ  290 (389)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~  290 (389)
                      |+| ++.+|++++.||.|++||+++. .....+..|...|.+++|+|++. ++++++  .|+.|++||+++++....+..
T Consensus       225 ~~~-~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~  302 (401)
T 4aez_A          225 WRS-DGLQLASGGNDNVVQIWDARSS-IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA  302 (401)
T ss_dssp             ECT-TSSEEEEEETTSCEEEEETTCS-SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC
T ss_pred             EcC-CCCEEEEEeCCCeEEEccCCCC-CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence            999 8899999999999999999987 77788888999999999999664 555654  799999999999988877753


Q ss_pred             cCCCCCCCCeeEEEeCCCCCEEEE--EecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458          291 QHGENEIPHVTSIAFSISGRLLFA--GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK  368 (389)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  368 (389)
                      .      ..+.+++|+|+++++++  |+.||.|++||+.++........  .+|...|.+++|+|++++|++++.||.|+
T Consensus       303 ~------~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~--~~h~~~v~~~~~s~dg~~l~s~~~dg~i~  374 (401)
T 4aez_A          303 G------SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI--PAHDTRVLYSALSPDGRILSTAASDENLK  374 (401)
T ss_dssp             S------SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE--ECCSSCCCEEEECTTSSEEEEECTTSEEE
T ss_pred             C------CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe--cCCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            2      24999999999999999  44899999999998665544311  68999999999999999999999999999


Q ss_pred             EeecceecccCcccC
Q 016458          369 VNLGFWRVQEGALSP  383 (389)
Q Consensus       369 i~~~~W~~~~~~~~~  383 (389)
                      +    |++.+++...
T Consensus       375 i----w~~~~~~~~~  385 (401)
T 4aez_A          375 F----WRVYDGDHVK  385 (401)
T ss_dssp             E----EECCC-----
T ss_pred             E----EECCCCcccc
Confidence            9    9999987643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-44  Score=317.79  Aligned_cols=306  Identities=13%  Similarity=0.202  Sum_probs=246.5

Q ss_pred             ccCCCcceeeeec-ccccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCC---CC---eeEEEeeCCCcEEEEEECCCCc
Q 016458           51 SFGPTDLVCCRTL-QGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALT---SQ---KTHAIKLPCAWVMTCAFSPTGQ  122 (389)
Q Consensus        51 ~~~~~~~~~~~~l-~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~---~~---~~~~~~~~~~~v~~~~~~~~~~  122 (389)
                      .|++. .+.+..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+   +.   ....+ .|...|.+++|+|+++
T Consensus        47 ~w~~~-g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~  124 (437)
T 3gre_A           47 MGNLR-GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD  124 (437)
T ss_dssp             GGGCC-CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS
T ss_pred             ccccc-ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC
Confidence            46644 4566677 99999999999999 999999999999999999876   43   23333 4889999999999999


Q ss_pred             EEEEecCCCcEEEEeCCCCCCCCCCCcceeeec----------c--cccceEEEE--EeeCCCcEEEEeeCCCeEEEEeC
Q 016458          123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS----------G--HKGYVSCCQ--YVPDEDTHLITSSGDQTCVLWDI  188 (389)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~----------~--~~~~v~~~~--~~~~~~~~l~~~~~dg~i~iwd~  188 (389)
                      +|++++.||.|++||+......    .......          .  +...+.++.  +++++ .++++++.||.|++||+
T Consensus       125 ~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~  199 (437)
T 3gre_A          125 AFAVSSKDGQIIVLKVNHYQQE----SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDI  199 (437)
T ss_dssp             EEEEEETTSEEEEEEEEEEEET----TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEET
T ss_pred             EEEEEeCCCEEEEEEeccccCC----ceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeC
Confidence            9999999999999999521000    0111111          1  455666766  34565 78999999999999999


Q ss_pred             CCCeeEEEecCcccCC--CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-eeccceEEEEEec----C
Q 016458          189 TTGLRTSVFGGEFQSG--HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFP----D  261 (389)
Q Consensus       189 ~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~----~  261 (389)
                      ++++....+     ..  |...|.+++|+| ++++|++|+.||.|++||++.. ..+..+. .|..+|.+++|+|    +
T Consensus       200 ~~~~~~~~~-----~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~s~~  272 (437)
T 3gre_A          200 RTLERLQII-----ENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFN-VLIRSWSFGDHAPITHVEVCQFYGKN  272 (437)
T ss_dssp             TTCCEEEEE-----ECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTT-EEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred             CCCeeeEEE-----ccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCc-cEEEEEecCCCCceEEEEeccccCCC
Confidence            999998888     44  788999999999 7899999999999999999986 7777775 7788999996665    6


Q ss_pred             CCEEEEEecCCeEEEEECCCCceeeEeeccCC---------------------CCCCCCeeEEEeCCCCCEEEEEecCCc
Q 016458          262 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG---------------------ENEIPHVTSIAFSISGRLLFAGYSNGD  320 (389)
Q Consensus       262 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~  320 (389)
                      +.+|++++.||.|++||+++++....+..+..                     ..+...|++++|+ ++++|++|+.||.
T Consensus       273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~  351 (437)
T 3gre_A          273 SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSS  351 (437)
T ss_dssp             EEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTE
T ss_pred             ccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCe
Confidence            77999999999999999999988777764321                     1145568999999 7899999999999


Q ss_pred             EEEEEcccceEEEeecCc---------------------------------CCCCCCCeeEEEECCC--CCeEEeeeCCC
Q 016458          321 CYVWDTLLAKVVLNLGSL---------------------------------QNSHEGRITCLGLSAD--GSALCTGSWDT  365 (389)
Q Consensus       321 i~i~d~~~~~~~~~~~~~---------------------------------~~~~~~~v~~~~~~~~--~~~l~~~~~dg  365 (389)
                      |++||+.+++....+...                                 ...|...|++++|+++  +.+|++|+.||
T Consensus       352 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG  431 (437)
T 3gre_A          352 IVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSG  431 (437)
T ss_dssp             EEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTS
T ss_pred             EEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCc
Confidence            999999988766655310                                 0228999999999988  78999999999


Q ss_pred             eeEEeeccee
Q 016458          366 NLKVNLGFWR  375 (389)
Q Consensus       366 ~i~i~~~~W~  375 (389)
                      .|+|    |+
T Consensus       432 ~I~i----w~  437 (437)
T 3gre_A          432 LIGI----FQ  437 (437)
T ss_dssp             CEEE----EC
T ss_pred             eEEE----eC
Confidence            9999    95

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.8e-45  Score=319.17  Aligned_cols=297  Identities=15%  Similarity=0.285  Sum_probs=251.0

Q ss_pred             cCcEEEEEEcCCCC-eEEEE----------ecCCcEEEEeCCCCC---eeEEEeeCCCcEEEEEECCCCcEEEEecCCCc
Q 016458           67 AGKVYSLDWTSERN-RIVSA----------SQDGRLIVWNALTSQ---KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV  132 (389)
Q Consensus        67 ~~~v~~~~~~~~~~-~l~~~----------~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (389)
                      ...|.+++|+|+++ +|++|          +.|+.|++||+.++.   .+..+ .|...|.+++|+|++++|++++.||.
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~   90 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGS   90 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCe
Confidence            34689999999987 99999          889999999998875   33333 47788999999999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe------eEEEecCcccCCCC
Q 016458          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL------RTSVFGGEFQSGHT  206 (389)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~  206 (389)
                      |++|++.....   .......+.+|...|.+++|+|++..+|++++.||.|++||+.++.      ....+  .....|.
T Consensus        91 v~vw~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~  165 (416)
T 2pm9_A           91 LELYSTNEANN---AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP--GQSMSSV  165 (416)
T ss_dssp             EEEECCSSTTS---CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC--CCSCCSS
T ss_pred             EEEeecccccc---cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc--ccccCCC
Confidence            99999986321   1225677889999999999999855899999999999999999876      22221  1125688


Q ss_pred             CCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee------ccceEEEEEecCC-CEEEEEecCC---eEEE
Q 016458          207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------EGDVNTVKFFPDG-NRFGTGSDDG---TCRL  276 (389)
Q Consensus       207 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~l~~~~~dg---~i~i  276 (389)
                      ..|.+++|+|.++.+|++++.||.|++||++.. ..+..+..+      ...|.+++|+|++ .++++++.|+   .|++
T Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~  244 (416)
T 2pm9_A          166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI  244 (416)
T ss_dssp             CCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCE
T ss_pred             CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEE
Confidence            899999999955899999999999999999987 677777766      7889999999987 6899999998   9999


Q ss_pred             EECCCC-ceeeEeeccCCCCCCCCeeEEEeCC-CCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458          277 FDIRTG-HQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (389)
Q Consensus       277 ~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (389)
                      ||++++ .....+..    .+...|.+++|+| ++++|++++.||.|++||+.+++.+..+    ..|...|++++|+|+
T Consensus       245 ~d~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~----~~~~~~v~~~~~s~~  316 (416)
T 2pm9_A          245 WDLRNANTPLQTLNQ----GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF----PARGNWCFKTKFAPE  316 (416)
T ss_dssp             EETTSTTSCSBCCCS----CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE----ECSSSCCCCEEECTT
T ss_pred             EeCCCCCCCcEEeec----CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee----cCCCCceEEEEECCC
Confidence            999986 34444330    2334699999999 9999999999999999999999999988    789999999999999


Q ss_pred             C-CeEEeeeCCCeeEEeecceecccCccc
Q 016458          355 G-SALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       355 ~-~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      + .+|++++.||.|++    |++.+++..
T Consensus       317 ~~~~l~s~~~d~~i~i----w~~~~~~~~  341 (416)
T 2pm9_A          317 APDLFACASFDNKIEV----QTLQNLTNT  341 (416)
T ss_dssp             CTTEEEECCSSSEEEE----EESCCCCCS
T ss_pred             CCCEEEEEecCCcEEE----EEccCCCCC
Confidence            8 89999999999999    999987643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.4e-43  Score=334.94  Aligned_cols=296  Identities=22%  Similarity=0.352  Sum_probs=262.9

Q ss_pred             ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (389)
                      +...+.|.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..|..+|.+++|+|++++|++++.||.|++|
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEEee
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSIS  215 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~  215 (389)
                      ++.++.       ....+.+|.+.|.+++|+|++ .++++++.||.|++||+.++ .....+     ..|...|.+++|+
T Consensus        83 ~~~~~~-------~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~-----~~~~~~v~~~~~~  149 (814)
T 3mkq_A           83 NYNTGE-------KVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTF-----EGHEHFVMCVAFN  149 (814)
T ss_dssp             ETTTCC-------EEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEE-----ECCSSCEEEEEEE
T ss_pred             ECCCCc-------EEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEE-----cCCCCcEEEEEEE
Confidence            998755       667788899999999999998 68999999999999999987 555666     6789999999999


Q ss_pred             CCCCcEEEEeeCCCceEEEeCCCCCcceeEEee-eccceEEEEEec--CCCEEEEEecCCeEEEEECCCCceeeEeeccC
Q 016458          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH  292 (389)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  292 (389)
                      |.++..+++++.||.|++||++.. .....+.. +...+.+++|+|  ++.+|++++.||.|++||+.+++....+..+.
T Consensus       150 p~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  228 (814)
T 3mkq_A          150 PKDPSTFASGCLDRTVKVWSLGQS-TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM  228 (814)
T ss_dssp             TTEEEEEEEEETTSEEEEEETTCS-SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCC-cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence            967789999999999999999877 44445544 448899999999  99999999999999999999998887775543


Q ss_pred             CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCe-EEeeeCCCeeEEee
Q 016458          293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA-LCTGSWDTNLKVNL  371 (389)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~~  371 (389)
                      .     .|.+++|+|+++++++++.||.|++||+.+++....+    ..|...+.+++|+|++.. +++++.|+.+.+  
T Consensus       229 ~-----~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--  297 (814)
T 3mkq_A          229 S-----NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL----NVGLERSWCIATHPTGRKNYIASGFDNGFTV--  297 (814)
T ss_dssp             S-----CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE----CCSSSSEEEEEECTTCGGGEEEEEETTEEEE--
T ss_pred             C-----CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe----ecCCCcEEEEEEccCCCceEEEEEeCCCEEE--
Confidence            3     4999999999999999999999999999999999888    788899999999999874 255556777888  


Q ss_pred             cceecccC
Q 016458          372 GFWRVQEG  379 (389)
Q Consensus       372 ~~W~~~~~  379 (389)
                        |++..+
T Consensus       298 --~~~~~~  303 (814)
T 3mkq_A          298 --LSLGND  303 (814)
T ss_dssp             --EECSCC
T ss_pred             --EEcCCC
Confidence              887654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1e-43  Score=313.12  Aligned_cols=311  Identities=12%  Similarity=0.162  Sum_probs=251.3

Q ss_pred             CCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEE
Q 016458           47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC  126 (389)
Q Consensus        47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  126 (389)
                      .....|+.........+.+| ..+....|+|++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++
T Consensus        78 ~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  156 (420)
T 3vl1_A           78 GHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALIS  156 (420)
T ss_dssp             TEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEE
T ss_pred             CcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEE
Confidence            33445666666666666666 45566678999999999999999999999999888888899999999999999999999


Q ss_pred             ecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCC
Q 016458          127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT  206 (389)
Q Consensus       127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  206 (389)
                      ++.|+.|++||+.++.       ....+.+|...|.+++|+|++ .+|++++.||.|++||+.+++....+...  ..+.
T Consensus       157 ~s~d~~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~~~  226 (420)
T 3vl1_A          157 SSQDMQLKIWSVKDGS-------NPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRK--ENPH  226 (420)
T ss_dssp             EETTSEEEEEETTTCC-------CCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBT--TBTT
T ss_pred             EeCCCeEEEEeCCCCc-------CceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecC--CCCC
Confidence            9999999999998754       456778999999999999997 78999999999999999999988887432  1233


Q ss_pred             CCeeE---------------------EEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCC-E
Q 016458          207 ADVLS---------------------VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-R  264 (389)
Q Consensus       207 ~~v~~---------------------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~  264 (389)
                      ..+.+                     ++|+| ++++|++++.||.|++||+++..........|...|.+++|+|++. +
T Consensus       227 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  305 (420)
T 3vl1_A          227 DGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANY  305 (420)
T ss_dssp             CCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTE
T ss_pred             CCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCE
Confidence            44444                     44566 7889999999999999999987444444455888999999999998 9


Q ss_pred             EEEEecCCeEEEEECCCCce-eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee---c--Cc
Q 016458          265 FGTGSDDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL---G--SL  338 (389)
Q Consensus       265 l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~--~~  338 (389)
                      |++++.||.|++||+++++. +..+..++.    ..+.++.+ +++++|++++.||.|++||+........+   .  ..
T Consensus       306 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~----~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~  380 (420)
T 3vl1_A          306 IYAGYENGMLAQWDLRSPECPVGEFLINEG----TPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTF  380 (420)
T ss_dssp             EEEEETTSEEEEEETTCTTSCSEEEEESTT----SCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEE
T ss_pred             EEEEeCCCeEEEEEcCCCcCchhhhhccCC----CCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccE
Confidence            99999999999999998754 555544332    24777755 57889999999999999998763211100   0  01


Q ss_pred             CCCCCCCeeEEEECCCCC---eEEeeeCCCeeEEeecceeccc
Q 016458          339 QNSHEGRITCLGLSADGS---ALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       339 ~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      ...|.+.|.+++|+|++.   .+++++.+|.+.+    |++++
T Consensus       381 ~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~----~~~~~  419 (420)
T 3vl1_A          381 LVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL----YNLSN  419 (420)
T ss_dssp             ECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE----EESCC
T ss_pred             EccCCcceEEEEEccCCCCcceEEEEcCCceEEE----EeccC
Confidence            157888999999999999   7888889999999    99875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=8e-43  Score=299.38  Aligned_cols=262  Identities=20%  Similarity=0.372  Sum_probs=230.2

Q ss_pred             CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC------CeeEEEeeCCCcEEEEEEC
Q 016458           45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS------QKTHAIKLPCAWVMTCAFS  118 (389)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~------~~~~~~~~~~~~v~~~~~~  118 (389)
                      .+.....|+.......+.+..|...|.+++|+|++.+|++|+.|+.+++|++...      .....+..|...|.+++|+
T Consensus        84 ~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  163 (354)
T 2pbi_B           84 QDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT  163 (354)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEEC
T ss_pred             CCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEe
Confidence            3445567877777888889999999999999999999999999999999998643      3456778899999999999


Q ss_pred             CCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCeeEEEe
Q 016458          119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVF  197 (389)
Q Consensus       119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~  197 (389)
                      |++..|++++.|+.|++||+.++.       ....+.+|...|.++.|+|+. ..+|++|+.||.|++||+++++....+
T Consensus       164 ~~~~~l~t~s~D~~v~lwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~  236 (354)
T 2pbi_B          164 NSDMQILTASGDGTCALWDVESGQ-------LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF  236 (354)
T ss_dssp             SSSSEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCe-------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            999999999999999999998755       677888999999999998853 378999999999999999999998888


Q ss_pred             cCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee--ccceEEEEEecCCCEEEEEecCCeEE
Q 016458          198 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH--EGDVNTVKFFPDGNRFGTGSDDGTCR  275 (389)
Q Consensus       198 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~  275 (389)
                           ..|...|.+++|+| ++++|++++.|+.|++||++.. ..+..+..+  ...+.+++|+|++.+|++++.|+.|+
T Consensus       237 -----~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~  309 (354)
T 2pbi_B          237 -----ETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRAD-REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN  309 (354)
T ss_dssp             -----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             -----cCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCC-cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEE
Confidence                 78999999999999 8899999999999999999976 445444433  34689999999999999999999999


Q ss_pred             EEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458          276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (389)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (389)
                      +||+.++..+..+..+.     ..|++++|+|+|++|++|+.||.|++|+
T Consensus       310 vwd~~~~~~~~~l~~h~-----~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          310 VWDVLKGSRVSILFGHE-----NRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEETTTCSEEEEECCCS-----SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEECCCCceEEEEECCC-----CcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999998887765433     3599999999999999999999999996

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.4e-42  Score=308.27  Aligned_cols=296  Identities=21%  Similarity=0.361  Sum_probs=252.7

Q ss_pred             ceeeeecccccCcE-EEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEE
Q 016458           57 LVCCRTLQGHAGKV-YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI  135 (389)
Q Consensus        57 ~~~~~~l~~h~~~v-~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  135 (389)
                      ......+.+|.+.| .++.+  ++++|++|+.||+|++||+.+++.+..+..|.+.|.+++|+|++ .+++|+.||.|++
T Consensus       111 ~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v  187 (464)
T 3v7d_B          111 VPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV  187 (464)
T ss_dssp             CCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred             CcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence            34567899999874 67776  45699999999999999999999999999999999999999988 8999999999999


Q ss_pred             EeCCCCCCCCCCCcceeeecccccceEEEEEeeC-CCcEEEEeeCCCeEEEEeCCCCeeEEEecC---------------
Q 016458          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGLRTSVFGG---------------  199 (389)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------  199 (389)
                      ||+.++.       ....+.+|...|.+++|++. +..++++++.||.|++||+.++........               
T Consensus       188 wd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (464)
T 3v7d_B          188 WDIKKGC-------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP  260 (464)
T ss_dssp             EETTTTE-------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred             EECCCCc-------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCe
Confidence            9998754       66778899999999999963 237899999999999999988753321100               


Q ss_pred             ---cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEE
Q 016458          200 ---EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL  276 (389)
Q Consensus       200 ---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  276 (389)
                         ....+|...+.++.  + +++++++++.||.|++||+++. ..+..+.+|...|.+++|+|+++++++++.||.|++
T Consensus       261 ~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~v  336 (464)
T 3v7d_B          261 YFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI  336 (464)
T ss_dssp             TEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             EEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence               01156778888774  4 6689999999999999999987 788889999999999999999999999999999999


Q ss_pred             EECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC
Q 016458          277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS  356 (389)
Q Consensus       277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (389)
                      ||+++++.+..+..+..     .|.+++|+  +++|++++.||.|++||+.++......     .+...+..++|+++++
T Consensus       337 wd~~~~~~~~~~~~h~~-----~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~  404 (464)
T 3v7d_B          337 WDLENGELMYTLQGHTA-----LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-----HHTNLSAITTFYVSDN  404 (464)
T ss_dssp             EETTTTEEEEEECCCSS-----CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-----ECTTCCCEEEEEECSS
T ss_pred             EECCCCcEEEEEeCCCC-----cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-----cCCCCccEEEEEeCCC
Confidence            99999988888755433     59999997  579999999999999999988777665     3666788899999999


Q ss_pred             eEEeeeCCCeeEEeecceecccCcccC
Q 016458          357 ALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       357 ~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      +|++++ ||.|++    ||+.+|++..
T Consensus       405 ~l~~~~-dg~i~i----wd~~~g~~~~  426 (464)
T 3v7d_B          405 ILVSGS-ENQFNI----YNLRSGKLVH  426 (464)
T ss_dssp             EEEEEE-TTEEEE----EETTTCCEEE
T ss_pred             EEEEec-CCeEEE----EECCCCcEEe
Confidence            999988 999999    9999998764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7.2e-43  Score=298.47  Aligned_cols=289  Identities=22%  Similarity=0.336  Sum_probs=249.9

Q ss_pred             ccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (389)
Q Consensus        66 h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (389)
                      |.++|.+++|+|+|++++++..++.+..|.............|...|.+++|+|+++++++++ ||.|++|++..+... 
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~-   85 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK-   85 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC-
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce-
Confidence            566899999999999999988888777776655555555567889999999999999999999 999999999875421 


Q ss_pred             CCCcceeee--cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe--eEEEecCcccCCCCCCeeEEEeeCCCCcE
Q 016458          146 GNLPVSRML--SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSNSRM  221 (389)
Q Consensus       146 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  221 (389)
                         .....+  ..|...|.+++|+|++ +++++++.||.|++||+.++.  ....+     ..|...+.+++|+| ++++
T Consensus        86 ---~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~~i~~~~~~~-~~~~  155 (337)
T 1gxr_A           86 ---SPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIKAEL-----TSSAPACYALAISP-DSKV  155 (337)
T ss_dssp             ---SCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--EEEEEE-----ECSSSCEEEEEECT-TSSE
T ss_pred             ---eeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcceeeec-----ccCCCceEEEEECC-CCCE
Confidence               122222  3788999999999987 789999999999999999887  44444     57888999999999 8889


Q ss_pred             EEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCee
Q 016458          222 FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT  301 (389)
Q Consensus       222 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~  301 (389)
                      +++++.||.|++||+++. +....+..|...+.+++|+|++++|++++.||.|++||+++++....+...      ..+.
T Consensus       156 l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------~~v~  228 (337)
T 1gxr_A          156 CFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT------SQIF  228 (337)
T ss_dssp             EEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS------SCEE
T ss_pred             EEEEeCCCcEEEEeCCCC-ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC------CceE
Confidence            999999999999999987 778888899999999999999999999999999999999998877766432      2489


Q ss_pred             EEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcc
Q 016458          302 SIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~  381 (389)
                      +++|+|+++++++++.+|.|++||+.+++.. .+    ..|...|.+++|+|++++|++++.||.|++    |++.+++.
T Consensus       229 ~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~----~~~~~~~~  299 (337)
T 1gxr_A          229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QL----HLHESCVLSLKFAYCGKWFVSTGKDNLLNA----WRTPYGAS  299 (337)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSSCEE-EE----CCCSSCEEEEEECTTSSEEEEEETTSEEEE----EETTTCCE
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EE----cCCccceeEEEECCCCCEEEEecCCCcEEE----EECCCCeE
Confidence            9999999999999999999999999988764 34    678999999999999999999999999999    99998876


Q ss_pred             c
Q 016458          382 S  382 (389)
Q Consensus       382 ~  382 (389)
                      .
T Consensus       300 ~  300 (337)
T 1gxr_A          300 I  300 (337)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.9e-45  Score=317.51  Aligned_cols=293  Identities=15%  Similarity=0.209  Sum_probs=230.6

Q ss_pred             ecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC--CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458           62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN  139 (389)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~  139 (389)
                      .+..|.++|++++|+|++++|++|+.||.|++||+.++  +....+..|...|.+++|+|++++|++++.|+.|++||+.
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            34457789999999999999999999999999999988  7788888999999999999999999999999999999998


Q ss_pred             CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee---EEEecCcccCC-CCCCeeEEEee
Q 016458          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR---TSVFGGEFQSG-HTADVLSVSIS  215 (389)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~-~~~~v~~~~~~  215 (389)
                      .+.    .......+..|...|.+++|+|++ .+|++++.|+.|++||+.++..   ...+     .. |...|.+++|+
T Consensus        86 ~~~----~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~h~~~v~~~~~~  155 (377)
T 3dwl_C           86 PDG----TWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHL-----KRPLRSTILSLDWH  155 (377)
T ss_dssp             -------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEE-----CSSCCSCEEEEEEC
T ss_pred             CCC----ceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEe-----ecccCCCeEEEEEc
Confidence            743    233456677899999999999987 7899999999999999998863   4555     34 89999999999


Q ss_pred             CCCCcEEEEeeCCCceEEEeCCCC-----------------CcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEE
Q 016458          216 GSNSRMFVSGSCDSTARLWDTRVA-----------------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (389)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~-----------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (389)
                      | ++++|++++.|+.|++||++..                 ...+..+ +|...|.+++|+|++++|++++.||.|++||
T Consensus       156 ~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd  233 (377)
T 3dwl_C          156 P-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAY  233 (377)
T ss_dssp             T-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred             C-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            9 8899999999999999998522                 1334444 7999999999999999999999999999999


Q ss_pred             CCCCce----eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE--E--------------------
Q 016458          279 IRTGHQ----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--V--------------------  332 (389)
Q Consensus       279 ~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~--------------------  332 (389)
                      +++++.    +..+..+     ...|.+++|+|++++|++|+.++ +.+|+......  .                    
T Consensus       234 ~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (377)
T 3dwl_C          234 PSAPEQPPRALITVKLS-----QLPLRSLLWANESAIVAAGYNYS-PILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGE  307 (377)
T ss_dssp             ECSTTSCEEECCCEECS-----SSCEEEEEEEETTEEEEEESSSS-EEEECCCC---CCSBCCCSCCCCCCBSSSSSBCC
T ss_pred             CCCCCCcceeeEeecCC-----CCceEEEEEcCCCCEEEEEcCCc-EEEEEeCCCceEEEeeeccccccccccccccccc
Confidence            999877    4444433     33599999999999999887665 45776642110  0                    


Q ss_pred             --------------Eee------------cCcCCCCCCCeeEEEECCCC-C---eEEeeeCCCeeEEeecceec
Q 016458          333 --------------LNL------------GSLQNSHEGRITCLGLSADG-S---ALCTGSWDTNLKVNLGFWRV  376 (389)
Q Consensus       333 --------------~~~------------~~~~~~~~~~v~~~~~~~~~-~---~l~~~~~dg~i~i~~~~W~~  376 (389)
                                    ..+            ......|.+.|+++++.+.. .   .|+|||.||.|++    ||+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~i----Wdl  377 (377)
T 3dwl_C          308 GREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVL----WTL  377 (377)
T ss_dssp             CCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEE----ECC
T ss_pred             ccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEE----ecC
Confidence                          000            00112499999999976643 3   5999999999999    985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.3e-42  Score=290.98  Aligned_cols=257  Identities=17%  Similarity=0.223  Sum_probs=212.9

Q ss_pred             eecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC--CCeeEEEeeCCCcEEEEEECCC--CcEEEEecCCCcEEEE
Q 016458           61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT--SQKTHAIKLPCAWVMTCAFSPT--GQSVACGGLDSVCSIF  136 (389)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vw  136 (389)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|+|||+..  .+.+..+.+|.++|.+++|+++  +++|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            46789999999999999999999999999999999974  3677889999999999999864  8999999999999999


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCee--EEEecCcccCCCCCCeeEEE
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLR--TSVFGGEFQSGHTADVLSVS  213 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~  213 (389)
                      |+.++.     ......+..|...|.+++|+|+. ..+|++++.|+.|++||+.++..  ...+     ..|...|.+++
T Consensus        83 d~~~~~-----~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~-----~~h~~~v~~~~  152 (297)
T 2pm7_B           83 KEENGR-----WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII-----DAHAIGVNSAS  152 (297)
T ss_dssp             EBSSSC-----BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEE-----ECCSSCEEEEE
T ss_pred             EcCCCc-----eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeee-----ecccCccceEe
Confidence            998642     22345677899999999999972 26899999999999999987632  2333     57889999999


Q ss_pred             eeCCC------------CcEEEEeeCCCceEEEeCCCCCc---ceeEEeeeccceEEEEEecCC---CEEEEEecCCeEE
Q 016458          214 ISGSN------------SRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFFPDG---NRFGTGSDDGTCR  275 (389)
Q Consensus       214 ~~~~~------------~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~  275 (389)
                      |+|..            +++|++|+.|+.|++||++....   ....+.+|...|.+++|+|++   .+|++++.|+.|+
T Consensus       153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~  232 (297)
T 2pm7_B          153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI  232 (297)
T ss_dssp             ECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred             ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEE
Confidence            99842            56999999999999999987532   456788899999999999984   8999999999999


Q ss_pred             EEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      +||++...............+...+.+++|+|+|++|++++.||.|++|+..
T Consensus       233 iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            9999875321111111112234469999999999999999999999999976

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.7e-42  Score=293.23  Aligned_cols=271  Identities=22%  Similarity=0.387  Sum_probs=232.2

Q ss_pred             cccCCCCCcccCCCc-----ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEE
Q 016458           42 SRSQGRAPVSFGPTD-----LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA  116 (389)
Q Consensus        42 ~~~~~~~~~~~~~~~-----~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~  116 (389)
                      +.+.+.....|+...     ..+.+.+.+|...|.+++|+|++++|++|+.|++|++||+.+++....+..|...|.+++
T Consensus        35 s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~  114 (319)
T 3frx_A           35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD  114 (319)
T ss_dssp             EEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEE
Confidence            444555666775432     356778999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCC-----CcEEEEeeCCCeEEEEeCCCC
Q 016458          117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-----DTHLITSSGDQTCVLWDITTG  191 (389)
Q Consensus       117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~  191 (389)
                      |+|++.+|++|+.|+.|++||+...        ....+.+|...|.++.|.|..     ...+++++.|+.|++||+.+.
T Consensus       115 ~~~~~~~l~s~s~D~~i~vwd~~~~--------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~  186 (319)
T 3frx_A          115 IDKKASMIISGSRDKTIKVWTIKGQ--------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF  186 (319)
T ss_dssp             ECTTSCEEEEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCC--------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc
Confidence            9999999999999999999999642        466778999999999999853     247999999999999999999


Q ss_pred             eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC
Q 016458          192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  271 (389)
Q Consensus       192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  271 (389)
                      .....+     .+|...|.+++|+| ++.+|++++.||.|++||+++. +.+..+.. ...|.+++|+|++.+|++++.+
T Consensus       187 ~~~~~~-----~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~  258 (319)
T 3frx_A          187 QIEADF-----IGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAK-KAMYTLSA-QDEVFSLAFSPNRYWLAAATAT  258 (319)
T ss_dssp             EEEEEE-----CCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTT-EEEEEEEC-CSCEEEEEECSSSSEEEEEETT
T ss_pred             hhheee-----cCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-cEEEEecC-CCcEEEEEEcCCCCEEEEEcCC
Confidence            888887     78999999999999 8899999999999999999987 66666664 5689999999999999888755


Q ss_pred             CeEEEEECCCCceeeEeeccC---CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458          272 GTCRLFDIRTGHQLQVYYQQH---GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (389)
Q Consensus       272 g~i~i~d~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (389)
                       .+++|++........+....   ...+...+.+++|+|+|++|++|+.||.|++||+.++
T Consensus       259 -~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          259 -GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             -EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             -CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence             59999998876665553321   1223446899999999999999999999999998764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9.6e-42  Score=300.01  Aligned_cols=279  Identities=22%  Similarity=0.401  Sum_probs=241.3

Q ss_pred             cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe--eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCC
Q 016458           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG  146 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  146 (389)
                      .++.|+||++ ++||+|. |++|+|||..+++....+.  .|...|++++|+|+|++|++|+.||.|++||+.+++    
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~----  180 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK----  180 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc----
Confidence            3678999976 4777765 8999999999999887776  456789999999999999999999999999998755    


Q ss_pred             CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458          147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG  225 (389)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  225 (389)
                         ....+.+|...+.++.+++   .++++|+.|+.+++||..... .+..+     ..|...+..+.++| ++.+++++
T Consensus       181 ---~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~-----~~h~~~~~~~~~~~-~g~~l~s~  248 (420)
T 4gga_A          181 ---RLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATL-----SGHSQEVCGLRWAP-DGRHLASG  248 (420)
T ss_dssp             ---EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEE-----ECCSSCEEEEEECT-TSSEEEEE
T ss_pred             ---EEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEe-----cccccceeeeeecC-CCCeeeee
Confidence               6778889999999988864   689999999999999988754 44455     68999999999999 88999999


Q ss_pred             eCCCceEEEeCCCCC---cceeEEeeeccceEEEEEecCCC-EEEE--EecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458          226 SCDSTARLWDTRVAS---RAVRTFHGHEGDVNTVKFFPDGN-RFGT--GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (389)
Q Consensus       226 ~~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (389)
                      +.|+.+++||.....   ..+.....|...|.+++|+|++. ++++  |+.|+.|++||+.++.....+....      .
T Consensus       249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~------~  322 (420)
T 4gga_A          249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS------Q  322 (420)
T ss_dssp             ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS------C
T ss_pred             eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc------c
Confidence            999999999998653   24567778999999999999654 5554  4579999999999998888776543      3


Q ss_pred             eeEEEeCCCCCEEEEEe--cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          300 VTSIAFSISGRLLFAGY--SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       300 i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      +.++.|+|+++.+++++  .||.|+|||+.+++.+..+    .+|.+.|++++|+|||++|++|+.||+|+|    ||+.
T Consensus       323 v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l----~gH~~~V~~l~~spdg~~l~S~s~D~tvri----Wdv~  394 (420)
T 4gga_A          323 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL----KGHTSRVLSLTMSPDGATVASAAADETLRL----WRCF  394 (420)
T ss_dssp             EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSSCEEEEETTTEEEE----ECCS
T ss_pred             eeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE----cCCCCCEEEEEEcCCCCEEEEEecCCeEEE----EECC
Confidence            89999999999888765  7899999999999999999    799999999999999999999999999999    9987


Q ss_pred             cC
Q 016458          378 EG  379 (389)
Q Consensus       378 ~~  379 (389)
                      +.
T Consensus       395 ~~  396 (420)
T 4gga_A          395 EL  396 (420)
T ss_dssp             CS
T ss_pred             CC
Confidence            64

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.6e-43  Score=302.63  Aligned_cols=253  Identities=17%  Similarity=0.213  Sum_probs=210.8

Q ss_pred             eecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeE----EEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458           61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH----AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (389)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (389)
                      ....+|...|++++|+|++. +++++.||+|+|||+.+++...    ....|...|.+++|+|++++|++|+.|+.|++|
T Consensus        88 ~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw  166 (357)
T 4g56_B           88 TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW  166 (357)
T ss_dssp             SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            34457999999999999975 5667889999999998876543    334688899999999999999999999999999


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  216 (389)
                      |+.++.       ....+.+|...|.+++|+++++.++++++.||.|++||+++++....+..   ..+...+.+++|+|
T Consensus       167 d~~~~~-------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~---~~~~~~v~~v~~sp  236 (357)
T 4g56_B          167 DLSQKA-------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF---CASDTIPTSVTWHP  236 (357)
T ss_dssp             ETTTTE-------EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC---TTCCSCEEEEEECT
T ss_pred             ECCCCc-------EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee---ccccccccchhhhh
Confidence            998755       67788899999999999999877899999999999999999877665422   35677899999999


Q ss_pred             CCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC-CEEEEEecCCeEEEEECCCCceeeEeeccCCCC
Q 016458          217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN  295 (389)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  295 (389)
                      .++.+|++|+.|+.|++||+++. +.+..+.+|...|++++|+|++ ++|++++.||.|++||+++++.+..+      .
T Consensus       237 ~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~------~  309 (357)
T 4g56_B          237 EKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL------S  309 (357)
T ss_dssp             TSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC------C
T ss_pred             cccceEEEeecccceeEEECCCC-cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC------C
Confidence            77889999999999999999987 7888999999999999999987 57999999999999999988766543      2


Q ss_pred             CCCCeeEEEeCC-CCCEEEEEecCCcEEEEEcccceE
Q 016458          296 EIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKV  331 (389)
Q Consensus       296 ~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~  331 (389)
                      |...|++++|+| ++++|++++.||.|++||+.+...
T Consensus       310 H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          310 HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            344699999998 799999999999999999976433

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.7e-42  Score=343.94  Aligned_cols=321  Identities=22%  Similarity=0.339  Sum_probs=276.5

Q ss_pred             CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECC--CCc
Q 016458           45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP--TGQ  122 (389)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~  122 (389)
                      .+.....|+.........+.+|.+.|.+++|+|++++|++++.||+|++||+.+++.+..+..|...|.+++|+|  ++.
T Consensus       635 ~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  714 (1249)
T 3sfz_A          635 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL  714 (1249)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCC
T ss_pred             CCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCce
Confidence            344566788888889999999999999999999999999999999999999999999999999999999999999  566


Q ss_pred             EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc--
Q 016458          123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE--  200 (389)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--  200 (389)
                      ++++|+.||.|++||+.++.       ....+.+|.+.|.+++|+|++ .++++++.||.|++||+.++.....+...  
T Consensus       715 ~l~sg~~d~~v~vwd~~~~~-------~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~  786 (1249)
T 3sfz_A          715 LLATGSNDFFLKLWDLNQKE-------CRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRF  786 (1249)
T ss_dssp             EEEEEETTSCEEEEETTSSS-------EEEEECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCC
T ss_pred             EEEEEeCCCeEEEEECCCcc-------hhheecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceeccccc
Confidence            89999999999999998755       677788999999999999997 68999999999999999887655443210  


Q ss_pred             ------------------------------------------------ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceE
Q 016458          201 ------------------------------------------------FQSGHTADVLSVSISGSNSRMFVSGSCDSTAR  232 (389)
Q Consensus       201 ------------------------------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  232 (389)
                                                                      ....|...+.+++|+| ++.++++++.||.|+
T Consensus       787 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~  865 (1249)
T 3sfz_A          787 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVE  865 (1249)
T ss_dssp             C--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEE
T ss_pred             ccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEE
Confidence                                                            0126778899999999 889999999999999


Q ss_pred             EEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCcee---------------------------
Q 016458          233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL---------------------------  285 (389)
Q Consensus       233 i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------------------------  285 (389)
                      +||+.+. ..+..+.+|...|.+++|+|++++|++++.||.|++||+......                           
T Consensus       866 vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  944 (1249)
T 3sfz_A          866 LWNIDSR-LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIR  944 (1249)
T ss_dssp             EEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSS
T ss_pred             EEEcCCC-ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCc
Confidence            9999987 788889999999999999999999999999999999997532100                           


Q ss_pred             --eEeeccCC---CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEe
Q 016458          286 --QVYYQQHG---ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT  360 (389)
Q Consensus       286 --~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  360 (389)
                        ........   ......+.+++|+|+++++++|+.+|.|++||+.+++....+    .+|...|++++|+|+|++|++
T Consensus       945 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~----~~h~~~v~~l~~s~dg~~l~s 1020 (1249)
T 3sfz_A          945 GLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG----VGHKKAVRHIQFTADGKTLIS 1020 (1249)
T ss_dssp             SEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC----CCCSSCCCCEEECSSSSCEEE
T ss_pred             ceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec----ccCCCceEEEEECCCCCEEEE
Confidence              00000000   011235899999999999999999999999999999988888    789999999999999999999


Q ss_pred             eeCCCeeEEeecceecccCcccC
Q 016458          361 GSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       361 ~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      ++.||.|++    |++.+++...
T Consensus      1021 ~~~dg~i~v----wd~~~~~~~~ 1039 (1249)
T 3sfz_A         1021 SSEDSVIQV----WNWQTGDYVF 1039 (1249)
T ss_dssp             ECSSSBEEE----EETTTTEEEC
T ss_pred             EcCCCEEEE----EECCCCceEE
Confidence            999999999    9999987654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2e-42  Score=296.35  Aligned_cols=286  Identities=15%  Similarity=0.181  Sum_probs=244.3

Q ss_pred             eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC---eeEEEeeCCCcEEEEEECCCCc-EEEEecCCCcEE
Q 016458           59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCS  134 (389)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~  134 (389)
                      ......+|.+.|++++|+|++++|++++.||.|++|++.++.   ....+..|...|.+++|+|+++ +|++|+.||.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   82 (342)
T 1yfq_A            3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence            344567899999999999999999999999999999998887   3455668889999999999999 999999999999


Q ss_pred             EEeC-CCCCCCCCCCcceeeecc--cccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC---------CeeEEEecCccc
Q 016458          135 IFNL-NSPTDKDGNLPVSRMLSG--HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT---------GLRTSVFGGEFQ  202 (389)
Q Consensus       135 vw~~-~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~  202 (389)
                      +|++ ..+.        ...+.+  |...|.+++|+| + .++++++.|+.|++||+.+         ++....+     
T Consensus        83 ~wd~~~~~~--------~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-----  147 (342)
T 1yfq_A           83 KVDLIGSPS--------FQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-----  147 (342)
T ss_dssp             EECSSSSSS--------EEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-----
T ss_pred             EEEeccCCc--------eEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEE-----
Confidence            9999 7643        366677  999999999999 5 7899999999999999986         5544443     


Q ss_pred             CCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC-CCc-ceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEEC
Q 016458          203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-ASR-AVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDI  279 (389)
Q Consensus       203 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~  279 (389)
                       .+...+.+++|+| +.  +++++.|+.|++||++. ... .......|...+.+++|+| +++++++++.||.|++|++
T Consensus       148 -~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~  223 (342)
T 1yfq_A          148 -KVKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF  223 (342)
T ss_dssp             -SSCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred             -eeCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence             3788999999997 43  89999999999999997 433 3334556888999999999 9999999999999999999


Q ss_pred             CCC------ceeeEeeccCC----CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCC-CCCeeE
Q 016458          280 RTG------HQLQVYYQQHG----ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH-EGRITC  348 (389)
Q Consensus       280 ~~~------~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~  348 (389)
                      +..      +....+..+..    ..+...|.+++|+|++++|++++.||.|++||+.+++.+..+    ..| ..+|++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~~h~~~v~~  299 (342)
T 1yfq_A          224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF----AKFNEDSVVK  299 (342)
T ss_dssp             CTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC----CCCSSSEEEE
T ss_pred             cCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh----hcccCCCceE
Confidence            886      55555554322    012346999999999999999999999999999999999888    677 999999


Q ss_pred             EEECCCCCeEEeeeCCCe-eEE
Q 016458          349 LGLSADGSALCTGSWDTN-LKV  369 (389)
Q Consensus       349 ~~~~~~~~~l~~~~~dg~-i~i  369 (389)
                      ++  |++++|++++.||. .+.
T Consensus       300 ~~--~~~~~l~s~s~Dg~~~~~  319 (342)
T 1yfq_A          300 IA--CSDNILCLATSDDTFKTN  319 (342)
T ss_dssp             EE--ECSSEEEEEEECTHHHHC
T ss_pred             ec--CCCCeEEEEecCCccccc
Confidence            99  99999999999999 665

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.3e-43  Score=303.70  Aligned_cols=272  Identities=18%  Similarity=0.313  Sum_probs=229.8

Q ss_pred             cCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC-------eeEEEeeCCCcEEEEE
Q 016458           44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-------KTHAIKLPCAWVMTCA  116 (389)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-------~~~~~~~~~~~v~~~~  116 (389)
                      +.+.....|+.........+.+|...|.+++|+|++++|++|+.|+.|++||+.+..       ....+.+|.+.|.++.
T Consensus        85 s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~  164 (380)
T 3iz6_a           85 SQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ  164 (380)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCB
T ss_pred             eCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEE
Confidence            345556788888889999999999999999999999999999999999999986532       3455678999999999


Q ss_pred             ECCC-CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeee-----cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC-
Q 016458          117 FSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-  189 (389)
Q Consensus       117 ~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-  189 (389)
                      |+|+ +..|++|+.|+.|++||+.++.       ....+     .+|...|.++.|++.+..+|++|+.|+.|++||++ 
T Consensus       165 ~~~~~~~~l~s~s~D~~i~~wd~~~~~-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~  237 (380)
T 3iz6_a          165 YVPDQETRLITGSGDQTCVLWDVTTGQ-------RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI  237 (380)
T ss_dssp             CCSSSSSCEEEECTTSCEEEECTTTCC-------EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTT
T ss_pred             EecCCCCEEEEECCCCcEEEEEcCCCc-------EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCC
Confidence            9996 4679999999999999998754       23333     57899999999988555899999999999999998 


Q ss_pred             CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec-------cceEEEEEecCC
Q 016458          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-------GDVNTVKFFPDG  262 (389)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~i~~~~~~~~~  262 (389)
                      .+.....+     .+|...|.+++|+| ++.+|++|+.||.|++||++++ ..+..+..+.       ..|.+++|+|++
T Consensus       238 ~~~~~~~~-----~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  310 (380)
T 3iz6_a          238 TSRAVRTY-----HGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTG-HQLQVYNREPDRNDNELPIVTSVAFSISG  310 (380)
T ss_dssp             TCCCCEEE-----CCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTT-EEEEEECCCCSSSCCSSCSCSEEEECSSS
T ss_pred             CCcceEEE-----CCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCC-cEEEEecccccccccccCceEEEEECCCC
Confidence            44666666     68999999999999 8899999999999999999987 5666665432       248999999999


Q ss_pred             CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce
Q 016458          263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK  330 (389)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (389)
                      ++|++|+.||.|++||+..++....+.... ..|...|++++|+|+|++|++|+.||.|++|++...+
T Consensus       311 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          311 RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ-NSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             SEEEEECTTSCEEEEETTTCCEEEEECCSC-SSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             CEEEEEECCCCEEEEECCCCceEEEEeccc-CCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            999999999999999999888776653221 2345569999999999999999999999999987543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.8e-43  Score=304.43  Aligned_cols=290  Identities=12%  Similarity=0.098  Sum_probs=221.6

Q ss_pred             CcEEEEEEcCCCCeEEEEecCC-------cEEEEeCCCCCee----------EEEeeCCCcEEEEEECCCCcEEEEe---
Q 016458           68 GKVYSLDWTSERNRIVSASQDG-------RLIVWNALTSQKT----------HAIKLPCAWVMTCAFSPTGQSVACG---  127 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg-------~v~iw~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~l~~~---  127 (389)
                      -||+|++|+||+++|++|+.+.       .|++|++..+...          ..+..+...|.+++++  ++.+++|   
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~   92 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE   92 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence            4899999999999999987543       5999998765421          2334566677777664  5556654   


Q ss_pred             --------cCCCcEEEEeCCCCCCCCCCCcceee-----ecccccceEEEEEeeCCCcEEE--EeeCCCeEEEEeCCCCe
Q 016458          128 --------GLDSVCSIFNLNSPTDKDGNLPVSRM-----LSGHKGYVSCCQYVPDEDTHLI--TSSGDQTCVLWDITTGL  192 (389)
Q Consensus       128 --------~~dg~i~vw~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~--~~~~dg~i~iwd~~~~~  192 (389)
                              +.|+.+++|++......   ......     ...+...+.+++|+|+| ++++  +++.|++|++||+.++.
T Consensus        93 ~~~~l~s~~~d~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~~  168 (365)
T 4h5i_A           93 NSTKITQGKGNKHLRKFKYDKVNDQ---LEFLTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDLT  168 (365)
T ss_dssp             CHHHHHHTSCCCCEEEEEEETTTTE---EEEEEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTTE
T ss_pred             CccEEEEecCCCcEEEEEecCCCce---EEEeeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCCc
Confidence                    45778999998764311   111111     12344568899999998 5554  45579999999999999


Q ss_pred             eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcce-eEEeeeccceEEEEEecCCCEEEEEecC
Q 016458          193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHGHEGDVNTVKFFPDGNRFGTGSDD  271 (389)
Q Consensus       193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d  271 (389)
                      ....+      .|...|.+++|+| +++++++++.+ .+.+|+..++.... .....|...|.+++|+|+++++++++.|
T Consensus       169 ~~~~~------~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d  240 (365)
T 4h5i_A          169 EKFEI------ETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLK  240 (365)
T ss_dssp             EEEEE------ECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEES
T ss_pred             EEEEe------CCCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecC
Confidence            88877      4677899999999 88899988854 56667666553322 2334678889999999999999999988


Q ss_pred             C----eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCee
Q 016458          272 G----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT  347 (389)
Q Consensus       272 g----~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  347 (389)
                      +    .++.|++........... ....+...|++++|+|+|++||+|+.|+.|+|||+.+++++..+.   .+|..+|+
T Consensus       241 ~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~---~gH~~~V~  316 (365)
T 4h5i_A          241 KGKGIVLTKISIKSGNTSVLRSK-QVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK---QAHSFAIT  316 (365)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEE-EEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET---TSSSSCEE
T ss_pred             CcceeEEeecccccceecceeee-eecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec---CcccCCEE
Confidence            7    688899877654322111 112234469999999999999999999999999999999988753   68999999


Q ss_pred             EEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          348 CLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       348 ~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      +++|+|||++|++|+.|++|+|    |++.++
T Consensus       317 ~v~fSpdg~~laS~S~D~tvrv----w~ip~~  344 (365)
T 4h5i_A          317 EVTISPDSTYVASVSAANTIHI----IKLPLN  344 (365)
T ss_dssp             EEEECTTSCEEEEEETTSEEEE----EECCTT
T ss_pred             EEEECCCCCEEEEEeCCCeEEE----EEcCCC
Confidence            9999999999999999999999    999754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-43  Score=313.73  Aligned_cols=295  Identities=12%  Similarity=0.117  Sum_probs=230.1

Q ss_pred             ccCcEEEEEEcCCC---------CeEEE-------------------EecCCcEEEEeCCCCCee----EEEeeCCCcEE
Q 016458           66 HAGKVYSLDWTSER---------NRIVS-------------------ASQDGRLIVWNALTSQKT----HAIKLPCAWVM  113 (389)
Q Consensus        66 h~~~v~~~~~~~~~---------~~l~~-------------------~~~dg~v~iw~~~~~~~~----~~~~~~~~~v~  113 (389)
                      +.+.|.+|+|+|++         ++||+                   ++.|++|+|||+.+++..    ..+..|.+.|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            57889999999976         56666                   447789999999887643    34567778899


Q ss_pred             EEEECCC------CcEEEEecCCCcEEEEeCCCCCCCC----CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeE
Q 016458          114 TCAFSPT------GQSVACGGLDSVCSIFNLNSPTDKD----GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC  183 (389)
Q Consensus       114 ~~~~~~~------~~~l~~~~~dg~i~vw~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  183 (389)
                      +++|+|+      +.+||+++.||+|++||+..+....    ........+.+|...|.+++|+++  ..|++|+.||+|
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV  289 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFV  289 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEE
Confidence            9999996      5799999999999999998653210    011123467789999999999985  479999999999


Q ss_pred             EEEeCCCCe-eEEEecCcccCCCCCCeeEE--EeeCCCC-cEEEEeeCCCceEEEeCCCCCcceeEEeeecc--ceEEEE
Q 016458          184 VLWDITTGL-RTSVFGGEFQSGHTADVLSV--SISGSNS-RMFVSGSCDSTARLWDTRVASRAVRTFHGHEG--DVNTVK  257 (389)
Q Consensus       184 ~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~i~~~~  257 (389)
                      ++||++++. ....+     ..|...|.++  .++| ++ .+|++++.|++|++||+++. .....+.+|..  .|.+++
T Consensus       290 ~lWD~~~~~~~~~~~-----~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~-~~~~~~~~~~~~~~v~~v~  362 (524)
T 2j04_B          290 AEFDLTDPEVPSFYD-----QVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDI-ATTKTTVSRFRGSNLVPVV  362 (524)
T ss_dssp             EEEETTBCSSCSEEE-----ECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGH-HHHCEEEEECSCCSCCCEE
T ss_pred             EEEECCCCCCceEEe-----ecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCC-CcccccccccccCcccceE
Confidence            999998763 33344     6899999999  4555 65 89999999999999999976 66666777754  588999


Q ss_pred             EecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc-----e--
Q 016458          258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-----K--  330 (389)
Q Consensus       258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~--  330 (389)
                      |+|+++.+++++.|+.|++||++++..+..+..+.     ..|++++|+|+|++|++|+.||.|++||+...     +  
T Consensus       363 fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~-----~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~  437 (524)
T 2j04_B          363 YCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE-----TTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNS  437 (524)
T ss_dssp             EETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS-----SCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC---
T ss_pred             eCCCcCeEEEeCCCCcEEEEECcccccceeeecCC-----CceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccC
Confidence            99999999999999999999999988777765533     35999999999999999999999999985321     0  


Q ss_pred             -------EEEee--------------------------cCcCCCCCCCeeEEEECCCCC---eEEeeeCCCeeEEeecce
Q 016458          331 -------VVLNL--------------------------GSLQNSHEGRITCLGLSADGS---ALCTGSWDTNLKVNLGFW  374 (389)
Q Consensus       331 -------~~~~~--------------------------~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~i~~~~W  374 (389)
                             .+..+                          .....+|...|.+++|+|++.   .+++|+.||.|+|    |
T Consensus       438 ~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrl----w  513 (524)
T 2j04_B          438 SATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTL----E  513 (524)
T ss_dssp             ---CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEE----E
T ss_pred             ccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEE----E
Confidence                   11011                          011145888999999999954   9999999999999    9


Q ss_pred             eccc
Q 016458          375 RVQE  378 (389)
Q Consensus       375 ~~~~  378 (389)
                      ++.-
T Consensus       514 ~l~~  517 (524)
T 2j04_B          514 YLSL  517 (524)
T ss_dssp             ECSC
T ss_pred             Eccc
Confidence            9864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.5e-41  Score=301.65  Aligned_cols=302  Identities=19%  Similarity=0.264  Sum_probs=259.0

Q ss_pred             cCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEEC--CCC
Q 016458           44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS--PTG  121 (389)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~--~~~  121 (389)
                      +.+.....|+....+....+.+|.+.|++++|+|++ +|++|+.||+|++||+.+++.+..+..|...|.+++|+  +++
T Consensus       139 s~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  217 (464)
T 3v7d_B          139 ADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI  217 (464)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSC
T ss_pred             cCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCC
Confidence            345667788889999999999999999999999988 99999999999999999999999999999999999998  578


Q ss_pred             cEEEEecCCCcEEEEeCCCCCCCCC----------------CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEE
Q 016458          122 QSVACGGLDSVCSIFNLNSPTDKDG----------------NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL  185 (389)
Q Consensus       122 ~~l~~~~~dg~i~vw~~~~~~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  185 (389)
                      .++++|+.||.|++||+........                .......+.+|...+.++  ++++ .++++++.||.|++
T Consensus       218 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~v  294 (464)
T 3v7d_B          218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIV  294 (464)
T ss_dssp             EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSCEEE
T ss_pred             CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCeEEE
Confidence            9999999999999999987542111                011255677888888887  4555 68999999999999


Q ss_pred             EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEE
Q 016458          186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF  265 (389)
Q Consensus       186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  265 (389)
                      ||+.+++....+     ..|...|.+++|+| +++++++|+.||.|++||++++ ..+..+.+|...|.+++|+  +.+|
T Consensus       295 wd~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l  365 (464)
T 3v7d_B          295 WDVAQMKCLYIL-----SGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLS--DKFL  365 (464)
T ss_dssp             EETTTTEEEEEE-----CCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEC--SSEE
T ss_pred             EECCCCcEEEEe-----cCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-cEEEEEeCCCCcEEEEEEc--CCEE
Confidence            999999999888     78999999999999 8889999999999999999987 7888999999999999997  5799


Q ss_pred             EEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCC
Q 016458          266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR  345 (389)
Q Consensus       266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  345 (389)
                      ++++.||.|++||++++..........      .+..++|+++++++++|+ ||.|++||+.+++.+....   ..|...
T Consensus       366 ~s~s~dg~v~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~---~~~~~~  435 (464)
T 3v7d_B          366 VSAAADGSIRGWDANDYSRKFSYHHTN------LSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI---LKDADQ  435 (464)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECTT------CCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCT---TTTCSE
T ss_pred             EEEeCCCcEEEEECCCCceeeeecCCC------CccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhh---ccCCCc
Confidence            999999999999999887665553222      377889999999999998 8999999999999987643   678899


Q ss_pred             eeEEEECCCCCeEEeeeCCCeeEE
Q 016458          346 ITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       346 v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      |.+++|+ +..++++++.||.+.+
T Consensus       436 v~~v~~~-~~~l~~~~~~~g~~~i  458 (464)
T 3v7d_B          436 IWSVNFK-GKTLVAAVEKDGQSFL  458 (464)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEE
T ss_pred             EEEEEec-CCEEEEEEEeCCeEEE
Confidence            9999997 4445566667777666

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2e-43  Score=311.27  Aligned_cols=283  Identities=19%  Similarity=0.278  Sum_probs=239.5

Q ss_pred             cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC
Q 016458           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL  148 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  148 (389)
                      .+++++|+|++++|++++.||.|++||+.+++....+..+ ..+....|++++++|++|+.||.|++||+..+.      
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------  130 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL------  130 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE------
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc------
Confidence            3558999999999999999999999999887766555555 445556789999999999999999999998644      


Q ss_pred             cceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC
Q 016458          149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  228 (389)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  228 (389)
                       ....+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++....+     ..|...|.+++|+| ++.+|++++.|
T Consensus       131 -~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~s~~~d  202 (420)
T 3vl1_A          131 -QREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTL-----IGHRATVTDIAIID-RGRNVLSASLD  202 (420)
T ss_dssp             -EEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCEEE-----ECCSSCEEEEEEET-TTTEEEEEETT
T ss_pred             -eeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCceEE-----cCCCCcEEEEEEcC-CCCEEEEEcCC
Confidence             556667999999999999997 68999999999999999999888888     68999999999999 88899999999


Q ss_pred             CceEEEeCCCCCcceeEEee---eccce---------------------EEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458          229 STARLWDTRVASRAVRTFHG---HEGDV---------------------NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ  284 (389)
Q Consensus       229 g~i~i~d~~~~~~~~~~~~~---~~~~i---------------------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  284 (389)
                      |.|++||+++. +.+..+..   |...+                     .+++|+|++++|++++.||.|++||+++++.
T Consensus       203 ~~v~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  281 (420)
T 3vl1_A          203 GTIRLWECGTG-TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ  281 (420)
T ss_dssp             SCEEEEETTTT-EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE
T ss_pred             CcEEEeECCCC-ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce
Confidence            99999999987 66666664   33344                     4455578899999999999999999999887


Q ss_pred             eeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccceE-EEeecCcCCCCCCCeeEEEECCCCCeEEeee
Q 016458          285 LQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRITCLGLSADGSALCTGS  362 (389)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  362 (389)
                      ...+...    +...+.+++|+|+++ +|++|+.||.|++||+.+++. +..+.   ..|...|.++.+ +++++|++++
T Consensus       282 ~~~~~~~----~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~~~~~~v~~~~~-~~~~~l~s~~  353 (420)
T 3vl1_A          282 TIQLPSK----FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL---INEGTPINNVYF-AAGALFVSSG  353 (420)
T ss_dssp             EEEECCT----TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE---ESTTSCEEEEEE-ETTEEEEEET
T ss_pred             eEEcccc----cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh---ccCCCCceEEEe-CCCCEEEEec
Confidence            7776543    233699999999999 999999999999999998743 55552   347778888866 4788999999


Q ss_pred             CCCeeEEeecceecccC
Q 016458          363 WDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       363 ~dg~i~i~~~~W~~~~~  379 (389)
                      .||.|++    |++..+
T Consensus       354 ~d~~v~i----w~~~~~  366 (420)
T 3vl1_A          354 FDTSIKL----DIISDP  366 (420)
T ss_dssp             TTEEEEE----EEECCT
T ss_pred             CCccEEE----EeccCC
Confidence            9999999    999874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.5e-41  Score=293.81  Aligned_cols=297  Identities=16%  Similarity=0.205  Sum_probs=244.4

Q ss_pred             ccCCCcceeeeecccccCcEEEEEEcCC---CCeEEEEecCCcEEEEeCCC-CCee-EEEeeCCCcEEEEEECCCCcEEE
Q 016458           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSE---RNRIVSASQDGRLIVWNALT-SQKT-HAIKLPCAWVMTCAFSPTGQSVA  125 (389)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~---~~~l~~~~~dg~v~iw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~  125 (389)
                      .+...+......+.+|.+.|++++|+|+   |++|++|+.||.|++||+.+ +... ..+..|...|.+++|+|++++|+
T Consensus        23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  102 (368)
T 3mmy_A           23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF  102 (368)
T ss_dssp             CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence            3445566788899999999999999999   59999999999999999987 5554 67888999999999999999999


Q ss_pred             EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE--eeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccC
Q 016458          126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY--VPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS  203 (389)
Q Consensus       126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  203 (389)
                      +++.||.|++||+.++.        ......|...|.+++|  ++++ .+|++++.||.|++||+++++....+     .
T Consensus       103 s~~~dg~v~iwd~~~~~--------~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~-----~  168 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQ--------AIQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVL-----Q  168 (368)
T ss_dssp             EEETTSEEEEEETTTTE--------EEEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEE-----E
T ss_pred             EEcCCCcEEEEEcCCCC--------ceeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEE-----e
Confidence            99999999999998754        3346679999999999  7776 78999999999999999999888877     2


Q ss_pred             CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-eeccceEEEEEecCCCE----EEEEecCCeEEEEE
Q 016458          204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNR----FGTGSDDGTCRLFD  278 (389)
Q Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~----l~~~~~dg~i~i~d  278 (389)
                      . ...+.++.+.+   ..+++++.++.+.+||++.......... .+...+.++++.++...    +++++.||.|++||
T Consensus       169 ~-~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~  244 (368)
T 3mmy_A          169 L-PERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY  244 (368)
T ss_dssp             C-SSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred             c-CCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence            3 34677777764   4788888999999999987643333322 23445677777766554    99999999999999


Q ss_pred             CCCCc---eeeEeeccCC-------CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeE
Q 016458          279 IRTGH---QLQVYYQQHG-------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  348 (389)
Q Consensus       279 ~~~~~---~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  348 (389)
                      ++...   ....+..+..       ..+...|++++|+|++++|++++.||.|++||+.+++.+..+    ..|..+|++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~  320 (368)
T 3mmy_A          245 INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS----EQLDQPISA  320 (368)
T ss_dssp             SSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC----CCCSSCEEE
T ss_pred             cCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe----cCCCCCceE
Confidence            99873   3444433221       011125999999999999999999999999999999999988    789999999


Q ss_pred             EEECCCCCeEEeeeCCCeeEE
Q 016458          349 LGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       349 ~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      ++|+|+|++|++++.|+..+.
T Consensus       321 ~~~s~~g~~l~~~s~d~~~~~  341 (368)
T 3mmy_A          321 CCFNHNGNIFAYASSYDWSKG  341 (368)
T ss_dssp             EEECTTSSCEEEEECCCSTTC
T ss_pred             EEECCCCCeEEEEeccccccc
Confidence            999999999999999987766

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.5e-40  Score=281.83  Aligned_cols=279  Identities=22%  Similarity=0.403  Sum_probs=236.8

Q ss_pred             EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe--eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458           70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (389)
Q Consensus        70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (389)
                      +++|+||+++ +||+| .|++|+|||+.+++.+..+.  .|...|.+++|+|++++|++|+.||.|++|++.+++     
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-----  100 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----  100 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-----
Confidence            5789999986 77766 58999999999999888776  466789999999999999999999999999998765     


Q ss_pred             CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee-EEEecCcccCCCCCCeeEEEeeCCCCcEEEEee
Q 016458          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS  226 (389)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  226 (389)
                        ....+.+|...+.++.+.+   ..+++++.++.+++|+...... ...+     ..|...+..+.+.+ .++++++++
T Consensus       101 --~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~l~s~~  169 (318)
T 4ggc_A          101 --RLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATL-----SGHSQEVCGLRWAP-DGRHLASGG  169 (318)
T ss_dssp             --EEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEE-----ECCSSCEEEEEECT-TSSEEEEEE
T ss_pred             --eEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEE-----cCccCceEEEEEcC-CCCEEEEEe
Confidence              6777889998888766553   6899999999999999987644 3444     68899999999998 888999999


Q ss_pred             CCCceEEEeCCCCC---cceeEEeeeccceEEEEEecCCCEE---EEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe
Q 016458          227 CDSTARLWDTRVAS---RAVRTFHGHEGDVNTVKFFPDGNRF---GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV  300 (389)
Q Consensus       227 ~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i  300 (389)
                      .||.|++||+++..   ........+.+.|.+++++|++..+   ++++.++.|++||..............      .+
T Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~------~v  243 (318)
T 4ggc_A          170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS------QV  243 (318)
T ss_dssp             TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS------CE
T ss_pred             cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee------ee
Confidence            99999999998753   2345566788899999999966533   466788999999999887766554332      38


Q ss_pred             eEEEeCCCCCEEEEEe--cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          301 TSIAFSISGRLLFAGY--SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       301 ~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      ..+.|+|+++.+++++  .|+.|++||+.+++.+..+    .+|.+.|++++|+|+|++|++|+.||+|+|    ||+.+
T Consensus       244 ~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l----~gH~~~V~~l~~spdg~~l~S~s~D~~v~i----Wd~~~  315 (318)
T 4ggc_A          244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL----KGHTSRVLSLTMSPDGATVASAAADETLRL----WRCFE  315 (318)
T ss_dssp             EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSSCEEEEETTTEEEE----ECCSC
T ss_pred             eeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE----cCCCCCEEEEEEcCCCCEEEEEecCCeEEE----EECCC
Confidence            9999999999887654  7999999999999999999    799999999999999999999999999999    99976


Q ss_pred             Cc
Q 016458          379 GA  380 (389)
Q Consensus       379 ~~  380 (389)
                      ..
T Consensus       316 ~d  317 (318)
T 4ggc_A          316 LD  317 (318)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.2e-41  Score=299.25  Aligned_cols=281  Identities=25%  Similarity=0.429  Sum_probs=243.4

Q ss_pred             eeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458           60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN  139 (389)
Q Consensus        60 ~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~  139 (389)
                      .....+|...|+|++|  ++++|++|+.||.|++||+.+++....+..|...|.+++|  ++++|++|+.||.|++||+.
T Consensus       126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence            3344567788999987  6889999999999999999999999999999999999999  78899999999999999998


Q ss_pred             CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE---EEecCcccCCCCCCeeEEEeeC
Q 016458          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT---SVFGGEFQSGHTADVLSVSISG  216 (389)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~  216 (389)
                      ++.       ....+.+|...|.++.|++   .++++|+.||.|++||+.++...   ..+     ..|...|.++++  
T Consensus       202 ~~~-------~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~v~~~~~--  264 (435)
T 1p22_A          202 TGE-------MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVL-----VGHRAAVNVVDF--  264 (435)
T ss_dssp             SCC-------EEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEE-----CCCSSCEEEEEE--
T ss_pred             CCc-------EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEe-----cCCCCcEEEEEe--
Confidence            755       6778889999999999974   58999999999999999987655   344     688999999999  


Q ss_pred             CCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCC
Q 016458          217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE  296 (389)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  296 (389)
                       +++++++|+.||.|++||+++. ..+..+.+|...|.+++|+  +.++++|+.||.|++||+++++.+..+..+.    
T Consensus       265 -~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~----  336 (435)
T 1p22_A          265 -DDKYIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE----  336 (435)
T ss_dssp             -ETTEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS----
T ss_pred             -CCCEEEEEeCCCeEEEEECCcC-cEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc----
Confidence             4578999999999999999987 7888899999999999994  6799999999999999999998888775543    


Q ss_pred             CCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce---------EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCee
Q 016458          297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK---------VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL  367 (389)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  367 (389)
                       ..|.+++|  ++.+|++|+.||.|++||+.++.         .+..+    .+|.+.|++++|  ++.+|++++.||.|
T Consensus       337 -~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~--~~~~l~s~s~Dg~i  407 (435)
T 1p22_A          337 -ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL----VEHSGRVFRLQF--DEFQIVSSSHDDTI  407 (435)
T ss_dssp             -SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE----CCCSSCCCCEEE--CSSCEEECCSSSEE
T ss_pred             -CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec----cCCCCCeEEEEe--CCCEEEEEeCCCEE
Confidence             35999998  78899999999999999998766         67777    789999999999  68899999999999


Q ss_pred             EEeecceecccCccc
Q 016458          368 KVNLGFWRVQEGALS  382 (389)
Q Consensus       368 ~i~~~~W~~~~~~~~  382 (389)
                      ++    ||+.++...
T Consensus       408 ~i----wd~~~~~~~  418 (435)
T 1p22_A          408 LI----WDFLNDPAA  418 (435)
T ss_dssp             EE----EC-------
T ss_pred             EE----EECCCCCCc
Confidence            99    999887543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.7e-42  Score=303.56  Aligned_cols=300  Identities=12%  Similarity=0.175  Sum_probs=232.9

Q ss_pred             cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC-----------eeEEEeeCC------------CcEEEEEECCCC
Q 016458           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-----------KTHAIKLPC------------AWVMTCAFSPTG  121 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~  121 (389)
                      .|.+.|++++|+|++++||+|+.||.|+|||+.+++           ....+..|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            367899999999999999999999999999998877           477888887            889999999998


Q ss_pred             --cEEEEecCCCcEEEEeCCCCCCC--------------------CCCCc------------ce-eeecccccceEEEEE
Q 016458          122 --QSVACGGLDSVCSIFNLNSPTDK--------------------DGNLP------------VS-RMLSGHKGYVSCCQY  166 (389)
Q Consensus       122 --~~l~~~~~dg~i~vw~~~~~~~~--------------------~~~~~------------~~-~~~~~~~~~v~~~~~  166 (389)
                        ..|++++.|+.|++|++......                    ....+            .. ....+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999998752210                    00000            00 123679999999999


Q ss_pred             eeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEec--CcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc-
Q 016458          167 VPDEDTHLITSSGDQTCVLWDITTG-LRTSVFG--GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-  242 (389)
Q Consensus       167 ~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-  242 (389)
                      +|++ .+|++| .|+.|++||+.+. .....+.  ......|...|.+++|+|.+.++|++++.||.|++||+++. .. 
T Consensus       186 ~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~  262 (447)
T 3dw8_B          186 NSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS-ALC  262 (447)
T ss_dssp             CTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC-SSS
T ss_pred             cCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC-ccc
Confidence            9987 688888 7999999999843 3333221  11125788999999999943489999999999999999987 43 


Q ss_pred             ---eeEEeeecc------------ceEEEEEecCCCEEEEEecCCeEEEEECCC-CceeeEeeccCCCC----------C
Q 016458          243 ---VRTFHGHEG------------DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGEN----------E  296 (389)
Q Consensus       243 ---~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~----------~  296 (389)
                         ...+..|..            .|.+++|+|++++|++++. +.|++||++. ++.+..+..+....          .
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  341 (447)
T 3dw8_B          263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC  341 (447)
T ss_dssp             CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred             cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence               677887776            8999999999999999999 9999999997 77766665442110          0


Q ss_pred             CCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCc----------------------------CCCCCCCeeE
Q 016458          297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL----------------------------QNSHEGRITC  348 (389)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------------------~~~~~~~v~~  348 (389)
                      ...+..++|+|++++|++|+.||.|++||+.+++.+......                            ...+...|.+
T Consensus       342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  421 (447)
T 3dw8_B          342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILH  421 (447)
T ss_dssp             GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCE
T ss_pred             cccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeE
Confidence            001334999999999999999999999999988775421100                            0134567999


Q ss_pred             EEECCCCCeEEeeeCCCeeEE
Q 016458          349 LGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       349 ~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      ++|+|++.+|++++.++ +++
T Consensus       422 ~~~~p~~~~la~~~~~~-~~~  441 (447)
T 3dw8_B          422 TAWHPKENIIAVATTNN-LYI  441 (447)
T ss_dssp             EEECSSSSEEEEECSSC-EEE
T ss_pred             EEECCCCCEEEEEecce-eee
Confidence            99999999999998876 666

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.7e-41  Score=336.91  Aligned_cols=294  Identities=26%  Similarity=0.351  Sum_probs=264.2

Q ss_pred             eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeC
Q 016458           59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL  138 (389)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~  138 (389)
                      ....+.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~  686 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS  686 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence            44578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcceeeecccccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC
Q 016458          139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS  217 (389)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  217 (389)
                      .++.       ....+.+|...|.+++|+|++ ..++++|+.||.|++||+.++.....+     .+|...|.+++|+| 
T Consensus       687 ~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~-----~~h~~~v~~~~~sp-  753 (1249)
T 3sfz_A          687 ATGK-------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM-----FGHTNSVNHCRFSP-  753 (1249)
T ss_dssp             TTCC-------EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE-----CCCSSCEEEEEECS-
T ss_pred             CCCc-------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee-----cCCCCCEEEEEEec-
Confidence            8765       677888999999999999963 357889999999999999999999888     78999999999999 


Q ss_pred             CCcEEEEeeCCCceEEEeCCCCCcceeEEee-------------eccceEEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHG-------------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ  284 (389)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  284 (389)
                      +++++++++.||.|++||+++. .....+..             +...+.+++|+|+++.+++++ ++.+.+||+.++..
T Consensus       754 ~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~  831 (1249)
T 3sfz_A          754 DDELLASCSADGTLRLWDVRSA-NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGL  831 (1249)
T ss_dssp             STTEEEEEESSSEEEEEEGGGT-EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCE
T ss_pred             CCCEEEEEECCCeEEEEeCCCC-cccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCc
Confidence            8889999999999999999876 44333321             233688999999999999887 68999999999988


Q ss_pred             eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC
Q 016458          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  364 (389)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  364 (389)
                      ...+...+    ...+.+++|+|+++++++++.||.|++||+.++.....+    .+|...|++++|+|++++|++++.|
T Consensus       832 ~~~~~~~~----~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~----~~h~~~v~~v~~spdg~~l~s~s~d  903 (1249)
T 3sfz_A          832 LAEIHTGH----HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC----RGHLSWVHGVMFSPDGSSFLTASDD  903 (1249)
T ss_dssp             EEEEECSS----SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE----CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eeEEcCCC----CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec----CCCccceEEEEECCCCCEEEEEeCC
Confidence            87775433    336999999999999999999999999999999999988    7999999999999999999999999


Q ss_pred             CeeEEeecceecccC
Q 016458          365 TNLKVNLGFWRVQEG  379 (389)
Q Consensus       365 g~i~i~~~~W~~~~~  379 (389)
                      |.|++    |++.++
T Consensus       904 g~v~v----w~~~~~  914 (1249)
T 3sfz_A          904 QTIRV----WETKKV  914 (1249)
T ss_dssp             SCEEE----EEHHHH
T ss_pred             CeEEE----EEcccc
Confidence            99999    998754

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-41  Score=290.52  Aligned_cols=282  Identities=18%  Similarity=0.267  Sum_probs=223.7

Q ss_pred             ccCCCCCcccCCCccee---eeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--eeEEEeeCCCcEEEEEE
Q 016458           43 RSQGRAPVSFGPTDLVC---CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAF  117 (389)
Q Consensus        43 ~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~  117 (389)
                      ...+.....|+......   .....+|.+.|.+++|+|++++|++|+.|++|++|+...+.  .+..+..|...|.+++|
T Consensus        34 ~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~  113 (345)
T 3fm0_A           34 CGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAW  113 (345)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEE
T ss_pred             EcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEE
Confidence            34455666776654432   22347899999999999999999999999999999988764  46778889999999999


Q ss_pred             CCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee--EE
Q 016458          118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR--TS  195 (389)
Q Consensus       118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~  195 (389)
                      +|++++|++|+.|+.|++||+....    .......+.+|...|.+++|+|++ .+|++++.|+.|++||..++..  ..
T Consensus       114 sp~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~  188 (345)
T 3fm0_A          114 APSGNLLATCSRDKSVWVWEVDEED----EYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCA  188 (345)
T ss_dssp             CTTSSEEEEEETTSCEEEEEECTTS----CEEEEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             eCCCCEEEEEECCCeEEEEECCCCC----CeEEEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEEEE
Confidence            9999999999999999999998643    223456778899999999999997 6899999999999999988753  34


Q ss_pred             EecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC--------------cceeEEee-eccceEEEEEec
Q 016458          196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--------------RAVRTFHG-HEGDVNTVKFFP  260 (389)
Q Consensus       196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~-~~~~i~~~~~~~  260 (389)
                      .+     .+|...|.+++|+| ++++|++++.|+.|++||.....              ..+..+.+ |...|.+++|+|
T Consensus       189 ~~-----~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~  262 (345)
T 3fm0_A          189 TL-----EGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ  262 (345)
T ss_dssp             EE-----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT
T ss_pred             Ee-----cCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec
Confidence            55     68999999999999 88999999999999999974321              11223333 788999999999


Q ss_pred             CCCEEEEEecCCeEEEEECCCCce----eeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccceEEEee
Q 016458          261 DGNRFGTGSDDGTCRLFDIRTGHQ----LQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       261 ~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  335 (389)
                      ++..|++++.|+.|++|+......    ...+.......|...|++++|+|++. +|++|+.||.|++|++.+++.+...
T Consensus       263 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          263 LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence            999999999999999999876431    11122222234556799999999984 9999999999999999888766544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=8.9e-41  Score=296.35  Aligned_cols=304  Identities=26%  Similarity=0.414  Sum_probs=266.4

Q ss_pred             ccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc
Q 016458           43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ  122 (389)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~  122 (389)
                      ...+.....|+....++...+.+|.+.|.+++|+  +++|++|+.||+|++||+.+++.+..+..|...|.+++|+  ++
T Consensus       135 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~  210 (445)
T 2ovr_B          135 GSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EK  210 (445)
T ss_dssp             EETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TT
T ss_pred             EECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CC
Confidence            3445667788888999999999999999999998  4599999999999999999999999999999999999995  67


Q ss_pred             EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCccc
Q 016458          123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ  202 (389)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  202 (389)
                      .+++|+.||.|++||+.++.       ....+.+|...|.++.|  ++ .++++++.||.|++||+.++.....+     
T Consensus       211 ~l~s~s~dg~i~~wd~~~~~-------~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~-----  275 (445)
T 2ovr_B          211 RVVSGSRDATLRVWDIETGQ-------CLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTL-----  275 (445)
T ss_dssp             EEEEEETTSEEEEEESSSCC-------EEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEE-----
T ss_pred             EEEEEeCCCEEEEEECCCCc-------EEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEe-----
Confidence            89999999999999998754       56778899999999999  43 68999999999999999999999888     


Q ss_pred             CCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCC
Q 016458          203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG  282 (389)
Q Consensus       203 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  282 (389)
                      ..|...|.++.+   ++.++++++.||.|++||+++. +.+..+.+|...+.++.++  ++++++++.||.|++||++++
T Consensus       276 ~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~  349 (445)
T 2ovr_B          276 QGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG  349 (445)
T ss_dssp             CCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC
T ss_pred             cCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCC-CEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC
Confidence            688999999999   5678999999999999999987 7888889999999888874  679999999999999999999


Q ss_pred             ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCc-CCCCCCCeeEEEECCCCCeEEee
Q 016458          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL-QNSHEGRITCLGLSADGSALCTG  361 (389)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~  361 (389)
                      +.+..+....  .+...|++++|+  +++|++|+.||.|++||+.+++.+..+... ...|.+.|.+++|+|++.++++|
T Consensus       350 ~~~~~~~~~~--~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~  425 (445)
T 2ovr_B          350 QCLQTLQGPN--KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG  425 (445)
T ss_dssp             CEEEEECSTT--SCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred             cEEEEEccCC--CCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEc
Confidence            8887775422  234469999995  679999999999999999999888777311 14678899999999999999999


Q ss_pred             eCCCe----eEEeecceecccC
Q 016458          362 SWDTN----LKVNLGFWRVQEG  379 (389)
Q Consensus       362 ~~dg~----i~i~~~~W~~~~~  379 (389)
                      +.||.    +.|    ||+...
T Consensus       426 ~~dg~~~~~l~v----~df~~~  443 (445)
T 2ovr_B          426 SRNGTEETKLLV----LDFDVD  443 (445)
T ss_dssp             CSSSSSCCEEEE----EECCCC
T ss_pred             ccCCCCccEEEE----EECCCC
Confidence            99998    888    998753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4e-41  Score=298.56  Aligned_cols=289  Identities=27%  Similarity=0.484  Sum_probs=252.8

Q ss_pred             CcceeeeecccccCcE-EEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcE
Q 016458           55 TDLVCCRTLQGHAGKV-YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC  133 (389)
Q Consensus        55 ~~~~~~~~l~~h~~~v-~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  133 (389)
                      ......+.+.+|.+.| .|+.+  ++++|++|+.||+|++||+.+++.+..+..|...|.+++|+  ++++++|+.||.|
T Consensus       106 ~~~~~~~~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i  181 (445)
T 2ovr_B          106 GELKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTL  181 (445)
T ss_dssp             SCCCCCEEEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred             CCcceeEEecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeE
Confidence            3445667899999975 66555  67899999999999999999999999999999999999997  6799999999999


Q ss_pred             EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (389)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  213 (389)
                      ++||+.++.       ....+.+|...|.++.|++   ..+++|+.||.|++||+.+++....+     ..|...+.++.
T Consensus       182 ~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~~~  246 (445)
T 2ovr_B          182 KVWNAETGE-------CIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVL-----MGHVAAVRCVQ  246 (445)
T ss_dssp             EEEETTTTE-------EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEE-----ECCSSCEEEEE
T ss_pred             EEEECCcCc-------EEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEE-----cCCcccEEEEE
Confidence            999998754       6677889999999999963   57999999999999999999998888     68999999999


Q ss_pred             eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC
Q 016458          214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG  293 (389)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  293 (389)
                      +   +++++++++.||.|++||+++. ..+..+.+|...|.+++|  ++.++++++.||.|++||+++++....+..+..
T Consensus       247 ~---~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  320 (445)
T 2ovr_B          247 Y---DGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS  320 (445)
T ss_dssp             E---CSSCEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS
T ss_pred             E---CCCEEEEEcCCCEEEEEECCCC-cEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc
Confidence            8   4578999999999999999987 788888999999999999  788999999999999999999998887754433


Q ss_pred             CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecc
Q 016458          294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGF  373 (389)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~  373 (389)
                           .+.++.+  +++++++|+.||.|++||+.+++.+..+... ..|...|++++|+  +.+|++|+.||.|++    
T Consensus       321 -----~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~s~~~dg~v~i----  386 (445)
T 2ovr_B          321 -----LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGP-NKHQSAVTCLQFN--KNFVITSSDDGTVKL----  386 (445)
T ss_dssp             -----CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECST-TSCSSCEEEEEEC--SSEEEEEETTSEEEE----
T ss_pred             -----cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccC-CCCCCCEEEEEEC--CCEEEEEeCCCeEEE----
Confidence                 4777776  5679999999999999999999998888421 2488999999996  579999999999999    


Q ss_pred             eecccCccc
Q 016458          374 WRVQEGALS  382 (389)
Q Consensus       374 W~~~~~~~~  382 (389)
                      |++.+++..
T Consensus       387 wd~~~~~~~  395 (445)
T 2ovr_B          387 WDLKTGEFI  395 (445)
T ss_dssp             EETTTCCEE
T ss_pred             EECCCCcee
Confidence            999998764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.6e-41  Score=289.12  Aligned_cols=275  Identities=21%  Similarity=0.323  Sum_probs=223.4

Q ss_pred             cccCCCCCcccCCCc-------ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEE
Q 016458           42 SRSQGRAPVSFGPTD-------LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMT  114 (389)
Q Consensus        42 ~~~~~~~~~~~~~~~-------~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~  114 (389)
                      +.+.+.....|+...       ..+...+.+|...|++++|+|++.+|++|+.|++|++||+.+++.+..+..|...|.+
T Consensus        44 sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~  123 (343)
T 2xzm_R           44 SGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYS  123 (343)
T ss_dssp             EEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEE
T ss_pred             EEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEE
Confidence            445556667776542       3567789999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCC---------cEEEEeeCCCeEEE
Q 016458          115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED---------THLITSSGDQTCVL  185 (389)
Q Consensus       115 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~~l~~~~~dg~i~i  185 (389)
                      ++|+|++++|++++.|+.|++||+....     .........|...|.+++|+|++.         .++++++.||.|++
T Consensus       124 v~~sp~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  198 (343)
T 2xzm_R          124 VAFSPDNRQILSAGAEREIKLWNILGEC-----KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKV  198 (343)
T ss_dssp             EEECSSTTEEEEEETTSCEEEEESSSCE-----EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEE
T ss_pred             EEECCCCCEEEEEcCCCEEEEEeccCCc-----eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEE
Confidence            9999999999999999999999997421     001111237889999999999762         58999999999999


Q ss_pred             EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEE
Q 016458          186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF  265 (389)
Q Consensus       186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  265 (389)
                      ||. .......+     ..|...|.+++|+| ++++|++|+.||.|++||++........+ .+...|.+++|+|++.++
T Consensus       199 wd~-~~~~~~~~-----~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l  270 (343)
T 2xzm_R          199 WNT-NFQIRYTF-----KAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWV  270 (343)
T ss_dssp             EET-TTEEEEEE-----ECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEE
T ss_pred             EcC-CCceeEEE-----cCccccceEEEECC-CCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEE
Confidence            994 45555566     68999999999999 88999999999999999996553444444 356679999999999877


Q ss_pred             EEEecCCeEEEEECCCCceee--EeeccC------CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce
Q 016458          266 GTGSDDGTCRLFDIRTGHQLQ--VYYQQH------GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK  330 (389)
Q Consensus       266 ~~~~~dg~i~i~d~~~~~~~~--~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (389)
                      ++ +.|+.|++||+.+++...  .+....      ...+...+.+++|+|+|++|++|+.||.|++|++.++.
T Consensus       271 a~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          271 AV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             EE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             EE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence            65 568889999998876544  222100      01344569999999999999999999999999987653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.8e-42  Score=295.32  Aligned_cols=309  Identities=13%  Similarity=0.175  Sum_probs=231.4

Q ss_pred             eeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC----eeEEEeeCCCcEEEEEECC--CCcEEEEecCCCcE
Q 016458           60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ----KTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVC  133 (389)
Q Consensus        60 ~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~----~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i  133 (389)
                      .+.+.+|.+.|++++|+|++++|++|+.||.|++||+.++.    ....+..|...|.+++|+|  ++++|++++.||.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            34678999999999999999999999999999999998763    5666788999999999999  69999999999999


Q ss_pred             EEEeCCCCCCCC--CCCcceeeecccccceEEEEEeeC--CCcEEEEeeCCCeEEEEeCCCCeeEEEec--------Ccc
Q 016458          134 SIFNLNSPTDKD--GNLPVSRMLSGHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLRTSVFG--------GEF  201 (389)
Q Consensus       134 ~vw~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~  201 (389)
                      ++||+..+....  ........+..|...|.+++|+|+  + .++++++.||.|++||+.++.....+.        ...
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  162 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP  162 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence            999998754211  112346677889999999999998  6 789999999999999998876433221        011


Q ss_pred             cCCCCCCeeEEEeeCC--CCcEEEEeeCCCceEEEeCCCCCc-ceeEEeeeccceEEEEEecCC----CEEEEEecCCeE
Q 016458          202 QSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDG----NRFGTGSDDGTC  274 (389)
Q Consensus       202 ~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i  274 (389)
                      ...+...+.+++|+|.  ++.++++++.++.+.+|+...... .+..+.+|...|.+++|+|++    ++|++++.||.|
T Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i  242 (351)
T 3f3f_A          163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI  242 (351)
T ss_dssp             CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred             cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence            1367788999999994  388999999999998888776521 266677899999999999998    899999999999


Q ss_pred             EEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE----ecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEE
Q 016458          275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG----YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  350 (389)
Q Consensus       275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  350 (389)
                      ++||++.+...........     .......++....+..+    .....+.+|+....+.+..+    .+|...|++++
T Consensus       243 ~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~  313 (351)
T 3f3f_A          243 RIFKITEKLSPLASEESLT-----NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH----DDHNGEVWSVS  313 (351)
T ss_dssp             EEEEEEECC--------------------------------------------CCSEEEEEEEEE----CTTSSCEEEEE
T ss_pred             EEEeCCCCcCccccCCccc-----ceeccCCCcccccccccccccccceeeeecccccccEEEEE----ecccccEEEEE
Confidence            9999987655443322211     13333344444344333    33445677777777888888    78999999999


Q ss_pred             ECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          351 LSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       351 ~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      |+|++++|++++.||.|++    |++.+++..
T Consensus       314 ~s~~~~~l~s~~~dg~v~i----w~~~~~~~~  341 (351)
T 3f3f_A          314 WNLTGTILSSAGDDGKVRL----WKATYSNEF  341 (351)
T ss_dssp             ECSSSCCEEEEETTSCEEE----EEECTTSCE
T ss_pred             EcCCCCEEEEecCCCcEEE----EecCcCcch
Confidence            9999999999999999999    999987543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.9e-41  Score=311.82  Aligned_cols=306  Identities=12%  Similarity=0.188  Sum_probs=248.6

Q ss_pred             ccCCCCCcccCCCcceeeeecccccC---cEEEEEEcCC-CCeEEEEecCCcEEEEeCCCCCeeEEE-e---eCCCcEEE
Q 016458           43 RSQGRAPVSFGPTDLVCCRTLQGHAG---KVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAI-K---LPCAWVMT  114 (389)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~l~~h~~---~v~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~-~---~~~~~v~~  114 (389)
                      ...+.....|+....++...+.+|.+   .|.+++|+|+ +++|++++.||.|++||+.+++.+..+ .   .|...|.+
T Consensus       179 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~  258 (615)
T 1pgu_A          179 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA  258 (615)
T ss_dssp             EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred             EeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEE
Confidence            34455667888888999999999999   9999999999 999999999999999999999999998 6   88899999


Q ss_pred             EEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccc----ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC
Q 016458          115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH----KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT  190 (389)
Q Consensus       115 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  190 (389)
                      ++|+ ++++|++++.||.|++||+.++.       ....+..+    ...+.++.|. ++ .++++++.||.|++||+.+
T Consensus       259 ~~~~-~~~~l~~~~~d~~i~~wd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~~~~g~i~~~d~~~  328 (615)
T 1pgu_A          259 LSWL-DSQKFATVGADATIRVWDVTTSK-------CVQKWTLDKQQLGNQQVGVVAT-GN-GRIISLSLDGTLNFYELGH  328 (615)
T ss_dssp             EEES-SSSEEEEEETTSEEEEEETTTTE-------EEEEEECCTTCGGGCEEEEEEE-ET-TEEEEEETTSCEEEEETTE
T ss_pred             EEEc-CCCEEEEEcCCCcEEEEECCCCc-------EEEEEcCCCCcccCceeEEEeC-CC-CeEEEEECCCCEEEEECCC
Confidence            9999 99999999999999999998754       44445444    4678888886 44 6899999999999999998


Q ss_pred             CeeEEEecCcccCCCCCC---------------------------------eeEEEeeCCCCcEEEEe------------
Q 016458          191 GLRTSVFGGEFQSGHTAD---------------------------------VLSVSISGSNSRMFVSG------------  225 (389)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~---------------------------------v~~~~~~~~~~~~l~~~------------  225 (389)
                      +.....+     ..|...                                 |.+++|.  .+..++++            
T Consensus       329 ~~~~~~~-----~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~~~~~  401 (615)
T 1pgu_A          329 DEVLKTI-----SGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS--KAQEYSSISWDDTLKVNGIT  401 (615)
T ss_dssp             EEEEEEE-----CCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECC--STTCCEEEETTTEEEETTEE
T ss_pred             CcEEEEE-----eCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEEC--CCcEEEEEeCCCCEEEEEcc
Confidence            7776666     334333                                 3444441  13334444            


Q ss_pred             -------------------------------------------------------------eC-CCceEEEeCCCCCcce
Q 016458          226 -------------------------------------------------------------SC-DSTARLWDTRVASRAV  243 (389)
Q Consensus       226 -------------------------------------------------------------~~-dg~i~i~d~~~~~~~~  243 (389)
                                                                                   +. |+.|++||+... ...
T Consensus       402 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~-~~~  480 (615)
T 1pgu_A          402 KHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL-EVS  480 (615)
T ss_dssp             EEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEE-EEE
T ss_pred             cCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCc-ccc
Confidence                                                                         44 455555554433 111


Q ss_pred             -eEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC----------CCCEE
Q 016458          244 -RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI----------SGRLL  312 (389)
Q Consensus       244 -~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~l  312 (389)
                       ..+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+...    +...|++++|+|          ++++|
T Consensus       481 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----h~~~v~~~~~sp~~~~~~~~~~~~~~l  556 (615)
T 1pgu_A          481 FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF----RTSKINAISWKPAEKGANEEEIEEDLV  556 (615)
T ss_dssp             EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC----CSSCEEEEEECCCC------CCSCCEE
T ss_pred             ccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC----CCCceeEEEEcCccccccccccCCCEE
Confidence             344568889999999999999999999999999999998887765431    334699999999          99999


Q ss_pred             EEEecCCcEEEEEcccc-eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          313 FAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       313 ~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      ++++.||.|++||+.++ +.+..+    .+|...|++++|+|+++ |++++.||.|++    |+++.+
T Consensus       557 ~~~~~dg~i~iw~~~~~~~~~~~~----~~h~~~v~~l~~s~~~~-l~s~~~d~~v~i----w~~~~~  615 (615)
T 1pgu_A          557 ATGSLDTNIFIYSVKRPMKIIKAL----NAHKDGVNNLLWETPST-LVSSGADACIKR----WNVVLE  615 (615)
T ss_dssp             EEEETTSCEEEEESSCTTCCEEET----TSSTTCEEEEEEEETTE-EEEEETTSCEEE----EEEC--
T ss_pred             EEEcCCCcEEEEECCCCceechhh----hcCccceEEEEEcCCCC-eEEecCCceEEE----EeeecC
Confidence            99999999999999987 677777    78999999999999999 999999999999    999763

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-41  Score=320.36  Aligned_cols=192  Identities=10%  Similarity=0.086  Sum_probs=154.9

Q ss_pred             ccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc
Q 016458           43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ  122 (389)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~  122 (389)
                      ...+.....|+.....+...+ .|..+|.+++|+| +++|++++.|++|++||+.+++.+..+. +...|++++|+|+++
T Consensus        35 gs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~  111 (902)
T 2oaj_A           35 ATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLD  111 (902)
T ss_dssp             EETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCS
T ss_pred             EeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCC
Confidence            344556677887777666655 4788999999999 8899999999999999999999988886 557899999999999


Q ss_pred             EEEEecCCCcEEEEeCCCCCCCCCCC---cce-eeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec
Q 016458          123 SVACGGLDSVCSIFNLNSPTDKDGNL---PVS-RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (389)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~---~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  198 (389)
                      +|++|+.||.|++||+..........   ... ....+|.+.|.+++|+|++...+++|+.||.| +||+++++....+.
T Consensus       112 ~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~  190 (902)
T 2oaj_A          112 WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFI  190 (902)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEEC
T ss_pred             EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEe
Confidence            99999999999999998743100000   000 23467899999999999755789999999999 99999998887774


Q ss_pred             Cc-------------ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCC
Q 016458          199 GE-------------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA  239 (389)
Q Consensus       199 ~~-------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  239 (389)
                      ..             ....|...|.+++|+| ++.+|++++.||.|++||++++
T Consensus       191 ~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          191 YELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDANSG  243 (902)
T ss_dssp             CCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEEETTTC
T ss_pred             cccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Confidence            22             0112357799999999 7899999999999999998654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=9.1e-41  Score=282.26  Aligned_cols=256  Identities=25%  Similarity=0.447  Sum_probs=226.6

Q ss_pred             CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC
Q 016458          100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG  179 (389)
Q Consensus       100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  179 (389)
                      .....+.+|...|.+++|+|++++|++++.||.|++|++..+.       ....+.+|...|.+++|+|++ ++|++++.
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~   85 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEKTISGHKLGISDVAWSSDS-NLLVSASD   85 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTS-SEEEEEET
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-------cchhhccCCCceEEEEEcCCC-CEEEEECC
Confidence            4456678899999999999999999999999999999997754       567788999999999999997 78999999


Q ss_pred             CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEe
Q 016458          180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF  259 (389)
Q Consensus       180 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~  259 (389)
                      |+.|++||+.+++....+     ..|...|.+++|+| ++++|++++.|+.|++||+++. +.+..+..|..+|.+++|+
T Consensus        86 d~~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~  158 (312)
T 4ery_A           86 DKTLKIWDVSSGKCLKTL-----KGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAVHFN  158 (312)
T ss_dssp             TSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEEC
T ss_pred             CCEEEEEECCCCcEEEEE-----cCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-EEEEEecCCCCcEEEEEEc
Confidence            999999999999988888     68999999999999 8899999999999999999987 7788889999999999999


Q ss_pred             cCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC
Q 016458          260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ  339 (389)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  339 (389)
                      |++++|++++.||.|++||+++++.+..+....    ...+..++|+|++++|++++.||.|++||+.+++.+..+    
T Consensus       159 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----  230 (312)
T 4ery_A          159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD----NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----  230 (312)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEEEECCSS----CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE----
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCceeeEEeccC----CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE----
Confidence            999999999999999999999988777664332    235899999999999999999999999999999998888    


Q ss_pred             CCCCCCe---eEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          340 NSHEGRI---TCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       340 ~~~~~~v---~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      .+|...+   ......+++.+|++|+.||.|++    ||+.++++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~v----wd~~~~~~~  272 (312)
T 4ery_A          231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI----WNLQTKEIV  272 (312)
T ss_dssp             CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEE----EETTTCCEE
T ss_pred             EecCCceEEEEEEEEeCCCcEEEEECCCCEEEE----EECCCchhh
Confidence            5565543   23333468899999999999999    999988764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6e-41  Score=309.76  Aligned_cols=297  Identities=15%  Similarity=0.238  Sum_probs=252.7

Q ss_pred             CCCcccCCCcc----eeeeecccccCc-EEEEEEcC--CCCeEEEEecCCcEEEEeCCCC--------CeeEEEeeCCCc
Q 016458           47 RAPVSFGPTDL----VCCRTLQGHAGK-VYSLDWTS--ERNRIVSASQDGRLIVWNALTS--------QKTHAIKLPCAW  111 (389)
Q Consensus        47 ~~~~~~~~~~~----~~~~~l~~h~~~-v~~~~~~~--~~~~l~~~~~dg~v~iw~~~~~--------~~~~~~~~~~~~  111 (389)
                      .....|+....    .....+.+|.+. |++++|+|  ++++|++++.||.|++||+.++        .....+..|...
T Consensus        39 ~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~  118 (615)
T 1pgu_A           39 KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP  118 (615)
T ss_dssp             TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSC
T ss_pred             CeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccccc
Confidence            34556777776    788899999999 99999999  9999999999999999999754        667778889999


Q ss_pred             EEEEEECCCCcEEEEecCC----CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458          112 VMTCAFSPTGQSVACGGLD----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (389)
Q Consensus       112 v~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  187 (389)
                      |.+++|+|++++|++++.+    +.|.+||...         ....+.+|...|.+++|+|+++.++++++.|+.|++||
T Consensus       119 v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd  189 (615)
T 1pgu_A          119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN---------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ  189 (615)
T ss_dssp             EEEEEECTTSSEEEEEECCSSCSEEEEETTTCC---------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEE
T ss_pred             EEEEEEeCCCCEEEEeccCCCCccEEEEEECCC---------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEe
Confidence            9999999999999999987    6888888433         56778899999999999999865899999999999999


Q ss_pred             CCCCeeEEEecCcccCCCCC---CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE-e---eeccceEEEEEec
Q 016458          188 ITTGLRTSVFGGEFQSGHTA---DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-H---GHEGDVNTVKFFP  260 (389)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~---~~~~~i~~~~~~~  260 (389)
                      +.+++....+     ..|..   .|.+++|+|.++++|++++.||.|++||+++. +.+..+ .   .|...|.+++|+ 
T Consensus       190 ~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~v~~~~~~-  262 (615)
T 1pgu_A          190 GPPFKFSASD-----RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWL-  262 (615)
T ss_dssp             TTTBEEEEEE-----CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEES-
T ss_pred             CCCcceeeee-----cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-CEeEEecccccccCCceEEEEEc-
Confidence            9999998888     67888   99999999932899999999999999999987 677777 5   899999999999 


Q ss_pred             CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCC
Q 016458          261 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN  340 (389)
Q Consensus       261 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  340 (389)
                      ++.+|++++.||.|++||+++++....+.... ......+.++.|+ +++++++++.||.|++||+.+++.+..+    .
T Consensus       263 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~----~  336 (615)
T 1pgu_A          263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDK-QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTI----S  336 (615)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCT-TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEE----C
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC-CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEE----e
Confidence            99999999999999999999998887776542 1222347888885 8999999999999999999998888887    5


Q ss_pred             CCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          341 SHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       341 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      .|...|++++| |+   |++++.||.|++
T Consensus       337 ~~~~~v~~~~~-~~---l~~~~~dg~i~~  361 (615)
T 1pgu_A          337 GHNKGITALTV-NP---LISGSYDGRIME  361 (615)
T ss_dssp             CCSSCEEEEET-TT---TEEEETTSCEEE
T ss_pred             CCCCCEEEEEe-cC---cEEECCCCeEEE
Confidence            67777777776 55   444444444444

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=9.1e-41  Score=279.80  Aligned_cols=254  Identities=18%  Similarity=0.260  Sum_probs=210.2

Q ss_pred             EEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC-CCcEEEEeeCCC
Q 016458          103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQ  181 (389)
Q Consensus       103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg  181 (389)
                      ..+.+|...|.+++|+|+|++|++|+.|+.|++|++....     ......+.+|.++|.+++|+++ .+.+|++|+.|+
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-----~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~   77 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   77 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-----BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-----cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC
Confidence            3466889999999999999999999999999999997532     1256788999999999999864 237899999999


Q ss_pred             eEEEEeCCCCe--eEEEecCcccCCCCCCeeEEEeeCCC-CcEEEEeeCCCceEEEeCCCCCc-ceeEEeeeccceEEEE
Q 016458          182 TCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVK  257 (389)
Q Consensus       182 ~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~~~  257 (389)
                      +|++||+.++.  ....+     ..|...|.+++|+|.. +.+|++++.|+.|++||++.... ....+.+|...|.+++
T Consensus        78 ~v~iWd~~~~~~~~~~~~-----~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~  152 (297)
T 2pm7_B           78 KVMIWKEENGRWSQIAVH-----AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS  152 (297)
T ss_dssp             EEEEEEBSSSCBCCCEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE
T ss_pred             EEEEEEcCCCceEEEEEe-----ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEe
Confidence            99999998874  34444     5788999999999942 78999999999999999987532 2456788999999999


Q ss_pred             EecC-------------CCEEEEEecCCeEEEEECCCCce----eeEeeccCCCCCCCCeeEEEeCCCC---CEEEEEec
Q 016458          258 FFPD-------------GNRFGTGSDDGTCRLFDIRTGHQ----LQVYYQQHGENEIPHVTSIAFSISG---RLLFAGYS  317 (389)
Q Consensus       258 ~~~~-------------~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~  317 (389)
                      |+|+             +++|++|+.|+.|++||++++..    ...+.     .|...|.+++|+|++   ++|++++.
T Consensus       153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-----~H~~~V~~v~~sp~~~~~~~las~s~  227 (297)
T 2pm7_B          153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-----GHSDWVRDVAWSPTVLLRSYMASVSQ  227 (297)
T ss_dssp             ECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-----CCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred             ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-----CCCCceEEEEECCCCCCceEEEEEEC
Confidence            9996             57999999999999999987662    23332     244469999999985   89999999


Q ss_pred             CCcEEEEEcccce---EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          318 NGDCYVWDTLLAK---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       318 dg~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      |+.|++||+....   ....+.  ...|...|.+++|+|+|++|++++.||.|++    |+..
T Consensus       228 D~~v~iWd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~las~~~D~~v~l----w~~~  284 (297)
T 2pm7_B          228 DRTCIIWTQDNEQGPWKKTLLK--EEKFPDVLWRASWSLSGNVLALSGGDNKVTL----WKEN  284 (297)
T ss_dssp             TSCEEEEEESSTTSCCEEEESS--SSCCSSCEEEEEECSSSCCEEEEETTSCEEE----EEEC
T ss_pred             CCcEEEEEeCCCCCccceeeee--cccCCCcEEEEEECCCCCEEEEEcCCCcEEE----EEEC
Confidence            9999999987642   111221  1467889999999999999999999999999    9986

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.3e-41  Score=287.53  Aligned_cols=255  Identities=18%  Similarity=0.237  Sum_probs=205.3

Q ss_pred             eecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--eeEEEeeCCCcEEEEEECC--CCcEEEEecCCCcEEEE
Q 016458           61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVCSIF  136 (389)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw  136 (389)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|++||+.++.  .+..+.+|...|.+++|++  ++++|++|+.|+.|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            3567999999999999999999999999999999998775  4667889999999999986  48999999999999999


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  215 (389)
                      |+.++.     ......+.+|...|.+++|+|+. ..+|++|+.|+.|++||+..+......  .....|...+.+++|+
T Consensus        87 d~~~~~-----~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~--~~~~~h~~~v~~~~~~  159 (316)
T 3bg1_A           87 REENGT-----WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK--KINNAHTIGCNAVSWA  159 (316)
T ss_dssp             CCSSSC-----CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC--CBTTSSSSCBCCCEEC
T ss_pred             ECCCCc-----ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee--eeeccccCCcceEEEc
Confidence            997632     22456678899999999999983 368999999999999999876432111  1115788899999999


Q ss_pred             CCC----------------CcEEEEeeCCCceEEEeCCCCC--cceeEEeeeccceEEEEEecCC----CEEEEEecCCe
Q 016458          216 GSN----------------SRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPDG----NRFGTGSDDGT  273 (389)
Q Consensus       216 ~~~----------------~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~  273 (389)
                      |..                +.+|++|+.|+.|++||++...  .....+.+|...|.+++|+|++    .+|++++.||.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~  239 (316)
T 3bg1_A          160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR  239 (316)
T ss_dssp             CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred             cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence            842                3689999999999999997542  3456678899999999999986    88999999999


Q ss_pred             EEEEECCCCc----eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          274 CRLFDIRTGH----QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       274 i~i~d~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      |++||+.+..    ....+..     +...|.+++|+|++++|++++.||.|++|+..
T Consensus       240 v~iw~~~~~~~~~~~~~~~~~-----~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          240 VFIWTCDDASSNTWSPKLLHK-----FNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEEECSSTTCCCCBCCEEEE-----CSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEEEEccCccccchhhhhhhc-----CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            9999987631    1122222     23359999999999999999999999999975

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.5e-40  Score=288.17  Aligned_cols=266  Identities=19%  Similarity=0.311  Sum_probs=220.4

Q ss_pred             cccCCCcceeeeecccccC------------------cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc
Q 016458           50 VSFGPTDLVCCRTLQGHAG------------------KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW  111 (389)
Q Consensus        50 ~~~~~~~~~~~~~l~~h~~------------------~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~  111 (389)
                      ..|+.........+.+|..                  .|.+++|+|++++|++|+.|++|++||+.+++.+..+..|...
T Consensus        88 ~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~  167 (393)
T 1erj_A           88 QVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD  167 (393)
T ss_dssp             EEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCC
Confidence            3455555555666665542                  4999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC
Q 016458          112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG  191 (389)
Q Consensus       112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  191 (389)
                      |.+++|+|++++|++++.|+.|++||+.++.       ....+ .+...+.+++|+|..+.++++|+.|+.|++||+.++
T Consensus       168 v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-------~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~  239 (393)
T 1erj_A          168 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-------CSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG  239 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTE-------EEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC
T ss_pred             EEEEEEcCCCCEEEEecCCCcEEEEECCCCe-------eEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence            9999999999999999999999999998744       23333 356789999999944489999999999999999998


Q ss_pred             eeEEEecCcc--cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC-----------cceeEEeeeccceEEEEE
Q 016458          192 LRTSVFGGEF--QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-----------RAVRTFHGHEGDVNTVKF  258 (389)
Q Consensus       192 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~i~~~~~  258 (389)
                      .....+....  ..+|...|.+++|+| ++.+|++++.|+.|++||++...           .....+.+|...|.+++|
T Consensus       240 ~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  318 (393)
T 1erj_A          240 FLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT  318 (393)
T ss_dssp             CEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEE
T ss_pred             cEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEE
Confidence            8776653221  146889999999999 88999999999999999997531           234567789999999999


Q ss_pred             ecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC------CCCEEEEEecCCcEEEEEcccc
Q 016458          259 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI------SGRLLFAGYSNGDCYVWDTLLA  329 (389)
Q Consensus       259 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~  329 (389)
                      +|++.+|++|+.||.|++||+.+++.+..+..+..     .|.+++|++      ++++|++|+.||.|++|++...
T Consensus       319 ~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~-----~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          319 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-----SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             CGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC-----CEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            99999999999999999999999998877765443     599999876      6889999999999999998643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-40  Score=288.51  Aligned_cols=260  Identities=17%  Similarity=0.224  Sum_probs=220.3

Q ss_pred             eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCC--CCCeeEEEeeCCCcEEEEEECCC--CcEEEEecCCCcE
Q 016458           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL--TSQKTHAIKLPCAWVMTCAFSPT--GQSVACGGLDSVC  133 (389)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i  133 (389)
                      .+...+.+|.++|++++|+|++++|++|+.||.|++||+.  +++....+..|...|.+++|+++  +++|++++.||.|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            3556889999999999999999999999999999999998  55677788889999999999987  9999999999999


Q ss_pred             EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC--CCcEEEEeeCCCeEEEEeCCCCee--EEEecCcccCCCCCCe
Q 016458          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLR--TSVFGGEFQSGHTADV  209 (389)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v  209 (389)
                      ++||+..+.     ......+..|...|.+++|+|+  + .++++++.|+.|++||+.++..  ...+     ..|...|
T Consensus        82 ~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~-----~~~~~~v  150 (379)
T 3jrp_A           82 LIWKEENGR-----WSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIII-----DAHAIGV  150 (379)
T ss_dssp             EEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCEEEE-----ECCTTCE
T ss_pred             EEEEcCCCc-----eeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceeeEEe-----cCCCCce
Confidence            999998742     2245667789999999999998  6 7899999999999999998733  2333     5788999


Q ss_pred             eEEEeeCC------------CCcEEEEeeCCCceEEEeCCCCCc---ceeEEeeeccceEEEEEecC---CCEEEEEecC
Q 016458          210 LSVSISGS------------NSRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFFPD---GNRFGTGSDD  271 (389)
Q Consensus       210 ~~~~~~~~------------~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d  271 (389)
                      .+++|+|.            ++.++++++.||.|++||++....   ....+.+|...|.+++|+|+   +.+|++++.|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d  230 (379)
T 3jrp_A          151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD  230 (379)
T ss_dssp             EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred             EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence            99999995            588999999999999999986632   34567789999999999999   8999999999


Q ss_pred             CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458          272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (389)
Q Consensus       272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (389)
                      |.|++||++++.............+...+.+++|+|++++|++++.||.|++|++..
T Consensus       231 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            999999999875333332222233455699999999999999999999999999874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.7e-40  Score=277.67  Aligned_cols=256  Identities=19%  Similarity=0.273  Sum_probs=207.6

Q ss_pred             CCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeee-cc-cccceEEEEEeeCCCcEEE
Q 016458           98 TSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SG-HKGYVSCCQYVPDEDTHLI  175 (389)
Q Consensus        98 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~l~  175 (389)
                      +.+.+..+.+|..+|.+++|+|+  +|++|+.|+.|++|++..+.     ......+ .. |...|.+++|+|++ .+|+
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~-----~~~~~~~~~~~h~~~v~~v~~sp~~-~~la   74 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD-----FTLIDVLDETAHKKAIRSVAWRPHT-SLLA   74 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC-----CEEEEEECTTCCCSCEEEEEECTTS-SEEE
T ss_pred             ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC-----eEEEEEEecCCccCCEEEEEECCCC-CEEE
Confidence            45567788999999999999987  99999999999999997632     1233344 34 99999999999997 7899


Q ss_pred             EeeCCCeEEEEeCCC-------CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC---cceeE
Q 016458          176 TSSGDQTCVLWDITT-------GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---RAVRT  245 (389)
Q Consensus       176 ~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~  245 (389)
                      +++.|+.|++||+..       ......+     .+|...|.+++|+| ++++|++++.|+.|++||++...   +.+..
T Consensus        75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~-----~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~  148 (330)
T 2hes_X           75 AGSFDSTVSIWAKEESADRTFEMDLLAII-----EGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISV  148 (330)
T ss_dssp             EEETTSCEEEEEC-------CCCEEEEEE-----C----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEE
T ss_pred             EEeCCCcEEEEEcccCcCccccceeEEEE-----cCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEE
Confidence            999999999999853       2344555     68999999999999 88999999999999999995432   35667


Q ss_pred             EeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCC--ceeeEeeccCCCCCCCCeeEEEeCCC--CCEEEEEecCCcE
Q 016458          246 FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG--HQLQVYYQQHGENEIPHVTSIAFSIS--GRLLFAGYSNGDC  321 (389)
Q Consensus       246 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i  321 (389)
                      +.+|...|.+++|+|++.+|++++.|+.|++||..++  +.+..+..     +...|.+++|+|+  +.+|++|+.|+.|
T Consensus       149 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~D~~v  223 (330)
T 2hes_X          149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG-----HEGTVWSSDFDKTEGVFRLCSGSDDSTV  223 (330)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC-----CSSCEEEEEECCSSSSCEEEEEETTSCE
T ss_pred             eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC-----CCCcEEEEEecCCCCeeEEEEEeCCCeE
Confidence            8899999999999999999999999999999998766  34444433     3345999999998  6799999999999


Q ss_pred             EEEEcccc--------eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458          322 YVWDTLLA--------KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       322 ~i~d~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~  380 (389)
                      ++||+..+        .....+.   ..|...|.+++|++++ +|++++.||.|++    |+..+++
T Consensus       224 ~iw~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~v~~s~~~-~l~s~~~dg~v~i----w~~~~~~  282 (330)
T 2hes_X          224 RVWKYMGDDEDDQQEWVCEAILP---DVHKRQVYNVAWGFNG-LIASVGADGVLAV----YEEVDGE  282 (330)
T ss_dssp             EEEEEEEECTTSCEEEEEEEECC---SCCSSCEEEEEECTTS-CEEEEETTSCEEE----EEEETTE
T ss_pred             EEEEecCCCccccceeEEeeecc---cccccceEEEEEcCCC-EEEEEeCCCEEEE----EEcCCCc
Confidence            99998764        3333331   3489999999999765 8999999999999    9998773

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-40  Score=314.89  Aligned_cols=212  Identities=12%  Similarity=0.126  Sum_probs=179.3

Q ss_pred             cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCC
Q 016458           63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT  142 (389)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  142 (389)
                      ..+|.+.|++++|+|++++||+|+.||+|+||+..+.+....+ .|..+|.+++|+| +++|++++.|+.|++||+.++.
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~   90 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK   90 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence            4589999999999999999999999999999998877665544 3677899999999 8899999999999999998754


Q ss_pred             CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec-C-----cccCCCCCCeeEEEeeC
Q 016458          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG-G-----EFQSGHTADVLSVSISG  216 (389)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~-----~~~~~~~~~v~~~~~~~  216 (389)
                             ....+. |...|++++|+|++ .++++|+.||.|++||+.++....... .     .....|...|.+++|+|
T Consensus        91 -------~~~~~~-~~~~V~~v~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp  161 (902)
T 2oaj_A           91 -------VLTTVF-VPGKITSIDTDASL-DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP  161 (902)
T ss_dssp             -------EEEEEE-CSSCEEEEECCTTC-SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred             -------EEEEEc-CCCCEEEEEECCCC-CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence                   344443 66899999999998 789999999999999999887641110 0     11257889999999999


Q ss_pred             CCCcEEEEeeCCCceEEEeCCCCCcceeEEeee------------------ccceEEEEEecCCCEEEEEecCCeEEEEE
Q 016458          217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------------------EGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (389)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (389)
                      .+...+++|+.||.| +||++.. +.+..+..|                  ...|.+++|+|+|++|++++.||.|++||
T Consensus       162 ~~~~~l~~g~~dg~v-lWd~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd  239 (902)
T 2oaj_A          162 RDIGTVLISYEYVTL-TYSLVEN-EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD  239 (902)
T ss_dssp             TEEEEEEEECSSCEE-EEETTTT-EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             CCCCEEEEEeCCCcE-EEECCCC-ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence            666899999999999 9999987 666666655                  46799999999999999999999999999


Q ss_pred             CCCCceeeE
Q 016458          279 IRTGHQLQV  287 (389)
Q Consensus       279 ~~~~~~~~~  287 (389)
                      +++++.+..
T Consensus       240 ~~~g~~~~~  248 (902)
T 2oaj_A          240 ANSGHMIMA  248 (902)
T ss_dssp             TTTCCEEEE
T ss_pred             CCCCcEEEE
Confidence            998876653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.1e-39  Score=310.94  Aligned_cols=313  Identities=20%  Similarity=0.258  Sum_probs=263.5

Q ss_pred             CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458           45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV  124 (389)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  124 (389)
                      .+.....|+.........+.+|.++|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|
T Consensus        33 ~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  112 (814)
T 3mkq_A           33 YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYV  112 (814)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEE
T ss_pred             CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEE
Confidence            34566789888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC
Q 016458          125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG  204 (389)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  204 (389)
                      ++++.||.|++|++..+.      .....+.+|...|.+++|+|+++..+++++.||.|++||+.++.....+.    ..
T Consensus       113 ~~~~~dg~i~vw~~~~~~------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~----~~  182 (814)
T 3mkq_A          113 LSGSDDLTVKLWNWENNW------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT----TG  182 (814)
T ss_dssp             EEEETTSEEEEEEGGGTS------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE----CC
T ss_pred             EEEcCCCEEEEEECCCCc------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe----cC
Confidence            999999999999998642      25677788999999999999334799999999999999998887766663    34


Q ss_pred             CCCCeeEEEeeCC-CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458          205 HTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (389)
Q Consensus       205 ~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (389)
                      +...+.+++|+|. ++.++++++.||.|++||+++. ..+..+.+|...|.+++|+|++.+|++++.||.|++||+.+++
T Consensus       183 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~  261 (814)
T 3mkq_A          183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (814)
T ss_dssp             CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS
T ss_pred             CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            4588999999973 5679999999999999999887 7788888999999999999999999999999999999999998


Q ss_pred             eeeEeeccCCCCCCCCeeEEEeCCCCC--EEEEEecCCcEEEEEcccceEEEeec-------------------------
Q 016458          284 QLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDCYVWDTLLAKVVLNLG-------------------------  336 (389)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------------  336 (389)
                      ....+..+..     .+.+++|+|++.  +++++ .++.+.+|++........+.                         
T Consensus       262 ~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  335 (814)
T 3mkq_A          262 VEKTLNVGLE-----RSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRG  335 (814)
T ss_dssp             EEEEECCSSS-----SEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCS
T ss_pred             EEEEeecCCC-----cEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccc
Confidence            8887765443     499999999987  45555 56678889875432211110                         


Q ss_pred             --------------CcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          337 --------------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       337 --------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                                    .....+...+.+++|+|+|++|++++ ||.+.+    |++...
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i----~~~~~~  387 (814)
T 3mkq_A          336 NEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVI----YTALAW  387 (814)
T ss_dssp             CCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEE----EETTTT
T ss_pred             ccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEE----EECccc
Confidence                          00023445688999999999999888 899999    987644

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.1e-40  Score=290.05  Aligned_cols=299  Identities=16%  Similarity=0.200  Sum_probs=242.0

Q ss_pred             cEEEEEEcCCCCeE-EEEecCCcEEEEeCCCC----CeeEEEeeCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCC
Q 016458           69 KVYSLDWTSERNRI-VSASQDGRLIVWNALTS----QKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPT  142 (389)
Q Consensus        69 ~v~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~  142 (389)
                      ....++++|+...+ ++++.||.|+||++...    .....+..|...|.+++|+| ++++|++|+.||.|++|++..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            45568899886544 45788999999998664    33455678999999999999 99999999999999999998754


Q ss_pred             CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (389)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  222 (389)
                      ...........+.+|...|.+++|+|++..+|++++.||.|++||+.+++....+..   ..|...|.+++|+| ++.+|
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~-~~~~l  191 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP---DVHPDTIYSVDWSR-DGALI  191 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT---TTCCSCEEEEEECT-TSSCE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec---CCCCCceEEEEECC-CCCEE
Confidence            222222356778899999999999999767999999999999999999988877621   25888999999999 88899


Q ss_pred             EEeeCCCceEEEeCCCCCcceeEE-eeeccc-eEEEEEecCCCEEEEE---ecCCeEEEEECCCCceeeEeeccCCCCCC
Q 016458          223 VSGSCDSTARLWDTRVASRAVRTF-HGHEGD-VNTVKFFPDGNRFGTG---SDDGTCRLFDIRTGHQLQVYYQQHGENEI  297 (389)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  297 (389)
                      ++++.||.|++||+++. ..+..+ ..|.+. +.+++|+|++.+|++|   +.|+.|++||++++.........   .+.
T Consensus       192 ~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~  267 (402)
T 2aq5_A          192 CTSCRDKRVRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL---DTS  267 (402)
T ss_dssp             EEEETTSEEEEEETTTT-EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC---CCC
T ss_pred             EEEecCCcEEEEeCCCC-ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec---cCC
Confidence            99999999999999987 666676 678776 8999999999999999   79999999999987652222221   122


Q ss_pred             CCeeEEEeCCCCCEEEE-EecCCcEEEEEcccceE-EEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458          298 PHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR  375 (389)
Q Consensus       298 ~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~  375 (389)
                      ..+.+++|+|++++|++ |+.||.|++||+.+++. +..+..  ..|..+|.+++|+|++.++++  .++.+++    |+
T Consensus       268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~--~~~~~~v~~~~~sp~~~~~~s--~~~~~~~----~~  339 (402)
T 2aq5_A          268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM--FSSKESQRGMGYMPKRGLEVN--KCEIARF----YK  339 (402)
T ss_dssp             SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE--ECCSSCCSEEEECCGGGSCGG--GTEEEEE----EE
T ss_pred             CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc--cccCCcccceEEeccccccee--cceeEEE----EE
Confidence            35899999999999875 55799999999998773 333322  236789999999999988765  4679999    99


Q ss_pred             cccCcccC
Q 016458          376 VQEGALSP  383 (389)
Q Consensus       376 ~~~~~~~~  383 (389)
                      +.+++..+
T Consensus       340 l~~~~~~~  347 (402)
T 2aq5_A          340 LHERKCEP  347 (402)
T ss_dssp             EETTEEEE
T ss_pred             cCCCcEEE
Confidence            99987654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.7e-39  Score=282.73  Aligned_cols=269  Identities=14%  Similarity=0.207  Sum_probs=227.0

Q ss_pred             CCcccCCCcceeeeeccc-ccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEE
Q 016458           48 APVSFGPTDLVCCRTLQG-HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC  126 (389)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~-h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  126 (389)
                      ....|+.........+.. |.+.|++++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|  ++.++++
T Consensus       114 ~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~  191 (401)
T 4aez_A          114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSS  191 (401)
T ss_dssp             EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEE
T ss_pred             eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEE
Confidence            344566666666666665 8899999999999999999999999999999999999999999999999999  5679999


Q ss_pred             ecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCC
Q 016458          127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT  206 (389)
Q Consensus       127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  206 (389)
                      ++.||.|++||+....      .....+.+|.+.|.+++|+|++ .+|++++.||.|++||+.++.....+     ..|.
T Consensus       192 ~~~dg~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~-----~~~~  259 (401)
T 4aez_A          192 GSRSGAIHHHDVRIAN------HQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFTK-----TNHN  259 (401)
T ss_dssp             EETTSEEEEEETTSSS------CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEEE-----CCCS
T ss_pred             EcCCCCEEEEecccCc------ceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEEe-----cCCc
Confidence            9999999999998532      2567788899999999999987 78999999999999999999888887     6889


Q ss_pred             CCeeEEEeeCCCCcEEEEee--CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEE--ecCCeEEEEECCCC
Q 016458          207 ADVLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG--SDDGTCRLFDIRTG  282 (389)
Q Consensus       207 ~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~  282 (389)
                      ..|.+++|+|.+..++++++  .|+.|++||+++. ..+..+. +...|.+++|+|++++++++  +.||.|++||+.++
T Consensus       260 ~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~  337 (401)
T 4aez_A          260 AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-ARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS  337 (401)
T ss_dssp             SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-CEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred             ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-CEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence            99999999997778888866  7999999999987 6666664 67789999999999999994  48999999999987


Q ss_pred             ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (389)
                      ........   ..+...|.+++|+|++++|++++.||.|++||+.+++.+...
T Consensus       338 ~~~~~~~~---~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          338 GLTKQVDI---PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             EEEEEEEE---ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             cceeEEEe---cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            65554332   123345999999999999999999999999999998877655

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.1e-40  Score=279.98  Aligned_cols=251  Identities=18%  Similarity=0.251  Sum_probs=202.6

Q ss_pred             EEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC-CCcEEEEeeCCCe
Q 016458          104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQT  182 (389)
Q Consensus       104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~  182 (389)
                      .+.+|...|.+++|+|++++|++|+.|+.|++||+..+.     ......+.+|.+.|.+++|+++ .+.+|++|+.|++
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-----~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~   82 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-----QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK   82 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-----EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-----cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE
Confidence            346789999999999999999999999999999997632     1245678899999999999863 2378999999999


Q ss_pred             EEEEeCCCCe--eEEEecCcccCCCCCCeeEEEeeCCC-CcEEEEeeCCCceEEEeCCCCCc--ceeEEeeeccceEEEE
Q 016458          183 CVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNTVK  257 (389)
Q Consensus       183 i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~  257 (389)
                      |++||++++.  ....+     ..|...|.+++|+|.. +.+|++|+.|+.|++||++....  ....+.+|...+.+++
T Consensus        83 v~iWd~~~~~~~~~~~~-----~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~  157 (316)
T 3bg1_A           83 VIIWREENGTWEKSHEH-----AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS  157 (316)
T ss_dssp             EEEECCSSSCCCEEEEE-----CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred             EEEEECCCCcceEEEEc-----cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence            9999999874  44455     6799999999999942 78999999999999999986522  1344567889999999


Q ss_pred             EecC-----------------CCEEEEEecCCeEEEEECCCCc---eeeEeeccCCCCCCCCeeEEEeCCCC----CEEE
Q 016458          258 FFPD-----------------GNRFGTGSDDGTCRLFDIRTGH---QLQVYYQQHGENEIPHVTSIAFSISG----RLLF  313 (389)
Q Consensus       258 ~~~~-----------------~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~  313 (389)
                      |+|+                 +++|++|+.|+.|++||++...   ....+     ..|...|.+++|+|++    ++|+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l-----~~h~~~V~~v~~sp~~~~~~~~la  232 (316)
T 3bg1_A          158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL-----EAHSDWVRDVAWAPSIGLPTSTIA  232 (316)
T ss_dssp             ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC-----BCCSSCEEEEECCCCSSCSCCEEE
T ss_pred             EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec-----ccCCCceEEEEecCCCCCCCceEE
Confidence            9997                 4789999999999999997553   22322     2344569999999986    7999


Q ss_pred             EEecCCcEEEEEcccce----EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          314 AGYSNGDCYVWDTLLAK----VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       314 ~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      +++.||.|++||+.+..    ....+    ..|...|.+++|+|++++|++++.||.|++    |+..
T Consensus       233 s~s~D~~v~iw~~~~~~~~~~~~~~~----~~~~~~v~~v~~sp~g~~las~~~D~~v~l----w~~~  292 (316)
T 3bg1_A          233 SCSQDGRVFIWTCDDASSNTWSPKLL----HKFNDVVWHVSWSITANILAVSGGDNKVTL----WKES  292 (316)
T ss_dssp             EEETTCEEEEEECSSTTCCCCBCCEE----EECSSCEEEEEECTTTCCEEEEESSSCEEE----EEEC
T ss_pred             EEcCCCeEEEEEccCccccchhhhhh----hcCCCcEEEEEEcCCCCEEEEEcCCCeEEE----EEEC
Confidence            99999999999987631    11223    467889999999999999999999999999    9986

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.3e-39  Score=300.72  Aligned_cols=272  Identities=22%  Similarity=0.379  Sum_probs=225.2

Q ss_pred             ccCCCCCcccCCCc-----ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEE
Q 016458           43 RSQGRAPVSFGPTD-----LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF  117 (389)
Q Consensus        43 ~~~~~~~~~~~~~~-----~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~  117 (389)
                      .+.+.....|+...     ....+.+.+|.+.|.+++|+|++++|++|+.||+|++||+.++.....+..|...|.+++|
T Consensus       401 ~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~  480 (694)
T 3dm0_A          401 ASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF  480 (694)
T ss_dssp             EETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             EeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEE
Confidence            33445556675543     3456789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCC-cEEEEeeCCCeEEEEeCCCCeeEEE
Q 016458          118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITTGLRTSV  196 (389)
Q Consensus       118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~  196 (389)
                      +|++++|++|+.|+.|++||.....    .........+|...|.+++|+|++. ..+++++.|+.|++||+.++.....
T Consensus       481 s~~~~~l~s~s~D~~i~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~  556 (694)
T 3dm0_A          481 SLDNRQIVSASRDRTIKLWNTLGEC----KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST  556 (694)
T ss_dssp             CTTSSCEEEEETTSCEEEECTTSCE----EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             eCCCCEEEEEeCCCEEEEEECCCCc----ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE
Confidence            9999999999999999999986422    0011112257889999999999862 5799999999999999999998888


Q ss_pred             ecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEE
Q 016458          197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL  276 (389)
Q Consensus       197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  276 (389)
                      +     ..|...|.+++|+| ++++|++++.||.|++||+++. +.+..+. +...|.+++|+|++.+|++++ ++.|++
T Consensus       557 ~-----~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~i  627 (694)
T 3dm0_A          557 L-----AGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEG-KKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKI  627 (694)
T ss_dssp             E-----CCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTT-EEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEE
T ss_pred             E-----cCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCC-ceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEE
Confidence            8     78999999999999 8899999999999999999987 5555544 456799999999998777665 567999


Q ss_pred             EECCCCceeeEeeccCCC--------------CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          277 FDIRTGHQLQVYYQQHGE--------------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       277 ~d~~~~~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      ||++++..+..+......              .+...+++++|+|+|++|++|+.||.|++||+.
T Consensus       628 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          628 WDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            999998877666432211              111237899999999999999999999999975

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.7e-39  Score=284.00  Aligned_cols=277  Identities=13%  Similarity=0.121  Sum_probs=232.4

Q ss_pred             ccCCCCCcccCCCcce------eeeecccccCcEEEEEEcCC----C---CeEEEEecCCcEEEEeCCCCCe-----eEE
Q 016458           43 RSQGRAPVSFGPTDLV------CCRTLQGHAGKVYSLDWTSE----R---NRIVSASQDGRLIVWNALTSQK-----THA  104 (389)
Q Consensus        43 ~~~~~~~~~~~~~~~~------~~~~l~~h~~~v~~~~~~~~----~---~~l~~~~~dg~v~iw~~~~~~~-----~~~  104 (389)
                      ...+.....|+.....      ....+.+|..+|++++|+|+    +   ++|++++.||.|++||+.+++.     ...
T Consensus        32 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  111 (397)
T 1sq9_A           32 CSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK  111 (397)
T ss_dssp             EETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE
T ss_pred             EcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccccee
Confidence            3445556677776655      78888999999999999999    9   9999999999999999998887     888


Q ss_pred             EeeC-----CCcEEEEEEC----CCCcE-EEEecCCCcEEEEeCCC------CCCCCCCCcceeee-------cccccce
Q 016458          105 IKLP-----CAWVMTCAFS----PTGQS-VACGGLDSVCSIFNLNS------PTDKDGNLPVSRML-------SGHKGYV  161 (389)
Q Consensus       105 ~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~vw~~~~------~~~~~~~~~~~~~~-------~~~~~~v  161 (389)
                      +..|     ...|.+++|+    |++++ |++++.||.|++||+..      ....  .+.....+       ..|...|
T Consensus       112 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i  189 (397)
T 1sq9_A          112 LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL--NWSPTLELQGTVESPMTPSQFA  189 (397)
T ss_dssp             ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT--CCCCEEEEEEEECCSSSSCCCC
T ss_pred             ecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee--eccCcceeeeeeccccCCCCCc
Confidence            8888     5889999999    99999 99999999999999987      3311  11111244       4588999


Q ss_pred             EEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC---C---CCCeeEEEeeCCCCcEEEEeeCC---CceE
Q 016458          162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG---H---TADVLSVSISGSNSRMFVSGSCD---STAR  232 (389)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~l~~~~~d---g~i~  232 (389)
                      .+++|+|++  ++++++.||.|++||+++++....+     ..   |   ...|.+++|+| ++.+|++++.|   |.|+
T Consensus       190 ~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~  261 (397)
T 1sq9_A          190 TSVDISERG--LIATGFNNGTVQISELSTLRPLYNF-----ESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCIT  261 (397)
T ss_dssp             CEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEE-----ECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEE
T ss_pred             eEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEE-----eccccccccCCccceEEECC-CCCEEEEEecCCCCceEE
Confidence            999999987  8999999999999999999988888     45   7   88999999999 78899999999   9999


Q ss_pred             EEeCCCCCcceeEEee-------------eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEee------cc--
Q 016458          233 LWDTRVASRAVRTFHG-------------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY------QQ--  291 (389)
Q Consensus       233 i~d~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~--  291 (389)
                      +||+++. +.+..+..             |...|.+++|+|++++|++++.||.|++||+++++.+..+.      .+  
T Consensus       262 i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  340 (397)
T 1sq9_A          262 LYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE  340 (397)
T ss_dssp             EEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGG
T ss_pred             EEECCCC-cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchh
Confidence            9999987 77888888             99999999999999999999999999999999998888876      22  


Q ss_pred             ---C-----CCCCCCCeeEEEeCCCC----------CEEEEEecCCcEEEEEcccce
Q 016458          292 ---H-----GENEIPHVTSIAFSISG----------RLLFAGYSNGDCYVWDTLLAK  330 (389)
Q Consensus       292 ---~-----~~~~~~~i~~~~~~~~~----------~~l~~~~~dg~i~i~d~~~~~  330 (389)
                         .     ...+...|.+++|+|++          ++|++++.||.|++||+.+++
T Consensus       341 ~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          341 DILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             GCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             hhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence               0     00114569999999998          799999999999999998763

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-38  Score=276.72  Aligned_cols=262  Identities=18%  Similarity=0.265  Sum_probs=216.8

Q ss_pred             CCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC--CCcEEEE
Q 016458           99 SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD--EDTHLIT  176 (389)
Q Consensus        99 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~  176 (389)
                      |+.+..+.+|...|.+++|+|++++|++|+.||.|++|++....     ......+.+|...|.+++|+++  + .+|++
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s   74 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFG-TILAS   74 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGC-SEEEE
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-----ceeeeEecCCCCcEEEEEeCCCCCC-CEEEE
Confidence            34566788999999999999999999999999999999997422     2356678899999999999876  5 78999


Q ss_pred             eeCCCeEEEEeCCCCe--eEEEecCcccCCCCCCeeEEEeeCCC--CcEEEEeeCCCceEEEeCCCCC-cceeEEeeecc
Q 016458          177 SSGDQTCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEG  251 (389)
Q Consensus       177 ~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~  251 (389)
                      ++.||.|++||+.++.  ....+     ..|...|.+++|+| +  +.+|++++.||.|++||++... .....+..|..
T Consensus        75 ~~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  148 (379)
T 3jrp_A           75 CSYDGKVLIWKEENGRWSQIAVH-----AVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  148 (379)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT
T ss_pred             eccCCEEEEEEcCCCceeEeeee-----cCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC
Confidence            9999999999999987  55555     67899999999999 5  8899999999999999998763 23446678999


Q ss_pred             ceEEEEEec-------------CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC---CCEEEEE
Q 016458          252 DVNTVKFFP-------------DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS---GRLLFAG  315 (389)
Q Consensus       252 ~i~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~  315 (389)
                      .|.+++|+|             ++.+|++++.||.|++||++++.......... ..+...|.+++|+|+   +++|+++
T Consensus       149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~  227 (379)
T 3jrp_A          149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASV  227 (379)
T ss_dssp             CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEE-ecccCcEeEEEECCCCCCCCeEEEE
Confidence            999999999             69999999999999999998776433222111 223446999999999   8999999


Q ss_pred             ecCCcEEEEEcccce---EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          316 YSNGDCYVWDTLLAK---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       316 ~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      +.||.|++||+.++.   ....+.  ...|...|++++|+|++++|++++.||.|++    |++..+
T Consensus       228 ~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i----w~~~~~  288 (379)
T 3jrp_A          228 SQDRTCIIWTQDNEQGPWKKTLLK--EEKFPDVLWRASWSLSGNVLALSGGDNKVTL----WKENLE  288 (379)
T ss_dssp             ETTSCEEEEEESSTTSCCEEEESS--SSCCSSCEEEEEECSSSCCEEEEESSSSEEE----EEEEET
T ss_pred             eCCCEEEEEeCCCCCccceeeeec--cccCCCcEEEEEEcCCCCEEEEecCCCcEEE----EeCCCC
Confidence            999999999998863   122221  1468899999999999999999999999999    999853

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-39  Score=306.56  Aligned_cols=258  Identities=17%  Similarity=0.224  Sum_probs=216.1

Q ss_pred             eeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCC--CCCeeEEEeeCCCcEEEEEECCC--CcEEEEecCCCcEEE
Q 016458           60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL--TSQKTHAIKLPCAWVMTCAFSPT--GQSVACGGLDSVCSI  135 (389)
Q Consensus        60 ~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~v  135 (389)
                      ...+.+|.++|++++|+|++++|++|+.||.|++||+.  ++.....+..|..+|.+++|+|+  +++|++|+.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            35788999999999999999999999999999999998  55677788899999999999988  999999999999999


Q ss_pred             EeCCCCCCCCCCCcceeeecccccceEEEEEeeC--CCcEEEEeeCCCeEEEEeCCCCee--EEEecCcccCCCCCCeeE
Q 016458          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLR--TSVFGGEFQSGHTADVLS  211 (389)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~  211 (389)
                      ||+.++.     ......+.+|...|.+++|+|+  + .++++|+.||.|++||+.++..  ...+     ..|...|.+
T Consensus        82 wd~~~~~-----~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~-----~~~~~~v~~  150 (753)
T 3jro_A           82 WKEENGR-----WSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIII-----DAHAIGVNS  150 (753)
T ss_dssp             EEEETTE-----EEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCCEEE-----ECCSSCEEE
T ss_pred             EECCCCc-----ccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcceeEe-----ecCCCceEE
Confidence            9998742     2245677889999999999998  6 7899999999999999988732  2233     578899999


Q ss_pred             EEeeCC------------CCcEEEEeeCCCceEEEeCCCCC---cceeEEeeeccceEEEEEecC---CCEEEEEecCCe
Q 016458          212 VSISGS------------NSRMFVSGSCDSTARLWDTRVAS---RAVRTFHGHEGDVNTVKFFPD---GNRFGTGSDDGT  273 (389)
Q Consensus       212 ~~~~~~------------~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~  273 (389)
                      ++|+|.            ++.++++|+.||.|++||++...   .....+.+|..+|.+++|+|+   +.+|++++.||.
T Consensus       151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~  230 (753)
T 3jro_A          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT  230 (753)
T ss_dssp             EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred             EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence            999985            47899999999999999998763   344567789999999999999   899999999999


Q ss_pred             EEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458          274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (389)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (389)
                      |++||++++.............+...|++++|+|+|+++++|+.||.|++||+..
T Consensus       231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            9999999875333222222233455699999999999999999999999999874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-38  Score=279.40  Aligned_cols=286  Identities=11%  Similarity=0.072  Sum_probs=231.0

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC---eeEEEeeC-----------------------------------
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIKLP-----------------------------------  108 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~---~~~~~~~~-----------------------------------  108 (389)
                      ..++.+++|+|+|++|+++ .++.|++||+.+++   .+..+..+                                   
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3579999999999966665 57899999999998   55555432                                   


Q ss_pred             -------------------CCcEEEEEECCCCcEE-EEecCCCcEEEEeCC--CCCCCCCCCcceeeec--ccccceEEE
Q 016458          109 -------------------CAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLN--SPTDKDGNLPVSRMLS--GHKGYVSCC  164 (389)
Q Consensus       109 -------------------~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~--~~~~~v~~~  164 (389)
                                         ...|.+++|+|++++| ++++.||.|++|++.  .+.       ....+.  .|...|.++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-------~~~~~~~~~~~~~v~~~  155 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-------VLKLRKRFCFSKRPNAI  155 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-------CEEEEEEEECSSCEEEE
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-------eeeeeecccCCCCceEE
Confidence                               2269999999999996 899999999999998  433       344444  567899999


Q ss_pred             EEeeCCCcEEEEeeCCCeEEEEeCCCCeeEE----EecCcccCCCCCCeeEEEeeCCC---CcEEEEeeCCCceEEEeCC
Q 016458          165 QYVPDEDTHLITSSGDQTCVLWDITTGLRTS----VFGGEFQSGHTADVLSVSISGSN---SRMFVSGSCDSTARLWDTR  237 (389)
Q Consensus       165 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~i~d~~  237 (389)
                      +|+|++ .+|++++.+|.|++|++.++....    .+     ..|...|.+++|+| +   +.+|++++.|+.|++||++
T Consensus       156 ~~sp~~-~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~  228 (450)
T 2vdu_B          156 SIAEDD-TTVIIADKFGDVYSIDINSIPEEKFTQEPI-----LGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYP  228 (450)
T ss_dssp             EECTTS-SEEEEEETTSEEEEEETTSCCCSSCCCCCS-----EECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEES
T ss_pred             EEcCCC-CEEEEEeCCCcEEEEecCCcccccccceee-----ecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECC
Confidence            999997 789999999999999998876543    33     56889999999999 6   8899999999999999999


Q ss_pred             CCCcceeE-EeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC--------------------CCC
Q 016458          238 VASRAVRT-FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--------------------ENE  296 (389)
Q Consensus       238 ~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------------------~~~  296 (389)
                      +. ..+.. +.+|...|.+++|+ ++++|++++.|+.|++||+++++.+..+.....                    ...
T Consensus       229 ~~-~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (450)
T 2vdu_B          229 QC-FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDII  306 (450)
T ss_dssp             CT-TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CB
T ss_pred             CC-ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccc
Confidence            87 55555 56899999999999 999999999999999999999988877753210                    012


Q ss_pred             CCCeeEEEeCCCCCEEEEEe-cCCcEEEEEc--ccc---eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC------C
Q 016458          297 IPHVTSIAFSISGRLLFAGY-SNGDCYVWDT--LLA---KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW------D  364 (389)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~--~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d  364 (389)
                      ...+.+++|+|++++|++++ .++.|++|++  ..+   ..+..+    ..| +.|.+++|+|++.++++++.      +
T Consensus       307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~----~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~  381 (450)
T 2vdu_B          307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQII----TFP-YNVISLSAHNDEFQVTLDNKESSGVQK  381 (450)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEE----ECS-SCEEEEEEETTEEEEEECCTTCCSSCC
T ss_pred             eEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEe----ccC-CceEEEEecCCcEEEEEecccCCCCCC
Confidence            33589999999999999998 8999999999  555   666666    456 78999999996544444443      4


Q ss_pred             CeeEEeecceeccc
Q 016458          365 TNLKVNLGFWRVQE  378 (389)
Q Consensus       365 g~i~i~~~~W~~~~  378 (389)
                      ..|.+    |.+..
T Consensus       382 ~~i~v----~~~~~  391 (450)
T 2vdu_B          382 NFAKF----IEYNL  391 (450)
T ss_dssp             CSEEE----EEEET
T ss_pred             cceEE----EEEEc
Confidence            55788    76653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2.8e-38  Score=271.22  Aligned_cols=292  Identities=11%  Similarity=0.069  Sum_probs=216.4

Q ss_pred             cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE-EEecCCCcEE
Q 016458           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCS  134 (389)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~  134 (389)
                      ...++..+.+|.+.|++++|+|+|++|++|+.++ +++||..+++.......+  .+..+++.++++.+ ++++.|+.|+
T Consensus         8 ~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~   84 (355)
T 3vu4_A            8 TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVH   84 (355)
T ss_dssp             -----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEE
T ss_pred             ccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEE
Confidence            3345556789999999999999999999998775 789999877666554433  47788888888877 5677889999


Q ss_pred             EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEE
Q 016458          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVS  213 (389)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~  213 (389)
                      +||..++.       ....+. +...|.++.++++.   ++++ .++.|++||+.++ +.+..+     ..   +...++
T Consensus        85 iWd~~~~~-------~~~~~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~-----~~---~~~~~~  144 (355)
T 3vu4_A           85 IWDDVKKQ-------DVSRIK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDD-----IR---FGGVCE  144 (355)
T ss_dssp             EEETTTTE-------EEEEEE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCC-----EE---EEEEEE
T ss_pred             EEECCCCc-------EEEEEE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEe-----cc---CCceEE
Confidence            99998754       344444 66789999998753   3333 4789999999987 554444     11   344555


Q ss_pred             eeCCCCcEEEE--eeCCCceEEEeCCCCC--------------cc-eeEEeeeccceEEEEEecCCCEEEEEecCCe-EE
Q 016458          214 ISGSNSRMFVS--GSCDSTARLWDTRVAS--------------RA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CR  275 (389)
Q Consensus       214 ~~~~~~~~l~~--~~~dg~i~i~d~~~~~--------------~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~  275 (389)
                      +++   .++++  |+.||.|++||+++..              .+ +..+.+|...|.+++|+|++++|++++.||+ |+
T Consensus       145 ~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~  221 (355)
T 3vu4_A          145 FSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIR  221 (355)
T ss_dssp             EET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEE
T ss_pred             EEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEE
Confidence            665   45554  6899999999998753              12 6788999999999999999999999999998 99


Q ss_pred             EEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE--EeecC----------------
Q 016458          276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV--LNLGS----------------  337 (389)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~----------------  337 (389)
                      +||+++++.+..+...   .+...|.+++|+|++++|++++.|+.|++||+..+...  ..+..                
T Consensus       222 iwd~~~~~~~~~~~~g---~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (355)
T 3vu4_A          222 VFKTEDGVLVREFRRG---LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF  298 (355)
T ss_dssp             EEETTTCCEEEEEECT---TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred             EEECCCCcEEEEEEcC---CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence            9999999998887631   12235999999999999999999999999999754311  11100                


Q ss_pred             -cCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458          338 -LQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       338 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~  380 (389)
                       ....+......++|++++++|++++.||.+++    |++..+.
T Consensus       299 ~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~----~~~~~~~  338 (355)
T 3vu4_A          299 KLSVDKHVRGCKIAWISESSLVVVWPHTRMIET----FKVVFDD  338 (355)
T ss_dssp             ECCCCTTCCCCEEEESSSSEEEEEETTTTEEEE----EEEEEET
T ss_pred             EeccCCCCCceEEEEeCCCCEEEEEeCCCeEEE----EEEEcCC
Confidence             00122334577999999999999999999999    9988754

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.6e-39  Score=280.99  Aligned_cols=266  Identities=17%  Similarity=0.249  Sum_probs=221.2

Q ss_pred             CCcccCCCcceeeeeccc-----ccCcEEEEEEcCC----CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEEC
Q 016458           48 APVSFGPTDLVCCRTLQG-----HAGKVYSLDWTSE----RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS  118 (389)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~-----h~~~v~~~~~~~~----~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~  118 (389)
                      ....|+.........+..     |.+.|++++|+|+    +++|++|+.||.|++||+.+++.+..+..|...|.+++|+
T Consensus        45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  124 (366)
T 3k26_A           45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH  124 (366)
T ss_dssp             EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEEC
T ss_pred             EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEEC
Confidence            456677665555555554     5578999999998    6699999999999999999999999999999999999999


Q ss_pred             C-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeee---cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE
Q 016458          119 P-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML---SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT  194 (389)
Q Consensus       119 ~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  194 (389)
                      | ++.+|++++.||.|++||+..+.       ....+   ..|...|.+++|+|++ .+|++++.||.|++||+.+++..
T Consensus       125 ~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~  196 (366)
T 3k26_A          125 PRDPNLLLSVSKDHALRLWNIQTDT-------LVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMM  196 (366)
T ss_dssp             SSCTTEEEEEETTSCEEEEETTTTE-------EEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHH
T ss_pred             CCCCCEEEEEeCCCeEEEEEeecCe-------EEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccc
Confidence            9 99999999999999999998754       44444   6899999999999987 78999999999999999886544


Q ss_pred             EEecC-----------------------cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc----------
Q 016458          195 SVFGG-----------------------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR----------  241 (389)
Q Consensus       195 ~~~~~-----------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------  241 (389)
                      ..+..                       .....|...|.+++|+   ++++++++.||.|++||++....          
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~  273 (366)
T 3k26_A          197 NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES  273 (366)
T ss_dssp             HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCC
T ss_pred             cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCc
Confidence            32210                       0012388999999998   46999999999999999987632          


Q ss_pred             ---ceeEEeeeccceEEEEEecC--CCEEEEEecCCeEEEEECCCCceee----EeeccCCCCCCCCeeEEEeCCCCCEE
Q 016458          242 ---AVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQ----VYYQQHGENEIPHVTSIAFSISGRLL  312 (389)
Q Consensus       242 ---~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (389)
                         .+..+..|...|.+++|+|+  +++|++++.||.|++||+.+++...    .+..   ..+...|++++|+|++++|
T Consensus       274 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l  350 (366)
T 3k26_A          274 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH---HKCGAAIRQTSFSRDSSIL  350 (366)
T ss_dssp             CEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECC---TTCCSCEEEEEECTTSSEE
T ss_pred             chheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcc---cccCCceEEEEeCCCCCeE
Confidence               36677889999999999999  9999999999999999999876543    3322   2224469999999999999


Q ss_pred             EEEecCCcEEEEEcc
Q 016458          313 FAGYSNGDCYVWDTL  327 (389)
Q Consensus       313 ~~~~~dg~i~i~d~~  327 (389)
                      ++++.||.|++||+.
T Consensus       351 ~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          351 IAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEETTSEEEEEEC-
T ss_pred             EEEeCCCEEEEEEec
Confidence            999999999999985

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.7e-38  Score=277.16  Aligned_cols=261  Identities=23%  Similarity=0.367  Sum_probs=217.9

Q ss_pred             EEEeeCCCcEEEEEECCC-CcEEEEecCCCcEEEEeCCCCCCC---CCCCcceeeecccccceEEEEEeeCCCcEEEEee
Q 016458          103 HAIKLPCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDK---DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS  178 (389)
Q Consensus       103 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  178 (389)
                      .....|.+.|++++|+|+ +.+|++++.+|.|++|++......   .........+.+|...|.+++|+|++..+|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            344568889999999997 789999999999999999762111   1123456777899999999999999855999999


Q ss_pred             CCCeEEEEeCCCCee-------EEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC--cceeEEeee
Q 016458          179 GDQTCVLWDITTGLR-------TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGH  249 (389)
Q Consensus       179 ~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~  249 (389)
                      .||.|++||+..+..       ...+     ..|...|.+++|+|.++.+|++++.||.|++||++...  ..+..+..|
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  276 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIF-----TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH  276 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEE-----CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred             CCCeEEEEeCCCCCCCCceeccceee-----cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence            999999999987422       2233     57889999999999788999999999999999999763  567778899


Q ss_pred             ccceEEEEEecCCC-EEEEEecCCeEEEEECCCC-ceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEc
Q 016458          250 EGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDT  326 (389)
Q Consensus       250 ~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~  326 (389)
                      ...|++++|+|++. +|++|+.||.|++||++.. ..+..+..+.     ..|.+++|+|+++ +|++++.||.|++||+
T Consensus       277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~-----~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~  351 (430)
T 2xyi_A          277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK-----DEIFQVQWSPHNETILASSGTDRRLHVWDL  351 (430)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCS-----SCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred             CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCC-----CCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence            99999999999887 6889999999999999984 4555554433     3599999999985 7999999999999999


Q ss_pred             cc--------------ceEEEeecCcCCCCCCCeeEEEECCCCC-eEEeeeCCCeeEEeecceecccCcc
Q 016458          327 LL--------------AKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGSWDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       327 ~~--------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~~~~W~~~~~~~  381 (389)
                      ..              ...+..+    .+|...|++++|+|++. +|++++.||.|+|    |++.++.+
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~i----w~~~~~~~  413 (430)
T 2xyi_A          352 SKIGEEQSTEDAEDGPPELLFIH----GGHTAKISDFSWNPNEPWIICSVSEDNIMQV----WQMAENVY  413 (430)
T ss_dssp             GGTTCCCCHHHHHHCCTTEEEEC----CCCSSCEEEEEECSSSTTEEEEEETTSEEEE----EEECHHHH
T ss_pred             CCCccccCccccccCCcceEEEc----CCCCCCceEEEECCCCCCEEEEEECCCCEEE----eEcccccc
Confidence            87              2455555    78999999999999999 8999999999999    99987644

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.5e-37  Score=264.48  Aligned_cols=274  Identities=23%  Similarity=0.380  Sum_probs=231.5

Q ss_pred             cccCCCCCcccCCCc-----ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEE
Q 016458           42 SRSQGRAPVSFGPTD-----LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA  116 (389)
Q Consensus        42 ~~~~~~~~~~~~~~~-----~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~  116 (389)
                      +.+.+.....|+...     ..+.+.+.+|.+.|.+++|+|++++|++++.|+.|++|+............+...+..+.
T Consensus        56 S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~  135 (340)
T 4aow_A           56 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA  135 (340)
T ss_dssp             EEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEE
Confidence            345566677776543     356778999999999999999999999999999999999999999888888889999999


Q ss_pred             ECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCC-cEEEEeeCCCeEEEEeCCCCeeEE
Q 016458          117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITTGLRTS  195 (389)
Q Consensus       117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~  195 (389)
                      +++++.+|++++.|+.+++||.....      .......+|...+.+++|++++. .++++++.|+.|++||+.++....
T Consensus       136 ~~~~~~~l~s~s~d~~~~~~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~  209 (340)
T 4aow_A          136 FSSDNRQIVSGSRDKTIKLWNTLGVC------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT  209 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEECTTSCE------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EeecCccceeecCCCeEEEEEeCCCc------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee
Confidence            99999999999999999999987532      23455678899999999998753 467899999999999999999988


Q ss_pred             EecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEE
Q 016458          196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR  275 (389)
Q Consensus       196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  275 (389)
                      .+     ..|...|.+++|+| ++++|++|+.||.|++||+++. ..+..+. +...+.+++|+|++. +++++.|+.|+
T Consensus       210 ~~-----~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~d~~i~  280 (340)
T 4aow_A          210 NH-----IGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEG-KHLYTLD-GGDIINALCFSPNRY-WLCAATGPSIK  280 (340)
T ss_dssp             EE-----CCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTT-EEEEEEE-CSSCEEEEEECSSSS-EEEEEETTEEE
T ss_pred             Ee-----cCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccC-ceeeeec-CCceEEeeecCCCCc-eeeccCCCEEE
Confidence            88     78999999999999 8899999999999999999987 6666665 456899999999875 55667799999


Q ss_pred             EEECCCCceeeEeeccC----CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce
Q 016458          276 LFDIRTGHQLQVYYQQH----GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK  330 (389)
Q Consensus       276 i~d~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (389)
                      +||++.+.....+....    ...+...|++++|+|+|++|++|+.||.|+|||+.+|.
T Consensus       281 iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          281 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            99999887766654321    12345579999999999999999999999999999875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1e-37  Score=274.41  Aligned_cols=265  Identities=15%  Similarity=0.258  Sum_probs=223.8

Q ss_pred             cccCCCcceeeeec--ccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEe
Q 016458           50 VSFGPTDLVCCRTL--QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG  127 (389)
Q Consensus        50 ~~~~~~~~~~~~~l--~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  127 (389)
                      ..|+.....+.+.+  .+|.+.|++|+|+|+|++||+|+.||+|++||+.+++.+..+..|...+.++.+  ++..|++|
T Consensus       128 ~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sg  205 (420)
T 4gga_A          128 YLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSG  205 (420)
T ss_dssp             EEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEE
T ss_pred             EEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEE
Confidence            45666666665544  578889999999999999999999999999999999999999999999999887  46799999


Q ss_pred             cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee----EEEecCcccC
Q 016458          128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR----TSVFGGEFQS  203 (389)
Q Consensus       128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~  203 (389)
                      +.|+.+++|+.....      .....+.+|...+..+.++|++ .++++++.|+.+++|+..++..    ....     .
T Consensus       206 s~d~~i~~~d~~~~~------~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~-----~  273 (420)
T 4gga_A          206 SRSGHIHHHDVRVAE------HHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTF-----T  273 (420)
T ss_dssp             ETTSEEEEEETTSSS------CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEE-----C
T ss_pred             eCCCceeEeeecccc------eeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeee-----c
Confidence            999999999987633      2567788999999999999997 7899999999999999987653    2333     5


Q ss_pred             CCCCCeeEEEeeCCCCcEEEEe--eCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe--cCCeEEEEEC
Q 016458          204 GHTADVLSVSISGSNSRMFVSG--SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDI  279 (389)
Q Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~  279 (389)
                      .|...|.+++|+|.+..+++++  +.|+.|++||++++ .....+. +...+.++.|+|+++.+++++  .||.|++||+
T Consensus       274 ~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~  351 (420)
T 4gga_A          274 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKY  351 (420)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred             ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-ccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEEC
Confidence            7889999999999888888764  57999999999987 6666665 446789999999999988765  7899999999


Q ss_pred             CCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458          280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (389)
                      .+++.+..+..+.     ..|++++|+|+|++|++|+.||.|+|||+....+....
T Consensus       352 ~~~~~v~~l~gH~-----~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~  402 (420)
T 4gga_A          352 PTMAKVAELKGHT-----SRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRR  402 (420)
T ss_dssp             TTCCEEEEECCCS-----SCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---
T ss_pred             CCCcEEEEEcCCC-----CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchh
Confidence            9999988886543     35999999999999999999999999999776555444

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-37  Score=267.86  Aligned_cols=275  Identities=16%  Similarity=0.189  Sum_probs=238.2

Q ss_pred             ccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc
Q 016458           43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ  122 (389)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~  122 (389)
                      ...+.....|+.........+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+. +...+.+++|+|+++
T Consensus        50 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~  128 (369)
T 3zwl_B           50 CSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGN  128 (369)
T ss_dssp             EESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSS
T ss_pred             EeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCC
Confidence            3445667788888889999999999999999999999999999999999999999999998888 778899999999999


Q ss_pred             EEEEecCC-----CcEEEEeCCCCCCCCC----CCcceeeeccccc--ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC-
Q 016458          123 SVACGGLD-----SVCSIFNLNSPTDKDG----NLPVSRMLSGHKG--YVSCCQYVPDEDTHLITSSGDQTCVLWDITT-  190 (389)
Q Consensus       123 ~l~~~~~d-----g~i~vw~~~~~~~~~~----~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-  190 (389)
                      ++++++.+     |.|++|++........    .......+..|..  .+.+++|+|++ .++++++.||.|++||+.+ 
T Consensus       129 ~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~  207 (369)
T 3zwl_B          129 YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNN  207 (369)
T ss_dssp             EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTT
T ss_pred             EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCC
Confidence            99999998     9999999987542110    0112334455655  89999999997 6899999999999999998 


Q ss_pred             CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec
Q 016458          191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD  270 (389)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  270 (389)
                      ......+     ..|...|.+++|+| ++.+|++++.||.|++||+++. ..+..+. +...+.+++|+|+++++++++.
T Consensus       208 ~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~  279 (369)
T 3zwl_B          208 YEYVDSI-----DLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTL-QVLKKYE-TDCPLNTAVITPLKEFIILGGG  279 (369)
T ss_dssp             TEEEEEE-----ECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC-CEEEEEE-CSSCEEEEEECSSSSEEEEEEC
T ss_pred             cEeEEEE-----ecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCC-ceeeeec-CCCCceeEEecCCCceEEEeec
Confidence            6777777     67899999999999 8899999999999999999987 6666665 7888999999999999999999


Q ss_pred             CC--------------eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE
Q 016458          271 DG--------------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  332 (389)
Q Consensus       271 dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  332 (389)
                      ++              .+++||+.+++....+..+..     .|++++|+|++++|++++.||.|++|++..+...
T Consensus       280 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  350 (369)
T 3zwl_B          280 QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG-----PLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD  350 (369)
T ss_dssp             CC-------------CEEEEEETTTCCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred             CCCceEEEEecCCCcceeEEEecCCCcchhheecccC-----cEEEEEECCCCCEEEEEcCCCeEEEEECccccch
Confidence            88              899999999998888765443     4999999999999999999999999999876543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.8e-38  Score=279.89  Aligned_cols=260  Identities=15%  Similarity=0.276  Sum_probs=220.4

Q ss_pred             eeecccccCcEEEEEEcCC-CCeEEEEecCCcEEEEeCCC----------CCeeEEEeeCCCcEEEEEECCCCc-EEEEe
Q 016458           60 CRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALT----------SQKTHAIKLPCAWVMTCAFSPTGQ-SVACG  127 (389)
Q Consensus        60 ~~~l~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iw~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~  127 (389)
                      ...+.+|.+.|++++|+|+ +.+|++++.||.|++|++.+          ......+..|...|.+++|+|++. +|++|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            3456789999999999997 67999999999999999986          677888899999999999999988 99999


Q ss_pred             cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC---eeEEEecCcccCC
Q 016458          128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG---LRTSVFGGEFQSG  204 (389)
Q Consensus       128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~  204 (389)
                      +.||.|++|++...............+.+|...|.+++|+|++..+|++++.||.|++||++++   .....+     ..
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~-----~~  275 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV-----DA  275 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE-----EC
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe-----ec
Confidence            9999999999987432211122245667899999999999976689999999999999999987   455555     57


Q ss_pred             CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCC-EEEEEecCCeEEEEECCCC-
Q 016458          205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTG-  282 (389)
Q Consensus       205 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-  282 (389)
                      |...|.+++|+|....++++|+.||.|++||++....++..+..|...|.+++|+|++. +|++++.||.|++||+... 
T Consensus       276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~  355 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  355 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred             CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            88999999999966668999999999999999986678889999999999999999885 6899999999999999873 


Q ss_pred             -------------ceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccc
Q 016458          283 -------------HQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLA  329 (389)
Q Consensus       283 -------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~  329 (389)
                                   ..+..+     ..+...|++++|+|+++ +|++++.||.|++|++...
T Consensus       356 ~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          356 EEQSTEDAEDGPPELLFIH-----GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CCCCHHHHHHCCTTEEEEC-----CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             cccCccccccCCcceEEEc-----CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                         222222     22344699999999999 9999999999999998653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.3e-38  Score=271.61  Aligned_cols=275  Identities=19%  Similarity=0.191  Sum_probs=227.2

Q ss_pred             CCCCCcccCCCcce--eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEE--eeCCCcEEEEEECCC
Q 016458           45 QGRAPVSFGPTDLV--CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI--KLPCAWVMTCAFSPT  120 (389)
Q Consensus        45 ~~~~~~~~~~~~~~--~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~  120 (389)
                      .+.....|+.....  ....+.+|.+.|++++|+|++++|++++.||.|++||+.+++.....  ..|...|.+++|+|+
T Consensus        28 ~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  107 (372)
T 1k8k_C           28 NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN  107 (372)
T ss_dssp             SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred             CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC
Confidence            44556677776665  88899999999999999999999999999999999999888755444  557889999999999


Q ss_pred             CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC-----------
Q 016458          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-----------  189 (389)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-----------  189 (389)
                      +++|++++.||.|++|++.....   ..........|...|.+++|+|++ .++++++.||.|++||+.           
T Consensus       108 ~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  183 (372)
T 1k8k_C          108 EKKFAVGSGSRVISICYFEQEND---WWVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPT  183 (372)
T ss_dssp             SSEEEEEETTSSEEEEEEETTTT---EEEEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCB
T ss_pred             CCEEEEEeCCCEEEEEEecCCCc---ceeeeeeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEccccccccccccc
Confidence            99999999999999999987431   111233346789999999999987 789999999999999954           


Q ss_pred             -------CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC
Q 016458          190 -------TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG  262 (389)
Q Consensus       190 -------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (389)
                             .+.....+     ..|...+.+++|+| ++++|++++.||.|++||+++. +.+..+..|..+|.+++|+|++
T Consensus       184 ~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~  256 (372)
T 1k8k_C          184 PWGSKMPFGELMFES-----SSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKK-MAVATLASETLPLLAVTFITES  256 (372)
T ss_dssp             TTBSCCCTTCEEEEC-----CCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGT-TEEEEEECSSCCEEEEEEEETT
T ss_pred             ccccccchhhheEec-----CCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCCC-ceeEEEccCCCCeEEEEEecCC
Confidence                   56777776     67889999999999 8889999999999999999987 7888889999999999999999


Q ss_pred             CEEEEEecCCeEEEEECCC--Cceee--Ee--------------------------e------ccCCCCCCCCeeEEEeC
Q 016458          263 NRFGTGSDDGTCRLFDIRT--GHQLQ--VY--------------------------Y------QQHGENEIPHVTSIAFS  306 (389)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~--~~~~~--~~--------------------------~------~~~~~~~~~~i~~~~~~  306 (389)
                      .+|+++ .|+.|++|+++.  +....  .+                          .      ......|...|++++|.
T Consensus       257 ~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  335 (372)
T 1k8k_C          257 SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVL  335 (372)
T ss_dssp             EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEE
T ss_pred             CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEe
Confidence            988877 899999999987  42100  00                          0      11112456679999866


Q ss_pred             -CCC---CEEEEEecCCcEEEEEcccceE
Q 016458          307 -ISG---RLLFAGYSNGDCYVWDTLLAKV  331 (389)
Q Consensus       307 -~~~---~~l~~~~~dg~i~i~d~~~~~~  331 (389)
                       ++|   ++|++|+.||.|++||+.+++.
T Consensus       336 ~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          336 SGGKAKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             ESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             cCCCcceeeEEEecCCCceEEEEecChhH
Confidence             677   9999999999999999987553

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-39  Score=284.66  Aligned_cols=288  Identities=14%  Similarity=0.187  Sum_probs=228.1

Q ss_pred             EEcCCCCeEEEEecCCcEEEEeCCCCCeeEEE-eeCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcce
Q 016458           74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAI-KLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS  151 (389)
Q Consensus        74 ~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  151 (389)
                      .|+|++..+++++      .|+ .+++.+..+ ..|.+.|++++|+| ++++|++|+.||.|++||+....... .....
T Consensus        34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~  105 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSS  105 (437)
T ss_dssp             GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCS
T ss_pred             hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-cccee
Confidence            3778888777765      387 567888888 78889999999999 99999999999999999987621110 11112


Q ss_pred             eeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC---CCeeEEEecCc------c-cCCCCCCeeEEE--eeCCCC
Q 016458          152 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT---TGLRTSVFGGE------F-QSGHTADVLSVS--ISGSNS  219 (389)
Q Consensus       152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~------~-~~~~~~~v~~~~--~~~~~~  219 (389)
                      .. ..|...|.+++|+|++ .+|++++.||.|++||+.   ++.........      . ...+...+.++.  +++ ++
T Consensus       106 ~~-~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~  182 (437)
T 3gre_A          106 LT-YDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EK  182 (437)
T ss_dssp             EE-EECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SC
T ss_pred             ee-ccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CC
Confidence            22 2589999999999987 789999999999999995   44443332110      0 001455677776  445 78


Q ss_pred             cEEEEeeCCCceEEEeCCCCCcceeEEee--eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCC
Q 016458          220 RMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI  297 (389)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  297 (389)
                      .+|++++.||.|++||+++. +.+..+..  |...|.+++|+|++++|++|+.||.|++||+++++.+..+...+.    
T Consensus       183 ~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----  257 (437)
T 3gre_A          183 SLLVALTNLSRVIIFDIRTL-ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH----  257 (437)
T ss_dssp             EEEEEEETTSEEEEEETTTC-CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC----
T ss_pred             CEEEEEeCCCeEEEEeCCCC-eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC----
Confidence            89999999999999999987 77888887  889999999999999999999999999999999888777653222    


Q ss_pred             CCeeEEEe----CCCCCEEEEEecCCcEEEEEcccceEEEeecCcC--------------------C--CCCCCeeEEEE
Q 016458          298 PHVTSIAF----SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--------------------N--SHEGRITCLGL  351 (389)
Q Consensus       298 ~~i~~~~~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------------------~--~~~~~v~~~~~  351 (389)
                      .+|.+++|    +|++.+|++|+.||.|++||+.+++.+..+....                    .  .|...|++++|
T Consensus       258 ~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~  337 (437)
T 3gre_A          258 APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV  337 (437)
T ss_dssp             EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE
T ss_pred             CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE
Confidence            25999955    4568899999999999999999998877764210                    1  27778999999


Q ss_pred             CCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          352 SADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       352 ~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      + ++++|++|+.||.|++    ||+.+++..
T Consensus       338 ~-~~~~l~s~~~d~~i~~----wd~~~~~~~  363 (437)
T 3gre_A          338 S-NDKILLTDEATSSIVM----FSLNELSSS  363 (437)
T ss_dssp             E-TTEEEEEEGGGTEEEE----EETTCGGGC
T ss_pred             C-CceEEEecCCCCeEEE----EECCCcccc
Confidence            9 7789999999999999    999998754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-37  Score=258.20  Aligned_cols=267  Identities=19%  Similarity=0.244  Sum_probs=228.9

Q ss_pred             cccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC---CeeEEEeeCCCcEEEEEEC
Q 016458           42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS---QKTHAIKLPCAWVMTCAFS  118 (389)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~---~~~~~~~~~~~~v~~~~~~  118 (389)
                      ....+.....|+.........+..|.+.|.+++|+|++++|++++.||.|++|++...   +....+..|...|.+++| 
T Consensus        34 s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-  112 (313)
T 3odt_A           34 SVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF-  112 (313)
T ss_dssp             EEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE-
T ss_pred             EEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe-
Confidence            3445666778888888899999999999999999999999999999999999998664   557778889999999999 


Q ss_pred             CCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec
Q 016458          119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (389)
Q Consensus       119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  198 (389)
                       +++++++++.||.|++||...         ....+..|...+.++.|.|..+.++++++.||.|++||  .......+.
T Consensus       113 -~~~~l~~~~~d~~i~~~d~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~  180 (313)
T 3odt_A          113 -QDGVVISGSWDKTAKVWKEGS---------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFS  180 (313)
T ss_dssp             -ETTEEEEEETTSEEEEEETTE---------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEEC
T ss_pred             -cCCEEEEEeCCCCEEEEcCCc---------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEe
Confidence             678999999999999999322         56777889999999999994457999999999999999  445555552


Q ss_pred             CcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEE
Q 016458          199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (389)
Q Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (389)
                          ..+...+.+++|+| ++. +++++.||.|++||+++. +.+..+..|...|.+++|+|++ .|++++.||.|++||
T Consensus       181 ----~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd  252 (313)
T 3odt_A          181 ----GIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTG-DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWS  252 (313)
T ss_dssp             ----SSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEEC
T ss_pred             ----ccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCch-hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEE
Confidence                23889999999998 665 889999999999999987 7888899999999999999999 699999999999999


Q ss_pred             CCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (389)
                      +++++....+..+..     .+.+++|+|+++ +++++.||.|++||+.+++.....
T Consensus       253 ~~~~~~~~~~~~~~~-----~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          253 KENGSLKQVITLPAI-----SIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             TTTCCEEEEEECSSS-----CEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred             CCCCceeEEEeccCc-----eEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence            999998888766543     499999999998 567889999999999987765543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.7e-39  Score=278.68  Aligned_cols=251  Identities=12%  Similarity=0.161  Sum_probs=201.1

Q ss_pred             EEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeE
Q 016458          104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC  183 (389)
Q Consensus       104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  183 (389)
                      ....+.++|.+++|+|++++|++|+.|+.|++|++.++.     ......+.+|...|.+++|+|++ .+|++++.|+.|
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v   79 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-----WKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNA   79 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-----EEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSE
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-----eEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeE
Confidence            345567789999999999999999999999999998641     12556678899999999999997 789999999999


Q ss_pred             EEEeCCCCe---eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc--ceeEEee-eccceEEEE
Q 016458          184 VLWDITTGL---RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHG-HEGDVNTVK  257 (389)
Q Consensus       184 ~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~-~~~~i~~~~  257 (389)
                      ++||+.++.   ....+     ..|...|.+++|+| ++++|++++.|+.|++||++....  ....+.. |...|.+++
T Consensus        80 ~vwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~  153 (377)
T 3dwl_C           80 YVYEKRPDGTWKQTLVL-----LRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD  153 (377)
T ss_dssp             EEC------CCCCEEEC-----CCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred             EEEEcCCCCceeeeeEe-----cccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence            999999877   44444     67899999999999 888999999999999999997632  4667777 999999999


Q ss_pred             EecCCCEEEEEecCCeEEEEECCCCce--------------eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEE
Q 016458          258 FFPDGNRFGTGSDDGTCRLFDIRTGHQ--------------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV  323 (389)
Q Consensus       258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (389)
                      |+|++++|++++.||.|++||++....              ........  .+...|.+++|+|++++|++++.||.|++
T Consensus       154 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~i  231 (377)
T 3dwl_C          154 WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTI  231 (377)
T ss_dssp             ECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred             EcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence            999999999999999999999863221              11111111  34456999999999999999999999999


Q ss_pred             EEcccceE----EEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          324 WDTLLAKV----VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       324 ~d~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      ||+.+++.    +..+    ..|...|.+++|+|++++|++++.|+.+ +    |+..
T Consensus       232 wd~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~----~~~~  280 (377)
T 3dwl_C          232 AYPSAPEQPPRALITV----KLSQLPLRSLLWANESAIVAAGYNYSPI-L----LQGN  280 (377)
T ss_dssp             CEECSTTSCEEECCCE----ECSSSCEEEEEEEETTEEEEEESSSSEE-E----ECCC
T ss_pred             EECCCCCCcceeeEee----cCCCCceEEEEEcCCCCEEEEEcCCcEE-E----EEeC
Confidence            99998876    5555    7899999999999999999998877766 5    5554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=267.90  Aligned_cols=267  Identities=13%  Similarity=0.114  Sum_probs=215.4

Q ss_pred             CCCCcccCCCcceeeee-cccccCcEEEEEEcCC---CCeEEEEecCCcEEEEeCCCCC-eeEEEeeCCCcEEEEE----
Q 016458           46 GRAPVSFGPTDLVCCRT-LQGHAGKVYSLDWTSE---RNRIVSASQDGRLIVWNALTSQ-KTHAIKLPCAWVMTCA----  116 (389)
Q Consensus        46 ~~~~~~~~~~~~~~~~~-l~~h~~~v~~~~~~~~---~~~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~~~v~~~~----  116 (389)
                      +.....|+......... ..+|.++|++++|+|+   +++|++|+.||.|++||+.+++ .+..+..|...|.+++    
T Consensus        43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  122 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGG  122 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESG
T ss_pred             CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccc
Confidence            44556676665544333 3379999999999998   6999999999999999999988 8888999999999995    


Q ss_pred             --ECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccc----cceEEEE----EeeCCCcEEEEeeCCCeEEEE
Q 016458          117 --FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK----GYVSCCQ----YVPDEDTHLITSSGDQTCVLW  186 (389)
Q Consensus       117 --~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~----~~~~~~~~l~~~~~dg~i~iw  186 (389)
                        |+|++++|++++.||.|++||+..+..      ....+..|.    ..+.++.    |+|++ .++++++.||.|++|
T Consensus       123 ~~~s~~~~~l~~~~~d~~i~vwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~  195 (357)
T 3i2n_A          123 LGIGEGAPEIVTGSRDGTVKVWDPRQKDD------PVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLF  195 (357)
T ss_dssp             GGCC-CCCEEEEEETTSCEEEECTTSCSS------CSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEE
T ss_pred             cccCCCccEEEEEeCCCeEEEEeCCCCCC------cceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEE
Confidence              578999999999999999999987431      233444443    3788888    66776 789999999999999


Q ss_pred             eCCCCeeEEEecCcccCCCCCCeeEEEeeCC--CCcEEEEeeCCCceEEEeCCCCCcceeEEe-----eeccceEEEEEe
Q 016458          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASRAVRTFH-----GHEGDVNTVKFF  259 (389)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~i~~~~~~  259 (389)
                      |++++......      .+...|.+++|+|.  ++.++++++.||.|++||++.. .....+.     +|...|.+++|+
T Consensus       196 d~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~  268 (357)
T 3i2n_A          196 DLRNMALRWET------NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ-HPTKGFASVSEKAHKSTVWQVRHL  268 (357)
T ss_dssp             ETTTTEEEEEE------ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE-ETTTEEEEEEEECCSSCEEEEEEE
T ss_pred             ECccCceeeec------CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC-CcccceeeeccCCCcCCEEEEEEC
Confidence            99999875553      67889999999984  5778999999999999999876 4444443     899999999999


Q ss_pred             cCCC-EEEEEecCCeEEEEECCCCcee-------------------eEeeccCCCCCCCCeeEEEeCCCCCEEE-EEecC
Q 016458          260 PDGN-RFGTGSDDGTCRLFDIRTGHQL-------------------QVYYQQHGENEIPHVTSIAFSISGRLLF-AGYSN  318 (389)
Q Consensus       260 ~~~~-~l~~~~~dg~i~i~d~~~~~~~-------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d  318 (389)
                      |++. +|++++.||.|++||++.+...                   ..+..     +...|++++|+|++++|+ +++.|
T Consensus       269 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~s~~~d  343 (357)
T 3i2n_A          269 PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL-----STQPISSLDWSPDKRGLCVCSSFD  343 (357)
T ss_dssp             TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC-----CSSCEEEEEECSSSTTEEEEEETT
T ss_pred             CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc-----CCCCeeEEEEcCCCCeEEEEecCC
Confidence            9998 8999999999999999865432                   22222     344699999999999888 79999


Q ss_pred             CcEEEEEcccceE
Q 016458          319 GDCYVWDTLLAKV  331 (389)
Q Consensus       319 g~i~i~d~~~~~~  331 (389)
                      |.|++||+.+.+.
T Consensus       344 ~~i~iw~~~~~~~  356 (357)
T 3i2n_A          344 QTVRVLIVTKLNK  356 (357)
T ss_dssp             SEEEEEEECC---
T ss_pred             CcEEEEECCCccc
Confidence            9999999986543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-38  Score=274.71  Aligned_cols=264  Identities=9%  Similarity=0.061  Sum_probs=212.2

Q ss_pred             cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCC
Q 016458           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK  144 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  144 (389)
                      .....|.+++|+|||+++|+++.|++|+  |...++.   +.+|...|.+++|+|+|       .++.+.+|+.+...  
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~--   78 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLE-------FENKLDFELAQQNG--   78 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC--
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCC-------CcceEEEEeCCCce--
Confidence            3457899999999999999999999999  7555544   46899999999999999       46666666543211  


Q ss_pred             CCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC-----CeeEEEeeCCCC
Q 016458          145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA-----DVLSVSISGSNS  219 (389)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~  219 (389)
                            ...+ .|...|.+++|+|+| .+|++++.||.|++||...  .+..+     . |..     .+.+++|+| ++
T Consensus        79 ------~~~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l-----~-~~~~~~~~sv~svafSP-DG  141 (588)
T 2j04_A           79 ------LLNS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNL-----D-SKGNLSSRTYHCFEWNP-IE  141 (588)
T ss_dssp             ------SSTT-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEEC-----C-CSSCSTTTCEEEEEECS-SS
T ss_pred             ------Eeec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeec-----c-CCCccccccEEEEEEcC-CC
Confidence                  1111 457889999999998 7899999999999999544  44444     3 443     599999999 89


Q ss_pred             cEEEEeeCCCceEEEeCCCCCc------ceeEE----eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCcee---e
Q 016458          220 RMFVSGSCDSTARLWDTRVASR------AVRTF----HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL---Q  286 (389)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~------~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~  286 (389)
                      ++|++|+.||+|++||+..+..      .+..+    .+|...|.+++|+|+|  +++++.|+.|++||+..+...   .
T Consensus       142 ~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~  219 (588)
T 2j04_A          142 SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSR  219 (588)
T ss_dssp             SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEE
T ss_pred             CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccccee
Confidence            9999999999999999987621      24665    5677899999999999  888999999999999887632   2


Q ss_pred             EeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEE--CCCCCeEEeeeCC
Q 016458          287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL--SADGSALCTGSWD  364 (389)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d  364 (389)
                      .+...    +...|.+++|+  |+.|++++ ++.|++||+.+++.....    .+|.+.|.+++|  +||+..|++++.|
T Consensus       220 tL~~~----h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~----~gh~~~V~~va~~~s~d~~~La~a~ed  288 (588)
T 2j04_A          220 MIQNA----SRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK----TGSLENFHIIPLNHEKESTILLMSNKT  288 (588)
T ss_dssp             EEECC----CSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE----CSCCSCCCEEEETTCSSCEEEEECSSC
T ss_pred             eeccc----ccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE----cCCCceEEEEEeeeCCCCCEEEEEcCC
Confidence            33222    22359999999  68999887 699999999988774443    479999999999  9999999999999


Q ss_pred             CeeEEeecceecc
Q 016458          365 TNLKVNLGFWRVQ  377 (389)
Q Consensus       365 g~i~i~~~~W~~~  377 (389)
                      |. ++    |..+
T Consensus       289 G~-kl----w~~d  296 (588)
T 2j04_A          289 SY-KV----LLED  296 (588)
T ss_dssp             EE-EE----EESS
T ss_pred             CC-EE----Eeec
Confidence            99 99    9875

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-37  Score=274.07  Aligned_cols=262  Identities=17%  Similarity=0.296  Sum_probs=227.9

Q ss_pred             CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc-------------
Q 016458           45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-------------  111 (389)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-------------  111 (389)
                      .+.....|+ ........+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+...             
T Consensus       128 ~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (425)
T 1r5m_A          128 ENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDG  206 (425)
T ss_dssp             TTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------C
T ss_pred             CCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCc
Confidence            344556677 566778889999999999999999999999999999999999999999888877766             


Q ss_pred             --EEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          112 --VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       112 --v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                        +.+++|+|++ .+++++.+|.|++||+..+.       ....+..|...|.+++|+|++ .+|++++.||.|++||+.
T Consensus       207 ~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~  277 (425)
T 1r5m_A          207 SLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT-------PTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGG  277 (425)
T ss_dssp             CCBSCCEEEETT-EEEEECGGGCEEEEETTCSS-------CSEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSS
T ss_pred             ceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc-------eeeeeccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECC
Confidence              8999999875 47888899999999998754       456677899999999999997 689999999999999999


Q ss_pred             CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe
Q 016458          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  269 (389)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  269 (389)
                      ++.....+     ..|...+.+++|+| ++ ++++++.||.|++||+++. ..+..+..|...|.+++|+|++++|++++
T Consensus       278 ~~~~~~~~-----~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  349 (425)
T 1r5m_A          278 NGNSQNCF-----YGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAGRISQDGQKYAVAF  349 (425)
T ss_dssp             SBSCSEEE-----CCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTTT-EEEEEEECTTCCEEEEEECTTSSEEEEEE
T ss_pred             CCccceEe-----cCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCCC-cEeEecccCCccEEEEEEcCCCCEEEEEE
Confidence            98888887     67889999999999 55 9999999999999999987 77888888999999999999999999999


Q ss_pred             cCCeEEEEECCCCc--------------------eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          270 DDGTCRLFDIRTGH--------------------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       270 ~dg~i~i~d~~~~~--------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      .||.|++||++++.                    .+..+..+..   ...|++++|+|++++|++++.||.|++||+.
T Consensus       350 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          350 MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD---NDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             TTSCEEEEECHHHHC--------------CEECCEEEEECCTTC---CCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             CCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCccc---CCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            99999999998877                    5555544321   1159999999999999999999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.8e-37  Score=267.77  Aligned_cols=267  Identities=15%  Similarity=0.134  Sum_probs=214.3

Q ss_pred             EEeCCCCCeeEEEeeCCCcEEEEEECCCC-cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCC
Q 016458           93 VWNALTSQKTHAIKLPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED  171 (389)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  171 (389)
                      +|+.........+..|...|.+++|+|++ ++|++|+.||.|++||+.++.     ........+|...|.+++|+|++.
T Consensus        57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~  131 (383)
T 3ei3_B           57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN-----KTSFIQGMGPGDAITGMKFNQFNT  131 (383)
T ss_dssp             HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT-----CEEEECCCSTTCBEEEEEEETTEE
T ss_pred             cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc-----cceeeecCCcCCceeEEEeCCCCC
Confidence            34445566677788899999999999999 999999999999999998744     112222347999999999999544


Q ss_pred             cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeecc
Q 016458          172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG  251 (389)
Q Consensus       172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  251 (389)
                      .+|++++.|+.|++||+.+.. ...+...  ..+...|.+++|+| ++.+|++++.|+.|++||++  ...+..+..|..
T Consensus       132 ~~l~s~~~d~~i~iwd~~~~~-~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~  205 (383)
T 3ei3_B          132 NQLFVSSIRGATTLRDFSGSV-IQVFAKT--DSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD--GHEIFKEKLHKA  205 (383)
T ss_dssp             EEEEEEETTTEEEEEETTSCE-EEEEECC--CCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT--SCEEEEEECSSS
T ss_pred             CEEEEEeCCCEEEEEECCCCc-eEEEecc--CCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC--CCEEEEeccCCC
Confidence            899999999999999999644 3343211  34558899999999 88899999999999999995  367888899999


Q ss_pred             ceEEEEEecCCC-EEEEEecCCeEEEEECCC----CceeeEeeccCCCCCCCCeeEEEeCC-CCCEEEEEecCCcEEEEE
Q 016458          252 DVNTVKFFPDGN-RFGTGSDDGTCRLFDIRT----GHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWD  325 (389)
Q Consensus       252 ~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d  325 (389)
                      .|.+++|+|+++ +|++++.|+.|++||+++    +.....+ .     +...|.+++|+| ++++|++++.||.|++||
T Consensus       206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~-----~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd  279 (383)
T 3ei3_B          206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-P-----HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYS  279 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-E-----CSSCEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred             cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-c-----CCCceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence            999999999999 999999999999999998    4444444 2     233599999999 999999999999999999


Q ss_pred             cccceEEEeecCcC---CCCC----------CCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          326 TLLAKVVLNLGSLQ---NSHE----------GRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       326 ~~~~~~~~~~~~~~---~~~~----------~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      +.+++....+....   ..|.          +.+..++|+|++++  +++.||.|++    ||+.+++..
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~i----wd~~~~~~~  343 (383)
T 3ei3_B          280 SYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDI----YDANSGGLV  343 (383)
T ss_dssp             TTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEE----EETTTCCEE
T ss_pred             CCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEE----EecCCCcee
Confidence            99876655542100   1122          34555778888877  8889999999    999988764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-38  Score=268.78  Aligned_cols=274  Identities=13%  Similarity=0.056  Sum_probs=214.3

Q ss_pred             EEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCC--CCCCCc-c
Q 016458           74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD--KDGNLP-V  150 (389)
Q Consensus        74 ~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~-~  150 (389)
                      .+.+++.+|++|+.||+|++||+.+++.+..+.  ...|.++.|+|+   +++++.|+.|++|+......  ...... .
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            344577899999999999999999999888877  356788889988   99999999999998774210  000111 1


Q ss_pred             eeeecccccceEEEEEee--CCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC
Q 016458          151 SRMLSGHKGYVSCCQYVP--DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  228 (389)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  228 (389)
                      .....+|.+.|.+++|+|  ++ .++++++.||.|++||++++.......    ..+...+.+++|+| ++.+|++|+.|
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~----~~~~~~i~~~~~~p-dg~~lasg~~d  191 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHS----AKSDVEYSSGVLHK-DSLLLALYSPD  191 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEEC----CCSSCCCCEEEECT-TSCEEEEECTT
T ss_pred             EEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEe----cCCCCceEEEEECC-CCCEEEEEcCC
Confidence            222336678999999999  87 789999999999999999998866552    34556799999999 88999999999


Q ss_pred             CceEEEeCCCCCcceeEEee-eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe--eEEEe
Q 016458          229 STARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV--TSIAF  305 (389)
Q Consensus       229 g~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i--~~~~~  305 (389)
                      |.|++||+++.......+.. |..+|.+++|+|++.+|++++ |+.|++||+++++....+.....  +...+  .+++|
T Consensus       192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~  268 (343)
T 3lrv_A          192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTI--PEFKTGTVTYDI  268 (343)
T ss_dssp             SCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-------CCEEEEE
T ss_pred             CEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccc--ccccccceEEEE
Confidence            99999999988433367777 999999999999999999999 55999999999876654433111  11123  46999


Q ss_pred             CCCCCEEEEEec-CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC---CCCeEEeeeCCCeeEE
Q 016458          306 SISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA---DGSALCTGSWDTNLKV  369 (389)
Q Consensus       306 ~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i  369 (389)
                      +|+|++|++++. |+.+++|++.........        .++..++|.+   +...+++++.||.+.+
T Consensus       269 ~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~  328 (343)
T 3lrv_A          269 DDSGKNMIAYSNESNSLTIYKFDKKTKNWTK--------DEESALCLQSDTADFTDMDVVCGDGGIAA  328 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTTCSEEE--------EEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred             CCCCCEEEEecCCCCcEEEEEEcccccceEe--------cCceeEecCccccccceeEEEecCCceEE
Confidence            999999999988 999999998765433222        4677888888   8889999999999988

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4.7e-36  Score=265.22  Aligned_cols=289  Identities=14%  Similarity=0.139  Sum_probs=237.7

Q ss_pred             eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEE-----EeeCCCcEEEEEECCCCcEEEEecCCCc
Q 016458           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA-----IKLPCAWVMTCAFSPTGQSVACGGLDSV  132 (389)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (389)
                      .....+..+. .+.+++|+|++.++++++.++.|++||+.+++....     +..|...|.+++|++++.++++++.|+.
T Consensus       114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  192 (433)
T 3bws_A          114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA  192 (433)
T ss_dssp             EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred             eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence            5555665554 466999999777888888899999999999988763     3467788999999999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (389)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  212 (389)
                      |++||+.++.       ....+..|...+.+++|+|++..++++++.|+.|++||+.+++....+      .....+.++
T Consensus       193 v~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~------~~~~~~~~~  259 (433)
T 3bws_A          193 VHVFDLKTLA-------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT------DKIGLPRGL  259 (433)
T ss_dssp             EEEEETTTCC-------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC------CCCSEEEEE
T ss_pred             EEEEECCCce-------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe------cCCCCceEE
Confidence            9999998754       556677888999999999998555566668999999999999887776      234559999


Q ss_pred             EeeCCCCcEEEEee--------CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEE-EEEecCCeEEEEECCCCc
Q 016458          213 SISGSNSRMFVSGS--------CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDDGTCRLFDIRTGH  283 (389)
Q Consensus       213 ~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~  283 (389)
                      +|+| +++.+++++        .||.|++||+++. +....+ .|...+.+++|+|+++.+ ++++.|+.|++||+.+++
T Consensus       260 ~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~-~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~  336 (433)
T 3bws_A          260 LLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKE-KLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK  336 (433)
T ss_dssp             EECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTT-EEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred             EEcC-CCCEEEEEECCCCccccCCCeEEEEECCCC-cEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence            9999 777777777        4889999999876 444443 566789999999999755 666899999999999888


Q ss_pred             eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec---------------CCcEEEEEcccceEEEeecCcCCCCCCCeeE
Q 016458          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---------------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  348 (389)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  348 (389)
                      ....+...      ..+.+++|+|+|+++++++.               ||.|++||+.+++.+..+    .. ...+.+
T Consensus       337 ~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~----~~-~~~~~~  405 (433)
T 3bws_A          337 VQKSIPVF------DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW----EA-GNQPTG  405 (433)
T ss_dssp             EEEEEECS------SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE----EC-SSSEEE
T ss_pred             EEEEecCC------CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe----cC-CCCCce
Confidence            77666432      24899999999999988876               579999999999988887    33 457899


Q ss_pred             EEECCCCCeEEeeeC-CCeeEEeecceeccc
Q 016458          349 LGLSADGSALCTGSW-DTNLKVNLGFWRVQE  378 (389)
Q Consensus       349 ~~~~~~~~~l~~~~~-dg~i~i~~~~W~~~~  378 (389)
                      ++|+|+|++|++++. |+.|++    |+++.
T Consensus       406 ~~~s~dg~~l~~~~~~d~~i~v----~~~~~  432 (433)
T 3bws_A          406 LDVSPDNRYLVISDFLDHQIRV----YRRDG  432 (433)
T ss_dssp             EEECTTSCEEEEEETTTTEEEE----EEETT
T ss_pred             EEEcCCCCEEEEEECCCCeEEE----EEecC
Confidence            999999999998875 999999    99863

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.6e-37  Score=271.38  Aligned_cols=266  Identities=17%  Similarity=0.152  Sum_probs=206.3

Q ss_pred             CeeEEEeeCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee
Q 016458          100 QKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS  178 (389)
Q Consensus       100 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  178 (389)
                      ........|...|++++|+| ++++||+|+.||.|+|||+..+.     ......+.+|.+.|++++|+|.++.+|++++
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~-----~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s  184 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD-----KPTFIKGIGAGGSITGLKFNPLNTNQFYASS  184 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS-----CCEEECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred             eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC-----ceeEEEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence            44456677888999999999 56799999999999999998743     2244556789999999999986558999999


Q ss_pred             CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEE
Q 016458          179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF  258 (389)
Q Consensus       179 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~  258 (389)
                      .||+|++||++++........   ..+...+.+++|+| ++.+|++|+.||.|++||++.  +.+..+.+|...|.+++|
T Consensus       185 ~D~~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~--~~~~~~~~h~~~v~~v~~  258 (435)
T 4e54_B          185 MEGTTRLQDFKGNILRVFASS---DTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDG--KELWNLRMHKKKVTHVAL  258 (435)
T ss_dssp             SSSCEEEEETTSCEEEEEECC---SSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSS--CBCCCSBCCSSCEEEEEE
T ss_pred             CCCEEEEeeccCCceeEEecc---CCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCc--ceeEEEecccceEEeeee
Confidence            999999999987655444311   33455688999999 889999999999999999874  566778899999999999


Q ss_pred             ecCCC-EEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC
Q 016458          259 FPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS  337 (389)
Q Consensus       259 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  337 (389)
                      +|++. +|++++.|+.|++||+++.+....+...  ..+...|++++|+|+|++|++++.||.|++||+.++.....+..
T Consensus       259 ~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~--~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~  336 (435)
T 4e54_B          259 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS--LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP  336 (435)
T ss_dssp             CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBC--CBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC
T ss_pred             cCCCceEEEEecCcceeeEEecccccccceEEEe--eeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec
Confidence            99876 7889999999999999987655444221  23445699999999999999999999999999998877766632


Q ss_pred             cCCCCC--CCeeEEEECCCCCeEEeee------------CCCeeEEeecceecccCccc
Q 016458          338 LQNSHE--GRITCLGLSADGSALCTGS------------WDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       338 ~~~~~~--~~v~~~~~~~~~~~l~~~~------------~dg~i~i~~~~W~~~~~~~~  382 (389)
                      ....+.  ..+....|+|++.++++++            .++.|++    ||..+|++.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~i----wd~~~g~~~  391 (435)
T 4e54_B          337 HPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDV----FDGNSGKMM  391 (435)
T ss_dssp             CCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEE----ECSSSCCEE
T ss_pred             ccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEE----EECCCCcEE
Confidence            111111  1223345666555555443            3357899    999998764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=9.9e-37  Score=266.74  Aligned_cols=269  Identities=17%  Similarity=0.232  Sum_probs=220.9

Q ss_pred             CCCCCcccCCCcc----eeeeecccccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCCC-------CeeEEEeeCCCcE
Q 016458           45 QGRAPVSFGPTDL----VCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTS-------QKTHAIKLPCAWV  112 (389)
Q Consensus        45 ~~~~~~~~~~~~~----~~~~~l~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v  112 (389)
                      .+.....|+....    .....+.+|.+.|++++|+| ++++|++|+.||+|++||+.++       +.+..+..|...|
T Consensus        55 ~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v  134 (402)
T 2aq5_A           55 GGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV  134 (402)
T ss_dssp             SSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCE
T ss_pred             CCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeE
Confidence            3444555654332    34556889999999999999 8999999999999999999988       6688889999999


Q ss_pred             EEEEECCCC-cEEEEecCCCcEEEEeCCCCCCCCCCCcceeee--cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          113 MTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML--SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       113 ~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                      .+++|+|++ .+|++++.||.|++||+.++.       ....+  ..|...|.+++|+|++ .+|++++.||.|++||++
T Consensus       135 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~  206 (402)
T 2aq5_A          135 GIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-------AVLTLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPR  206 (402)
T ss_dssp             EEEEECSSBTTEEEEEETTSCEEEEETTTTE-------EEEEECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETT
T ss_pred             EEEEECcCCCCEEEEEcCCCEEEEEECCCCC-------ccEEEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCC
Confidence            999999998 699999999999999998754       55666  7899999999999987 789999999999999999


Q ss_pred             CCeeEEEecCcccCCCCCC-eeEEEeeCCCCcEEEEe---eCCCceEEEeCCCCCcceeEEe-eeccceEEEEEecCCCE
Q 016458          190 TGLRTSVFGGEFQSGHTAD-VLSVSISGSNSRMFVSG---SCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNR  264 (389)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~  264 (389)
                      ++.....+.    ..|... +.++.|+| ++.+|++|   +.|+.|++||++....++.... .|...+.+++|+|++++
T Consensus       207 ~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  281 (402)
T 2aq5_A          207 KGTVVAEKD----RPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNI  281 (402)
T ss_dssp             TTEEEEEEE----CSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTE
T ss_pred             CCceeeeec----cCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCE
Confidence            998887762    245444 89999999 78899998   7899999999998755444443 57788999999999999


Q ss_pred             EEE-EecCCeEEEEECCCCce-eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE
Q 016458          265 FGT-GSDDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  331 (389)
Q Consensus       265 l~~-~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (389)
                      |++ ++.||.|++||+.+++. +..+....   +..++.+++|+|++.++++  .++.+++|++.++..
T Consensus       282 l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          282 VYLCGKGDSSIRYFEITSEAPFLHYLSMFS---SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             EEEEETTCSCEEEEEECSSTTCEEEEEEEC---CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             EEEEEcCCCeEEEEEecCCCcceEeecccc---cCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence            965 55799999999998874 33333322   2345999999999998765  566899999987654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.2e-36  Score=268.91  Aligned_cols=275  Identities=24%  Similarity=0.460  Sum_probs=221.8

Q ss_pred             cCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcE
Q 016458           44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS  123 (389)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  123 (389)
                      ..+.....|+....+....+.+|.+.|.+++|  ++++|++|+.||+|++||+.+++.+..+..|...|.+++|+  +..
T Consensus       150 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~  225 (435)
T 1p22_A          150 LRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGM  225 (435)
T ss_dssp             ESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTE
T ss_pred             eCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCE
Confidence            44556678888889999999999999999999  67899999999999999999999999999999999999997  459


Q ss_pred             EEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccC
Q 016458          124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS  203 (389)
Q Consensus       124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  203 (389)
                      +++|+.||.|++||+..+.    .......+.+|...|.++.|  ++ .++++|+.||.|++||+.+++....+     .
T Consensus       226 l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~~~~-----~  293 (435)
T 1p22_A          226 MVTCSKDRSIAVWDMASPT----DITLRRVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEFVRTL-----N  293 (435)
T ss_dssp             EEEEETTSCEEEEECSSSS----CCEEEEEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCCEEEEE-----E
T ss_pred             EEEeeCCCcEEEEeCCCCC----CceeeeEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCcEEEEE-----c
Confidence            9999999999999998754    22234677889999999999  33 68999999999999999999999888     6


Q ss_pred             CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458          204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (389)
Q Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (389)
                      .|...|.++.++   ++++++|+.||.|++||++++ ..+..+.+|...|.+++|  ++.+|++|+.||.|++||+.++.
T Consensus       294 ~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          294 GHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             CCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred             CCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCC-CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence            889999999985   468999999999999999987 788899999999999999  78899999999999999997655


Q ss_pred             ---------eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEEC
Q 016458          284 ---------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  352 (389)
Q Consensus       284 ---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  352 (389)
                               ....+..     +...|.+++|  ++++|++++.||.|++||+.+.......     ....+..++.|.
T Consensus       368 ~~~~~~~~~~~~~~~~-----h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~  433 (435)
T 1p22_A          368 DPRAPAGTLCLRTLVE-----HSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAE-----PPRSPSRTYTYI  433 (435)
T ss_dssp             STTSCTTTTEEEEECC-----CSSCCCCEEE--CSSCEEECCSSSEEEEEC---------------------------
T ss_pred             CccccccchheeeccC-----CCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccC-----CCCCCccceeee
Confidence                     4555433     3335999999  7889999999999999999877655443     223344555554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.6e-37  Score=275.81  Aligned_cols=265  Identities=21%  Similarity=0.347  Sum_probs=209.8

Q ss_pred             CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCC----CCCCCcceeeecccc------------cceEEEEEeeCCC
Q 016458          108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD----KDGNLPVSRMLSGHK------------GYVSCCQYVPDED  171 (389)
Q Consensus       108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~  171 (389)
                      +.+.|.+++|+|++++|++|+.||.|++|++.....    ..........+.+|.            ..|.+++|+|+++
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            457899999999999999999999999999987541    122333567788898            8899999999864


Q ss_pred             -cEEEEeeCCCeEEEEeCCCCeeEEEe-----------------------------------cCcccCCCCCCeeEEEee
Q 016458          172 -THLITSSGDQTCVLWDITTGLRTSVF-----------------------------------GGEFQSGHTADVLSVSIS  215 (389)
Q Consensus       172 -~~l~~~~~dg~i~iwd~~~~~~~~~~-----------------------------------~~~~~~~~~~~v~~~~~~  215 (389)
                       .+|++++.|+.|++||+.++......                                   .......|...|.+++|+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             58999999999999999765432110                                   001125789999999999


Q ss_pred             CCCCcEEEEeeCCCceEEEeCCCCCcceeE-------EeeeccceEEEEEecCC-CEEEEEecCCeEEEEECCCCce---
Q 016458          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRT-------FHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQ---  284 (389)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~---  284 (389)
                      | ++++|++| .|+.|++||++.....+..       +.+|...|.+++|+|++ ++|++++.||.|++||+++++.   
T Consensus       187 ~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          187 S-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             T-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             C-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9 88899998 7999999999854344442       45788999999999998 9999999999999999998876   


Q ss_pred             -eeEeeccCCCC-------CCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc-ceEEEeecCcCCCCCCC----------
Q 016458          285 -LQVYYQQHGEN-------EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGR----------  345 (389)
Q Consensus       285 -~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~----------  345 (389)
                       ...+..+....       +...|.+++|+|+|++|++++. +.|++||+.. ++.+..+    ..|...          
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~----~~~~~~~~~l~~~~~~  339 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY----QVHEYLRSKLCSLYEN  339 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE----ESCGGGTTTHHHHHHT
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee----eccccccccccccccc
Confidence             45554433210       1125999999999999999998 9999999987 7777777    455432          


Q ss_pred             -----eeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          346 -----ITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       346 -----v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                           +..++|+|++++|++|+.||.|++    ||+.+++...
T Consensus       340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~i----wd~~~~~~~~  378 (447)
T 3dw8_B          340 DCIFDKFECCWNGSDSVVMTGSYNNFFRM----FDRNTKRDIT  378 (447)
T ss_dssp             SGGGCCCCEEECTTSSEEEEECSTTEEEE----EETTTCCEEE
T ss_pred             cccccceEEEECCCCCEEEEeccCCEEEE----EEcCCCccee
Confidence                 334999999999999999999999    9999987643

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-38  Score=279.18  Aligned_cols=251  Identities=15%  Similarity=0.056  Sum_probs=200.6

Q ss_pred             CCCcEEEEEECCCC---------cEEEE-------------------ecCCCcEEEEeCCCCCCCCCCCcceeeeccccc
Q 016458          108 PCAWVMTCAFSPTG---------QSVAC-------------------GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG  159 (389)
Q Consensus       108 ~~~~v~~~~~~~~~---------~~l~~-------------------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  159 (389)
                      ..+.|.+++|+|++         ++||+                   ++.|+.|+||++..+..   .......+..|.+
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~---~~~~~~~l~~~~~  208 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTL---HCVKVQTIVHSFG  208 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTC---CEEEEEEEEECCC
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCC---CceEEEEEEecCC
Confidence            45667777777765         55555                   55788999999976431   1111234567788


Q ss_pred             ceEEEEEeeCC-----CcEEEEeeCCCeEEEEeCCCCeeE-----------EEecCcccCCCCCCeeEEEeeCCCCcEEE
Q 016458          160 YVSCCQYVPDE-----DTHLITSSGDQTCVLWDITTGLRT-----------SVFGGEFQSGHTADVLSVSISGSNSRMFV  223 (389)
Q Consensus       160 ~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  223 (389)
                      .|.+++|+|++     ..+|++++.||+|++||+..+...           ..+     ..|...|.+++|++ + ..|+
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l-----~~h~~~v~sv~~s~-~-~~la  281 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTL-----SLADSLITTFDFLS-P-TTVV  281 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEE-----CCTTTCEEEEEESS-S-SEEE
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEE-----EcCCCCEEEEEecC-C-CeEE
Confidence            99999999962     268999999999999999876421           123     57889999999997 4 4799


Q ss_pred             EeeCCCceEEEeCCCCCcceeEEeeeccceEEE--EEecCC-CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe
Q 016458          224 SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV--KFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV  300 (389)
Q Consensus       224 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i  300 (389)
                      +|+.||+|++||++++..+...+.+|...|.++  +|+|++ .+|++++.|++|++||+++++....+..+...   ..+
T Consensus       282 sgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~---~~v  358 (524)
T 2j04_B          282 CGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG---SNL  358 (524)
T ss_dssp             EEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC---CSC
T ss_pred             EEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc---Ccc
Confidence            999999999999997655667788999999999  578887 89999999999999999988776655433211   137


Q ss_pred             eEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      .+++|+|+++.+++++.|+.|++||++++..+..+    .+|.+.|++++|+|+|++|++|+.||+|++    |++..+
T Consensus       359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l----~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~l----wd~~~~  429 (524)
T 2j04_B          359 VPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL----VSRETTITAIGVSRLHPMVLAGSADGSLII----TNAARR  429 (524)
T ss_dssp             CCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE----EECSSCEEEEECCSSCCBCEEEETTTEEEC----CBSCSS
T ss_pred             cceEeCCCcCeEEEeCCCCcEEEEECcccccceee----ecCCCceEEEEeCCCCCeEEEEECCCEEEE----EechHh
Confidence            88999999999999999999999999998877777    689999999999999999999999999999    998665

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=285.67  Aligned_cols=260  Identities=18%  Similarity=0.255  Sum_probs=213.3

Q ss_pred             EEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC--CCcEEEEeeCC
Q 016458          103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD--EDTHLITSSGD  180 (389)
Q Consensus       103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d  180 (389)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++|++..+.     ......+.+|.+.|.+++|+|+  + .++++|+.|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~D   76 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYD   76 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETT
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-----CccceeccCCcCceEEEEecCCCCC-CEEEEEeCC
Confidence            4567899999999999999999999999999999997422     2356778899999999999987  5 789999999


Q ss_pred             CeEEEEeCCCCe--eEEEecCcccCCCCCCeeEEEeeCCC--CcEEEEeeCCCceEEEeCCCCC-cceeEEeeeccceEE
Q 016458          181 QTCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNT  255 (389)
Q Consensus       181 g~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~  255 (389)
                      |.|++||+.++.  ....+     ..|...|.+++|+| +  ++++++|+.||.|++||++... .....+.+|...|.+
T Consensus        77 g~I~vwd~~~~~~~~~~~~-----~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~  150 (753)
T 3jro_A           77 GKVLIWKEENGRWSQIAVH-----AVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS  150 (753)
T ss_dssp             SCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEE
T ss_pred             CeEEEEECCCCcccccccc-----cCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEE
Confidence            999999999986  55555     67999999999999 5  8899999999999999998762 345567789999999


Q ss_pred             EEEec-------------CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC---CCEEEEEecCC
Q 016458          256 VKFFP-------------DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS---GRLLFAGYSNG  319 (389)
Q Consensus       256 ~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg  319 (389)
                      ++|+|             ++.+|++|+.||.|++||++++.......... ..+...|++++|+|+   +++|++|+.||
T Consensus       151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg  229 (753)
T 3jro_A          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDR  229 (753)
T ss_dssp             EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred             EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee-cCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence            99999             58999999999999999998875332221111 223446999999999   89999999999


Q ss_pred             cEEEEEcccceEEEe-ecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          320 DCYVWDTLLAKVVLN-LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       320 ~i~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      .|++||+.++..... .......|...|++++|+|+|++|++++.||.|++    |++.++
T Consensus       230 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~v----wd~~~~  286 (753)
T 3jro_A          230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL----WKENLE  286 (753)
T ss_dssp             CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEEC----CBCCSS
T ss_pred             EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEE----EecCCC
Confidence            999999988642111 11111568899999999999999999999999999    999854

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=5.3e-35  Score=247.63  Aligned_cols=268  Identities=15%  Similarity=0.234  Sum_probs=222.2

Q ss_pred             CCCCcccCCCcceeeeec--ccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcE
Q 016458           46 GRAPVSFGPTDLVCCRTL--QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS  123 (389)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l--~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  123 (389)
                      +.....|+....++.+.+  .+|...|++++|+|++++|++|+.||+|++||+.+++.+..+..|...+.++.+  ++..
T Consensus        44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~  121 (318)
T 4ggc_A           44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYI  121 (318)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTE
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCE
Confidence            445677888887777765  467889999999999999999999999999999999999999999988877655  5779


Q ss_pred             EEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccC
Q 016458          124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS  203 (389)
Q Consensus       124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  203 (389)
                      +++++.++.+++|+.....      .....+.+|...+..+.+.+++ .++++++.||.|++||+.+++...... ....
T Consensus       122 l~s~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~  193 (318)
T 4ggc_A          122 LSSGSRSGHIHHHDVRVAE------HHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPL-QTFT  193 (318)
T ss_dssp             EEEEETTSEEEEEETTSSS------CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCS-EEEC
T ss_pred             EEEEecCCceEeeecCCCc------eeEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccce-eeec
Confidence            9999999999999987643      3567788999999999999997 789999999999999998765322111 0115


Q ss_pred             CCCCCeeEEEeeCCCCcEEE--EeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe--cCCeEEEEEC
Q 016458          204 GHTADVLSVSISGSNSRMFV--SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDI  279 (389)
Q Consensus       204 ~~~~~v~~~~~~~~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~  279 (389)
                      .+...|.++.++|.+..++.  +++.++.|++||.+.. ... ....+...+..+.|+|++..+++++  .|+.|++||+
T Consensus       194 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-~~~-~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~  271 (318)
T 4ggc_A          194 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACL-SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY  271 (318)
T ss_dssp             CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-CEE-EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred             ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-ccc-ccccceeeeeeeeecccccceEEEEEcCCCEEEEEEC
Confidence            67788999999997666654  5667899999999866 333 3445778899999999999887755  7999999999


Q ss_pred             CCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce
Q 016458          280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK  330 (389)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (389)
                      ++++.+..+..+.     ..|++++|+|+|++|++|+.||.|+|||+....
T Consensus       272 ~~~~~~~~l~gH~-----~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          272 PTMAKVAELKGHT-----SRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             TTCCEEEEECCCS-----SCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             CCCcEEEEEcCCC-----CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            9999988876543     359999999999999999999999999987543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.5e-34  Score=252.11  Aligned_cols=270  Identities=15%  Similarity=0.188  Sum_probs=222.2

Q ss_pred             CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE-EEecCCCcEEEEeCCCCCCCCCCCcceeeecccc
Q 016458           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK  158 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  158 (389)
                      .++++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++++ ++++.|+.|++||+.+++       ....+..+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~-------~~~~~~~~~   74 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN-------VIATVPAGS   74 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-------EEEEEECSS
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCe-------EEEEEECCC
Confidence            3678889999999999999999888887754 8999999999977 677789999999998754       444454444


Q ss_pred             cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE-EEeeCCCceEEEeCC
Q 016458          159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTR  237 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~  237 (389)
                       .+.+++|+|++..++++++.++.|++||+.+++....+     . +...+.+++|+| +++.+ ++++.++.|++||++
T Consensus        75 -~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~-----~-~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~  146 (391)
T 1l0q_A           75 -SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV-----K-TGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTV  146 (391)
T ss_dssp             -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-----E-CSSSEEEEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred             -CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE-----e-CCCCcceEEECC-CCCEEEEEeCCCCEEEEEECC
Confidence             89999999998555566667899999999999888776     2 345789999999 55544 788889999999998


Q ss_pred             CCCcceeEEeeeccceEEEEEecCCCEE-EEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458          238 VASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (389)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (389)
                      +. +....+..+ ..+.+++|+|++++| ++++.++.|++||+++++....+...      ..+.+++|+|++++|++++
T Consensus       147 ~~-~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~------~~~~~~~~~~~g~~l~~~~  218 (391)
T 1l0q_A          147 TK-AVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE------AAPSGIAVNPEGTKAYVTN  218 (391)
T ss_dssp             TT-EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS------SEEEEEEECTTSSEEEEEE
T ss_pred             CC-cEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC------CCccceEECCCCCEEEEEe
Confidence            77 666666654 457999999999887 57778999999999998777665432      2488999999999999888


Q ss_pred             ---cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeE-EeeeCCCeeEEeecceecccCccc
Q 016458          317 ---SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL-CTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       317 ---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                         .++.|++||+.+++.+..+    ..|. .+.+++|+|++++| ++++.|+.|++    ||+.++++.
T Consensus       219 ~~~~~~~v~~~d~~~~~~~~~~----~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v----~d~~~~~~~  279 (391)
T 1l0q_A          219 VDKYFNTVSMIDTGTNKITARI----PVGP-DPAGIAVTPDGKKVYVALSFXNTVSV----IDTATNTIT  279 (391)
T ss_dssp             ECSSCCEEEEEETTTTEEEEEE----ECCS-SEEEEEECTTSSEEEEEETTTTEEEE----EETTTTEEE
T ss_pred             cCcCCCcEEEEECCCCeEEEEE----ecCC-CccEEEEccCCCEEEEEcCCCCEEEE----EECCCCcEE
Confidence               6899999999999988887    3443 57899999999987 67788999999    999988764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.5e-36  Score=257.62  Aligned_cols=249  Identities=10%  Similarity=0.111  Sum_probs=207.9

Q ss_pred             eeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCc-EEEEeeCCCeEE
Q 016458          106 KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT-HLITSSGDQTCV  184 (389)
Q Consensus       106 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~  184 (389)
                      ..|.+.|.+++|+|++++|++++.||.|++|++..+.    ..........|...|.+++|+|++ . ++++++.||.|+
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~   82 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA----KNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEIL   82 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT----TEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC----ccccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEE
Confidence            4688899999999999999999999999999998643    111234556899999999999997 7 899999999999


Q ss_pred             EEeC-CCCeeEEEecCcccCC--CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC---------CCcceeEEeeeccc
Q 016458          185 LWDI-TTGLRTSVFGGEFQSG--HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV---------ASRAVRTFHGHEGD  252 (389)
Q Consensus       185 iwd~-~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~  252 (389)
                      +||+ .++.. ..+     ..  |...|.+++|+|  ++++++++.|+.|++||++.         . .++..+. |...
T Consensus        83 ~wd~~~~~~~-~~~-----~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~-~~~~  152 (342)
T 1yfq_A           83 KVDLIGSPSF-QAL-----TNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKN-LNSNNTK-VKNK  152 (342)
T ss_dssp             EECSSSSSSE-EEC-----BSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEE-SCSSSSS-SCCC
T ss_pred             EEEeccCCce-Eec-----cccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccC-CeeeEEe-eCCc
Confidence            9999 87765 344     46  899999999998  78999999999999999986         4 4444555 8889


Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCC-CceeeEeeccCCCCCCCCeeEEEeCC-CCCEEEEEecCCcEEEEEcccc-
Q 016458          253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLA-  329 (389)
Q Consensus       253 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-  329 (389)
                      |.+++|+|++  +++++.|+.|++||+++ +........   ..+...+.+++|+| +++++++++.||.|++|++... 
T Consensus       153 v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~  227 (342)
T 1yfq_A          153 IFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEE---SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG  227 (342)
T ss_dssp             EEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEE---CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred             eEEEEecCCc--EEEEeCCCeEEEEECCccccccceeee---cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCC
Confidence            9999999887  99999999999999998 554322221   12233599999999 9999999999999999999876 


Q ss_pred             -----eEEEeecCcCCCC---------CCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          330 -----KVVLNLGSLQNSH---------EGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       330 -----~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                           +....+    ..|         ...|.+++|+|++++|++++.||.|++    ||+.+++..
T Consensus       228 ~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v----wd~~~~~~~  286 (342)
T 1yfq_A          228 DDYNSSKRFAF----RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC----WNLQTRKKI  286 (342)
T ss_dssp             CSTTCTTCEEE----ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEE----EETTTTEEE
T ss_pred             cccccccceee----ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEE----EcCccHhHh
Confidence                 666666    344         449999999999999999999999999    999988754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.4e-36  Score=264.33  Aligned_cols=239  Identities=15%  Similarity=0.118  Sum_probs=175.8

Q ss_pred             CCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEee--------CCCcEEEEeeCCCeEEEEeCC
Q 016458          118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP--------DEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~l~~~~~dg~i~iwd~~  189 (389)
                      .+++.+|++++.|++|++||...+...  .......+.+|.+.|.+++|+|        ++ ++|++++.|++|++||+.
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~~--~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~  174 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETII--TQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLT  174 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEEE--EEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCccc--eeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECC
Confidence            345668999999999999999874311  1112345679999999999998        54 799999999999999999


Q ss_pred             CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcce------------------------eE
Q 016458          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV------------------------RT  245 (389)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------------------------~~  245 (389)
                      ++.....+     ..|...+.+++|+|.+.++|++++.||.|++||+++.....                        ..
T Consensus       175 ~~~~~~~~-----~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  249 (393)
T 4gq1_A          175 DEGPILAG-----YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH  249 (393)
T ss_dssp             TTEEEEEE-----EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred             CCceeeee-----cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence            88777766     57889999999999666789999999999999998763211                        11


Q ss_pred             EeeeccceEEEEEe-cCCCEEEEEecCCeEEEEECCCCceeeEeeccCCC-------------CCCCCeeEEEeCC--CC
Q 016458          246 FHGHEGDVNTVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------------NEIPHVTSIAFSI--SG  309 (389)
Q Consensus       246 ~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~--~~  309 (389)
                      ..+|...+.++.|+ |+++.|++++.|+.+++||+..+.....+..+...             ..........|+|  ++
T Consensus       250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (393)
T 4gq1_A          250 SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMD  329 (393)
T ss_dssp             --CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTT
T ss_pred             cccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCC
Confidence            23567788999987 79999999999999999999877655444322111             0001122233433  34


Q ss_pred             CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458          310 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK  368 (389)
Q Consensus       310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  368 (389)
                      .++++|+.||.|++||+.+++....+    ..|..+|.+++|+|||++||+++.||.+.
T Consensus       330 ~~~~sgs~Dg~V~lwd~~~~~~~~~~----~~~~~~V~svafspdG~~LA~as~~Gv~l  384 (393)
T 4gq1_A          330 YFATAHSQHGLIQLINTYEKDSNSIP----IQLGMPIVDFCWHQDGSHLAIATEGSVLL  384 (393)
T ss_dssp             EEEEEETTTTEEEEEETTCTTCCEEE----EECSSCEEEEEECTTSSEEEEEESSEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCcEEEEe----cCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            46777888999999999998887777    67888999999999999999999877544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3e-35  Score=257.90  Aligned_cols=287  Identities=19%  Similarity=0.256  Sum_probs=202.6

Q ss_pred             cccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCC---CcEEEEecCCCcEEEEeCCC
Q 016458           65 GHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT---GQSVACGGLDSVCSIFNLNS  140 (389)
Q Consensus        65 ~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vw~~~~  140 (389)
                      +|.+.|.+++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.|+|.   +.++++++.+|.|++||+..
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  175 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS  175 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence            6999999999999 77899999999999999999998887776 5677999999984   45999999999999999987


Q ss_pred             CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEecC----------cccCCCCCCe
Q 016458          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGG----------EFQSGHTADV  209 (389)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~----------~~~~~~~~~v  209 (389)
                      +.       ....+..|...|.+++|+|++..++++++.||.|++||++++. ....+..          .....|...|
T Consensus       176 ~~-------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  248 (408)
T 4a11_B          176 GS-------CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV  248 (408)
T ss_dssp             SC-------CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred             cc-------eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence            54       5567788999999999999986679999999999999998765 2222210          1114678899


Q ss_pred             eEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee-----ccceEEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ  284 (389)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  284 (389)
                      .+++|+| ++.+|++++.||.|++||+++.. .......+     ...+........+..+++++.|+.|++||+.+++.
T Consensus       249 ~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~  326 (408)
T 4a11_B          249 NGLCFTS-DGLHLLTVGTDNRMRLWNSSNGE-NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ  326 (408)
T ss_dssp             EEEEECT-TSSEEEEEETTSCEEEEETTTCC-BCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE
T ss_pred             eEEEEcC-CCCEEEEecCCCeEEEEECCCCc-cceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc
Confidence            9999999 88999999999999999999873 33222211     11222222233456677888899999999999998


Q ss_pred             eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC-CCCeEEeeeC
Q 016458          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSW  363 (389)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  363 (389)
                      +..+..+..     .|++++|+|++++|++++.||.|++||+.+++.+....    .+.   ....+.+ +...+.+++.
T Consensus       327 ~~~~~~~~~-----~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~  394 (408)
T 4a11_B          327 ITMLKGHYK-----TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD----ETT---TKSQLNPAFEDAWSSSDE  394 (408)
T ss_dssp             EEEECCCSS-----CEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------------------
T ss_pred             eeeeccCCC-----eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC----ceE---eccccccccceeecccCc
Confidence            888765443     59999999999999999999999999999988776542    221   1122333 3445667778


Q ss_pred             CCeeEEeecceecc
Q 016458          364 DTNLKVNLGFWRVQ  377 (389)
Q Consensus       364 dg~i~i~~~~W~~~  377 (389)
                      |+.+++    |+..
T Consensus       395 ~~~~~~----W~~~  404 (408)
T 4a11_B          395 EGGTSA----WSHP  404 (408)
T ss_dssp             --------------
T ss_pred             cCceee----cCCc
Confidence            999999    9765

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.8e-36  Score=258.12  Aligned_cols=248  Identities=10%  Similarity=0.081  Sum_probs=193.4

Q ss_pred             eecccccCcEEEEEEcCCCCeEEEE-----------ecCCcEEEEeCCCCCeeEEE---------eeCCCcEEEEEECCC
Q 016458           61 RTLQGHAGKVYSLDWTSERNRIVSA-----------SQDGRLIVWNALTSQKTHAI---------KLPCAWVMTCAFSPT  120 (389)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~~~-----------~~dg~v~iw~~~~~~~~~~~---------~~~~~~v~~~~~~~~  120 (389)
                      ..|.+|...|.++++++  +.+++|           +.|+.+++|++.+.......         ..+...+.+++|+||
T Consensus        67 ~~l~~~~~~v~s~~~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD  144 (365)
T 4h5i_A           67 FALEDNDDSPTAIDASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE  144 (365)
T ss_dssp             EECCTTSCCCCEEEEET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred             EEccCCCCceEEEEeCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence            35788999999998765  466655           45778999998765432221         123356899999999


Q ss_pred             CcEEEEe--cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec
Q 016458          121 GQSVACG--GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (389)
Q Consensus       121 ~~~l~~~--~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  198 (389)
                      |++++++  +.|+.|+|||+.+..       ....+ .|.+.|.+++|+|++ .++++++.+ .+++|+..++.......
T Consensus       145 g~~la~as~~~d~~i~iwd~~~~~-------~~~~~-~~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~~~  214 (365)
T 4h5i_A          145 GTVAAIASSKVPAIMRIIDPSDLT-------EKFEI-ETRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIARKT  214 (365)
T ss_dssp             SSCEEEEESCSSCEEEEEETTTTE-------EEEEE-ECSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEeECCCCc-------EEEEe-CCCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcceeeee
Confidence            9998654  478999999998754       34444 477889999999998 678887754 56667766666554332


Q ss_pred             CcccCCCCCCeeEEEeeCCCCcEEEEeeCCC----ceEEEeCCCCCc---ceeEEeeeccceEEEEEecCCCEEEEEecC
Q 016458          199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDS----TARLWDTRVASR---AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  271 (389)
Q Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  271 (389)
                      .   ..|...|.+++|+| ++.++++++.|+    .+++||+.....   ....+.+|..+|++++|+|+|++|++|+.|
T Consensus       215 ~---~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D  290 (365)
T 4h5i_A          215 D---FDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND  290 (365)
T ss_dssp             C---CCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT
T ss_pred             c---CCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC
Confidence            1   46788899999999 888999988887    588898876522   234567788999999999999999999999


Q ss_pred             CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458          272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (389)
Q Consensus       272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (389)
                      +.|++||+++++.+..+...    |..+|++++|+|||++|++|+.|++|+|||+..
T Consensus       291 ~~V~iwd~~~~~~~~~~~~g----H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          291 NSIALVKLKDLSMSKIFKQA----HSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             SCEEEEETTTTEEEEEETTS----SSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CEEEEEECCCCcEEEEecCc----ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            99999999999888776432    334699999999999999999999999999864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=1.4e-34  Score=237.05  Aligned_cols=304  Identities=16%  Similarity=0.182  Sum_probs=208.7

Q ss_pred             ccCCCcceeeeecccccCc----EEEEEEcCCCC---eEEEEecCCcEEEEeCCCC---CeeEEEeeCCCcEEEEEECCC
Q 016458           51 SFGPTDLVCCRTLQGHAGK----VYSLDWTSERN---RIVSASQDGRLIVWNALTS---QKTHAIKLPCAWVMTCAFSPT  120 (389)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~----v~~~~~~~~~~---~l~~~~~dg~v~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~  120 (389)
                      ...|..++.+.+|+.-.+.    +.++-|-..+-   .+++++. ..|++|+..++   +.+++...|..+|..+.+.|+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   97 (356)
T 2w18_A           19 SINPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPD   97 (356)
T ss_dssp             -----CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTT
T ss_pred             CcCcceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCc
Confidence            3466778888888877653    66777765443   6777776 58999999998   889999999999999999997


Q ss_pred             CcEEEEecC-C-CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee--CCCeEEEEeC-CCCeeEE
Q 016458          121 GQSVACGGL-D-SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS--GDQTCVLWDI-TTGLRTS  195 (389)
Q Consensus       121 ~~~l~~~~~-d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~  195 (389)
                      ...|++..- + ..-.++.+.-... ...........+|...|..+   +++ +++.+++  .|+.|++|++ .+++.+.
T Consensus        98 ~~~~~~~~~~~~~~~~v~sla~spd-~~~~~~~l~s~g~~~~v~~l---~~g-~lv~ss~~g~d~~V~~~~~s~dG~~~~  172 (356)
T 2w18_A           98 VYNLVCVALGNLEIREIRALFCSSD-DESEKQVLLKSGNIKAVLGL---TKR-RLVSSSGTLSDQQVEVMTFAEDGGGKE  172 (356)
T ss_dssp             CCSCEEEEECSSSEEEEEEECC-------CCEEEEEEEEEEEEEEE---TTT-EEEEEESSSTTCEEEEEEECTTSCEEE
T ss_pred             ccceeeeeeccccccceEEEEECCC-ccccccEEEeCCCeEEEEec---CCC-cEEEecccCCCCcEEEEEECCCCceee
Confidence            654443221 1 1111222221110 00111222224455555543   443 5555533  5999999999 4477766


Q ss_pred             EecCcccCCCCCCeeEEEeeC--CCCcEEEEeeCCCceEEEeCCCCCcceeEEeeecc---ceEEEEEecCCCEE-----
Q 016458          196 VFGGEFQSGHTADVLSVSISG--SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG---DVNTVKFFPDGNRF-----  265 (389)
Q Consensus       196 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l-----  265 (389)
                      .+     ..|...+..++|++  .++.+|++++.|++|+|||++++ +.+..+.+|..   .+.+++|+|+|.++     
T Consensus       173 s~-----~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~  246 (356)
T 2w18_A          173 NQ-----FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSH  246 (356)
T ss_dssp             EE-----EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC---CCCEEEEEEETTEEEEEEC-
T ss_pred             ee-----ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCcceeeeEEEEECCCCCEEEEecc
Confidence            66     56777777777776  46789999999999999999988 78888876543   57788999999886     


Q ss_pred             -------EEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCc
Q 016458          266 -------GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL  338 (389)
Q Consensus       266 -------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  338 (389)
                             ++|+.|++|++||..+++.+..+.......+...+.+..+  ++.++++|+.|++|+|||+.+++.+.++   
T Consensus       247 ~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL---  321 (356)
T 2w18_A          247 PCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALL---  321 (356)
T ss_dssp             -----------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEE---
T ss_pred             CCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEe---
Confidence                   5678899999999999987765532211122222333333  4789999999999999999999999999   


Q ss_pred             CCCCCCCee-EEEECCCCCeEEeeeCCCeeEEeecceec
Q 016458          339 QNSHEGRIT-CLGLSADGSALCTGSWDTNLKVNLGFWRV  376 (389)
Q Consensus       339 ~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i~~~~W~~  376 (389)
                       .+|...+. +++|+|||++|++|+.|++|+|    ||+
T Consensus       322 -~gH~~~vvs~vafSPDG~~LaSGS~D~TIkl----Wd~  355 (356)
T 2w18_A          322 -PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFV----YHY  355 (356)
T ss_dssp             -CCC--CCCCEEEECSSSSEEEEECTTSCEEE----EEE
T ss_pred             -cCCCCCeEEEEEECCCCCEEEEEECCCcEEE----ecC
Confidence             67876554 6899999999999999999999    986

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=7.7e-34  Score=247.61  Aligned_cols=307  Identities=15%  Similarity=0.125  Sum_probs=239.1

Q ss_pred             cCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeE-EEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc
Q 016458           44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ  122 (389)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~  122 (389)
                      ..+.....|+....++...+.+|.. +.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++
T Consensus         9 ~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~   86 (391)
T 1l0q_A            9 SESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGK   86 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSS
T ss_pred             CCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCC
Confidence            3455677888888888888888865 8999999999976 677789999999999999988887765 799999999999


Q ss_pred             EEEE-ecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc
Q 016458          123 SVAC-GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (389)
Q Consensus       123 ~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  201 (389)
                      +|++ +..++.|++||+.+++       ....+.. ...+.+++|+|++..++++++.++.|++||+.+++....+    
T Consensus        87 ~l~~~~~~~~~v~v~d~~~~~-------~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~----  154 (391)
T 1l0q_A           87 QVYVTNMASSTLSVIDTTSNT-------VAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV----  154 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTE-------EEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE----
T ss_pred             EEEEEECCCCEEEEEECCCCe-------EEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE----
Confidence            8754 5567999999998754       3344443 4568999999998555578888999999999999888877    


Q ss_pred             cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe---cCCeEEEEE
Q 016458          202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFD  278 (389)
Q Consensus       202 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d  278 (389)
                       .. ...+.+++|+|++..++++++.++.|++||+++. .....+. +...+.+++|+|++++|++++   .++.|++||
T Consensus       155 -~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d  230 (391)
T 1l0q_A          155 -SV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID  230 (391)
T ss_dssp             -EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred             -ec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence             23 3457999999944444477888999999999876 5555544 566789999999999999888   689999999


Q ss_pred             CCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEE-EEEecCCcEEEEEcccceEEEeecCcCCCCCCC------------
Q 016458          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR------------  345 (389)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~------------  345 (389)
                      +.+++.+..+....      .+.+++|+|+++++ ++++.|+.|++||+.+++....+.    .|..+            
T Consensus       231 ~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  300 (391)
T 1l0q_A          231 TGTNKITARIPVGP------DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA----VGKNPYASGQFIGSIPV  300 (391)
T ss_dssp             TTTTEEEEEEECCS------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSSEECCSSCEEECSS
T ss_pred             CCCCeEEEEEecCC------CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE----CCcCCCccceeeecccc
Confidence            99988777665532      27899999999987 566789999999999999888773    33222            


Q ss_pred             -----eeEEEECCCC--------CeEEeeeCCCeeEEeecceecccCccc
Q 016458          346 -----ITCLGLSADG--------SALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       346 -----v~~~~~~~~~--------~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                           +.........        ..+...+.|...++    |++.+|...
T Consensus       301 ~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~----W~~~~g~~~  346 (391)
T 1l0q_A          301 QPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWK----WDFGDGSSS  346 (391)
T ss_dssp             CCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEE----EECSSSCEE
T ss_pred             cccccccccccccccccccccceEEEEeCCCCceEEE----EECCCCccc
Confidence                 1112221111        24566667888899    999888643

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-36  Score=264.37  Aligned_cols=254  Identities=10%  Similarity=0.110  Sum_probs=204.6

Q ss_pred             cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCC-----cEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA-----WVMTCAFSPTGQSVACGGLDSVCSIFNLN  139 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~vw~~~  139 (389)
                      .|...|.+++|||+|.+||+++.||.|++||...  .+..+. |..     .+.+++|||+|++|++|+.||+|++|++.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            5688999999999999999999999999999544  555556 554     49999999999999999999999999998


Q ss_pred             CCCCCCCCCcceeee----cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE---EEecCcccCCCCCCeeEE
Q 016458          140 SPTDKDGNLPVSRML----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT---SVFGGEFQSGHTADVLSV  212 (389)
Q Consensus       140 ~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~~  212 (389)
                      .+............+    .+|...|.+++|+|++   +++++.|+.|++||+..+...   ..+.    ..|...|.++
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~----~~h~~~V~sv  232 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQ----NASRRKITDL  232 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEE----CCCSSCCCCE
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeec----ccccCcEEEE
Confidence            743111111123444    6788899999999976   889999999999999887732   3331    3677899999


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEE--ecCCCEEEEEecCCeEEEEECCCCceeeEeec
Q 016458          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF--FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ  290 (389)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  290 (389)
                      +|+   ++.+++++ ++.|++||+... .......+|...+..++|  +|++..|++++.||+ ++|...          
T Consensus       233 aFs---g~~LASa~-~~tIkLWd~~~~-~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d----------  296 (588)
T 2j04_A          233 KIV---DYKVVLTC-PGYVHKIDLKNY-SISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED----------  296 (588)
T ss_dssp             EEE---TTEEEEEC-SSEEEEEETTTT-EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------
T ss_pred             EEE---CCEEEEEe-CCeEEEEECCCC-eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------
Confidence            998   36788876 699999999866 332333379999999999  999999999999999 999977          


Q ss_pred             cCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458          291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  363 (389)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  363 (389)
                                 .++++|++..+++.  |+++++|+..... ...+    .+ ...|.+++|+|||+.+|+++.
T Consensus       297 -----------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~----~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          297 -----------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNY----ET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             -----------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSS----CC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             -----------cEEECCCceEEEEc--CCEEEEEECCCCc-eeee----cc-ceEEEEEEECCCCCEEEEEEe
Confidence                       14589999877764  8999999975544 3233    33 667999999999999998875

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=7e-34  Score=243.89  Aligned_cols=252  Identities=12%  Similarity=0.097  Sum_probs=185.9

Q ss_pred             EEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCc
Q 016458           93 VWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT  172 (389)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  172 (389)
                      +|++.+.+.+.....|...|.+++|+|++++|++|+.++ +++|++....         .....+...+..+.+.++++.
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~---------~~~~~~~~~~~~~~~~~~~~~   72 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA---------HIMSQEMRHLSKVRMLHRTNY   72 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE---------EEEEEECSCCCEEEECTTSSE
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc---------eeeeeecCCeEEEEEcCCCCE
Confidence            566677777777788999999999999999999998775 7899987632         222222235777888888755


Q ss_pred             EEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccc
Q 016458          173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD  252 (389)
Q Consensus       173 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  252 (389)
                      ++++++.|+.|++||..+++.+..+      .+...|.++.+++ +  .++++ .++.|++||+.+..+.+..+..   +
T Consensus        73 ~~~~~~~d~~v~iWd~~~~~~~~~~------~~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~  139 (355)
T 3vu4_A           73 VAFVTGVKEVVHIWDDVKKQDVSRI------KVDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITDDIR---F  139 (355)
T ss_dssp             EEEECSSTTEEEEEETTTTEEEEEE------ECSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---E
T ss_pred             EEEEECCccEEEEEECCCCcEEEEE------ECCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEEecc---C
Confidence            5578888999999999999988877      3566899999986 3  34444 4789999999876344444443   4


Q ss_pred             eEEEEEecCCCEEEE--EecCCeEEEEECCCCce----------------eeEeeccCCCCCCCCeeEEEeCCCCCEEEE
Q 016458          253 VNTVKFFPDGNRFGT--GSDDGTCRLFDIRTGHQ----------------LQVYYQQHGENEIPHVTSIAFSISGRLLFA  314 (389)
Q Consensus       253 i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  314 (389)
                      ...+++++  .++++  |+.||.|++||++++..                ...+.     .|...|++++|+|+|++|++
T Consensus       140 ~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~h~~~v~~~~~s~~g~~l~s  212 (355)
T 3vu4_A          140 GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-----AHTNPIKMVRLNRKSDMVAT  212 (355)
T ss_dssp             EEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEEC-----CCSSCEEEEEECTTSSEEEE
T ss_pred             CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-----ccCCceEEEEECCCCCEEEE
Confidence            44566777  56666  58999999999997651                33333     33446999999999999999


Q ss_pred             EecCCc-EEEEEcccceEEEeecCcCCC-CCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcc
Q 016458          315 GYSNGD-CYVWDTLLAKVVLNLGSLQNS-HEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       315 ~~~dg~-i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~  381 (389)
                      |+.||. |++||+.+++.+..+.   .+ |...|++++|+|++++|++++.|+.|++    |++.++..
T Consensus       213 ~s~d~~~v~iwd~~~~~~~~~~~---~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~i----w~~~~~~~  274 (355)
T 3vu4_A          213 CSQDGTIIRVFKTEDGVLVREFR---RGLDRADVVDMKWSTDGSKLAVVSDKWTLHV----FEIFNDQD  274 (355)
T ss_dssp             EETTCSEEEEEETTTCCEEEEEE---CTTCCSCEEEEEECTTSCEEEEEETTCEEEE----EESSCCSC
T ss_pred             EeCCCCEEEEEECCCCcEEEEEE---cCCCCCcEEEEEECCCCCEEEEEECCCEEEE----EEccCCCC
Confidence            999998 9999999999998883   24 9999999999999999999999999999    99987653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=244.38  Aligned_cols=261  Identities=15%  Similarity=0.189  Sum_probs=211.9

Q ss_pred             EeCCCCCeeEEEeeCCCcEEEEEECCC---CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCC
Q 016458           94 WNALTSQKTHAIKLPCAWVMTCAFSPT---GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE  170 (389)
Q Consensus        94 w~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  170 (389)
                      |+....+.+..+..|.+.|++++|+|+   |++|++|+.||.|++|++....     ......+.+|...|.+++|+|++
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~   98 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-----QTIPKAQQMHTGPVLDVCWSDDG   98 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS-----CEEEEEEEECSSCEEEEEECTTS
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-----ceeEEEeccccCCEEEEEECcCC
Confidence            455666777788899999999999999   6999999999999999998622     12346788899999999999987


Q ss_pred             CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEe--eCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee
Q 016458          171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI--SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG  248 (389)
Q Consensus       171 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  248 (389)
                       .+|++++.||.|++||+.++......      .|...|.+++|  +| ++.+|++++.||.|++||+++. +.+..+..
T Consensus        99 -~~l~s~~~dg~v~iwd~~~~~~~~~~------~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~  169 (368)
T 3mmy_A           99 -SKVFTASCDKTAKMWDLSSNQAIQIA------QHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSS-NPMMVLQL  169 (368)
T ss_dssp             -SEEEEEETTSEEEEEETTTTEEEEEE------ECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCS-SCSEEEEC
T ss_pred             -CEEEEEcCCCcEEEEEcCCCCceeec------cccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCC-cEEEEEec
Confidence             78999999999999999999877754      68899999999  76 7889999999999999999987 67777775


Q ss_pred             eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCE----EEEEecCCcEEEE
Q 016458          249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL----LFAGYSNGDCYVW  324 (389)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~~~~~dg~i~i~  324 (389)
                      +. .+.++.+.  ...+++++.++.+.+|+++............   ......++++.++...    +++++.||.|++|
T Consensus       170 ~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~  243 (368)
T 3mmy_A          170 PE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESP---LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH  243 (368)
T ss_dssp             SS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCS---CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred             CC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhcccc---ccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence            54 56666665  4589999999999999998765544433221   2223566666555443    9999999999999


Q ss_pred             Ecccc---eEEEeecCcCCCCCC------------CeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          325 DTLLA---KVVLNLGSLQNSHEG------------RITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       325 d~~~~---~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      |+...   .....+    ..|..            .|++++|+|++++|++++.||.|++    ||+.+++..
T Consensus       244 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i----wd~~~~~~~  308 (368)
T 3mmy_A          244 YINPPNPAKDNFTF----KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF----WDKDARTKL  308 (368)
T ss_dssp             ESSCSCHHHHSEEE----ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEE----EETTTTEEE
T ss_pred             ecCCCCccccceee----eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEE----EECCCCcEE
Confidence            99876   444455    45554            7999999999999999999999999    999988654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.3e-34  Score=251.93  Aligned_cols=248  Identities=13%  Similarity=0.055  Sum_probs=176.5

Q ss_pred             ccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeE-----EEeeCCCcEEEEEECC--------CCcEEEEecCCCc
Q 016458           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH-----AIKLPCAWVMTCAFSP--------TGQSVACGGLDSV  132 (389)
Q Consensus        66 h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~-----~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~  132 (389)
                      |...+....+++++.+|++++.|++|+|||..+++...     .+.+|.+.|.+++|+|        ++++|++|+.|++
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t  167 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT  167 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence            44444444455566789999999999999998886543     2457899999999997        7899999999999


Q ss_pred             EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC-------------
Q 016458          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG-------------  199 (389)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------  199 (389)
                      |+|||+..+.       .......|...+.+++|+|++..+|++++.|+.|++||+.+++.......             
T Consensus       168 v~~Wd~~~~~-------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~  240 (393)
T 4gq1_A          168 LIIWRLTDEG-------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN  240 (393)
T ss_dssp             EEEEEEETTE-------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE
T ss_pred             EEEEECCCCc-------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc
Confidence            9999997644       45667788899999999998767899999999999999998765433211             


Q ss_pred             -------cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEE----------------
Q 016458          200 -------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV----------------  256 (389)
Q Consensus       200 -------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~----------------  256 (389)
                             .....|...+.++.|++.++..+++++.|+.+++||+... +....+..|...+..+                
T Consensus       241 ~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (393)
T 4gq1_A          241 TLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-NDYNEISDSTMKLGPKNLLPNVQGISLFPSLL  319 (393)
T ss_dssp             SGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSS
T ss_pred             cccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC-CCCceEeeecCccccEEEccccccccccCcce
Confidence                   0113577889999998668999999999999999999876 4444444444333332                


Q ss_pred             --EEec--CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          257 --KFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       257 --~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                        .|+|  ++.++++|+.||.|++||+.++........+..     +|.+++|+|||++||+++.+| +.+|.+.
T Consensus       320 ~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~-----~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          320 GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM-----PIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS-----CEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC-----cEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence              3333  344677888999999999999988777655443     599999999999999998765 6666653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.8e-33  Score=245.15  Aligned_cols=249  Identities=14%  Similarity=0.092  Sum_probs=202.1

Q ss_pred             ecccccCcEEEEEEcCCCCeE-EEEecCCcEEEEeCC--CCCeeEEEe--eCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458           62 TLQGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNAL--TSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (389)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l-~~~~~dg~v~iw~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (389)
                      ...+|.+.|++++|+|++++| ++++.||.|++||+.  +++.+..+.  .+...|.+++|+|++++|++|+.+|.|++|
T Consensus        97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~  176 (450)
T 2vdu_B           97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI  176 (450)
T ss_dssp             ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence            456889999999999999996 899999999999999  888888876  566889999999999999999999999999


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeC---CCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD---EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  213 (389)
                      ++.......   .....+.+|...|.+++|+|+   + .+|++++.|+.|++||+.++.....+.    .+|...|.+++
T Consensus       177 ~~~~~~~~~---~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~----~~h~~~v~~~~  248 (450)
T 2vdu_B          177 DINSIPEEK---FTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIVDKWL----FGHKHFVSSIC  248 (450)
T ss_dssp             ETTSCCCSS---CCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCEEEEC----CCCSSCEEEEE
T ss_pred             ecCCccccc---ccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCceeeeee----cCCCCceEEEE
Confidence            998754211   023356789999999999998   6 799999999999999999988777642    57899999999


Q ss_pred             eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee-------------------------ccceEEEEEecCCCEEEEE
Q 016458          214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-------------------------EGDVNTVKFFPDGNRFGTG  268 (389)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------------------~~~i~~~~~~~~~~~l~~~  268 (389)
                      |+  ++.+|++++.|+.|++||++++ +.+..+..+                         ...|.+++|+|++++|+++
T Consensus       249 ~s--d~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~  325 (450)
T 2vdu_B          249 CG--KDYLLLSAGGDDKIFAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFF  325 (450)
T ss_dssp             EC--STTEEEEEESSSEEEEEETTTC-CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEE
T ss_pred             EC--CCCEEEEEeCCCeEEEEECCCC-cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEE
Confidence            99  7889999999999999999987 666666532                         3568999999999999999


Q ss_pred             e-cCCeEEEEEC--CCC---ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec------CCcEEEEEcc
Q 016458          269 S-DDGTCRLFDI--RTG---HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTL  327 (389)
Q Consensus       269 ~-~dg~i~i~d~--~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~  327 (389)
                      + .|+.|++|++  ..+   .....+..+      ..+.+++|+|++.++++++.      +..|.+|.+.
T Consensus       326 ~~~d~~i~iw~~~~~~~~~l~~~~~~~~~------~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          326 VEATKCIIILEMSEKQKGDLALKQIITFP------YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             ETTCSEEEEEEECSSSTTCEEEEEEEECS------SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             ECCCCeEEEEEeccCCCCceeeccEeccC------CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            9 8999999999  555   334444332      24999999996544444443      4558888765

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=8.3e-33  Score=237.08  Aligned_cols=279  Identities=17%  Similarity=0.240  Sum_probs=196.0

Q ss_pred             cCCCCCcccCCCcc----eeeeecccccCcEEEEEEcC--CCCeEEEEecCCcEEEEeCCCC---------CeeEEEeeC
Q 016458           44 SQGRAPVSFGPTDL----VCCRTLQGHAGKVYSLDWTS--ERNRIVSASQDGRLIVWNALTS---------QKTHAIKLP  108 (389)
Q Consensus        44 ~~~~~~~~~~~~~~----~~~~~l~~h~~~v~~~~~~~--~~~~l~~~~~dg~v~iw~~~~~---------~~~~~~~~~  108 (389)
                      ..+.....|+....    .....+.+|.++|++++|+|  ++++|++|+.||.|++||+.++         +....+..|
T Consensus        30 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  109 (351)
T 3f3f_A           30 SSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDS  109 (351)
T ss_dssp             ETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCC
T ss_pred             eCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeeccc
Confidence            34455666765533    67788899999999999999  6899999999999999999887         457777889


Q ss_pred             CCcEEEEEECCC--CcEEEEecCCCcEEEEeCCCCCCCCCCCcce-------eeecccccceEEEEEeeC--CCcEEEEe
Q 016458          109 CAWVMTCAFSPT--GQSVACGGLDSVCSIFNLNSPTDKDGNLPVS-------RMLSGHKGYVSCCQYVPD--EDTHLITS  177 (389)
Q Consensus       109 ~~~v~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~--~~~~l~~~  177 (389)
                      ...|.+++|+|+  +.+|++++.||.|++||+..+..... ....       .....|...+.++.|+|+  .+.+++++
T Consensus       110 ~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~  188 (351)
T 3f3f_A          110 KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS-WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS  188 (351)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC-CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE
T ss_pred             CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc-ccccccccccccccCCcccceeEEEeccCCCCCcEEEEe
Confidence            999999999999  99999999999999999987552211 1110       111267889999999997  34789999


Q ss_pred             eCCCeEEEEeCCCCee--EEEecCcccCCCCCCeeEEEeeCCCC----cEEEEeeCCCceEEEeCCCCCcceeEEeeecc
Q 016458          178 SGDQTCVLWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNS----RMFVSGSCDSTARLWDTRVASRAVRTFHGHEG  251 (389)
Q Consensus       178 ~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  251 (389)
                      +.++.+.+|+...+..  ...+     ..|...|.+++|+| ++    ++|++++.||.|++||++.. ........+..
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~i~~~~~~p-~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~  261 (351)
T 3f3f_A          189 ALEQAIIYQRGKDGKLHVAAKL-----PGHKSLIRSISWAP-SIGRWYQLIATGCKDGRIRIFKITEK-LSPLASEESLT  261 (351)
T ss_dssp             ETTEEEEEEECTTSCEEEEEEC-----CCCCSCEEEEEECC-CSSCSSEEEEEEETTSCEEEEEEEEC-C----------
T ss_pred             cCCCcEEEEccCCCceeeeeec-----CCCCcceeEEEECC-CCCCcceEEEEEcCCCeEEEEeCCCC-cCccccCCccc
Confidence            9999998888887765  4444     67899999999999 55    89999999999999999876 33223333333


Q ss_pred             ceEEEEEecCCCEEEEEe----cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          252 DVNTVKFFPDGNRFGTGS----DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      .......++....+..+.    ....+.+|+....+.+..+..+     ...|++++|+|++++|++++.||.|++||+.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          262 NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH-----NGEVWSVSWNLTGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             -----------------------------CCSEEEEEEEEECTT-----SSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             ceeccCCCcccccccccccccccceeeeecccccccEEEEEecc-----cccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence            344444444444444333    3344556665555555555433     3359999999999999999999999999999


Q ss_pred             cceEEEee
Q 016458          328 LAKVVLNL  335 (389)
Q Consensus       328 ~~~~~~~~  335 (389)
                      +++....+
T Consensus       337 ~~~~~~~~  344 (351)
T 3f3f_A          337 YSNEFKCM  344 (351)
T ss_dssp             TTSCEEEE
T ss_pred             cCcchhhe
Confidence            87655444

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=2.4e-31  Score=235.04  Aligned_cols=285  Identities=11%  Similarity=0.073  Sum_probs=223.5

Q ss_pred             ccCcEEEEE---EcCCCCeEEEEe--------------cCC--cEEEEeCCCC--CeeEEEeeCCCcEEEEEECCCCcEE
Q 016458           66 HAGKVYSLD---WTSERNRIVSAS--------------QDG--RLIVWNALTS--QKTHAIKLPCAWVMTCAFSPTGQSV  124 (389)
Q Consensus        66 h~~~v~~~~---~~~~~~~l~~~~--------------~dg--~v~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l  124 (389)
                      ....+..++   |+|+++.++..+              .++  .|..+|..++  +.+..+..+. .+.+++|+|++.++
T Consensus        59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~  137 (433)
T 3bws_A           59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLA  137 (433)
T ss_dssp             TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEE
T ss_pred             cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEE
Confidence            345678888   888877665432              233  4444444434  4445555443 46699999988888


Q ss_pred             EEecCCCcEEEEeCCCCCCCCCCCccee-----eecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC
Q 016458          125 ACGGLDSVCSIFNLNSPTDKDGNLPVSR-----MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG  199 (389)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  199 (389)
                      ++++.++.|++||+.++.       ...     .+.+|...|.+++|++++ .++++++.|+.|++||+.+++....+  
T Consensus       138 ~~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~~~~~~~--  207 (433)
T 3bws_A          138 IPLLEDEGMDVLDINSGQ-------TVRLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKTLAYKATV--  207 (433)
T ss_dssp             EEBTTSSSEEEEETTTCC-------EEEECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTCCEEEEE--
T ss_pred             EEeCCCCeEEEEECCCCe-------EeeecCcccccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCCceEEEEE--
Confidence            888889999999998754       222     345788899999998886 78999999999999999999888887  


Q ss_pred             cccCCCCCCeeEEEeeCCCCcEE-EEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe--------c
Q 016458          200 EFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--------D  270 (389)
Q Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~  270 (389)
                         ..+...+.+++|+| +++.+ ++++.++.|++||+++. ..+..+.. ...+.+++|+|+++++++++        .
T Consensus       208 ---~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~-~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  281 (433)
T 3bws_A          208 ---DLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTK-LEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESG  281 (433)
T ss_dssp             ---ECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTT-EEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred             ---cCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCC-cEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccC
Confidence               57788999999999 55555 56668999999999876 55555554 45589999999999999888        4


Q ss_pred             CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEE-EEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEE
Q 016458          271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  349 (389)
Q Consensus       271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  349 (389)
                      ||.|++||+.+++....+....      .+.+++|+|+++.+ ++++.++.|++||+.+++....+     .+...+.++
T Consensus       282 dg~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~-----~~~~~~~~~  350 (433)
T 3bws_A          282 GGRLGIYSMDKEKLIDTIGPPG------NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI-----PVFDKPNTI  350 (433)
T ss_dssp             CEEEEEEETTTTEEEEEEEEEE------CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE-----ECSSSEEEE
T ss_pred             CCeEEEEECCCCcEEeeccCCC------CcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe-----cCCCCCCeE
Confidence            8899999999887766653322      37899999999755 55688999999999999888777     356789999


Q ss_pred             EECCCCCeEEeeeC---------------CCeeEEeecceecccCccc
Q 016458          350 GLSADGSALCTGSW---------------DTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       350 ~~~~~~~~l~~~~~---------------dg~i~i~~~~W~~~~~~~~  382 (389)
                      +|+|+|++|++++.               ||.|++    ||+.+++..
T Consensus       351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~----~d~~~~~~~  394 (433)
T 3bws_A          351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYV----IDTTTDTVK  394 (433)
T ss_dssp             EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEE----EETTTTEEE
T ss_pred             EEcCCCCEEEEEecCCCccccccccccccceEEEE----EECCCCcEE
Confidence            99999998888876               579999    999988754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-32  Score=233.18  Aligned_cols=255  Identities=12%  Similarity=0.015  Sum_probs=197.0

Q ss_pred             ccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCC---------CCCeeEEEe-eCCCcE
Q 016458           43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL---------TSQKTHAIK-LPCAWV  112 (389)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~---------~~~~~~~~~-~~~~~v  112 (389)
                      ...+.....|+....+....+.  ...|.++.|+|+   +++++.|++|++|+..         +++.+..+. .|...|
T Consensus        54 g~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v  128 (343)
T 3lrv_A           54 RCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEI  128 (343)
T ss_dssp             EEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCE
T ss_pred             ECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCE
Confidence            3344555667776666666665  567888999998   9999999999999654         555454544 566789


Q ss_pred             EEEEECC--CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeee-cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          113 MTCAFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       113 ~~~~~~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                      .+++|+|  +++++++++.||.|++||+.++.       ..... ..|...+.+++|+|++ .+|++|+.||.|++||++
T Consensus       129 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-------~~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~  200 (343)
T 3lrv_A          129 IYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-------QYIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLS  200 (343)
T ss_dssp             EEEECCC---CCEEEEEETTCCEEEEESSSSC-------EEEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESS
T ss_pred             EEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-------EEEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECC
Confidence            9999999  99999999999999999998754       23333 3456689999999997 789999999999999999


Q ss_pred             CCeeE-EEecCcccCC-CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe---eeccceE--EEEEecCC
Q 016458          190 TGLRT-SVFGGEFQSG-HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVN--TVKFFPDG  262 (389)
Q Consensus       190 ~~~~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~i~--~~~~~~~~  262 (389)
                      ++... ..+     .. |...|.+++|+| ++.+|++++ ++.|++||++.. .....+.   .|...+.  +++|+|++
T Consensus       201 ~~~~~~~~~-----~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g  272 (343)
T 3lrv_A          201 SPDQASSRF-----PVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKD-VGTLAYPTYTIPEFKTGTVTYDIDDSG  272 (343)
T ss_dssp             CTTSCCEEC-----CCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSS-TTCBSSCCCBC-----CCEEEEECTTS
T ss_pred             CCCCCccEE-----eccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCC-CcceeecccccccccccceEEEECCCC
Confidence            99877 566     45 899999999999 888999999 559999999987 4433322   2444444  69999999


Q ss_pred             CEEEEEec-CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC---CCCEEEEEecCCcEEEEEcc
Q 016458          263 NRFGTGSD-DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI---SGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       263 ~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~  327 (389)
                      ++|++++. |+.|++|++.........         .++..++|++   +.+.+++++.||.+.++-..
T Consensus       273 ~~l~~~s~~d~~i~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          273 KNMIAYSNESNSLTIYKFDKKTKNWTK---------DEESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTTCSEEE---------EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             CEEEEecCCCCcEEEEEEcccccceEe---------cCceeEecCccccccceeEEEecCCceEEEEec
Confidence            99999998 999999999766544333         1377889998   88899999999999887543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=100.00  E-value=9.2e-31  Score=235.61  Aligned_cols=310  Identities=13%  Similarity=0.087  Sum_probs=237.8

Q ss_pred             CcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeC--CCCCeeEEEeeCCCcEEEEEECC----CCc
Q 016458           49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNA--LTSQKTHAIKLPCAWVMTCAFSP----TGQ  122 (389)
Q Consensus        49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~--~~~~~~~~~~~~~~~v~~~~~~~----~~~  122 (389)
                      ...|+....++..++..+.. +.+++|+|+|++|++++.|++|++||+  .+++.+..+.. ...+..++|+|    +|+
T Consensus       161 V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~  238 (543)
T 1nir_A          161 IALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDR  238 (543)
T ss_dssp             EEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTT
T ss_pred             EEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCC
Confidence            44577777788888874333 899999999999999999999999999  88888888874 45689999999    999


Q ss_pred             EEEEecC-CCcEEEEeCCCCCCCCCCCcceeeecc----------cc-cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC
Q 016458          123 SVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSG----------HK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDITT  190 (389)
Q Consensus       123 ~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  190 (389)
                      ++++++. ++.|.+||..+.+       +...+..          |. ..+..+.++|+++.++++...++.|.+||..+
T Consensus       239 ~l~v~~~~~~~v~v~D~~t~~-------~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~  311 (543)
T 1nir_A          239 YTIAGAYWPPQFAIMDGETLE-------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD  311 (543)
T ss_dssp             EEEEEEEESSEEEEEETTTCC-------EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred             EEEEEEccCCeEEEEeccccc-------cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence            9999885 8999999987644       3344332          22 37889999998878888888999999999988


Q ss_pred             CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEE-EeeCCCceEEEeCCCCCcceeEEee----eccceEEEEEecC-CCE
Q 016458          191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDSTARLWDTRVASRAVRTFHG----HEGDVNTVKFFPD-GNR  264 (389)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~  264 (389)
                      ........    ..+...+..+.|+| ++++++ ++..++.|.+||..++ +.+..+..    |.+....+ ++|+ +..
T Consensus       312 ~~~l~~~~----i~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~~ph~g~g~~~-~~p~~g~~  384 (543)
T 1nir_A          312 IDNLTVTS----IGAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRGANF-VHPKYGPV  384 (543)
T ss_dssp             SSSCEEEE----EECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSBCCTTCEEE-EETTTEEE
T ss_pred             CCcceeEE----eccCcCccCceECC-CCCEEEEEecCCCeEEEEECCCC-eEEEeeccCCCCCCCCCccc-CCCCCccE
Confidence            65443111    13456688899999 666554 5556899999999987 66666653    54433333 4676 666


Q ss_pred             EEEEe-cCCeEEEEECCC-------CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-------cCCcEEEEEcccc
Q 016458          265 FGTGS-DDGTCRLFDIRT-------GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-------SNGDCYVWDTLLA  329 (389)
Q Consensus       265 l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~  329 (389)
                      ++++. .|++|.+||+.+       .+.+..+..+..     .+..+.++|++++|++++       .++.|.+||+.++
T Consensus       385 ~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~-----~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~  459 (543)
T 1nir_A          385 WSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG-----GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL  459 (543)
T ss_dssp             EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-----CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred             EEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC-----CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence            66665 689999999988       777777765432     367899999999999987       2679999999988


Q ss_pred             eEE-EeecCc----CCCCCCCeeEEEECCCCCeEEeee-----CCCeeEEeecceecccCcccC
Q 016458          330 KVV-LNLGSL----QNSHEGRITCLGLSADGSALCTGS-----WDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       330 ~~~-~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      +.. ..+...    ...+...+..++|+|+|+.|+++.     .|+.|.|    ||..++++..
T Consensus       460 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v----~D~~t~~~~~  519 (543)
T 1nir_A          460 DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV----VDDKTLKLKA  519 (543)
T ss_dssp             TSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEE----EETTTTEEEE
T ss_pred             CCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEE----EECCCceEEE
Confidence            766 332100    024567899999999999998763     4799999    9999998764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=4.1e-30  Score=210.79  Aligned_cols=259  Identities=13%  Similarity=0.080  Sum_probs=178.9

Q ss_pred             CCcccCCCcc---eeeeecccccCcEEEEEEcCCCCeEE-EEecCC---cEEEEeCCCC----CeeEEEeeCCCcEEEEE
Q 016458           48 APVSFGPTDL---VCCRTLQGHAGKVYSLDWTSERNRIV-SASQDG---RLIVWNALTS----QKTHAIKLPCAWVMTCA  116 (389)
Q Consensus        48 ~~~~~~~~~~---~~~~~l~~h~~~v~~~~~~~~~~~l~-~~~~dg---~v~iw~~~~~----~~~~~~~~~~~~v~~~~  116 (389)
                      ....|+|...   ++.+++.+|..+|..+++.||..-|+ ++-.+=   .|+..-+...    .......++...|..+ 
T Consensus        64 ~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l-  142 (356)
T 2w18_A           64 VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL-  142 (356)
T ss_dssp             EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE-
T ss_pred             eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec-
Confidence            3456777766   89999999999999999999654322 222111   1111111111    1111112233334443 


Q ss_pred             ECCCCcEEEEec--CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEee---CCCcEEEEeeCCCeEEEEeCCCC
Q 016458          117 FSPTGQSVACGG--LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP---DEDTHLITSSGDQTCVLWDITTG  191 (389)
Q Consensus       117 ~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~  191 (389)
                        ++++++.+++  .|+.|++|++....      .....+..|...+..++|++   ++ .+|++++.|++|++||+.++
T Consensus       143 --~~g~lv~ss~~g~d~~V~~~~~s~dG------~~~~s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TG  213 (356)
T 2w18_A          143 --TKRRLVSSSGTLSDQQVEVMTFAEDG------GGKENQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTG  213 (356)
T ss_dssp             --TTTEEEEEESSSTTCEEEEEEECTTS------CEEEEEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTC
T ss_pred             --CCCcEEEecccCCCCcEEEEEECCCC------ceeeeeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCC
Confidence              5666666643  59999999995421      15566778888899999998   44 78999999999999999999


Q ss_pred             eeEEEecCcccCCCCCCeeEEEeeCCCCcEE------------EEeeCCCceEEEeCCCCCcceeEE-----eeeccceE
Q 016458          192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMF------------VSGSCDSTARLWDTRVASRAVRTF-----HGHEGDVN  254 (389)
Q Consensus       192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~i~  254 (389)
                      +.+..+...  ..+...+.+++|+| ++.++            ++|+.|++|++||..++ +.+..+     .+|...+.
T Consensus       214 k~l~tL~g~--~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg-k~l~v~~~~~p~Gh~~~~l  289 (356)
T 2w18_A          214 QLLKKMHID--DSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT-LSVGVMLYCLPPGQAGRFL  289 (356)
T ss_dssp             CEEEEEECC--C---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTT-EEEEEEEECCCTTCCCCEE
T ss_pred             cEEEEEcCC--CcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCC-EEEEEEEeeccCCCcceeE
Confidence            999988311  11234678889999 77765            56788999999999877 555444     25555544


Q ss_pred             EEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458          255 TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       255 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (389)
                      +..+  ++.++++++.|++|++||+.+++.+..+..+...    .+..++|+|||++|++|+.|++|+|||+
T Consensus       290 sg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~----vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          290 EGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ----HWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--C----CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCC----eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            4444  4789999999999999999999999888654332    2456899999999999999999999995

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=100.00  E-value=9.5e-31  Score=228.86  Aligned_cols=283  Identities=14%  Similarity=0.123  Sum_probs=217.1

Q ss_pred             cCcEEEEEEcCCCC-eEEEEe----cCC----cEEEEeC--CCCCee--EEEeeCCCcEEEEEECC--------------
Q 016458           67 AGKVYSLDWTSERN-RIVSAS----QDG----RLIVWNA--LTSQKT--HAIKLPCAWVMTCAFSP--------------  119 (389)
Q Consensus        67 ~~~v~~~~~~~~~~-~l~~~~----~dg----~v~iw~~--~~~~~~--~~~~~~~~~v~~~~~~~--------------  119 (389)
                      ...+...+|.+.|. ++++|+    .||    .|++||+  .+++.+  ..+..|...+..+++++              
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence            34678888988775 566776    467    8999999  898877  44777877777776654              


Q ss_pred             CCcEEEEecCC------CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC---eEEEEeCCC
Q 016458          120 TGQSVACGGLD------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ---TCVLWDITT  190 (389)
Q Consensus       120 ~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~  190 (389)
                      .+..++.++.+      +.|++||++..        ....+..|...+.+++|+|++ +.|++++.++   .|++||+.+
T Consensus       142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~--------~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~t  212 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQFPYELRVSDYDGY--------NQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLAN  212 (415)
T ss_dssp             TTCEEEEEEECSSSSCCEEEEEEETTSC--------SCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTT
T ss_pred             CCCEEEEEEecCCCCccceEEEEcCCCC--------CCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCC
Confidence            25556555543      79999999752        245667788999999999998 6788888775   999999999


Q ss_pred             CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEE-EeeCCCc--eEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEE
Q 016458          191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDST--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT  267 (389)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  267 (389)
                      ++....      ..+...+.+++|+| +++.|+ +++.++.  |++||+++. + ...+..|...+.+++|+|+|++|++
T Consensus       213 g~~~~l------~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~spdg~~l~~  283 (415)
T 2hqs_A          213 GAVRQV------ASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASG-Q-IRQVTDGRSNNTEPTWFPDSQNLAF  283 (415)
T ss_dssp             CCEEEE------ECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTC-C-EEECCCCSSCEEEEEECTTSSEEEE
T ss_pred             CcEEEe------ecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCC-C-EEeCcCCCCcccceEECCCCCEEEE
Confidence            887643      35677899999999 666555 6666655  999999865 3 3567778889999999999999988


Q ss_pred             Eec-CC--eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC---CcEEEEEcccceEEEeecCcCCC
Q 016458          268 GSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNS  341 (389)
Q Consensus       268 ~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~  341 (389)
                      ++. ++  .|++||+.+++... +...     ...+..++|+|+|++|++++.+   +.|++||+.+++.. .+    ..
T Consensus       284 ~s~~~g~~~i~~~d~~~~~~~~-l~~~-----~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l----~~  352 (415)
T 2hqs_A          284 TSDQAGRPQVYKVNINGGAPQR-ITWE-----GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL----SS  352 (415)
T ss_dssp             EECTTSSCEEEEEETTSSCCEE-CCCS-----SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-EC----CC
T ss_pred             EECCCCCcEEEEEECCCCCEEE-EecC-----CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Ee----cC
Confidence            886 44  68888988776432 2221     2248899999999999988764   58999999988764 34    34


Q ss_pred             CCCCeeEEEECCCCCeEEeeeCCC---eeEEeecceecccCcccC
Q 016458          342 HEGRITCLGLSADGSALCTGSWDT---NLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       342 ~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~~~~W~~~~~~~~~  383 (389)
                      +. .+.+++|+|||++|++++.++   .|.+    |++..+.+..
T Consensus       353 ~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~----~d~~g~~~~~  392 (415)
T 2hqs_A          353 TF-LDETPSLAPNGTMVIYSSSQGMGSVLNL----VSTDGRFKAR  392 (415)
T ss_dssp             SS-SCEEEEECTTSSEEEEEEEETTEEEEEE----EETTSCCEEE
T ss_pred             CC-CcCCeEEcCCCCEEEEEEcCCCccEEEE----EECCCCcEEE
Confidence            43 899999999999999998877   7888    9998765543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.98  E-value=2.1e-29  Score=226.80  Aligned_cols=289  Identities=12%  Similarity=0.066  Sum_probs=225.3

Q ss_pred             EEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeC--CCCCCCCCCCcce
Q 016458           74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL--NSPTDKDGNLPVS  151 (389)
Q Consensus        74 ~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~--~~~~~~~~~~~~~  151 (389)
                      +|+|++.++++++.|++|.+||..+++.+..+..+.. +..++|+|++++|++++.|+.|.+||+  .+.+       ..
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-------~~  215 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-------KV  215 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-------EE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-------EE
Confidence            4889998999999999999999999999999885544 889999999999999999999999999  4432       44


Q ss_pred             eeecccccceEEEEEee----CCCcEEEEee-CCCeEEEEeCCCCeeEEEecCcccC------CCCCCeeEEEeeCCCCc
Q 016458          152 RMLSGHKGYVSCCQYVP----DEDTHLITSS-GDQTCVLWDITTGLRTSVFGGEFQS------GHTADVLSVSISGSNSR  220 (389)
Q Consensus       152 ~~~~~~~~~v~~~~~~~----~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~  220 (389)
                      ..+. +...+..++|+|    ++ +++++++ .++.|.+||..+++.+..+......      .....+.++.++|.+..
T Consensus       216 ~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~  293 (543)
T 1nir_A          216 AEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE  293 (543)
T ss_dssp             EEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred             EEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE
Confidence            4555 345679999999    98 5666666 5899999999999988877431100      01237889999997777


Q ss_pred             EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458          221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (389)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (389)
                      ++++...++.|.+||.............+...+..+.|+|++++|++++ .++.|.+||+.+++....+..... .+...
T Consensus       294 ~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~-ph~g~  372 (543)
T 1nir_A          294 FIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT-PHPGR  372 (543)
T ss_dssp             EEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-BCCTT
T ss_pred             EEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC-CCCCC
Confidence            8888888999999999876332222234566788999999999876654 689999999999988877754221 12112


Q ss_pred             eeEEEeCCC-CCEEEEEe-cCCcEEEEEccc-------ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeee-------C
Q 016458          300 VTSIAFSIS-GRLLFAGY-SNGDCYVWDTLL-------AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-------W  363 (389)
Q Consensus       300 i~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~  363 (389)
                      ...+ ++|+ +..++++. .|+.|.+||+.+       ++.+.++    ..|.+.+..++++|+|++|++++       .
T Consensus       373 g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l----~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~  447 (543)
T 1nir_A          373 GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL----QGQGGGSLFIKTHPKSSHLYVDTTFNPDARI  447 (543)
T ss_dssp             CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE----ECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred             Cccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE----EcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence            2233 4677 55666664 579999999988       8888988    67888889999999999999987       3


Q ss_pred             CCeeEEeecceecccCccc
Q 016458          364 DTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       364 dg~i~i~~~~W~~~~~~~~  382 (389)
                      ++.|.|    ||+.+++..
T Consensus       448 ~~~v~v----~d~~~~~~~  462 (543)
T 1nir_A          448 SQSVAV----FDLKNLDAK  462 (543)
T ss_dssp             HTCEEE----EETTCTTSC
T ss_pred             CceEEE----EECCCCCCC
Confidence            789999    999988754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.98  E-value=7.7e-30  Score=223.09  Aligned_cols=279  Identities=14%  Similarity=0.058  Sum_probs=216.2

Q ss_pred             CCcccCC--Ccceee--eecccccCcEEEEEEcC--------------CCCeEEEEecC------CcEEEEeCCCCCeeE
Q 016458           48 APVSFGP--TDLVCC--RTLQGHAGKVYSLDWTS--------------ERNRIVSASQD------GRLIVWNALTSQKTH  103 (389)
Q Consensus        48 ~~~~~~~--~~~~~~--~~l~~h~~~v~~~~~~~--------------~~~~l~~~~~d------g~v~iw~~~~~~~~~  103 (389)
                      ....|+.  ...+++  ..+.+|...+..+++++              .+..++.++.+      +.|++||+. +....
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~  172 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQF  172 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCE
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCE
Confidence            3567777  666655  56889988888888775              15567666654      799999987 45567


Q ss_pred             EEeeCCCcEEEEEECCCCcEEEEecCCC---cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC
Q 016458          104 AIKLPCAWVMTCAFSPTGQSVACGGLDS---VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD  180 (389)
Q Consensus       104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  180 (389)
                      .+..|...+.+++|+|+|+.|++++.++   .|++||+.+++        ...+..|...+.+++|+|++..++++++.+
T Consensus       173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~--------~~~l~~~~~~~~~~~~spdg~~la~~~~~~  244 (415)
T 2hqs_A          173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--------VRQVASFPRHNGAPAFSPDGSKLAFALSKT  244 (415)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--------EEEEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc--------EEEeecCCCcccCEEEcCCCCEEEEEEecC
Confidence            7788888999999999999999998875   99999998754        234566788899999999985444477666


Q ss_pred             Ce--EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-CC--ceEEEeCCCCCcceeEEeeeccceEE
Q 016458          181 QT--CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DS--TARLWDTRVASRAVRTFHGHEGDVNT  255 (389)
Q Consensus       181 g~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~i~~  255 (389)
                      +.  |++||+.+++.. .+     ..+...+.+++|+| +++.|++++. ++  .|++||+... . ...+..+...+.+
T Consensus       245 g~~~i~~~d~~~~~~~-~l-----~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~-~-~~~l~~~~~~~~~  315 (415)
T 2hqs_A          245 GSLNLYVMDLASGQIR-QV-----TDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGG-A-PQRITWEGSQNQD  315 (415)
T ss_dssp             SSCEEEEEETTTCCEE-EC-----CCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSS-C-CEECCCSSSEEEE
T ss_pred             CCceEEEEECCCCCEE-eC-----cCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCC-C-EEEEecCCCcccC
Confidence            54  999999988764 33     46778899999999 7777776665 45  5777788765 2 3445556778899


Q ss_pred             EEEecCCCEEEEEecC---CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC---cEEEEEcccc
Q 016458          256 VKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLA  329 (389)
Q Consensus       256 ~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~  329 (389)
                      ++|+|+|++|++++.+   ..|++||+.+++... +....      .+.+++|+|+|++|++++.++   .|++||+. +
T Consensus       316 ~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g  387 (415)
T 2hqs_A          316 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSSTF------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-G  387 (415)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCSS------SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-S
T ss_pred             eEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCCC------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-C
Confidence            9999999999988864   589999999877632 32211      489999999999999888777   79999987 4


Q ss_pred             eEEEeecCcCCCCCCCeeEEEECCCCC
Q 016458          330 KVVLNLGSLQNSHEGRITCLGLSADGS  356 (389)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (389)
                      .....+    ..|.+.|.+++|+|...
T Consensus       388 ~~~~~l----~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          388 RFKARL----PATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             CCEEEC----CCSSSEEEEEEECCCCC
T ss_pred             CcEEEe----eCCCCCCcCCccccccc
Confidence            445566    68899999999999654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.97  E-value=6.2e-28  Score=205.41  Aligned_cols=283  Identities=14%  Similarity=0.146  Sum_probs=204.9

Q ss_pred             EEcCCCCe-EEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC-CCcEEEEeCCCCCCCCCCCcc-
Q 016458           74 DWTSERNR-IVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPV-  150 (389)
Q Consensus        74 ~~~~~~~~-l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~-  150 (389)
                      .|.+++++ +++++.++.|.+||..+++....+..+...+ .++|+|+++++++++. ++.|.+||+.++.       . 
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-------~~   75 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP-------PK   75 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS-------CE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc-------ee
Confidence            45565554 6778889999999999999988888777777 9999999997766655 8899999998754       3 


Q ss_pred             eeeecccccceEEEEEeeCCCcEEEEeeCC-C--eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458          151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGD-Q--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (389)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (389)
                      ...+..+..+..+++|+|++ ++++++..+ +  .|.+||+.+++....+.      ......+++|+|++..++++...
T Consensus        76 ~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~------~~~~~~~~~~spdg~~l~~~~~~  148 (331)
T 3u4y_A           76 VVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFISTIP------IPYDAVGIAISPNGNGLILIDRS  148 (331)
T ss_dssp             EEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEEEE------CCTTEEEEEECTTSSCEEEEEET
T ss_pred             EEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEEEE------CCCCccceEECCCCCEEEEEecC
Confidence            44555555665559999998 566655555 3  99999999998887762      33456899999944446666666


Q ss_pred             CCc-eEEEeCCCCCcce---eEEeeeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCce---eeEeeccCCCCCCCC
Q 016458          228 DST-ARLWDTRVASRAV---RTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQ---LQVYYQQHGENEIPH  299 (389)
Q Consensus       228 dg~-i~i~d~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~  299 (389)
                      ++. |.+|++.......   .........+..++|+|++++++++ ..++.|.+||+.+++.   +..+...      ..
T Consensus       149 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~------~~  222 (331)
T 3u4y_A          149 SANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN------NL  222 (331)
T ss_dssp             TTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS------SC
T ss_pred             CCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC------CC
Confidence            688 9999988643221   1112334568999999999966555 4689999999998887   5555432      23


Q ss_pred             eeEEEeCCCCCEEEEEe-cCCcEEEEEcccceE--EEeecCcCCCCCC---CeeEEEECCCCCeEEeeeC-CCeeEEeec
Q 016458          300 VTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKV--VLNLGSLQNSHEG---RITCLGLSADGSALCTGSW-DTNLKVNLG  372 (389)
Q Consensus       300 i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~-dg~i~i~~~  372 (389)
                      +..++|+|+|+++++++ .++.|.+||+.+++.  +..+......+..   ....++|+|||++|++++. ++.|.+   
T Consensus       223 ~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v---  299 (331)
T 3u4y_A          223 PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKV---  299 (331)
T ss_dssp             CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEE---
T ss_pred             CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEE---
Confidence            68899999999777665 467899999998877  3333211011122   2356899999998866555 569999   


Q ss_pred             ceecccCcc
Q 016458          373 FWRVQEGAL  381 (389)
Q Consensus       373 ~W~~~~~~~  381 (389)
                       |++....+
T Consensus       300 -~d~~~~~~  307 (331)
T 3u4y_A          300 -FTISGKVV  307 (331)
T ss_dssp             -EETTSCEE
T ss_pred             -EEecCCcc
Confidence             99987654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.97  E-value=1.5e-28  Score=231.61  Aligned_cols=286  Identities=10%  Similarity=0.099  Sum_probs=215.2

Q ss_pred             cCcEEEEEEcCCCCeEEEEec-CC-----cEEEEeCCCCCeeEEEeeCCC------------------------cEEEEE
Q 016458           67 AGKVYSLDWTSERNRIVSASQ-DG-----RLIVWNALTSQKTHAIKLPCA------------------------WVMTCA  116 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~-dg-----~v~iw~~~~~~~~~~~~~~~~------------------------~v~~~~  116 (389)
                      ...|.+++|+|||++|++++. |+     .|++||+.+++....+..+..                        .+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456999999999999999998 88     899999999987776655432                        378899


Q ss_pred             ECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEE
Q 016458          117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV  196 (389)
Q Consensus       117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  196 (389)
                      |+|+|++|++++. +.|++||+.++..     +....+..|...+..++|+|+| +.|+.++ ++.|++||+.++.....
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~-----~~~~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGK-----AAVRQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCST-----TSCCBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCc-----ceEEEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEEEe
Confidence            9999999999886 9999999987510     0123455677889999999998 5677666 46999999998876654


Q ss_pred             ecCcccCCCCC----------------CeeEEEeeCCCCcEEEEeeCCC-------------------------------
Q 016458          197 FGGEFQSGHTA----------------DVLSVSISGSNSRMFVSGSCDS-------------------------------  229 (389)
Q Consensus       197 ~~~~~~~~~~~----------------~v~~~~~~~~~~~~l~~~~~dg-------------------------------  229 (389)
                      .     ..+..                .+.++.|+| +++.|++++.|+                               
T Consensus       188 ~-----~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          188 T-----ADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             C-----CCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             c-----cCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            4     22222                147899999 777777776655                               


Q ss_pred             --ceEEEeCCC-CCcceeEEe--eeccceEEEEEecCCCEEEEEec-----CCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458          230 --TARLWDTRV-ASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSD-----DGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (389)
Q Consensus       230 --~i~i~d~~~-~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (389)
                        .|.+||+.+ . +......  .|...+..++| |||++|++++.     +..|++||+.+++....+..... .....
T Consensus       262 ~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~  338 (741)
T 2ecf_A          262 QVKLGVISPAEQA-QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP-TWVPL  338 (741)
T ss_dssp             EEEEEEECSSTTC-CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS-SCCCC
T ss_pred             eeEEEEEECCCCC-ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC-CcCCc
Confidence              788999987 5 3332222  46778999999 99999987764     57899999999887666544321 11112


Q ss_pred             eeEEEeCCCCCEEEEEecCCcEEEEEcc-cceEEEeecCcCCCCCCCeeEE-EECCCCCeEEee-eCCC--eeEEeecce
Q 016458          300 VTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITCL-GLSADGSALCTG-SWDT--NLKVNLGFW  374 (389)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~-~~dg--~i~i~~~~W  374 (389)
                      +..++|+|||+++++++.+|.++||.+. .+. ...+    ..|...|..+ .|+|+|+.|+.. +.++  .++|    |
T Consensus       339 ~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l----~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l----~  409 (741)
T 2ecf_A          339 HNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL----THGNWSVDELLAVDEKAGLAYFRAGIESARESQI----Y  409 (741)
T ss_dssp             CSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES----CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEE----E
T ss_pred             CCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee----eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEE----E
Confidence            4678999999999999999988888765 344 5566    5677788887 599999877654 4455  8899    9


Q ss_pred             eccc
Q 016458          375 RVQE  378 (389)
Q Consensus       375 ~~~~  378 (389)
                      ++..
T Consensus       410 ~~~~  413 (741)
T 2ecf_A          410 AVPL  413 (741)
T ss_dssp             EEET
T ss_pred             EEEc
Confidence            9864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.97  E-value=3.7e-27  Score=202.41  Aligned_cols=274  Identities=14%  Similarity=0.100  Sum_probs=213.3

Q ss_pred             ccCcEEEEEEcCCCCeEEEEec-------CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE-EecCCCcEEEEe
Q 016458           66 HAGKVYSLDWTSERNRIVSASQ-------DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFN  137 (389)
Q Consensus        66 h~~~v~~~~~~~~~~~l~~~~~-------dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~  137 (389)
                      ....+..++|+|+++++++++.       ++.|.+||..+++.+..+.... .+..++|+|++++++ +...++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-KPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-CCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-CcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            4456889999999998888774       5689999999999888887654 478899999999655 455579999999


Q ss_pred             CCCCCCCCCCCcceeeeccccc---------ceEEEEEeeCCCcEEEEe-eCCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458          138 LNSPTDKDGNLPVSRMLSGHKG---------YVSCCQYVPDEDTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (389)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  207 (389)
                      ..+++       ....+..+..         .+.++.|+|++..+++++ +.++.|.+||+.+++....+     ..+..
T Consensus       118 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~-----~~~~~  185 (353)
T 3vgz_A          118 AKTGE-------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI-----QNTGK  185 (353)
T ss_dssp             TTTCC-------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE-----CCCCT
T ss_pred             CCCCe-------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe-----cCCCC
Confidence            98754       3333433321         268899999985444444 35889999999999988887     33455


Q ss_pred             CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee----eccceEEEEEecCCCEEEEEec-CCeEEEEECCCC
Q 016458          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG----HEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTG  282 (389)
Q Consensus       208 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~  282 (389)
                      .+..++|+| +++.+++++.++.|.+||..+. +....+..    +...+..++|+|+++++++++. ++.|.+||+.++
T Consensus       186 ~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  263 (353)
T 3vgz_A          186 MSTGLALDS-EGKRLYTTNADGELITIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG  263 (353)
T ss_dssp             TCCCCEEET-TTTEEEEECTTSEEEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred             ccceEEECC-CCCEEEEEcCCCeEEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            688899999 7788888888999999999877 55555543    4456788999999998777665 599999999999


Q ss_pred             ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  361 (389)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  361 (389)
                      +....+....       ...++|+|+|+++++++ .++.|.+||..+++.+..+.    . ...+.+++|+|+|++|+++
T Consensus       264 ~~~~~~~~~~-------~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~----~-~~~~~~~~~s~dg~~l~v~  331 (353)
T 3vgz_A          264 NILAKVAAPE-------SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD----T-PTHPNSLALSADGKTLYVS  331 (353)
T ss_dssp             CEEEEEECSS-------CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE----C-CSEEEEEEECTTSCEEEEE
T ss_pred             cEEEEEEcCC-------CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe----c-CCCCCeEEEcCCCCEEEEE
Confidence            8877766432       25689999999776665 68999999999999888773    2 3468999999999988777


Q ss_pred             eCCCe
Q 016458          362 SWDTN  366 (389)
Q Consensus       362 ~~dg~  366 (389)
                      ..++.
T Consensus       332 ~~~~~  336 (353)
T 3vgz_A          332 VKQKS  336 (353)
T ss_dssp             EECCC
T ss_pred             Ecccc
Confidence            76643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.97  E-value=1.9e-27  Score=203.29  Aligned_cols=282  Identities=11%  Similarity=0.093  Sum_probs=191.3

Q ss_pred             eEEEEecCCcEEEEeCCC-CCe-eEEEeeCCCcEEEEEECCCCcEEEEecCC-CcEEEEeCCCCCCCCCCCcceeeeccc
Q 016458           81 RIVSASQDGRLIVWNALT-SQK-THAIKLPCAWVMTCAFSPTGQSVACGGLD-SVCSIFNLNSPTDKDGNLPVSRMLSGH  157 (389)
Q Consensus        81 ~l~~~~~dg~v~iw~~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~  157 (389)
                      .+++++.|+.|++|++.. +.. ......+...+.+++|+|++++|++++.+ +.|.+|++....   ........+..+
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~   83 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD---GALTFAAESALP   83 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT---CCEEEEEEEECS
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC---CceeeccccccC
Confidence            344447899999999853 322 12223456678999999999988888776 999999997311   122223333333


Q ss_pred             ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC---CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCCceEE
Q 016458          158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT---GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARL  233 (389)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i  233 (389)
                      . .+..++|+|++..+++++..++.|.+||+..   ......+      .....+.+++|+| +++.+++++ .++.|.+
T Consensus        84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~  155 (343)
T 1ri6_A           84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV------EGLDGCHSANISP-DNRTLWVPALKQDRICL  155 (343)
T ss_dssp             S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE------CCCTTBCCCEECT-TSSEEEEEEGGGTEEEE
T ss_pred             C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc------cCCCCceEEEECC-CCCEEEEecCCCCEEEE
Confidence            3 7889999999854445555689999999943   3333333      2334588999999 666666665 8999999


Q ss_pred             EeCCCCCccee----EEee-eccceEEEEEecCCCEEEEEe-cCCeEEEEECCC--Cce--eeEeecc-CCCCCCCCeeE
Q 016458          234 WDTRVASRAVR----TFHG-HEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRT--GHQ--LQVYYQQ-HGENEIPHVTS  302 (389)
Q Consensus       234 ~d~~~~~~~~~----~~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~--~~~~~~~-~~~~~~~~i~~  302 (389)
                      ||+........    .... ....+..++|+|+++++++++ .++.|.+|++..  +..  ....... ........+..
T Consensus       156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  235 (343)
T 1ri6_A          156 FTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD  235 (343)
T ss_dssp             EEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred             EEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence            99986323322    2222 234688999999999776554 889999999954  332  1122111 11111234678


Q ss_pred             EEeCCCCCEEEEEe-cCCcEEEEEcc----cceEEEeecCcCCCCCCCeeEEEECCCCCeEEeee-CCCeeEEeecceec
Q 016458          303 IAFSISGRLLFAGY-SNGDCYVWDTL----LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKVNLGFWRV  376 (389)
Q Consensus       303 ~~~~~~~~~l~~~~-~dg~i~i~d~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~W~~  376 (389)
                      ++|+|+|++|+++. .++.|.+||+.    ..+.+..+    ..+.. +.+++|+|+|++|++++ .++.+.+    |++
T Consensus       236 i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~----~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v----~~~  306 (343)
T 1ri6_A          236 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ----PTETQ-PRGFNVDHSGKYLIAAGQKSHHISV----YEI  306 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE----ECSSS-CCCEEECTTSSEEEEECTTTCEEEE----EEE
T ss_pred             eEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee----cCCCc-cceEEECCCCCEEEEecCCCCeEEE----EEE
Confidence            99999999887554 78999999998    23444444    23333 88999999999888887 6899999    955


Q ss_pred             c--cCccc
Q 016458          377 Q--EGALS  382 (389)
Q Consensus       377 ~--~~~~~  382 (389)
                      +  +|++.
T Consensus       307 d~~~g~~~  314 (343)
T 1ri6_A          307 VGEQGLLH  314 (343)
T ss_dssp             ETTTTEEE
T ss_pred             cCCCceee
Confidence            4  66543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=6e-28  Score=201.94  Aligned_cols=257  Identities=15%  Similarity=0.124  Sum_probs=190.0

Q ss_pred             EEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC-CCCCCCCCcceeeeccc-ccce
Q 016458           84 SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS-PTDKDGNLPVSRMLSGH-KGYV  161 (389)
Q Consensus        84 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~-~~~v  161 (389)
                      .++.|+.|++||+.+++.. .+..|...+.+++|+|++++|++++ ++.|.+||+.+ +.       .......+ ...+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-------~~~~~~~~~~~~~   87 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-------PEKVDTGFATICN   87 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-------CEECCCTTCCCBC
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-------ceEeccccccccc
Confidence            4567899999999887766 4455678899999999999999986 78999999987 54       23333344 4678


Q ss_pred             EEEEEeeCCCcEEEEee--CC--CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE-EEeeCCCceEEEeC
Q 016458          162 SCCQYVPDEDTHLITSS--GD--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDT  236 (389)
Q Consensus       162 ~~~~~~~~~~~~l~~~~--~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~  236 (389)
                      .+++|+|++ +++++++  .+  ..|..+++.++.. ..+      .....+..++|+| +++.+ +++..++.+.+|++
T Consensus        88 ~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~------~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~  158 (297)
T 2ojh_A           88 NDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGGTP-RLM------TKNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSM  158 (297)
T ss_dssp             SCCEECTTS-SEEEEEECTTTSSCEEEEEETTCCCC-EEC------CSSSSEEEEEECT-TSSEEEEEEEETTEEEEEEE
T ss_pred             cceEECCCC-CEEEEEEeCCCCcceEEEEECCCCce-EEe------ecCCCccceEECC-CCCEEEEEECCCCceEEEEE
Confidence            899999998 6777777  33  4455555555543 222      2233488999999 55555 47888999999997


Q ss_pred             CCCCcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECC-CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEE
Q 016458          237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA  314 (389)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  314 (389)
                      +........+..+...+.+++|+|++++|++++ .++.+.+|++. .+.....+....     ..+..++|+|+|++|++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~  233 (297)
T 2ojh_A          159 DIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA-----YGDWFPHPSPSGDKVVF  233 (297)
T ss_dssp             ETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS-----EEEEEEEECTTSSEEEE
T ss_pred             ECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC-----cccCCeEECCCCCEEEE
Confidence            544345566677888899999999999888766 58999999886 444444443322     24889999999999988


Q ss_pred             EecC-----------CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458          315 GYSN-----------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (389)
Q Consensus       315 ~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  365 (389)
                      ++.+           +.|++||+.+++.......  ..|...+.+++|+|++++|++++.|.
T Consensus       234 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          234 VSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL--FGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE--EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEcCCCCCcccccCceEEEEEecCCCCceeeecc--CCCCcccccceECCCCCEEEEEEecc
Confidence            8765           4699999988765332210  36778899999999999999887764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.96  E-value=1.1e-26  Score=198.05  Aligned_cols=269  Identities=13%  Similarity=0.069  Sum_probs=202.1

Q ss_pred             CeEEEEecCCcEEEEeCCCCCeeEEEeeCCC--cEEEEEECCCCcEE-EEecCCCcEEEEeCCCCCCCCCCCcceeeec-
Q 016458           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCA--WVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-  155 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-  155 (389)
                      ++|++++.++.|.+||..+++.+..+.....  .+..++|+|+++.+ +++..++.|.+||+.+++       ....+. 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-------~~~~~~~   74 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-------TLGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-------EEEEEEC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-------eEeeEEc
Confidence            4789999999999999999988888775442  47899999999766 455668899999998754       232222 


Q ss_pred             c----cccceEEEEEeeCCCcEEEEee------------CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458          156 G----HKGYVSCCQYVPDEDTHLITSS------------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (389)
Q Consensus       156 ~----~~~~v~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (389)
                      .    |...+..++|+|++ +.++++.            .++.|.+||+.+++....+.      ....+.+++|+| ++
T Consensus        75 ~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~------~~~~~~~~~~s~-dg  146 (337)
T 1pby_B           75 STPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE------APRQITMLAWAR-DG  146 (337)
T ss_dssp             CBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE------CCSSCCCEEECT-TS
T ss_pred             CCcccccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCCCcEEEEEe------CCCCcceeEECC-CC
Confidence            1    22357789999998 4566664            57999999999988877762      234578899999 66


Q ss_pred             cEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCC------------------------eEE
Q 016458          220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG------------------------TCR  275 (389)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------------------~i~  275 (389)
                      ++++++  ++.|.+||+.+. +....+..+.. ...+.|+|++..++..+.++                        .|.
T Consensus       147 ~~l~~~--~~~i~~~d~~~~-~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  222 (337)
T 1pby_B          147 SKLYGL--GRDLHVMDPEAG-TLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL  222 (337)
T ss_dssp             SCEEEE--SSSEEEEETTTT-EEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred             CEEEEe--CCeEEEEECCCC-cEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceE
Confidence            666666  689999999876 55555543331 11337899988776554332                        468


Q ss_pred             EEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458          276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (389)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (389)
                      +||+.+++.. ......   ....+..++|+|+|++++++  ++.|.+||+.+++....+.     ....+.+++|+|+|
T Consensus       223 ~~d~~~~~~~-~~~~~~---~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~s~dg  291 (337)
T 1pby_B          223 TMDLETGEMA-MREVRI---MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-----LPHSYYSVNVSTDG  291 (337)
T ss_dssp             EEETTTCCEE-EEEEEE---CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-----CSSCCCEEEECTTS
T ss_pred             EEeCCCCCce-EeecCC---CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec-----CCCceeeEEECCCC
Confidence            9999988765 322211   11247889999999999988  6899999999998887763     23467899999999


Q ss_pred             CeEEeeeCCCeeEEeecceecccCccc
Q 016458          356 SALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       356 ~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      ++|++++.++.|.+    ||+.+++..
T Consensus       292 ~~l~~~~~~~~i~v----~d~~~~~~~  314 (337)
T 1pby_B          292 STVWLGGALGDLAA----YDAETLEKK  314 (337)
T ss_dssp             CEEEEESBSSEEEE----EETTTCCEE
T ss_pred             CEEEEEcCCCcEEE----EECcCCcEE
Confidence            99999999999999    999988754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=4.3e-27  Score=221.74  Aligned_cols=302  Identities=11%  Similarity=0.110  Sum_probs=215.3

Q ss_pred             CCcccCCCcceeeeecccccC------------------------cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--e
Q 016458           48 APVSFGPTDLVCCRTLQGHAG------------------------KVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--K  101 (389)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~h~~------------------------~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~  101 (389)
                      ....|+.........+..|..                        .|.+++|||||++|++++. +.|++||+.++.  .
T Consensus        65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~  143 (741)
T 2ecf_A           65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAA  143 (741)
T ss_dssp             EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTS
T ss_pred             EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcce
Confidence            344566666665555555543                        3899999999999999886 899999998873  4


Q ss_pred             eEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccccc----------------ceEEEE
Q 016458          102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG----------------YVSCCQ  165 (389)
Q Consensus       102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~----------------~v~~~~  165 (389)
                      ...+..+...+..++|+|+|++|++++ ++.|++||+.++.       .......+..                .+..+.
T Consensus       144 ~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~-------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~  215 (741)
T 2ecf_A          144 VRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR-------QMQLTADGSTTIGNGIAEFVADEEMDRHTGYW  215 (741)
T ss_dssp             CCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE-------EEECCCCCCSSEEESCCCHHHHHHSCCCCSEE
T ss_pred             EEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC-------EEEeccCCccceeccccceeeeeccccccceE
Confidence            445666777899999999999999887 4689999998743       1222222221                247799


Q ss_pred             EeeCCCcEEEEeeCCC---------------------------------eEEEEeCCC-CeeEEEecCcccCCCCCCeeE
Q 016458          166 YVPDEDTHLITSSGDQ---------------------------------TCVLWDITT-GLRTSVFGGEFQSGHTADVLS  211 (389)
Q Consensus       166 ~~~~~~~~l~~~~~dg---------------------------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~  211 (389)
                      |+|+| +.|++++.|+                                 .|.+||+.+ ++.......   ..+...+..
T Consensus       216 ~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~  291 (741)
T 2ecf_A          216 WAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLG---KEQDIYLAR  291 (741)
T ss_dssp             ECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCC---SCSSEEEEE
T ss_pred             ECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCC---CCcceEEEE
Confidence            99998 5677766554                                 889999988 776544311   246778999


Q ss_pred             EEeeCCCCcEEEEeeC-----CCceEEEeCCCCCcceeEEeeecc----ceEEEEEecCCCEEEEEecCCeEEEEECC-C
Q 016458          212 VSISGSNSRMFVSGSC-----DSTARLWDTRVASRAVRTFHGHEG----DVNTVKFFPDGNRFGTGSDDGTCRLFDIR-T  281 (389)
Q Consensus       212 ~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~  281 (389)
                      ++| | +++.|++++.     +..|++||+.++ .....+..+..    .+..++|+|||+++++++.||.+.+|.+. .
T Consensus       292 ~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~  368 (741)
T 2ecf_A          292 VNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK  368 (741)
T ss_dssp             EEE-E-ETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS
T ss_pred             EEe-C-CCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC
Confidence            999 9 7777776543     568999999877 55555555543    45689999999999999999987887765 3


Q ss_pred             CceeeEeeccCCCCCCCCeeEE-EeCCCCCEEEE-EecCC--cEEEEEccc-ceEEEeecCcCCCCCCCeeEEEECCCCC
Q 016458          282 GHQLQVYYQQHGENEIPHVTSI-AFSISGRLLFA-GYSNG--DCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGS  356 (389)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~-~~~dg--~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (389)
                      +. ...+....     ..+..+ .|+|+|+.|+. ++.++  .+++|++.. +.....+    .. ...+..++|+|||+
T Consensus       369 ~~-~~~l~~~~-----~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l----~~-~~~~~~~~~spdg~  437 (741)
T 2ecf_A          369 GK-AAALTHGN-----WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRL----SK-APGMHSASFARNAS  437 (741)
T ss_dssp             SC-EEESCCSS-----SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEEC----CC-SCSEEEEEECTTSS
T ss_pred             CC-eeeeeecc-----eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeec----cc-CCCceEEEECCCCC
Confidence            33 44443322     237776 59999997765 44455  899999864 5445555    23 56788999999999


Q ss_pred             eEEeeeCC----CeeEEeecceecccCc
Q 016458          357 ALCTGSWD----TNLKVNLGFWRVQEGA  380 (389)
Q Consensus       357 ~l~~~~~d----g~i~i~~~~W~~~~~~  380 (389)
                      +|+....+    +.+.+    |+...+.
T Consensus       438 ~l~~~~~~~~~p~~~~l----~~~~~~~  461 (741)
T 2ecf_A          438 VYVDSWSNNSTPPQIEL----FRANGEK  461 (741)
T ss_dssp             EEEEEEEETTEEEEEEE----EETTSCE
T ss_pred             EEEEEecCCCCCCeEEE----EEcCCCe
Confidence            98876554    45677    8876554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.96  E-value=1e-26  Score=217.93  Aligned_cols=298  Identities=18%  Similarity=0.179  Sum_probs=209.4

Q ss_pred             ccCCCcceee-eeccccc-----------------CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcE
Q 016458           51 SFGPTDLVCC-RTLQGHA-----------------GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWV  112 (389)
Q Consensus        51 ~~~~~~~~~~-~~l~~h~-----------------~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v  112 (389)
                      .|++...+.. +.+..|.                 ..|.+++|+|| +.++.+ .++.|++||+.+++... +..+...+
T Consensus        47 ~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~  123 (706)
T 2z3z_A           47 VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY-LFDTNEET  123 (706)
T ss_dssp             EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE-EECCTTCC
T ss_pred             EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE-ccCCcccc
Confidence            6777666553 4444443                 56999999999 666655 45899999998876544 44456678


Q ss_pred             EEEEECCCCcEEEEecCCCcEEEEeCCC-----CCCCCCCCcceeeeccccc--------------ceEEEEEeeCCCcE
Q 016458          113 MTCAFSPTGQSVACGGLDSVCSIFNLNS-----PTDKDGNLPVSRMLSGHKG--------------YVSCCQYVPDEDTH  173 (389)
Q Consensus       113 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~-----~~~~~~~~~~~~~~~~~~~--------------~v~~~~~~~~~~~~  173 (389)
                      .+++|+|+|+.|+++ .++.|++|++.+     +.       .......+..              .+.++.|+|+| ++
T Consensus       124 ~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~-------~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~  194 (706)
T 2z3z_A          124 ASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR-------AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SC  194 (706)
T ss_dssp             TTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC-------CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SE
T ss_pred             cCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC-------cEEeccCCCCCeEcccchhhhhcCCCceEEECCCC-CE
Confidence            899999999999985 679999999986     43       1221222222              25789999998 56


Q ss_pred             EEEee---------------------------------CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458          174 LITSS---------------------------------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (389)
Q Consensus       174 l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (389)
                      |++++                                 .+..|.+||+.++........   ..+...+.+++|+| +++
T Consensus       195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~~sp-dg~  270 (706)
T 2z3z_A          195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG---EPKEKFLTNLSWSP-DEN  270 (706)
T ss_dssp             EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC---SCTTCEEEEEEECT-TSS
T ss_pred             EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC---CCCceeEeeEEEEC-CCC
Confidence            77766                                 457899999998876544311   24567799999999 788


Q ss_pred             EEEEeeCCC-----ceEEEeCCCCCcceeEEe-e-ecc---ceEEEEEec--CCCEEEEEecCCeEEEEECC-CCceeeE
Q 016458          221 MFVSGSCDS-----TARLWDTRVASRAVRTFH-G-HEG---DVNTVKFFP--DGNRFGTGSDDGTCRLFDIR-TGHQLQV  287 (389)
Q Consensus       221 ~l~~~~~dg-----~i~i~d~~~~~~~~~~~~-~-~~~---~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~-~~~~~~~  287 (389)
                      .|++++.++     .|++||+.++ .....+. . +..   .+..++|+|  +|+++++++.||.+++|++. ++.....
T Consensus       271 ~l~~~~~~~~~~~~~v~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~  349 (706)
T 2z3z_A          271 ILYVAEVNRAQNECKVNAYDAETG-RFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ  349 (706)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTC-CEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE
T ss_pred             EEEEEEeCCCCCeeEEEEEECCCC-ceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe
Confidence            888777665     8999999876 2333332 2 222   246789999  99999999999999999876 4555555


Q ss_pred             eeccCCCCCCCCeeE-EEeCCCCCEEEEEecC-C----cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458          288 YYQQHGENEIPHVTS-IAFSISGRLLFAGYSN-G----DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  361 (389)
Q Consensus       288 ~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d-g----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  361 (389)
                      +....     ..+.. ++|+|+|+.|+.++.+ +    .|+.||+.+++ ...+     .+...+.+++|+|||++|+.+
T Consensus       350 l~~~~-----~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l-----~~~~~~~~~~~spdg~~l~~~  418 (706)
T 2z3z_A          350 VTKGE-----WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL-----TPESGMHRTQLSPDGSAIIDI  418 (706)
T ss_dssp             CCCSS-----SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES-----CCSSSEEEEEECTTSSEEEEE
T ss_pred             cCCCC-----eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec-----cCCCceEEEEECCCCCEEEEE
Confidence            53322     23665 7999999987665544 3    56777776665 3333     356679999999999998876


Q ss_pred             eCC----CeeEEeecceecccCc
Q 016458          362 SWD----TNLKVNLGFWRVQEGA  380 (389)
Q Consensus       362 ~~d----g~i~i~~~~W~~~~~~  380 (389)
                      +.+    +.+.+    |++.+++
T Consensus       419 ~~~~~~p~~i~l----~d~~~~~  437 (706)
T 2z3z_A          419 FQSPTVPRKVTV----TNIGKGS  437 (706)
T ss_dssp             EECSSCSCEEEE----EESSSCE
T ss_pred             ecCCCCCcEEEE----EECCCCe
Confidence            554    45888    9998876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.96  E-value=7.6e-28  Score=226.32  Aligned_cols=287  Identities=13%  Similarity=0.059  Sum_probs=204.4

Q ss_pred             cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCC---cEEEEEECCCCcEEEEecCC---------CcEEEE
Q 016458           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA---WVMTCAFSPTGQSVACGGLD---------SVCSIF  136 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------g~i~vw  136 (389)
                      .+.+++|+|||+++++ +.||+|++||..+++....+..+..   .|.+++|+|+|++|++++.+         +.+.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678999999997776 7899999999999988877776654   48999999999999998764         778899


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC---------
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA---------  207 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---------  207 (389)
                      |+.++..     ........|...+..++|+|+| +.|+.++. +.|++||+.++......     ..+..         
T Consensus        97 d~~~~~~-----~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~~~-----~~~~~~~~~~g~~~  164 (723)
T 1xfd_A           97 KIPHGDP-----QSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIRVV-----STGKEGVIYNGLSD  164 (723)
T ss_dssp             ESSSCCC-----EECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEEEE-----CCCBTTTEEEEECC
T ss_pred             ECCCCce-----EeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEEEe-----cCCCCCceECcccc
Confidence            9987541     1122223455568889999998 56777665 79999999998776655     22222         


Q ss_pred             ---------CeeEEEeeCCCCcEEEEeeCCC----------------------------------ceEEEeCCCCCccee
Q 016458          208 ---------DVLSVSISGSNSRMFVSGSCDS----------------------------------TARLWDTRVASRAVR  244 (389)
Q Consensus       208 ---------~v~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~  244 (389)
                               .+.+++|+| +++.|++++.++                                  .|++||+.+. ....
T Consensus       165 ~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~-~~~~  242 (723)
T 1xfd_A          165 WLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP-THDL  242 (723)
T ss_dssp             HHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS-CCCE
T ss_pred             eeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC-ceeE
Confidence                     237899999 778887776543                                  7899999876 4334


Q ss_pred             EEeee------ccceEEEEEecCCCEEEEEec----CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEE
Q 016458          245 TFHGH------EGDVNTVKFFPDGNRFGTGSD----DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA  314 (389)
Q Consensus       245 ~~~~~------~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  314 (389)
                      .+..+      ...+..++|+|||++|++.+.    +..|++||+.+++....+..............++|+|||+.|+.
T Consensus       243 ~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  322 (723)
T 1xfd_A          243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFF  322 (723)
T ss_dssp             ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred             EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEE
Confidence            45443      567899999999998877653    35799999999886665533221100000137899999997665


Q ss_pred             --EecCC------cEEEEE-cccceE--EEeecCcCCCCCCCeeE-EEECCCCCeEEeeeCC---CeeEEeecceeccc
Q 016458          315 --GYSNG------DCYVWD-TLLAKV--VLNLGSLQNSHEGRITC-LGLSADGSALCTGSWD---TNLKVNLGFWRVQE  378 (389)
Q Consensus       315 --~~~dg------~i~i~d-~~~~~~--~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d---g~i~i~~~~W~~~~  378 (389)
                        +..++      .|++|| ...+..  ...+    ..+...+.. ++|+|||+.|+..+.+   +.+++    |++..
T Consensus       323 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l----~~~~~  393 (723)
T 1xfd_A          323 IRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI----TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQL----YSANT  393 (723)
T ss_dssp             EEEECCSSSSCEEEEEEECSSCCSSSCCCCBS----CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEE----EEECS
T ss_pred             EEecccCCCcceeEEEEEeccCCCCccceeEe----ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEE----EEEeC
Confidence              44566      577777 344431  3344    223334544 6999999999876665   78899    99864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.96  E-value=1.9e-25  Score=190.00  Aligned_cols=275  Identities=11%  Similarity=0.034  Sum_probs=196.7

Q ss_pred             CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEec-CCcEEEEeCCCCCe-eEEEeeCCCcEEEEEECCCCc
Q 016458           45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ-DGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPTGQ  122 (389)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~  122 (389)
                      .......|++...+....+..+...+ +++|+|+++++++++. ++.|.+||..+++. ...+..+..+..+++|+|+++
T Consensus        18 ~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~   96 (331)
T 3u4y_A           18 HLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQ   96 (331)
T ss_dssp             GGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSS
T ss_pred             CCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCC
Confidence            34456678888777777777777777 9999999997766655 88999999999988 777777766665599999999


Q ss_pred             EEEEecCCC---cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe-EEEEeCCCCeeEEEec
Q 016458          123 SVACGGLDS---VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT-CVLWDITTGLRTSVFG  198 (389)
Q Consensus       123 ~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~  198 (389)
                      +++++..++   .|.+||+.++.       ....+.. .....+++|+|++..++++...++. |.+|++..........
T Consensus        97 ~l~~~~~~~~~~~i~v~d~~~~~-------~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~  168 (331)
T 3u4y_A           97 FAVTVTGLNHPFNMQSYSFLKNK-------FISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG  168 (331)
T ss_dssp             EEEECCCSSSSCEEEEEETTTTE-------EEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred             EEEEecCCCCcccEEEEECCCCC-------eEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC
Confidence            999665553   89999998754       3333333 3456899999998656666677788 9999988644332111


Q ss_pred             CcccCCCCCCeeEEEeeCCCCc-EEEEeeCCCceEEEeCCCCCcc---eeEEeeeccceEEEEEecCCCEEEEEe-cCCe
Q 016458          199 GEFQSGHTADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVASRA---VRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGT  273 (389)
Q Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~  273 (389)
                       .........+..++|+| +++ +++++..++.|.+||+.+. +.   +..+. ....+..++|+|+|+++++++ .++.
T Consensus       169 -~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~-~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~  244 (331)
T 3u4y_A          169 -QEFISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQNP-ENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVD  244 (331)
T ss_dssp             -EEEECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSST-TSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEE
T ss_pred             -CccccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCCC-cccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCE
Confidence             00023345689999999 665 5556667899999999876 44   55554 346678999999999776654 5788


Q ss_pred             EEEEECCCCce--eeEeecc--CCCCCCCCeeEEEeCCCCCEEEEEec-CCcEEEEEcccceEE
Q 016458          274 CRLFDIRTGHQ--LQVYYQQ--HGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVV  332 (389)
Q Consensus       274 i~i~d~~~~~~--~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~  332 (389)
                      |.+||+.+++.  +..+...  ...........++|+|+|++|++++. ++.|.+||+......
T Consensus       245 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~  308 (331)
T 3u4y_A          245 VFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVG  308 (331)
T ss_dssp             EEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEE
T ss_pred             EEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccc
Confidence            99999998876  3332221  01111112356899999998876655 569999999765543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.95  E-value=3e-26  Score=223.08  Aligned_cols=309  Identities=12%  Similarity=0.073  Sum_probs=224.1

Q ss_pred             ccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecC------CcEEEEeCCCCCeeEEEeeCCCcE-------EEEEE
Q 016458           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQD------GRLIVWNALTSQKTHAIKLPCAWV-------MTCAF  117 (389)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~d------g~v~iw~~~~~~~~~~~~~~~~~v-------~~~~~  117 (389)
                      .|+.... ..+.+.+|.+.+.+++|||||++||+++.+      ..|++|++.+++ ...+..|...+       ..++|
T Consensus        37 ~~~~~gg-~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~  114 (1045)
T 1k32_A           37 EHDLKSG-STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGF  114 (1045)
T ss_dssp             EEETTTC-CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEE
T ss_pred             EEECCCC-cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccC
Confidence            3444433 345778899999999999999999988653      379999988765 56677777777       89999


Q ss_pred             CCCCcEEEEecCC------CcEEEEeCCCCCCCC---CC----------------------C-----------------c
Q 016458          118 SPTGQSVACGGLD------SVCSIFNLNSPTDKD---GN----------------------L-----------------P  149 (389)
Q Consensus       118 ~~~~~~l~~~~~d------g~i~vw~~~~~~~~~---~~----------------------~-----------------~  149 (389)
                      +|+|+++++++.+      ..|.+|++.++....   ..                      +                 .
T Consensus       115 SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~  194 (1045)
T 1k32_A          115 DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG  194 (1045)
T ss_dssp             CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT
T ss_pred             CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCC
Confidence            9999977777644      357777775532110   00                      0                 0


Q ss_pred             ceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC-CeeEEEec-----------Cc-----------------
Q 016458          150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVFG-----------GE-----------------  200 (389)
Q Consensus       150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~-----------~~-----------------  200 (389)
                      ....+.+|...+.++.|+++  .++++++.++.+.+|.+.. +.....+.           ..                 
T Consensus       195 ~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~  272 (1045)
T 1k32_A          195 AFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNP  272 (1045)
T ss_dssp             EEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECT
T ss_pred             CeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecC
Confidence            11223567788888999875  5677777888888886542 11111110           00                 


Q ss_pred             ----c--cCC-----------CCCCeeEEEee-CCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeecc-ceEEEEEecC
Q 016458          201 ----F--QSG-----------HTADVLSVSIS-GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFPD  261 (389)
Q Consensus       201 ----~--~~~-----------~~~~v~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~  261 (389)
                          .  ...           +...+.+++|+ | +++.+++++ ++.|.+|+.... . ...+..|.. .+..++|+ +
T Consensus       273 ~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~-~-~~~~~~~~~~~~~~~~~s-d  347 (1045)
T 1k32_A          273 DTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGT-Y-VLKVPEPLRIRYVRRGGD-T  347 (1045)
T ss_dssp             TTCCEEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSS-B-EEECSCCSCEEEEEECSS-S
T ss_pred             CceEeeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCC-c-eEEccCCCcceEEeeeEc-C
Confidence                0  000           12257888899 8 777777766 788999988754 2 334556666 88999999 9


Q ss_pred             CCEEEEEecCCeEE-EEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCC
Q 016458          262 GNRFGTGSDDGTCR-LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN  340 (389)
Q Consensus       262 ~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  340 (389)
                      |+.|++++.++.+. +||+..+..... ..     +...+..++|+|||++|++++.++.|++||+.+++.....    .
T Consensus       348 g~~l~~~s~~~~l~~~~d~~~~~~~~l-~~-----~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~----~  417 (1045)
T 1k32_A          348 KVAFIHGTREGDFLGIYDYRTGKAEKF-EE-----NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE----R  417 (1045)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEC-CC-----CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE----E
T ss_pred             CCeEEEEECCCceEEEEECCCCCceEe-cC-----CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec----c
Confidence            99999999888899 999987654332 22     2234899999999999999999999999999998887766    5


Q ss_pred             CCCCCeeEEEECCCCCeEEeeeCCC----------eeEEeecceecccCccc
Q 016458          341 SHEGRITCLGLSADGSALCTGSWDT----------NLKVNLGFWRVQEGALS  382 (389)
Q Consensus       341 ~~~~~v~~~~~~~~~~~l~~~~~dg----------~i~i~~~~W~~~~~~~~  382 (389)
                      .|.+.+.+++|+|||++|++++.++          .|++    ||+.+++..
T Consensus       418 ~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l----~d~~~g~~~  465 (1045)
T 1k32_A          418 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV----YDMEGRKIF  465 (1045)
T ss_dssp             CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE----EETTTTEEE
T ss_pred             CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE----EECCCCcEE
Confidence            7888999999999999999887754          8999    999988754

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.95  E-value=1.7e-26  Score=211.49  Aligned_cols=271  Identities=12%  Similarity=0.104  Sum_probs=200.6

Q ss_pred             cCcEEEEEEcCCCCeEEEEec-CCcEEEEeCCCCCeeEEEeeCC-CcEEEEEECCCCcEEEEecC---CCcEEEEeCCC-
Q 016458           67 AGKVYSLDWTSERNRIVSASQ-DGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGL---DSVCSIFNLNS-  140 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~-  140 (389)
                      ..+|.+++|+|||++||+++. ||+++||++.+++. ..+..+. ..+..++|+|+ +.+++++.   +....+|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            457999999999999999887 99999999865554 4444444 67999999999 77777664   45566766543 


Q ss_pred             -CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458          141 -PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (389)
Q Consensus       141 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (389)
                       ...      .. .+... ..+...+|+|+++..+++.+.++.+.+||+.+++.....     . +..  .+++|+| ++
T Consensus        99 ~~g~------~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~-----~-~~~--~~~~~sp-DG  161 (582)
T 3o4h_A           99 RPGE------EQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA-----R-LPG--FGFVSDI-RG  161 (582)
T ss_dssp             STTC------CE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE-----E-ESS--CEEEEEE-ET
T ss_pred             CCCc------cc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee-----c-CCC--ceEEECC-CC
Confidence             210      11 22222 123466899988766666666666669999998766554     1 222  7899999 88


Q ss_pred             cEEEEeeCC----CceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCC--eEEEEECCCCceeeEeeccCC
Q 016458          220 RMFVSGSCD----STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG--TCRLFDIRTGHQLQVYYQQHG  293 (389)
Q Consensus       220 ~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~  293 (389)
                      +.+++++.+    +.|++||+.++ + ...+..|...+..++|+|||++|+++..++  .|++||+.+++.. .+.... 
T Consensus       162 ~~la~~~~~~~~~~~i~~~d~~~g-~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~-  237 (582)
T 3o4h_A          162 DLIAGLGFFGGGRVSLFTSNLSSG-G-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS-  237 (582)
T ss_dssp             TEEEEEEEEETTEEEEEEEETTTC-C-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC-
T ss_pred             CEEEEEEEcCCCCeEEEEEcCCCC-C-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC-
Confidence            888877776    78999998865 3 446778888899999999999999888888  8999999988766 332221 


Q ss_pred             CCCCCCeeEEE--------eCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458          294 ENEIPHVTSIA--------FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (389)
Q Consensus       294 ~~~~~~i~~~~--------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  365 (389)
                          ..+..++        |+|||.++++++.+|.+++|++  ++...       .+.+.|.+++|+ +++++++++.+.
T Consensus       238 ----~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~-------~~~~~v~~~~~s-dg~~l~~~s~~~  303 (582)
T 3o4h_A          238 ----KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE-------APQGNHGRVVLW-RGKLVTSHTSLS  303 (582)
T ss_dssp             ----SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC-------CCSSEEEEEEEE-TTEEEEEEEETT
T ss_pred             ----cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec-------cCCCceEEEEec-CCEEEEEEcCCC
Confidence                1244455        9999999999999999999999  65543       233678999999 999999988875


Q ss_pred             e---eEEeecceeccc
Q 016458          366 N---LKVNLGFWRVQE  378 (389)
Q Consensus       366 ~---i~i~~~~W~~~~  378 (389)
                      .   +.+    |+..+
T Consensus       304 ~p~~l~~----~d~~~  315 (582)
T 3o4h_A          304 TPPRIVS----LPSGE  315 (582)
T ss_dssp             EEEEEEE----ETTCC
T ss_pred             CCCeEEE----EcCCC
Confidence            4   555    66553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.95  E-value=5.3e-26  Score=221.33  Aligned_cols=284  Identities=12%  Similarity=0.076  Sum_probs=221.8

Q ss_pred             eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC-CCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Q 016458           59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (389)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (389)
                      ....+.+|.+.+.++.|+++ .++++++.|+.+.||.+.. +.....+..+. .+...+|+|+|+.|+.+ .++.|.+|+
T Consensus       195 ~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d  271 (1045)
T 1k32_A          195 AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFN  271 (1045)
T ss_dssp             EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEEC
T ss_pred             CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEec
Confidence            34556899999999999998 6777888889999998753 44445555554 35677999999999887 489999999


Q ss_pred             CCCCCCCCCCCcceeeecc-----------cccceEEEEEe-eCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCC
Q 016458          138 LNSPTDKDGNLPVSRMLSG-----------HKGYVSCCQYV-PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH  205 (389)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  205 (389)
                      +....       . ..+..           |...+.+++|+ |++ ..+++++ ++.|.+|++..+.... +     ..+
T Consensus       272 ~~~~~-------l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~~~~-~-----~~~  335 (1045)
T 1k32_A          272 PDTEK-------I-EKIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYVLK-V-----PEP  335 (1045)
T ss_dssp             TTTCC-------E-EECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSBEEE-C-----SCC
T ss_pred             CCceE-------e-eeeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCceEE-c-----cCC
Confidence            84321       1 12222           45578999999 998 5666666 8899999998876554 3     355


Q ss_pred             CC-CeeEEEeeCCCCcEEEEeeCCCceE-EEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458          206 TA-DVLSVSISGSNSRMFVSGSCDSTAR-LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (389)
Q Consensus       206 ~~-~v~~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (389)
                      .. .+..++|+  +++.++.++.++.+. +||+... . ...+..|...+..++|+|+|++|++++.++.|++||+.+++
T Consensus       336 ~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~-~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~  411 (1045)
T 1k32_A          336 LRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTG-K-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  411 (1045)
T ss_dssp             SCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTC-C-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CcceEEeeeEc--CCCeEEEEECCCceEEEEECCCC-C-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc
Confidence            56 78999998  667777777788888 8998765 3 33444777889999999999999999999999999999988


Q ss_pred             eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC----------cEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----------DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (389)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (389)
                      .......+.     ..+..++|+|||++|++++.++          .|++||+.+++ ...+    ..|...+.+++|+|
T Consensus       412 ~~~~~~~~~-----~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l----~~~~~~~~~~~~sp  481 (1045)
T 1k32_A          412 PTVIERSRE-----AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA----TTENSHDYAPAFDA  481 (1045)
T ss_dssp             EEEEEECSS-----SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC----SCSSSBEEEEEECT
T ss_pred             eEEeccCCC-----CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEe----eCCCcccCCceEcC
Confidence            766553332     2478999999999998887654          89999999887 5555    57788899999999


Q ss_pred             CCCeEEeeeCCCeeEEeecceecccC
Q 016458          354 DGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       354 ~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      ||++|++++.++...+    |+....
T Consensus       482 dG~~l~~~s~~~~~~~----~~~~~~  503 (1045)
T 1k32_A          482 DSKNLYYLSYRSLDPS----PDRVVL  503 (1045)
T ss_dssp             TSCEEEEEESCCCCCE----ECSSSS
T ss_pred             CCCEEEEEecccCCcC----cchhcc
Confidence            9999999999888888    775543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=3e-26  Score=214.81  Aligned_cols=281  Identities=12%  Similarity=0.108  Sum_probs=198.1

Q ss_pred             EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee-EEEeeCC-----------------CcEEEEEECCCCcEEEEecCCC
Q 016458           70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-HAIKLPC-----------------AWVMTCAFSPTGQSVACGGLDS  131 (389)
Q Consensus        70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~dg  131 (389)
                      +..+.|.  ++.+++++.|+ | +||+.+++.+ ..+..+.                 ..|.+++|+|+ +.++.+. ++
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~  101 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG  101 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence            5567888  66777777787 8 9999999873 3333322                 46999999999 6555553 59


Q ss_pred             cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC-----CeeEEEecCcccCCCC
Q 016458          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-----GLRTSVFGGEFQSGHT  206 (389)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~  206 (389)
                      .|++||+.++.        ...+..+...+.+++|+|+| +.|++ ..++.|++||+.+     ++.....     ..+.
T Consensus       102 ~i~~~d~~~~~--------~~~l~~~~~~~~~~~~SpdG-~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~-----~~~~  166 (706)
T 2z3z_A          102 GLVGFDMLARK--------VTYLFDTNEETASLDFSPVG-DRVAY-VRNHNLYIARGGKLGEGMSRAIAVT-----IDGT  166 (706)
T ss_dssp             EEEEEETTTTE--------EEEEECCTTCCTTCEECTTS-SEEEE-EETTEEEEEECBCTTSCCCCCEESC-----SCCB
T ss_pred             EEEEEECCCCc--------eEEccCCcccccCCcCCCCC-CEEEE-EECCeEEEEecCcccccCCCcEEec-----cCCC
Confidence            99999998743        23344566778889999998 56666 4679999999998     7665543     2222


Q ss_pred             C--------------CeeEEEeeCCCCcEEEEee---------------------------------CCCceEEEeCCCC
Q 016458          207 A--------------DVLSVSISGSNSRMFVSGS---------------------------------CDSTARLWDTRVA  239 (389)
Q Consensus       207 ~--------------~v~~~~~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~  239 (389)
                      .              .+.++.|+| +++.|++++                                 .+..|++||+.++
T Consensus       167 ~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~  245 (706)
T 2z3z_A          167 ETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG  245 (706)
T ss_dssp             TTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT
T ss_pred             CCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC
Confidence            2              258899999 788888776                                 4467999999876


Q ss_pred             CcceeEE--eeeccceEEEEEecCCCEEEEEecCC-----eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC--CCC
Q 016458          240 SRAVRTF--HGHEGDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI--SGR  310 (389)
Q Consensus       240 ~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~  310 (389)
                       ......  ..|...+.+++|+|||++|++++.++     .|.+||+.+++....+...........+..++|+|  +|+
T Consensus       246 -~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~  324 (706)
T 2z3z_A          246 -KTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ  324 (706)
T ss_dssp             -EEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE
T ss_pred             -ceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE
Confidence             322222  24566799999999999999988775     89999999884444433222221111246789999  999


Q ss_pred             EEEEEecCCcEEEEEcc-cceEEEeecCcCCCCCCCeeE-EEECCCCCeEEeeeCC-C----eeEEeecceecccCcc
Q 016458          311 LLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITC-LGLSADGSALCTGSWD-T----NLKVNLGFWRVQEGAL  381 (389)
Q Consensus       311 ~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d-g----~i~i~~~~W~~~~~~~  381 (389)
                      ++++++.+|.+++|++. ++..+..+    ..+...+.. ++|+|+|+.|+.++.+ +    .|..    |++.++++
T Consensus       325 ~l~~~~~~g~~~l~~~~~~~~~~~~l----~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~----~d~~~~~~  394 (706)
T 2z3z_A          325 FIWQSRRDGWNHLYLYDTTGRLIRQV----TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYC----IDIKGGKT  394 (706)
T ss_dssp             EEEEECTTSSCEEEEEETTSCEEEEC----CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE----EETTCCCC
T ss_pred             EEEEEccCCccEEEEEECCCCEEEec----CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE----EEcCCCCc
Confidence            99999999999999886 56666666    567777877 7999999988766554 3    4555    77777654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=6.9e-26  Score=189.39  Aligned_cols=255  Identities=14%  Similarity=0.095  Sum_probs=187.6

Q ss_pred             CCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC-CCeeEEEeeC-CCcEEEEEECCCCcE
Q 016458           46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-SQKTHAIKLP-CAWVMTCAFSPTGQS  123 (389)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~  123 (389)
                      +.....|+....+.. .+..|.+.|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|++++
T Consensus        21 ~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~   98 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGAL   98 (297)
T ss_dssp             CEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSE
T ss_pred             ceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCE
Confidence            344556776665544 5667899999999999999999986 78999999998 7776665555 367889999999999


Q ss_pred             EEEec--CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC--CCeeEEEecC
Q 016458          124 VACGG--LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT--TGLRTSVFGG  199 (389)
Q Consensus       124 l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~  199 (389)
                      |++++  .++...||.++....      ....+..+ ..+..++|+|++..++++++.++.+.+|++.  ++.. ..+  
T Consensus        99 l~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~--  168 (297)
T 2ojh_A           99 YAISDKVEFGKSAIYLLPSTGG------TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRL--  168 (297)
T ss_dssp             EEEEECTTTSSCEEEEEETTCC------CCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EEC--
T ss_pred             EEEEEeCCCCcceEEEEECCCC------ceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEc--
Confidence            99988  345566666543211      12223333 3488899999985555588899999999853  3433 333  


Q ss_pred             cccCCCCCCeeEEEeeCCCCcEEEEee-CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC-------
Q 016458          200 EFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-------  271 (389)
Q Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------  271 (389)
                         ..+...+.+++|+| +++.+++++ .++.+.+|+++........+..|...+..++|+|++++|++++.+       
T Consensus       169 ---~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  244 (297)
T 2ojh_A          169 ---THGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHP  244 (297)
T ss_dssp             ---CCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred             ---ccCCCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence               46677899999999 666665554 689999999874446667777788889999999999999988876       


Q ss_pred             ----CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC
Q 016458          272 ----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG  319 (389)
Q Consensus       272 ----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (389)
                          +.|.+||+.+++........   .+...+..++|+|++++|++++.+.
T Consensus       245 ~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          245 RDLDVRVQLMDMDGGNVETLFDLF---GGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SSEEEEEEEEETTSCSCEEEEEEE---ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             ccCceEEEEEecCCCCceeeeccC---CCCcccccceECCCCCEEEEEEecc
Confidence                56999999887654433221   1122478899999999998887654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.95  E-value=1.1e-25  Score=211.52  Aligned_cols=300  Identities=11%  Similarity=0.022  Sum_probs=204.2

Q ss_pred             CCCCcccCCCcceeeeecccccC---cEEEEEEcCCCCeEEEEecC---------CcEEEEeCCCCCeeEEEee---CCC
Q 016458           46 GRAPVSFGPTDLVCCRTLQGHAG---KVYSLDWTSERNRIVSASQD---------GRLIVWNALTSQKTHAIKL---PCA  110 (389)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~h~~---~v~~~~~~~~~~~l~~~~~d---------g~v~iw~~~~~~~~~~~~~---~~~  110 (389)
                      +.....|++...+....+.+|..   .|.+++|||||++|++++.+         +.+.+||+.+++. ..+..   +..
T Consensus        36 dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~  114 (723)
T 1xfd_A           36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNA  114 (723)
T ss_dssp             SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSC
T ss_pred             CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccc
Confidence            34566788887777778877775   49999999999999998764         7888999998876 33332   333


Q ss_pred             cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccccc------------------ceEEEEEeeCCCc
Q 016458          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG------------------YVSCCQYVPDEDT  172 (389)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~  172 (389)
                      .+..++|+|+|+.|+.++. +.|++|++.++.       .......+..                  .+.++.|+|+| +
T Consensus       115 ~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-------~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~  185 (723)
T 1xfd_A          115 KLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-------AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-T  185 (723)
T ss_dssp             CCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-------CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-S
T ss_pred             cccccEECCCCCEEEEEEC-CeEEEEECCCCc-------eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC-C
Confidence            4888999999999999876 789999998754       2222232222                  23789999998 5


Q ss_pred             EEEEeeCCC----------------------------------eEEEEeCCCCeeEEEecCc-ccCCCCCCeeEEEeeCC
Q 016458          173 HLITSSGDQ----------------------------------TCVLWDITTGLRTSVFGGE-FQSGHTADVLSVSISGS  217 (389)
Q Consensus       173 ~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~  217 (389)
                      .|++++.++                                  .|++||+.++.....+... ....+...+.+++|+| 
T Consensus       186 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-  264 (723)
T 1xfd_A          186 RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-  264 (723)
T ss_dssp             EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-
T ss_pred             EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-
Confidence            666665432                                  7999999988754444210 0011356789999999 


Q ss_pred             CCcEEEEeeC----CCceEEEeCCCCCcceeEEeee-ccce----EEEEEecCCCEEEEE--ecCC------eEEEEEC-
Q 016458          218 NSRMFVSGSC----DSTARLWDTRVASRAVRTFHGH-EGDV----NTVKFFPDGNRFGTG--SDDG------TCRLFDI-  279 (389)
Q Consensus       218 ~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~-~~~i----~~~~~~~~~~~l~~~--~~dg------~i~i~d~-  279 (389)
                      +++++++...    +..|++||+.++ +....+..+ ...+    ..++|+|||+.|+..  ..++      .|.+||+ 
T Consensus       265 Dg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~  343 (723)
T 1xfd_A          265 STKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQ  343 (723)
T ss_dssp             SSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSS
T ss_pred             CCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEecc
Confidence            7777766543    357999999876 444444333 3333    378999999977754  4666      5777773 


Q ss_pred             CCCce--eeEeeccCCCCCCCCeeE-EEeCCCCCEEEEEecC---CcEEEEEcccce--EEEeecCcCCCCCCCeeEEEE
Q 016458          280 RTGHQ--LQVYYQQHGENEIPHVTS-IAFSISGRLLFAGYSN---GDCYVWDTLLAK--VVLNLGSLQNSHEGRITCLGL  351 (389)
Q Consensus       280 ~~~~~--~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d---g~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~~~  351 (389)
                      ..+..  ...+.....     .+.. ++|+|+|+.|+..+.+   +.+++|++....  ....+... ..|...+..++|
T Consensus       344 ~~~~~~~~~~l~~~~~-----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~  417 (723)
T 1xfd_A          344 PNSSNDNIQSITSGDW-----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD-LVENCTYFSASF  417 (723)
T ss_dssp             CCSSSCCCCBSCCSSS-----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT-SSSSCCCCEEEE
T ss_pred             CCCCccceeEeecCCe-----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc-ccCCCCeEEEEE
Confidence            43331  333322111     2444 6899999998766555   789999986432  23333100 016677899999


Q ss_pred             CCCCCeEEeeeC
Q 016458          352 SADGSALCTGSW  363 (389)
Q Consensus       352 ~~~~~~l~~~~~  363 (389)
                      +|||++|+....
T Consensus       418 spdg~~l~~~~~  429 (723)
T 1xfd_A          418 SHSMDFFLLKCE  429 (723)
T ss_dssp             CTTSSEEEEECC
T ss_pred             CCCCCEEEEEcc
Confidence            999998876543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.95  E-value=1.9e-24  Score=185.11  Aligned_cols=280  Identities=10%  Similarity=0.062  Sum_probs=184.9

Q ss_pred             CCcEEEEeCC--CCCeeE-EEeeCCCcEEEEEECCCCcEEEEecC---CCcEEEEeCCCCCCCCCCCcceeeecccccce
Q 016458           88 DGRLIVWNAL--TSQKTH-AIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV  161 (389)
Q Consensus        88 dg~v~iw~~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v  161 (389)
                      ++.|.+|++.  +++... ....+...+..++|+|+|+ |++++.   ++.|.+|++..+.     .........+...+
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~-----~~~~~~~~~~~~~p   88 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT-----AHKLNTVVAPGTPP   88 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE-----EEEEEEEEEESCCC
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc-----EEEeeeeecCCCCC
Confidence            4567777664  454433 2234456678899999999 555543   6899999996532     12333444567788


Q ss_pred             EEEEEeeCCCcEEEEee-CCCeEEEEeCCC-Ce--eEEEecCccc----CCCCCCeeEEEeeCCCCcEEEEeeCCCceEE
Q 016458          162 SCCQYVPDEDTHLITSS-GDQTCVLWDITT-GL--RTSVFGGEFQ----SGHTADVLSVSISGSNSRMFVSGSCDSTARL  233 (389)
Q Consensus       162 ~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~--~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  233 (389)
                      ..++|+|++ ++|++++ .++.|.+|++.. +.  .+..+.....    ......+.+++|+| +++++++...++.|.+
T Consensus        89 ~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~  166 (347)
T 3hfq_A           89 AYVAVDEAR-QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYV  166 (347)
T ss_dssp             SEEEEETTT-TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEE
T ss_pred             EEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEE
Confidence            899999998 5566555 789999999963 22  2222211000    01223588999999 6667777777889999


Q ss_pred             EeCCCCCccee--EEeee-ccceEEEEEecCCCEEEE-EecCCeEEEEECCC--Cceee--EeeccC-CCCCCCCeeEEE
Q 016458          234 WDTRVASRAVR--TFHGH-EGDVNTVKFFPDGNRFGT-GSDDGTCRLFDIRT--GHQLQ--VYYQQH-GENEIPHVTSIA  304 (389)
Q Consensus       234 ~d~~~~~~~~~--~~~~~-~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~~~--~~~~~~-~~~~~~~i~~~~  304 (389)
                      ||+........  .+..+ ...+..++|+|+|+++++ ...++.|.+|++..  ++...  .+.... .......+..++
T Consensus       167 ~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  246 (347)
T 3hfq_A          167 YNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR  246 (347)
T ss_dssp             EEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred             EEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE
Confidence            99983323221  12222 235788999999996665 55788999999874  43221  111111 001113478899


Q ss_pred             eCCCCCEEEE-EecCCcEEEEEccc---ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC-CeeEEeecce--ecc
Q 016458          305 FSISGRLLFA-GYSNGDCYVWDTLL---AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TNLKVNLGFW--RVQ  377 (389)
Q Consensus       305 ~~~~~~~l~~-~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~~~~W--~~~  377 (389)
                      |+|+|++|++ ...++.|.+|++..   .+.+..+    ..+...+.+++|+|||++|++++.+ +.+.+    |  +..
T Consensus       247 ~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~----~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v----~~~d~~  318 (347)
T 3hfq_A          247 LSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI----STEGDFPRDFDLDPTEAFVVVVNQNTDNATL----YARDLT  318 (347)
T ss_dssp             ECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE----ECSSSCCCEEEECTTSSEEEEEETTTTEEEE----EEECTT
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE----ecCCCCcCeEEECCCCCEEEEEEcCCCcEEE----EEEeCC
Confidence            9999998755 45688999999873   2444444    4556678999999999988888765 89999    9  556


Q ss_pred             cCcccC
Q 016458          378 EGALSP  383 (389)
Q Consensus       378 ~~~~~~  383 (389)
                      +|++..
T Consensus       319 tg~l~~  324 (347)
T 3hfq_A          319 SGKLSL  324 (347)
T ss_dssp             TCCEEE
T ss_pred             CCeEEe
Confidence            777654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=1.1e-24  Score=186.23  Aligned_cols=274  Identities=13%  Similarity=0.145  Sum_probs=183.1

Q ss_pred             ccccCcEEEEEEcCCCCeEEEEecC-CcEEEEeCC--CCCe--eEEEeeCCCcEEEEEECCCCcEEEEecC-CCcEEEEe
Q 016458           64 QGHAGKVYSLDWTSERNRIVSASQD-GRLIVWNAL--TSQK--THAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFN  137 (389)
Q Consensus        64 ~~h~~~v~~~~~~~~~~~l~~~~~d-g~v~iw~~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~  137 (389)
                      ..|...+.+++|+|++++|++++.+ +.|.+|++.  +++.  +..+..+. .+..++|+|+++++++++. ++.|.+|+
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence            3577789999999999999888876 999999997  5553  33444443 7889999999998876654 88999999


Q ss_pred             CCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee-CCCeEEEEeCCC-CeeEEEecCcccCCCCCCeeEEEee
Q 016458          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSIS  215 (389)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~  215 (389)
                      +..+.    .......... ...+.+++|+|++. .+++++ .++.|.+||+.+ +.................+..++|+
T Consensus       113 ~~~~~----~~~~~~~~~~-~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (343)
T 1ri6_A          113 LEDGL----PVGVVDVVEG-LDGCHSANISPDNR-TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH  186 (343)
T ss_dssp             EETTE----EEEEEEEECC-CTTBCCCEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC
T ss_pred             CCCCc----cccccccccC-CCCceEEEECCCCC-EEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEEC
Confidence            95211    1112233333 34588899999984 555555 899999999987 5443211000002234578899999


Q ss_pred             CCCCcEE-EEeeCCCceEEEeCCCCCcc---eeEEeee------ccceEEEEEecCCCEEEEE-ecCCeEEEEECCC--C
Q 016458          216 GSNSRMF-VSGSCDSTARLWDTRVASRA---VRTFHGH------EGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRT--G  282 (389)
Q Consensus       216 ~~~~~~l-~~~~~dg~i~i~d~~~~~~~---~~~~~~~------~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~--~  282 (389)
                      | +++++ +++..++.|.+||+......   .......      ...+..++|+|++++|+++ ..++.|.+||+..  +
T Consensus       187 p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~  265 (343)
T 1ri6_A          187 P-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS  265 (343)
T ss_dssp             T-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred             C-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC
Confidence            9 56644 55558899999999642111   2222211      2246689999999888754 4789999999983  2


Q ss_pred             c--eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEcc--cceE--EEeecCcCCCCCCCeeEEEECCCC
Q 016458          283 H--QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTL--LAKV--VLNLGSLQNSHEGRITCLGLSADG  355 (389)
Q Consensus       283 ~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~--~~~~~~~~~~~~~~v~~~~~~~~~  355 (389)
                      .  .+..+... .     .+..++|+|+|++|++++ .++.|.+|++.  +++.  +..+    .. .....+++|.++.
T Consensus       266 ~~~~~~~~~~~-~-----~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~----~~-g~~p~~i~~~~~~  334 (343)
T 1ri6_A          266 VLSKEGFQPTE-T-----QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRY----AV-GQGPMWVVVNAHE  334 (343)
T ss_dssp             CEEEEEEEECS-S-----SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEE----EC-SSSCCEEEEEEEC
T ss_pred             ceEEeeeecCC-C-----ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccc----cc-CCCCeeEEEEccc
Confidence            2  22222221 1     278899999999888887 57999999554  5543  3333    12 2456678887754


Q ss_pred             C
Q 016458          356 S  356 (389)
Q Consensus       356 ~  356 (389)
                      +
T Consensus       335 ~  335 (343)
T 1ri6_A          335 G  335 (343)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.95  E-value=4.2e-24  Score=183.93  Aligned_cols=289  Identities=10%  Similarity=0.027  Sum_probs=190.0

Q ss_pred             CeEEEEe----cCCcEEEEeC--CCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC----CcEEEEeCCCCCCCCCCCc
Q 016458           80 NRIVSAS----QDGRLIVWNA--LTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD----SVCSIFNLNSPTDKDGNLP  149 (389)
Q Consensus        80 ~~l~~~~----~dg~v~iw~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~  149 (389)
                      .+++.|+    .++.|.+|++  .+++.......+...+..++|+|++++|++++.+    +.|.+|+++...   ....
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~---g~~~   90 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK---GTLH   90 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT---TEEE
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC---CcEE
Confidence            3555554    4568999866  4555443333356678889999999999998875    799999987631   1122


Q ss_pred             ceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc---------ccCCCCCCeeEEEeeCCCCc
Q 016458          150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE---------FQSGHTADVLSVSISGSNSR  220 (389)
Q Consensus       150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~  220 (389)
                      .......+......+++  ++..++++...++.|.+|++.....+......         ....+...+.+++|+| +++
T Consensus        91 ~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~  167 (361)
T 3scy_A           91 LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGK  167 (361)
T ss_dssp             EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSS
T ss_pred             EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCC
Confidence            23333334556677777  55444444457899999999754332211000         0011233468899999 666


Q ss_pred             EE-EEeeCCCceEEEeCCCCCc----c-e-------eEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceee
Q 016458          221 MF-VSGSCDSTARLWDTRVASR----A-V-------RTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQ  286 (389)
Q Consensus       221 ~l-~~~~~dg~i~i~d~~~~~~----~-~-------~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~  286 (389)
                      ++ ++...++.|.+|++.....    . +       .....+...+..++|+|+|+++++++ .++.|.+||+.++....
T Consensus       168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~  247 (361)
T 3scy_A          168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE  247 (361)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE
T ss_pred             EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE
Confidence            44 5555588999999876532    1 1       11223345678999999999887777 68999999998765432


Q ss_pred             EeeccCCCCCCCCeeEEEeCCCCCEEEEEecC--CcEEEEEcc--cce--EEEeecCcCCCCCCCeeEEEECCCCCeEEe
Q 016458          287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSN--GDCYVWDTL--LAK--VVLNLGSLQNSHEGRITCLGLSADGSALCT  360 (389)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~--~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  360 (389)
                      ................++|+|||++|+++..+  +.|.+|++.  +++  .+..+    .. ...+.+++|+|||++|++
T Consensus       248 ~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~----~~-g~~~~~~~~spdg~~l~~  322 (361)
T 3scy_A          248 IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ----LT-GIHPRNFIITPNGKYLLV  322 (361)
T ss_dssp             EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE----EC-SSCCCEEEECTTSCEEEE
T ss_pred             eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe----cC-CCCCceEEECCCCCEEEE
Confidence            22222222222346899999999999777665  889999986  344  33333    22 457889999999999888


Q ss_pred             ee-CCCeeEEeecceec--ccCcccC
Q 016458          361 GS-WDTNLKVNLGFWRV--QEGALSP  383 (389)
Q Consensus       361 ~~-~dg~i~i~~~~W~~--~~~~~~~  383 (389)
                      ++ .++.|.+    |++  .+|++..
T Consensus       323 ~~~~~~~v~v----~~~d~~~g~~~~  344 (361)
T 3scy_A          323 ACRDTNVIQI----FERDQATGLLTD  344 (361)
T ss_dssp             EETTTTEEEE----EEECTTTCCEEE
T ss_pred             EECCCCCEEE----EEEECCCCcEee
Confidence            87 5788998    655  4676654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.94  E-value=2.5e-24  Score=188.74  Aligned_cols=299  Identities=12%  Similarity=0.084  Sum_probs=196.8

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC----------CeeEE-----EeeCCCcEEEEEECCCCcEEE----Ee
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTS----------QKTHA-----IKLPCAWVMTCAFSPTGQSVA----CG  127 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~----------~~~~~-----~~~~~~~v~~~~~~~~~~~l~----~~  127 (389)
                      ...++.+++++++.++++++.|+ +++|+....          .....     ...+...|.+++|+|++++|+    +|
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            44689999999999999999887 899875311          01110     112345799999999999999    78


Q ss_pred             cCCCcEEEEeCCCCCC----CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccC
Q 016458          128 GLDSVCSIFNLNSPTD----KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS  203 (389)
Q Consensus       128 ~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  203 (389)
                      +.|+.|++||+.+...    ..........+.+|...|.+++|+|+.+.+|++++.||.|++||++++......     .
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~-----~  189 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT-----L  189 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE-----E
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec-----c
Confidence            8999999999875310    001112245667899999999999985589999999999999999998665554     4


Q ss_pred             CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee-------ccceEEEEEecCCCEEEEEe-cCC---
Q 016458          204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-------EGDVNTVKFFPDGNRFGTGS-DDG---  272 (389)
Q Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~-~dg---  272 (389)
                      .|...|.+++|+| ++++|++|+.||.|++||.+ . .....+..|       ...+.+++|++++.++++.+ .||   
T Consensus       190 ~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~-~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~  266 (434)
T 2oit_A          190 PSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-L-QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE  266 (434)
T ss_dssp             CGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-C-CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred             CCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-C-cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence            6788999999999 78999999999999999998 3 444444433       23799999999887775433 443   


Q ss_pred             ---eEEEEECCCCce--eeEeeccCCC-----CCCCCeeEEEeCCCCCEEEEEec-CCcEEEEEcccce--E-EE-----
Q 016458          273 ---TCRLFDIRTGHQ--LQVYYQQHGE-----NEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAK--V-VL-----  333 (389)
Q Consensus       273 ---~i~i~d~~~~~~--~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~--~-~~-----  333 (389)
                         .+++|+++....  ...+......     ....+-..+.+-++.+++++++. .+.|.++......  . ..     
T Consensus       267 ~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~d~  346 (434)
T 2oit_A          267 TSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDS  346 (434)
T ss_dssp             SCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEECGG
T ss_pred             CCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEecccc
Confidence               389999986531  1111111111     11112223333366676666544 4446666543210  0 01     


Q ss_pred             ---eecCcCCCCCCCeeEEEECC---------------CCCeEEeeeCCCeeEEeecceeccc
Q 016458          334 ---NLGSLQNSHEGRITCLGLSA---------------DGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       334 ---~~~~~~~~~~~~v~~~~~~~---------------~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                         .+.......+..+..++++-               -...|..-+.||.+..    |.+-.
T Consensus       347 ~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~----~~~~~  405 (434)
T 2oit_A          347 SRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCP----FYMIN  405 (434)
T ss_dssp             GCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEE----EEEEE
T ss_pred             ccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEE----EEEEe
Confidence               11100012233344454432               1246788889999998    66654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=2.3e-24  Score=183.69  Aligned_cols=265  Identities=12%  Similarity=0.087  Sum_probs=195.0

Q ss_pred             CCCCcccCCCcceeeeeccccc-C-cEEEEEEcCCCCeE-EEEecCCcEEEEeCCCCCeeEEEeeCC-----CcEEEEEE
Q 016458           46 GRAPVSFGPTDLVCCRTLQGHA-G-KVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPC-----AWVMTCAF  117 (389)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~h~-~-~v~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~-----~~v~~~~~  117 (389)
                      ......|++...+....+.... . .+.+++|+|+++++ ++++.++.|.+||+.+++.+..+....     ..+..++|
T Consensus        10 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (337)
T 1pby_B           10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAAL   89 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEE
T ss_pred             CCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEE
Confidence            3445567777777777765333 2 48899999999866 455667899999999999887776432     24678999


Q ss_pred             CCCCcEEEEec------------CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEE
Q 016458          118 SPTGQSVACGG------------LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL  185 (389)
Q Consensus       118 ~~~~~~l~~~~------------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  185 (389)
                      +|++++++++.            .++.|.+||+.+++       ....+.. ...+.+++|+|++ ++++++  ++.|.+
T Consensus        90 s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------~~~~~~~-~~~~~~~~~s~dg-~~l~~~--~~~i~~  158 (337)
T 1pby_B           90 SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-------RRKAFEA-PRQITMLAWARDG-SKLYGL--GRDLHV  158 (337)
T ss_dssp             CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-------EEEEEEC-CSSCCCEEECTTS-SCEEEE--SSSEEE
T ss_pred             CCCCCEEEEEecccccccccccccCceEEEEECCCCc-------EEEEEeC-CCCcceeEECCCC-CEEEEe--CCeEEE
Confidence            99999998886            57999999997643       2333332 3457788999998 455555  688999


Q ss_pred             EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCC-----------------------ceEEEeCCCCCc
Q 016458          186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDS-----------------------TARLWDTRVASR  241 (389)
Q Consensus       186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg-----------------------~i~i~d~~~~~~  241 (389)
                      ||+.+++....+...   ....+   +.|+| ++..++..+ .++                       .|.+||+.+...
T Consensus       159 ~d~~~~~~~~~~~~~---~~~~~---~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  231 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQ---SWEAE---TYAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM  231 (337)
T ss_dssp             EETTTTEEEEEECST---TTTTT---TBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred             EECCCCcEeeeeecc---ccCCC---ceeCC-CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence            999999887766321   11122   26677 444443333 222                       468999987743


Q ss_pred             ceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcE
Q 016458          242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC  321 (389)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  321 (389)
                      ....+..+...+.+++|+|++++++++  ++.|.+||+.+++....+....      .+.+++|+|+|++|++++.++.|
T Consensus       232 ~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~i  303 (337)
T 1pby_B          232 AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH------SYYSVNVSTDGSTVWLGGALGDL  303 (337)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS------CCCEEEECTTSCEEEEESBSSEE
T ss_pred             eEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC------ceeeEEECCCCCEEEEEcCCCcE
Confidence            333445566678899999999999988  7999999999988777665432      36899999999999999999999


Q ss_pred             EEEEcccceEEEeec
Q 016458          322 YVWDTLLAKVVLNLG  336 (389)
Q Consensus       322 ~i~d~~~~~~~~~~~  336 (389)
                      .+||+.+++.+..+.
T Consensus       304 ~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          304 AAYDAETLEKKGQVD  318 (337)
T ss_dssp             EEEETTTCCEEEEEE
T ss_pred             EEEECcCCcEEEEEE
Confidence            999999998888773

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.94  E-value=3.4e-24  Score=183.63  Aligned_cols=277  Identities=10%  Similarity=0.070  Sum_probs=188.6

Q ss_pred             EEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC-CcEEEEEECCCCcEEE-EecCCCcEEEEeCCCCCCCCCCCc
Q 016458           72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLP  149 (389)
Q Consensus        72 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~  149 (389)
                      .+++++++.++++++.++.|.+||..+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++       
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~-------   76 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK-------   76 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE-------
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc-------
Confidence            45678888899999999999999999998888877654 2478899999998664 55678999999998744       


Q ss_pred             ceeeec-cc-----ccceEEEEEeeCCCcEEEEeeCC------------CeEEEEeCCCCeeE---EEecCcccCCCCCC
Q 016458          150 VSRMLS-GH-----KGYVSCCQYVPDEDTHLITSSGD------------QTCVLWDITTGLRT---SVFGGEFQSGHTAD  208 (389)
Q Consensus       150 ~~~~~~-~~-----~~~v~~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~---~~~~~~~~~~~~~~  208 (389)
                      ....+. .+     ...+..++|+|++ +++++++.+            +.|.+||+.+++..   ..+      .+...
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~  149 (349)
T 1jmx_B           77 NTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF------PMPRQ  149 (349)
T ss_dssp             EEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE------ECCSS
T ss_pred             EEEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccceeeec------cCCCc
Confidence            233332 22     2347789999998 567766654            89999999885432   222      23346


Q ss_pred             eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeecc------------------------ceEEEEEecCCCE
Q 016458          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG------------------------DVNTVKFFPDGNR  264 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------------------~i~~~~~~~~~~~  264 (389)
                      +.+++|+| ++++ ++++  +.|.+||..+. +....+..+..                        ....+++++++..
T Consensus       150 ~~~~~~s~-dg~l-~~~~--~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  224 (349)
T 1jmx_B          150 VYLMRAAD-DGSL-YVAG--PDIYKMDVKTG-KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ  224 (349)
T ss_dssp             CCCEEECT-TSCE-EEES--SSEEEECTTTC-CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred             ccceeECC-CCcE-EEcc--CcEEEEeCCCC-ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcC
Confidence            88999999 6664 4443  44999999876 45544432210                        2345666654422


Q ss_pred             EEEEecC-CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC-CCCEEEEEecCCcEEEEEcccceEEEeecCcCCCC
Q 016458          265 FGTGSDD-GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH  342 (389)
Q Consensus       265 l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  342 (389)
                      ....... ..+..+|..+++....-...    ....+..++|+| ++++++++  ++.|.+||+.+++....+.     .
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-----~  293 (349)
T 1jmx_B          225 DPATADLLYGYLSVDLKTGKTHTQEFAD----LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-----L  293 (349)
T ss_dssp             --CCCEEEEEEEEEETTTCCEEEEEEEE----CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-----C
T ss_pred             CccccccceeEEEEeccCCcEEeccccc----CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-----C
Confidence            1111101 11222444444322111111    122478999999 99999988  7899999999999887773     2


Q ss_pred             CCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          343 EGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       343 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      ...+.+++|+|+|++|++++.++.|.+    ||+.+++..
T Consensus       294 ~~~~~~~~~s~dg~~l~~~~~~~~v~v----~d~~~~~~~  329 (349)
T 1jmx_B          294 DHTYYCVAFDKKGDKLYLGGTFNDLAV----FNPDTLEKV  329 (349)
T ss_dssp             SSCCCEEEECSSSSCEEEESBSSEEEE----EETTTTEEE
T ss_pred             CCCccceEECCCCCEEEEecCCCeEEE----Eecccccee
Confidence            335789999999999999888999999    999988754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=1.6e-23  Score=179.76  Aligned_cols=252  Identities=10%  Similarity=0.024  Sum_probs=190.4

Q ss_pred             CcEEEEEECCCCcEEEEecC-------CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe
Q 016458          110 AWVMTCAFSPTGQSVACGGL-------DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT  182 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  182 (389)
                      ..+..++|+|+++++++++.       ++.|.+||..+++       ....+.. ...+..+.|+|++..++++...++.
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~-------~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~  112 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE-------VTQAIHN-DLKPFGATINNTTQTLWFGNTVNSA  112 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC-------EEEEEEE-SSCCCSEEEETTTTEEEEEETTTTE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe-------EEEEEec-CCCcceEEECCCCCEEEEEecCCCE
Confidence            45789999999998888774       5689999998754       3333332 3457789999998656677777899


Q ss_pred             EEEEeCCCCeeEEEecCcccC----CCCCCeeEEEeeCCCCcEEEEee--CCCceEEEeCCCCCcceeEEeeeccceEEE
Q 016458          183 CVLWDITTGLRTSVFGGEFQS----GHTADVLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFHGHEGDVNTV  256 (389)
Q Consensus       183 i~iwd~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~  256 (389)
                      |.+||..+++....+......    .....+.+++++| +++.+++++  .++.|.+||..+. +....+..+...+.++
T Consensus       113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~  190 (353)
T 3vgz_A          113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNI-KLKTAIQNTGKMSTGL  190 (353)
T ss_dssp             EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTT-EEEEEECCCCTTCCCC
T ss_pred             EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCC-ceEEEecCCCCccceE
Confidence            999999999887777421000    0011268899999 556555554  4788999999877 6666666456668899


Q ss_pred             EEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC-CcEEEEEcccceEEEee
Q 016458          257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-GDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       257 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~  335 (389)
                      +|+|+++++++++.++.|.+||+.+++....+..... .....+..++|+|+|+++++++.+ +.|.+||..+++....+
T Consensus       191 ~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~  269 (353)
T 3vgz_A          191 ALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDD-GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV  269 (353)
T ss_dssp             EEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCS-SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC-CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            9999999999999999999999999888776654221 123347889999999988777654 89999999999988877


Q ss_pred             cCcCCCCCCCeeEEEECCCCCeEEeee-CCCeeEEeecceecccCccc
Q 016458          336 GSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       336 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~W~~~~~~~~  382 (389)
                      .    ...  ..+++|+|+|+++++++ .++.|.+    ||+.+++..
T Consensus       270 ~----~~~--~~~~~~s~dg~~l~v~~~~~~~v~~----~d~~~~~~~  307 (353)
T 3vgz_A          270 A----APE--SLAVLFNPARNEAYVTHRQAGKVSV----IDAKSYKVV  307 (353)
T ss_dssp             E----CSS--CCCEEEETTTTEEEEEETTTTEEEE----EETTTTEEE
T ss_pred             E----cCC--CceEEECCCCCEEEEEECCCCeEEE----EECCCCeEE
Confidence            4    222  25699999999665555 6899999    999988764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=1.7e-23  Score=179.16  Aligned_cols=256  Identities=11%  Similarity=0.147  Sum_probs=174.3

Q ss_pred             cccccCcEEEEEEcCCCCeEEEEec---CCcEEEEeCCCCC--eeEEEeeCCCcEEEEEECCCCcEEEEec-CCCcEEEE
Q 016458           63 LQGHAGKVYSLDWTSERNRIVSASQ---DGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSIF  136 (389)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~~~~~---dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw  136 (389)
                      ...+...+..++|+|+|+ |++++.   ++.|.+|++.+++  .+..+..+...+..++|+|++++|++++ .++.|.+|
T Consensus        35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~  113 (347)
T 3hfq_A           35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM  113 (347)
T ss_dssp             EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence            345667788999999998 555544   6899999997765  3344445667788999999999888887 67999999


Q ss_pred             eCCCCCCCCCCCcceeeecc---------cccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC-CCeeEEEecCcccCCCC
Q 016458          137 NLNSPTDKDGNLPVSRMLSG---------HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLRTSVFGGEFQSGHT  206 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~  206 (389)
                      ++....    ..........         +...+.+++|+|++. ++++...++.|.+|++. ++.........  ....
T Consensus       114 ~~~~~g----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~--~~~g  186 (347)
T 3hfq_A          114 KIAADG----ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLT--MEAG  186 (347)
T ss_dssp             EECTTS----CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEE--CCTT
T ss_pred             EeCCCC----CeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEE--cCCC
Confidence            996421    1112222211         123488899999985 77777788999999998 45433221100  2233


Q ss_pred             CCeeEEEeeCCCCc-EEEEeeCCCceEEEeCCCCCcc---eeEEeeec------cceEEEEEecCCCEEE-EEecCCeEE
Q 016458          207 ADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVASRA---VRTFHGHE------GDVNTVKFFPDGNRFG-TGSDDGTCR  275 (389)
Q Consensus       207 ~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~------~~i~~~~~~~~~~~l~-~~~~dg~i~  275 (389)
                      ..+..++|+| +++ +++++..++.|.+|++......   ...+....      ..+..++|+|+|++|+ +...++.|.
T Consensus       187 ~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~  265 (347)
T 3hfq_A          187 FGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLA  265 (347)
T ss_dssp             CCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEE
T ss_pred             CCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEE
Confidence            4678899999 666 5555667889999998752122   22222222      3478899999999875 555689999


Q ss_pred             EEECCCC---ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC-CcEEEE--EcccceEE
Q 016458          276 LFDIRTG---HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-GDCYVW--DTLLAKVV  332 (389)
Q Consensus       276 i~d~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~--d~~~~~~~  332 (389)
                      +|++...   ..+..+...     ...+..++|+|+|++|++++.+ +.|.+|  |..+++..
T Consensus       266 v~~~~~~g~~~~~~~~~~~-----~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          266 VFAVTADGHLTLIQQISTE-----GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EEEECGGGCEEEEEEEECS-----SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EEEECCCCcEEEeEEEecC-----CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            9998732   222222221     1236899999999998888764 899999  44556554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.93  E-value=2e-24  Score=187.88  Aligned_cols=300  Identities=11%  Similarity=0.009  Sum_probs=201.7

Q ss_pred             cCCCcceeeeecccccCcEEE-----EEEcCCCCeEEEEec-CC--cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcE
Q 016458           52 FGPTDLVCCRTLQGHAGKVYS-----LDWTSERNRIVSASQ-DG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS  123 (389)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~-----~~~~~~~~~l~~~~~-dg--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  123 (389)
                      .++........+..|......     .+|+|||++|+.++. +|  .|.+||+.+++.......+...+...+|+|+++.
T Consensus        15 ~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~   94 (388)
T 3pe7_A           15 QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDA   94 (388)
T ss_dssp             ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSE
T ss_pred             ecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCE
Confidence            345556677788888877666     899999999998887 66  4888899888877666666555556789999999


Q ss_pred             EEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEE--EeeCCCcEEEE----------------------eeC
Q 016458          124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ--YVPDEDTHLIT----------------------SSG  179 (389)
Q Consensus       124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~----------------------~~~  179 (389)
                      |+.++.++.|++||+.++.       .......+...+....  +++++ .+++.                      ...
T Consensus        95 l~~~~~~~~l~~~d~~~g~-------~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (388)
T 3pe7_A           95 LFYVKDGRNLMRVDLATLE-------ENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKP  166 (388)
T ss_dssp             EEEEETTTEEEEEETTTCC-------EEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred             EEEEeCCCeEEEEECCCCc-------ceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCC
Confidence            9999999999999998754       2333344444444333  36776 44542                      234


Q ss_pred             CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC------CceEEEeCCCCCcceeEEeeec--c
Q 016458          180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGHE--G  251 (389)
Q Consensus       180 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~--~  251 (389)
                      +..|.+||+.+++.....      .+...+..+.|+|.+++.|+....+      ..|.++|....  ....+..+.  .
T Consensus       167 ~~~l~~~d~~~g~~~~l~------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~  238 (388)
T 3pe7_A          167 CCRLMRVDLKTGESTVIL------QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT--NMRKVKTHAEGE  238 (388)
T ss_dssp             CEEEEEEETTTCCEEEEE------EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC--CCEESCCCCTTE
T ss_pred             cceEEEEECCCCceEEee------cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC--ceEEeeeCCCCc
Confidence            578999999998765554      3455688999998445555555443      37778887643  333444343  3


Q ss_pred             ceEEEEEecCCCEEEEEec-CC----eEEEEECCCCceeeEeeccCCCCCC-CCeeEEEeCCCCCEEEEE---------e
Q 016458          252 DVNTVKFFPDGNRFGTGSD-DG----TCRLFDIRTGHQLQVYYQQHGENEI-PHVTSIAFSISGRLLFAG---------Y  316 (389)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~---------~  316 (389)
                      .+..++|+|||+.|+..+. ++    .|++||+.+++......... ..+. .......|+|||+.|+..         .
T Consensus       239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  317 (388)
T 3pe7_A          239 SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPA-CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE  317 (388)
T ss_dssp             EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECC-EEEEEECTTSSEEEEEECCC------------C
T ss_pred             ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCC-ceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence            5778899999998766543 22    39999999887543322111 0000 001223699999987754         4


Q ss_pred             cCCcEEEEEcccceEEEeecCcCCCCCC-----------CeeEEEECCCCCeEEeee-CCCeeEEeecceecc
Q 016458          317 SNGDCYVWDTLLAKVVLNLGSLQNSHEG-----------RITCLGLSADGSALCTGS-WDTNLKVNLGFWRVQ  377 (389)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~W~~~  377 (389)
                      .+..|++||+.+++.....     .+..           .+.+++|+|||+.|+.++ .+|...|    |.+.
T Consensus       318 ~~~~i~~~d~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l----~~~~  381 (388)
T 3pe7_A          318 NDPFLYVFNMKNGTQHRVA-----RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPAL----YLAT  381 (388)
T ss_dssp             CCCEEEEEETTTTEEEEEE-----ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEE----EEEE
T ss_pred             CCCEEEEEeccCCceEEec-----cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeE----EEEE
Confidence            4568999999887754332     2333           578899999999887766 4777777    6654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.93  E-value=1.4e-22  Score=174.37  Aligned_cols=271  Identities=10%  Similarity=0.090  Sum_probs=180.0

Q ss_pred             ccCcEEEEEEcCCCCeEEEEecC----CcEEEEeCCC--CCe--eEEEeeCCCcEEEEEECCCCcEEEEec-CCCcEEEE
Q 016458           66 HAGKVYSLDWTSERNRIVSASQD----GRLIVWNALT--SQK--THAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSIF  136 (389)
Q Consensus        66 h~~~v~~~~~~~~~~~l~~~~~d----g~v~iw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw  136 (389)
                      |...+..++|+|++++|++++.+    +.|.+|++..  ++.  +.....+......+++  ++++|++++ .++.|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            77788899999999999998876    7999998865  332  2333334556778888  777776665 58899999


Q ss_pred             eCCCCCCCCCCCcceeeec--------ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee------E------EE
Q 016458          137 NLNSPTDKDGNLPVSRMLS--------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR------T------SV  196 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~------~~  196 (389)
                      ++....... .........        .+...+.+++|+|++..++++...++.|.+|++.....      +      ..
T Consensus       126 ~~~~~g~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~  204 (361)
T 3scy_A          126 PIGQDGALL-PASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA  204 (361)
T ss_dssp             EBCTTSCBC-SCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred             EeCCCCcCc-ccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence            997533111 110011111        12234588999999854555666689999998875431      1      11


Q ss_pred             ecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCCceEEEeCCCCCcc--eeEEe---eeccceEEEEEecCCCEEEEEec
Q 016458          197 FGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVASRA--VRTFH---GHEGDVNTVKFFPDGNRFGTGSD  270 (389)
Q Consensus       197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~--~~~~~---~~~~~i~~~~~~~~~~~l~~~~~  270 (389)
                      ..    ......+..++|+| +++++++++ .++.|.+||+.++ ..  +..+.   .+......++|+|+|++|+++..
T Consensus       205 ~~----~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g-~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~  278 (361)
T 3scy_A          205 FK----VAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADG-MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR  278 (361)
T ss_dssp             EE----CCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETT-EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred             ee----cCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCC-ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence            11    23455678999999 777666655 6899999999854 22  22222   12234679999999999877665


Q ss_pred             C--CeEEEEECC--CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEc--ccceEEEeecCcCCCCC
Q 016458          271 D--GTCRLFDIR--TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDT--LLAKVVLNLGSLQNSHE  343 (389)
Q Consensus       271 d--g~i~i~d~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~--~~~~~~~~~~~~~~~~~  343 (389)
                      +  +.|.+|++.  +++.........    ...+..++|+|+|++|++++ .++.|.+|++  .+++......   ..+.
T Consensus       279 ~~~~~i~v~~~~~~~g~~~~~~~~~~----g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~---~~~~  351 (361)
T 3scy_A          279 LKADGVAIFKVDETNGTLTKVGYQLT----GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK---DIKV  351 (361)
T ss_dssp             SSSCEEEEEEECTTTCCEEEEEEEEC----SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC---CEEC
T ss_pred             CCCCEEEEEEEcCCCCcEEEeeEecC----CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce---eeeC
Confidence            4  899999986  344222211111    12378999999999998887 5688999654  4666554432   2345


Q ss_pred             CCeeEEEEC
Q 016458          344 GRITCLGLS  352 (389)
Q Consensus       344 ~~v~~~~~~  352 (389)
                      ..+.|+.|.
T Consensus       352 ~~p~~v~~~  360 (361)
T 3scy_A          352 DKPVCLKFV  360 (361)
T ss_dssp             SSEEEEEEE
T ss_pred             CCCeEEEEc
Confidence            578898885

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.93  E-value=5.1e-24  Score=186.80  Aligned_cols=225  Identities=14%  Similarity=0.087  Sum_probs=164.0

Q ss_pred             CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCC----CCCCcc----eeeecccccc
Q 016458           89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK----DGNLPV----SRMLSGHKGY  160 (389)
Q Consensus        89 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~----~~~~~~----~~~~~~~~~~  160 (389)
                      +.+++|+... .      .+...+..+++++++.++++++.++ +++|+.......    ......    ......+...
T Consensus        23 ~~vri~~~~~-~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (434)
T 2oit_A           23 KKVRIFDSPE-E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP   94 (434)
T ss_dssp             CEEECSCCCS-S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred             eeEEecCCcc-c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence            4688876431 1      2334578899999999999999888 888875421100    000000    0111235678


Q ss_pred             eEEEEEeeCCCcEEE----EeeCCCeEEEEeCCCC--------ee---EEEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458          161 VSCCQYVPDEDTHLI----TSSGDQTCVLWDITTG--------LR---TSVFGGEFQSGHTADVLSVSISGSNSRMFVSG  225 (389)
Q Consensus       161 v~~~~~~~~~~~~l~----~~~~dg~i~iwd~~~~--------~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  225 (389)
                      |.+++|+|++ ++|+    +++.|+.|++||+.++        +.   ...+     .+|...|.+++|+|..+++|+++
T Consensus        95 v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~v~~~p~~~~~las~  168 (434)
T 2oit_A           95 IHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL-----KDAGGMVIDMKWNPTVPSMVAVC  168 (434)
T ss_dssp             EEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC-----CSGGGSEEEEEECSSCTTEEEEE
T ss_pred             ccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc-----CCCCCceEEEEECCCCCCEEEEE
Confidence            9999999998 5677    7889999999998764        11   2222     56889999999999658999999


Q ss_pred             eCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC--CCCCCCeeEE
Q 016458          226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--ENEIPHVTSI  303 (389)
Q Consensus       226 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~i~~~  303 (389)
                      +.||.|++||+++. .......+|...|.+++|+|+|++|++|+.||.|++||++ +.....+..+..  ..+...+.++
T Consensus       169 s~Dg~v~iwD~~~~-~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v  246 (434)
T 2oit_A          169 LADGSIAVLQVTET-VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDV  246 (434)
T ss_dssp             ETTSCEEEEEESSS-EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEE
T ss_pred             ECCCeEEEEEcCCC-cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEE
Confidence            99999999999987 5555666788999999999999999999999999999998 555554433221  1122368999


Q ss_pred             EeCCCCCEEEEE-ecCC------cEEEEEcccc
Q 016458          304 AFSISGRLLFAG-YSNG------DCYVWDTLLA  329 (389)
Q Consensus       304 ~~~~~~~~l~~~-~~dg------~i~i~d~~~~  329 (389)
                      +|++++.++++. ..+|      .+++|++...
T Consensus       247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            999988877553 3443      3899998754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=1.4e-23  Score=197.20  Aligned_cols=320  Identities=9%  Similarity=-0.006  Sum_probs=207.0

Q ss_pred             CCCCcccCCCcceeeeecccccC---cEEEEEEcCCCCeEEEEec---------CCcEEEEeCCCCCeeEEEeeCCCcEE
Q 016458           46 GRAPVSFGPTDLVCCRTLQGHAG---KVYSLDWTSERNRIVSASQ---------DGRLIVWNALTSQKTHAIKLPCAWVM  113 (389)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~h~~---~v~~~~~~~~~~~l~~~~~---------dg~v~iw~~~~~~~~~~~~~~~~~v~  113 (389)
                      +.....|+.........+.+|..   .|.+++|||||++|++++.         ++.|++||+.+++.+..... ...+.
T Consensus        35 d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~~  113 (719)
T 1z68_A           35 DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-PRPIQ  113 (719)
T ss_dssp             TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-CSSBC
T ss_pred             CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-Ccccc
Confidence            34455677777777767766654   4999999999999998876         78999999998876211111 24588


Q ss_pred             EEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC--Ccceeeecccccc---------eEEEEEeeCCCcEEEEeeCCC-
Q 016458          114 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN--LPVSRMLSGHKGY---------VSCCQYVPDEDTHLITSSGDQ-  181 (389)
Q Consensus       114 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~--~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~~dg-  181 (389)
                      .++|+|+|+.|+.+. ++.|++|++.++......  ......+.++...         ..++.|+|+| +.|++++.|. 
T Consensus       114 ~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~  191 (719)
T 1z68_A          114 YLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDT  191 (719)
T ss_dssp             CEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECT
T ss_pred             cceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCC
Confidence            899999999999886 789999999875421000  0000011122211         2489999998 5677766442 


Q ss_pred             ---------------------------------eEEEEeCCCCeeE---EEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458          182 ---------------------------------TCVLWDITTGLRT---SVFGGEFQSGHTADVLSVSISGSNSRMFVSG  225 (389)
Q Consensus       182 ---------------------------------~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  225 (389)
                                                       .|++||+.++...   ..........+...+.+++|+| ++.++++.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~  270 (719)
T 1z68_A          192 DIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQW  270 (719)
T ss_dssp             TSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEE
T ss_pred             CCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEE
Confidence                                             7889999887642   1110000125677899999999 57777764


Q ss_pred             eCCC----ceEEEe----CCCCCcceeEE----eeeccceE-----EEEEecCCCEEEE--EecCC--eEEEEECCCCce
Q 016458          226 SCDS----TARLWD----TRVASRAVRTF----HGHEGDVN-----TVKFFPDGNRFGT--GSDDG--TCRLFDIRTGHQ  284 (389)
Q Consensus       226 ~~dg----~i~i~d----~~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~l~~--~~~dg--~i~i~d~~~~~~  284 (389)
                      ...+    .|.+||    ..++ +....+    ..|...+.     .+.|+|||+.|+.  ...+|  .|.+||+.+++ 
T Consensus       271 ~~~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-  348 (719)
T 1z68_A          271 LKRVQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-  348 (719)
T ss_dssp             EESSTTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-
T ss_pred             eccccCeEEEEEEcccCCCCCC-ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-
Confidence            4332    488899    6654 333222    35666666     8899999996654  44555  57777877665 


Q ss_pred             eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC-----CcEEEEEccc--ce-EEEeecCcCCCCCCCeeEEEECCCCC
Q 016458          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLL--AK-VVLNLGSLQNSHEGRITCLGLSADGS  356 (389)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~--~~-~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (389)
                      ...+....     ..+..+.++ +++.|+..+.+     +..++|.+..  +. ....+.....+|...+..+.|+|+++
T Consensus       349 ~~~lt~~~-----~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~  422 (719)
T 1z68_A          349 AIQITSGK-----WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAK  422 (719)
T ss_dssp             CEECSCSS-----SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGS
T ss_pred             eEecccCc-----eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCC
Confidence            33332211     136677777 77777766654     7888888764  32 12333211123666788999999998


Q ss_pred             eEEee-eCC--CeeEEeecceecccCcc
Q 016458          357 ALCTG-SWD--TNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       357 ~l~~~-~~d--g~i~i~~~~W~~~~~~~  381 (389)
                      +++.. +.+  ..+.+    |++.+|+.
T Consensus       423 ~l~~~~s~~~~p~~~l----~d~~~g~~  446 (719)
T 1z68_A          423 YYALVCYGPGIPISTL----HDGRTDQE  446 (719)
T ss_dssp             SEEEEECCBSSCEEEE----ECSSSCCE
T ss_pred             EEEEEcCCCCCCeEEE----EECCCCCE
Confidence            87753 333  45677    99888763

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=9.9e-24  Score=198.12  Aligned_cols=276  Identities=12%  Similarity=0.076  Sum_probs=191.1

Q ss_pred             EEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCC---cEEEEEECCCCcEEEEecC---------CCcEEEEeCC
Q 016458           72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA---WVMTCAFSPTGQSVACGGL---------DSVCSIFNLN  139 (389)
Q Consensus        72 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------dg~i~vw~~~  139 (389)
                      +++|+|+++++++ +.|++|++||..+++....+..+..   .+.+++|||||++|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6899999965554 4699999999999988776665533   3889999999999998876         6899999998


Q ss_pred             CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC------------
Q 016458          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA------------  207 (389)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------  207 (389)
                      ++....     ...+   ...+..++|+|+| +.|+.+. ++.|++||+.++.......    .++..            
T Consensus        99 ~g~~~~-----~~~l---~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~~l~~----~~~~~~v~~g~~~~v~~  164 (719)
T 1z68_A           99 NGEFVR-----GNEL---PRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPFQITF----NGRENKIFNGIPDWVYE  164 (719)
T ss_dssp             TTEECC-----SSCC---CSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCC----CCBTTTEEESSCCHHHH
T ss_pred             CCcccc-----ceec---CcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcEEEec----CCCcCCeEcccccceee
Confidence            754200     0111   2457889999998 5666664 7899999999887654331    12211            


Q ss_pred             -----CeeEEEeeCCCCcEEEEeeCCC----------------------------------ceEEEeCCCCCcce-----
Q 016458          208 -----DVLSVSISGSNSRMFVSGSCDS----------------------------------TARLWDTRVASRAV-----  243 (389)
Q Consensus       208 -----~v~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~-----  243 (389)
                           ...+++|+| +++.|++++.|.                                  .|++||+.++ ...     
T Consensus       165 ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~-~~~~~~~~  242 (719)
T 1z68_A          165 EEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP-AYVGPQEV  242 (719)
T ss_dssp             HHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH-HHHCCEEC
T ss_pred             eecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC-CccceeEc
Confidence                 125899999 888888877542                                  7889999866 321     


Q ss_pred             ---eEEeeeccceEEEEEecCCCEEEEEecC----CeEEEEE----CCCCceeeEee---ccCCCCCCCCee-----EEE
Q 016458          244 ---RTFHGHEGDVNTVKFFPDGNRFGTGSDD----GTCRLFD----IRTGHQLQVYY---QQHGENEIPHVT-----SIA  304 (389)
Q Consensus       244 ---~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~---~~~~~~~~~~i~-----~~~  304 (389)
                         ..+.+|...+..++|+||++++++....    ..|.+||    +.+++......   ..+    ...+.     .+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~  318 (719)
T 1z68_A          243 PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR----TGWAGGFFVSTPV  318 (719)
T ss_dssp             CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS----SSCSSSSSCCCCE
T ss_pred             cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC----CceEccccCCccE
Confidence               1123477789999999998777764432    3488999    77765544331   111    11243     788


Q ss_pred             eCCCCCEEEE--EecCC--cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC-----CeeEEeeccee
Q 016458          305 FSISGRLLFA--GYSNG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-----TNLKVNLGFWR  375 (389)
Q Consensus       305 ~~~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~W~  375 (389)
                      |+|||+.++.  +..+|  .|.+||+.+++ ...+    ..+...+..+.++ +++.|+..+.+     +..++    |.
T Consensus       319 ~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~l----t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l----~~  388 (719)
T 1z68_A          319 FSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQI----TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNI----YR  388 (719)
T ss_dssp             ECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEEC----SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEE----EE
T ss_pred             ECCCCCeEEEEEEccCCceEEEEEECCCCc-eEec----ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEE----EE
Confidence            9999996554  44555  56777876665 3344    3455567777777 78777776655     78888    88


Q ss_pred             ccc
Q 016458          376 VQE  378 (389)
Q Consensus       376 ~~~  378 (389)
                      +..
T Consensus       389 ~~~  391 (719)
T 1z68_A          389 ISI  391 (719)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=3.3e-23  Score=189.74  Aligned_cols=236  Identities=10%  Similarity=0.029  Sum_probs=173.0

Q ss_pred             CCcEEEEEECCCCcEEEEecC-CCcEEEEeCCCCCCCCCCCcceeeecccc-cceEEEEEeeCCCcEEEEeeC---CCeE
Q 016458          109 CAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSG---DQTC  183 (389)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~---dg~i  183 (389)
                      ..+|.+++|+|||+.|++++. ||.+.||++.++.        ...+..|. ..+..+.|+|+  +++++++.   +...
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--------~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~   90 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--------TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQH   90 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--------EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC--------cEeeecccccccccccCCCC--eEEEEeccCCCCcce
Confidence            356999999999999998877 9999999985532        23344444 68899999997  56776664   4545


Q ss_pred             EEEeCCC---CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec
Q 016458          184 VLWDITT---GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP  260 (389)
Q Consensus       184 ~iwd~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~  260 (389)
                      .+|.+..   +... .+      .....+...+|+|+....+++...++.+.+||+.++ +.. .+..+..  .+++|+|
T Consensus        91 ~l~~~~~~~~g~~~-~l------~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g-~~~-~l~~~~~--~~~~~sp  159 (582)
T 3o4h_A           91 ALFKVNTSRPGEEQ-RL------EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGG-GLR-ELARLPG--FGFVSDI  159 (582)
T ss_dssp             EEEEEETTSTTCCE-EC------TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETT-EEE-EEEEESS--CEEEEEE
T ss_pred             EEEEEeccCCCccc-cc------cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCC-cEE-EeecCCC--ceEEECC
Confidence            5554432   2222 32      122234466888855455555555666679999866 333 3333433  8899999


Q ss_pred             CCCEEEEEecC----CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC--cEEEEEcccceEEEe
Q 016458          261 DGNRFGTGSDD----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--DCYVWDTLLAKVVLN  334 (389)
Q Consensus       261 ~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~  334 (389)
                      ||++|++++.+    +.|++||+.+++.. .+....     ..+..++|+|||+.|+++..++  .|++||+.+++.. .
T Consensus       160 DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~-----~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~  232 (582)
T 3o4h_A          160 RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGE-----GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D  232 (582)
T ss_dssp             ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSS-----CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E
T ss_pred             CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCC-----CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E
Confidence            99999988877    78999999887754 333222     2479999999999999888888  8999999988877 5


Q ss_pred             ecCcCCCCCCCeeEEE--------ECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          335 LGSLQNSHEGRITCLG--------LSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       335 ~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      +    ..|...+..++        |+|||.++++++.||.+++    |++  |+..
T Consensus       233 ~----~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l----~~~--g~~~  278 (582)
T 3o4h_A          233 L----ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAV----FID--GERV  278 (582)
T ss_dssp             C----CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEE----EET--TEEE
T ss_pred             c----cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEE----EEE--CCee
Confidence            5    67777777777        9999999999999999999    998  6544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.91  E-value=7.5e-22  Score=169.91  Aligned_cols=285  Identities=9%  Similarity=0.047  Sum_probs=184.0

Q ss_pred             eEEEEecC--CcEEEEeC--CCCCeeEEEe---eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC-CCCCCCCCCccee
Q 016458           81 RIVSASQD--GRLIVWNA--LTSQKTHAIK---LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN-SPTDKDGNLPVSR  152 (389)
Q Consensus        81 ~l~~~~~d--g~v~iw~~--~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~-~~~~~~~~~~~~~  152 (389)
                      .|++|+..  +.|.+|++  .+++....-.   .....+..++|+|++++|++++.+ .|.+|++. ++.       ...
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~-------~~~   75 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTE-------IVH   75 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTE-------EEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCC-------EEE
Confidence            35555543  46887765  4454332211   123467899999999999988887 99999986 432       111


Q ss_pred             eecc-cccceEEEEEeeCCCc-EEEEee-------------CCCeEEEEeCC-CCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458          153 MLSG-HKGYVSCCQYVPDEDT-HLITSS-------------GDQTCVLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISG  216 (389)
Q Consensus       153 ~~~~-~~~~v~~~~~~~~~~~-~l~~~~-------------~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~  216 (389)
                      .... ..+.+.+++|+|++.. +++++.             .+|.+.+|++. ++.....+... ...+...+.+++|+|
T Consensus        76 ~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~sp  154 (365)
T 1jof_A           76 EASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY-EYQENTGIHGMVFDP  154 (365)
T ss_dssp             EEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE-ECCTTCCEEEEEECT
T ss_pred             eeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE-EeCCCCcceEEEECC
Confidence            1110 0123455889999843 344553             68999999997 45544333100 012456789999999


Q ss_pred             CCCcEEEEee-CCCceEEEeCC-CCCcc--eeEEe--eeccceEEEEEecCCCEEEEEec-CCeEEEEECC--CCceee-
Q 016458          217 SNSRMFVSGS-CDSTARLWDTR-VASRA--VRTFH--GHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIR--TGHQLQ-  286 (389)
Q Consensus       217 ~~~~~l~~~~-~dg~i~i~d~~-~~~~~--~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~~-  286 (389)
                       ++++++++. .++.|++||+. ++ +.  +..+.  .|...+..++|+|+|+++++++. ++.|.+|++.  +++... 
T Consensus       155 -dG~~l~~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~  232 (365)
T 1jof_A          155 -TETYLYSADLTANKLWTHRKLASG-EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYT  232 (365)
T ss_dssp             -TSSEEEEEETTTTEEEEEEECTTS-CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred             -CCCEEEEEcCCCCEEEEEEECCCC-CEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEc
Confidence             777676655 46799999997 44 32  22232  13556899999999999988774 7899999865  454321 


Q ss_pred             --EeeccCC--CCCCC------CeeEEE-eCCCCCEEEEEecCC------cEEEEEcc-cceEEEeecCcCCCCCCCeeE
Q 016458          287 --VYYQQHG--ENEIP------HVTSIA-FSISGRLLFAGYSNG------DCYVWDTL-LAKVVLNLGSLQNSHEGRITC  348 (389)
Q Consensus       287 --~~~~~~~--~~~~~------~i~~~~-~~~~~~~l~~~~~dg------~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~  348 (389)
                        .+.....  ..+..      .+..++ |+|||++|++++.+.      .|.+|++. +++........ ..+...+..
T Consensus       233 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~-~~~~~~~~~  311 (365)
T 1jof_A          233 HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS-PTPTSGGHS  311 (365)
T ss_dssp             EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE-ECSSCCTTC
T ss_pred             cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee-ecCCCCccc
Confidence              1211110  01111      378899 999999988776433      79999996 56544311000 234455678


Q ss_pred             EEECC---CCCeEEeeeCC-CeeEEeecceecccCcc
Q 016458          349 LGLSA---DGSALCTGSWD-TNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       349 ~~~~~---~~~~l~~~~~d-g~i~i~~~~W~~~~~~~  381 (389)
                      ++|+|   ||++|++++.+ +.|.+    |+++.+.+
T Consensus       312 ~a~sp~~~dg~~l~v~~~~~~~v~v----~~~~~~~l  344 (365)
T 1jof_A          312 NAVSPCPWSDEWMAITDDQEGWLEI----YRWKDEFL  344 (365)
T ss_dssp             CCEEECTTCTTEEEEECSSSCEEEE----EEEETTEE
T ss_pred             ceecCCCcCCCEEEEEEcCCCeEEE----EEEchhhC
Confidence            99999   89999998875 89999    99987654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=9.4e-22  Score=168.39  Aligned_cols=275  Identities=13%  Similarity=0.035  Sum_probs=184.8

Q ss_pred             CCCCCcccCCCcceeeeeccccc-CcEEEEEEcCCCCeEE-EEecCCcEEEEeCCCCCeeEEEeeCC------CcEEEEE
Q 016458           45 QGRAPVSFGPTDLVCCRTLQGHA-GKVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPC------AWVMTCA  116 (389)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~l~~h~-~~v~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~------~~v~~~~  116 (389)
                      .......|++...+....+..+. ..+..++|+|++++++ ++..++.|.+||+.+++....+..+.      ..+..++
T Consensus        19 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~   98 (349)
T 1jmx_B           19 YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFA   98 (349)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEE
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceE
Confidence            34456678887777777776554 2578999999998655 55578999999999998887776443      2377899


Q ss_pred             ECCCCcEEEEecCC------------CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEE
Q 016458          117 FSPTGQSVACGGLD------------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV  184 (389)
Q Consensus       117 ~~~~~~~l~~~~~d------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  184 (389)
                      |+|+|+++++++.+            +.|.+||+.++...    ....... +...+.+++|+|++.  +++++.  .|.
T Consensus        99 ~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~~~-~~~~~~~~~~s~dg~--l~~~~~--~i~  169 (349)
T 1jmx_B           99 ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA----KPVRTFP-MPRQVYLMRAADDGS--LYVAGP--DIY  169 (349)
T ss_dssp             ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB----CCSEEEE-CCSSCCCEEECTTSC--EEEESS--SEE
T ss_pred             ECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc----ceeeecc-CCCcccceeECCCCc--EEEccC--cEE
Confidence            99999999998865            89999999864311    1122222 334688899999984  444433  499


Q ss_pred             EEeCCCCeeEEEecCcccCCC---------------CC----CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeE
Q 016458          185 LWDITTGLRTSVFGGEFQSGH---------------TA----DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT  245 (389)
Q Consensus       185 iwd~~~~~~~~~~~~~~~~~~---------------~~----~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  245 (389)
                      +||+.+++....+........               ..    ....++++++.............+..+|..+.......
T Consensus       170 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (349)
T 1jmx_B          170 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE  249 (349)
T ss_dssp             EECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE
T ss_pred             EEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc
Confidence            999999988776632110000               00    22334444311100000000111222444443222223


Q ss_pred             EeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEE
Q 016458          246 FHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW  324 (389)
Q Consensus       246 ~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  324 (389)
                      +..+...+..++|+| ++++++++  ++.|.+||+.+++....+....      .+.+++|+|+|++|++++.++.|.+|
T Consensus       250 ~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~v~v~  321 (349)
T 1jmx_B          250 FADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH------TYYCVAFDKKGDKLYLGGTFNDLAVF  321 (349)
T ss_dssp             EEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS------CCCEEEECSSSSCEEEESBSSEEEEE
T ss_pred             cccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC------CccceEECCCCCEEEEecCCCeEEEE
Confidence            333556788999999 99999988  8899999999988777665432      26789999999988888889999999


Q ss_pred             EcccceEEEeec
Q 016458          325 DTLLAKVVLNLG  336 (389)
Q Consensus       325 d~~~~~~~~~~~  336 (389)
                      |+.+++.+..+.
T Consensus       322 d~~~~~~~~~~~  333 (349)
T 1jmx_B          322 NPDTLEKVKNIK  333 (349)
T ss_dssp             ETTTTEEEEEEE
T ss_pred             eccccceeeeee
Confidence            999999888773

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.90  E-value=2.2e-22  Score=175.42  Aligned_cols=288  Identities=13%  Similarity=0.016  Sum_probs=187.6

Q ss_pred             CCCcceeeeecccccCc-----EEEEEEcCCCCeEEEEecC---CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458           53 GPTDLVCCRTLQGHAGK-----VYSLDWTSERNRIVSASQD---GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV  124 (389)
Q Consensus        53 ~~~~~~~~~~l~~h~~~-----v~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  124 (389)
                      ++......+.+..+...     +.+++|+|||++|+.+...   ..|.+||+.+++.......+......+.|+|+|+.|
T Consensus        16 d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l   95 (396)
T 3c5m_A           16 DSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAF   95 (396)
T ss_dssp             CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEE
T ss_pred             cCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEE
Confidence            44455555666655443     7889999999998876543   468888988876544333232222337899999999


Q ss_pred             EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEE-------------------EEEeeCCCcEEEEe-----eCC
Q 016458          125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC-------------------CQYVPDEDTHLITS-----SGD  180 (389)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-----~~d  180 (389)
                      +.++.++.|++|++.++.       .......+......                   +.|+|++. .++.+     ..+
T Consensus        96 ~~~~~~~~l~~~d~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~  167 (396)
T 3c5m_A           96 FYVKNELNLMKVDLETLE-------EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPT  167 (396)
T ss_dssp             EEEETTTEEEEEETTTCC-------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCC
T ss_pred             EEEEcCCcEEEEECCCCC-------cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCc
Confidence            999989999999998754       22222222221111                   24566653 33322     466


Q ss_pred             CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC------CceEEEeCCCCCcceeEEeee--ccc
Q 016458          181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGH--EGD  252 (389)
Q Consensus       181 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~~  252 (389)
                      ..|.+||+.+++.....      .+...+..+.|+|.++..|+..+.+      ..|.+||+... . ...+..+  ...
T Consensus       168 ~~l~~~d~~~g~~~~~~------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~-~~~l~~~~~~~~  239 (396)
T 3c5m_A          168 CRLIKVDIETGELEVIH------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS-N-VRKIKEHAEGES  239 (396)
T ss_dssp             EEEEEEETTTCCEEEEE------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC-C-CEESSCCCTTEE
T ss_pred             ceEEEEECCCCcEEeec------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC-c-eeEeeccCCCcc
Confidence            78999999988765554      3456788999998445555544433      46888888644 2 2233222  235


Q ss_pred             eEEEEEecCCCEEEEEecC-----CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC-CCCEEEEEe----------
Q 016458          253 VNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGY----------  316 (389)
Q Consensus       253 i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~----------  316 (389)
                      +..++|+|+|++|+.++.+     +.|++||+.+++....... .      ... +.|+| +|+++++++          
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~------~~~-~~~s~~dg~~l~~~~~~~p~~~~~~  311 (396)
T 3c5m_A          240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P------PCS-HLMSNFDGSLMVGDGCDAPVDVADA  311 (396)
T ss_dssp             EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C------SEE-EEEECSSSSEEEEEECCC-------
T ss_pred             ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C------CCC-CCccCCCCceEEEecCCcceeeccc
Confidence            7889999999988777654     4599999988765443221 1      133 88999 999888754          


Q ss_pred             ------cCCcEEEEEcccceEEEeecCcCCCCCC-----------CeeEEEECCCCCeEEeeeC-CCeeEE
Q 016458          317 ------SNGDCYVWDTLLAKVVLNLGSLQNSHEG-----------RITCLGLSADGSALCTGSW-DTNLKV  369 (389)
Q Consensus       317 ------~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~-dg~i~i  369 (389)
                            .++.|++||+.+++.. .+    ..+..           .+..++|+|||+.|+.++. ++...|
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~~-~l----~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l  377 (396)
T 3c5m_A          312 DSYNIENDPFLYVLNTKAKSAQ-KL----CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAI  377 (396)
T ss_dssp             ---CCCCCCEEEEEETTTTBCC-EE----EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEE
T ss_pred             cccccCCCCcEEEEecccCceE-Ec----cCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceE
Confidence                  2468999999877643 22    12222           2567889999998887765 566666

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.90  E-value=1.5e-20  Score=160.94  Aligned_cols=284  Identities=12%  Similarity=0.073  Sum_probs=201.1

Q ss_pred             CCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEe----------cCCcEEEEeCCCCCeeEEEeeC------CCc
Q 016458           48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLP------CAW  111 (389)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~------~~~  111 (389)
                      ....|++...+...++..+..+  .++|+||++++++++          .++.|.+||..+++.+..+...      ...
T Consensus        32 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~  109 (361)
T 2oiz_A           32 RVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNY  109 (361)
T ss_dssp             EEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCC
T ss_pred             eEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCC
Confidence            3446677777777788877766  899999999999886          3678999999999998888754      234


Q ss_pred             EEEEEECCCCcEEEEecC--CCcEEEEeCCCCCCCCCCCcceee-ecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeC
Q 016458          112 VMTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI  188 (389)
Q Consensus       112 v~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  188 (389)
                      ...++++|+|++|+++..  ++.|.+||+.+.+       .... +. .. ....+.+.|++...+++.+.||.+.+|++
T Consensus       110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~-------~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~  180 (361)
T 2oiz_A          110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD-------YVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINL  180 (361)
T ss_dssp             GGGEEECTTSSEEEEEEESSSEEEEEEETTTTE-------EEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEE
T ss_pred             cceEEECCCCCEEEEECCCCCCeEEEEECCCCc-------EEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEE
Confidence            667999999999998864  5899999998743       3333 22 21 22335677877678889999999999998


Q ss_pred             CC-CeeEEEecC-cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcce-eEEee------e----ccceEE
Q 016458          189 TT-GLRTSVFGG-EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHG------H----EGDVNT  255 (389)
Q Consensus       189 ~~-~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~------~----~~~i~~  255 (389)
                      .. ++....... ........+ ..+.+.+ ++..++..+.++.+.++|+......+ ..+..      +    ......
T Consensus       181 ~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~  258 (361)
T 2oiz_A          181 GEDGKVASQSRSKQMFSVKDDP-IFIAPAL-DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNL  258 (361)
T ss_dssp             CTTSSEEEEEECCCCSCTTTSC-BCSCCEE-CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSC
T ss_pred             CCCCcEeeeccccceEcCCCCc-eEEEecc-cCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeE
Confidence            65 444322110 000111122 1223345 44555666678999999987542211 11110      0    111223


Q ss_pred             EEEecCCCEEEEEec-----------CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEE
Q 016458          256 VKFFPDGNRFGTGSD-----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW  324 (389)
Q Consensus       256 ~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  324 (389)
                      ++|+|+++.++++..           .+.|.+||+.+++.+..+....       ...++|+|+|++|++++. +.|.+|
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-------p~~ia~spdg~~l~v~n~-~~v~v~  330 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-------ALSMTIDQQRNLMLTLDG-GNVNVY  330 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-------CCEEEEETTTTEEEEECS-SCEEEE
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-------eeEEEECCCCCEEEEeCC-CeEEEE
Confidence            789999888877653           3589999999998888775532       589999999999999887 999999


Q ss_pred             Ecccc--eEEEeecCcCCCCCCCeeEEEECCCCC
Q 016458          325 DTLLA--KVVLNLGSLQNSHEGRITCLGLSADGS  356 (389)
Q Consensus       325 d~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (389)
                      |..++  +.+..+    ..+......++++|+|.
T Consensus       331 D~~t~~l~~~~~i----~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          331 DISQPEPKLLRTI----EGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ECSSSSCEEEEEE----TTSCSSEEEEEECCCSC
T ss_pred             ECCCCcceeeEEe----ccCCCCcEEEEecCCCC
Confidence            99999  999887    46677788999999985

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.89  E-value=6.1e-21  Score=163.42  Aligned_cols=267  Identities=11%  Similarity=0.067  Sum_probs=187.6

Q ss_pred             cCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC----------CCcEEEEeCCCCCCCCCCCcceeeecc
Q 016458           87 QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL----------DSVCSIFNLNSPTDKDGNLPVSRMLSG  156 (389)
Q Consensus        87 ~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~~~~~  156 (389)
                      .|+.|.+||..+++.+..+..+..+  .++|+|++++++++..          ++.|.+||..+.+       ....+..
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~-------~~~~i~~   99 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT-------FEKEISL   99 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC-------EEEEEEE
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc-------EEEEEEc
Confidence            4789999999999998888776554  8999999999998862          5679999987643       3333322


Q ss_pred             ------cccceEEEEEeeCCCcEEEEee-C-CCeEEEEeCCCCeeEEE-ecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458          157 ------HKGYVSCCQYVPDEDTHLITSS-G-DQTCVLWDITTGLRTSV-FGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (389)
Q Consensus       157 ------~~~~v~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (389)
                            +......++++|++ ++|+++. . ++.|.+||+.+++.+.. +.     .  .....+.+.|.....+++.+.
T Consensus       100 ~~~~~~~g~~p~~i~~spdg-~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-----~--~~~~~v~~~p~~~~~~~~~~~  171 (361)
T 2oiz_A          100 PPKRVQGLNYDGLFRQTTDG-KFIVLQNASPATSIGIVDVAKGDYVEDVTA-----A--AGCWSVIPQPNRPRSFMTICG  171 (361)
T ss_dssp             CTTBCCBCCCGGGEEECTTS-SEEEEEEESSSEEEEEEETTTTEEEEEEGG-----G--TTEEEEEECTTSSSEEEEEET
T ss_pred             CccccccCCCcceEEECCCC-CEEEEECCCCCCeEEEEECCCCcEEEEEec-----C--CCcceeEEcCCCCeeEEEECC
Confidence                  22346678999998 5666654 3 68999999999988777 52     1  122335567755578888899


Q ss_pred             CCceEEEeCCCCCcceeEE------eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceee--EeeccC-----CC
Q 016458          228 DSTARLWDTRVASRAVRTF------HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ--VYYQQH-----GE  294 (389)
Q Consensus       228 dg~i~i~d~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~-----~~  294 (389)
                      ||.+.+|+.....+.....      .....+ ..+.++|++..++..+.++.|.++|+.......  .+....     ..
T Consensus       172 dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~  250 (361)
T 2oiz_A          172 DGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKN  250 (361)
T ss_dssp             TSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTT
T ss_pred             CCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccc
Confidence            9999999986533333111      111122 233446778788888889999999987554221  111000     00


Q ss_pred             CCCCCeeEEEeCCCCCEEEEEec-----------CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458          295 NEIPHVTSIAFSISGRLLFAGYS-----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  363 (389)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  363 (389)
                      ........++|+|+++.++++..           .+.|.+||+.+++.+..+    ..+.  +.+++|+|||++|++++.
T Consensus       251 ~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i----~~~~--p~~ia~spdg~~l~v~n~  324 (361)
T 2oiz_A          251 WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI----PGRD--ALSMTIDQQRNLMLTLDG  324 (361)
T ss_dssp             CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE----ECTT--CCEEEEETTTTEEEEECS
T ss_pred             cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE----ecCC--eeEEEECCCCCEEEEeCC
Confidence            00001223789999988887654           347999999999999988    4454  899999999999998887


Q ss_pred             CCeeEEeecceecccC--ccc
Q 016458          364 DTNLKVNLGFWRVQEG--ALS  382 (389)
Q Consensus       364 dg~i~i~~~~W~~~~~--~~~  382 (389)
                       +.|.+    ||..++  ++.
T Consensus       325 -~~v~v----~D~~t~~l~~~  340 (361)
T 2oiz_A          325 -GNVNV----YDISQPEPKLL  340 (361)
T ss_dssp             -SCEEE----EECSSSSCEEE
T ss_pred             -CeEEE----EECCCCcceee
Confidence             99999    999999  654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.89  E-value=4.4e-21  Score=178.52  Aligned_cols=299  Identities=13%  Similarity=0.062  Sum_probs=200.2

Q ss_pred             eeecccccCcEEEEEEcCCCCeEEEE--ecCCcEEEEeCCCCCeeEEEeeCCCcEE---------EEEEC--CCCcE-EE
Q 016458           60 CRTLQGHAGKVYSLDWTSERNRIVSA--SQDGRLIVWNALTSQKTHAIKLPCAWVM---------TCAFS--PTGQS-VA  125 (389)
Q Consensus        60 ~~~l~~h~~~v~~~~~~~~~~~l~~~--~~dg~v~iw~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~  125 (389)
                      ...+.+|...|..++|+++.-++++.  +.++...||....+.....+..+...+.         ...|+  |||+. |+
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            34677899999999999886666666  5588999999655555666666655555         55555  99998 77


Q ss_pred             EecC-CCcEEEEeCC--C-CCCCCCCCcceeeecc-----cccceEEEEEeeCCCcEEEEeeCC----------CeEEEE
Q 016458          126 CGGL-DSVCSIFNLN--S-PTDKDGNLPVSRMLSG-----HKGYVSCCQYVPDEDTHLITSSGD----------QTCVLW  186 (389)
Q Consensus       126 ~~~~-dg~i~vw~~~--~-~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~iw  186 (389)
                      .++. +..|.++++.  . +.        ...+..     |...+..++|+|+| +.|++++.+          ..|++|
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~--------~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~  166 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAV--------PRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAV  166 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCC--------CEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred             EEECCCCeEEEEcCCCCCCCC--------CEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEE
Confidence            6654 5566666665  1 21        223333     66788999999998 567776665          589999


Q ss_pred             eCCC------CeeEEEecCcccC-CCCCCeeEEEeeCCCCcEEEEeeCC--------CceEEEeCCC-CC--cceeEEee
Q 016458          187 DITT------GLRTSVFGGEFQS-GHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRV-AS--RAVRTFHG  248 (389)
Q Consensus       187 d~~~------~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~-~~--~~~~~~~~  248 (389)
                      |+.+      +.. ..+     . .+...+..++|+| +++.|+.++.+        ..|++||+.. +.  ........
T Consensus       167 ~~~~~~~~~~~~~-~~l-----~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~  239 (662)
T 3azo_A          167 PLDGSAAADRSAV-REL-----SDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG  239 (662)
T ss_dssp             ETTSTTTTCGGGS-EES-----SCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             ECCCCccccCCce-eEE-----EecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence            9988      543 333     3 4456788899999 77888776644        3799999983 31  23333334


Q ss_pred             eccceEEEEEecCCCEEEEEecCC--eEEEEECCCCceeeEeeccCCC---CCCCCeeEEEeCCCCCEEEEEecCCcEEE
Q 016458          249 HEGDVNTVKFFPDGNRFGTGSDDG--TCRLFDIRTGHQLQVYYQQHGE---NEIPHVTSIAFSISGRLLFAGYSNGDCYV  323 (389)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (389)
                      |...+..++|+|||++++++..++  .|.+||+.+++...........   .-...+..++|+|+++++++++. +.++|
T Consensus       240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l  318 (662)
T 3azo_A          240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL  318 (662)
T ss_dssp             TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred             CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence            467899999999999888888888  6777777666543332211110   00011467899999999999988 99999


Q ss_pred             E--EcccceEEEeecCcCCCCCCCeeEE-EECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          324 W--DTLLAKVVLNLGSLQNSHEGRITCL-GLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       324 ~--d~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      |  |+.+++ +..+    ..|...+..+ +++++.-++++++.+....++.  |++.++++.
T Consensus       319 ~~~d~~~~~-~~~l----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~--~d~~~g~~~  373 (662)
T 3azo_A          319 GILDPESGE-LVDA----AGPWTEWAATLTVSGTRAVGVAASPRTAYEVVE--LDTVTGRAR  373 (662)
T ss_dssp             EEEETTTTE-EEEC----CSSCCEEEEEEEEETTEEEEEEEETTEEEEEEE--EETTTCCEE
T ss_pred             EEEECCCCc-EEEe----cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEE--EECCCCceE
Confidence            9  555555 5555    5667777777 5554444445555555444411  666677654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=8.9e-21  Score=163.21  Aligned_cols=250  Identities=11%  Similarity=0.047  Sum_probs=168.1

Q ss_pred             ccCcEEEEEEcCCCCeEEEEecCCcEEEEeCC-CCCeeEEEeeC-CCcEEEEEECCCCcE--EEEec-------------
Q 016458           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNAL-TSQKTHAIKLP-CAWVMTCAFSPTGQS--VACGG-------------  128 (389)
Q Consensus        66 h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~-------------  128 (389)
                      +...+..++|+|++++|++++.+ .|.+|++. +++........ .+.+.+++|+|+|++  ++++.             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            44568899999999999999888 99999997 77655433321 123556899999994  45553             


Q ss_pred             CCCcEEEEeCCCCCCCCCCCcceeeec----ccccceEEEEEeeCCCcEEEEee-CCCeEEEEeCC-CCeeEEEecCccc
Q 016458          129 LDSVCSIFNLNSPTDKDGNLPVSRMLS----GHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDIT-TGLRTSVFGGEFQ  202 (389)
Q Consensus       129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~  202 (389)
                      .+|.+.+|++....    .  ....+.    .+...+.+++|+|+| ++++++. .++.|++||+. +++......... 
T Consensus       117 ~~g~v~v~~~~~~g----~--~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~-  188 (365)
T 1jof_A          117 FAGYGNVFSVSETG----K--LEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDA-  188 (365)
T ss_dssp             SCCEEEEEEECTTC----C--EEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEEC-
T ss_pred             CCceEEEEccCCCC----c--CcceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEEeeeEec-
Confidence            68999999997421    1  222222    245678999999998 4555554 47899999998 665432211000 


Q ss_pred             CCCCCCeeEEEeeCCCCcEEEEeeC-CCceEEEeCCCC-Ccce---eEEe-------eecc------ceEEEE-EecCCC
Q 016458          203 SGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVA-SRAV---RTFH-------GHEG------DVNTVK-FFPDGN  263 (389)
Q Consensus       203 ~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~---~~~~-------~~~~------~i~~~~-~~~~~~  263 (389)
                      ..+...+..++|+| +++++++++. ++.|.+|++... ....   ..+.       +|..      .+..++ |+|||+
T Consensus       189 ~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~  267 (365)
T 1jof_A          189 PDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK  267 (365)
T ss_dssp             SSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS
T ss_pred             CCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC
Confidence            12356689999999 7777766654 789999987531 1221   1222       1121      478999 999999


Q ss_pred             EEEEEecCC------eEEEEECC-CCceeeEe--eccCCCCCCCCeeEEEeCC---CCCEEEEEecC-CcEEEEEcccc
Q 016458          264 RFGTGSDDG------TCRLFDIR-TGHQLQVY--YQQHGENEIPHVTSIAFSI---SGRLLFAGYSN-GDCYVWDTLLA  329 (389)
Q Consensus       264 ~l~~~~~dg------~i~i~d~~-~~~~~~~~--~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d-g~i~i~d~~~~  329 (389)
                      +|+++..+.      .|.+|++. +++.....  ....    ......++|+|   +|++|++++.+ +.|.+|++...
T Consensus       268 ~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~----~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP----TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS----SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC----CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            988776432      89999996 55543321  1111    11256789999   89999998864 89999998765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.88  E-value=1.2e-20  Score=177.32  Aligned_cols=271  Identities=11%  Similarity=0.058  Sum_probs=179.5

Q ss_pred             cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc-----EEEEEECCCCcEEEEecCC---------CcEE
Q 016458           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-----VMTCAFSPTGQSVACGGLD---------SVCS  134 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------g~i~  134 (389)
                      ...+++|+||+++++++  ||+|++||+.+++....+..+...     ...+.|||||++|+.++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            45689999999888886  899999999999987777766532     2347899999999998875         5677


Q ss_pred             EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCC--------
Q 016458          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT--------  206 (389)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------  206 (389)
                      +||+.++.        ...+..|.+.+...+|+|+| +.|+.+ .++.|++||+.++.......    .++.        
T Consensus        96 ~~d~~~~~--------~~~l~~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~~~~~lt~----~g~~~~~~~g~~  161 (740)
T 4a5s_A           96 IYDLNKRQ--------LITEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYRITW----TGKEDIIYNGIT  161 (740)
T ss_dssp             EEETTTTE--------ECCSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEECCS----CCBTTTEEESBC
T ss_pred             EEECCCCc--------EEEcccCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCCceEEEcC----CCCccceecCcc
Confidence            99998854        22355667789999999998 456665 56899999998887554321    1221        


Q ss_pred             ---------CCeeEEEeeCCCCcEEEEeeCCC------------------------------------ceEEEeCCC---
Q 016458          207 ---------ADVLSVSISGSNSRMFVSGSCDS------------------------------------TARLWDTRV---  238 (389)
Q Consensus       207 ---------~~v~~~~~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---  238 (389)
                               .....+.|+| +++.|+.++.|.                                    .|++||+.+   
T Consensus       162 ~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~  240 (740)
T 4a5s_A          162 DWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS  240 (740)
T ss_dssp             CHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCS
T ss_pred             cccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCC
Confidence                     1224589999 777777664321                                    478888886   


Q ss_pred             CCc-ceeEEee------eccceEEEEEecCCCEEEEEec----CCeEEEEECCCCc----ee--eEe-eccCCC-CCCCC
Q 016458          239 ASR-AVRTFHG------HEGDVNTVKFFPDGNRFGTGSD----DGTCRLFDIRTGH----QL--QVY-YQQHGE-NEIPH  299 (389)
Q Consensus       239 ~~~-~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~----~~--~~~-~~~~~~-~~~~~  299 (389)
                      +.. ....+..      |...+..++|+|||+.++....    +..|.+||+.+++    +.  ..+ ...+.. .....
T Consensus       241 ~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~  320 (740)
T 4a5s_A          241 VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFR  320 (740)
T ss_dssp             SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSS
T ss_pred             CCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCc
Confidence            421 2333432      6677899999999997665543    3479999999887    21  111 111110 00000


Q ss_pred             eeEEEeCCCCCEEE-EEe-cCC--cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeee
Q 016458          300 VTSIAFSISGRLLF-AGY-SNG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS  362 (389)
Q Consensus       300 i~~~~~~~~~~~l~-~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  362 (389)
                      .....|+|||+.++ ..+ .+|  .|++||+.+++... +    ......|..+.. +|++.|+..+
T Consensus       321 ~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-l----T~g~~~v~~~~~-~d~~~i~f~~  381 (740)
T 4a5s_A          321 PSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-I----TKGTWEVIGIEA-LTSDYLYYIS  381 (740)
T ss_dssp             CCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-S----CCSSSCEEEEEE-ECSSEEEEEE
T ss_pred             CCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-c----ccCCEEEEEEEE-EeCCEEEEEE
Confidence            23678999999776 554 344  58888887665543 3    233445555542 3355554433

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.88  E-value=1e-19  Score=154.67  Aligned_cols=279  Identities=12%  Similarity=0.049  Sum_probs=192.9

Q ss_pred             CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (389)
                      ..|.+++|++++..++..+.++.++.|   .++....+..+...+.+++|++++++++++..++.|.+||..++.     
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-----   77 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-----   77 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-----
Confidence            357788899988877777888899999   355666667677778999999999988888889999999987643     


Q ss_pred             CcceeeecccccceEEEEEeeCCCcEEEEeeCC----CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEE
Q 016458          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV  223 (389)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  223 (389)
                        .......+...+.++++++++ .++++...+    +.|.+||..++.....+..   ......+..++++| ++++++
T Consensus        78 --~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~i~~d~-~g~l~v  150 (333)
T 2dg1_A           78 --IKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIED---LSTAYCIDDMVFDS-KGGFYF  150 (333)
T ss_dssp             --EEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECS---SSSCCCEEEEEECT-TSCEEE
T ss_pred             --EEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc---CccCCcccceEECC-CCCEEE
Confidence              222222456779999999987 566666555    6899999988766533321   12345789999998 677777


Q ss_pred             EeeC------CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEE-EecCCeEEEEECCC-CceeeEee---ccC
Q 016458          224 SGSC------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT-GSDDGTCRLFDIRT-GHQLQVYY---QQH  292 (389)
Q Consensus       224 ~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~-~~~~~~~~---~~~  292 (389)
                      +...      .+.|..+|....  .+..+..+...+..++|+|+++.|+. .+.++.|.+||+.+ +.....+.   ...
T Consensus       151 ~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~  228 (333)
T 2dg1_A          151 TDFRGYSTNPLGGVYYVSPDFR--TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY  228 (333)
T ss_dssp             EECCCBTTBCCEEEEEECTTSC--CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred             EeccccccCCCceEEEEeCCCC--EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEe
Confidence            6543      355666665533  23333344456789999999986654 45678999999864 33322111   000


Q ss_pred             CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC--CCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458          293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--NSHEGRITCLGLSADGSALCTGSWDT  365 (389)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg  365 (389)
                      ... ...+..++++++|+++++...++.|.+||. .++.+..+....  .+|...+.+++|+||++.|+.++.++
T Consensus       229 ~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          229 FTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             CCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             cCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            000 124788999999998887777889999998 466655552110  11223689999999987777666553

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.87  E-value=2.9e-19  Score=151.41  Aligned_cols=252  Identities=12%  Similarity=0.145  Sum_probs=184.4

Q ss_pred             cCcEEEEEEcCCCCeEEEEecC------------------------CcEEEEeCCCCCeeEEEe-eCCCcEEEEEECCCC
Q 016458           67 AGKVYSLDWTSERNRIVSASQD------------------------GRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTG  121 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~d------------------------g~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~  121 (389)
                      -+.+.+++++|+|+++++...+                        ++|.+||..+++....+. .+...+..++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3579999999999999888777                        479999998888876554 233578999999999


Q ss_pred             cEEEEecCCCcEEEEeCCCCCCCCCCCcceeee---------cccccceEEEEEeeCCCcEEEEee-CCCeEEEEeCCCC
Q 016458          122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML---------SGHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTG  191 (389)
Q Consensus       122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~  191 (389)
                      +++++...++.|++|+......      ....+         ..+-.....++++|++..++++.+ .++.|++|| .++
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~------~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g  175 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEG------PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG  175 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSC------CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred             CEEEEECCCCEEEEEeCCCCeE------EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence            9888888899999999865310      11222         234456889999994336777775 699999999 556


Q ss_pred             eeEEEecCccc-----CCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe--eeccceEEEEEec----
Q 016458          192 LRTSVFGGEFQ-----SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFP----  260 (389)
Q Consensus       192 ~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~----  260 (389)
                      .....+.....     ..+......++++|..+.++++...++.|++||..++ +.+..+.  .+...+..++|+|    
T Consensus       176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~pg~~~  254 (329)
T 3fvz_A          176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNVFAISYIPGFLF  254 (329)
T ss_dssp             CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCEEEEEEETTEEE
T ss_pred             CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCcceeeecCCEEE
Confidence            66665521100     1122348899999944888888888999999999865 5565553  3455788899999    


Q ss_pred             --CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458          261 --DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (389)
Q Consensus       261 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (389)
                        +++..++...+..|++||..+++.+..+...  ......+..++++|+|.++++...++.|++|++..
T Consensus       255 ~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~--~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          255 AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV--RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEECCCCTTCSCCCCEEEEETTTCCEEEEECCS--SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC--CCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence              3333333344568999999999888776421  22333589999999998888888899999999753

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.87  E-value=6.3e-19  Score=150.70  Aligned_cols=260  Identities=10%  Similarity=0.070  Sum_probs=175.7

Q ss_pred             cEEEEEEcCCCCeEEEEe---------cCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC---C--cEE
Q 016458           69 KVYSLDWTSERNRIVSAS---------QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---S--VCS  134 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~---------~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g--~i~  134 (389)
                      .+...++  ||++++...         .++.|.+||+.+++... +    ..+..++|+|+|+.|+.++.+   +  .|.
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            4677778  888877542         25689999998877543 3    457889999999999887653   3  377


Q ss_pred             EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC---------------------------CCeEEEEe
Q 016458          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG---------------------------DQTCVLWD  187 (389)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------------------------dg~i~iwd  187 (389)
                      +|++.++.       .. .+..+.. +..+.|+|++. .|+.++.                           ...|.+||
T Consensus        89 ~~~~~~g~-------~~-~l~~~~~-~~~~~wspdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d  158 (347)
T 2gop_A           89 VADLETLS-------SK-KILEAKN-IRSLEWNEDSR-KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD  158 (347)
T ss_dssp             EEETTTTE-------EE-EEEEESE-EEEEEECTTSS-EEEEEEECCCC---------CCCC---------CEEEEEEEE
T ss_pred             EEECCCCc-------eE-EEEcCCC-ccceeECCCCC-EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE
Confidence            77776533       22 2222334 89999999984 5555442                           35799999


Q ss_pred             CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC-------ceEEEeCCCCCcceeEEeeeccceEEEEEec
Q 016458          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-------TARLWDTRVASRAVRTFHGHEGDVNTVKFFP  260 (389)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~  260 (389)
                      +.+++....+     .. . .+..+.|+| ++ +++++..++       ...+|.+. . .....+..+ ..+..+  +|
T Consensus       159 ~~~~~~~~~l-----~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d-~-~~~~~l~~~-~~~~~~--sp  224 (347)
T 2gop_A          159 TESEEVIEEF-----EK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWE-D-GKEEKMFEK-VSFYAV--DS  224 (347)
T ss_dssp             TTTTEEEEEE-----EE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEE-T-TEEEEEEEE-ESEEEE--EE
T ss_pred             CCCCeEEeee-----cC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeC-C-CceEEeccC-cceeeE--CC
Confidence            9988774444     22 3 788999999 66 777775542       33455444 3 234444445 555544  99


Q ss_pred             CCCEEEEEecC--------CeEEEEECCCCceeeEeeccCCCCCCCCeeE-EEeCCCCCEEEEEecCCcEEEEEcccceE
Q 016458          261 DGNRFGTGSDD--------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTS-IAFSISGRLLFAGYSNGDCYVWDTLLAKV  331 (389)
Q Consensus       261 ~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (389)
                      +|++|+.++.+        ..|.+||  +++.. .+...    +...+.. +.|+ ++ ++++++.++.+++| +.+++.
T Consensus       225 dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~----~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~  294 (347)
T 2gop_A          225 DGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GILDE----VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI  294 (347)
T ss_dssp             CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESSTT----CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE
T ss_pred             CCCEEEEEEccccCCccccceEEEEC--CCceE-ecccc----CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce
Confidence            99998887754        3688888  44432 22221    1224675 8999 88 88899999999999 876655


Q ss_pred             EEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCee-EEeecceecccCcc
Q 016458          332 VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL-KVNLGFWRVQEGAL  381 (389)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i-~i~~~~W~~~~~~~  381 (389)
                      ...+     .+...|.+++|+|  .++++++.++.. .|    |.+. |+.
T Consensus       295 ~~~~-----~~~~~v~~~~~s~--~~~~~~~~~~~~~~l----~~~~-g~~  333 (347)
T 2gop_A          295 KPIA-----KGRHWIMGFDVDE--IVVYLKETATRLREL----FTWD-GEE  333 (347)
T ss_dssp             EEEE-----CSSSEEEEEEESS--SEEEEEECSSSCCEE----EEES-SSE
T ss_pred             EEEe-----cCCCeEEeeeeeC--cEEEEEcCCCChHHh----eEeC-CcE
Confidence            4333     3477899999999  677777777765 77    7776 543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.87  E-value=1.5e-18  Score=144.13  Aligned_cols=243  Identities=12%  Similarity=0.159  Sum_probs=177.2

Q ss_pred             cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEee------CCCcEEEEEE-CCCCcEEEEecC-CCcEEEE
Q 016458           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL------PCAWVMTCAF-SPTGQSVACGGL-DSVCSIF  136 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~------~~~~v~~~~~-~~~~~~l~~~~~-dg~i~vw  136 (389)
                      +|-..+.+++++++++++++...++.|.+||.. ++....+..      +...+..+++ .+++.++++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            566779999999999988888889999999976 666655542      2246889999 577777766643 7899999


Q ss_pred             eCCCCCCCCCCCcceeee-cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458          137 NLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  215 (389)
                      +... .       ....+ ..+...+.++++.+++ +++++...++.|.+||.. +.....+..   ..+...+..++++
T Consensus       106 d~~g-~-------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~---~~~~~~p~~i~~~  172 (286)
T 1q7f_A          106 NQYG-Q-------FVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVLHKFGC---SKHLEFPNGVVVN  172 (286)
T ss_dssp             CTTS-C-------EEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEEEC---TTTCSSEEEEEEC
T ss_pred             CCCC-c-------EEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCC-CCEEEEeCC---CCccCCcEEEEEC
Confidence            9443 2       22223 2334568899999987 677777778999999965 444444421   1344568999999


Q ss_pred             CCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee--ccceEEEEEecCCCEEEEEecCC-eEEEEECCCCceeeEeeccC
Q 016458          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH--EGDVNTVKFFPDGNRFGTGSDDG-TCRLFDIRTGHQLQVYYQQH  292 (389)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~  292 (389)
                      + +++++++...++.|++||...  ..+..+..+  ...+..++++|+|+++++...++ .|.+||. +++.+..+....
T Consensus       173 ~-~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~  248 (286)
T 1q7f_A          173 D-KQEIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV  248 (286)
T ss_dssp             S-SSEEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS
T ss_pred             C-CCCEEEEECCCCEEEEEcCCC--CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC
Confidence            8 778888877889999999753  444555433  25688999999999888888776 9999995 466665554422


Q ss_pred             CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458          293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (389)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (389)
                      .   ...+..++++|+|+++++ +.++.|++|++...
T Consensus       249 ~---~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          249 K---HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             C---CSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             C---CCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            1   123678999999986666 67899999997543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.86  E-value=3.8e-17  Score=136.52  Aligned_cols=287  Identities=7%  Similarity=-0.022  Sum_probs=196.8

Q ss_pred             ecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe--eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458           62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN  139 (389)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~  139 (389)
                      .+..+...+.+++++++|+++++...++.|.+||.. ++.. .+.  .....+..+++++++.++++...++.|..|+..
T Consensus         9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A            9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            344566789999999999877776667899999987 5433 332  234679999999999988887778889999875


Q ss_pred             CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (389)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (389)
                      . .     . ...........+..+++.+++ .++++...++.|..||. ++.......    ......+..+++.+ ++
T Consensus        87 g-~-----~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~----~~~~~~~~~i~~~~-~g  152 (299)
T 2z2n_A           87 G-I-----I-KEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYEL----PNKGSYPSFITLGS-DN  152 (299)
T ss_dssp             S-C-----E-EEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECT-TS
T ss_pred             C-c-----E-EEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecC----CCCCCCCceEEEcC-CC
Confidence            2 1     1 111112244578899999887 66666667889999998 554433221    22345688999998 67


Q ss_pred             cEEEEeeCCCceEEEeCCCCCcceeE-EeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCC
Q 016458          220 RMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP  298 (389)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  298 (389)
                      +++++...++.|..||. ++ ..... .......+.++++++++.++++...++.|.+||. ++.... +...   ....
T Consensus       153 ~l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~---~~~~  225 (299)
T 2z2n_A          153 ALWFTENQNNAIGRITE-SG-DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIP---TPNA  225 (299)
T ss_dssp             CEEEEETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS---STTC
T ss_pred             CEEEEeCCCCEEEEEcC-CC-cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECC---CCCC
Confidence            77777766789999998 43 32221 2223456889999999987777767889999998 665332 2221   1223


Q ss_pred             CeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      .+.+++++++|++.++...++.|..||. ++... .+..  ..+...+.++++ ++|.+.++.. .+.+..    ++..+
T Consensus       226 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~--~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~----~~~~~  295 (299)
T 2z2n_A          226 RPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYPI--QIKSAEPHGICF-DGETIWFAME-CDKIGK----LTLIK  295 (299)
T ss_dssp             CEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEEC--SSSSCCEEEEEE-CSSCEEEEET-TTEEEE----EEEC-
T ss_pred             CceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEeC--CCCCCccceEEe-cCCCEEEEec-CCcEEE----EEcCc
Confidence            4889999999986666657789999998 44432 2211  344567899999 8888776655 455666    77766


Q ss_pred             Ccc
Q 016458          379 GAL  381 (389)
Q Consensus       379 ~~~  381 (389)
                      +++
T Consensus       296 ~~~  298 (299)
T 2z2n_A          296 DNM  298 (299)
T ss_dssp             ---
T ss_pred             ccC
Confidence            543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.86  E-value=1.5e-18  Score=147.05  Aligned_cols=250  Identities=13%  Similarity=0.121  Sum_probs=182.7

Q ss_pred             CcEEEEEECCCCcEEEEecCC------------------------CcEEEEeCCCCCCCCCCCcceeeec-ccccceEEE
Q 016458          110 AWVMTCAFSPTGQSVACGGLD------------------------SVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCC  164 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~d------------------------g~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~v~~~  164 (389)
                      +.+.+++++|+|+++++...+                        +.|.+||..++.       ...... .+-..+..+
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~p~gi   96 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE-------ILQSSGKNLFYLPHGL   96 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC-------EEEEECTTTCSSEEEE
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe-------EEeccCCCccCCceEE
Confidence            568999999999999888777                        479999987644       222222 344578899


Q ss_pred             EEeeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEecCccc----CCCCCCeeEEEeeCCCCcEEEEee-CCCceEEEeCCC
Q 016458          165 QYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQ----SGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRV  238 (389)
Q Consensus       165 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  238 (389)
                      ++++++ +++++...++.|++||..... .+..+.....    ..+......++++|.++.++++.+ .++.|++||.. 
T Consensus        97 a~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-  174 (329)
T 3fvz_A           97 SIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-  174 (329)
T ss_dssp             EECTTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-
T ss_pred             EECCCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-
Confidence            999988 578888889999999986542 3444421110    133446889999986677888776 68999999944 


Q ss_pred             CCcceeEEeee----------ccceEEEEEecC-CCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC
Q 016458          239 ASRAVRTFHGH----------EGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  307 (389)
Q Consensus       239 ~~~~~~~~~~~----------~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (389)
                      + ..+..+...          -..+..++++|+ +.++++...++.|++||..+++.+..+...   .....+..++|+|
T Consensus       175 g-~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~---~~~~~~~~~~~~p  250 (329)
T 3fvz_A          175 G-KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA---SFGRNVFAISYIP  250 (329)
T ss_dssp             S-CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT---TTTTCEEEEEEET
T ss_pred             C-CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc---ccCCCcceeeecC
Confidence            3 455555322          234889999998 777777788999999999988887776432   1223478899999


Q ss_pred             CCCEEEE-------EecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          308 SGRLLFA-------GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       308 ~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                       +..+.+       ...+..|++||..+++.+..+... ..+...+.+|+++|+|.++++...++.|++    |++..
T Consensus       251 -g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~~p~~ia~~~dG~lyvad~~~~~I~~----~~~~~  322 (329)
T 3fvz_A          251 -GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV-RKHFDMPHDIVASEDGTVYIGDAHTNTVWK----FTLTE  322 (329)
T ss_dssp             -TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS-SSCCSSEEEEEECTTSEEEEEESSSCCEEE----EEEEE
T ss_pred             -CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC-CCccCCeeEEEECCCCCEEEEECCCCEEEE----EeCCc
Confidence             333333       233458999999999988887321 356677999999999988888888999999    99875

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.86  E-value=4e-18  Score=141.55  Aligned_cols=241  Identities=15%  Similarity=0.168  Sum_probs=174.1

Q ss_pred             CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeee------cccccceEEEEEe-eCCCcEEEEeeC-CC
Q 016458          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML------SGHKGYVSCCQYV-PDEDTHLITSSG-DQ  181 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~-~~~~~~l~~~~~-dg  181 (389)
                      ..+.+++++++++++++...++.|.+|+....        ....+      .++...+..+++. +++ .++++... ++
T Consensus        30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~--------~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~  100 (286)
T 1q7f_A           30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR--------FKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTH  100 (286)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTTSC--------EEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGC
T ss_pred             CCCceEEECCCCCEEEEECCCCEEEEECCCCc--------EEEEecccCCCcccccCceEEEEEcCCC-eEEEEcCCCCC
Confidence            56889999999998888888999999997642        12222      1344578899995 444 55555533 89


Q ss_pred             eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe--eeccceEEEEEe
Q 016458          182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFF  259 (389)
Q Consensus       182 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~  259 (389)
                      .|.+|| .++.....+.    ..+...+..++++| +++++++...++.|.+||...  ..+..+.  .+...+..++++
T Consensus       101 ~i~~~d-~~g~~~~~~~----~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~p~~i~~~  172 (286)
T 1q7f_A          101 QIQIYN-QYGQFVRKFG----ATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNG--NVLHKFGCSKHLEFPNGVVVN  172 (286)
T ss_dssp             EEEEEC-TTSCEEEEEC----TTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTS--CEEEEEECTTTCSSEEEEEEC
T ss_pred             EEEEEC-CCCcEEEEec----CccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCCC--CEEEEeCCCCccCCcEEEEEC
Confidence            999999 5566665552    23445689999998 777888877789999999652  4444443  234568999999


Q ss_pred             cCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC-cEEEEEcccceEEEeecCc
Q 016458          260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSL  338 (389)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~  338 (389)
                      |+++++++...++.|++||.. ++.+..+...   .....+..++++++|+++++...++ .|.+||. .++.+..+.. 
T Consensus       173 ~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~---g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~-  246 (286)
T 1q7f_A          173 DKQEIFISDNRAHCVKVFNYE-GQYLRQIGGE---GITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES-  246 (286)
T ss_dssp             SSSEEEEEEGGGTEEEEEETT-CCEEEEESCT---TTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE-
T ss_pred             CCCCEEEEECCCCEEEEEcCC-CCEEEEEccC---CccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc-
Confidence            999988888889999999974 4555444321   1123478999999999888887775 9999995 4555555531 


Q ss_pred             CCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          339 QNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       339 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                       ......+.+++++|+|+++++ +.|+.|++    |++...
T Consensus       247 -~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v----~~~~~~  281 (286)
T 1q7f_A          247 -KVKHAQCFDVALMDDGSVVLA-SKDYRLYI----YRYVQL  281 (286)
T ss_dssp             -SSCCSCEEEEEEETTTEEEEE-ETTTEEEE----EECSCC
T ss_pred             -cCCCCcceeEEECCCCcEEEE-CCCCeEEE----EEcccc
Confidence             122335789999999987776 67999999    998654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.86  E-value=6.2e-20  Score=159.50  Aligned_cols=266  Identities=14%  Similarity=0.070  Sum_probs=178.2

Q ss_pred             EEEeCCCCCeeEEEeeCCCcEEE-----EEECCCCcEEEEecC-CCc--EEEEeCCCCCCCCCCCcceeeecccccceEE
Q 016458           92 IVWNALTSQKTHAIKLPCAWVMT-----CAFSPTGQSVACGGL-DSV--CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC  163 (389)
Q Consensus        92 ~iw~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-dg~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~  163 (389)
                      ..++..++..+..+..+......     .+|+|+|++|+.++. +|.  |.+||+.++.       .......+...+..
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-------~~~lt~~~~~~~~~   85 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-------ATQLTEGRGDNTFG   85 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE-------EEECCCSSCBCSSS
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-------eEEeeeCCCCCccc
Confidence            34577788888888777665665     789999999998887 664  7778887644       33444455555556


Q ss_pred             EEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE--eeCCCCcEEEEe----------------
Q 016458          164 CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS--ISGSNSRMFVSG----------------  225 (389)
Q Consensus       164 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~----------------  225 (389)
                      +.|+|++ +.|+.++.++.|++||+.+++.....     ..+...+....  ++| ++.+++..                
T Consensus        86 ~~~spdg-~~l~~~~~~~~l~~~d~~~g~~~~~~-----~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~  158 (388)
T 3pe7_A           86 GFLSPDD-DALFYVKDGRNLMRVDLATLEENVVY-----QVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKF  158 (388)
T ss_dssp             CEECTTS-SEEEEEETTTEEEEEETTTCCEEEEE-----ECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred             eEEcCCC-CEEEEEeCCCeEEEEECCCCcceeee-----echhhcccccceeECC-CCCeeccccccCcccccccccchh
Confidence            7899998 67888888899999999998877665     33344443333  366 66666632                


Q ss_pred             ------eCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecC------CeEEEEECCCCceeeEeeccC
Q 016458          226 ------SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQH  292 (389)
Q Consensus       226 ------~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~  292 (389)
                            ..+..|.+||+.++ + ...+..+...+..++|+| +|+.|+....+      ..|.++|+..+... .+....
T Consensus       159 ~~~~~~~~~~~l~~~d~~~g-~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~  235 (388)
T 3pe7_A          159 HEFYFTKPCCRLMRVDLKTG-E-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHA  235 (388)
T ss_dssp             HHHGGGCCCEEEEEEETTTC-C-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCC
T ss_pred             hhhhccCCcceEEEEECCCC-c-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCC
Confidence                  23467999999876 3 445556777899999999 99998877753      37888887755433 222211


Q ss_pred             CCCCCCCeeEEEeCCCCCEEEEEec-CC----cEEEEEcccceEEEeecCcCCCCCC---CeeEEEECCCCCeEEee---
Q 016458          293 GENEIPHVTSIAFSISGRLLFAGYS-NG----DCYVWDTLLAKVVLNLGSLQNSHEG---RITCLGLSADGSALCTG---  361 (389)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~---  361 (389)
                         ....+...+|+|||+.|+..+. ++    .|++||+.+++.......  ..+..   ....++|+|||+.|+..   
T Consensus       236 ---~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~  310 (388)
T 3pe7_A          236 ---EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSM--PACSHLMSNYDGSLMVGDGSDAPVDVQD  310 (388)
T ss_dssp             ---TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEE--CCEEEEEECTTSSEEEEEECCC------
T ss_pred             ---CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcC--CCceeeeecCCCCeEccCCCcceeEeee
Confidence               1113678899999997755433 22    399999998874332110  22100   01223799999988864   


Q ss_pred             ------eCCCeeEEeecceecccCcccC
Q 016458          362 ------SWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       362 ------~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                            ..+..|.+    |++.++++..
T Consensus       311 ~~~~~~~~~~~i~~----~d~~~~~~~~  334 (388)
T 3pe7_A          311 DSGYKIENDPFLYV----FNMKNGTQHR  334 (388)
T ss_dssp             ------CCCCEEEE----EETTTTEEEE
T ss_pred             ccccccCCCCEEEE----EeccCCceEE
Confidence                  44668888    9999887643

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=5.4e-19  Score=166.09  Aligned_cols=321  Identities=12%  Similarity=0.007  Sum_probs=196.4

Q ss_pred             CCCCcccCCCcceeeeecccccCc-----EEEEEEcCCCCeEEEEecC---------CcEEEEeCCCCCeeEEEeeCCCc
Q 016458           46 GRAPVSFGPTDLVCCRTLQGHAGK-----VYSLDWTSERNRIVSASQD---------GRLIVWNALTSQKTHAIKLPCAW  111 (389)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~h~~~-----v~~~~~~~~~~~l~~~~~d---------g~v~iw~~~~~~~~~~~~~~~~~  111 (389)
                      +.....|+.....+...+.+|...     ...++|||||++|+.++.+         +.+.+||+.+++... +..+...
T Consensus        35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~  113 (740)
T 4a5s_A           35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNN  113 (740)
T ss_dssp             TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTT
T ss_pred             CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCc
Confidence            345567777777777777887643     2447899999999998876         566799999887543 5556678


Q ss_pred             EEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC--cceeeecccc---------cceEEEEEeeCCCcEEEEeeCC
Q 016458          112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL--PVSRMLSGHK---------GYVSCCQYVPDEDTHLITSSGD  180 (389)
Q Consensus       112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~d  180 (389)
                      +...+|||||+.||.+. ++.|++|++.++.......  .....+.++.         +....+.|+||| +.|+.++.|
T Consensus       114 ~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d  191 (740)
T 4a5s_A          114 TQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFN  191 (740)
T ss_dssp             EEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEE
T ss_pred             ceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEc
Confidence            99999999999999884 6899999998754210000  0000111221         112358999998 456654321


Q ss_pred             ------------------------------------CeEEEEeCCC---C---eeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458          181 ------------------------------------QTCVLWDITT---G---LRTSVFGGEFQSGHTADVLSVSISGSN  218 (389)
Q Consensus       181 ------------------------------------g~i~iwd~~~---~---~~~~~~~~~~~~~~~~~v~~~~~~~~~  218 (389)
                                                          ..|++||+.+   +   .............+...+..++|+| +
T Consensus       192 ~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-d  270 (740)
T 4a5s_A          192 DTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-Q  270 (740)
T ss_dssp             CTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-T
T ss_pred             ccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-C
Confidence                                                1588899988   6   3332221000013667799999999 6


Q ss_pred             CcEEEEeeC----CCceEEEeCCCCC-----cceeEE--eeeccceE-----EEEEecCCCEEE-EEe-cC--CeEEEEE
Q 016458          219 SRMFVSGSC----DSTARLWDTRVAS-----RAVRTF--HGHEGDVN-----TVKFFPDGNRFG-TGS-DD--GTCRLFD  278 (389)
Q Consensus       219 ~~~l~~~~~----dg~i~i~d~~~~~-----~~~~~~--~~~~~~i~-----~~~~~~~~~~l~-~~~-~d--g~i~i~d  278 (389)
                      +++++....    +..|.+||+.++.     .....+  ..|...+.     ...|+|||+.|+ ..+ .+  ..|++||
T Consensus       271 g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~  350 (740)
T 4a5s_A          271 ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ  350 (740)
T ss_dssp             TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred             CeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence            776655433    2379999998763     012222  34555444     789999999877 555 33  3588899


Q ss_pred             CCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC-----CcEEE--EEcccceEEEeecCcCCCCCCCeeEEEE
Q 016458          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYV--WDTLLAKVVLNLGSLQNSHEGRITCLGL  351 (389)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i--~d~~~~~~~~~~~~~~~~~~~~v~~~~~  351 (389)
                      +..+.... +.....     .+..+.. ++++.|+..+..     +...|  .++..+.....+.............+.|
T Consensus       351 ~~~~~~~~-lT~g~~-----~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~  423 (740)
T 4a5s_A          351 IDKKDCTF-ITKGTW-----EVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSF  423 (740)
T ss_dssp             TTCSSCEE-SCCSSS-----CEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEE
T ss_pred             CCCCceEe-cccCCE-----EEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEE
Confidence            88665443 222221     2455432 346655544332     33444  4554444332342111123457889999


Q ss_pred             CCCCCeEEeeeCC---CeeEEeecceecccCcc
Q 016458          352 SADGSALCTGSWD---TNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       352 ~~~~~~l~~~~~d---g~i~i~~~~W~~~~~~~  381 (389)
                      +|++++++.....   ..+.+    ++..+++.
T Consensus       424 S~dg~~~~~~~s~~~~p~~~l----~~~~~~~~  452 (740)
T 4a5s_A          424 SKEAKYYQLRCSGPGLPLYTL----HSSVNDKG  452 (740)
T ss_dssp             CTTSSEEEEEECSBSSCEEEE----EETTTTEE
T ss_pred             CCCCCEEEEEeCCCCCCEEEE----EECCCCcE
Confidence            9999987655443   24555    77766643

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.85  E-value=3.1e-17  Score=147.34  Aligned_cols=305  Identities=14%  Similarity=0.129  Sum_probs=211.5

Q ss_pred             cCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCC--CCCeeEEEeeCCCcEEEEEEC----CCCcEEE
Q 016458           52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL--TSQKTHAIKLPCAWVMTCAFS----PTGQSVA  125 (389)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~  125 (389)
                      +++...+.+.++.... .+..+.|+|||+++++++.|+.|.+||+.  +++.+..+.... ....++|+    |+|++++
T Consensus       182 iD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~  259 (567)
T 1qks_A          182 IDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAI  259 (567)
T ss_dssp             EETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEE
T ss_pred             EECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEE
Confidence            4455555666665333 46789999999999999999999999995  788888777644 46899999    6999988


Q ss_pred             EecC-CCcEEEEeCCCCCCCCCCCcceeeecc----------ccc-ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee
Q 016458          126 CGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSG----------HKG-YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR  193 (389)
Q Consensus       126 ~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  193 (389)
                      ++.. ++.|.++|..+.+       ....+..          |.. .+..+..+++++..++....+|.|.++|..+...
T Consensus       260 v~n~~~~~v~ViD~~t~~-------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~  332 (567)
T 1qks_A          260 AGAYWPPQYVIMDGETLE-------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN  332 (567)
T ss_dssp             EEEEETTEEEEEETTTCC-------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred             EEEccCCeEEEEECCCCc-------EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc
Confidence            7765 5899999977643       3333221          222 5778888888777777777889999999987643


Q ss_pred             EEEecCcccCCCCCCeeEEEeeCCCCcEEE-EeeCCCceEEEeCCCCCcceeEEee-----eccceEEEE-EecCCCEE-
Q 016458          194 TSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDSTARLWDTRVASRAVRTFHG-----HEGDVNTVK-FFPDGNRF-  265 (389)
Q Consensus       194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~i~~~~-~~~~~~~l-  265 (389)
                      .....    .........+.|+| ++++++ ++..++.|.++|..+. +.+..+..     |.+  ..+. ++|++..+ 
T Consensus       333 ~~v~~----i~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~-kl~~~i~vgg~~Phpg--~g~~~~~p~~g~v~  404 (567)
T 1qks_A          333 LKTTE----ISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPG--RGANFVHPTFGPVW  404 (567)
T ss_dssp             EEEEE----EECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCT--TCEEEEETTTEEEE
T ss_pred             ceeee----eeccccccCceECC-CCCEEEEEeCCCCeEEEEECCCC-cEEEEEeccCcCCCCc--cceeeECCCCCcEE
Confidence            33221    12334577889999 555554 4556889999999987 55544432     322  1222 57875544 


Q ss_pred             EEEe-cCCeEEEEECCC-------CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec-------CCcEEEEEcccc-
Q 016458          266 GTGS-DDGTCRLFDIRT-------GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-------NGDCYVWDTLLA-  329 (389)
Q Consensus       266 ~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~-  329 (389)
                      +++. .++.|.++|..+       .+.+..+.....     .-..+..+|+++++++...       .+.|.++|+.+. 
T Consensus       405 ~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~-----g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~  479 (567)
T 1qks_A          405 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG-----GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMT  479 (567)
T ss_dssp             EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-----CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCC
T ss_pred             EeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC-----CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccc
Confidence            4443 568999999987       455565544321     1245778999999998763       359999999877 


Q ss_pred             ----eEE-Eeec-----CcCCCCCCCeeEEEECCCCCeEEeeeC-----CCeeEEeecceecccCcccC
Q 016458          330 ----KVV-LNLG-----SLQNSHEGRITCLGLSADGSALCTGSW-----DTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       330 ----~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~~~~W~~~~~~~~~  383 (389)
                          ... ..+.     .+ ......+..+.|+++|+.+..+..     ++.|.|    +|..++++..
T Consensus       480 ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v----~D~~t~~~~~  543 (567)
T 1qks_A          480 GDGSDPEFKTLPIAEWAGI-TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVV----VDDKTLELKH  543 (567)
T ss_dssp             CSSSCCCEEEECHHHHHTC-CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEE----EETTTTEEEE
T ss_pred             ccccCCCcEEecccccccc-CCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEE----EECCCceEEE
Confidence                211 2221     01 112357899999999998877643     799999    9999998764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.83  E-value=1.5e-17  Score=138.82  Aligned_cols=252  Identities=9%  Similarity=0.041  Sum_probs=177.4

Q ss_pred             CCeeEEEeeCCCcEEEEEECCCCc-EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEe
Q 016458           99 SQKTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS  177 (389)
Q Consensus        99 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  177 (389)
                      +..+..+..+.....+++|+|+++ +++++..++.|..|+..++         ...+..+...+.++++++++ .++++.
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~l~~~~dg-~l~v~~   86 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---------LSPEMHPSHHQNGHCLNKQG-HLIACS   86 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---------EEEEESSCSSEEEEEECTTC-CEEEEE
T ss_pred             CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---------eEEEECCCCCcceeeECCCC-cEEEEe
Confidence            344455555666788999999998 7788888999999998762         23344566778999999987 566666


Q ss_pred             eCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEE----ee-------------CCCceEEEeCCCCC
Q 016458          178 SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS----GS-------------CDSTARLWDTRVAS  240 (389)
Q Consensus       178 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~  240 (389)
                      ..++.|.+||..+++........ .......+..++++| +++++++    |+             ..+.|..++..   
T Consensus        87 ~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~---  161 (296)
T 3e5z_A           87 HGLRRLERQREPGGEWESIADSF-EGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD---  161 (296)
T ss_dssp             TTTTEEEEECSTTCCEEEEECEE-TTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT---
T ss_pred             cCCCeEEEEcCCCCcEEEEeecc-CCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC---
Confidence            66789999999887755443110 011123567899998 7788876    33             13455555554   


Q ss_pred             cceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECC-CCce---eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458          241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR-TGHQ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (389)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (389)
                      ..+..+..+......++|+|+++.+++.+.++.|.+|++. ++..   ...+ ..    ....+..++++++|+++++. 
T Consensus       162 g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~----~~~~p~~i~~d~~G~l~v~~-  235 (296)
T 3e5z_A          162 GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TV----EPGKTDGLRVDAGGLIWASA-  235 (296)
T ss_dssp             SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CC----SSSCCCSEEEBTTSCEEEEE-
T ss_pred             CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eC----CCCCCCeEEECCCCCEEEEc-
Confidence            2334445566678899999999998777788999999987 4443   2222 11    12236789999999866655 


Q ss_pred             cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEE-CCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          317 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL-SADGSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                       ++.|.+||.. ++.+..+    ..+.. +++++| +|+++.|++++.++..+     .+..+.+++.
T Consensus       236 -~~~v~~~~~~-g~~~~~~----~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~-----~~~~~~~~~~  291 (296)
T 3e5z_A          236 -GDGVHVLTPD-GDELGRV----LTPQT-TSNLCFGGPEGRTLYMTVSTEFWS-----IETNVRGLEH  291 (296)
T ss_dssp             -TTEEEEECTT-SCEEEEE----ECSSC-CCEEEEESTTSCEEEEEETTEEEE-----EECSCCBCCC
T ss_pred             -CCeEEEECCC-CCEEEEE----ECCCC-ceeEEEECCCCCEEEEEcCCeEEE-----EEcccccccc
Confidence             7889999986 7777666    45555 899999 68999999888876554     5666666554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.83  E-value=1e-16  Score=144.04  Aligned_cols=284  Identities=11%  Similarity=0.023  Sum_probs=200.3

Q ss_pred             CCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC--CCCCCCCCCcceeee
Q 016458           77 SERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN--SPTDKDGNLPVSRML  154 (389)
Q Consensus        77 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~--~~~~~~~~~~~~~~~  154 (389)
                      +.+.++++...+++|.++|..+++.+..+.... .+..+.|+|+|+++++++.++.|.+||+.  +.+       ....+
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~-------~v~~i  236 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-------TVAEI  236 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-------EEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-------EeEEE
Confidence            444567777789999999999999998887654 46799999999999999999999999995  322       33444


Q ss_pred             cccccceEEEEEe----eCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC-----C-CCCeeEEEeeCCCCcEEEE
Q 016458          155 SGHKGYVSCCQYV----PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG-----H-TADVLSVSISGSNSRMFVS  224 (389)
Q Consensus       155 ~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~-~~~v~~~~~~~~~~~~l~~  224 (389)
                      ... .....++|+    |+|...+++...++.|.++|..+.+.+..+.......     | ...+..+..++....+++.
T Consensus       237 ~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~  315 (567)
T 1qks_A          237 KIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN  315 (567)
T ss_dssp             ECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             ecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence            432 345789999    6886555566677999999999998888774321000     1 2257788888866667777


Q ss_pred             eeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceeeEeec-cCCCCCCCCeeE
Q 016458          225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQ-QHGENEIPHVTS  302 (389)
Q Consensus       225 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~i~~  302 (389)
                      ...+|.|.++|....................+.|+|++++++++. .++.|.++|+.+++....+.. .. ..+...-..
T Consensus       316 ~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~-~Phpg~g~~  394 (567)
T 1qks_A          316 VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ-TPHPGRGAN  394 (567)
T ss_dssp             ETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-SBCCTTCEE
T ss_pred             ecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc-CCCCcccee
Confidence            777899999998765222222222334567889999999987665 678999999999987776654 22 112111112


Q ss_pred             EEeCCCCCEEE-EEe-cCCcEEEEEccc-------ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC-------CCe
Q 016458          303 IAFSISGRLLF-AGY-SNGDCYVWDTLL-------AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-------DTN  366 (389)
Q Consensus       303 ~~~~~~~~~l~-~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~  366 (389)
                       -++|++..++ ++. .++.|.++|..+       .+.+.++.    .....-..+..+|++++|.+...       .+.
T Consensus       395 -~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~----~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~  469 (567)
T 1qks_A          395 -FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP----ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGS  469 (567)
T ss_dssp             -EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE----CSCSCCCCEECCTTCSEEEEECTTCSSHHHHTC
T ss_pred             -eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe----cCCCCCEEEEeCCCCCeEEEecCCCCCcccCce
Confidence             2578755444 443 468999999987       66777773    32233345778999999988663       458


Q ss_pred             eEEeecceecccC
Q 016458          367 LKVNLGFWRVQEG  379 (389)
Q Consensus       367 i~i~~~~W~~~~~  379 (389)
                      |.+    +|+.+.
T Consensus       470 v~v----~d~~~~  478 (567)
T 1qks_A          470 VAV----FDIKAM  478 (567)
T ss_dssp             EEE----EEGGGC
T ss_pred             EEE----EECCcc
Confidence            999    998876

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.83  E-value=1e-16  Score=136.20  Aligned_cols=246  Identities=9%  Similarity=0.030  Sum_probs=170.6

Q ss_pred             eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC----CcE
Q 016458           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD----SVC  133 (389)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i  133 (389)
                      .....+.++...+.+++|++++++++++..++.|.+||..+++.......+...+.+++++++++++++...+    +.|
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i  114 (333)
T 2dg1_A           35 EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGI  114 (333)
T ss_dssp             EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred             ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence            4455677777788999999999988888889999999998887665554556779999999999988877666    689


Q ss_pred             EEEeCCCCCCCCCCCcceeee--cccccceEEEEEeeCCCcEEEEeeC------CCeEEEEeCCCCeeEEEecCcccCCC
Q 016458          134 SIFNLNSPTDKDGNLPVSRML--SGHKGYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQSGH  205 (389)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~  205 (389)
                      .+||..+..       ....+  ..+...+.++.++|++ .++++...      .+.|..+|..+++.....      ..
T Consensus       115 ~~~d~~~~~-------~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~  180 (333)
T 2dg1_A          115 FAATENGDN-------LQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII------QN  180 (333)
T ss_dssp             EEECTTSCS-------CEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEE------EE
T ss_pred             EEEeCCCCE-------EEEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEEee------cC
Confidence            999987643       11111  1234578899999987 55555443      366777777655443332      12


Q ss_pred             CCCeeEEEeeCCCCc-EEEEeeCCCceEEEeCCCCCcceeEE-----eeec--cceEEEEEecCCCEEEEEecCCeEEEE
Q 016458          206 TADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVASRAVRTF-----HGHE--GDVNTVKFFPDGNRFGTGSDDGTCRLF  277 (389)
Q Consensus       206 ~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~i~  277 (389)
                      ...+..++++| +++ ++++.+.++.|.+||.......+..+     ....  ..+..++++++|+++++...++.|.+|
T Consensus       181 ~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~  259 (333)
T 2dg1_A          181 ISVANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVF  259 (333)
T ss_dssp             ESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             CCcccceEECC-CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence            23578899999 665 55555667899999986432222211     1111  357889999999988887788999999


Q ss_pred             ECCCCceeeEeeccCC-CCCCCCeeEEEeCCCCCEEEEEecCC
Q 016458          278 DIRTGHQLQVYYQQHG-ENEIPHVTSIAFSISGRLLFAGYSNG  319 (389)
Q Consensus       278 d~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (389)
                      |. .++.+..+..... ..+...+.+++|+|+++.|++++.++
T Consensus       260 d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          260 NK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             CT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            98 4665555543211 01111378999999988887766654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.83  E-value=2.7e-17  Score=139.02  Aligned_cols=269  Identities=10%  Similarity=0.022  Sum_probs=187.0

Q ss_pred             cCCcEEEEeCCCCCeeEEEee------CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccc
Q 016458           87 QDGRLIVWNALTSQKTHAIKL------PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY  160 (389)
Q Consensus        87 ~dg~v~iw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  160 (389)
                      .+++|.++|..+++....+..      .......+++. +++.+++...++.|.+||..+.+       ....+. ....
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~-------~~~~i~-~~~~   85 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFK-------EVGRIT-GFTS   85 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCC-------EEEEEE-CCSS
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccE-------EEEEcC-CCCC
Confidence            378999999998876554311      11335677774 45566666678999999998755       444443 3456


Q ss_pred             eEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCCceEEEeCCCC
Q 016458          161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVA  239 (389)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~  239 (389)
                      ...+++++++ .++++...++.|.+||..+++....+..............+++ . ++.++++.. .++.|.++|..+.
T Consensus        86 p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~  162 (328)
T 3dsm_A           86 PRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETD  162 (328)
T ss_dssp             EEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTT
T ss_pred             CcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCC
Confidence            7889999987 5555554899999999999988776632110111124556666 2 566666554 4889999999877


Q ss_pred             CcceeEEeeeccceEEEEEecCCCEEEEEecC----------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC
Q 016458          240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD----------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  309 (389)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  309 (389)
                       +....+.. ......++++|+|++++++..+          +.|.++|..+++....+.....    .....++|+|++
T Consensus       163 -~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g----~~p~~la~~~d~  236 (328)
T 3dsm_A          163 -KVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG----DWPSEVQLNGTR  236 (328)
T ss_dssp             -EEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT----CCCEEEEECTTS
T ss_pred             -eEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC----CCceeEEEecCC
Confidence             55555543 3345789999999877777655          7899999998887766543221    137899999999


Q ss_pred             CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC-CCCeEEee----eCCCeeEEeecceecccCccc
Q 016458          310 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTG----SWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~----~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      +.|+++..  .|.+||..+++..... .. ........+++++| ++.++++.    ..++.|.+    |+.. |++.
T Consensus       237 ~~lyv~~~--~v~~~d~~t~~~~~~~-~~-~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v----~d~~-g~~~  305 (328)
T 3dsm_A          237 DTLYWINN--DIWRMPVEADRVPVRP-FL-EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYR----YSPQ-GKLI  305 (328)
T ss_dssp             CEEEEESS--SEEEEETTCSSCCSSC-SB-CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEE----ECTT-CCEE
T ss_pred             CEEEEEcc--EEEEEECCCCceeeee-ee-cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEE----ECCC-CCEE
Confidence            99988765  8999999887753211 00 22246789999999 55555555    57899999    9998 7654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.83  E-value=1.7e-17  Score=155.23  Aligned_cols=246  Identities=10%  Similarity=0.008  Sum_probs=170.3

Q ss_pred             CcEEEEEECCCCcEEEEecCCC-----cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe--
Q 016458          110 AWVMTCAFSPTGQSVACGGLDS-----VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT--  182 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--  182 (389)
                      ..+..++|||||++|+.+..++     .|++||+.++.       ...... ....+..++|+|++ +.|+.++.++.  
T Consensus       125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~-------~~~~~~-~~~~~~~~~wspDg-~~l~~~~~~~~~~  195 (710)
T 2xdw_A          125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK-------ELPDVL-ERVKFSCMAWTHDG-KGMFYNAYPQQDG  195 (710)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE-------EEEEEE-EEECSCCEEECTTS-SEEEEEECCCCSS
T ss_pred             EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC-------CCcccc-cCcccceEEEEeCC-CEEEEEEECCccc
Confidence            3578899999999998765533     89999998754       222111 12236679999998 56666666554  


Q ss_pred             --------------EEEEeCCCCee--EEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-----CCceEEEeCCC---
Q 016458          183 --------------CVLWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----DSTARLWDTRV---  238 (389)
Q Consensus       183 --------------i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~---  238 (389)
                                    |++|++.++..  ...+..   ..+...+..+.|+| ++++|+.++.     +..|++||+..   
T Consensus       196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~---~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~  271 (710)
T 2xdw_A          196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF---PDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESN  271 (710)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC---TTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred             cccccccccCCCCEEEEEECCCCcccceEEecc---CCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECccccc
Confidence                          99999988763  222211   23455678999999 6777666554     56899999986   


Q ss_pred             ---CCcceeEEeeeccceEEEEEecCCCEEEEEecC----CeEEEEECCCCce--eeEeeccCCCCCCCCeeEEEeCCCC
Q 016458          239 ---ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD----GTCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISG  309 (389)
Q Consensus       239 ---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~  309 (389)
                         +......+..+...+.. .|+|+|+.|+..+..    +.|.+||+.++..  ...+..+..   ...+..++|++++
T Consensus       272 ~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~  347 (710)
T 2xdw_A          272 GITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE---KDVLEWVACVRSN  347 (710)
T ss_dssp             SSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS---SCEEEEEEEETTT
T ss_pred             ccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC---CCeEEEEEEEcCC
Confidence               32246666666666554 588999988776653    3699999987642  233332211   1237788998788


Q ss_pred             CEEEEEecCCc--EEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee----eCCCeeEEeecceecccCc
Q 016458          310 RLLFAGYSNGD--CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG----SWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       310 ~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~i~~~~W~~~~~~  380 (389)
                      .++++...++.  |.+||+.+++....+    ..+.+.+..++++|++..++..    ...+.+..    ||+.+|+
T Consensus       348 ~lv~~~~~~g~~~l~~~~~~~g~~~~~l----~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~----~d~~tg~  416 (710)
T 2xdw_A          348 FLVLCYLHDVKNTLQLHDLATGALLKIF----PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYH----CDLTKEE  416 (710)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEE----CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEE----EETTSSS
T ss_pred             EEEEEEEECCEEEEEEEECCCCCEEEec----CCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEE----EECCCCc
Confidence            88888888884  666777677776777    4567789999999998766633    23478888    9999887

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=2.5e-18  Score=160.00  Aligned_cols=256  Identities=13%  Similarity=0.076  Sum_probs=161.8

Q ss_pred             eeecccccCcEE---------EEEEc--CCCCe-EEEEec-CCcEEEEeCC--CCCeeEEEee-----CCCcEEEEEECC
Q 016458           60 CRTLQGHAGKVY---------SLDWT--SERNR-IVSASQ-DGRLIVWNAL--TSQKTHAIKL-----PCAWVMTCAFSP  119 (389)
Q Consensus        60 ~~~l~~h~~~v~---------~~~~~--~~~~~-l~~~~~-dg~v~iw~~~--~~~~~~~~~~-----~~~~v~~~~~~~  119 (389)
                      .+.+..|...+.         ...|+  |||+. |+.++. +..|.++++.  .......+..     +...+..++|+|
T Consensus        60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp  139 (662)
T 3azo_A           60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP  139 (662)
T ss_dssp             EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET
T ss_pred             cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC
Confidence            456666766666         66665  99998 776554 5567777765  2033444444     556788999999


Q ss_pred             CCcEEEEecCC----------CcEEEEeCCCCCCCCCCCcceeeec-ccccceEEEEEeeCCCcEEEEeeCC--------
Q 016458          120 TGQSVACGGLD----------SVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGD--------  180 (389)
Q Consensus       120 ~~~~l~~~~~d----------g~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------  180 (389)
                      +|+.|++++.+          ..|++|++.+....  .......+. .+...+..+.|+|+| +.|+.++.+        
T Consensus       140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~  216 (662)
T 3azo_A          140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA--DRSAVRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEG  216 (662)
T ss_dssp             TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT--CGGGSEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTC
T ss_pred             CCCEEEEEEecccCCCCCCceeEEEEEECCCCccc--cCCceeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCC
Confidence            99999988876          58999998762000  000122333 455677889999998 566655543        


Q ss_pred             CeEEEEeCC-CC---eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC--ceEEEeCCCCCcceeEEeeeccc--
Q 016458          181 QTCVLWDIT-TG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGD--  252 (389)
Q Consensus       181 g~i~iwd~~-~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~--  252 (389)
                      ..|.+||+. ++   ......     ..+...+..+.|+| ++++++++..++  .|.+||...+ . ...+..+...  
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~-----~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~-~-~~~l~~~~~~~~  288 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLL-----GGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATG-A-ATQLCRREEEFA  288 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEE-----EETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTC-C-EEESSCCSSBSS
T ss_pred             cEEEEEEECCCCcccccEEeC-----CCCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCC-c-eeeccccccccc
Confidence            479999999 56   333333     34567899999999 666888888888  5555665443 2 2222222221  


Q ss_pred             -------eEEEEEecCCCEEEEEecCCeEEEE--ECCCCceeeEeeccCCCCCCCCeeEE-EeCCCCCEEEEEecCC--c
Q 016458          253 -------VNTVKFFPDGNRFGTGSDDGTCRLF--DIRTGHQLQVYYQQHGENEIPHVTSI-AFSISGRLLFAGYSNG--D  320 (389)
Q Consensus       253 -------i~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~dg--~  320 (389)
                             +..++|+|+++++++++. +.+++|  |+.++. ...+....     ..+..+ +++++.-++++++.+.  .
T Consensus       289 ~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~-----~~~~~~~s~~~~~~~~~~~~~~~~~~  361 (662)
T 3azo_A          289 GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPW-----TEWAATLTVSGTRAVGVAASPRTAYE  361 (662)
T ss_dssp             CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSC-----CEEEEEEEEETTEEEEEEEETTEEEE
T ss_pred             CccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCC-----CeEEEEEecCCCEEEEEEcCCCCCCE
Confidence                   467899999999999988 999999  555444 44443322     235555 4433322333444443  4


Q ss_pred             EEEEEcccceEEE
Q 016458          321 CYVWDTLLAKVVL  333 (389)
Q Consensus       321 i~i~d~~~~~~~~  333 (389)
                      |.++|+.+++...
T Consensus       362 i~~~d~~~g~~~~  374 (662)
T 3azo_A          362 VVELDTVTGRART  374 (662)
T ss_dssp             EEEEETTTCCEEE
T ss_pred             EEEEECCCCceEE
Confidence            6666776776543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.81  E-value=4.1e-17  Score=134.22  Aligned_cols=242  Identities=9%  Similarity=0.002  Sum_probs=169.1

Q ss_pred             cEEEEEECCCCcEEE-EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          111 WVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       111 ~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                      ...++++++++++++ +...++.|.+|+.....       .......+...+.++++.+++ .++++.. ++.|.+||..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~   95 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG-------TTVLPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAG   95 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC------------EECCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcc-------cceEeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCC
Confidence            678999999999777 54678899999876532       111112233467789999987 4555544 8899999987


Q ss_pred             CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe
Q 016458          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  269 (389)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  269 (389)
                      ........     ......+..+++.+ +++++++...++.|.+|+.... ............+.+++++++++++++..
T Consensus        96 ~~~~~~~~-----~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  168 (270)
T 1rwi_B           96 SNNQTVLP-----FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSK-TQTVLPFTGLNDPDGVAVDNSGNVYVTDT  168 (270)
T ss_dssp             CSCCEECC-----CCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCC-SCEECCCCSCCSCCCEEECTTCCEEEEEG
T ss_pred             CceEeeee-----cCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCc-eeEeeccccCCCceeEEEeCCCCEEEEEC
Confidence            65443221     22335688999998 7777777777889999976544 22111122234578899999999777777


Q ss_pred             cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEE
Q 016458          270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  349 (389)
Q Consensus       270 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  349 (389)
                      .++.|.+||............     ....+..++++++|.++++...++.|.+||..........    ..+...+.++
T Consensus       169 ~~~~i~~~~~~~~~~~~~~~~-----~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~----~~~~~~p~~i  239 (270)
T 1rwi_B          169 DNNRVVKLEAESNNQVVLPFT-----DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP----FTGLNTPLAV  239 (270)
T ss_dssp             GGTEEEEECTTTCCEEECCCS-----SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC----CCSCSCEEEE
T ss_pred             CCCEEEEEecCCCceEeeccc-----CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec----cCCCCCceeE
Confidence            788999999876654332211     1134789999999977777777889999998765443322    2344678999


Q ss_pred             EECCCCCeEEeeeCCCeeEEeecceecccCcc
Q 016458          350 GLSADGSALCTGSWDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       350 ~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~  381 (389)
                      +++++|+++++...++.|++    +++...+.
T Consensus       240 ~~~~~g~l~v~~~~~~~v~~----~~~~~~~~  267 (270)
T 1rwi_B          240 AVDSDRTVYVADRGNDRVVK----LTSLEHHH  267 (270)
T ss_dssp             EECTTCCEEEEEGGGTEEEE----ECCCGGGS
T ss_pred             EECCCCCEEEEECCCCEEEE----EcCCCccc
Confidence            99999998888889999999    99887654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.81  E-value=1.6e-16  Score=132.55  Aligned_cols=243  Identities=12%  Similarity=0.124  Sum_probs=172.2

Q ss_pred             eecccccCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458           61 RTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN  139 (389)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~  139 (389)
                      ..+..+.....+++|+|+++ +++++..++.|..||..++  ...+..+...+.+++++++|+++++...++.|.+|+..
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            34445666788999999998 7888888999999998877  56666777789999999999988887777899999986


Q ss_pred             CCCCCCCCCcceeeec---c-cccceEEEEEeeCCCcEEEE----ee-------------CCCeEEEEeCCCCeeEEEec
Q 016458          140 SPTDKDGNLPVSRMLS---G-HKGYVSCCQYVPDEDTHLIT----SS-------------GDQTCVLWDITTGLRTSVFG  198 (389)
Q Consensus       140 ~~~~~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~l~~----~~-------------~dg~i~iwd~~~~~~~~~~~  198 (389)
                      ++.       ......   . ....+.++++.|+| +++++    |+             ..+.|..++.. +.... + 
T Consensus        99 ~g~-------~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~-  167 (296)
T 3e5z_A           99 GGE-------WESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA-P-  167 (296)
T ss_dssp             TCC-------EEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE-E-
T ss_pred             CCc-------EEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CCEEE-e-
Confidence            543       111111   1 12346779999988 56665    33             13567777765 44333 2 


Q ss_pred             CcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc---eeEEeeeccceEEEEEecCCCEEEEEecCCeEE
Q 016458          199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA---VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR  275 (389)
Q Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  275 (389)
                          ..+......++|+| +++.+++.+.++.|.+||+......   ...+..+...+.+++++++|+++++.  ++.|.
T Consensus       168 ----~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~  240 (296)
T 3e5z_A          168 ----IRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVH  240 (296)
T ss_dssp             ----ECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEE
T ss_pred             ----ecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEE
Confidence                24455678999999 6666677777899999998732232   22233344567789999999866665  78999


Q ss_pred             EEECCCCceeeEeeccCCCCCCCCeeEEEe-CCCCCEEEEEecCCcEEEEEcccceE
Q 016458          276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAF-SISGRLLFAGYSNGDCYVWDTLLAKV  331 (389)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (389)
                      +||.. ++.+..+....     . +++++| +|+++.|++++.+ .+.-++..+.+.
T Consensus       241 ~~~~~-g~~~~~~~~~~-----~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          241 VLTPD-GDELGRVLTPQ-----T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL  289 (296)
T ss_dssp             EECTT-SCEEEEEECSS-----C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred             EECCC-CCEEEEEECCC-----C-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence            99986 66666554322     1 688899 6899999988876 465666655443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.81  E-value=3.2e-17  Score=153.42  Aligned_cols=248  Identities=9%  Similarity=0.046  Sum_probs=168.1

Q ss_pred             ccCcEEEEEEcCCCCeEEEEecCC-----cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCc--------
Q 016458           66 HAGKVYSLDWTSERNRIVSASQDG-----RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV--------  132 (389)
Q Consensus        66 h~~~v~~~~~~~~~~~l~~~~~dg-----~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------  132 (389)
                      |...+..++|||||++||.++.++     .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.        
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence            444688999999999998776543     8999999998876543222 23667999999999999887765        


Q ss_pred             --------EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC-----CCeEEEEeCCC------Ce-
Q 016458          133 --------CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----DQTCVLWDITT------GL-  192 (389)
Q Consensus       133 --------i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~-  192 (389)
                              |++|++.++...   .........|...+..+.|+|++. +|+.++.     +..|.+||+.+      +. 
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~---~~~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  277 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSE---DILCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGG---CEEEECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             cccCCCCEEEEEECCCCccc---ceEEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence                    999999764311   011112233455678899999985 5554443     57899999976      42 


Q ss_pred             eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-C---CceEEEeCCCCCc-ceeEEeeecc--ceEEEEEecCCCEE
Q 016458          193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-D---STARLWDTRVASR-AVRTFHGHEG--DVNTVKFFPDGNRF  265 (389)
Q Consensus       193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~-~~~~~~~~~~--~i~~~~~~~~~~~l  265 (389)
                      ....+     ..+...+.. .|+| ++..|+..+. +   +.|.+||+.++.. ....+..|..  .+..++|++++.++
T Consensus       278 ~~~~l-----~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv  350 (710)
T 2xdw_A          278 KWVKL-----IDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV  350 (710)
T ss_dssp             CCEEE-----ECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred             ceEEe-----eCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEE
Confidence            23333     233444444 4777 4444444443 3   3699999986532 2355555544  68889999877888


Q ss_pred             EEEecCCe--EEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe----cCCcEEEEEcccce
Q 016458          266 GTGSDDGT--CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY----SNGDCYVWDTLLAK  330 (389)
Q Consensus       266 ~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~  330 (389)
                      ++...|+.  |.+||+.+++....+...     ...+..+.++|+++.++...    ..+.|+.||+.+++
T Consensus       351 ~~~~~~g~~~l~~~~~~~g~~~~~l~~~-----~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          351 LCYLHDVKNTLQLHDLATGALLKIFPLE-----VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEECCC-----SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEECCEEEEEEEECCCCCEEEecCCC-----CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            88888884  666787677765555433     22478899999998666442    34689999998766

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.80  E-value=2e-16  Score=129.74  Aligned_cols=255  Identities=13%  Similarity=0.094  Sum_probs=186.3

Q ss_pred             CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC-CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecc
Q 016458           78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG  156 (389)
Q Consensus        78 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  156 (389)
                      .+++|++++.|+.|.+||.++++.+..+..+. ..+.++.++|+|+++++  .++.|..||. +++       ....+..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~-------~~W~~~~   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGR-------ELWNIAA   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSC-------EEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCC-------EEEEEcC
Confidence            45789999999999999999999999998776 46889999999998883  4678999998 433       3444444


Q ss_pred             c-ccceEEEEEeeCCCcEEEEeeC-CCeEEEEeCCCCeeEEEecCccc-CCCCCCeeEEEeeCCCCcEEEEeeCCCceEE
Q 016458          157 H-KGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQ-SGHTADVLSVSISGSNSRMFVSGSCDSTARL  233 (389)
Q Consensus       157 ~-~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  233 (389)
                      + ...+.++.+.+++ +++++.+. ++.|..+|. +++.+..+..... ..+......+...+ +++++++...++.|..
T Consensus        74 ~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~  150 (276)
T 3no2_A           74 PAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVRE  150 (276)
T ss_dssp             CTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEE
T ss_pred             CCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEE
Confidence            3 3467888999998 67777776 888888886 6666666532110 11222345566777 8889999999999999


Q ss_pred             EeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCC-CCCCCeeEEEeCCCCCEE
Q 016458          234 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-NEIPHVTSIAFSISGRLL  312 (389)
Q Consensus       234 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l  312 (389)
                      ||.. + +.+..+... ..+.++...++++++++++.++.|..+|..+++.+..+...... .....+..++..++|+.+
T Consensus       151 ~d~~-G-~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~  227 (276)
T 3no2_A          151 IAPN-G-QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLY  227 (276)
T ss_dssp             ECTT-S-CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEE
T ss_pred             ECCC-C-CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEE
Confidence            9987 5 666666643 45667888899999999998899999999999998888643211 122347888899999988


Q ss_pred             EEEecC--------CcEEEEEc-ccceEEEeecCcCCCCCCCeeEEE
Q 016458          313 FAGYSN--------GDCYVWDT-LLAKVVLNLGSLQNSHEGRITCLG  350 (389)
Q Consensus       313 ~~~~~d--------g~i~i~d~-~~~~~~~~~~~~~~~~~~~v~~~~  350 (389)
                      ++....        +..+++.+ .+++.+.++..  ...-+.+..++
T Consensus       228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~--~~~~~~~~~~~  272 (276)
T 3no2_A          228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND--KVKFGMISTIC  272 (276)
T ss_dssp             EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC--TTTSCCCCEEE
T ss_pred             EEeccCccccccccCCceEEEECCCCCEEEEecC--cccccceeeee
Confidence            877421        23456666 57888888754  23345566654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.80  E-value=2.4e-17  Score=135.61  Aligned_cols=241  Identities=10%  Similarity=-0.007  Sum_probs=166.6

Q ss_pred             cEEEEEEcCCCCeEE-EEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458           69 KVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (389)
                      ...++++++++++++ +.+.++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+|+.....     
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~-----   98 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN-----   98 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC-----
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce-----
Confidence            688999999998777 546788999999765543322222334678899999999666665 8899999987632     


Q ss_pred             CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (389)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (389)
                        ...........+..+++.+++ .++++...++.|.+|+..+.......     ......+..+++++ +++++++...
T Consensus        99 --~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~p~~i~~~~-~g~l~v~~~~  169 (270)
T 1rwi_B           99 --QTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLP-----FTGLNDPDGVAVDN-SGNVYVTDTD  169 (270)
T ss_dssp             --CEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECC-----CCSCCSCCCEEECT-TCCEEEEEGG
T ss_pred             --EeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeec-----cccCCCceeEEEeC-CCCEEEEECC
Confidence              111111223567899999987 56777677889999986655433222     22334678899998 6777777777


Q ss_pred             CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC
Q 016458          228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  307 (389)
Q Consensus       228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (389)
                      ++.|.+||.... ........+...+.+++++++|.++++...++.|.+||........ ...    .....+.++++++
T Consensus       170 ~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~----~~~~~p~~i~~~~  243 (270)
T 1rwi_B          170 NNRVVKLEAESN-NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF----TGLNTPLAVAVDS  243 (270)
T ss_dssp             GTEEEEECTTTC-CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC----CSCSCEEEEEECT
T ss_pred             CCEEEEEecCCC-ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc----CCCCCceeEEECC
Confidence            889999998755 2222112233568899999999877777778999999987644322 111    1123478999999


Q ss_pred             CCCEEEEEecCCcEEEEEcccce
Q 016458          308 SGRLLFAGYSNGDCYVWDTLLAK  330 (389)
Q Consensus       308 ~~~~l~~~~~dg~i~i~d~~~~~  330 (389)
                      +|+++++...++.|+++++...+
T Consensus       244 ~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          244 DRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             TCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCCEEEEECCCCEEEEEcCCCcc
Confidence            99988888889999999987654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.80  E-value=1.2e-15  Score=130.61  Aligned_cols=278  Identities=11%  Similarity=0.009  Sum_probs=187.3

Q ss_pred             EcCCCCeEEEEec--CC---cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec----------CCCcEEEEeCC
Q 016458           75 WTSERNRIVSASQ--DG---RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNLN  139 (389)
Q Consensus        75 ~~~~~~~l~~~~~--dg---~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~~  139 (389)
                      ..|++++++++..  .+   +|.++|..+++.+..+.....+  .++++|++++++++.          .++.|.+||..
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            3466766666553  22   7899999999988877765554  999999999999885          36789999997


Q ss_pred             CCCCCCCCCcceeeeccc-------ccceEEEEEeeCCCcEEEEee-C-CCeEEEEeCCCCeeEEE-ecCcccCCCCCCe
Q 016458          140 SPTDKDGNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLITSS-G-DQTCVLWDITTGLRTSV-FGGEFQSGHTADV  209 (389)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~v  209 (389)
                      +.+       ....+...       ......+.++|++ ++|+.+. . ++.|.++| .+++.... +.     . ..  
T Consensus       106 t~~-------~~~~i~~~~~~~~~~g~~p~~~~~spDG-~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-----~-~~--  168 (373)
T 2mad_H          106 TFL-------PIADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-----S-PT--  168 (373)
T ss_pred             CCc-------EEEEEECCCccccccCCCccceEECCCC-CEEEEEecCCCCeEEEEE-CCCCEEeEEcC-----C-Cc--
Confidence            643       22222110       1234578999998 4566555 3 58899999 99988777 52     1 11  


Q ss_pred             eEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-----eeccc-eEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-----GHEGD-VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (389)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (389)
                       ++.+.|.....+++.+.||.+.++|. ++ +......     ....+ .....+.+++..++..+.++.+.+.|+....
T Consensus       169 -~~~~~~~~~~~~~~~~~dg~~~~vd~-~g-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~  245 (373)
T 2mad_H          169 -CYHIHPGAPSTFYLLCAQGGLAKTDH-AG-GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG  245 (373)
T ss_pred             -eEEEEeCCCceEEEEcCCCCEEEEEC-CC-cEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCc
Confidence             24455545667778888999999999 55 3332211     11112 1234566766655555578899999987553


Q ss_pred             e--eeEeeccCC-----CCCCCCeeEEEeCCCCCEEEEEec----------CCcEEEEEcccceEEEeecCcCCCCCCCe
Q 016458          284 Q--LQVYYQQHG-----ENEIPHVTSIAFSISGRLLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRI  346 (389)
Q Consensus       284 ~--~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  346 (389)
                      .  ...+.....     .........+.++|+++.++++..          ++.|.++|+.+++.+..+.     .....
T Consensus       246 ~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-----~g~~p  320 (373)
T 2mad_H          246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-----LGHDV  320 (373)
T ss_pred             ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-----CCCCc
Confidence            2  122211000     000112345789999998888654          3579999999999988883     22357


Q ss_pred             eEEEECCCCC-eEEeee-CCCeeEEeecceecccCcccC
Q 016458          347 TCLGLSADGS-ALCTGS-WDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       347 ~~~~~~~~~~-~l~~~~-~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      .+++|+|||+ +++++. .++.|.+    +|+.+++...
T Consensus       321 ~~i~~s~Dg~~~l~v~~~~~~~V~V----iD~~t~~vv~  355 (373)
T 2mad_H          321 DAISVAQDGGPDLYALSAGTEVLHI----YDAGAGDQDQ  355 (373)
T ss_pred             CeEEECCCCCeEEEEEcCCCCeEEE----EECCCCCEEe
Confidence            8999999999 788777 4899999    9999988654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.80  E-value=2.8e-15  Score=125.21  Aligned_cols=277  Identities=7%  Similarity=-0.012  Sum_probs=189.9

Q ss_pred             cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe--eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458           63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS  140 (389)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~  140 (389)
                      +......+.+++++++|++.++...++.|.+||.. ++... +.  .....+..+++.+++.++++...++.|..||.. 
T Consensus        15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-   91 (300)
T 2qc5_A           15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-   91 (300)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence            33455678999999999888877778999999987 55433 32  223568999999999988877778889999876 


Q ss_pred             CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (389)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (389)
                      +.     . ...........+.++++.+++ .++++...++.|..+|.. +.......    ......+..+++.+ +++
T Consensus        92 g~-----~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~----~~~~~~~~~i~~d~-~g~  158 (300)
T 2qc5_A           92 GG-----F-TEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYEYDL----PNKGSYPAFITLGS-DNA  158 (300)
T ss_dssp             SC-----E-EEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEEEEC----SSTTCCEEEEEECT-TSS
T ss_pred             CC-----e-EEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEEccC----CCCCCCceeEEECC-CCC
Confidence            32     1 111222234568899999887 566666668899999987 54443211    22345688999998 677


Q ss_pred             EEEEeeCCCceEEEeCCCCCcceeEEe--eeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCC
Q 016458          221 MFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP  298 (389)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  298 (389)
                      ++++...++.|..+|.. . ... .+.  .+...+..+++++++.+.++....+.|.+||. ++..... ...   ....
T Consensus       159 l~v~~~~~~~i~~~~~~-g-~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~---~~~~  230 (300)
T 2qc5_A          159 LWFTENQNNSIGRITNT-G-KLE-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIP---TPNA  230 (300)
T ss_dssp             EEEEETTTTEEEEECTT-C-CEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECS---STTC
T ss_pred             EEEEecCCCeEEEECCC-C-cEE-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECC---CCCC
Confidence            77766667889999983 3 222 222  23346889999999987777767788999998 4443332 111   1123


Q ss_pred             CeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      .+.+++++++|++.++...++.|..||. ++... .+..  ......+.+++++++|.+.++.. . .|..
T Consensus       231 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~--~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~  295 (300)
T 2qc5_A          231 RPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQL--QTENAEPHGITFGKDGSVWFALK-C-KIGK  295 (300)
T ss_dssp             CEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEEC--CSTTCCCCCEEECTTSCEEEECS-S-EEEE
T ss_pred             CceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEEC--CccCCccceeEeCCCCCEEEEcc-C-ceEE
Confidence            4789999999986666656789999998 44433 2211  23345688999999998666655 4 5544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.80  E-value=1.1e-18  Score=151.92  Aligned_cols=261  Identities=11%  Similarity=-0.003  Sum_probs=168.6

Q ss_pred             EEEeCCCCCeeEEEeeCCCc-----EEEEEECCCCcEEEEecCC---CcEEEEeCCCCCCCCCCCcceeeecccccceEE
Q 016458           92 IVWNALTSQKTHAIKLPCAW-----VMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC  163 (389)
Q Consensus        92 ~iw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~  163 (389)
                      ...|..++..+..+..+...     +..++|+|+|++|+.....   ..|.+|++.++.       .......+......
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~-------~~~l~~~~~~~~~~   85 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ-------AVQLTEGKGDNTFG   85 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE-------EEECCCSSCBCTTT
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc-------EEEeecCCCCcccc
Confidence            34477777777666554333     6678999999998776543   368888887643       22222222222333


Q ss_pred             EEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeE-------------------EEeeCCCCcEEEE
Q 016458          164 CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS-------------------VSISGSNSRMFVS  224 (389)
Q Consensus       164 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~  224 (389)
                      +.|+|++ +.|+.++.++.|++||+.+++......     .+......                   +.++| +++.++.
T Consensus        86 ~~~spdg-~~l~~~~~~~~l~~~d~~~~~~~~~~~-----~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~  158 (396)
T 3c5m_A           86 GFISTDE-RAFFYVKNELNLMKVDLETLEEQVIYT-----VDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKF  158 (396)
T ss_dssp             CEECTTS-SEEEEEETTTEEEEEETTTCCEEEEEE-----CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHH
T ss_pred             ceECCCC-CEEEEEEcCCcEEEEECCCCCcEEEEe-----cccccCCCCCEEEeccCCccccccccccccCC-CCcceee
Confidence            7899998 678888888899999999887665542     22221111                   23455 4444433


Q ss_pred             e-----eCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecC------CeEEEEECCCCceeeEeeccC
Q 016458          225 G-----SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQH  292 (389)
Q Consensus       225 ~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~  292 (389)
                      .     ..+..|++||+.++ +. ..+..+...+..+.|+| ++..|+..+.+      ..|.+||+..+.... +....
T Consensus       159 ~~~~~~~~~~~l~~~d~~~g-~~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~  235 (396)
T 3c5m_A          159 AEFYHTNPTCRLIKVDIETG-EL-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHA  235 (396)
T ss_dssp             HHHHHTCCCEEEEEEETTTC-CE-EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCC
T ss_pred             eeeccCCCcceEEEEECCCC-cE-EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccC
Confidence            2     35668999999865 33 33445677899999999 78877766543      368899987654322 22211


Q ss_pred             CCCCCCCeeEEEeCCCCCEEEEEecC-----CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC-CCCeEEeee----
Q 016458          293 GENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGS----  362 (389)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----  362 (389)
                         ....+..++|+|+|++|+.++.+     +.|++||+.+++......    ..  ... +.|+| ||+++++++    
T Consensus       236 ---~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~----~~--~~~-~~~s~~dg~~l~~~~~~~p  305 (396)
T 3c5m_A          236 ---EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV----MP--PCS-HLMSNFDGSLMVGDGCDAP  305 (396)
T ss_dssp             ---TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE----CC--SEE-EEEECSSSSEEEEEECCC-
T ss_pred             ---CCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee----CC--CCC-CCccCCCCceEEEecCCcc
Confidence               01137789999999987766543     349999998876543321    11  123 88999 999888755    


Q ss_pred             ------------CCCeeEEeecceecccCcccC
Q 016458          363 ------------WDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       363 ------------~dg~i~i~~~~W~~~~~~~~~  383 (389)
                                  .++.|.+    |++.++++..
T Consensus       306 ~~~~~~~~~~~~~~~~i~~----~d~~~~~~~~  334 (396)
T 3c5m_A          306 VDVADADSYNIENDPFLYV----LNTKAKSAQK  334 (396)
T ss_dssp             ---------CCCCCCEEEE----EETTTTBCCE
T ss_pred             eeeccccccccCCCCcEEE----EecccCceEE
Confidence                        3467888    9998886543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.80  E-value=1.8e-16  Score=133.75  Aligned_cols=279  Identities=16%  Similarity=0.179  Sum_probs=192.2

Q ss_pred             cccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEe----------cCCcEEEEeCCCCCeeEEEeeCC-------CcE
Q 016458           50 VSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLPC-------AWV  112 (389)
Q Consensus        50 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~~-------~~v  112 (389)
                      ...++...+.+.++..-..+  .++++|||+++++++          .++.|.+||..+++.+..+....       ...
T Consensus        62 ~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P  139 (386)
T 3sjl_D           62 FVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYP  139 (386)
T ss_dssp             EEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCG
T ss_pred             EEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCC
Confidence            34566667777777765555  499999999888775          36789999999999998887543       245


Q ss_pred             EEEEECCCCcEEEEecC--CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC
Q 016458          113 MTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT  190 (389)
Q Consensus       113 ~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  190 (389)
                      ..++|+|+|++++++..  ++.|.++|+.+.+       ....+... +   |....|.+...+++.+.||.+.+.++.+
T Consensus       140 ~~~a~spDGk~lyVan~~~~~~VsVID~~t~~-------vv~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~  208 (386)
T 3sjl_D          140 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-------FKRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGT  208 (386)
T ss_dssp             GGEEECTTSSEEEEEECSSSCEEEEEETTTTE-------EEEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred             ceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc-------EEEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCC
Confidence            67999999999988864  6899999998855       44444321 1   1223455556788889999999999986


Q ss_pred             -CeeEEEecCcccCCCCCCee-EEEeeCCCCcEEEEeeCCCceEEEeCCCCCc-ceeEEe----------eeccceEEEE
Q 016458          191 -GLRTSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFH----------GHEGDVNTVK  257 (389)
Q Consensus       191 -~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~----------~~~~~i~~~~  257 (389)
                       ++...... ........++. ...|.+.++++++ .+.+|.|++.|...... ....+.          ........++
T Consensus       209 ~g~v~~~~~-~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a  286 (386)
T 3sjl_D          209 EGTPEITHT-EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA  286 (386)
T ss_dssp             SSCCEEEEC-CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred             CCeEEEeec-ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceee
Confidence             55433221 11111112222 2456543665555 45589999999975421 222221          0123345578


Q ss_pred             EecCCCEEEEEec----------CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEe-cCCcEEEEE
Q 016458          258 FFPDGNRFGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVWD  325 (389)
Q Consensus       258 ~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~i~d  325 (389)
                      ++|+++.+++...          .+.|.++|+.+++.+..+....      .+..+++++|++ +|+++. .++.|.++|
T Consensus       287 ~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~------~~~~lavs~D~~~~ly~tn~~~~~VsViD  360 (386)
T 3sjl_D          287 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH------EIDSINVSQDEKPLLYALSTGDKTLYIHD  360 (386)
T ss_dssp             EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE------EECEEEECSSSSCEEEEEETTTTEEEEEE
T ss_pred             ECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC------CcceEEECCCCCeEEEEEcCCCCeEEEEE
Confidence            8999998888753          2579999999999998887654      278999999997 777754 488999999


Q ss_pred             cccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458          326 TLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (389)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (389)
                      ..+++.+.++..  .   +....|.+++|
T Consensus       361 ~~t~k~~~~i~~--~---~~p~~l~~s~d  384 (386)
T 3sjl_D          361 AESGEELRSVNQ--L---GHGPQVITTAD  384 (386)
T ss_dssp             TTTCCEEEEECC--C---CSSCCEEEECC
T ss_pred             CCCCcEEEEecC--C---CCCceeEECCc
Confidence            999999999853  2   33345666665

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.79  E-value=5.1e-15  Score=126.71  Aligned_cols=264  Identities=11%  Similarity=0.044  Sum_probs=182.7

Q ss_pred             cccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEe----------cCCcEEEEeCCCCCeeEEEeeC-------CCcE
Q 016458           50 VSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLP-------CAWV  112 (389)
Q Consensus        50 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~-------~~~v  112 (389)
                      ..+++...+...++..-..+  .++++|||++|+++.          .++.|.+||..+.+.+..+...       ....
T Consensus        50 ~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p  127 (373)
T 2mad_H           50 WVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS  127 (373)
T ss_pred             EEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCc
Confidence            45666677777777655555  999999999998886          3678999999998888877654       1235


Q ss_pred             EEEEECCCCcEEEEecC--CCcEEEEeCCCCCCCCCCCcceee-ecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          113 MTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       113 ~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                      ..++|+|+|++|+++..  ++.|.++| .+++       .... +.. .   .++.+.|+++..+++.+.||.+.++|. 
T Consensus       128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~-------~~~~~i~~-~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-  194 (373)
T 2mad_H          128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGS-------SDDQLLSS-P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-  194 (373)
T ss_pred             cceEECCCCCEEEEEecCCCCeEEEEE-CCCC-------EEeEEcCC-C---ceEEEEeCCCceEEEEcCCCCEEEEEC-
Confidence            68999999999998874  57899999 7754       3333 221 1   135566777677888889999999999 


Q ss_pred             CCeeEEEecCcccCCCCCC-eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc-ceeEEee----------eccceEEEE
Q 016458          190 TGLRTSVFGGEFQSGHTAD-VLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFHG----------HEGDVNTVK  257 (389)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~----------~~~~i~~~~  257 (389)
                      +++...............+ .....+.+.++.++++. .++.+.+.|+..... .+..+..          .......+.
T Consensus       195 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~  273 (373)
T 2mad_H          195 AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA  273 (373)
T ss_pred             CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEE
Confidence            7766643310000011112 12344555444444444 678999999865421 1122211          112244578


Q ss_pred             EecCCCEEEEEec----------CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEe-cCCcEEEEE
Q 016458          258 FFPDGNRFGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVWD  325 (389)
Q Consensus       258 ~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~i~d  325 (389)
                      ++|+++.++++..          ++.|.++|+.+++.+..+....      ....++|+|||+ .++++. .++.|.++|
T Consensus       274 ~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~------~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD  347 (373)
T 2mad_H          274 YLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH------DVDAISVAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             ECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC------CcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence            9999998887653          3579999999999888885543      268999999999 777777 489999999


Q ss_pred             cccceEEEee
Q 016458          326 TLLAKVVLNL  335 (389)
Q Consensus       326 ~~~~~~~~~~  335 (389)
                      +.+++.+..+
T Consensus       348 ~~t~~vv~~i  357 (373)
T 2mad_H          348 AGAGDQDQST  357 (373)
T ss_pred             CCCCCEEeee
Confidence            9999998874

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.78  E-value=1.9e-16  Score=147.83  Aligned_cols=281  Identities=12%  Similarity=0.047  Sum_probs=177.5

Q ss_pred             CCCCeEEEEecCC---cEEEE--eCCCCCeeEEEe------eCCCcEEEEEECCCCcEEEE-----ecCCCcEEEEeCCC
Q 016458           77 SERNRIVSASQDG---RLIVW--NALTSQKTHAIK------LPCAWVMTCAFSPTGQSVAC-----GGLDSVCSIFNLNS  140 (389)
Q Consensus        77 ~~~~~l~~~~~dg---~v~iw--~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~-----~~~dg~i~vw~~~~  140 (389)
                      |+|++++....++   .-.+|  +...++....+.      .|...+..++|||||++|+.     |+.+..|++||+.+
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            5666665554432   23334  443444333222      23346889999999999983     44457899999998


Q ss_pred             CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe-------------EEEEeCCCCee--EEEecCcccCCC
Q 016458          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT-------------CVLWDITTGLR--TSVFGGEFQSGH  205 (389)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------i~iwd~~~~~~--~~~~~~~~~~~~  205 (389)
                      +....     ...+...  ....++|+|++ +.|+.++.+..             |++|++.++..  ...+..   ..+
T Consensus       157 g~~~~-----~~~~~~~--~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~---~~~  225 (695)
T 2bkl_A          157 GEWSK-----VDVIEGG--KYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER---TGD  225 (695)
T ss_dssp             CCBCS-----SCCBSCC--TTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC---CCC
T ss_pred             CCCcC-----CcccCcc--cccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec---CCC
Confidence            65210     0011111  12578999998 56777777665             99999998762  222211   344


Q ss_pred             CCCeeEEEeeCCCCcEEEEeeCCC----ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe---cCCeEEEEE
Q 016458          206 TADVLSVSISGSNSRMFVSGSCDS----TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFD  278 (389)
Q Consensus       206 ~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d  278 (389)
                      ...+..+.|+| ++++|+.++.++    .|+++|....  ....+..+...+....+ +++.+++...   .++.|.+||
T Consensus       226 ~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~--~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d  301 (695)
T 2bkl_A          226 PTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEK--DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVD  301 (695)
T ss_dssp             TTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCS--SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEB
T ss_pred             CEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCC--ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEe
Confidence            56788999999 666666666555    6777765433  45556666666666666 5666444433   258899999


Q ss_pred             CCCCce--eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc-cceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458          279 IRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITCLGLSADG  355 (389)
Q Consensus       279 ~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (389)
                      +.++..  ...+....   ....+..++|+ ++.++++...|+..++|.+. .++....+.   ....+.+..++++|++
T Consensus       302 ~~~~~~~~~~~l~~~~---~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~---~~~~~~v~~~~~s~d~  374 (695)
T 2bkl_A          302 PAKPARASWKEIVPED---SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ---LPGVGAASNLMGLEDL  374 (695)
T ss_dssp             TTBCSGGGCEEEECCC---SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECC---CSSSSEECCCBSCTTC
T ss_pred             CCCCCccCCeEEecCC---CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec---CCCCeEEEEeecCCCC
Confidence            987653  22332221   11237778887 67788888899988887655 355555552   2236678889999999


Q ss_pred             CeEE----eeeCCCeeEEeecceecccCcccC
Q 016458          356 SALC----TGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       356 ~~l~----~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      ..++    +....+.|++    ||+.+|+...
T Consensus       375 ~~l~~~~ss~~~P~~v~~----~d~~~g~~~~  402 (695)
T 2bkl_A          375 DDAYYVFTSFTTPRQIYK----TSVSTGKSEL  402 (695)
T ss_dssp             SEEEEEEEETTEEEEEEE----EETTTCCEEE
T ss_pred             CEEEEEEcCCCCCCEEEE----EECCCCcEEE
Confidence            8777    3334578998    9999887543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.77  E-value=1.1e-15  Score=129.17  Aligned_cols=263  Identities=8%  Similarity=-0.010  Sum_probs=179.1

Q ss_pred             CCcccCCCcceeeeecc------cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCC
Q 016458           48 APVSFGPTDLVCCRTLQ------GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG  121 (389)
Q Consensus        48 ~~~~~~~~~~~~~~~l~------~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~  121 (389)
                      ....+++...+....+.      ........+++.. ++.+++...++.|.+||..+++.+..+.. ......+++++++
T Consensus        18 ~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g   95 (328)
T 3dsm_A           18 TLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDE   95 (328)
T ss_dssp             EEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETT
T ss_pred             eEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCC
Confidence            34456666655555442      1223467788753 44556666679999999999999888853 4568899999988


Q ss_pred             cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccc-----cceEEEEEeeCCCcEEEEee-CCCeEEEEeCCCCeeEE
Q 016458          122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-----GYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTGLRTS  195 (389)
Q Consensus       122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~  195 (389)
                      +.+++...++.|.+||..+.+       ....+....     .....+++ . ++.++++.. .++.|.++|+.+++...
T Consensus        96 ~lyv~~~~~~~v~~iD~~t~~-------~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~  166 (328)
T 3dsm_A           96 KAYVTQIWDYRIFIINPKTYE-------ITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVD  166 (328)
T ss_dssp             EEEEEEBSCSEEEEEETTTTE-------EEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEE
T ss_pred             eEEEEECCCCeEEEEECCCCe-------EEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEE
Confidence            555554478999999998744       333332211     14456666 3 335555544 48999999999998887


Q ss_pred             EecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC----------CceEEEeCCCCCcceeEEeee-ccceEEEEEecCCCE
Q 016458          196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----------STARLWDTRVASRAVRTFHGH-EGDVNTVKFFPDGNR  264 (389)
Q Consensus       196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~  264 (389)
                      .+..      ......+.++| ++++++++..+          +.|.++|..+. +....+... ......++|+|+++.
T Consensus       167 ~i~~------g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~~~~~~~~g~~p~~la~~~d~~~  238 (328)
T 3dsm_A          167 ELTI------GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-TVEKQFKFKLGDWPSEVQLNGTRDT  238 (328)
T ss_dssp             EEEC------SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-EEEEEEECCTTCCCEEEEECTTSCE
T ss_pred             EEEc------CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCC-eEEEEEecCCCCCceeEEEecCCCE
Confidence            7632      23456788888 77777776654          78999999876 555454422 236789999999999


Q ss_pred             EEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC-CCEEEEE----ecCCcEEEEEcccceEEEee
Q 016458          265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAG----YSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~----~~dg~i~i~d~~~~~~~~~~  335 (389)
                      |+++..  .|.+||..+++.........   .......++++|+ +.++++.    ..++.|.+||.. ++.+..+
T Consensus       239 lyv~~~--~v~~~d~~t~~~~~~~~~~~---~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          239 LYWINN--DIWRMPVEADRVPVRPFLEF---RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             EEEESS--SEEEEETTCSSCCSSCSBCC---CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             EEEEcc--EEEEEECCCCceeeeeeecC---CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence            988765  89999998876532111110   1234789999995 4455554    467899999997 8888777

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.77  E-value=8.6e-16  Score=129.64  Aligned_cols=280  Identities=11%  Similarity=0.026  Sum_probs=191.1

Q ss_pred             EcCCCCeEEEEec-----CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec----------CCCcEEEEeCC
Q 016458           75 WTSERNRIVSASQ-----DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNLN  139 (389)
Q Consensus        75 ~~~~~~~l~~~~~-----dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~~  139 (389)
                      ..|+++.+++...     ++.|.+.|..+++.+..+.....+ . ++++|+|++++++.          .++.|.+||..
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~  117 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV  117 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence            4578887777654     679999999999999999877776 4 99999999988775          36789999998


Q ss_pred             CCCCCCCCCcceeeeccc-------ccceEEEEEeeCCCcEEEEee--CCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458          140 SPTDKDGNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLITSS--GDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (389)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  210 (389)
                      +.+       ....+.-.       ......+.++|+|. +++.+.  .++.|.++|+.+++.+..+..     . + . 
T Consensus       118 t~~-------v~~~I~v~~g~r~~~g~~P~~~a~spDGk-~lyVan~~~~~~VsVID~~t~~vv~tI~v-----~-g-~-  181 (386)
T 3sjl_D          118 TLL-------PTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDV-----P-D-C-  181 (386)
T ss_dssp             TCC-------EEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEEC-----C-S-E-
T ss_pred             CCe-------EEEEEECCCccccccCCCCceEEEcCCCC-EEEEEEcCCCCeEEEEECCCCcEEEEEEC-----C-C-c-
Confidence            754       33333211       12345689999984 555554  378999999999999988832     1 1 1 


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec----cce-EEEEEe-cCCCEEEEEecCCeEEEEECCCCce
Q 016458          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE----GDV-NTVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQ  284 (389)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~i-~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~  284 (389)
                       ..+.|...+.+++.+.||.+.+.++....+.......+-    .++ ....|. ++|++++ .+.+|.|++.|+.+...
T Consensus       182 -~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~  259 (386)
T 3sjl_D          182 -YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA  259 (386)
T ss_dssp             -EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC
T ss_pred             -ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc
Confidence             222344566777888899999999876324322111111    122 124564 5775544 55689999999976542


Q ss_pred             --eeEeeccC-----CCCCCCCeeEEEeCCCCCEEEEEec----------CCcEEEEEcccceEEEeecCcCCCCCCCee
Q 016458          285 --LQVYYQQH-----GENEIPHVTSIAFSISGRLLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRIT  347 (389)
Q Consensus       285 --~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  347 (389)
                        ...+....     ..-.......++++++++.+++...          .+.|.++|+.+++.+..+.     -...+.
T Consensus       260 ~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~-----vg~~~~  334 (386)
T 3sjl_D          260 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-----MGHEID  334 (386)
T ss_dssp             EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-----EEEEEC
T ss_pred             eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE-----CCCCcc
Confidence              22221000     0000112345778999998888653          2479999999999999884     223788


Q ss_pred             EEEECCCCC-eEEee-eCCCeeEEeecceecccCcccC
Q 016458          348 CLGLSADGS-ALCTG-SWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       348 ~~~~~~~~~-~l~~~-~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      +|++++|++ +|+++ ..++.|.+    +|..++++..
T Consensus       335 ~lavs~D~~~~ly~tn~~~~~VsV----iD~~t~k~~~  368 (386)
T 3sjl_D          335 SINVSQDEKPLLYALSTGDKTLYI----HDAESGEELR  368 (386)
T ss_dssp             EEEECSSSSCEEEEEETTTTEEEE----EETTTCCEEE
T ss_pred             eEEECCCCCeEEEEEcCCCCeEEE----EECCCCcEEE
Confidence            999999997 66664 45899999    9999998753

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.77  E-value=4.1e-17  Score=152.27  Aligned_cols=250  Identities=10%  Similarity=-0.009  Sum_probs=164.2

Q ss_pred             cccCcEEEEEEcCCCCeEE-----EEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCc-------
Q 016458           65 GHAGKVYSLDWTSERNRIV-----SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV-------  132 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~-----~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------  132 (389)
                      +|...+.+++|||||++||     .|+.+..|++||+.+++.+............++|+|+|+.|+.++.+..       
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            4666799999999999998     3444568999999998865111111111267899999999999988765       


Q ss_pred             ------EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC----eEEEEeCCCCeeEEEecCccc
Q 016458          133 ------CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ----TCVLWDITTGLRTSVFGGEFQ  202 (389)
Q Consensus       133 ------i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~  202 (389)
                            |++|++.++...   .........+...+..+.|+|+| ++++.++.++    .|.+|+..++......     
T Consensus       198 ~~~~~~v~~~~l~t~~~~---~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~-----  268 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSK---DTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDFRLLV-----  268 (695)
T ss_dssp             GGGGCEEEEEETTSCGGG---CEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSCEEEE-----
T ss_pred             CCCCCEEEEEECCCCchh---ceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCceEEee-----
Confidence                  999999875411   11222333455678899999998 4555555444    6777776655444333     


Q ss_pred             CCCCCCeeEEEeeCCCCcEEEEee---CCCceEEEeCCCCCc-ceeEEeee--ccceEEEEEecCCCEEEEEecCCeEEE
Q 016458          203 SGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASR-AVRTFHGH--EGDVNTVKFFPDGNRFGTGSDDGTCRL  276 (389)
Q Consensus       203 ~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~-~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i  276 (389)
                       .+...+....+ + ++.+++.+.   .++.|.+||+.++.. ....+..+  ...+..++|+ ++.++++...|+..++
T Consensus       269 -~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l  344 (695)
T 2bkl_A          269 -KGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEV  344 (695)
T ss_dssp             -ECSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred             -cCCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence             23344555555 4 344555544   257899999976521 12344433  4457888888 6778888889998888


Q ss_pred             EECC-CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe----cCCcEEEEEcccceE
Q 016458          277 FDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY----SNGDCYVWDTLLAKV  331 (389)
Q Consensus       277 ~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~  331 (389)
                      |.+. ++.....+...    ....+..+.++|+++.++...    ..+.|++||+.+++.
T Consensus       345 ~~~~~~g~~~~~l~~~----~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          345 RVATLKGKPVRTVQLP----GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEETTCCEEEECCCS----SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEeCCCCeeEEecCC----CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            7655 34444443221    122477788999998776443    246899999987764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.76  E-value=2.4e-16  Score=134.67  Aligned_cols=223  Identities=9%  Similarity=0.109  Sum_probs=148.9

Q ss_pred             CcEEEEEEcCCCCeEEEEecC---C--cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC------------
Q 016458           68 GKVYSLDWTSERNRIVSASQD---G--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD------------  130 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~d---g--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------  130 (389)
                      ..+..++|+|||++|+.++.+   +  .|.+|++.+++.......+ . +..++|+|+|+.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            458889999999999887754   3  3778888887765555444 3 9999999999998887632            


Q ss_pred             ---------------CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC---------CeEEEE
Q 016458          131 ---------------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---------QTCVLW  186 (389)
Q Consensus       131 ---------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~iw  186 (389)
                                     ..|.+|++.++.       ....+.. . .+..+.|+|++  +++++..+         ..|.++
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~-------~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~  205 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEE-------VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIW  205 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTE-------EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEE
T ss_pred             cceeecCcccccCccceEEEEECCCCe-------EEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEe
Confidence                           568889987643       2123333 3 78889999987  66666543         245555


Q ss_pred             eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC--------CceEEEeCCCCCcceeEEeeeccceEE-EE
Q 016458          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRVASRAVRTFHGHEGDVNT-VK  257 (389)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~i~~-~~  257 (389)
                      |  +++.....      .+ ..+..+  +| +++.|+.++.+        ..|.+||  ++ ........+...+.. +.
T Consensus       206 d--~~~~~~l~------~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~-~~~~l~~~~~~~~~~~~~  270 (347)
T 2gop_A          206 E--DGKEEKMF------EK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GK-EVMGILDEVDRGVGQAKI  270 (347)
T ss_dssp             E--TTEEEEEE------EE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SS-CEEESSTTCCSEEEEEEE
T ss_pred             C--CCceEEec------cC-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CC-ceEeccccCCcccCCccE
Confidence            5  55443332      22 344444  88 66666655543        3677888  32 333333345667776 89


Q ss_pred             EecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcE-EEEEcccce
Q 016458          258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC-YVWDTLLAK  330 (389)
Q Consensus       258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i-~i~d~~~~~  330 (389)
                      |+ ++ ++++++.++.+++| +.+++.. .+...     ...+.+++|+|  .++++++.++.. .+|.+. ++
T Consensus       271 ~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~-----~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~  332 (347)
T 2gop_A          271 KD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKG-----RHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE  332 (347)
T ss_dssp             ET-TE-EEEEEEETTEEEEE-EESSSEE-EEECS-----SSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred             Ec-Cc-EEEEEecCCcEEEE-EcCCceE-EEecC-----CCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence            99 88 88999999999999 8755443 33222     22488999999  677777777654 777765 44

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.76  E-value=9.3e-16  Score=125.79  Aligned_cols=218  Identities=11%  Similarity=-0.021  Sum_probs=165.4

Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccc-cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec
Q 016458          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (389)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  198 (389)
                      .+++|++++.++.|.+||.++++       ....+..+. ..+.++.+.|+| ++++  +.++.|..||. +++.+..+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~-------~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~~   72 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKE-------IVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNIA   72 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTE-------EEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCe-------EEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEEc
Confidence            46889999999999999997765       455555554 468889999998 5666  45788999999 788888874


Q ss_pred             CcccCCCCCCeeEEEeeCCCCcEEEEeeC-CCceEEEeCCCCCcceeEEee------eccceEEEEEecCCCEEEEEecC
Q 016458          199 GEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVASRAVRTFHG------HEGDVNTVKFFPDGNRFGTGSDD  271 (389)
Q Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d  271 (389)
                      .    .....+.++.+.+ +++++++.+. ++.+..+|.. + +.+..+..      +......+++.++|+++++...+
T Consensus        73 ~----~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~-G-k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~  145 (276)
T 3no2_A           73 A----PAGCEMQTARILP-DGNALVAWCGHPSTILEVNMK-G-EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFAT  145 (276)
T ss_dssp             C----CTTCEEEEEEECT-TSCEEEEEESTTEEEEEECTT-S-CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTT
T ss_pred             C----CCCccccccEECC-CCCEEEEecCCCCEEEEEeCC-C-CEEEEEeccCCCCcccccccCceECCCCCEEEEecCC
Confidence            2    2234678888998 8888888776 7778777753 3 55555432      22345567889999999999999


Q ss_pred             CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC--CCCCCCeeEE
Q 016458          272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--NSHEGRITCL  349 (389)
Q Consensus       272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~  349 (389)
                      +.|..||.. ++.+..+....      ...++.+.++|++++++..++.|..+|..+++.+.++....  ......+..+
T Consensus       146 ~~v~~~d~~-G~~~w~~~~~~------~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~  218 (276)
T 3no2_A          146 SEVREIAPN-GQLLNSVKLSG------TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQL  218 (276)
T ss_dssp             TEEEEECTT-SCEEEEEECSS------CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEE
T ss_pred             CEEEEECCC-CCEEEEEECCC------CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccc
Confidence            999999988 88888876542      24567888999999999888899999999999999884210  1122347888


Q ss_pred             EECCCCCeEEeee
Q 016458          350 GLSADGSALCTGS  362 (389)
Q Consensus       350 ~~~~~~~~l~~~~  362 (389)
                      +..++|..+++..
T Consensus       219 ~~~~~G~i~v~~~  231 (276)
T 3no2_A          219 FPLQNGGLYICNW  231 (276)
T ss_dssp             EECTTSCEEEEEE
T ss_pred             eEcCCCCEEEEec
Confidence            9999999888763

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.74  E-value=2.8e-14  Score=119.05  Aligned_cols=246  Identities=9%  Similarity=0.018  Sum_probs=171.9

Q ss_pred             CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCccee-eecccccceEEEEEeeCCCcEEEEeeCCCeEEEE
Q 016458          108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR-MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW  186 (389)
Q Consensus       108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  186 (389)
                      +...+.++++.++|+++++...++.|.+|+.. +.       ... ....+...+.++++.+++ .++++...++.|..|
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~   83 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-------ITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRI   83 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-------EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEE
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-------eEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEE
Confidence            34568999999999988877778899999987 32       111 112244678899999987 566666668899999


Q ss_pred             eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCccee-EEeeeccceEEEEEecCCCEE
Q 016458          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFPDGNRF  265 (389)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l  265 (389)
                      |.. +.. ..+..   ......+..+++.+ ++.++++...++.|..||. .+ .... ........+..+++++++.++
T Consensus        84 ~~~-g~~-~~~~~---~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g-~~~~~~~~~~~~~~~~i~~~~~g~l~  155 (299)
T 2z2n_A           84 TKK-GII-KEYTL---PNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DG-KIREYELPNKGSYPSFITLGSDNALW  155 (299)
T ss_dssp             CTT-SCE-EEEEC---SSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTSCEE
T ss_pred             CCC-CcE-EEEeC---CCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CC-CEEEecCCCCCCCCceEEEcCCCCEE
Confidence            986 332 22211   22445788999998 7778777777889999998 33 2221 122234568999999999888


Q ss_pred             EEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCC
Q 016458          266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR  345 (389)
Q Consensus       266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  345 (389)
                      ++...++.|..||. +++... +...   .....+..++++++|++.++...++.|.+||. +++......   ..+...
T Consensus       156 v~~~~~~~i~~~~~-~g~~~~-~~~~---~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~---~~~~~~  226 (299)
T 2z2n_A          156 FTENQNNAIGRITE-SGDITE-FKIP---TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKI---PTPNAR  226 (299)
T ss_dssp             EEETTTTEEEEECT-TCCEEE-EECS---STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC---SSTTCC
T ss_pred             EEeCCCCEEEEEcC-CCcEEE-eeCC---CCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEEC---CCCCCC
Confidence            87777889999998 555443 2111   11234789999999997776666789999998 665433211   335567


Q ss_pred             eeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccCc
Q 016458          346 ITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPW  384 (389)
Q Consensus       346 v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~~  384 (389)
                      +.+++++++|.++++...++.|..    |+. ++++..+
T Consensus       227 ~~~i~~~~~g~l~v~~~~~~~i~~----~d~-~g~~~~~  260 (299)
T 2z2n_A          227 PHAITAGAGIDLWFTEWGANKIGR----LTS-NNIIEEY  260 (299)
T ss_dssp             EEEEEECSTTCEEEEETTTTEEEE----EET-TTEEEEE
T ss_pred             ceeEEECCCCCEEEeccCCceEEE----ECC-CCceEEE
Confidence            899999999987776667788988    887 4555443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.74  E-value=1.3e-15  Score=143.19  Aligned_cols=280  Identities=12%  Similarity=0.006  Sum_probs=174.7

Q ss_pred             CCCCeEEEEecCCc---EEEEeC--C---CCCeeEEEe------eCCCcEEEEEECCCCcEEEEecCC-----CcEEEEe
Q 016458           77 SERNRIVSASQDGR---LIVWNA--L---TSQKTHAIK------LPCAWVMTCAFSPTGQSVACGGLD-----SVCSIFN  137 (389)
Q Consensus        77 ~~~~~l~~~~~dg~---v~iw~~--~---~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vw~  137 (389)
                      |+|++++....++.   -.+|..  .   .++....+.      .+...+..++|||||++|+.+..+     ..|++||
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            67777665554332   444543  3   333222211      122367889999999999877543     4699999


Q ss_pred             CCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC--------------eEEEEeCCCCee--EEEecCcc
Q 016458          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--------------TCVLWDITTGLR--TSVFGGEF  201 (389)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~--~~~~~~~~  201 (389)
                      +.++.       ... ...+...+..++|+|+ .. |+.++.++              .|++|++.++..  ...+..  
T Consensus       196 l~tg~-------~~~-~~~~~~~~~~~~wspD-~~-l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~--  263 (741)
T 1yr2_A          196 VADGK-------PLA-DELKWVKFSGLAWLGN-DA-LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT--  263 (741)
T ss_dssp             TTTCC-------EEE-EEEEEEESCCCEESTT-SE-EEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC--
T ss_pred             CCCCC-------CCC-ccCCCceeccEEEECC-CE-EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc--
Confidence            98855       111 1112222357899998 55 44444433              489999987652  222211  


Q ss_pred             cCCCCCCeeEEEeeCCCCcEEEEeeCC-----CceEEEeCCCCCcc-eeEEeeeccceEEEEEecCCCEEEEEec----C
Q 016458          202 QSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGNRFGTGSD----D  271 (389)
Q Consensus       202 ~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d  271 (389)
                       ..+...+..+.|+| ++++|+..+.+     ..|++||+.++... ...+..+...+.... +|+++.|+..+.    +
T Consensus       264 -~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~  340 (741)
T 1yr2_A          264 -PELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPL  340 (741)
T ss_dssp             -TTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTT
T ss_pred             -CCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCC
Confidence             22334588999999 77777666644     38999998765223 556665555555553 488998888775    3


Q ss_pred             CeEEEEECCCCc-eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc-cceEEEeecCcCCCCCCCeeEE
Q 016458          272 GTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITCL  349 (389)
Q Consensus       272 g~i~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~  349 (389)
                      +.|.+||+.++. ....+.....    ..+..+.++ ++.++++...|+..+||.+. .+.....+.   ..+.+.+..+
T Consensus       341 ~~l~~~d~~~~~~~~~~l~~~~~----~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~---~~~~~~v~~~  412 (741)
T 1yr2_A          341 KKIVRVDLSGSTPRFDTVVPESK----DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVS---LPGIGSASGL  412 (741)
T ss_dssp             CEEEEEECSSSSCEEEEEECCCS----SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECB---CSSSCEEEEE
T ss_pred             CEEEEEeCCCCccccEEEecCCC----CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeecc---CCCCeEEEEe
Confidence            459999998752 3333332221    136677777 56677888888887777554 455555552   2246678999


Q ss_pred             EECCCCCeEEe----eeCCCeeEEeecceecccCcccC
Q 016458          350 GLSADGSALCT----GSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       350 ~~~~~~~~l~~----~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      +++|+++.|+.    ....+.+.+    ||+.+|+...
T Consensus       413 ~~s~d~~~l~~~~ss~~~P~~i~~----~d~~tg~~~~  446 (741)
T 1yr2_A          413 SGRPGDRHAYLSFSSFTQPATVLA----LDPATAKTTP  446 (741)
T ss_dssp             ECCBTCSCEEEEEEETTEEEEEEE----EETTTTEEEE
T ss_pred             ecCCCCCEEEEEEcCCCCCCEEEE----EECCCCcEEE
Confidence            99999886663    334578888    9998887543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.74  E-value=6.5e-15  Score=126.61  Aligned_cols=264  Identities=15%  Similarity=0.136  Sum_probs=181.9

Q ss_pred             ccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEe----------cCCcEEEEeCCCCCeeEEEeeC-------CCcEE
Q 016458           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLP-------CAWVM  113 (389)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~-------~~~v~  113 (389)
                      .+++...+.+.++..-..+  .++++||+++|+++.          .++.|.++|..+++.+..+...       .....
T Consensus       103 VID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~  180 (426)
T 3c75_H          103 VIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQW  180 (426)
T ss_dssp             EEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG
T ss_pred             EEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcc
Confidence            3455666666666655555  899999999888776          3678999999999999888754       22356


Q ss_pred             EEEECCCCcEEEEecC--CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC
Q 016458          114 TCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG  191 (389)
Q Consensus       114 ~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  191 (389)
                      .++|+|+|++++++..  ++.|.+.|+.+.+       ....+.-..    +....|++...+++.+.||.+.+.+..++
T Consensus       181 ~~~~spDGk~lyV~n~~~~~~VsVID~~t~k-------vv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~  249 (426)
T 3c75_H          181 MNALTPDNKNLLFYQFSPAPAVGVVDLEGKT-------FDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADG  249 (426)
T ss_dssp             GSEECTTSSEEEEEECSSSCEEEEEETTTTE-------EEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTT
T ss_pred             eEEEcCCCCEEEEEecCCCCeEEEEECCCCe-------EEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCC
Confidence            7899999999998864  5789999998754       333333211    13445655567788888999999898666


Q ss_pred             eeEEEecCcccCCCCCC-eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc-eeEEe----------eeccceEEEEEe
Q 016458          192 LRTSVFGGEFQSGHTAD-VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFH----------GHEGDVNTVKFF  259 (389)
Q Consensus       192 ~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~----------~~~~~i~~~~~~  259 (389)
                      +........+ .....+ ...+.+.+ ++..++..+..+.+.+.|....... ...+.          ........++++
T Consensus       250 ~v~~~~~~~~-~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s  327 (426)
T 3c75_H          250 ETKVTNTEVF-HTEDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYH  327 (426)
T ss_dssp             CCEEEECCCC-SCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEE
T ss_pred             cEEEEeeeee-ccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEc
Confidence            5553211000 111111 12345677 4444444566789999998643211 11111          011122347899


Q ss_pred             cCCCEEEEEec----------CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEe-cCCcEEEEEcc
Q 016458          260 PDGNRFGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVWDTL  327 (389)
Q Consensus       260 ~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~i~d~~  327 (389)
                      |+++.+++...          ++.|.++|+.+.+.+..+.....      ...++|+|||+ ++++.. .++.|.++|+.
T Consensus       328 ~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~------P~gia~spDg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          328 RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE------IDSINVSQDAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE------ECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCC------cCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence            99988777643          35799999999999988866442      68999999999 888888 58999999999


Q ss_pred             cceEEEee
Q 016458          328 LAKVVLNL  335 (389)
Q Consensus       328 ~~~~~~~~  335 (389)
                      +++.+.++
T Consensus       402 t~kvv~tI  409 (426)
T 3c75_H          402 TGEELRSV  409 (426)
T ss_dssp             TCCEEEEE
T ss_pred             CCCEEEEe
Confidence            99999886

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.74  E-value=2.2e-14  Score=120.59  Aligned_cols=248  Identities=9%  Similarity=0.070  Sum_probs=165.7

Q ss_pred             CCCcEEEEEECCCCcEEEE-------ecCCCcEEEEeCCCCCCCCCCCcceeee----cccccceEEEEEeeC-CCcEEE
Q 016458          108 PCAWVMTCAFSPTGQSVAC-------GGLDSVCSIFNLNSPTDKDGNLPVSRML----SGHKGYVSCCQYVPD-EDTHLI  175 (389)
Q Consensus       108 ~~~~v~~~~~~~~~~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~-~~~~l~  175 (389)
                      .-....+++|++++.++++       +..++.|.+|+..++.       .....    .++...+.++.+.++ + .++ 
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~~~~~~~i~~~~~~g-~l~-   86 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK-------KTVICKPEVNGYGGIPAGCQCDRDAN-QLF-   86 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC-------EEEEECCEETTEECCEEEEEECSSSS-EEE-
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc-------EEEEEecccCCCCCCCceEEEecCCC-cEE-
Confidence            3345789999999988877       5678899999976643       11111    124567889999998 5 444 


Q ss_pred             EeeCCCeEEEEeCCCCeeEEE-ecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC---------------CceEEEeCCCC
Q 016458          176 TSSGDQTCVLWDITTGLRTSV-FGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---------------STARLWDTRVA  239 (389)
Q Consensus       176 ~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~  239 (389)
                      .++..+.|.+||.. ++.... ... ........+.++++++ +++++++...+               +.|..||.. .
T Consensus        87 v~~~~~~l~~~d~~-g~~~~~~~~~-~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g  162 (314)
T 1pjx_A           87 VADMRLGLLVVQTD-GTFEEIAKKD-SEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G  162 (314)
T ss_dssp             EEETTTEEEEEETT-SCEEECCSBC-TTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred             EEECCCCEEEEeCC-CCEEEEEecc-CCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence            44445579999988 655433 211 0011224588999998 67777766554               567777765 2


Q ss_pred             CcceeEEeeeccceEEEEEe----cCCCEEEEE-ecCCeEEEEECC-CCceee--EeeccCCCCCC-CCeeEEEeCCCCC
Q 016458          240 SRAVRTFHGHEGDVNTVKFF----PDGNRFGTG-SDDGTCRLFDIR-TGHQLQ--VYYQQHGENEI-PHVTSIAFSISGR  310 (389)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~~~--~~~~~~~~~~~-~~i~~~~~~~~~~  310 (389)
                       .. ..+..+......++++    |+++.|+++ ..++.|.+||+. ++....  .+...  .... ..+..++++++|+
T Consensus       163 -~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~p~~i~~d~~G~  238 (314)
T 1pjx_A          163 -QM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI--PGTHEGGADGMDFDEDNN  238 (314)
T ss_dssp             -CE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC--CCCSSCEEEEEEEBTTCC
T ss_pred             -CE-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC--CCCCCCCCCceEECCCCC
Confidence             32 3333344567889999    999766555 567899999986 343211  11111  1111 2478899999999


Q ss_pred             EEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeE-EeeeCCCeeEEeecceecccCc
Q 016458          311 LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL-CTGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       311 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~~~~W~~~~~~  380 (389)
                      ++++...++.|.+||..+++....+    ..+...+.+++|+++++.| ++...++.|..    |++...-
T Consensus       239 l~v~~~~~~~i~~~d~~~g~~~~~~----~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~----~~~~~~g  301 (314)
T 1pjx_A          239 LLVANWGSSHIEVFGPDGGQPKMRI----RCPFEKPSNLHFKPQTKTIFVTEHENNAVWK----FEWQRNG  301 (314)
T ss_dssp             EEEEEETTTEEEEECTTCBSCSEEE----ECSSSCEEEEEECTTSSEEEEEETTTTEEEE----EECSSCB
T ss_pred             EEEEEcCCCEEEEEcCCCCcEeEEE----eCCCCCceeEEECCCCCEEEEEeCCCCeEEE----EeCCCCC
Confidence            8888778889999998867666555    3455789999999999955 44555678888    8887543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.73  E-value=2.4e-15  Score=129.30  Aligned_cols=278  Identities=11%  Similarity=0.016  Sum_probs=190.2

Q ss_pred             CCCCeEEEEec-C----CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec----------CCCcEEEEeCCCC
Q 016458           77 SERNRIVSASQ-D----GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNLNSP  141 (389)
Q Consensus        77 ~~~~~l~~~~~-d----g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~  141 (389)
                      ++++.++++.. +    +.|.++|..+++.+..+.....+  .++++|++++++++.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            35555555443 2    69999999999999999987776  899999999998876          3678999999875


Q ss_pred             CCCCCCCcceeeeccc-------ccceEEEEEeeCCCcEEEEee-C-CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458          142 TDKDGNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLITSS-G-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (389)
Q Consensus       142 ~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  212 (389)
                      +       ....+.-.       ......+.++|++ ++++.+. . ++.|.+.|+.+++.+..+..     ..  .  .
T Consensus       160 ~-------vv~~I~v~g~~r~~~g~~P~~~~~spDG-k~lyV~n~~~~~~VsVID~~t~kvv~~I~v-----~g--~--~  222 (426)
T 3c75_H          160 L-------PIADIELPDAPRFLVGTYQWMNALTPDN-KNLLFYQFSPAPAVGVVDLEGKTFDRMLDV-----PD--C--Y  222 (426)
T ss_dssp             C-------EEEEEEETTCCCCCBSCCGGGSEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEEC-----CS--E--E
T ss_pred             c-------EEEEEECCCccccccCCCcceEEEcCCC-CEEEEEecCCCCeEEEEECCCCeEEEEEEc-----CC--c--e
Confidence            4       33333210       1234567899998 4566554 3 68999999999999888732     11  1  2


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE----eeeccce-EEEEEecCCCEEEEEecCCeEEEEECCCCceee-
Q 016458          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF----HGHEGDV-NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ-  286 (389)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-  286 (389)
                      ...|.....+++.+.||.+.+.+.... +.....    .....++ ..+.|.+++..++..+..+.|.+.|+....... 
T Consensus       223 ~~~p~g~~~~v~~~~dG~~~~V~~~~~-~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~  301 (426)
T 3c75_H          223 HIFPASPTVFYMNCRDGSLARVDFADG-ETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFR  301 (426)
T ss_dssp             EEEEEETTEEEEEETTSSEEEEECCTT-CCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEEC
T ss_pred             eeccCCCcEEEEEcCCCCEEEEECCCC-cEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEe
Confidence            334434466777778888888888433 333211    1111111 235678888888877888999999987544221 


Q ss_pred             -Eeecc--CCC---CCCCCeeEEEeCCCCCEEEEEec----------CCcEEEEEcccceEEEeecCcCCCCCCCeeEEE
Q 016458          287 -VYYQQ--HGE---NEIPHVTSIAFSISGRLLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  350 (389)
Q Consensus       287 -~~~~~--~~~---~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  350 (389)
                       .+...  ...   ........++++|+++.+++...          ++.|.++|+.+.+.+..+..     .....+++
T Consensus       302 ~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-----g~~P~gia  376 (426)
T 3c75_H          302 APIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-----GHEIDSIN  376 (426)
T ss_dssp             CCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-----EEEECEEE
T ss_pred             eeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-----CCCcCeEE
Confidence             11100  000   00011233789999998877653          34799999999999988841     23588999


Q ss_pred             ECCCCC-eEEeee-CCCeeEEeecceecccCcccC
Q 016458          351 LSADGS-ALCTGS-WDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       351 ~~~~~~-~l~~~~-~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      |+|||+ +++++. .++.|.+    +|+.+++...
T Consensus       377 ~spDg~~~lyv~n~~s~~VsV----ID~~t~kvv~  407 (426)
T 3c75_H          377 VSQDAEPLLYALSAGTQTLHI----YDAATGEELR  407 (426)
T ss_dssp             ECCSSSCEEEEEETTTTEEEE----EETTTCCEEE
T ss_pred             EccCCCEEEEEEcCCCCeEEE----EECCCCCEEE
Confidence            999999 888888 5899999    9999998754

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.73  E-value=3.4e-14  Score=123.39  Aligned_cols=248  Identities=15%  Similarity=0.040  Sum_probs=167.6

Q ss_pred             CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCC--cEEEEeCCCCCCCC
Q 016458           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS--VCSIFNLNSPTDKD  145 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~  145 (389)
                      .....|+|+++++++++...++.|++||..++......... .... ++|+++++.|+++..++  .|.+++......  
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~--  206 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA--  206 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC--
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce--
Confidence            46889999999988888777899999999877665554443 3334 99999999998888766  788888765320  


Q ss_pred             CCCcceeee-cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCe-e-EEEeeCCCCcEE
Q 016458          146 GNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV-L-SVSISGSNSRMF  222 (389)
Q Consensus       146 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v-~-~~~~~~~~~~~l  222 (389)
                        ....... ......+.+++++|++.. |+.+..++.|+.||..++.......... ......- . .++++|.++.++
T Consensus       207 --~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~~-~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          207 --PTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLIKQLEL-SGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             --EEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEEEECCC-CSCCCCSSCCEEEEETTTTEEE
T ss_pred             --eEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEEecccc-cCCCCCCccccEEEeCCCCEEE
Confidence              0011111 214456788999995434 4446778999999998776433210000 1122222 3 999999667777


Q ss_pred             EEeeCCCceEEEeCCCCCcceeEEeeec---------------cceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceee
Q 016458          223 VSGSCDSTARLWDTRVASRAVRTFHGHE---------------GDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQ  286 (389)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~  286 (389)
                      ++-..++.|+.|+....   ...+.++.               .....++++|+|+++++-. .++.|+.|++.++....
T Consensus       283 v~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~  359 (409)
T 3hrp_A          283 MSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST  359 (409)
T ss_dssp             EEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE
T ss_pred             EEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE
Confidence            77777889999987632   33333332               3478999999999878877 88999999987775433


Q ss_pred             EeeccCC---------CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458          287 VYYQQHG---------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       287 ~~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (389)
                      .......         .........++++++|.++++-..++.|+.+++
T Consensus       360 ~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          360 VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            2221000         011234789999999887777777888888765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.73  E-value=9.3e-15  Score=122.91  Aligned_cols=240  Identities=11%  Similarity=0.094  Sum_probs=162.0

Q ss_pred             ccCcEEEEEEcCCCCeEEE-------EecCCcEEEEeCCCCCeeEEEe----eCCCcEEEEEECCC-CcEEEEecCCCcE
Q 016458           66 HAGKVYSLDWTSERNRIVS-------ASQDGRLIVWNALTSQKTHAIK----LPCAWVMTCAFSPT-GQSVACGGLDSVC  133 (389)
Q Consensus        66 h~~~v~~~~~~~~~~~l~~-------~~~dg~v~iw~~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~dg~i  133 (389)
                      .-....+++|++++.++++       +..++.|.+||..+++......    .+...+..++++++ ++++++.. .+.|
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l   94 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL   94 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence            3445789999999988887       6778899999988877543221    13356899999999 76555554 4478


Q ss_pred             EEEeCCCCCCCCCCCcceee-ec----ccccceEEEEEeeCCCcEEEEeeCC---------------CeEEEEeCCCCee
Q 016458          134 SIFNLNSPTDKDGNLPVSRM-LS----GHKGYVSCCQYVPDEDTHLITSSGD---------------QTCVLWDITTGLR  193 (389)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~-~~----~~~~~v~~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~  193 (389)
                      .+|+.. +.       .... ..    .....+.++++.+++ +++++...+               +.|..||.. ++.
T Consensus        95 ~~~d~~-g~-------~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~  164 (314)
T 1pjx_A           95 LVVQTD-GT-------FEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM  164 (314)
T ss_dssp             EEEETT-SC-------EEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred             EEEeCC-CC-------EEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence            889987 33       1111 11    122457899999987 566655544               578888876 444


Q ss_pred             EEEecCcccCCCCCCeeEEEee----CCCCc-EEEEeeCCCceEEEeCCCCCc-----ceeEEeeec-cceEEEEEecCC
Q 016458          194 TSVFGGEFQSGHTADVLSVSIS----GSNSR-MFVSGSCDSTARLWDTRVASR-----AVRTFHGHE-GDVNTVKFFPDG  262 (389)
Q Consensus       194 ~~~~~~~~~~~~~~~v~~~~~~----~~~~~-~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~-~~i~~~~~~~~~  262 (389)
                      ....      ........++++    | +++ ++++...++.|.+||......     ....+..+. ..+..++++++|
T Consensus       165 ~~~~------~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G  237 (314)
T 1pjx_A          165 IQVD------TAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN  237 (314)
T ss_dssp             EEEE------EEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred             EEec------cCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC
Confidence            3332      223346788999    8 554 445555678999999762112     112222232 557889999999


Q ss_pred             CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE-ecCCcEEEEEccc
Q 016458          263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDTLL  328 (389)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~  328 (389)
                      +++++...++.|.+||..+++....+....     ..+.+++|+|+|+.|+++ ..++.|..|++..
T Consensus       238 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~-----~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          238 NLLVANWGSSHIEVFGPDGGQPKMRIRCPF-----EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CEEEEEETTTEEEEECTTCBSCSEEEECSS-----SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CEEEEEcCCCEEEEEcCCCCcEeEEEeCCC-----CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            988888788999999988776665554322     248999999999966555 4567899999764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.70  E-value=4.1e-15  Score=139.76  Aligned_cols=248  Identities=10%  Similarity=0.045  Sum_probs=157.3

Q ss_pred             ccCcEEEEEEcCCCCeEEEEecC-----CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCc--------
Q 016458           66 HAGKVYSLDWTSERNRIVSASQD-----GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV--------  132 (389)
Q Consensus        66 h~~~v~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------  132 (389)
                      |...+..++|||||++||.++.+     ..|++||+.+++.+.. ..+...+..++|+|+ +.|+.++.++.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            43468899999999999877654     3699999999987653 222222357899999 98888876554        


Q ss_pred             ------EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC-----CeEEEEeCCCC--eeEEEecC
Q 016458          133 ------CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDITTG--LRTSVFGG  199 (389)
Q Consensus       133 ------i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~--~~~~~~~~  199 (389)
                            |++|++.++...   -........+...+..+.|+|+|. +++..+.+     ..|.+||+.++  .....+  
T Consensus       239 ~~~~~~v~~~~lgt~~~~---~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l--  312 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSA---DQPVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGKIGPVTAL--  312 (741)
T ss_dssp             CCCCCEEEEEETTSCGGG---CEEEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTEECCCEEE--
T ss_pred             CCCCCEEEEEECCCCchh---CEEEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCCCcccEEe--
Confidence                  888998764311   011222223334588999999984 55555433     48999999877  312333  


Q ss_pred             cccCCCCCCeeEEEeeCCCCcEEEEeeC----CCceEEEeCCCCC-cceeEEeeeccceEEEEEecCCCEEEEEecCCeE
Q 016458          200 EFQSGHTADVLSVSISGSNSRMFVSGSC----DSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC  274 (389)
Q Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  274 (389)
                         ..+...+.... +| +++.|+..+.    ++.|.+||+..+. .....+..+...+..++++ ++.++++...|+..
T Consensus       313 ---~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~  386 (741)
T 1yr2_A          313 ---IPDLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKS  386 (741)
T ss_dssp             ---ECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEE
T ss_pred             ---cCCCCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence               22333344443 46 5555655554    3459999987641 2333344444556677887 66678888889887


Q ss_pred             EEEECC-CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe----cCCcEEEEEcccceE
Q 016458          275 RLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY----SNGDCYVWDTLLAKV  331 (389)
Q Consensus       275 ~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~  331 (389)
                      ++|.+. ++.....+...    ....+..+.++|+++.++...    ..+.|++||+.+++.
T Consensus       387 ~l~~~~~~g~~~~~l~~~----~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          387 QVLAFDLDGKPAGAVSLP----GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEEEEETTSCEEEECBCS----SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEEEEeCCCCceeeccCC----CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            777554 34444443321    122478899999988665332    346899999988763

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.68  E-value=4.8e-13  Score=111.36  Aligned_cols=235  Identities=12%  Similarity=0.100  Sum_probs=154.7

Q ss_pred             CCCcEEEEEECCC-CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEE
Q 016458          108 PCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW  186 (389)
Q Consensus       108 ~~~~v~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  186 (389)
                      ...-..+..|+++ +.++++...++.|..|+..++.       . ..+ .....+.++++++++ ++++ +. ++.|.+|
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~-------~-~~~-~~~~~~~~i~~~~dG-~l~v-~~-~~~l~~~   78 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ-------V-QRV-TMDAPVSSVALRQSG-GYVA-TI-GTKFCAL   78 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-------E-EEE-ECSSCEEEEEEBTTS-SEEE-EE-TTEEEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc-------E-EEE-eCCCceEEEEECCCC-CEEE-EE-CCeEEEE
Confidence            3345667889995 4566666778999999988643       1 112 234678999999998 4444 44 5689999


Q ss_pred             eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC---------CceEEEeCCCCCcceeEEeeeccceEEEE
Q 016458          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---------STARLWDTRVASRAVRTFHGHEGDVNTVK  257 (389)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~i~~~~  257 (389)
                      |..+++........ .......+..++++| +++++++....         ..-.+|.+..... ...+..+....+.++
T Consensus        79 d~~~g~~~~~~~~~-~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~  155 (297)
T 3g4e_A           79 NWKEQSAVVLATVD-NDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLD  155 (297)
T ss_dssp             ETTTTEEEEEEECC-TTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEE
T ss_pred             ECCCCcEEEEEecC-CCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceE
Confidence            99887654433211 011234578899998 77766654322         2234554443222 333344445678999


Q ss_pred             EecCCCEEE-EEecCCeEEEEEC--CCCcee--eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE
Q 016458          258 FFPDGNRFG-TGSDDGTCRLFDI--RTGHQL--QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  332 (389)
Q Consensus       258 ~~~~~~~l~-~~~~dg~i~i~d~--~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  332 (389)
                      |+|+++.|+ +.+.++.|.+||+  .++...  ..+...  .........++++++|++.++...++.|..||..+++.+
T Consensus       156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~--~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~  233 (297)
T 3g4e_A          156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL--EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL  233 (297)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC--CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred             EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC--CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence            999998765 4556789999997  455432  112111  111124688999999988877777888999999989988


Q ss_pred             EeecCcCCCCCCCeeEEEEC-CCCCeEEeeeC
Q 016458          333 LNLGSLQNSHEGRITCLGLS-ADGSALCTGSW  363 (389)
Q Consensus       333 ~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~  363 (389)
                      ..+    ..+...+++++|. |+++.|+.++.
T Consensus       234 ~~i----~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          234 QTV----KLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEE----ECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEE----ECCCCCceEEEEeCCCCCEEEEEcC
Confidence            887    4555689999998 88877655543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.67  E-value=7.6e-13  Score=110.33  Aligned_cols=244  Identities=9%  Similarity=-0.006  Sum_probs=169.8

Q ss_pred             CCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCccee-eecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458          109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR-MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (389)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  187 (389)
                      ...+.++++.++++..++...++.|.+|+.. +.       ... ........+..+++.+++ .++++...++.|..||
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d   89 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR-------IKEFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLS   89 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-------EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEEC
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc-------eEEEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEEC
Confidence            4568999999999988887778999999977 32       111 122334578899999887 5666666678999999


Q ss_pred             CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCccee-EEeeeccceEEEEEecCCCEEE
Q 016458          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFPDGNRFG  266 (389)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~  266 (389)
                      .. +.... +..   ......+..+++.+ +++++++...++.|..+|.. + .... .+......+..+++.+++++.+
T Consensus        90 ~~-g~~~~-~~~---~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g-~~~~~~~~~~~~~~~~i~~d~~g~l~v  161 (300)
T 2qc5_A           90 KK-GGFTE-YPL---PQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-G-TIYEYDLPNKGSYPAFITLGSDNALWF  161 (300)
T ss_dssp             TT-SCEEE-EEC---SSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-S-CEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred             CC-CCeEE-ecC---CCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-C-CEEEccCCCCCCCceeEEECCCCCEEE
Confidence            88 54432 211   22346688999998 77777777668899999987 3 3222 1222345688999999999777


Q ss_pred             EEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCe
Q 016458          267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI  346 (389)
Q Consensus       267 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  346 (389)
                      +...++.|..||. +++... +..   ......+..++++++|++.++....+.|.+||. +++......   ..+...+
T Consensus       162 ~~~~~~~i~~~~~-~g~~~~-~~~---~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~---~~~~~~~  232 (300)
T 2qc5_A          162 TENQNNSIGRITN-TGKLEE-YPL---PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDI---PTPNARP  232 (300)
T ss_dssp             EETTTTEEEEECT-TCCEEE-EEC---SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC---SSTTCCE
T ss_pred             EecCCCeEEEECC-CCcEEE-eeC---CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEEC---CCCCCCc
Confidence            7666889999998 554433 222   112234789999999987777666778999998 444433211   3345678


Q ss_pred             eEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          347 TCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       347 ~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      .+++++++|++.++...++.|..    ++. ++++..
T Consensus       233 ~~i~~d~~g~l~v~~~~~~~i~~----~~~-~g~~~~  264 (300)
T 2qc5_A          233 HAITAGKNSEIWFTEWGANQIGR----ITN-DNTIQE  264 (300)
T ss_dssp             EEEEECSTTCEEEEETTTTEEEE----ECT-TSCEEE
T ss_pred             eEEEECCCCCEEEeccCCCeEEE----ECC-CCcEEE
Confidence            99999999987777666788988    887 455443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.66  E-value=3.3e-14  Score=120.96  Aligned_cols=275  Identities=11%  Similarity=0.007  Sum_probs=172.6

Q ss_pred             ceeeeecccccCcEEEEEEcCCCCeEEEEe--cCCcEEEEeCCCCCeeEEEe-------eCCCcEEEEEECCCCcEEEEe
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSAS--QDGRLIVWNALTSQKTHAIK-------LPCAWVMTCAFSPTGQSVACG  127 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~  127 (389)
                      ++.+..+.   ..+..++++++|+.+++..  .++.++||.+.+++ +..+.       .+-..+..++++++++++++-
T Consensus         9 ~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D   84 (343)
T 2qe8_A            9 LEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLD   84 (343)
T ss_dssp             CEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEE
T ss_pred             eEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEc
Confidence            34444444   6799999999999888864  23435566554443 22221       133579999999998876654


Q ss_pred             cC-----CCcEEEEeCCCCCCCCCCCcceeeec------ccccceEEEEEeeCCCcEEEEee---CCCeEEEEeCCCCee
Q 016458          128 GL-----DSVCSIFNLNSPTDKDGNLPVSRMLS------GHKGYVSCCQYVPDEDTHLITSS---GDQTCVLWDITTGLR  193 (389)
Q Consensus       128 ~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~  193 (389)
                      ..     ++.|.+||+.+++       ....+.      .+...+..+++.+++...+++..   .++.|.+||+.+++.
T Consensus        85 ~g~~~~~~~~i~~~d~~tg~-------~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~  157 (343)
T 2qe8_A           85 NGNQSKSVPKLVAWDTLNNQ-------LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA  157 (343)
T ss_dssp             CHHHHTSCCEEEEEETTTTE-------EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred             CCCCcCCCCeEEEEECCCCe-------EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence            33     5789999998644       222222      12345688999986545556655   678999999998877


Q ss_pred             EEEecCcccCCCCCCee-EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCC
Q 016458          194 TSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  272 (389)
Q Consensus       194 ~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  272 (389)
                      ...+     ..|..... ...+.+ ++..+.+...+|.+..|.               ..+..++|+|+++.|+++..++
T Consensus       158 ~r~~-----~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~  216 (343)
T 2qe8_A          158 ARVL-----QGYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHS  216 (343)
T ss_dssp             EEEC-----TTCTTTSCCSCCCEE-TTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSC
T ss_pred             EEEe-----cCCCcccccccceeE-CCEEEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCC
Confidence            6655     22211100 022333 455566666677665442               1357899999999888887665


Q ss_pred             -eEEEEECC---CCce-----eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCC
Q 016458          273 -TCRLFDIR---TGHQ-----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE  343 (389)
Q Consensus       273 -~i~i~d~~---~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  343 (389)
                       .+..++..   .+..     ...+...   ........++++++|+++++...++.|.+||..+++......   ..+.
T Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~---g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~---~~~~  290 (343)
T 2qe8_A          217 TSMYRIKSADLSNLQLTDAELGSKIERY---SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT---DEKL  290 (343)
T ss_dssp             SEEEEEEHHHHTCTTCCHHHHHTTCEEE---EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE---CGGG
T ss_pred             CeEEEEEHHHhcCCCCChhhhhcceEec---ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE---CCce
Confidence             55555432   1110     0000000   001125679999999998888889999999985565433331   1234


Q ss_pred             CCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          344 GRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       344 ~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      ..+++++|.+++.++++.+..+.+.+
T Consensus       291 ~~p~~va~~~~g~l~v~~~~~~~~~~  316 (343)
T 2qe8_A          291 SWTDSFNFGSDGYLYFDCNQLHHSAP  316 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECCGGGSGG
T ss_pred             ecCCeeEECCCCcEEEEeCccccccc
Confidence            56899999999998888776655544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.66  E-value=2.5e-14  Score=133.25  Aligned_cols=249  Identities=10%  Similarity=0.064  Sum_probs=161.8

Q ss_pred             cccCcEEEEEEcCCCCeEEEE-----ecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCC--------
Q 016458           65 GHAGKVYSLDWTSERNRIVSA-----SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS--------  131 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~~~-----~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------  131 (389)
                      +|...+..++|||||++||-+     +....|++||+.+++.+... .+......++|+ |++.|+.++.+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            466679999999999988843     23357999999999865431 111112567899 999998887764        


Q ss_pred             -----cEEEEeCCCCCCCCCCCcceeeecc-cccceEEEEEeeCCCcEEEEeeC---CCeEEEEeCCCCe-eEEEecCcc
Q 016458          132 -----VCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSG---DQTCVLWDITTGL-RTSVFGGEF  201 (389)
Q Consensus       132 -----~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~~~~~~~~  201 (389)
                           .|++|++.++...   -........ |......+.|+|++..++++.+.   +..|+++|+.++. ....+    
T Consensus       204 ~~~~~~v~~~~lgt~~~~---~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l----  276 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQED---DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV----  276 (693)
T ss_dssp             -CCCCEEEEEETTSCGGG---CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE----
T ss_pred             cCCCcEEEEEECCCCccc---ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE----
Confidence                 3999998774411   011222233 44557789999998655555443   3589999998763 22333    


Q ss_pred             cCCCCCCeeEEEeeCCCCcEEEEeeCC---CceEEEeCCCCCc-ceeEEeeeccceEEEEEecCCCEEEEEecCC---eE
Q 016458          202 QSGHTADVLSVSISGSNSRMFVSGSCD---STARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---TC  274 (389)
Q Consensus       202 ~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i  274 (389)
                       ..+....... +++.++.+++.+..+   +.|..+|+..+.. ....+..|...+.  .|+++++.|+....++   .|
T Consensus       277 -~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l  352 (693)
T 3iuj_A          277 -QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARV  352 (693)
T ss_dssp             -ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred             -eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence             2333444444 555356666665544   5789999987532 2355666766665  8999998887776544   68


Q ss_pred             EEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC----CcEEEEEcccceE
Q 016458          275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN----GDCYVWDTLLAKV  331 (389)
Q Consensus       275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~  331 (389)
                      ++||+..+ ....+....    ...+..+.++++++.++....+    +.++.||+.+++.
T Consensus       353 ~~~d~~g~-~~~~l~~p~----~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          353 EQFDYEGK-RVREVALPG----LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEECTTSC-EEEEECCSS----SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EEEECCCC-eeEEeecCC----CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            99998744 333332211    1236777888888876665544    7899999877654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.66  E-value=3.2e-13  Score=112.39  Aligned_cols=233  Identities=13%  Similarity=0.086  Sum_probs=153.1

Q ss_pred             cccccCcEEEEEEcCCC-CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCC
Q 016458           63 LQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP  141 (389)
Q Consensus        63 l~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  141 (389)
                      +..+..-.-+..|++++ .++++...++.|..||..++.. ..+. ....+.+++++++++++++.  ++.|.+||..++
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g   83 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQ   83 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTT
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCC
Confidence            34444456689999954 4566666789999999987765 3333 34679999999999955553  567999998764


Q ss_pred             CCCCCCCcceeeec--ccccceEEEEEeeCCCcEEEEeeC-----------CCeEEEEeCCCCeeEEEecCcccCCCCCC
Q 016458          142 TDKDGNLPVSRMLS--GHKGYVSCCQYVPDEDTHLITSSG-----------DQTCVLWDITTGLRTSVFGGEFQSGHTAD  208 (389)
Q Consensus       142 ~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  208 (389)
                      .     ........  .....+.++++.|+| +++++...           .+.|..++.. +......      .....
T Consensus        84 ~-----~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~------~~~~~  150 (297)
T 3g4e_A           84 S-----AVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYF------DQVDI  150 (297)
T ss_dssp             E-----EEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEE------EEESB
T ss_pred             c-----EEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECC-CCEEEEe------ecccc
Confidence            3     11111111  123457889999998 45544321           2345555543 3322222      22345


Q ss_pred             eeEEEeeCCCCcEEEEeeCCCceEEEeCC--CCCcc-----eeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCC
Q 016458          209 VLSVSISGSNSRMFVSGSCDSTARLWDTR--VASRA-----VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT  281 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  281 (389)
                      ...++|+|+...++++.+.++.|..||+.  ++ ..     +..+..+...+..++++++|++.++...++.|..||..+
T Consensus       151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G-~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t  229 (297)
T 3g4e_A          151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTG-QISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT  229 (297)
T ss_dssp             EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTC-CEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT
T ss_pred             ccceEEcCCCCEEEEecCCCCcEEEEeccCCCC-cccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC
Confidence            67899999444455666678899999874  32 21     112222345678999999998888877888999999998


Q ss_pred             CceeeEeeccCCCCCCCCeeEEEeC-CCCCEEEEEecC
Q 016458          282 GHQLQVYYQQHGENEIPHVTSIAFS-ISGRLLFAGYSN  318 (389)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d  318 (389)
                      ++.+..+.....     .+++++|. |+++.|++++..
T Consensus       230 G~~~~~i~~p~~-----~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          230 GKRLQTVKLPVD-----KTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             CCEEEEEECSSS-----BEEEEEEESGGGCEEEEEEBC
T ss_pred             ceEEEEEECCCC-----CceEEEEeCCCCCEEEEEcCC
Confidence            888877765432     38999998 888877776543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.65  E-value=2.7e-13  Score=113.36  Aligned_cols=244  Identities=9%  Similarity=0.062  Sum_probs=158.8

Q ss_pred             CeeEEEeeCCCcEEEEEECCCCc-EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee
Q 016458          100 QKTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS  178 (389)
Q Consensus       100 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  178 (389)
                      ..+..+...........|+|+++ ++++...++.|..|+... .        ...+..+...+..+.+.+++ +++++..
T Consensus        35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~--------~~~~~~~~~~~~gl~~d~dG-~l~v~~~  104 (305)
T 3dr2_A           35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T--------VDVLLDATAFTNGNAVDAQQ-RLVHCEH  104 (305)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C--------EEEEEESCSCEEEEEECTTS-CEEEEET
T ss_pred             CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C--------EEEEeCCCCccceeeECCCC-CEEEEEC
Confidence            34444555556678899999998 566777789999998743 1        23344456678899999987 5555555


Q ss_pred             CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEE----eeC-------------CCceEEEeCCCCCc
Q 016458          179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS----GSC-------------DSTARLWDTRVASR  241 (389)
Q Consensus       179 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~  241 (389)
                      .++.|.+|+.. +...... ..........+..+++.+ +++++++    |..             .+.|..||..++ +
T Consensus       105 ~~~~v~~~~~~-g~~~~~~-~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-~  180 (305)
T 3dr2_A          105 GRRAITRSDAD-GQAHLLV-GRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-P  180 (305)
T ss_dssp             TTTEEEEECTT-SCEEEEE-CEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-C
T ss_pred             CCCEEEEECCC-CCEEEEE-eccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-c
Confidence            66889999986 5433222 111011123467899998 7788776    332             256777777544 3


Q ss_pred             ceeEEeeeccceEEEEEecCCCEEEEEecC------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE
Q 016458          242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG  315 (389)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  315 (389)
                      .. .+. .......++|+|+++.|+++...      +.|.+|++..+. +......... .......++++++|++. ++
T Consensus       181 ~~-~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~-~~~~pdgi~~d~~G~lw-v~  255 (305)
T 3dr2_A          181 LQ-RMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASV-PDGLPDGFCVDRGGWLW-SS  255 (305)
T ss_dssp             CE-EEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECC-SSSCCCSEEECTTSCEE-EC
T ss_pred             EE-EEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEEC-CCCCCCeEEECCCCCEE-Ee
Confidence            22 223 44567889999999988877665      789999987654 2111110000 11224678999999944 44


Q ss_pred             ecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          316 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       316 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      +.+ .|.+|+. .++.+..+.    .+. .+.+++|+++++.|..++.++..++
T Consensus       256 ~~~-gv~~~~~-~g~~~~~~~----~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          256 SGT-GVCVFDS-DGQLLGHIP----TPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             CSS-EEEEECT-TSCEEEEEE----CSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             cCC-cEEEECC-CCCEEEEEE----CCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            444 4999998 566666663    233 5889999999998888887765554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.64  E-value=3.3e-14  Score=120.34  Aligned_cols=269  Identities=11%  Similarity=0.026  Sum_probs=179.5

Q ss_pred             ccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEe----------cCCcEEEEeCCCCCeeEEEeeCC-------CcEE
Q 016458           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLPC-------AWVM  113 (389)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~~-------~~v~  113 (389)
                      ..++...+.+.++..-..+  .++++||+++++++.          .++.|.+||..+++.+..+..+.       ....
T Consensus        50 vID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~  127 (368)
T 1mda_H           50 VSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH  127 (368)
T ss_dssp             EEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT
T ss_pred             EEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcc
Confidence            4567778888888766666  799999999988886          36899999999999999987651       2356


Q ss_pred             EEEECCCCcEEEEecC--CCcEEE--EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          114 TCAFSPTGQSVACGGL--DSVCSI--FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       114 ~~~~~~~~~~l~~~~~--dg~i~v--w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                      .++++|+|++++++..  +..+.+  +|..+          ...+.. .+.   ....|++...+++.+.||.+.+.|+.
T Consensus       128 ~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----------v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~  193 (368)
T 1mda_H          128 IIGNCASSACLLFFLFGSSAAAGLSVPGASD----------DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             SEEECTTSSCEEEEECSSSCEEEEEETTTEE----------EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred             eEEEcCCCCEEEEEccCCCCeEEEEEEchhh----------ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECc
Confidence            8999999999998865  456888  88754          111111 011   22346666677888889999999988


Q ss_pred             C-----CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc-ceeEEee----------eccce
Q 016458          190 T-----GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFHG----------HEGDV  253 (389)
Q Consensus       190 ~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~----------~~~~i  253 (389)
                      +     ++......... .....+.   . .+..+ .++..+. +.+.+.|...... .+..+..          .....
T Consensus       194 ~~~~~~~~v~~~~t~~i-~vg~~P~---~-~~~~~-~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~  266 (368)
T 1mda_H          194 AAPAAAGIVGAQCTGAQ-NCSSQAA---Q-ANYPG-MLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF  266 (368)
T ss_dssp             SSCCCCEECCCCSCTTS-CBCSCCE---E-ETTTT-EEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSS
T ss_pred             cccccCCeEEEEeeeee-eCCCCcc---c-cccCC-EEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcc
Confidence            7     33221100000 1112222   3 55344 4444445 9999999864311 1111110          11122


Q ss_pred             EEEEEecCCCEEEEEec---------CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCE-EEEEe-cCCcEE
Q 016458          254 NTVKFFPDGNRFGTGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL-LFAGY-SNGDCY  322 (389)
Q Consensus       254 ~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~-~dg~i~  322 (389)
                      ..++++|+++.++++..         ++.+.++|+.+.+.+..+.....      ...++|+|||++ +++.. .++.|.
T Consensus       267 ~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~------p~gi~~s~Dg~~l~va~~~~~~~Vs  340 (368)
T 1mda_H          267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD------SDAIIAAQDGASDNYANSAGTEVLD  340 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE------ECEEEECCSSSCEEEEEETTTTEEE
T ss_pred             eeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCC------cceEEECCCCCEEEEEccCCCCeEE
Confidence            23789999998887643         23566999999998887765442      689999999984 55555 489999


Q ss_pred             EEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458          323 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (389)
Q Consensus       323 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (389)
                      ++|+.+++.+.++.    .. .....+++.+
T Consensus       341 VID~~t~kvv~~I~----vg-~~P~~i~~~~  366 (368)
T 1mda_H          341 IYDAASDQDQSSVE----LD-KGPESLSVQN  366 (368)
T ss_dssp             EEESSSCEEEEECC----CC-SCCCEEECCC
T ss_pred             EEECCCCcEEEEEE----CC-CCCCEEEeec
Confidence            99999999999883    22 3344566554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.62  E-value=2.5e-12  Score=111.70  Aligned_cols=244  Identities=9%  Similarity=0.100  Sum_probs=159.6

Q ss_pred             CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC--eEEEEe
Q 016458          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWD  187 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd  187 (389)
                      .....++|+++++++++...++.|++||..++.       ....... ..... ++|++++ ..++++..++  .|.+++
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~-------~~~~~~~-~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d  200 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK-------VTTVHPG-FKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYM  200 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTE-------EEEEEET-CCBCB-CEECTTS-SEEEEEBSSTTCEEEEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCE-------EEEeecc-CCCCc-eeEecCC-CcEEEEecCCCceEEEEE
Confidence            357899999999988888888999999998643       2222222 22233 8999998 5666666655  899999


Q ss_pred             CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE-----eeeccc--eEEEEEec
Q 016458          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-----HGHEGD--VNTVKFFP  260 (389)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~--i~~~~~~~  260 (389)
                      ...+.....+.. ........+.+++++|.++.+++ +..++.|+.||.....  ...+     .++...  ...++|+|
T Consensus       201 ~~~~~~~~~~g~-~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p  276 (409)
T 3hrp_A          201 KASGWAPTRIGQ-LGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYF  276 (409)
T ss_dssp             GGGTTCEEEEEE-CCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEET
T ss_pred             cCCCceeEEeee-ccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEEeC
Confidence            876654333210 00113456788999985555544 6678899999988652  2222     111111  13999999


Q ss_pred             C-CCEEEEEecCCeEEEEECCCCceeeEeeccC-CC---------CCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEccc
Q 016458          261 D-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-GE---------NEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLL  328 (389)
Q Consensus       261 ~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~---------~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  328 (389)
                      + +.++++-..++.|+.|+....  ...+.... ..         ........++++++|+++++-. .++.|+.|++.+
T Consensus       277 ~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~  354 (409)
T 3hrp_A          277 VDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD  354 (409)
T ss_dssp             TTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred             CCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence            5 555666667889999997643  22222211 00         0122478999999999777776 788999999877


Q ss_pred             ceEEEeecCc-C---------CCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          329 AKVVLNLGSL-Q---------NSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       329 ~~~~~~~~~~-~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      +......... .         ...-.....++++++|.++++-..++.|+.
T Consensus       355 G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~  405 (409)
T 3hrp_A          355 GYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK  405 (409)
T ss_dssp             TEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEE
T ss_pred             CEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEE
Confidence            7654333110 0         011246889999999888888878888887

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.61  E-value=5.4e-14  Score=119.27  Aligned_cols=180  Identities=12%  Similarity=0.061  Sum_probs=131.7

Q ss_pred             ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEE-----ecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEE
Q 016458          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV-----FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW  234 (389)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  234 (389)
                      ++..+++++.. .++++|+.++ +.+|++........     +.......+.. |+.++|   ++++|+++ .++.|++|
T Consensus        39 ~~nlLais~~~-gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCC-CEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence            58889999987 6788888875 55598654320000     00000023445 999999   55777777 88999999


Q ss_pred             eCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEE
Q 016458          235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA  314 (389)
Q Consensus       235 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  314 (389)
                      |+++. ........|..++.++.+.+.  .+++++.||.|.+||+.++.... ..        ..|++++|||+|  +++
T Consensus       112 dv~sl-~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~~--------~~Vs~v~WSpkG--~~v  177 (388)
T 1xip_A          112 DLEEL-SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-LA--------QNVTSFDVTNSQ--LAV  177 (388)
T ss_dssp             ESSST-TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-EE--------ESEEEEEECSSE--EEE
T ss_pred             Echhh-hccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-cc--------CCceEEEEcCCc--eEE
Confidence            99887 455566678888888877654  38889999999999999877643 11        139999999999  678


Q ss_pred             EecCCcEEEEEcccceE--EEeecCcC-----CCCCCCeeEEEECCCCCeEEe
Q 016458          315 GYSNGDCYVWDTLLAKV--VLNLGSLQ-----NSHEGRITCLGLSADGSALCT  360 (389)
Q Consensus       315 ~~~dg~i~i~d~~~~~~--~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~  360 (389)
                      |..||.+++|+...+..  ..++....     .+|...|.++.|.+++.++++
T Consensus       178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            99999999999887774  44442110     146789999999999998887

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.61  E-value=9.3e-12  Score=104.95  Aligned_cols=228  Identities=17%  Similarity=0.112  Sum_probs=148.0

Q ss_pred             EEEEEECCC-CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC
Q 016458          112 VMTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT  190 (389)
Q Consensus       112 v~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  190 (389)
                      .....|+|+ +.++++...++.|..|+..++.        ...+ .....+.++.+.+++ .++++ +.+ .|.+||..+
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~--------~~~~-~~~~~v~~i~~~~dg-~l~v~-~~~-gl~~~d~~~  118 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGR--------KTVH-ALPFMGSALAKISDS-KQLIA-SDD-GLFLRDTAT  118 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTE--------EEEE-ECSSCEEEEEEEETT-EEEEE-ETT-EEEEEETTT
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCc--------EEEE-ECCCcceEEEEeCCC-eEEEE-ECC-CEEEEECCC
Confidence            467789997 4556666678899999987643        1112 124578999999987 55544 444 499999988


Q ss_pred             CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC------CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCE
Q 016458          191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR  264 (389)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  264 (389)
                      ++........ .......+..++++| +++++++...      .+.|..++  .+ . +..+..+......++|+|+++.
T Consensus       119 g~~~~~~~~~-~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g-~-~~~~~~~~~~~~~i~~s~dg~~  192 (326)
T 2ghs_A          119 GVLTLHAELE-SDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KG-K-VTKLFADISIPNSICFSPDGTT  192 (326)
T ss_dssp             CCEEEEECSS-TTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TT-E-EEEEEEEESSEEEEEECTTSCE
T ss_pred             CcEEEEeeCC-CCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CC-c-EEEeeCCCcccCCeEEcCCCCE
Confidence            8754433110 011224588999998 6776665432      24565666  22 2 3333334456789999999987


Q ss_pred             EEEE-ecCCeEEEEECC--CC-cee--eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCc
Q 016458          265 FGTG-SDDGTCRLFDIR--TG-HQL--QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL  338 (389)
Q Consensus       265 l~~~-~~dg~i~i~d~~--~~-~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  338 (389)
                      ++.+ +.++.|.+||+.  ++ ...  ..+....  ........++++++|++.++...++.|.+||. +++.+..+   
T Consensus       193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~--~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i---  266 (326)
T 2ghs_A          193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST--GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARY---  266 (326)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT--TSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEE---
T ss_pred             EEEEECCCCEEEEEEcccccCCcccCceEEEECC--CCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEE---
Confidence            7555 457899999986  55 321  1221111  11123678999999987777767788999998 56666666   


Q ss_pred             CCCCCCCeeEEEEC-CCCCeEEeeeCC
Q 016458          339 QNSHEGRITCLGLS-ADGSALCTGSWD  364 (389)
Q Consensus       339 ~~~~~~~v~~~~~~-~~~~~l~~~~~d  364 (389)
                       ..+...+++++|+ +++..|+.++..
T Consensus       267 -~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          267 -EVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             -ECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             -ECCCCCcEEEEEecCCCCEEEEEecC
Confidence             3455679999998 888777555443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.60  E-value=2.1e-14  Score=121.74  Aligned_cols=183  Identities=11%  Similarity=0.032  Sum_probs=131.5

Q ss_pred             CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCC----CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEE
Q 016458          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD----KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL  185 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  185 (389)
                      .+++.+++++...++++|+.++ +.+|++.....    ......... ...+.. |+.++|  ++ ..|+++ .++.|++
T Consensus        38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v  110 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HG-DQVLVS-TRNALYS  110 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ET-TEEEEE-ESSEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CC-CEEEEE-cCCcEEE
Confidence            3689999999999999999885 56698764220    000111111 223556 999999  55 677777 8899999


Q ss_pred             EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEE
Q 016458          186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF  265 (389)
Q Consensus       186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  265 (389)
                      ||+.+.......     ..+...+.++.+.+.  + +++++.||.|.+||+... ...    .+...|++++|+|+|  +
T Consensus       111 ~dv~sl~~~~~~-----~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~-~~~----~~~~~Vs~v~WSpkG--~  175 (388)
T 1xip_A          111 LDLEELSEFRTV-----TSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTK-STK----QLAQNVTSFDVTNSQ--L  175 (388)
T ss_dssp             EESSSTTCEEEE-----EECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTC-CEE----EEEESEEEEEECSSE--E
T ss_pred             EEchhhhccCcc-----ceeecceeeEEecCC--C-EEEEECCCCEEEEEccCC-ccc----cccCCceEEEEcCCc--e
Confidence            999877655444     355667888777653  2 888899999999999866 322    245689999999999  7


Q ss_pred             EEEecCCeEEEEECCCCce--eeEeeccCC----CCCCCCeeEEEeCCCCCEEEE
Q 016458          266 GTGSDDGTCRLFDIRTGHQ--LQVYYQQHG----ENEIPHVTSIAFSISGRLLFA  314 (389)
Q Consensus       266 ~~~~~dg~i~i~d~~~~~~--~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~  314 (389)
                      +.|..||.+++|+...+..  ...+.....    ..+...|.++.|.+++.++++
T Consensus       176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            8899999999999887664  444422110    113456999999999998887

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.59  E-value=1.6e-13  Score=116.18  Aligned_cols=258  Identities=8%  Similarity=-0.080  Sum_probs=171.3

Q ss_pred             cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec----------CCCcEEEEeCCCCCCCCCCCcceeeeccc--
Q 016458           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVSRMLSGH--  157 (389)
Q Consensus        90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~--  157 (389)
                      +|.++|..+++.+.++.....+  .+.++|++++++++.          .++.|.+||..+.+       ....+...  
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-------vv~~I~v~~~  117 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL-------PIADIELPDA  117 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC-------EEEEEEETTS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC-------EEEEEECCCc
Confidence            7889999999999999988776  799999999998886          36889999999855       44444322  


Q ss_pred             -----ccceEEEEEeeCCCcEEEEeeC--CCeEEE--EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC
Q 016458          158 -----KGYVSCCQYVPDEDTHLITSSG--DQTCVL--WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  228 (389)
Q Consensus       158 -----~~~v~~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  228 (389)
                           ......+.++|++. +++.+..  +..|.+  +|..+   ...+..    .  ..   ..+.|.....+++.+.|
T Consensus       118 ~~~~~g~~P~~ia~SpDGk-~lyVan~~~~~~v~V~~iD~~t---v~~i~v----~--~~---~~~~p~g~~~~~~~~~d  184 (368)
T 1mda_H          118 PRFSVGPRVHIIGNCASSA-CLLFFLFGSSAAAGLSVPGASD---DQLTKS----A--SC---FHIHPGAAATHYLGSCP  184 (368)
T ss_dssp             CSCCBSCCTTSEEECTTSS-CEEEEECSSSCEEEEEETTTEE---EEEEEC----S--SC---CCCEEEETTEEECCCCT
T ss_pred             cccccCCCcceEEEcCCCC-EEEEEccCCCCeEEEEEEchhh---ceEEEC----C--Cc---eEEccCCCeEEEEEcCC
Confidence                 12355789999984 5665543  467888  89877   344421    1  11   12334355566777789


Q ss_pred             CceEEEeCCC----CCccee----EEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce--eeEeeccC-----C
Q 016458          229 STARLWDTRV----ASRAVR----TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ--LQVYYQQH-----G  293 (389)
Q Consensus       229 g~i~i~d~~~----~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~-----~  293 (389)
                      |.+.+.|+..    ..+...    .+.....+.   . ++++..++..+. +.+.+.|+.....  ...+....     .
T Consensus       185 g~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~  259 (368)
T 1mda_H          185 ASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKAD  259 (368)
T ss_dssp             TSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHT
T ss_pred             CCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccc
Confidence            9999999876    212211    011112333   3 666666666666 9999999865321  12111100     0


Q ss_pred             CCCCCCeeEEEeCCCCCEEEEEec-C--------CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCe-EEeee-
Q 016458          294 ENEIPHVTSIAFSISGRLLFAGYS-N--------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA-LCTGS-  362 (389)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~-d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~-  362 (389)
                      .........++++|+++.++++.. +        +.+.++|+.+.+.+..+.    . .....+|+|+|||++ +++.. 
T Consensus       260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~----v-g~~p~gi~~s~Dg~~l~va~~~  334 (368)
T 1mda_H          260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS----N-GHDSDAIIAAQDGASDNYANSA  334 (368)
T ss_dssp             TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE----E-EEEECEEEECCSSSCEEEEEET
T ss_pred             ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE----C-CCCcceEEECCCCCEEEEEccC
Confidence            000001222689999998887643 2        357799999999988873    2 226889999999984 56666 


Q ss_pred             CCCeeEEeecceecccCcccC
Q 016458          363 WDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       363 ~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      .++.|.+    +|+.+++...
T Consensus       335 ~~~~VsV----ID~~t~kvv~  351 (368)
T 1mda_H          335 GTEVLDI----YDAASDQDQS  351 (368)
T ss_dssp             TTTEEEE----EESSSCEEEE
T ss_pred             CCCeEEE----EECCCCcEEE
Confidence            5999999    9999998763

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.58  E-value=3e-12  Score=107.02  Aligned_cols=236  Identities=11%  Similarity=0.069  Sum_probs=156.5

Q ss_pred             eecccccCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458           61 RTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN  139 (389)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~  139 (389)
                      ..+..+.......+|+|+++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.+
T Consensus        38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            34444555678899999998 6677778899999997 454 45566667779999999999977776667889999875


Q ss_pred             CCCCCCCCCcce-eeeccc-ccceEEEEEeeCCCcEEEE----eeC-------------CCeEEEEeCCCCeeEEEecCc
Q 016458          140 SPTDKDGNLPVS-RMLSGH-KGYVSCCQYVPDEDTHLIT----SSG-------------DQTCVLWDITTGLRTSVFGGE  200 (389)
Q Consensus       140 ~~~~~~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~  200 (389)
                      . .     .... ....+. ...+.++.+.++| .++++    |..             .+.|..+|..+++.....   
T Consensus       116 g-~-----~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---  185 (305)
T 3dr2_A          116 G-Q-----AHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---  185 (305)
T ss_dssp             S-C-----EEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---
T ss_pred             C-C-----EEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---
Confidence            2 2     1011 111111 1346789999987 56665    332             356888888666544332   


Q ss_pred             ccCCCCCCeeEEEeeCCCCcEEEEeeCC------CceEEEeCCCCCcceeE---E-eeeccceEEEEEecCCCEEEEEec
Q 016458          201 FQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRT---F-HGHEGDVNTVKFFPDGNRFGTGSD  270 (389)
Q Consensus       201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~---~-~~~~~~i~~~~~~~~~~~l~~~~~  270 (389)
                          .......++|+| +++.|+++...      +.|..||+....  +..   + ......+..++++++|++. +++.
T Consensus       186 ----~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~  257 (305)
T 3dr2_A          186 ----DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVDRGGWLW-SSSG  257 (305)
T ss_dssp             ----EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEECTTSCEE-ECCS
T ss_pred             ----cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEECCCCCEE-EecC
Confidence                123467899999 66666665554      689999987542  211   1 1123345678999999844 4444


Q ss_pred             CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458          271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (389)
Q Consensus       271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (389)
                      + .|.+|+. .++.+..+....      .+..++|+++++.|++++.++ ++.++
T Consensus       258 ~-gv~~~~~-~g~~~~~~~~~~------~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          258 T-GVCVFDS-DGQLLGHIPTPG------TASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             S-EEEEECT-TSCEEEEEECSS------CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             C-cEEEECC-CCCEEEEEECCC------ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence            4 5999997 466666665432      278899999999888887764 44443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.57  E-value=1.2e-12  Score=121.90  Aligned_cols=243  Identities=15%  Similarity=0.137  Sum_probs=156.0

Q ss_pred             CcEEEEEECCCCcEEEEe-----cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC----
Q 016458          110 AWVMTCAFSPTGQSVACG-----GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----  180 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----  180 (389)
                      ..+..++|||||++||.+     +....|++||+.++.       .... ..+......++|+ |++ .|+.++.+    
T Consensus       129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~-------~~~~-~~~~~k~~~~~Ws-Dg~-~l~y~~~~~~~~  198 (693)
T 3iuj_A          129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ-------PLET-PLKDVKFSGISWL-GNE-GFFYSSYDKPDG  198 (693)
T ss_dssp             CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS-------EEEE-EEEEEESCCCEEE-TTT-EEEEEESSCCC-
T ss_pred             EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC-------CCcc-ccCCceeccEEEe-CCC-EEEEEEecCccc
Confidence            457888999999998853     333579999999855       1111 1111113567899 884 55555555    


Q ss_pred             ---------CeEEEEeCCCCee--EEEecCcccCC-CCCCeeEEEeeCCCCcEEE-EeeC---CCceEEEeCCCCCccee
Q 016458          181 ---------QTCVLWDITTGLR--TSVFGGEFQSG-HTADVLSVSISGSNSRMFV-SGSC---DSTARLWDTRVASRAVR  244 (389)
Q Consensus       181 ---------g~i~iwd~~~~~~--~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~-~~~~---dg~i~i~d~~~~~~~~~  244 (389)
                               ..|++|++.++..  ...+..   .. +.....++.++| ++++|+ +...   +..|+++|+..+.....
T Consensus       199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~---~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~  274 (693)
T 3iuj_A          199 SELSARTDQHKVYFHRLGTAQEDDRLVFGA---IPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLL  274 (693)
T ss_dssp             ------CCCCEEEEEETTSCGGGCEEEESC---SGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCE
T ss_pred             ccccccCCCcEEEEEECCCCcccceEEEec---CCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceE
Confidence                     3499999987653  233311   12 334578899999 566554 3332   35899999987644566


Q ss_pred             EEeeeccceEEEEEecCCCEEEEEec----CCeEEEEECCCCce--eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC
Q 016458          245 TFHGHEGDVNTVKFFPDGNRFGTGSD----DGTCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN  318 (389)
Q Consensus       245 ~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (389)
                      .+..+....... +++++..|+..+.    .+.|..+|+.++..  ...+......     +.  .|++++++|+....+
T Consensus       275 ~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-----~~--~~s~~g~~lv~~~~~  346 (693)
T 3iuj_A          275 TVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-----VL--TVHSGSGYLFAEYMV  346 (693)
T ss_dssp             EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-----CE--EEEEETTEEEEEEEE
T ss_pred             EEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-----EE--EEEEECCEEEEEEEE
Confidence            676666665555 6676666655443    36799999987654  2333332221     33  888999888776554


Q ss_pred             C---cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC----CeeEEeecceecccCccc
Q 016458          319 G---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD----TNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       319 g---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~~~~W~~~~~~~~  382 (389)
                      +   .|++||+..+. ...+.   ....+.+..+.+++++..|+....+    +.+..    ||+.+++..
T Consensus       347 ~g~~~l~~~d~~g~~-~~~l~---~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~----~d~~~g~~~  409 (693)
T 3iuj_A          347 DATARVEQFDYEGKR-VREVA---LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYR----FEPKSGAIS  409 (693)
T ss_dssp             TTEEEEEEECTTSCE-EEEEC---CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEE----ECTTTCCEE
T ss_pred             CCeeEEEEEECCCCe-eEEee---cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEE----EECCCCeEE
Confidence            4   68899987544 34442   2345567888888888877666554    78888    999887654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.56  E-value=1.3e-12  Score=120.76  Aligned_cols=283  Identities=12%  Similarity=0.077  Sum_probs=184.1

Q ss_pred             CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc-----------EEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-----------VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (389)
Q Consensus        79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (389)
                      +..|++++.++.|..+|..+|+.+..+......           ...+++  .+..+++++.|+.+..+|..+++     
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~-----  149 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGK-----  149 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC-----
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCC-----
Confidence            457777788899999999999998887654310           011222  46678888899999999998865     


Q ss_pred             Ccceeeeccc-c----cceEEEEEeeCCCcEEEEeeC------CCeEEEEeCCCCeeEEEecCcccCC------------
Q 016458          148 LPVSRMLSGH-K----GYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQSG------------  204 (389)
Q Consensus       148 ~~~~~~~~~~-~----~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~------------  204 (389)
                        ..-.+..+ .    ..+..--...+  ..++.++.      +|.|+.+|..+++.+..+.......            
T Consensus       150 --~~W~~~~~~~~~~~~~~~~~p~v~~--~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g  225 (677)
T 1kb0_A          150 --EVWHQNTFEGQKGSLTITGAPRVFK--GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRA  225 (677)
T ss_dssp             --EEEEEETTTTCCSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHH
T ss_pred             --EEeeecCCcCcCcCcccccCcEEEC--CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccc
Confidence              22222221 0    11111111122  24555543      7999999999999988774321110            


Q ss_pred             ---------------CCCCeeEEEeeCCCCcEEEEeeCCC-------------------ceEEEeCCCCCcceeEEee--
Q 016458          205 ---------------HTADVLSVSISGSNSRMFVSGSCDS-------------------TARLWDTRVASRAVRTFHG--  248 (389)
Q Consensus       205 ---------------~~~~v~~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~--  248 (389)
                                     .......++++| ..++++.++.++                   .|..+|.+++ +.+-.+..  
T Consensus       226 ~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG-~~~W~~~~~~  303 (677)
T 1kb0_A          226 ARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG-KYKWHYQETP  303 (677)
T ss_dssp             HTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-CEEEEEESST
T ss_pred             cccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC-CEEEEEecCC
Confidence                           001113567888 566777766553                   4899999987 55444432  


Q ss_pred             ec-------cceEEEEEecCC---CEEEEEecCCeEEEEECCCCceeeEeeccCCC------CCC---------------
Q 016458          249 HE-------GDVNTVKFFPDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE------NEI---------------  297 (389)
Q Consensus       249 ~~-------~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~---------------  297 (389)
                      |.       ....-+....+|   ..++.++.+|.++++|..+++.+.........      ...               
T Consensus       304 ~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~  383 (677)
T 1kb0_A          304 GDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQ  383 (677)
T ss_dssp             TCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCE
T ss_pred             CcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCcc
Confidence            21       122233344477   68999999999999999999988766432110      000               


Q ss_pred             ---------CCeeEEEeCCCCCEEEEEecC-------------------------------------------CcEEEEE
Q 016458          298 ---------PHVTSIAFSISGRLLFAGYSN-------------------------------------------GDCYVWD  325 (389)
Q Consensus       298 ---------~~i~~~~~~~~~~~l~~~~~d-------------------------------------------g~i~i~d  325 (389)
                               ..-..++|+|++.++++...+                                           |.|..||
T Consensus       384 ~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D  463 (677)
T 1kb0_A          384 DAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWD  463 (677)
T ss_dssp             ECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEE
T ss_pred             EECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEe
Confidence                     001257889998888876432                                           6799999


Q ss_pred             cccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          326 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      +.+++.+....     +..++....+..++..++.++.||.+++    ||..+|+...
T Consensus       464 ~~tG~~~W~~~-----~~~~~~~g~~~~~g~~v~~g~~dg~l~a----~D~~tG~~lw  512 (677)
T 1kb0_A          464 PVAQKAAWSVE-----HVSPWNGGTLTTAGNVVFQGTADGRLVA----YHAATGEKLW  512 (677)
T ss_dssp             TTTTEEEEEEE-----ESSSCCCCEEEETTTEEEEECTTSEEEE----EETTTCCEEE
T ss_pred             CCCCcEEeecC-----CCCCCcCcceEeCCCEEEEECCCCcEEE----EECCCCceee
Confidence            99999998873     2334444556667778889999999999    9999998753

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.56  E-value=9.9e-12  Score=104.78  Aligned_cols=226  Identities=12%  Similarity=0.050  Sum_probs=146.0

Q ss_pred             cEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458           69 KVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (389)
Q Consensus        69 ~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (389)
                      -..+.+|+|++. ++++...++.|..||..+++.. .+.. ...+.+++|+++++++++. .+ .|.+||..++..    
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~----  121 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL----  121 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE----
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE----
Confidence            356789999754 5666667889999998876543 3332 4579999999999877765 34 489999876431    


Q ss_pred             Ccceeeec--ccccceEEEEEeeCCCcEEEEeeC------CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458          148 LPVSRMLS--GHKGYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (389)
Q Consensus       148 ~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (389)
                       .......  .....+.++.++|+| +++++...      .+.|..++  +++.....      ........++|+| ++
T Consensus       122 -~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~------~~~~~~~~i~~s~-dg  190 (326)
T 2ghs_A          122 -TLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKVTKLF------ADISIPNSICFSP-DG  190 (326)
T ss_dssp             -EEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEEEEEE------EEESSEEEEEECT-TS
T ss_pred             -EEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcEEEee------CCCcccCCeEEcC-CC
Confidence             1111111  112468899999998 45544332      35666666  45443322      1223467899998 55


Q ss_pred             c-EEEEeeCCCceEEEeCC--CC-Cc-ceeEE---eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeecc
Q 016458          220 R-MFVSGSCDSTARLWDTR--VA-SR-AVRTF---HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ  291 (389)
Q Consensus       220 ~-~l~~~~~dg~i~i~d~~--~~-~~-~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  291 (389)
                      + ++++.+.++.|.+||+.  ++ .. ....+   ......+..++++++|.+.++...++.|.+||. +++.+..+...
T Consensus       191 ~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~  269 (326)
T 2ghs_A          191 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP  269 (326)
T ss_dssp             CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS
T ss_pred             CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC
Confidence            5 44555567899999985  32 11 11122   122345678999999987777767789999998 56666655433


Q ss_pred             CCCCCCCCeeEEEeC-CCCCEEEEEecCC
Q 016458          292 HGENEIPHVTSIAFS-ISGRLLFAGYSNG  319 (389)
Q Consensus       292 ~~~~~~~~i~~~~~~-~~~~~l~~~~~dg  319 (389)
                      ..     .+++++|+ ++++.|++++..+
T Consensus       270 ~~-----~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          270 GK-----QTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             CS-----BEEEEEEESTTSCEEEEEEBCT
T ss_pred             CC-----CcEEEEEecCCCCEEEEEecCC
Confidence            22     38999998 8888776665443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.55  E-value=4.1e-16  Score=133.72  Aligned_cols=258  Identities=12%  Similarity=0.027  Sum_probs=144.5

Q ss_pred             CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccc
Q 016458           78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH  157 (389)
Q Consensus        78 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  157 (389)
                      ++..+++++.||.|+.||..+|+.+..+..  +.+.+..+..++..+++++.||.|+.||..+++.       ......+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-------~w~~~~~   78 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-------LTKLPFT   78 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-------SEECSCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-------eeeeecc
Confidence            467899999999999999999999988876  4455555666787888888999999999977542       1111111


Q ss_pred             c-cceE-EEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEe
Q 016458          158 K-GYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD  235 (389)
Q Consensus       158 ~-~~v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  235 (389)
                      . ..+. ...+. .+ ..+++++.++.|+.||..+++....+.     .+.    ...++| .+..+++++.++.|+.||
T Consensus        79 ~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~-----~~~----~~~~~p-~~~~v~~~~~dg~v~a~d  146 (369)
T 2hz6_A           79 IPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLS-----SAF----ADSLSP-STSLLYLGRTEYTITMYD  146 (369)
T ss_dssp             HHHHHTTCSCC-------CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEECCC
T ss_pred             CccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEec-----CCC----cccccc-cCCEEEEEecCCEEEEEE
Confidence            1 1110 00111 22 467888999999999999999887762     221    133455 667888889999999999


Q ss_pred             CCCCCcceeEEeeeccceEEEEEecCC---CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEE
Q 016458          236 TRVASRAVRTFHGHEGDVNTVKFFPDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL  312 (389)
Q Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (389)
                      .+++ +.+..+..+.  ....++.++.   ..+++++.||.|..||..+++.+........     .+....++++|...
T Consensus       147 ~~tG-~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~p-----v~~~~~~~~dg~~~  218 (369)
T 2hz6_A          147 TKTR-ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASP-----VVAFYVWQREGLRK  218 (369)
T ss_dssp             SSSS-SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSC-----EEEEEECTTSSCEE
T ss_pred             CCCC-CEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCc-----eEEEEEecCCceEe
Confidence            9987 4444443221  1223333322   5677888999999999999998776653221     13344556666432


Q ss_pred             ----EEEecCCcEEEEEcccce----EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          313 ----FAGYSNGDCYVWDTLLAK----VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       313 ----~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                          +.+  ++.++.+|..+++    .......     .+.+.+..  -.+..|+.++.||.+..    .+..
T Consensus       219 v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~~-----~~~~~sp~--~~~g~lyv~~~~G~l~a----l~~~  278 (369)
T 2hz6_A          219 VMHINVA--VETLRYLTFMSGEVGRITKWKYPF-----PKETEAKS--KLTPTLYVGKYSTSLYA----SPSM  278 (369)
T ss_dssp             ECCEEEE--HHHHHHHHHHHHHHHHHHTSCCCC-----CCHHHHHH--HSEEEECBEECSSCEEC----CEEE
T ss_pred             ccceeec--ccceeeeehhcCCcccceeeeecc-----Cccccccc--cccceEEEecccCCEEe----cCcc
Confidence                122  4457777777776    5544421     11221111  12446788888898888    7665

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.54  E-value=2.2e-12  Score=119.42  Aligned_cols=282  Identities=12%  Similarity=0.099  Sum_probs=179.6

Q ss_pred             CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc----------E-EEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW----------V-MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (389)
Q Consensus        79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (389)
                      +..|++++.++.|..+|..+|+.+..+......          + ..++.  .+..+++++.|+.+..+|..+++.    
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~----  143 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQR----  143 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE----
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCE----
Confidence            557888888899999999999999887654321          0 11111  356788888999999999988652    


Q ss_pred             Ccceeeecc--cc---cceEEEEEeeCCCcEEEEee------CCCeEEEEeCCCCeeEEEecCcccC-------------
Q 016458          148 LPVSRMLSG--HK---GYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQS-------------  203 (389)
Q Consensus       148 ~~~~~~~~~--~~---~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~-------------  203 (389)
                         .-....  +.   ..+.+--...++  .++.++      .+|.|..||..+++.+..+......             
T Consensus       144 ---~W~~~~~~~~~~~~~~~~sP~v~~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~  218 (689)
T 1yiq_A          144 ---AWSVDTRADHKRSYTITGAPRVVNG--KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIA  218 (689)
T ss_dssp             ---EEEEECCSCTTSCCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHH
T ss_pred             ---eeeecCcCCCCCCccccCCcEEECC--EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccc
Confidence               211111  10   111110011233  344443      3789999999999988876421000             


Q ss_pred             -------------CCCCCeeEEEeeCCCCcEEEEeeCCCc-------------------eEEEeCCCCCcceeEEee--e
Q 016458          204 -------------GHTADVLSVSISGSNSRMFVSGSCDST-------------------ARLWDTRVASRAVRTFHG--H  249 (389)
Q Consensus       204 -------------~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~--~  249 (389)
                                   ........++++| ..++++.++.++.                   |..+|.+++ +.+-.+..  |
T Consensus       219 ~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG-~~~W~~~~~~~  296 (689)
T 1yiq_A          219 AKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG-EYVWHYQTTPG  296 (689)
T ss_dssp             HTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC-CEEEEEESSTT
T ss_pred             ccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC-ceeEeeecCCc
Confidence                         0001112567887 6677888777653                   999999988 55544443  2


Q ss_pred             c-------cceEEEEEecCCC---EEEEEecCCeEEEEECCCCceeeEeeccCCC-----------------------C-
Q 016458          250 E-------GDVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-----------------------N-  295 (389)
Q Consensus       250 ~-------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----------------------~-  295 (389)
                      .       .++.......+|+   .++.++.+|.++++|..+++.+.........                       . 
T Consensus       297 d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~  376 (689)
T 1yiq_A          297 DAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNG  376 (689)
T ss_dssp             CCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSS
T ss_pred             ccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCC
Confidence            1       1222223333565   7889999999999999999987443221100                       0 


Q ss_pred             ----------CCCCeeEEEeCCCCCEEEEEec---------------------------------------------CCc
Q 016458          296 ----------EIPHVTSIAFSISGRLLFAGYS---------------------------------------------NGD  320 (389)
Q Consensus       296 ----------~~~~i~~~~~~~~~~~l~~~~~---------------------------------------------dg~  320 (389)
                                .......++|+|+..++++...                                             +|.
T Consensus       377 ~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~  456 (689)
T 1yiq_A          377 KRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGK  456 (689)
T ss_dssp             SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEE
T ss_pred             CeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCccee
Confidence                      0001223788898888877632                                             377


Q ss_pred             EEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          321 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       321 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      |..||+.+++.+....    .+ .++..-.+...+.++++++.||.++.    ||.++|++.
T Consensus       457 l~A~D~~tG~~~W~~~----~~-~~~~~g~~~tagglvf~gt~dg~l~a----~D~~tG~~l  509 (689)
T 1yiq_A          457 LIAWDPVKQQAAWEVP----YV-TIFNGGTLSTAGNLVFEGSADGRVIA----YAADTGEKL  509 (689)
T ss_dssp             EEEEETTTTEEEEEEE----ES-SSCCCCEEEETTTEEEEECTTSEEEE----EETTTCCEE
T ss_pred             EEEEECCCCCeEeEcc----CC-CCccCccceECCCEEEEECCCCcEEE----EECCCCccc
Confidence            9999999999998873    22 22333345556778999999999999    999999876

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.53  E-value=2.6e-11  Score=104.58  Aligned_cols=272  Identities=13%  Similarity=0.062  Sum_probs=171.3

Q ss_pred             CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC---------CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC
Q 016458           78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPC---------AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL  148 (389)
Q Consensus        78 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  148 (389)
                      .+..+++++.++.|..+|..+++.+.......         ..+.+. ...++..+++++.++.|..+|..+++      
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~------  124 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGT------  124 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCC------
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCC------
Confidence            35688888889999999999999887776532         222221 12245677888889999999998765      


Q ss_pred             cceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC
Q 016458          149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  228 (389)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  228 (389)
                       ..-.............. .+  ..++.++.++.|..+|..+++.......................   +..+++++.+
T Consensus       125 -~~W~~~~~~~~~~~p~~-~~--~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~v~~g~~~  197 (376)
T 3q7m_A          125 -VAWQTKVAGEALSRPVV-SD--GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FGAAVVGGDN  197 (376)
T ss_dssp             -EEEEEECSSCCCSCCEE-ET--TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TTEEEECCTT
T ss_pred             -EEEEEeCCCceEcCCEE-EC--CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CCEEEEEcCC
Confidence             22222211111111112 22  36888889999999999999888776321100000000122222   3467778889


Q ss_pred             CceEEEeCCCCCcceeEEeeecc-------ceEEEEEec--CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458          229 STARLWDTRVASRAVRTFHGHEG-------DVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (389)
Q Consensus       229 g~i~i~d~~~~~~~~~~~~~~~~-------~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (389)
                      +.+..+|..++ +.+........       .+..+...|  .+..+++++.++.+..+|..+++........       .
T Consensus       198 g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-------~  269 (376)
T 3q7m_A          198 GRVSAVLMEQG-QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-------S  269 (376)
T ss_dssp             TEEEEEETTTC-CEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-------C
T ss_pred             CEEEEEECCCC-cEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-------C
Confidence            99999999877 44433331110       000011111  3567888888999999999999877655421       1


Q ss_pred             eeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      ...+..  ++..+++++.++.|..+|..+++.......   .....+.....  .+..|+.++.+|.+.+    +|..+|
T Consensus       270 ~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~--~~~~l~v~~~~g~l~~----~d~~tG  338 (376)
T 3q7m_A          270 VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD---LLHRLLTSPVL--YNGNLVVGDSEGYLHW----INVEDG  338 (376)
T ss_dssp             EEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECT---TTTSCCCCCEE--ETTEEEEECTTSEEEE----EETTTC
T ss_pred             CCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecc---cCCCcccCCEE--ECCEEEEEeCCCeEEE----EECCCC
Confidence            334443  466888888999999999999998877631   11222222233  2457888889999999    999998


Q ss_pred             ccc
Q 016458          380 ALS  382 (389)
Q Consensus       380 ~~~  382 (389)
                      ++.
T Consensus       339 ~~~  341 (376)
T 3q7m_A          339 RFV  341 (376)
T ss_dssp             CEE
T ss_pred             cEE
Confidence            865

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.53  E-value=1.5e-10  Score=98.61  Aligned_cols=233  Identities=14%  Similarity=0.115  Sum_probs=150.2

Q ss_pred             CCCcEEEE-ecCCCcEEEEeCCCCCCCCCCCcceeeec------c-cccceEEEEEeeCCCcEEEEeeCC------CeEE
Q 016458          119 PTGQSVAC-GGLDSVCSIFNLNSPTDKDGNLPVSRMLS------G-HKGYVSCCQYVPDEDTHLITSSGD------QTCV  184 (389)
Q Consensus       119 ~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~------~-~~~~v~~~~~~~~~~~~l~~~~~d------g~i~  184 (389)
                      +++++|++ +..++.|.++|+.+..   ........+.      . -......+...|++  +++++..+      |.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p---~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~  167 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNP---REPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGIL  167 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCT---TSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCC---CCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEE
Confidence            77777765 5567899999997532   1223444442      1 11245567788887  56665554      7899


Q ss_pred             EEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-------------------CCCceEEEeCCCCCcceeE
Q 016458          185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-------------------CDSTARLWDTRVASRAVRT  245 (389)
Q Consensus       185 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~  245 (389)
                      ++|..+.+.+..+...  ......-..+-|+| +.+.+++..                   .+.+|.+||+.+. +.+..
T Consensus       168 vlD~~T~~v~~~~~~~--~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~~t  243 (462)
T 2ece_A          168 MLDHYSFEPLGKWEID--RGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRIHS  243 (462)
T ss_dssp             EECTTTCCEEEECCSB--CTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEEEE
T ss_pred             EEECCCCeEEEEEccC--CCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEeeE
Confidence            9999999999888422  11222344678898 777777774                   3689999999975 66666


Q ss_pred             Eeee--ccceEEEEE--ecCCCEEEEEe------cCCeEEEEECCCCcee--eEeeccCC--CC-----------CCCCe
Q 016458          246 FHGH--EGDVNTVKF--FPDGNRFGTGS------DDGTCRLFDIRTGHQL--QVYYQQHG--EN-----------EIPHV  300 (389)
Q Consensus       246 ~~~~--~~~i~~~~~--~~~~~~l~~~~------~dg~i~i~d~~~~~~~--~~~~~~~~--~~-----------~~~~i  300 (389)
                      +..-  ......+.|  +|+++++++++      .++.|.+|....+...  ..+.....  ..           .....
T Consensus       244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p  323 (462)
T 2ece_A          244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV  323 (462)
T ss_dssp             EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred             EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence            6542  123455656  99999988777      4568887766543211  11100000  00           01246


Q ss_pred             eEEEeCCCCCEEEEEec-CCcEEEEEccc---ceEEEeecCcCCC------C------CCCeeEEEECCCCCeEEeee
Q 016458          301 TSIAFSISGRLLFAGYS-NGDCYVWDTLL---AKVVLNLGSLQNS------H------EGRITCLGLSADGSALCTGS  362 (389)
Q Consensus       301 ~~~~~~~~~~~l~~~~~-dg~i~i~d~~~---~~~~~~~~~~~~~------~------~~~v~~~~~~~~~~~l~~~~  362 (389)
                      ..+.+|+||++|+++.. .+.|.+||+..   .+.+..+..  .+      |      .+....++++|||++|+++.
T Consensus       324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t--GG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          324 TDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL--GGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC--BTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe--CCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            88999999999998875 57899999852   345544431  11      0      12368899999999999888

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.51  E-value=3e-12  Score=108.35  Aligned_cols=278  Identities=13%  Similarity=0.075  Sum_probs=173.3

Q ss_pred             CcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec
Q 016458           49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG  128 (389)
Q Consensus        49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  128 (389)
                      ...++ ...+....+..+...+.++...+++. |..++.+  |..+|. +++....+...........+.  +..+.+++
T Consensus        42 l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t  114 (330)
T 3hxj_A           42 LYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTS  114 (330)
T ss_dssp             TEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEEC
T ss_pred             EEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEe
Confidence            34455 44444444544555567788877774 5555544  888885 565544433332222222232  55677788


Q ss_pred             CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCC
Q 016458          129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD  208 (389)
Q Consensus       129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  208 (389)
                      .++.+..+|.. +.       ...........+.++...+++  .++.++.++.|..+|.. +.....+.     .....
T Consensus       115 ~~~~l~~~d~~-g~-------~~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~~~~~~~-----~~~~~  178 (330)
T 3hxj_A          115 MDGHLYAINTD-GT-------EKWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GTEKWRFK-----TNDAI  178 (330)
T ss_dssp             TTSEEEEECTT-SC-------EEEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SCEEEEEE-----CSSCC
T ss_pred             cCCEEEEEcCC-CC-------EEEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CCEeEEEe-----cCCCc
Confidence            88999999877 33       222233333344555555554  47778888999999998 77666652     33445


Q ss_pred             eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEe
Q 016458          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY  288 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  288 (389)
                      +.++...+ ++.+++ ++  +.|..+| .++ ............+.++...+++. |.+++.++.|..+|. ++.....+
T Consensus       179 ~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g-~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~  250 (330)
T 3hxj_A          179 TSAASIGK-DGTIYF-GS--DKVYAIN-PDG-TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRF  250 (330)
T ss_dssp             CSCCEECT-TCCEEE-ES--SSEEEEC-TTS-CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEE
T ss_pred             eeeeEEcC-CCEEEE-Ee--CEEEEEC-CCC-cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEe
Confidence            66666655 555554 44  8899999 544 44445544455678888887775 566677788888874 56655555


Q ss_pred             eccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458          289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK  368 (389)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  368 (389)
                      .....     .+..+.+.+++ .|.+++.+|.|..+|. +++....+    ......+.++..+++|. |..++.+|.++
T Consensus       251 ~~~~~-----~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~----~~~~~~~~~~~~d~~g~-l~~gt~~G~~~  318 (330)
T 3hxj_A          251 KTGKR-----IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNF----ETGSWIIATPVIDENGT-IYFGTRNGKFY  318 (330)
T ss_dssp             ECSSC-----CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEE----ECSSCCCSCCEECTTCC-EEEECTTSCEE
T ss_pred             eCCCC-----ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEE----EcCCccccceEEcCCCE-EEEEcCCCeEE
Confidence            43222     13445555555 5667778888999996 67766666    33455677788877776 66688899998


Q ss_pred             E
Q 016458          369 V  369 (389)
Q Consensus       369 i  369 (389)
                      +
T Consensus       319 ~  319 (330)
T 3hxj_A          319 A  319 (330)
T ss_dssp             E
T ss_pred             E
Confidence            8

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.50  E-value=1.3e-11  Score=114.08  Aligned_cols=262  Identities=11%  Similarity=0.097  Sum_probs=169.6

Q ss_pred             CCeEEEEecCCcEEEEeCCCCCeeEEEeeC-C----CcEEEEEECCCCcEEEEecC------CCcEEEEeCCCCCCCCCC
Q 016458           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLP-C----AWVMTCAFSPTGQSVACGGL------DSVCSIFNLNSPTDKDGN  147 (389)
Q Consensus        79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~l~~~~~------dg~i~vw~~~~~~~~~~~  147 (389)
                      +..|++++.|+.|..+|..+|+.+..+... .    ..+..--.. .+..+++++.      +|.|+.||..+++.    
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~----  202 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGER----  202 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCE----
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcE----
Confidence            457888889999999999999999888765 2    111110000 2345555543      68999999988652    


Q ss_pred             Ccceeeec--------------------------------ccccceEEEEEeeCCCcEEEEeeCCC--------------
Q 016458          148 LPVSRMLS--------------------------------GHKGYVSCCQYVPDEDTHLITSSGDQ--------------  181 (389)
Q Consensus       148 ~~~~~~~~--------------------------------~~~~~v~~~~~~~~~~~~l~~~~~dg--------------  181 (389)
                         .-.+.                                +.......+++.+++ .+++.++.++              
T Consensus       203 ---~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd  278 (677)
T 1kb0_A          203 ---KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGD  278 (677)
T ss_dssp             ---EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCC
T ss_pred             ---EEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCC
Confidence               11111                                111112356788876 5677666554              


Q ss_pred             -----eEEEEeCCCCeeEEEecCcccCC----CCCCeeEEEeeCCCC---cEEEEeeCCCceEEEeCCCCCcceeEEeee
Q 016458          182 -----TCVLWDITTGLRTSVFGGEFQSG----HTADVLSVSISGSNS---RMFVSGSCDSTARLWDTRVASRAVRTFHGH  249 (389)
Q Consensus       182 -----~i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  249 (389)
                           .|..+|..+++....+.......    .......+.... ++   ..++.++.+|.++++|.+++ +.+......
T Consensus       279 ~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG-~~l~~~~~~  356 (677)
T 1kb0_A          279 NLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNG-KFISAKNFV  356 (677)
T ss_dssp             CTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESS
T ss_pred             CeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCC-CEecccccc
Confidence                 59999999999988874321000    011222233333 44   68899999999999999987 554443311


Q ss_pred             c-----------cce------------------------EEEEEecCCCEEEEEecC-----------------------
Q 016458          250 E-----------GDV------------------------NTVKFFPDGNRFGTGSDD-----------------------  271 (389)
Q Consensus       250 ~-----------~~i------------------------~~~~~~~~~~~l~~~~~d-----------------------  271 (389)
                      .           .++                        ..++++|+..++++...+                       
T Consensus       357 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~  436 (677)
T 1kb0_A          357 PVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQS  436 (677)
T ss_dssp             CCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTG
T ss_pred             ccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccc
Confidence            0           001                        157889988888876432                       


Q ss_pred             --------------------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE
Q 016458          272 --------------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  331 (389)
Q Consensus       272 --------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (389)
                                          |.|..||+.+++.+..+.....      +....+..++..+++++.||.+++||..+++.
T Consensus       437 ~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~------~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          437 GTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSP------WNGGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             GGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCC------CcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence                                7899999999998877754321      33445666788899999999999999999999


Q ss_pred             EEeecCcCCCCCCCeeEEEECCCCCeEEe
Q 016458          332 VLNLGSLQNSHEGRITCLGLSADGSALCT  360 (389)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  360 (389)
                      +..+..   .+.....-+.|..+|+.+++
T Consensus       511 lw~~~~---~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          511 LWEAPT---GTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EEEEEC---SSCCCSCCEEEEETTEEEEE
T ss_pred             eeeeeC---CCCcccCCEEEEeCCEEEEE
Confidence            998853   33233344556677764443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.49  E-value=1.9e-10  Score=99.11  Aligned_cols=260  Identities=12%  Similarity=0.017  Sum_probs=162.6

Q ss_pred             CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccc
Q 016458           78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH  157 (389)
Q Consensus        78 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  157 (389)
                      ++..+++++.++.|..+|..+++.+...............  .+..+++++.++.+..+|..+++       ........
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~-------~~W~~~~~  172 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGA-------VKWTVNLD  172 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCC-------EEEEEECC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCc-------EEEEEeCC
Confidence            3457888889999999999999998777655322111112  24577888889999999998755       22222111


Q ss_pred             ccce-----EEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCC--CC---e-eEEEeeCCCCcEEEEee
Q 016458          158 KGYV-----SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT--AD---V-LSVSISGSNSRMFVSGS  226 (389)
Q Consensus       158 ~~~v-----~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~---v-~~~~~~~~~~~~l~~~~  226 (389)
                      ....     ...... +  ..++.++.++.|..+|..+++..............  ..   + .....   .+..+++++
T Consensus       173 ~~~~~~~~~~~~~~~-~--~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~  246 (376)
T 3q7m_A          173 MPSLSLRGESAPTTA-F--GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALA  246 (376)
T ss_dssp             C-----CCCCCCEEE-T--TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETTEEEEEC
T ss_pred             CCceeecCCCCcEEE-C--CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEe
Confidence            1100     111122 2  36788888999999999999888776321100000  00   1 11111   235667777


Q ss_pred             CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeC
Q 016458          227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  306 (389)
Q Consensus       227 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  306 (389)
                      .++.+..+|.+++ +.+....  ......+..  ++..+++++.++.|..+|..+++...........    .+..... 
T Consensus       247 ~~g~l~~~d~~tG-~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~----~~~~~~~-  316 (376)
T 3q7m_A          247 YNGNLTALDLRSG-QIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR----LLTSPVL-  316 (376)
T ss_dssp             TTSCEEEEETTTC-CEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTS----CCCCCEE-
T ss_pred             cCcEEEEEECCCC-cEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCC----cccCCEE-
Confidence            8999999999877 4443332  223344443  4668888889999999999999877665422111    1222222 


Q ss_pred             CCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCee-EEEECCCCCeEEeeeCCCeeEE
Q 016458          307 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       307 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                       .+..|++++.+|.|+++|..+++.+....    .....+. ....  .+..|+.++.+|.+..
T Consensus       317 -~~~~l~v~~~~g~l~~~d~~tG~~~~~~~----~~~~~~~~~~~~--~~~~l~v~~~~G~l~~  373 (376)
T 3q7m_A          317 -YNGNLVVGDSEGYLHWINVEDGRFVAQQK----VDSSGFQTEPVA--ADGKLLIQAKDGTVYS  373 (376)
T ss_dssp             -ETTEEEEECTTSEEEEEETTTCCEEEEEE----CCTTCBCSCCEE--ETTEEEEEBTTSCEEE
T ss_pred             -ECCEEEEEeCCCeEEEEECCCCcEEEEEe----cCCCcceeCCEE--ECCEEEEEeCCCEEEE
Confidence             35688889999999999999999887773    2222222 1222  2457888899999988

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.49  E-value=2.2e-11  Score=112.81  Aligned_cols=262  Identities=14%  Similarity=0.157  Sum_probs=166.3

Q ss_pred             CCeEEEEecCCcEEEEeCCCCCeeEEEeeC-C-CcEEEEEECC---CCcEEEEec------CCCcEEEEeCCCCCCCCCC
Q 016458           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLP-C-AWVMTCAFSP---TGQSVACGG------LDSVCSIFNLNSPTDKDGN  147 (389)
Q Consensus        79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~-~~v~~~~~~~---~~~~l~~~~------~dg~i~vw~~~~~~~~~~~  147 (389)
                      +..|++++.|+.|..+|..+|+.+..+... . .....+..+|   ++. +++++      .+|.|..||..+++.    
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~----  195 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKE----  195 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCE----
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcE----
Confidence            457888889999999999999998877653 1 1111111122   444 44443      368899999988652    


Q ss_pred             Ccceeeec-------------------------------ccccceEEEEEeeCCCcEEEEeeCCCe--------------
Q 016458          148 LPVSRMLS-------------------------------GHKGYVSCCQYVPDEDTHLITSSGDQT--------------  182 (389)
Q Consensus       148 ~~~~~~~~-------------------------------~~~~~v~~~~~~~~~~~~l~~~~~dg~--------------  182 (389)
                         .-.+.                               ++......+.+.|++ .+++.++.++.              
T Consensus       196 ---~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~  271 (689)
T 1yiq_A          196 ---AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDN  271 (689)
T ss_dssp             ---EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCC
T ss_pred             ---EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCc
Confidence               11110                               011111256788876 57787777763              


Q ss_pred             -----EEEEeCCCCeeEEEecCcccCC----CCCCeeEEEeeCCCCc---EEEEeeCCCceEEEeCCCCCcceeEEeeec
Q 016458          183 -----CVLWDITTGLRTSVFGGEFQSG----HTADVLSVSISGSNSR---MFVSGSCDSTARLWDTRVASRAVRTFHGHE  250 (389)
Q Consensus       183 -----i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  250 (389)
                           |..+|..+++....+.......    ............ ++.   .++.++.+|.++++|.+++ +.+.......
T Consensus       272 ~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~  349 (689)
T 1yiq_A          272 LFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRATG-ELLSAKGIVP  349 (689)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSC
T ss_pred             eeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCCC-CEeccccccc
Confidence                 9999999999988874311000    111222222222 333   7889999999999999887 4432211000


Q ss_pred             ----------------------------c-----------ceEEEEEecCCCEEEEEec---------------------
Q 016458          251 ----------------------------G-----------DVNTVKFFPDGNRFGTGSD---------------------  270 (389)
Q Consensus       251 ----------------------------~-----------~i~~~~~~~~~~~l~~~~~---------------------  270 (389)
                                                  .           .-..++|+|+..++++...                     
T Consensus       350 ~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~  429 (689)
T 1yiq_A          350 QSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSM  429 (689)
T ss_dssp             CSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTS
T ss_pred             cccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccc
Confidence                                        0           0113788898888877532                     


Q ss_pred             ------------------------CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458          271 ------------------------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       271 ------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (389)
                                              +|.|..||+.+++.+..+.....      ...-.+...+.++++|+.||.++.||.
T Consensus       430 ~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~------~~~g~~~tagglvf~gt~dg~l~a~D~  503 (689)
T 1yiq_A          430 YQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI------FNGGTLSTAGNLVFEGSADGRVIAYAA  503 (689)
T ss_dssp             CCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             cccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC------ccCccceECCCEEEEECCCCcEEEEEC
Confidence                                    37899999999998877755332      223355567889999999999999999


Q ss_pred             ccceEEEeecCcCCCCCCCeeEEEECCCCCeEEe
Q 016458          327 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT  360 (389)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  360 (389)
                      .+++.+..+..   .+.....-+.|..+|+..++
T Consensus       504 ~tG~~lw~~~~---~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          504 DTGEKLWEQPA---ASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             TTCCEEEEEEC---SSCCCSCCEEEEETTEEEEE
T ss_pred             CCCccceeeeC---CCCcccCceEEEECCEEEEE
Confidence            99999998853   22222234666677764433

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.49  E-value=6.2e-10  Score=90.98  Aligned_cols=251  Identities=9%  Similarity=0.039  Sum_probs=155.9

Q ss_pred             CeEEEEecCCcEEEEeCCCCCee-----EEEeeCCCcEEEEEECCCCcEEE-EecCCCcEEEEeCCCCCCCCCCCcceee
Q 016458           80 NRIVSASQDGRLIVWNALTSQKT-----HAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRM  153 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~  153 (389)
                      ++|+.+.. +.|+.+++......     ..+......+..++|++++..|+ +-..++.|..++.....       ....
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-------~~~~   73 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-------PTTI   73 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-------CEEE
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-------cEEE
Confidence            35555554 47888887654421     12222334578999999665555 44557899999987532       1222


Q ss_pred             ecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC--CCce
Q 016458          154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC--DSTA  231 (389)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i  231 (389)
                      ..........+++.++++.++++....+.|.++++.........     .........++++|.++.++++...  .+.|
T Consensus        74 ~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~-----~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I  148 (267)
T 1npe_A           74 IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF-----DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKI  148 (267)
T ss_dssp             ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSSCSSEEEEEEETTTTEEEEEECCSSSCEE
T ss_pred             EECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEE-----ECCCCCccEEEEeeCCCEEEEEECCCCCcEE
Confidence            22222467889999876566666677889999998754433322     1222457899999845555555433  4688


Q ss_pred             EEEeCCCCCcceeEEe-eeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC
Q 016458          232 RLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  309 (389)
Q Consensus       232 ~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  309 (389)
                      ..+++...  ....+. ..-.....++++|++..|+.+ ...+.|.++|+.......... ..     .....++..  +
T Consensus       149 ~~~~~dg~--~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~-----~~P~gi~~d--~  218 (267)
T 1npe_A          149 ETSHMDGT--NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GL-----QYPFAVTSY--G  218 (267)
T ss_dssp             EEEETTSC--CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CC-----CSEEEEEEE--T
T ss_pred             EEEecCCC--CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec-CC-----CCceEEEEe--C
Confidence            88887643  222222 222457899999987666554 456899999987543322222 11     124566654  4


Q ss_pred             CEEEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC
Q 016458          310 RLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS  356 (389)
Q Consensus       310 ~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (389)
                      ..|+.+. .++.|..+|..+++.+..+.   .+.......+++.|++.
T Consensus       219 ~~lyva~~~~~~v~~~d~~~g~~~~~i~---~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          219 KNLYYTDWKTNSVIAMDLAISKEMDTFH---PHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEEEEEEC---CSSCCCCCCEEEECSCC
T ss_pred             CEEEEEECCCCeEEEEeCCCCCceEEEc---cccccccceeeecCccC
Confidence            5555554 56799999999999888874   12222467788888764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.46  E-value=1.4e-14  Score=124.25  Aligned_cols=224  Identities=11%  Similarity=0.005  Sum_probs=123.7

Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC
Q 016458          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG  199 (389)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  199 (389)
                      ++..+++++.||.|+.||..+++       ....+..  +.+.+..+..++ ..+++++.||.|+.||..+++....+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~-------~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~   77 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGS-------IKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPF   77 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCC-------EEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC-------EEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeec
Confidence            57789999999999999998865       3333333  344444445554 5677788999999999998887666521


Q ss_pred             cccCCCCCCee-EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEE
Q 016458          200 EFQSGHTADVL-SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (389)
Q Consensus       200 ~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (389)
                      ..    ...+. +..+.  .+..+++++.++.|+.||.+++ +.+..+..+.    ...++|++..+++++.|+.|+.||
T Consensus        78 ~~----~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG-~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d  146 (369)
T 2hz6_A           78 TI----PELVQASPCRS--SDGILYMGKKQDIWYVIDLLTG-EKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYD  146 (369)
T ss_dssp             CH----HHHHTTCSCC-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCC
T ss_pred             cC----ccccccCceEe--cCCEEEEEeCCCEEEEEECCCC-cEEEEecCCC----cccccccCCEEEEEecCCEEEEEE
Confidence            10    00110 00111  3356778888999999999987 5554544332    245567888999999999999999


Q ss_pred             CCCCceeeEeeccCCCCCCCCeeEEEeCCCC---CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCee-EEEECCC
Q 016458          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISG---RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSAD  354 (389)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~  354 (389)
                      .++++.+..+....       ....+++++.   ..+++++.+|.|+.||..+++.+....     ...++. ...++++
T Consensus       147 ~~tG~~~W~~~~~~-------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-----~~~pv~~~~~~~~d  214 (369)
T 2hz6_A          147 TKTRELRWNATYFD-------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-----YASPVVAFYVWQRE  214 (369)
T ss_dssp             SSSSSCCCEEEEEE-------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-----CSSCEEEEEECTTS
T ss_pred             CCCCCEEEeEeccc-------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-----CCCceEEEEEecCC
Confidence            99998776654321       1223333332   467778899999999999999988873     233443 3455666


Q ss_pred             CCeEEe--eeCCCeeEEeecceecccCc
Q 016458          355 GSALCT--GSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       355 ~~~l~~--~~~dg~i~i~~~~W~~~~~~  380 (389)
                      |...+.  ...++.++.    ++..+|+
T Consensus       215 g~~~v~~~~~~~~~l~~----ld~~tG~  238 (369)
T 2hz6_A          215 GLRKVMHINVAVETLRY----LTFMSGE  238 (369)
T ss_dssp             SCEEECCEEEEHHHHHH----HHHHHHH
T ss_pred             ceEeccceeecccceee----eehhcCC
Confidence            643211  011344555    6666665

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.44  E-value=1.1e-11  Score=105.44  Aligned_cols=243  Identities=13%  Similarity=0.078  Sum_probs=153.0

Q ss_pred             CcEEEEEECCCCcEEEEec--CCCcEEEEeCCCCCCCCCCCcc-eeeecccccceEEEEEeeCCCcEEEEeeC-----CC
Q 016458          110 AWVMTCAFSPTGQSVACGG--LDSVCSIFNLNSPTDKDGNLPV-SRMLSGHKGYVSCCQYVPDEDTHLITSSG-----DQ  181 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg  181 (389)
                      ..+..++++++|+.+++..  .++.++||.+..+...  .++. ......+-..+..+++.+++ +++++-..     ++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~--~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI--PFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE--ESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee--cCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCC
Confidence            5789999999999988853  2343566665432100  0000 01122355678999999986 55554433     57


Q ss_pred             eEEEEeCCCCeeEEEecCc-ccCCCCCCeeEEEeeCCCCcEEEEee---CCCceEEEeCCCCCcceeEEeeeccceE-EE
Q 016458          182 TCVLWDITTGLRTSVFGGE-FQSGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAVRTFHGHEGDVN-TV  256 (389)
Q Consensus       182 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~i~-~~  256 (389)
                      .|.+||+.+++....+... ....+...+..+++++.++..+++..   .++.|.+||+.+. +..+.+..|..... ..
T Consensus        94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIAPEDI  172 (343)
T ss_dssp             EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTSCCSC
T ss_pred             eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecCCCccccccc
Confidence            8999999999877666321 11123345789999984555556655   6789999999866 44444433322110 14


Q ss_pred             EEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC-cEEEEEccc---ce--
Q 016458          257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLL---AK--  330 (389)
Q Consensus       257 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~---~~--  330 (389)
                      .+.+++..+.+.+.+|.+..|..                   .+..++|+|+|+.|+++..++ .++.++...   +.  
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~~~-------------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~  233 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRPHL-------------------GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLT  233 (343)
T ss_dssp             CCEETTEECBEECTTSCEECCCC-------------------CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCC
T ss_pred             ceeECCEEEEeccCCCceeceec-------------------ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCC
Confidence            45557777777777877755531                   267899999999888887766 455554321   00  


Q ss_pred             ---EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcc
Q 016458          331 ---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       331 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~  381 (389)
                         ....+..  .++.+....++++++|.++++...++.|.+    |+..+|++
T Consensus       234 ~~~~~~~~~~--~g~~g~pdgia~d~~G~l~va~~~~~~V~~----~d~~~G~~  281 (343)
T 2qe8_A          234 DAELGSKIER--YSEKPICDGISIDKDHNIYVGDLAHSAIGV----ITSADRAY  281 (343)
T ss_dssp             HHHHHTTCEE--EEECCSCSCEEECTTCCEEEEEGGGTEEEE----EETTTTEE
T ss_pred             hhhhhcceEe--cccCCCCceEEECCCCCEEEEccCCCeEEE----EECCCCCE
Confidence               0000000  123345678999999999999888999999    99856654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.44  E-value=3.9e-12  Score=107.59  Aligned_cols=263  Identities=16%  Similarity=0.118  Sum_probs=164.1

Q ss_pred             EEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcce
Q 016458           72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS  151 (389)
Q Consensus        72 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  151 (389)
                      +.....++ .|..++.++.|..|| .+++.......+...+.++...+++. +.+++.+  +..+|... .       ..
T Consensus        24 ~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~~g-~-------~~   90 (330)
T 3hxj_A           24 SPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINPDG-T-------EK   90 (330)
T ss_dssp             CCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECCCG-G-------GG
T ss_pred             CceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECCCC-c-------EE
Confidence            44454555 566777888899999 88887666555555567777777765 4445544  77777532 2       11


Q ss_pred             eeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCce
Q 016458          152 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA  231 (389)
Q Consensus       152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  231 (389)
                      ..............+. +  ..+..++.++.|..+|.. +.......     .....+.++...+ ++. +..++.++.|
T Consensus        91 ~~~~~~~~~~~~~~~~-~--~~l~v~t~~~~l~~~d~~-g~~~~~~~-----~~~~~~~~~~~~~-~g~-l~vgt~~~~l  159 (330)
T 3hxj_A           91 WRFDTKKAIVSDFTIF-E--DILYVTSMDGHLYAINTD-GTEKWRFK-----TKKAIYATPIVSE-DGT-IYVGSNDNYL  159 (330)
T ss_dssp             GGSCC-----CCEEEE-T--TEEEEECTTSEEEEECTT-SCEEEEEE-----CSSCCCSCCEECT-TSC-EEEECTTSEE
T ss_pred             EEEECCCCcccCceEE-C--CEEEEEecCCEEEEEcCC-CCEEEEEc-----CCCceeeeeEEcC-CCE-EEEEcCCCEE
Confidence            1111111111222222 3  457788889999999998 76665552     2333455556654 444 5667778999


Q ss_pred             EEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCE
Q 016458          232 RLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL  311 (389)
Q Consensus       232 ~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  311 (389)
                      ..+|.. + .....+......+.++...+++.+++ ++  +.|..+| .+++.........     ..+.++...++|. 
T Consensus       160 ~~~d~~-g-~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~-----~~~~~~~~~~~g~-  227 (330)
T 3hxj_A          160 YAINPD-G-TEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGY-----WTVTRPAISEDGT-  227 (330)
T ss_dssp             EEECTT-S-CEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSS-----CCCSCCEECTTSC-
T ss_pred             EEECCC-C-CEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCC-----cceeceEECCCCe-
Confidence            999988 4 55555554555677777877777544 44  7899999 6776665554322     2377788888875 


Q ss_pred             EEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcc
Q 016458          312 LFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       312 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~  381 (389)
                      |.+++.++.|..+|. +++.+..+.    .....+.++.+.+++ .|..++.+|.+..    ++. +|+.
T Consensus       228 l~v~t~~~gl~~~~~-~g~~~~~~~----~~~~~~~~~~~~~~g-~l~v~t~~ggl~~----~d~-~g~~  286 (330)
T 3hxj_A          228 IYVTSLDGHLYAINP-DGTEKWRFK----TGKRIESSPVIGNTD-TIYFGSYDGHLYA----INP-DGTE  286 (330)
T ss_dssp             EEEEETTTEEEEECT-TSCEEEEEE----CSSCCCSCCEECTTS-CEEEECTTCEEEE----ECT-TSCE
T ss_pred             EEEEcCCCeEEEECC-CCCEeEEee----CCCCccccceEcCCC-eEEEecCCCCEEE----ECC-CCcE
Confidence            555667788888884 566665552    233334456666666 4667777878887    775 4543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.37  E-value=2.1e-10  Score=101.17  Aligned_cols=275  Identities=11%  Similarity=0.029  Sum_probs=174.5

Q ss_pred             EEEEecCCcEEEEeCCCCCeeEEEeeC---------------------------------------CCcEEEEEECC---
Q 016458           82 IVSASQDGRLIVWNALTSQKTHAIKLP---------------------------------------CAWVMTCAFSP---  119 (389)
Q Consensus        82 l~~~~~dg~v~iw~~~~~~~~~~~~~~---------------------------------------~~~v~~~~~~~---  119 (389)
                      |.+|+..|.++|+-+.+++.+..+...                                       .+.......|.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            667888899999988888777666321                                       01112233443   


Q ss_pred             --CCcEEEEecC-CCcEEEEeCCCCCCCCCCCcceeeecc-cccceEEEEE-e-eCCCcEEEEee---------------
Q 016458          120 --TGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQY-V-PDEDTHLITSS---------------  178 (389)
Q Consensus       120 --~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~~l~~~~---------------  178 (389)
                        ||+++++... ++.|.+.|+.+.+       +...+.- ....+..+++ . |++ .++++++               
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~-------~~~ii~ip~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~  169 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMK-------CDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMED  169 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTE-------EEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTC
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCce-------EeeEEeCCCCCCCcceeeeecCCC-cEEEEecccccccCCCCccccc
Confidence              7788776654 5679999998744       3332221 1234667777 4 787 4566553               


Q ss_pred             ---CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC--------------------------
Q 016458          179 ---GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--------------------------  229 (389)
Q Consensus       179 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------------------------  229 (389)
                         .++.+.+.|..+.+....+..     . .....++++| +++++++++.+.                          
T Consensus       170 ~~~~~~~vtvID~~t~~v~~qI~V-----g-g~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~  242 (595)
T 1fwx_A          170 VANYVNVFTAVDADKWEVAWQVLV-----S-GNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE  242 (595)
T ss_dssp             GGGEEEEEEEEETTTTEEEEEEEE-----S-SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred             ccccCceEEEEECCCCeEEEEEEe-----C-CCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence               356899999999988888732     1 1345667888 666666666442                          


Q ss_pred             ------------ceEEEeCCCCC-cc-eeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCc-----------
Q 016458          230 ------------TARLWDTRVAS-RA-VRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGH-----------  283 (389)
Q Consensus       230 ------------~i~i~d~~~~~-~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-----------  283 (389)
                                  .|.+.|.++.. .. +..+. -.....++.++|||+++++++ .+..|.++|+.+.+           
T Consensus       243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~  321 (595)
T 1fwx_A          243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS  321 (595)
T ss_dssp             HHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred             EeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence                        47777777621 23 33443 234568899999999887666 67899999998643           


Q ss_pred             -eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc----------ceEEEeecCcCC-CCCCCeeEEEE
Q 016458          284 -QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL----------AKVVLNLGSLQN-SHEGRITCLGL  351 (389)
Q Consensus       284 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~-~~~~~v~~~~~  351 (389)
                       ........      .....++|+|+|....+...|+.|.+||+..          .+.+..+..... +|...-.++.+
T Consensus       322 ~v~~~v~vG------~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~  395 (595)
T 1fwx_A          322 AVVAEPELG------LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETL  395 (595)
T ss_dssp             GEEECCBCC------SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTST
T ss_pred             ceEEEcCCC------CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEe
Confidence             11222111      2368899999994344456789999999987          556666632111 22222233456


Q ss_pred             CCCCCeEEeeeC---CCee----------EEeecceecccCccc
Q 016458          352 SADGSALCTGSW---DTNL----------KVNLGFWRVQEGALS  382 (389)
Q Consensus       352 ~~~~~~l~~~~~---dg~i----------~i~~~~W~~~~~~~~  382 (389)
                      +|||++|+++..   |..+          .+    .|+..+++.
T Consensus       396 ~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql----~dis~~~m~  435 (595)
T 1fwx_A          396 DATNDWLVCLSKFSKDRFLNVGPLKPENDQL----IDISGDKMV  435 (595)
T ss_dssp             TCCSSEEEEEESCCTTSSCCCCSSCCEEEEE----EECSSSSCE
T ss_pred             CCCCCEEEEcCCCCccccccCCCCCCCcceE----EEcCCCcEE
Confidence            899999998764   3332          56    788766653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.34  E-value=1.1e-08  Score=83.51  Aligned_cols=237  Identities=7%  Similarity=-0.075  Sum_probs=145.5

Q ss_pred             cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc
Q 016458          122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (389)
Q Consensus       122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  201 (389)
                      .+|+.+.. +.|+.++++.....  .......+......+..++|.++++.++++-..++.|..+++.........    
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~--~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~----   74 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMK--KTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII----   74 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBC--GGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE----
T ss_pred             cEEEEEcC-CeEEEEEecCcccc--cccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE----
Confidence            34555443 47888888763311  000011122223457889999976566667777899999999876544333    


Q ss_pred             cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec---CCeEEEEE
Q 016458          202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFD  278 (389)
Q Consensus       202 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d  278 (389)
                       .........+++++.++.++++....+.|.++++... ...............++++|++..|+.+..   .+.|..++
T Consensus        75 -~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~  152 (267)
T 1npe_A           75 -RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT-QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (267)
T ss_dssp             -CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             -ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC-CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence             2223467899999855666666666789999998743 221122222245789999997666655543   46888888


Q ss_pred             CCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCe
Q 016458          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA  357 (389)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  357 (389)
                      +... ....+...    .......+++++++..|+.+. ..+.|.++|.........+    .. ......++.. ++.+
T Consensus       153 ~dg~-~~~~~~~~----~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~----~~-~~~P~gi~~d-~~~l  221 (267)
T 1npe_A          153 MDGT-NRRILAQD----NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL----EG-LQYPFAVTSY-GKNL  221 (267)
T ss_dssp             TTSC-CCEEEECT----TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE----EC-CCSEEEEEEE-TTEE
T ss_pred             cCCC-CcEEEEEC----CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe----cC-CCCceEEEEe-CCEE
Confidence            7643 33322211    112378999999887766655 4578999998765443333    11 2234567764 3444


Q ss_pred             EEeeeCCCeeEEeecceecccCccc
Q 016458          358 LCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       358 l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      +++....+.|.+    .+..+|+..
T Consensus       222 yva~~~~~~v~~----~d~~~g~~~  242 (267)
T 1npe_A          222 YYTDWKTNSVIA----MDLAISKEM  242 (267)
T ss_dssp             EEEETTTTEEEE----EETTTTEEE
T ss_pred             EEEECCCCeEEE----EeCCCCCce
Confidence            444445688988    898887643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.32  E-value=1.1e-09  Score=86.39  Aligned_cols=191  Identities=12%  Similarity=0.083  Sum_probs=132.1

Q ss_pred             ceEEEEEeeCCCcEEEEeeCCC--eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCC
Q 016458          160 YVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  237 (389)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  237 (389)
                      ....+.|+ ++ .++.+.+.+|  .|+++|+.+++.......    .....-..++..  ++.+.+..-.++.+.+||..
T Consensus        44 ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l----~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~  115 (262)
T 3nol_A           44 FTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIEL----GKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIR  115 (262)
T ss_dssp             EEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEEESSSSEEEEEETT
T ss_pred             ccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEec----CCccceeEEEEe--CCEEEEEEeeCCEEEEEECc
Confidence            34778887 54 6777777766  899999999999888732    111112334544  45666666678999999999


Q ss_pred             CCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec
Q 016458          238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (389)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (389)
                      +. +.+.++....   ....++++++.|+.+..++.|.++|..+.+....+...........++.+.|. +|+..+..-.
T Consensus       116 t~-~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~  190 (262)
T 3nol_A          116 NL-RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ  190 (262)
T ss_dssp             TC-CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             cC-cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence            87 6777766422   22334457777877777889999999999988887664322222235667776 6765554446


Q ss_pred             CCcEEEEEcccceEEEeecCc--C------CCCCCCeeEEEECCCCCeEEeeeC
Q 016458          318 NGDCYVWDTLLAKVVLNLGSL--Q------NSHEGRITCLGLSADGSALCTGSW  363 (389)
Q Consensus       318 dg~i~i~d~~~~~~~~~~~~~--~------~~~~~~v~~~~~~~~~~~l~~~~~  363 (389)
                      ++.|.+.|..+++.+..+...  .      .......+.|||+|+++.|...+.
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            789999999999998887531  0      011246689999998887777664

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.31  E-value=1.9e-09  Score=86.35  Aligned_cols=205  Identities=8%  Similarity=0.048  Sum_probs=140.5

Q ss_pred             ceEEEEEeeCCCcEEEEeeC--CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCC
Q 016458          160 YVSCCQYVPDEDTHLITSSG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  237 (389)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  237 (389)
                      ....+.|++++ .++++.+.  ++.|.++|+.+++....+..    ........+++.  ++.+.++.-.++.+.++|..
T Consensus        22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l----~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~   94 (266)
T 2iwa_A           22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKM----DDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR   94 (266)
T ss_dssp             CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred             CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEec----CCCcceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence            35789999875 55555443  68999999999999888742    122233455665  44666666678999999998


Q ss_pred             CCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec
Q 016458          238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (389)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (389)
                      +. +.+..+.....  ....+++|++.++++..++.|.++|..+.+....+...........++.+.|. +|...+....
T Consensus        95 t~-~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~  170 (266)
T 2iwa_A           95 TL-SNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ  170 (266)
T ss_dssp             TT-EEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             CC-cEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC
Confidence            77 66666653211  22446668888887778899999999998888887654322222236788887 6754444445


Q ss_pred             CCcEEEEEcccceEEEeecCcC-------C--CCCCCeeEEEECCCCCe-EEeeeCCCeeEEeecceecccC
Q 016458          318 NGDCYVWDTLLAKVVLNLGSLQ-------N--SHEGRITCLGLSADGSA-LCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       318 dg~i~i~d~~~~~~~~~~~~~~-------~--~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      ++.|.+.|..+++.+..+....       .  ........|+|+|+++. ++++...+.+.+    -++.+.
T Consensus       171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~----i~l~~~  238 (266)
T 2iwa_A          171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE----IKLHLV  238 (266)
T ss_dssp             SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE----EEEEEC
T ss_pred             CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE----EEEecc
Confidence            7899999999999988885310       0  01135689999998765 455556788877    666554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.31  E-value=1.5e-09  Score=100.31  Aligned_cols=282  Identities=14%  Similarity=0.134  Sum_probs=174.8

Q ss_pred             CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc----------E-EEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW----------V-MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (389)
Q Consensus        79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (389)
                      +..|++++.++.|..+|..+|+.+..+......          + ..+++  .+..+++++.|+.+..+|..+++     
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~-----  138 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGK-----  138 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCC-----
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCC-----
Confidence            457778888899999999999998887643211          0 11122  35678888889999999998865     


Q ss_pred             Ccceeeeccc----ccceEEEEEeeCCCcEEEEeeC------CCeEEEEeCCCCeeEEEecCcccCCC------------
Q 016458          148 LPVSRMLSGH----KGYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQSGH------------  205 (389)
Q Consensus       148 ~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~------------  205 (389)
                        ..-.....    ...+.+--...++  .++.+..      +|.|..+|..+++.+..+........            
T Consensus       139 --~~W~~~~~~~~~~~~~~~~P~v~~~--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~  214 (668)
T 1kv9_A          139 --AIWSQQTTDPAKPYSITGAPRVVKG--KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAA  214 (668)
T ss_dssp             --EEEEEECSCTTSSCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred             --EeeeeccCCCCCcceecCCCEEECC--EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccccccc
Confidence              22111110    0111110011132  4555443      58999999999999887742100000            


Q ss_pred             --------------CCCeeEEEeeCCCCcEEEEeeCCC-------------------ceEEEeCCCCCcceeEEee--ec
Q 016458          206 --------------TADVLSVSISGSNSRMFVSGSCDS-------------------TARLWDTRVASRAVRTFHG--HE  250 (389)
Q Consensus       206 --------------~~~v~~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~--~~  250 (389)
                                    ......+++.| ..++++.++.++                   .|..+|.+++ +.+-.+..  |.
T Consensus       215 ~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG-~~~W~~~~~~~~  292 (668)
T 1kv9_A          215 KTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG-KLAWHYQVTPGD  292 (668)
T ss_dssp             TTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-CEEEEEESSTTC
T ss_pred             ccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC-ceeeEeecCCCc
Confidence                          01112467777 556777777665                   3899999987 55444432  21


Q ss_pred             -------cceEEEEEecCCC---EEEEEecCCeEEEEECCCCceeeEeeccCCC-------CCC----------------
Q 016458          251 -------GDVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------NEI----------------  297 (389)
Q Consensus       251 -------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~----------------  297 (389)
                             .+.....+..+|+   .++.++.+|.++++|..+++.+.........       ...                
T Consensus       293 ~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~  372 (668)
T 1kv9_A          293 SWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIV  372 (668)
T ss_dssp             CSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEE
T ss_pred             cccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeE
Confidence                   2233333334665   6889999999999999999987443221100       000                


Q ss_pred             --------CCeeEEEeCCCCCEEEEEe------------------------------------cCCcEEEEEcccceEEE
Q 016458          298 --------PHVTSIAFSISGRLLFAGY------------------------------------SNGDCYVWDTLLAKVVL  333 (389)
Q Consensus       298 --------~~i~~~~~~~~~~~l~~~~------------------------------------~dg~i~i~d~~~~~~~~  333 (389)
                              ..-..++++|+...+++..                                    .+|.|..||+.+++.+.
T Consensus       373 ~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W  452 (668)
T 1kv9_A          373 MWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAW  452 (668)
T ss_dssp             ESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEE
T ss_pred             ECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEE
Confidence                    0012367788777666521                                    23789999999999988


Q ss_pred             eecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       334 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      ....     ..+.....+...+.++++++.||.++.    ||..+|++.
T Consensus       453 ~~~~-----~~~~~~~~~~t~gg~vf~g~~dg~l~a----~d~~tG~~l  492 (668)
T 1kv9_A          453 KVPY-----PTHWNGGTLSTAGNLVFQGTAAGQMHA----YSADKGEAL  492 (668)
T ss_dssp             EEEE-----SSSCCCCEEEETTTEEEEECTTSEEEE----EETTTCCEE
T ss_pred             EccC-----CCCCcCceeEeCCCEEEEECCcccchh----hhhhcChhh
Confidence            7742     122333333345778889999999999    999999865

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.29  E-value=9.9e-09  Score=87.50  Aligned_cols=227  Identities=12%  Similarity=0.041  Sum_probs=141.8

Q ss_pred             CCCCeEEE-EecCCcEEEEeCCCC----CeeEEEe-------eCCCcEEEEEECCCCcEEEEecCC------CcEEEEeC
Q 016458           77 SERNRIVS-ASQDGRLIVWNALTS----QKTHAIK-------LPCAWVMTCAFSPTGQSVACGGLD------SVCSIFNL  138 (389)
Q Consensus        77 ~~~~~l~~-~~~dg~v~iw~~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vw~~  138 (389)
                      +++++|+. +..+++|.++|+.+.    +...++.       ........+...|+| .++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            77776655 556789999998654    4444442       112245667888999 66665444      78999998


Q ss_pred             CCCCCCCCCCcceeeeccc---ccceEEEEEeeCCCcEEEEee-------------------CCCeEEEEeCCCCeeEEE
Q 016458          139 NSPTDKDGNLPVSRMLSGH---KGYVSCCQYVPDEDTHLITSS-------------------GDQTCVLWDITTGLRTSV  196 (389)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~  196 (389)
                      .+.+       +.......   ...-..+.|+|++ +.+++..                   .+..|.+||+.+++....
T Consensus       172 ~T~~-------v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t  243 (462)
T 2ece_A          172 YSFE-------PLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS  243 (462)
T ss_dssp             TTCC-------EEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred             CCCe-------EEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence            8754       44444321   1223457889987 5666663                   478999999999887777


Q ss_pred             ecCcccCCCCCCeeEEEe--eCCCCcEEEEee------CCCceEEEeCCCCC-cceeE--Eeee----------------
Q 016458          197 FGGEFQSGHTADVLSVSI--SGSNSRMFVSGS------CDSTARLWDTRVAS-RAVRT--FHGH----------------  249 (389)
Q Consensus       197 ~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~------~dg~i~i~d~~~~~-~~~~~--~~~~----------------  249 (389)
                      +...   ........+.|  +| +++++++++      .+++|.+|....+. .....  +...                
T Consensus       244 I~vg---~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~  319 (462)
T 2ece_A          244 LTLG---EENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV  319 (462)
T ss_dssp             EESC---TTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred             EecC---CCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence            7321   11233445555  88 555555554      56788776654321 00111  1110                


Q ss_pred             ccceEEEEEecCCCEEEEEe-cCCeEEEEECCCC---ceeeEeeccCC---------CCCCCCeeEEEeCCCCCEEEEEe
Q 016458          250 EGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTG---HQLQVYYQQHG---------ENEIPHVTSIAFSISGRLLFAGY  316 (389)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~---~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~~  316 (389)
                      ......|.++|||++|+++. ..+.|.+||+...   +.+..+.....         ..-......++++|||++|+++.
T Consensus       320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            23467899999999998776 4689999998633   33333332200         00011247899999999999987

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.26  E-value=5.7e-09  Score=94.41  Aligned_cols=284  Identities=13%  Similarity=0.036  Sum_probs=169.8

Q ss_pred             CCeEEEEec-CCcEEEEeC-CCCCeeEEEeeCCCc-E----------EEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458           79 RNRIVSASQ-DGRLIVWNA-LTSQKTHAIKLPCAW-V----------MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (389)
Q Consensus        79 ~~~l~~~~~-dg~v~iw~~-~~~~~~~~~~~~~~~-v----------~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (389)
                      +..++.++. ++.|.-+|. .+|+.+..+...... +          ..++.  .+..+++++.|+.+..+|..+++.. 
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~-  138 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKIN-  138 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE-
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEE-
Confidence            446777777 889999999 899998877644310 0          11122  3567888888999999999876521 


Q ss_pred             CCCcceeeeccccc--ceEEEEEeeCCCcEEEEeeC------CCeEEEEeCCCCeeEEEecCcccC--------------
Q 016458          146 GNLPVSRMLSGHKG--YVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQS--------------  203 (389)
Q Consensus       146 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~--------------  203 (389)
                          .......+..  .+.+--...++  .++.++.      ++.|..+|..+++.+..+......              
T Consensus       139 ----W~~~~~~~~~~~~~~~~P~v~~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~  212 (571)
T 2ad6_A          139 ----WEVEVCDPKVGSTLTQAPFVAKD--TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP  212 (571)
T ss_dssp             ----EEEECCCGGGTCBCCSCCEEETT--EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             ----EEecCCCCCccceeccCCEEECC--EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccc
Confidence                1111111110  11110011232  4555544      799999999999988876432100              


Q ss_pred             -------------------CCCCCeeEEEeeCCCCcEEEEeeCC----------------CceEEEeCCCCCcceeEEee
Q 016458          204 -------------------GHTADVLSVSISGSNSRMFVSGSCD----------------STARLWDTRVASRAVRTFHG  248 (389)
Q Consensus       204 -------------------~~~~~v~~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~  248 (389)
                                         ........+++.+ ....++.++.+                +.|..+|.+++ +.+-.+..
T Consensus       213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG-~~~W~~~~  290 (571)
T 2ad6_A          213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG-MAKWGYQK  290 (571)
T ss_dssp             GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC-CEEEEEES
T ss_pred             cccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCC-cEEEEecC
Confidence                               0000002355666 34455554432                35889999887 44444432


Q ss_pred             --e--------ccceEEEEEecCCC---EEEEEecCCeEEEEECCCCceeeEeeccCCCC--------CCCCe-------
Q 016458          249 --H--------EGDVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN--------EIPHV-------  300 (389)
Q Consensus       249 --~--------~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--------~~~~i-------  300 (389)
                        |        ..++ -+...++|+   .++.++.+|.+.++|..+++.+..........        ...++       
T Consensus       291 ~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~  369 (571)
T 2ad6_A          291 TPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFAT  369 (571)
T ss_dssp             STTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCC
T ss_pred             CCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCC
Confidence              1        1122 122234674   57788899999999999998877664322000        00001       


Q ss_pred             -------------------eEEEeCCCCCEEEEEe-------------------------------------cCCcEEEE
Q 016458          301 -------------------TSIAFSISGRLLFAGY-------------------------------------SNGDCYVW  324 (389)
Q Consensus       301 -------------------~~~~~~~~~~~l~~~~-------------------------------------~dg~i~i~  324 (389)
                                         ..++++|+..++++..                                     .+|.|..|
T Consensus       370 ~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~  449 (571)
T 2ad6_A          370 RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAF  449 (571)
T ss_dssp             CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEE
T ss_pred             CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEE
Confidence                               3467888877777654                                     24789999


Q ss_pred             EcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          325 DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       325 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      |+.+++.+.....     ...+.+..+...+..++.++.||.++.    ||..+|++..
T Consensus       450 D~~tG~~~W~~~~-----~~~~~~~~~~t~gg~v~~g~~dg~l~a----~D~~tG~~lw  499 (571)
T 2ad6_A          450 DLTTGKAKWTKWE-----KFAAWGGTLYTKGGLVWYATLDGYLKA----LDNKDGKELW  499 (571)
T ss_dssp             CTTTCCEEEEEEE-----SSCCCSBCEEETTTEEEEECTTSEEEE----EETTTCCEEE
T ss_pred             ECCCCCEEEEecC-----CCCccceeEEECCCEEEEEcCCCeEEE----EECCCCCEEE
Confidence            9999998887742     122222222234567778899999999    9999998763

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.25  E-value=1.3e-07  Score=89.66  Aligned_cols=292  Identities=10%  Similarity=0.056  Sum_probs=180.2

Q ss_pred             EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEE-eeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC
Q 016458           70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI-KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL  148 (389)
Q Consensus        70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  148 (389)
                      |.++...+++.+.+ ++.++-|..|+..+++..... ......|.++...+++.+.+....+| +..|+..+..      
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~------  246 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAG-LFLINPKTKE------  246 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTE------
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCe------
Confidence            88888888775444 665545889998776543321 12345688888887777555443344 8888876532      


Q ss_pred             cceeeec-------ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc--ccCCCCCCeeEEEeeCCCC
Q 016458          149 PVSRMLS-------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE--FQSGHTADVLSVSISGSNS  219 (389)
Q Consensus       149 ~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~  219 (389)
                       ......       -....|.++...+++  .+..|+.+ -|.+||..++.........  ........|.++...+ ++
T Consensus       247 -~~~~~~~~~~~~~l~~~~i~~i~~d~~g--~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g  321 (795)
T 4a2l_A          247 -IKNYLHSPSNPKSISSNYIRSLAMDSQN--RLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-QG  321 (795)
T ss_dssp             -EEEECCCTTCTTSCSCSBEEEEEECTTS--CEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-TS
T ss_pred             -EEEeecCCCCccccCCCeEEEEEEcCCC--CEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-Cc
Confidence             111111       123568888888776  35556655 5889998877654432111  0112345789998886 55


Q ss_pred             cEEEEeeCCCceEEEeCCCCCcceeEEee-------eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC
Q 016458          220 RMFVSGSCDSTARLWDTRVASRAVRTFHG-------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH  292 (389)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  292 (389)
                      . |..|+.++-|..|+....  ....+..       ....|.++...++|. |..|+.++-|..||..++..........
T Consensus       322 ~-lWigt~~~Gl~~~~~~~~--~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~  397 (795)
T 4a2l_A          322 G-MWLGTYFGGLNYYHPIRN--RFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQED  397 (795)
T ss_dssp             C-EEEEESSSCEEEECGGGG--SSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC--
T ss_pred             C-EEEEECCCCeEEeCCCcc--cceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCC
Confidence            4 455777778999987643  2222221       234688999888876 5557777789999987654332221110


Q ss_pred             C---CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          293 G---ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       293 ~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      .   ......|.+++..++|+.|.+|+.++-|..||..+++...............|.++...++|.+.+.. .+| +.+
T Consensus       398 ~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~  475 (795)
T 4a2l_A          398 ESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVR  475 (795)
T ss_dssp             ----CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEE
T ss_pred             CcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeE
Confidence            0   01123589999988888677777777899999887764433211111345679999999888755544 444 666


Q ss_pred             eecceecccCcccCc
Q 016458          370 NLGFWRVQEGALSPW  384 (389)
Q Consensus       370 ~~~~W~~~~~~~~~~  384 (389)
                          |+..+++...+
T Consensus       476 ----~~~~~~~~~~~  486 (795)
T 4a2l_A          476 ----FNPEQRSFTTI  486 (795)
T ss_dssp             ----EETTTTEEEEC
T ss_pred             ----EeCCCCeEEEc
Confidence                88777665443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.25  E-value=9e-09  Score=93.09  Aligned_cols=286  Identities=12%  Similarity=0.034  Sum_probs=169.6

Q ss_pred             CCeEEEEec-CCcEEEEeC-CCCCeeEEEeeCCCc-----------EEEEEECCCCcE----EEEecCCCcEEEEeCCCC
Q 016458           79 RNRIVSASQ-DGRLIVWNA-LTSQKTHAIKLPCAW-----------VMTCAFSPTGQS----VACGGLDSVCSIFNLNSP  141 (389)
Q Consensus        79 ~~~l~~~~~-dg~v~iw~~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----l~~~~~dg~i~vw~~~~~  141 (389)
                      +..|++++. ++.|.-+|. .+|+.+-.+......           ...+++.|.+..    +++++.|+.+.-+|..++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            446777777 889999999 899998877654321           122445443444    888888999999999876


Q ss_pred             CCCCCCCcceeeecccc--cceEEEEEeeCCCcEEEEee------CCCeEEEEeCCCCeeEEEecCcccCC---------
Q 016458          142 TDKDGNLPVSRMLSGHK--GYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSG---------  204 (389)
Q Consensus       142 ~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~---------  204 (389)
                      +..     .......+.  ..+.+--...++  .++.++      .+|.|+.+|..+++.+..+.......         
T Consensus       142 ~~~-----W~~~~~~~~~~~~~~ssP~v~~g--~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~  214 (599)
T 1w6s_A          142 ETV-----WKVENSDIKVGSTLTIAPYVVKD--KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFN  214 (599)
T ss_dssp             CEE-----EEEECCCGGGTCBCCSCCEEETT--EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred             CEE-----EeecCCCCCccceeecCCEEECC--EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccc
Confidence            521     111111110  011110011232  455554      38999999999999988774321100         


Q ss_pred             C-----------------------CCCe-eEEEeeCCCCcEEEEeeCC----------------CceEEEeCCCCCccee
Q 016458          205 H-----------------------TADV-LSVSISGSNSRMFVSGSCD----------------STARLWDTRVASRAVR  244 (389)
Q Consensus       205 ~-----------------------~~~v-~~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~  244 (389)
                      .                       ...+ ..+++.+ ...+++.++.+                +.|..+|.+++ +..-
T Consensus       215 ~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG-~~~W  292 (599)
T 1w6s_A          215 IKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG-EAKF  292 (599)
T ss_dssp             TTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC-CEEE
T ss_pred             cccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCC-ceee
Confidence            0                       0000 1345556 45566666554                37889999887 5544


Q ss_pred             EEeeec----------cceEEEEEe-cCC---CEEEEEecCCeEEEEECCCCceeeEeeccCCC--------CCCC----
Q 016458          245 TFHGHE----------GDVNTVKFF-PDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE--------NEIP----  298 (389)
Q Consensus       245 ~~~~~~----------~~i~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~----  298 (389)
                      .++...          .++. +... .+|   ..++.++.+|.+.++|..+++.+.........        ....    
T Consensus       293 ~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~  371 (599)
T 1w6s_A          293 GYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRD  371 (599)
T ss_dssp             EEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEEC
T ss_pred             EeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeec
Confidence            443221          1121 2222 467   46778899999999999999988765432100        0000    


Q ss_pred             ----------------------CeeEEEeCCCCCEEEEEe---------------------------------------c
Q 016458          299 ----------------------HVTSIAFSISGRLLFAGY---------------------------------------S  317 (389)
Q Consensus       299 ----------------------~i~~~~~~~~~~~l~~~~---------------------------------------~  317 (389)
                                            .-..++++|+..++++..                                       .
T Consensus       372 ~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~  451 (599)
T 1w6s_A          372 PEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEG  451 (599)
T ss_dssp             GGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBC
T ss_pred             cccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCC
Confidence                                  012456777766655431                                       3


Q ss_pred             CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          318 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       318 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      .|.|..||+.+++.+......     .+...-.....+.+++.++.||.++.    +|..+|++..
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~-----~~~~~g~~~tagg~vf~gt~dg~l~A----~D~~tG~~lW  508 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMER-----FAVWGGTMATAGDLVFYGTLDGYLKA----RDSDTGDLLW  508 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-----SCCCSBCEEETTTEEEEECTTSEEEE----EETTTCCEEE
T ss_pred             cCeEEEEECCCCCEEeEecCC-----CCccCcceEecCCEEEEECCCCeEEE----EECCCCCEEE
Confidence            478999999999988877421     11111111224567778999999999    9999998653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.24  E-value=5.9e-09  Score=82.34  Aligned_cols=189  Identities=6%  Similarity=-0.016  Sum_probs=133.0

Q ss_pred             eEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC
Q 016458          161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS  240 (389)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  240 (389)
                      ...+.|+.  +.++.+.+.+|.|+++|+.+++....+ .    ........+++.  ++.+++..-.++.+.+||..+. 
T Consensus        57 tqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l----~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl-  126 (268)
T 3nok_A           57 TQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-R----LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPP-  126 (268)
T ss_dssp             EEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-E----CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTT-
T ss_pred             cceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-C----CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcC-
Confidence            46778863  478888888999999999999887775 1    111122335554  5566666677899999999987 


Q ss_pred             cceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCc
Q 016458          241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD  320 (389)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  320 (389)
                      +.+.++.... .-..++  ++++.|+.+..++.|.++|..+.+....+...........++.+.|. +|+..+....++.
T Consensus       127 ~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~  202 (268)
T 3nok_A          127 QRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSD  202 (268)
T ss_dssp             EEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSE
T ss_pred             cEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCe
Confidence            6777776422 223444  57888888878999999999999988887665433333346778876 7754444446779


Q ss_pred             EEEEEcccceEEEeecCc---------CCCCCCCeeEEEECCCCCeEEeeeC
Q 016458          321 CYVWDTLLAKVVLNLGSL---------QNSHEGRITCLGLSADGSALCTGSW  363 (389)
Q Consensus       321 i~i~d~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~  363 (389)
                      |.+.|..+++.+..+...         ........+.|||+|+++.|+..+.
T Consensus       203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            999999999998887532         0112346799999997766665553

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.23  E-value=5.7e-10  Score=98.41  Aligned_cols=238  Identities=11%  Similarity=0.042  Sum_probs=152.4

Q ss_pred             CCCCeEEEEec-CCcEEEEeCCCCCeeEEEeeCC-CcEEEEEE-C-CCCcEEEEec------------------CCCcEE
Q 016458           77 SERNRIVSASQ-DGRLIVWNALTSQKTHAIKLPC-AWVMTCAF-S-PTGQSVACGG------------------LDSVCS  134 (389)
Q Consensus        77 ~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~-~-~~~~~l~~~~------------------~dg~i~  134 (389)
                      +||++|+.... ++.|.+.|+.+.+....+..+. ..+..+++ + |+++++++++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            37777776554 5679999999999888666543 45788887 5 9999998884                  345788


Q ss_pred             EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC---------------------------------
Q 016458          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ---------------------------------  181 (389)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------------------------------  181 (389)
                      +.|.++.+       ....+.--. ....+.++|++ .++++.+.+.                                 
T Consensus       179 vID~~t~~-------v~~qI~Vgg-~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk  249 (595)
T 1fwx_A          179 AVDADKWE-------VAWQVLVSG-NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  249 (595)
T ss_dssp             EEETTTTE-------EEEEEEESS-CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             EEECCCCe-------EEEEEEeCC-CccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence            88888633       333333211 34556788887 4555544321                                 


Q ss_pred             -----eEEEEeCCC--Cee-EEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc-----------c
Q 016458          182 -----TCVLWDITT--GLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-----------A  242 (389)
Q Consensus       182 -----~i~iwd~~~--~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~  242 (389)
                           .|.+.|..+  +.. +..+      .......++.++|++..+++++..+.+|.++|+.+...           .
T Consensus       250 ~~~i~~V~VID~~~~~~~~~~~~I------pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v  323 (595)
T 1fwx_A          250 YQELNGVKVVDGRKEASSLFTRYI------PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV  323 (595)
T ss_dssp             SEEETTEEEEECSGGGCCSSEEEE------EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred             eeEECcEEEEeCcccCCceeEEEE------ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence                 366666665  333 3333      12235678899994444556666789999999985411           1


Q ss_pred             eeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCC----------CceeeEeeccCCCCCCCCeeEEEeCCCCCEE
Q 016458          243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT----------GHQLQVYYQQHGENEIPHVTSIAFSISGRLL  312 (389)
Q Consensus       243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (389)
                      .... .-......++|+|+|...++...|+.|.+||+..          ...+..+..+....|...-..+.++|||++|
T Consensus       324 ~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l  402 (595)
T 1fwx_A          324 VAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL  402 (595)
T ss_dssp             EECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred             EEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEE
Confidence            1122 2234578899999995455666899999999877          4455555554332221112334568999999


Q ss_pred             EEEecC--CcE-----------EEEEcccce
Q 016458          313 FAGYSN--GDC-----------YVWDTLLAK  330 (389)
Q Consensus       313 ~~~~~d--g~i-----------~i~d~~~~~  330 (389)
                      ++...-  .++           .++|+..++
T Consensus       403 ~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          403 VCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             EEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             EEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            987542  233           889986544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.22  E-value=1.3e-07  Score=89.68  Aligned_cols=290  Identities=10%  Similarity=0.055  Sum_probs=180.1

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEee-------CCCcEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-------PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN  139 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~  139 (389)
                      ...|.++...+++.+. .|+.++-+..||..+++.......       ....|.++...++|.+.+. +.+ -|.+|+..
T Consensus       214 ~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~  290 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHEG  290 (795)
T ss_dssp             CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEETT
T ss_pred             CCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcCC
Confidence            4578899888877544 455444488999776554332211       2356999999988876554 445 47888876


Q ss_pred             CCCCCCCCCcceeee-------cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc-cCCCCCCeeE
Q 016458          140 SPTDKDGNLPVSRML-------SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF-QSGHTADVLS  211 (389)
Q Consensus       140 ~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~  211 (389)
                      ...       .....       .-....|.++...++|  .+..|+.++-|..|+..+........... .......|.+
T Consensus       291 ~~~-------~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~  361 (795)
T 4a2l_A          291 TDS-------FASYSSNPVENGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSC  361 (795)
T ss_dssp             TTE-------EEEECCCTTSTTSCSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEE
T ss_pred             CCe-------EEEEecCCCCCCCCCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEE
Confidence            532       11111       1123568888888876  47778888889999876654332211100 0113456888


Q ss_pred             EEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe---------eeccceEEEEEecCCCEEEEEecCCeEEEEECCCC
Q 016458          212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---------GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG  282 (389)
Q Consensus       212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  282 (389)
                      +...+ +++ |..|+.++-|..||..+. . ...+.         .....|.+++..+++..|.+|+.++-|..||..++
T Consensus       362 i~~d~-~g~-lWiGt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~  437 (795)
T 4a2l_A          362 IVEDK-DKN-LWIGTNDGGLNLYNPITQ-R-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG  437 (795)
T ss_dssp             EEECT-TSC-EEEEESSSCEEEECTTTC-C-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred             EEECC-CCC-EEEEECCCCeEEEcCCCC-c-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence            88876 554 455777778999998754 2 22221         11356889998888885777787778999998876


Q ss_pred             ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC--cCCCCCCCeeEEEECCCCCeEEe
Q 016458          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS--LQNSHEGRITCLGLSADGSALCT  360 (389)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~  360 (389)
                      +... +...........|.++...++|++.+.+ . +.+.+||..+++.......  ........|.++..+++|.+.+.
T Consensus       438 ~~~~-~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig  514 (795)
T 4a2l_A          438 QVEN-FNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG  514 (795)
T ss_dssp             CEEE-ECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE
T ss_pred             cEEE-eecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE
Confidence            5433 2221111223358999998888765544 4 4599999887654432210  00123467999999999876654


Q ss_pred             eeCCCeeEEeecceecccCcc
Q 016458          361 GSWDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       361 ~~~dg~i~i~~~~W~~~~~~~  381 (389)
                      . .+ .+..    |+..+++.
T Consensus       515 t-~~-Gl~~----~~~~~~~~  529 (795)
T 4a2l_A          515 G-EE-GLSV----FKQEGLDI  529 (795)
T ss_dssp             E-SS-CEEE----EEEETTEE
T ss_pred             e-CC-ceEE----EeCCCCeE
Confidence            4 44 4666    77766554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.22  E-value=4.3e-08  Score=78.48  Aligned_cols=210  Identities=11%  Similarity=0.094  Sum_probs=136.0

Q ss_pred             eeEEEeeCC-CcEEEEEECCCCcEEEEecC--CCcEEEEeCCCCCCCCCCCcceeeecc-cccceEEEEEeeCCCcEEEE
Q 016458          101 KTHAIKLPC-AWVMTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLIT  176 (389)
Q Consensus       101 ~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~  176 (389)
                      .+.++.... .....++|++++.++++.+.  ++.|.++|+.+++       ....+.- .......+++.  ++.+.++
T Consensus        11 vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~-------v~~~i~l~~~~fgeGi~~~--g~~lyv~   81 (266)
T 2iwa_A           11 VLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK-------VENIHKMDDSYFGEGLTLL--NEKLYQV   81 (266)
T ss_dssp             EEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC-------EEEEEECCTTCCEEEEEEE--TTEEEEE
T ss_pred             EEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC-------EEEEEecCCCcceEEEEEe--CCEEEEE
Confidence            444554333 23688999998755555443  6799999999865       3333321 11122234444  4466667


Q ss_pred             eeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec-----c
Q 016458          177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-----G  251 (389)
Q Consensus       177 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~  251 (389)
                      .-.++.+.++|..+.+.+..+..    + ...-..  ++++...+++ +..++.|.++|..+. +....+.-..     .
T Consensus        82 t~~~~~v~viD~~t~~v~~~i~~----g-~~~g~g--lt~Dg~~l~v-s~gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~  152 (266)
T 2iwa_A           82 VWLKNIGFIYDRRTLSNIKNFTH----Q-MKDGWG--LATDGKILYG-SDGTSILYEIDPHTF-KLIKKHNVKYNGHRVI  152 (266)
T ss_dssp             ETTCSEEEEEETTTTEEEEEEEC----C-SSSCCE--EEECSSSEEE-ECSSSEEEEECTTTC-CEEEEEECEETTEECC
T ss_pred             EecCCEEEEEECCCCcEEEEEEC----C-CCCeEE--EEECCCEEEE-ECCCCeEEEEECCCC-cEEEEEEECCCCcccc
Confidence            77789999999999999888842    1 112233  4443444554 456889999999887 5555554221     1


Q ss_pred             ceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC--------CCCCCCCeeEEEeCCCCCEEEE-EecCCcEE
Q 016458          252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLLFA-GYSNGDCY  322 (389)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~  322 (389)
                      .++.+.|. ++...+....++.|.+.|..+++....+....        ........+.++|+|+++.+++ +...+.+.
T Consensus       153 ~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~  231 (266)
T 2iwa_A          153 RLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLF  231 (266)
T ss_dssp             CEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred             cceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEE
Confidence            36678888 67555555568899999999999988886531        0111124689999999875555 44677888


Q ss_pred             EEEcccc
Q 016458          323 VWDTLLA  329 (389)
Q Consensus       323 i~d~~~~  329 (389)
                      +.++...
T Consensus       232 ~i~l~~~  238 (266)
T 2iwa_A          232 EIKLHLV  238 (266)
T ss_dssp             EEEEEEC
T ss_pred             EEEEecc
Confidence            8887654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.22  E-value=8.4e-09  Score=95.30  Aligned_cols=243  Identities=12%  Similarity=0.114  Sum_probs=152.4

Q ss_pred             CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc-EEEEEECC--CCcEEEEecC------CCcEEEEeCCCCCCCCCCCc
Q 016458           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-VMTCAFSP--TGQSVACGGL------DSVCSIFNLNSPTDKDGNLP  149 (389)
Q Consensus        79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~------dg~i~vw~~~~~~~~~~~~~  149 (389)
                      +..++.++.|+.|..+|..+|+.+..+...... ...+.-+|  .+..++++..      +|.|..+|..+++.      
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~------  190 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKL------  190 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE------
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcE------
Confidence            457888888999999999999999887653210 00011111  1334555432      58899999887652      


Q ss_pred             ceeeec-------------------------------ccccceEEEEEeeCCCcEEEEeeCCC-----------------
Q 016458          150 VSRMLS-------------------------------GHKGYVSCCQYVPDEDTHLITSSGDQ-----------------  181 (389)
Q Consensus       150 ~~~~~~-------------------------------~~~~~v~~~~~~~~~~~~l~~~~~dg-----------------  181 (389)
                       .-.+.                               ++......+++.+.. .+++.++.++                 
T Consensus       191 -~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~  268 (668)
T 1kv9_A          191 -AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLY  268 (668)
T ss_dssp             -EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred             -EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCcee
Confidence             11110                               011111246777775 5677777665                 


Q ss_pred             --eEEEEeCCCCeeEEEecCcccCC----CCCCeeEEEeeCCCCc---EEEEeeCCCceEEEeCCCCCcceeEEeeec--
Q 016458          182 --TCVLWDITTGLRTSVFGGEFQSG----HTADVLSVSISGSNSR---MFVSGSCDSTARLWDTRVASRAVRTFHGHE--  250 (389)
Q Consensus       182 --~i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--  250 (389)
                        .|..+|..+++....+.......    ...+.....+.. +++   .++.++.+|.++++|..++ +.+.......  
T Consensus       269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~  346 (668)
T 1kv9_A          269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRTNG-KLISAEKFGKVT  346 (668)
T ss_dssp             TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCC
T ss_pred             eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEECCCC-CEeccccccccc
Confidence              49999999999988874321000    012222222222 333   6889999999999999887 4442221110  


Q ss_pred             ----------cc------------------------eEEEEEecCCCEEEEEe---------------------------
Q 016458          251 ----------GD------------------------VNTVKFFPDGNRFGTGS---------------------------  269 (389)
Q Consensus       251 ----------~~------------------------i~~~~~~~~~~~l~~~~---------------------------  269 (389)
                                .+                        -..++++|+..++++..                           
T Consensus       347 w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  426 (668)
T 1kv9_A          347 WAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFA  426 (668)
T ss_dssp             SEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGG
T ss_pred             cccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccc
Confidence                      00                        01267788766665421                           


Q ss_pred             ---------cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC
Q 016458          270 ---------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS  337 (389)
Q Consensus       270 ---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  337 (389)
                               .+|.|..||+.+++..........      .....+...+.++++++.||.++.||..+++.+..+..
T Consensus       427 ~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~------~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          427 DATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH------WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             GCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCCCccceEEEEeCCCCcEEEEccCCCC------CcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence                     248899999999998877654322      22333445678899999999999999999999988853

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.21  E-value=3.9e-07  Score=75.88  Aligned_cols=247  Identities=11%  Similarity=0.054  Sum_probs=144.8

Q ss_pred             cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCC--cE
Q 016458           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS--VC  133 (389)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i  133 (389)
                      ..+....|... .....++|+++++++++-..++.|..||... .....+.. ...+..+++.++++++++.....  .|
T Consensus        21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v   97 (306)
T 2p4o_A           21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPV   97 (306)
T ss_dssp             CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceE
Confidence            34555556443 4578999999998777776889999999764 44333333 35688999999999666554332  35


Q ss_pred             EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee-EEEecCc----ccCCCCCC
Q 016458          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGE----FQSGHTAD  208 (389)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~----~~~~~~~~  208 (389)
                      ..++..++.     ........ .......++..+.+ ..+++...++.|.++|...+.. +......    .....-..
T Consensus        98 ~~~d~~~g~-----~~~~~~~~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (306)
T 2p4o_A           98 VSLVKSDGT-----VETLLTLP-DAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  170 (306)
T ss_dssp             EEEECTTSC-----EEEEEECT-TCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             EEEcCCCCe-----EEEEEeCC-CccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence            556655432     11111111 11223344444433 4455544688999999876532 2111100    00111123


Q ss_pred             eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc--eeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceee
Q 016458          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA--VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ  286 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  286 (389)
                      ...+  +++++.++++-...+.|..||+......  ...+. .......++++++|+++++....+.|.++|.. ++...
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~  246 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI  246 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEE
Confidence            4455  6634456666667789999998742111  12221 12346779999999887777778899999975 55432


Q ss_pred             EeeccCCCCCCCCeeEEEeC---CCCCEEEEEecCC
Q 016458          287 VYYQQHGENEIPHVTSIAFS---ISGRLLFAGYSNG  319 (389)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg  319 (389)
                      ......   .....++++|.   |+++.|++++..+
T Consensus       247 ~~~~~~---~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          247 IAQAEQ---GVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EECGGG---TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             Eeeccc---ccCCceEEEEecccCCCCEEEEECCCC
Confidence            211111   11247899998   8888887776544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.19  E-value=2.2e-08  Score=78.44  Aligned_cols=192  Identities=12%  Similarity=0.064  Sum_probs=131.9

Q ss_pred             cceEEEEEeeCCCcEEEEeeCCC--eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeC
Q 016458          159 GYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT  236 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  236 (389)
                      .....+.|++  +.++.+.+.+|  .|+.+|+.+++.......    .....-..++..  ++.+++..-.++.+.+||.
T Consensus        21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l----~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~   92 (243)
T 3mbr_X           21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEV----PPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDL   92 (243)
T ss_dssp             CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred             cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeC----CCCcceeEEEEe--CCEEEEEEeeCCEEEEEEC
Confidence            3456888876  36666766654  899999999999888732    111122334444  5566667777899999999


Q ss_pred             CCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458          237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (389)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (389)
                      .+. +.+.++..... -..++  ++++.|+.+..++.|.++|..+.+....+...........++.+.+. +|+..+..-
T Consensus        93 ~tl-~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw  167 (243)
T 3mbr_X           93 ATL-TPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW  167 (243)
T ss_dssp             TTT-EEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             CcC-cEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence            987 67777664322 23444  56777777777899999999999888887664432222346677765 666554444


Q ss_pred             cCCcEEEEEcccceEEEeecCcC---------CCCCCCeeEEEECCCCCeEEeeeC
Q 016458          317 SNGDCYVWDTLLAKVVLNLGSLQ---------NSHEGRITCLGLSADGSALCTGSW  363 (389)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~  363 (389)
                      .+..|.+.|..+++.+..+....         .......+.|+++|+++.|...+.
T Consensus       168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            67799999999999988875321         012246789999998777766654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.19  E-value=8.9e-08  Score=80.44  Aligned_cols=242  Identities=14%  Similarity=0.071  Sum_probs=147.4

Q ss_pred             CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeC--------------------CCcEEEEEECC-CCcEEEE
Q 016458           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP--------------------CAWVMTCAFSP-TGQSVAC  126 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~--------------------~~~v~~~~~~~-~~~~l~~  126 (389)
                      ....+++|++++++++++..++.|..|+..++... .+...                    ...+..+++.+ ++++++ 
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v-   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI-   96 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE-
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE-
Confidence            34667899999987888888999999997765433 22211                    12478899998 565444 


Q ss_pred             ecCCCcEEEEeCCCCCCCCCCCccee-eecc-cccceEEEEEee-CCCcEEEEeeC-----------------CCeEEEE
Q 016458          127 GGLDSVCSIFNLNSPTDKDGNLPVSR-MLSG-HKGYVSCCQYVP-DEDTHLITSSG-----------------DQTCVLW  186 (389)
Q Consensus       127 ~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~-~~~~v~~~~~~~-~~~~~l~~~~~-----------------dg~i~iw  186 (389)
                      +...+.|..++..++.     ..... ...+ .......+++.+ ++ +++++...                 ++.|..+
T Consensus        97 ~d~~~~i~~~d~~~g~-----~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  170 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGH-----ATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY  170 (322)
T ss_dssp             EETTTEEEEECTTCEE-----CEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred             EECCCCEEEEeCCCCE-----EEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEE
Confidence            4444457888766422     00111 1111 113467899999 77 55554322                 3779999


Q ss_pred             eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc-EEEEeeCCCceEEEeCCCCC-cceeEEeeeccceEEEEEecCCCE
Q 016458          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNR  264 (389)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~  264 (389)
                      |..++......      ........++++| +++ ++++-+..+.|..|++.... .....+....+ ...+++.++|++
T Consensus       171 d~~~~~~~~~~------~~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l  242 (322)
T 2fp8_A          171 DPSTKETTLLL------KELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHF  242 (322)
T ss_dssp             ETTTTEEEEEE------EEESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCE
T ss_pred             eCCCCEEEEec------cCCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCE
Confidence            98777644332      1123456789998 665 44554567899999987431 11122222223 788999999987


Q ss_pred             EEEEec----------CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458          265 FGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (389)
Q Consensus       265 l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (389)
                      .++...          .+.|..+|.. ++.+..+...... ....++.+++ .+++++++...++.|..+++..
T Consensus       243 ~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~-~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          243 WVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPF-AGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTT-TTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             EEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCC-ccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            666544          4678899864 6666666543221 1223666666 4565555555677899998753

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.19  E-value=5.5e-08  Score=88.11  Aligned_cols=285  Identities=18%  Similarity=0.115  Sum_probs=166.1

Q ss_pred             CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcE---------EEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcc
Q 016458           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWV---------MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV  150 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  150 (389)
                      ..+++++.++.|.-+|..+|+.+..+.......         ..+++  .+..+++++.++.+.-+|..+++..     .
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~-----W  141 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVV-----W  141 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEE-----E
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEE-----e
Confidence            456666664459999999999988876543210         11112  3567788888999999999886521     1


Q ss_pred             eeeeccccc--ceE-EEEEeeC---CCcEEEEee------CCCeEEEEeCCCCeeEEEecCccc---------------C
Q 016458          151 SRMLSGHKG--YVS-CCQYVPD---EDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQ---------------S  203 (389)
Q Consensus       151 ~~~~~~~~~--~v~-~~~~~~~---~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~---------------~  203 (389)
                      ......+..  .+. .-....+   +...+++++      .++.|..+|..+++.+........               .
T Consensus       142 ~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~  221 (582)
T 1flg_A          142 KKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDV  221 (582)
T ss_dssp             EEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCT
T ss_pred             eecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccc
Confidence            111111110  111 0111221   212566655      378999999999998876532100               0


Q ss_pred             C---------------------CCCCeeEEEeeCCCCcEEEEeeC--------------------C----CceEEEeCCC
Q 016458          204 G---------------------HTADVLSVSISGSNSRMFVSGSC--------------------D----STARLWDTRV  238 (389)
Q Consensus       204 ~---------------------~~~~v~~~~~~~~~~~~l~~~~~--------------------d----g~i~i~d~~~  238 (389)
                      .                     ....-..+++.| ...+++.+..                    |    +.|..+|.++
T Consensus       222 g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T  300 (582)
T 1flg_A          222 KAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS  300 (582)
T ss_dssp             TCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT
T ss_pred             ccccCCCccccccccccccccCCccccCCceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC
Confidence            0                     000012345666 4455655542                    2    5799999988


Q ss_pred             CCcceeEEee--ec--------cceEEEEEe-cCCC---EEEEEecCCeEEEEECCCCceeeEeeccCCCC---------
Q 016458          239 ASRAVRTFHG--HE--------GDVNTVKFF-PDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN---------  295 (389)
Q Consensus       239 ~~~~~~~~~~--~~--------~~i~~~~~~-~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------  295 (389)
                      + +.+-.++.  |.        .++. +... .+|+   .++.++.+|.++++|..+++.+..+......+         
T Consensus       301 G-~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~  378 (582)
T 1flg_A          301 G-EVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKT  378 (582)
T ss_dssp             C-CEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTT
T ss_pred             C-CEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccC
Confidence            7 44444432  21        1111 2221 3664   78889999999999999999887654432000         


Q ss_pred             --------------------CC-----------CCeeEEEeCCCCCEEEEEe----------------------------
Q 016458          296 --------------------EI-----------PHVTSIAFSISGRLLFAGY----------------------------  316 (389)
Q Consensus       296 --------------------~~-----------~~i~~~~~~~~~~~l~~~~----------------------------  316 (389)
                                          ..           .....++++|+...+++..                            
T Consensus       379 g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  458 (582)
T 1flg_A          379 GRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIK  458 (582)
T ss_dssp             CCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             CCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeec
Confidence                                00           0012456777666555533                            


Q ss_pred             -----cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          317 -----SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       317 -----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                           .+|.|..||+.+++.+......     .++..-.....+.+++.++.||.++.    ||.++|++..
T Consensus       459 p~~~~~~G~l~A~D~~tG~~~W~~~~~-----~~~~~g~~~tagglvf~g~~dg~l~A----~D~~tG~~lW  521 (582)
T 1flg_A          459 RMYDDHVGSLRAMDPVSGKVVWEHKEH-----LPLWAGVLATAGNLVFTGTGDGYFKA----FDAKSGKELW  521 (582)
T ss_dssp             ESCSSCSEEEEEECTTTCCEEEEEEES-----SCCCSCCEEETTTEEEEECTTSEEEE----EETTTCCEEE
T ss_pred             CCCCCCcceEEEEECCCCCEEEEecCC-----CCCcccceEeCCCEEEEECCCCcEEE----EECCCCCEEE
Confidence                 2578999999999998877421     11211111123567888999999999    9999998753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.16  E-value=9.7e-08  Score=79.54  Aligned_cols=227  Identities=12%  Similarity=0.067  Sum_probs=137.5

Q ss_pred             CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC-C-CeEEEEe
Q 016458          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-D-QTCVLWD  187 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-g~i~iwd  187 (389)
                      .....++|+++++++++-..++.|..|+.....        .... .....+..+++.+++ +++++... + ..|..+|
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--------~~~~-~~~~~p~gia~~~dG-~l~vad~~~~~~~v~~~d  101 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--------QIHA-TVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLV  101 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--------EEEE-ECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--------EEEE-eCCCCceeEEEcCCC-cEEEEeccCCcceEEEEc
Confidence            457789999999877777678899999876521        1111 123467889999987 45554433 2 2577778


Q ss_pred             CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe---------eeccceEEEEE
Q 016458          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---------GHEGDVNTVKF  258 (389)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~i~~~~~  258 (389)
                      ..+++.......    ........++..+ ++..+++...++.|+.+|.......+....         ..-...+.+  
T Consensus       102 ~~~g~~~~~~~~----~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--  174 (306)
T 2p4o_A          102 KSDGTVETLLTL----PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--  174 (306)
T ss_dssp             CTTSCEEEEEEC----TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred             CCCCeEEEEEeC----CCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence            777765443321    1122234444444 455555544588899998764311111110         011134455  


Q ss_pred             ecCCCEEEEE-ecCCeEEEEECCC-Cce--eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEE-
Q 016458          259 FPDGNRFGTG-SDDGTCRLFDIRT-GHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL-  333 (389)
Q Consensus       259 ~~~~~~l~~~-~~dg~i~i~d~~~-~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-  333 (389)
                      +|+++.|+++ ...+.|..|++.. +..  ...+...      .....++++++|+++++....+.|.++|.. ++... 
T Consensus       175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~------~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~  247 (306)
T 2p4o_A          175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ------TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTII  247 (306)
T ss_dssp             EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES------CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEE
T ss_pred             CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc------CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEE
Confidence            7888766554 4678999999875 321  1111111      125678999999887777678899999975 55432 


Q ss_pred             -eecCcCCCCCCCeeEEEEC---CCCCeEEeeeCC
Q 016458          334 -NLGSLQNSHEGRITCLGLS---ADGSALCTGSWD  364 (389)
Q Consensus       334 -~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d  364 (389)
                       .+    .......++++|.   |+++.|+.++..
T Consensus       248 ~~~----~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          248 AQA----EQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             ECG----GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             eec----ccccCCceEEEEecccCCCCEEEEECCC
Confidence             23    2223568999998   887777766554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.15  E-value=3.1e-08  Score=89.68  Aligned_cols=261  Identities=16%  Similarity=0.161  Sum_probs=155.3

Q ss_pred             CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcE-EEEEECC--CCcEEEEecC------CCcEEEEeCCCCCCCCCCCc
Q 016458           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWV-MTCAFSP--TGQSVACGGL------DSVCSIFNLNSPTDKDGNLP  149 (389)
Q Consensus        79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v-~~~~~~~--~~~~l~~~~~------dg~i~vw~~~~~~~~~~~~~  149 (389)
                      +..++.++.|+.|..+|..+|+.+.......... ..+.-+|  .+..+++++.      ++.|..+|..+++.      
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~------  188 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGEL------  188 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCE------
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcE------
Confidence            4467788889999999999999988776432100 0011111  1334555544      78999999987652      


Q ss_pred             ceeeeccc-------------------------------------ccce-EEEEEeeCCCcEEEEeeCC-----------
Q 016458          150 VSRMLSGH-------------------------------------KGYV-SCCQYVPDEDTHLITSSGD-----------  180 (389)
Q Consensus       150 ~~~~~~~~-------------------------------------~~~v-~~~~~~~~~~~~l~~~~~d-----------  180 (389)
                       .-.+...                                     .+.+ ..+++.+.. ..++.+..+           
T Consensus       189 -~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g~vy~~~g~~~~~~~~~~~g  266 (571)
T 2ad6_A          189 -KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPG  266 (571)
T ss_dssp             -EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCS
T ss_pred             -EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCC-CeEEEECCCCccccCCccCC
Confidence             1111100                                     0000 124566654 345544422           


Q ss_pred             -----CeEEEEeCCCCeeEEEecCcccC-----CCCCCeeEEEeeCCCC---cEEEEeeCCCceEEEeCCCCCcceeEEe
Q 016458          181 -----QTCVLWDITTGLRTSVFGGEFQS-----GHTADVLSVSISGSNS---RMFVSGSCDSTARLWDTRVASRAVRTFH  247 (389)
Q Consensus       181 -----g~i~iwd~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~  247 (389)
                           +.|..+|..+++....+......     ....++. +.... ++   .+++.++.+|.++++|..++ +.+....
T Consensus       267 d~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG-~~~w~~~  343 (571)
T 2ad6_A          267 DNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENG-NLIVAEK  343 (571)
T ss_dssp             CCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTC-CEEEEEE
T ss_pred             CceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCC-CEEeeec
Confidence                 36999999999998877432100     0112221 22222 44   46778888999999999887 4443332


Q ss_pred             eec-------------cce--------------------------EEEEEecCCCEEEEEe-------------------
Q 016458          248 GHE-------------GDV--------------------------NTVKFFPDGNRFGTGS-------------------  269 (389)
Q Consensus       248 ~~~-------------~~i--------------------------~~~~~~~~~~~l~~~~-------------------  269 (389)
                      ...             .++                          ..++++|+..++++..                   
T Consensus       344 ~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  423 (571)
T 2ad6_A          344 VDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQF  423 (571)
T ss_dssp             SSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCc
Confidence            111             011                          2467888777777654                   


Q ss_pred             ------------------cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE
Q 016458          270 ------------------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  331 (389)
Q Consensus       270 ------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (389)
                                        .+|.|..||+.+++.+..+.....      +....+...+..+++++.||.|+.+|..+++.
T Consensus       424 ~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~------~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          424 FVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA------AWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             CCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC------ccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence                              347899999999998877654322      22222233566788899999999999999999


Q ss_pred             EEeecCcCCCCCCCeeEEEECCCCCeEE
Q 016458          332 VLNLGSLQNSHEGRITCLGLSADGSALC  359 (389)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~  359 (389)
                      +..+.........+   +.+..+|+.++
T Consensus       498 lw~~~~~~~~~~~p---~~~~~~G~~yv  522 (571)
T 2ad6_A          498 LWNFKMPSGGIGSP---MTYSFKGKQYI  522 (571)
T ss_dssp             EEEEECSSCCCSCC---EEEEETTEEEE
T ss_pred             EEEEeCCCCcEeee---EEEEECCEEEE
Confidence            98885322222223   33546676444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.14  E-value=5.9e-07  Score=85.05  Aligned_cols=294  Identities=12%  Similarity=0.055  Sum_probs=176.2

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe--------------eCCCcEEEEEECCCCcEEEEecCCCc
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--------------LPCAWVMTCAFSPTGQSVACGGLDSV  132 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (389)
                      ...|.++...++|. |..|+..+-|.++|..+........              .....|.++...++|. |..|+.++-
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G  334 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG  334 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence            35699999888875 5556664558889987665432211              2345699999988886 455666666


Q ss_pred             EEEEeCCCCCCCCCCCccee-------eecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCC
Q 016458          133 CSIFNLNSPTDKDGNLPVSR-------MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH  205 (389)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  205 (389)
                      |..++......     ....       ........|.++...+++  .|..|+.++-|..||..++...... .. ....
T Consensus       335 l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~-~~-~~~~  405 (781)
T 3v9f_A          335 INFISNAPPTF-----HTWSYSPTQMNESSLSNKVVSSVCDDGQG--KLWIGTDGGGINVFENGKRVAIYNK-EN-RELL  405 (781)
T ss_dssp             EEEECSSCCSC-----EEEC----CCCSSCCSSSCEEEEEECTTS--CEEEEEBSSCEEEEETTEEEEECC-------CC
T ss_pred             EEEeCCCCCcc-----eeeccCccccccCCCCCcceEEEEEcCCC--CEEEEeCCCcEEEEECCCCeEEEcc-CC-CCCC
Confidence            88888765321     0000       001123568888877765  4677777777899998754332211 00 0223


Q ss_pred             CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe---eeccceEEEEEecCCCEEEEEecCCeEEEEECCCC
Q 016458          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG  282 (389)
Q Consensus       206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  282 (389)
                      ...|.++...+ ++.+ ..|+.++-|..+|..+. . ...+.   .....|.++...+++. |..|+. +-|..||..++
T Consensus       406 ~~~v~~i~~d~-~g~l-Wigt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~  479 (781)
T 3v9f_A          406 SNSVLCSLKDS-EGNL-WFGTYLGNISYYNTRLK-K-FQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASK  479 (781)
T ss_dssp             CSBEEEEEECT-TSCE-EEEETTEEEEEECSSSC-E-EEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSS
T ss_pred             CcceEEEEECC-CCCE-EEEeccCCEEEEcCCCC-c-EEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCC
Confidence            45688888775 5554 45676677899987654 2 22222   1245688888887776 444555 56889998776


Q ss_pred             ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeee
Q 016458          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS  362 (389)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  362 (389)
                      +................|.++...++|++.+ |+.++-+..||..+++... +..........|.++..+++|.+.++ +
T Consensus       480 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~-T  556 (781)
T 3v9f_A          480 KVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLA-T  556 (781)
T ss_dssp             SCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEE-E
T ss_pred             eEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEE-E
Confidence            5433222111111124589999998887655 4444458889887665433 32111223457899999999876554 4


Q ss_pred             CCCeeEEeecceecccCcccCc
Q 016458          363 WDTNLKVNLGFWRVQEGALSPW  384 (389)
Q Consensus       363 ~dg~i~i~~~~W~~~~~~~~~~  384 (389)
                      .+|.+..    |+..+++...+
T Consensus       557 ~~Glv~~----~d~~~~~~~~~  574 (781)
T 3v9f_A          557 GEGLVCF----PSARNFDYQVF  574 (781)
T ss_dssp             TTEEEEE----SCTTTCCCEEE
T ss_pred             CCCceEE----ECCCCCcEEEc
Confidence            4676577    88877765544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.14  E-value=4.4e-07  Score=76.87  Aligned_cols=246  Identities=12%  Similarity=0.019  Sum_probs=152.6

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE-EecCCCcEEEEeCCCCCCCC
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKD  145 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~  145 (389)
                      .+..+|.+..++. +|+.+.. ..|+..++........+. ....+..++|++.+..|+ +-...+.|..+++....   
T Consensus        33 ~d~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~---  106 (349)
T 3v64_C           33 PDRRSCKALGPEP-VLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---  106 (349)
T ss_dssp             TTSSCEEESSSCC-EEEEECB-SCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred             CCCCcccccccCc-eeEeecc-cceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC---
Confidence            4456677777744 5554443 458888876655443333 345588999998665555 44567889999887633   


Q ss_pred             CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG  225 (389)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  225 (389)
                          ..............+++.+.+..++++-...+.|.+.++.........     .........+++.|.++.++++-
T Consensus       107 ----~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-----~~~l~~P~~iavdp~~g~ly~td  177 (349)
T 3v64_C          107 ----VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-----WQSLEKPRAIALHPMEGTIYWTD  177 (349)
T ss_dssp             ----CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CTTCSCEEEEEEETTTTEEEEEE
T ss_pred             ----ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE-----eCCCCCcceEEEecCcCeEEEec
Confidence                122222222345678888766567777777889999998765544433     23345678999998666666665


Q ss_pred             eCC-CceEEEeCCCCCcceeEE-eeeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeE
Q 016458          226 SCD-STARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS  302 (389)
Q Consensus       226 ~~d-g~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~  302 (389)
                      ... +.|..+++...  ....+ ...-...+.++++|++..|+.+ ...+.|..+|+............     ......
T Consensus       178 ~~~~~~I~r~~~dG~--~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~-----~~~P~g  250 (349)
T 3v64_C          178 WGNTPRIEASSMDGS--GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-----LPHPFA  250 (349)
T ss_dssp             CSSSCEEEEEETTSC--SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-----CSSEEE
T ss_pred             cCCCCEEEEEeCCCC--CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC-----CCCceE
Confidence            555 78888887643  22222 1223357899999876666555 45678999998754332222211     123577


Q ss_pred             EEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458          303 IAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       303 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (389)
                      +++ ..+..+++-...+.|..++..+++....+
T Consensus       251 iav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          251 ITV-FEDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             EEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            887 34445555556678888886566554444

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.13  E-value=1.5e-07  Score=79.12  Aligned_cols=248  Identities=7%  Similarity=-0.041  Sum_probs=146.8

Q ss_pred             CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceee-----------------ecccccceEEEEEee-CCC
Q 016458          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM-----------------LSGHKGYVSCCQYVP-DED  171 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~~~-~~~  171 (389)
                      .....++|.+++++++++..++.|..|+...+..     .....                 .......+..+++.+ ++ 
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-   92 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-----VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-   92 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-----EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-----EEEecccccccccccccccchhccccCCCCceEEEcCCCC-
Confidence            3456788999998788888899999998765320     00000                 001123578899987 54 


Q ss_pred             cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-----------------CCceEEE
Q 016458          172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----------------DSTARLW  234 (389)
Q Consensus       172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~i~i~  234 (389)
                      . |+.+...+.|..+|..++...... .............+++.+.+++++++...                 ++.|..|
T Consensus        93 ~-l~v~d~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  170 (322)
T 2fp8_A           93 Q-LYIVDCYYHLSVVGSEGGHATQLA-TSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY  170 (322)
T ss_dssp             E-EEEEETTTEEEEECTTCEECEEEE-SEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred             c-EEEEECCCCEEEEeCCCCEEEEec-ccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence            4 555555555888887765432221 11000112346778888734455554322                 3678888


Q ss_pred             eCCCCCcceeEEeeeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCc--eeeEeeccCCCCCCCCeeEEEeCCCCCE
Q 016458          235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIAFSISGRL  311 (389)
Q Consensus       235 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~  311 (389)
                      |.... . +..+.........++++|+++.|+++ +.++.|.+|++....  ....+..  ..   . ...++++++|++
T Consensus       171 d~~~~-~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~---g-P~gi~~d~~G~l  242 (322)
T 2fp8_A          171 DPSTK-E-TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IP---N-PGNIKRNADGHF  242 (322)
T ss_dssp             ETTTT-E-EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CS---S-EEEEEECTTSCE
T ss_pred             eCCCC-E-EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CC---C-CCCeEECCCCCE
Confidence            87644 2 22222223446789999999866655 566899999987532  1122221  11   1 578999999986


Q ss_pred             EEEEec----------CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458          312 LFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       312 l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      .++...          .+.|..+|. .++.+..+..........++++++ .+++++++....+.|..    +++...
T Consensus       243 ~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~----~~~~~~  314 (322)
T 2fp8_A          243 WVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGI----LVYDKK  314 (322)
T ss_dssp             EEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEE----EEC---
T ss_pred             EEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEE----Eecccc
Confidence            666544          467888886 466666653211111345777777 46666666667788888    877643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.12  E-value=6.3e-08  Score=76.52  Aligned_cols=198  Identities=9%  Similarity=0.034  Sum_probs=130.4

Q ss_pred             cceeeeecccccCc--EEEEEEcCCCCeEEEEecCC--cEEEEeCCCCCeeEEEeeCCCc-EEEEEECCCCcEE-EEecC
Q 016458           56 DLVCCRTLQGHAGK--VYSLDWTSERNRIVSASQDG--RLIVWNALTSQKTHAIKLPCAW-VMTCAFSPTGQSV-ACGGL  129 (389)
Q Consensus        56 ~~~~~~~l~~h~~~--v~~~~~~~~~~~l~~~~~dg--~v~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l-~~~~~  129 (389)
                      ..+.++++ .|...  ...+.|+ ++.++.+.+.+|  .|+++|+.+++.+..+...... .-.++..  ++.| .....
T Consensus        30 ~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~  105 (262)
T 3nol_A           30 DYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWK  105 (262)
T ss_dssp             EEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESS
T ss_pred             ceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEee
Confidence            34566666 45443  4789998 666666777766  8999999999999988765432 1234443  4444 44456


Q ss_pred             CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCe
Q 016458          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV  209 (389)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  209 (389)
                      ++.+.+||..+.+       ....+....   ....+++++. .|+.+..++.|.++|..+.+....+........-..+
T Consensus       106 ~~~v~v~D~~t~~-------~~~ti~~~~---eG~glt~dg~-~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~l  174 (262)
T 3nol_A          106 NGLGFVWNIRNLR-------QVRSFNYDG---EGWGLTHNDQ-YLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPEL  174 (262)
T ss_dssp             SSEEEEEETTTCC-------EEEEEECSS---CCCCEEECSS-CEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred             CCEEEEEECccCc-------EEEEEECCC---CceEEecCCC-EEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence            8899999998754       444444321   1223445664 4555555789999999999888877432101111334


Q ss_pred             eEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee------------ccceEEEEEecCCCEEEEEecC
Q 016458          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------------EGDVNTVKFFPDGNRFGTGSDD  271 (389)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~d  271 (389)
                      +.+.+.  ++.+++..-.++.|.+.|.+++ +.+..+...            ....+.|+|+|+++.|++.+..
T Consensus       175 NELe~~--~G~lyan~w~~~~I~vIDp~tG-~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          175 NELEWV--DGEIFANVWQTNKIVRIDPETG-KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEEEEE--TTEEEEEETTSSEEEEECTTTC-BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             ceeEEE--CCEEEEEEccCCeEEEEECCCC-cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            567776  5666666657889999999987 666665431            1346899999988888877753

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.12  E-value=3.9e-08  Score=91.05  Aligned_cols=275  Identities=10%  Similarity=0.019  Sum_probs=151.9

Q ss_pred             EEEEcC-CCCeEEEEecCC-----------cEEEEeCCCCCeeE--EEee-CCCcEEEEEECCCCcEEEEecC-CCcEEE
Q 016458           72 SLDWTS-ERNRIVSASQDG-----------RLIVWNALTSQKTH--AIKL-PCAWVMTCAFSPTGQSVACGGL-DSVCSI  135 (389)
Q Consensus        72 ~~~~~~-~~~~l~~~~~dg-----------~v~iw~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~-dg~i~v  135 (389)
                      ++++.+ ++++++.|+.+.           .+.+||..+++-..  .... +.....++++..++++++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556667 888888887543           58899988776332  2222 2223345677889999999984 457999


Q ss_pred             EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee-CC-----CeEEEEeCCCCeeEEEec---CcccCCCC
Q 016458          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GD-----QTCVLWDITTGLRTSVFG---GEFQSGHT  206 (389)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~~---~~~~~~~~  206 (389)
                      ||..+..     +.....+.... .-.+++..+++ ++++.|+ .+     ..+.+||..+......-.   ........
T Consensus       270 yd~~t~~-----W~~~~~~~~~R-~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~  342 (656)
T 1k3i_A          270 YDSSSDS-----WIPGPDMQVAR-GYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK  342 (656)
T ss_dssp             EEGGGTE-----EEECCCCSSCC-SSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT
T ss_pred             ecCcCCc-----eeECCCCCccc-cccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc
Confidence            9987633     11111111111 11234455565 6778887 34     569999998876544310   00000100


Q ss_pred             CCeeEEEeeCCCCcEEEEeeCCC---------ceEEEeCCCCCcceeEEeeecc---------ceEEEEEec-CCCEEEE
Q 016458          207 ADVLSVSISGSNSRMFVSGSCDS---------TARLWDTRVASRAVRTFHGHEG---------DVNTVKFFP-DGNRFGT  267 (389)
Q Consensus       207 ~~v~~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~---------~i~~~~~~~-~~~~l~~  267 (389)
                         . ..+.. ++.+++.++.+|         .+..||.... ........+..         .-.++.|.. ++++++.
T Consensus       343 ---~-~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~-~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~  416 (656)
T 1k3i_A          343 ---Q-GLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS-GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF  416 (656)
T ss_dssp             ---T-GGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTT-CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE
T ss_pred             ---c-ceeec-CCceEEEECCCCcEEEecCccceeeeecCCc-ceeecCCccccccccCCCCCCCceEeccCCCCeEEEE
Confidence               0 11112 444445554443         5677887765 22222221111         223444543 6778888


Q ss_pred             EecCC-----------eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC-----------CcEEEEE
Q 016458          268 GSDDG-----------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----------GDCYVWD  325 (389)
Q Consensus       268 ~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d  325 (389)
                      |+.++           .|.+||..+..-........ . ....-.+++..|++++++.|+.+           ..+.+||
T Consensus       417 GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~m-p-~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~yd  494 (656)
T 1k3i_A          417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL-Y-FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYV  494 (656)
T ss_dssp             CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC-S-SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEE
T ss_pred             eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCC-C-CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEc
Confidence            87543           68888887665433220011 1 11112345666899999998754           4689999


Q ss_pred             cccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458          326 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  363 (389)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  363 (389)
                      ..+.+-.. +... ......-.+..+.++|+.++.||.
T Consensus       495 p~t~~W~~-~~~~-~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          495 PEQDTFYK-QNPN-SIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             GGGTEEEE-CCCC-SSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCceee-cCCC-CCccccccHhhcCCCcEEEecCCC
Confidence            87765332 2111 111122234556789999999885

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.10  E-value=5.2e-07  Score=77.59  Aligned_cols=245  Identities=11%  Similarity=0.002  Sum_probs=151.6

Q ss_pred             cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE-EecCCCcEEEEeCCCCCCCCCC
Q 016458           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGN  147 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~  147 (389)
                      .-.|.+..++ .+|+.+.. ..|+..++........+. ....+..++|++.+..|+ +-...+.|..++++...     
T Consensus        78 ~~~C~~~~~~-~~l~~~~~-~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-----  149 (386)
T 3v65_B           78 RRSCKALGPE-PVLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-----  149 (386)
T ss_dssp             SSCEEECSSC-CEEEEECB-SCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-----
T ss_pred             CCeECCcccc-ceeEeecC-ccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-----
Confidence            3456665553 35544443 568888887665544433 345688999997655554 54567889999987632     


Q ss_pred             CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (389)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (389)
                        ..............+++.+.+..++++-...+.|.+.++........+     .........+++.|.++.++++-..
T Consensus       150 --~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~-----~~~l~~P~giavdp~~g~ly~td~~  222 (386)
T 3v65_B          150 --VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-----WQSLEKPRAIALHPMEGTIYWTDWG  222 (386)
T ss_dssp             --EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE-----CSSCSCEEEEEEETTTTEEEEEECS
T ss_pred             --cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee-----cCCCCCCcEEEEEcCCCeEEEeccC
Confidence              122222222345678888766566777777889999998765544443     2333567899999866666666555


Q ss_pred             C-CceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEe
Q 016458          228 D-STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF  305 (389)
Q Consensus       228 d-g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (389)
                      . +.|..+++... .........-.....|+++|++..|+.+ +..+.|..+|+............     ......+++
T Consensus       223 ~~~~I~r~~~dG~-~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-----~~~P~giav  296 (386)
T 3v65_B          223 NTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-----LPHPFAITV  296 (386)
T ss_dssp             SSCEEEEEETTSC-SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS-----CSSEEEEEE
T ss_pred             CCCEEEEEeCCCC-CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC-----CCCceEEEE
Confidence            5 77888887643 2222222223457899999866666555 45678999998754332222211     123577888


Q ss_pred             CCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458          306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (389)
                       ..+.++++-...+.|..+|..+++....+
T Consensus       297 -~~~~ly~td~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          297 -FEDSLYWTDWHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             -ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             -ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence             34445555556778988986666655555

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.07  E-value=8.2e-08  Score=86.87  Aligned_cols=255  Identities=13%  Similarity=0.127  Sum_probs=151.7

Q ss_pred             EEEEecCCcEEEEeCCCCCeeEEEeeCCC----cEEE-EEECCCCcEEEEec------CCCcEEEEeCCCCCCCCCCCcc
Q 016458           82 IVSASQDGRLIVWNALTSQKTHAIKLPCA----WVMT-CAFSPTGQSVACGG------LDSVCSIFNLNSPTDKDGNLPV  150 (389)
Q Consensus        82 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~------~dg~i~vw~~~~~~~~~~~~~~  150 (389)
                      |+.++.|+.|..+|..+|+.+........    .+.+ -.. .++ .+++++      .+|.|+-+|..+++.       
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~-------  194 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQ-------  194 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCE-------
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcE-------
Confidence            88888899999999999999887664321    1111 011 134 455554      378999999988652       


Q ss_pred             eeeeccc-------------------------------------ccce-EEEEEeeCCCcEEEEeeCC------------
Q 016458          151 SRMLSGH-------------------------------------KGYV-SCCQYVPDEDTHLITSSGD------------  180 (389)
Q Consensus       151 ~~~~~~~-------------------------------------~~~v-~~~~~~~~~~~~l~~~~~d------------  180 (389)
                      .-.+...                                     ...+ ..+++.+.. .+++.+..+            
T Consensus       195 ~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd  273 (599)
T 1w6s_A          195 VWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGD  273 (599)
T ss_dssp             EEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSC
T ss_pred             EEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCC
Confidence            1111100                                     0001 134555555 456655544            


Q ss_pred             ----CeEEEEeCCCCeeEEEecCcccCC-----CCCCeeEEEeeCCCC---cEEEEeeCCCceEEEeCCCCCcceeEEee
Q 016458          181 ----QTCVLWDITTGLRTSVFGGEFQSG-----HTADVLSVSISGSNS---RMFVSGSCDSTARLWDTRVASRAVRTFHG  248 (389)
Q Consensus       181 ----g~i~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  248 (389)
                          +.|..+|..+++....+.......     ...++. +.....++   ..++.++.+|.++++|.+++ +.+.....
T Consensus       274 ~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~lw~~~~  351 (599)
T 1w6s_A          274 NKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDG-ALVSANKL  351 (599)
T ss_dssp             CTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTC-CEEEEEES
T ss_pred             ccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCC-CEeecccc
Confidence                489999999999988874321000     011121 22220144   56778889999999999887 44433321


Q ss_pred             ec-------------cce--------------------------EEEEEecCCCEEEEEe--------------------
Q 016458          249 HE-------------GDV--------------------------NTVKFFPDGNRFGTGS--------------------  269 (389)
Q Consensus       249 ~~-------------~~i--------------------------~~~~~~~~~~~l~~~~--------------------  269 (389)
                      ..             .++                          ..++++|+..++++..                    
T Consensus       352 ~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~  431 (599)
T 1w6s_A          352 DDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFF  431 (599)
T ss_dssp             STTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred             cCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcce
Confidence            10             011                          2356777666555431                    


Q ss_pred             -------------------cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce
Q 016458          270 -------------------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK  330 (389)
Q Consensus       270 -------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (389)
                                         .+|.|..||+.+++.+........      ...-.+...+..++.++.||.++.||..+++
T Consensus       432 ~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~------~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~  505 (599)
T 1w6s_A          432 VGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFA------VWGGTMATAGDLVFYGTLDGYLKARDSDTGD  505 (599)
T ss_dssp             CCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCC------ccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence                               347899999999988877654321      1111122356788889999999999999999


Q ss_pred             EEEeecCcCCCCCCCeeEEEECCCCCe
Q 016458          331 VVLNLGSLQNSHEGRITCLGLSADGSA  357 (389)
Q Consensus       331 ~~~~~~~~~~~~~~~v~~~~~~~~~~~  357 (389)
                      .+..+.........+   +.+..+|+.
T Consensus       506 ~lW~~~l~~g~~~~P---~~y~~~G~q  529 (599)
T 1w6s_A          506 LLWKFKIPSGAIGYP---MTYTHKGTQ  529 (599)
T ss_dssp             EEEEEECSSCCCSCC---EEEEETTEE
T ss_pred             EEEEeeCCCCcEecc---EEEEeCCEE
Confidence            999885322222223   445557763

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.07  E-value=1.9e-06  Score=73.06  Aligned_cols=238  Identities=6%  Similarity=-0.034  Sum_probs=143.7

Q ss_pred             EEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe
Q 016458          113 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL  192 (389)
Q Consensus       113 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  192 (389)
                      +|.+..++. +|+.+. ...|+..++....       ...... ....+..++|.+.++.++++-...+.|..+++....
T Consensus        37 ~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~-------~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~  106 (349)
T 3v64_C           37 SCKALGPEP-VLLFAN-RIDIRQVLPHRSE-------YTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN  106 (349)
T ss_dssp             CEEESSSCC-EEEEEC-BSCEEEECTTSCC-------EEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cccccccCc-eeEeec-ccceEEEeCCCCe-------eEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC
Confidence            344444433 333332 3457777776522       222222 234578899998765666666678899999998765


Q ss_pred             eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe-cC
Q 016458          193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DD  271 (389)
Q Consensus       193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d  271 (389)
                      .....     .........+++.+.+++++++-...+.|.+.++... .........-.....++++|.+..|+... ..
T Consensus       107 ~~~~~-----~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~  180 (349)
T 3v64_C          107 VEEVV-----STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA-HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN  180 (349)
T ss_dssp             CEEEE-----CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECTTCSCEEEEEEETTTTEEEEEECSS
T ss_pred             ceEEE-----eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC-ceEEEEeCCCCCcceEEEecCcCeEEEeccCC
Confidence            44443     2223446788888766777777777789999998754 22222222334578999999665555444 44


Q ss_pred             -CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEE
Q 016458          272 -GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  349 (389)
Q Consensus       272 -g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  349 (389)
                       +.|..+++..... ..+..    ........++++|++..|+.+. ..+.|..+|+........+    .........+
T Consensus       181 ~~~I~r~~~dG~~~-~~~~~----~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~----~~~~~~P~gi  251 (349)
T 3v64_C          181 TPRIEASSMDGSGR-RIIAD----THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI----SQGLPHPFAI  251 (349)
T ss_dssp             SCEEEEEETTSCSC-EESCC----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE----CSSCSSEEEE
T ss_pred             CCEEEEEeCCCCCc-EEEEE----CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEE----eCCCCCceEE
Confidence             7899998764332 22211    1122468999998777776665 4567999998754333223    2223456778


Q ss_pred             EECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458          350 GLSADGSALCTGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       350 ~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~  380 (389)
                      ++. .+.++++-...+.|..    .+..+|+
T Consensus       252 av~-~~~ly~td~~~~~V~~----~~~~~G~  277 (349)
T 3v64_C          252 TVF-EDSLYWTDWHTKSINS----ANKFTGK  277 (349)
T ss_dssp             EEE-TTEEEEEETTTTEEEE----EETTTCC
T ss_pred             EEE-CCEEEEecCCCCeEEE----EEccCCC
Confidence            883 4445555555667766    6644554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.07  E-value=1.8e-07  Score=73.92  Aligned_cols=186  Identities=12%  Similarity=0.060  Sum_probs=124.2

Q ss_pred             cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC
Q 016458          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT  190 (389)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  190 (389)
                      ....+.|+ ++.++.+.+.+|.|+++|+.+++       .....  -..........++++.++++.-.++.+.+||..+
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgk-------v~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~T  125 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQ-------PVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMP  125 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSS-------CSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTT
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCc-------EEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCc
Confidence            34678887 46677778888999999999866       22332  1122333223344556777777899999999999


Q ss_pred             CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec-----cceEEEEEecCCCEE
Q 016458          191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-----GDVNTVKFFPDGNRF  265 (389)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l  265 (389)
                      .+.+..+..      ...-..++.   ++..|+.+..++.|.++|..+. +.+..+.-..     ..++.+.|. +|...
T Consensus       126 l~~~~ti~~------~~eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly  194 (268)
T 3nok_A          126 PQRERTTRY------SGEGWGLCY---WNGKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQPVELINELECA-NGVIY  194 (268)
T ss_dssp             TEEEEEEEC------SSCCCCEEE---ETTEEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             CcEEEEEeC------CCceeEEec---CCCEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCcccccccccEEe-CCEEE
Confidence            999999843      122244443   3445555556889999999887 5565554322     134667776 77655


Q ss_pred             EEEecCCeEEEEECCCCceeeEeeccC--------CCCCCCCeeEEEeCCCCCEEEEEec
Q 016458          266 GTGSDDGTCRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLLFAGYS  317 (389)
Q Consensus       266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~~  317 (389)
                      +..-.+..|.+.|..+++.+..+....        ......-.+.++++|+++.|++.+.
T Consensus       195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            555568899999999999888876531        1112234799999998776665544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.06  E-value=2.3e-06  Score=81.10  Aligned_cols=292  Identities=11%  Similarity=0.030  Sum_probs=175.1

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe---------eCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK---------LPCAWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (389)
                      ...|.++...++|. |..|+.++-|..++..+........         .....|.++...+++.+. .|+.++-+..|+
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~  389 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFE  389 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEE
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEE
Confidence            45799999998885 5567766678899877654332211         123569999988877644 555555688888


Q ss_pred             CCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC
Q 016458          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS  217 (389)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  217 (389)
                      ..+.....    ...........|.++...+++  .|..|+.++-|..+|..++....... .  ......|.++...+ 
T Consensus       390 ~~~~~~~~----~~~~~~~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~-~--~~~~~~v~~i~~d~-  459 (781)
T 3v9f_A          390 NGKRVAIY----NKENRELLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLKKFQIIEL-E--KNELLDVRVFYEDK-  459 (781)
T ss_dssp             TTEEEEEC----C-----CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSCEEEECCS-T--TTCCCCEEEEEECT-
T ss_pred             CCCCeEEE----ccCCCCCCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCCcEEEecc-C--CCCCCeEEEEEECC-
Confidence            76422100    000001234568888877665  46667777789999988775443221 0  12345788888776 


Q ss_pred             CCcEEEEeeCCCceEEEeCCCCCcceeEEeee-----ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC
Q 016458          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH  292 (389)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  292 (389)
                      ++.+ ..|+. +-|..||..+. .........     ...|.++...++|.+.+ |+.++-|..||..+++ ...+....
T Consensus       460 ~g~l-wigt~-~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~-~~~~~~~~  534 (781)
T 3v9f_A          460 NKKI-WIGTH-AGVFVIDLASK-KVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL-VRKFNQYE  534 (781)
T ss_dssp             TSEE-EEEET-TEEEEEESSSS-SCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE-EEEECTTT
T ss_pred             CCCE-EEEEC-CceEEEeCCCC-eEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe-EEEccCCC
Confidence            5554 44555 56889998754 222211111     35688999988887554 5554457788876653 33332211


Q ss_pred             CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeec
Q 016458          293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLG  372 (389)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~  372 (389)
                       ......|.++...++|.+.++. .+|.+..||..+++.. .+.....-....|.++..+++|.+.++ +.+| |..   
T Consensus       535 -~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~---  606 (781)
T 3v9f_A          535 -GFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISC---  606 (781)
T ss_dssp             -TCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEE---
T ss_pred             -CCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEE---
Confidence             1123358899998888865544 4665588988765432 222111122346889999988875554 4556 444   


Q ss_pred             ceecccCcccCc
Q 016458          373 FWRVQEGALSPW  384 (389)
Q Consensus       373 ~W~~~~~~~~~~  384 (389)
                       ++..+++...+
T Consensus       607 -~~~~~~~~~~~  617 (781)
T 3v9f_A          607 -YITSKKCFYTY  617 (781)
T ss_dssp             -EETTTTEEEEE
T ss_pred             -EECCCCceEEe
Confidence             66666555443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.02  E-value=5.4e-06  Score=69.19  Aligned_cols=239  Identities=10%  Similarity=0.002  Sum_probs=144.3

Q ss_pred             eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE-EecCCCcEEEEeCCCCCCCCCCCcceeeeccccc
Q 016458           81 RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG  159 (389)
Q Consensus        81 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  159 (389)
                      +|+.+.. ..|+..|+.+.+....+. ....+..++|++.+..|+ +-..++.|..+++......  . .....+...-.
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~--~-~~~~~~~~~~~   77 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--S-SYDTVISRDIQ   77 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCS
T ss_pred             EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC--c-ccEEEEeCCCC
Confidence            4444444 468999988776555443 345688999998665554 4455788999998752100  0 01112222223


Q ss_pred             ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC-CceEEEeCCC
Q 016458          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-STARLWDTRV  238 (389)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~  238 (389)
                      ....+++.+.+++++++-...+.|.++++.........     .........+++.|.++.++++.... +.|..+++..
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-----~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG  152 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEE-----ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence            45788888765566667677899999998765443333     22334678999998566555554433 6788888763


Q ss_pred             CCcceeEE-eeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458          239 ASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (389)
Q Consensus       239 ~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (389)
                      .  ....+ ...-.....++++|++..|+.+. ..+.|..+|+... ....+....  ........+++. .+.++++-.
T Consensus       153 ~--~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~--~~~~~P~giav~-~~~ly~~d~  226 (316)
T 1ijq_A          153 V--DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDE--KRLAHPFSLAVF-EDKVFWTDI  226 (316)
T ss_dssp             C--CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECT--TTTSSEEEEEEE-TTEEEEEET
T ss_pred             C--CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecC--CccCCcEEEEEE-CCEEEEEEC
Confidence            3  22222 22234578999999777666554 5678999998743 333332211  111235677774 344555555


Q ss_pred             cCCcEEEEEcccceEEEee
Q 016458          317 SNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~  335 (389)
                      ..+.|..++..+++....+
T Consensus       227 ~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          227 INEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             TTTEEEEEETTTCCCCEEE
T ss_pred             CCCeEEEEeCCCCcceEEE
Confidence            6778999997766655444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.02  E-value=4.5e-06  Score=69.68  Aligned_cols=224  Identities=8%  Similarity=0.000  Sum_probs=136.7

Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC----CeeEEEecCcccCCCC
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT----GLRTSVFGGEFQSGHT  206 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~  206 (389)
                      ..|+..++....       ...... ....+..+.|.+.++.++++-..++.|..+++..    ......+     ....
T Consensus        10 ~~I~~i~~~~~~-------~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-----~~~~   76 (316)
T 1ijq_A           10 HEVRKMTLDRSE-------YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-----SRDI   76 (316)
T ss_dssp             SSEEEEETTSCC-------CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-----CSSC
T ss_pred             CeEEEEECCCcc-------eEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-----eCCC
Confidence            568888887643       222222 2345788999987656666767789999999876    2222222     1222


Q ss_pred             CCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec-C-CeEEEEECCCCce
Q 016458          207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-D-GTCRLFDIRTGHQ  284 (389)
Q Consensus       207 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~  284 (389)
                      .....+++.+.+++++++-...+.|.++|+... ...............++++|.+..|+.+.. . +.|..+++.. ..
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~  154 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VD  154 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CC
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC-ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CC
Confidence            346788888756677777677889999998743 222222223346789999996666655543 3 6888888764 33


Q ss_pred             eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  363 (389)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  363 (389)
                      ...+...    .......+++++++..|+.+. ..+.|..+|+...........  .........+++. .+.++++-..
T Consensus       155 ~~~~~~~----~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~--~~~~~~P~giav~-~~~ly~~d~~  227 (316)
T 1ijq_A          155 IYSLVTE----NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--EKRLAHPFSLAVF-EDKVFWTDII  227 (316)
T ss_dssp             EEEEECS----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--TTTTSSEEEEEEE-TTEEEEEETT
T ss_pred             eEEEEEC----CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec--CCccCCcEEEEEE-CCEEEEEECC
Confidence            3333211    122478999999877776665 456899999874322221110  1123346778885 3555555556


Q ss_pred             CCeeEEeecceecccCc
Q 016458          364 DTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       364 dg~i~i~~~~W~~~~~~  380 (389)
                      .+.|..    .+..+|+
T Consensus       228 ~~~V~~----~~~~~g~  240 (316)
T 1ijq_A          228 NEAIFS----ANRLTGS  240 (316)
T ss_dssp             TTEEEE----EETTTCC
T ss_pred             CCeEEE----EeCCCCc
Confidence            677877    7766664

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.00  E-value=8.7e-07  Score=80.33  Aligned_cols=261  Identities=14%  Similarity=0.127  Sum_probs=153.4

Q ss_pred             CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCC----cEE---EEEEC-CCCc-EEEEec------CCCcEEEEeCCCCCC
Q 016458           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCA----WVM---TCAFS-PTGQ-SVACGG------LDSVCSIFNLNSPTD  143 (389)
Q Consensus        79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~----~v~---~~~~~-~~~~-~l~~~~------~dg~i~vw~~~~~~~  143 (389)
                      +..++.++.|+.|..+|..+|+.+........    .+.   .+.=. .+++ .+++++      .++.|.-+|..+++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            34678888899999999999999887765431    111   11111 1232 566654      378899999887652


Q ss_pred             CCCCCcceeeeccc-----------------------------------------ccceEEEEEeeCCCcEEEEeeC---
Q 016458          144 KDGNLPVSRMLSGH-----------------------------------------KGYVSCCQYVPDEDTHLITSSG---  179 (389)
Q Consensus       144 ~~~~~~~~~~~~~~-----------------------------------------~~~v~~~~~~~~~~~~l~~~~~---  179 (389)
                      .       -.....                                         ...-..+++.|.. .+++.+..   
T Consensus       197 ~-------W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~-g~vyv~~gn~~  268 (582)
T 1flg_A          197 I-------WMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET-NTIIVGAGNPG  268 (582)
T ss_dssp             E-------EEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT-TEEEEEECCBS
T ss_pred             E-------eecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCC-CEEEEeCCCCC
Confidence            1       000000                                         0000134566665 35554442   


Q ss_pred             -----------------C----CeEEEEeCCCCeeEEEecCcccC-----CCCCCeeEEEeeCCCC---cEEEEeeCCCc
Q 016458          180 -----------------D----QTCVLWDITTGLRTSVFGGEFQS-----GHTADVLSVSISGSNS---RMFVSGSCDST  230 (389)
Q Consensus       180 -----------------d----g~i~iwd~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~---~~l~~~~~dg~  230 (389)
                                       |    +.|..+|..+++....+......     ....++. +.....++   ..++.++.+|.
T Consensus       269 ~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~  347 (582)
T 1flg_A          269 PWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGF  347 (582)
T ss_dssp             SSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSE
T ss_pred             cccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCce
Confidence                             2    68999999999999887432100     0011221 22210144   47888999999


Q ss_pred             eEEEeCCCCCcceeEEeeec-------------cc--------------------------------eEEEEEecCCCEE
Q 016458          231 ARLWDTRVASRAVRTFHGHE-------------GD--------------------------------VNTVKFFPDGNRF  265 (389)
Q Consensus       231 i~i~d~~~~~~~~~~~~~~~-------------~~--------------------------------i~~~~~~~~~~~l  265 (389)
                      ++++|.+++ +.+.......             .+                                -..++++|+..++
T Consensus       348 l~~lD~~tG-~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~  426 (582)
T 1flg_A          348 FYVVDRSNG-KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLF  426 (582)
T ss_dssp             EEEEETTTC-CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCE
T ss_pred             EEEEECCCC-CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEE
Confidence            999999887 4443332211             00                                0134666655555


Q ss_pred             EEEe---------------------------------cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEE
Q 016458          266 GTGS---------------------------------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL  312 (389)
Q Consensus       266 ~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (389)
                      ++..                                 .+|.|..||+.+++.+........      +..-.....+.++
T Consensus       427 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~------~~~g~~~tagglv  500 (582)
T 1flg_A          427 YVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP------LWAGVLATAGNLV  500 (582)
T ss_dssp             EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC------CCSCCEEETTTEE
T ss_pred             EEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC------CcccceEeCCCEE
Confidence            5432                                 268899999999998877654321      1111122246788


Q ss_pred             EEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeE
Q 016458          313 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL  358 (389)
Q Consensus       313 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  358 (389)
                      +.++.||.++.||..+++.+..+........   .-+.|..+|+..
T Consensus       501 f~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a---~P~~y~~~G~qY  543 (582)
T 1flg_A          501 FTGTGDGYFKAFDAKSGKELWKFQTGSGIVS---PPITWEQDGEQY  543 (582)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEECSSCCCS---CCEEEEETTEEE
T ss_pred             EEECCCCcEEEEECCCCCEEEEecCCCCccc---CceEEEECCEEE
Confidence            8899999999999999999998853211111   225565677643

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.99  E-value=2.2e-06  Score=67.22  Aligned_cols=189  Identities=13%  Similarity=0.109  Sum_probs=123.5

Q ss_pred             CcEEEEEECCCCcEEEEecCC--CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458          110 AWVMTCAFSPTGQSVACGGLD--SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  187 (389)
                      .....+.|++ +.++.+.+.+  ..|+.+|+.+++       ......-. ...........++.++...-.++.+.+||
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgk-------v~~~~~l~-~~~fgeGi~~~~~~ly~ltw~~~~v~v~D   91 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGR-------ILQRAEVP-PPYFGAGIVAWRDRLIQLTWRNHEGFVYD   91 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCC-------EEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCC-------EEEEEeCC-CCcceeEEEEeCCEEEEEEeeCCEEEEEE
Confidence            4466888886 5555666664  489999999865       33333222 12222222333456677777899999999


Q ss_pred             CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec-----cceEEEEEecCC
Q 016458          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-----GDVNTVKFFPDG  262 (389)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~i~~~~~~~~~  262 (389)
                      ..+.+.+..+...      ..-..++.  +.+.+++ +..++.|.++|..+. +.+..+.-..     ..++.+.+. +|
T Consensus        92 ~~tl~~~~ti~~~------~~Gwglt~--dg~~L~v-Sdgs~~l~~iDp~t~-~~~~~I~V~~~g~~~~~lNeLe~~-~G  160 (243)
T 3mbr_X           92 LATLTPRARFRYP------GEGWALTS--DDSHLYM-SDGTAVIRKLDPDTL-QQVGSIKVTAGGRPLDNLNELEWV-NG  160 (243)
T ss_dssp             TTTTEEEEEEECS------SCCCEEEE--CSSCEEE-ECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred             CCcCcEEEEEeCC------CCceEEee--CCCEEEE-ECCCCeEEEEeCCCC-eEEEEEEEccCCcccccceeeEEe-CC
Confidence            9999999998431      22244543  2444444 455889999999887 5555554322     235566765 66


Q ss_pred             CEEEEEecCCeEEEEECCCCceeeEeeccCC--------CCCCCCeeEEEeCCCCCEEEEEecC
Q 016458          263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--------ENEIPHVTSIAFSISGRLLFAGYSN  318 (389)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~d  318 (389)
                      ...+..-.+..|.+.|..+++.+..+.....        .....-.+.++++|+++.|++.+..
T Consensus       161 ~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          161 ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            6555555688999999999999888765421        1122347899999988877766543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.99  E-value=3.1e-06  Score=72.81  Aligned_cols=237  Identities=6%  Similarity=-0.042  Sum_probs=145.3

Q ss_pred             EEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee
Q 016458          114 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR  193 (389)
Q Consensus       114 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  193 (389)
                      |.+..+. .+|+.+. ...|+.+++....       ...... ....+..++|.+.+..++++-...+.|..+++.....
T Consensus        81 C~~~~~~-~~l~~~~-~~~I~~i~~~~~~-------~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~  150 (386)
T 3v65_B           81 CKALGPE-PVLLFAN-RIDIRQVLPHRSE-------YTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV  150 (386)
T ss_dssp             EEECSSC-CEEEEEC-BSCEEEECTTSCC-------CEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE
T ss_pred             ECCcccc-ceeEeec-CccceeeccCCCc-------EEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc
Confidence            4444443 3343333 3567888876532       222222 2345788999987656666767788999999987665


Q ss_pred             EEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe-cC-
Q 016458          194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DD-  271 (389)
Q Consensus       194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-  271 (389)
                      ...+     .........+++.+..++++++-...+.|.+.++... .....+...-.....++++|.+..|+... .. 
T Consensus       151 ~~~~-----~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~-~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~  224 (386)
T 3v65_B          151 EEVV-----STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA-HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT  224 (386)
T ss_dssp             EEEE-----CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEECSSS
T ss_pred             EEEE-----eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC-ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCC
Confidence            4444     2223345678888756777777777788999888744 22222333335678999999766665554 34 


Q ss_pred             CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEE
Q 016458          272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  350 (389)
Q Consensus       272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  350 (389)
                      +.|..+++............     ......++++|++..|+.+. ..+.|..+|+........+    .........|+
T Consensus       225 ~~I~r~~~dG~~~~~~~~~~-----~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~----~~~~~~P~gia  295 (386)
T 3v65_B          225 PRIEASSMDGSGRRIIADTH-----LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI----SQGLPHPFAIT  295 (386)
T ss_dssp             CEEEEEETTSCSCEEEECSS-----CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEE----CSSCSSEEEEE
T ss_pred             CEEEEEeCCCCCcEEEEECC-----CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEE----ECCCCCceEEE
Confidence            68988887654332222111     12368999998777666664 4567999998654333333    22234567888


Q ss_pred             ECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458          351 LSADGSALCTGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       351 ~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~  380 (389)
                      +. .+.++++-...+.|..    .+..+|+
T Consensus       296 v~-~~~ly~td~~~~~V~~----~~~~~G~  320 (386)
T 3v65_B          296 VF-EDSLYWTDWHTKSINS----ANKFTGK  320 (386)
T ss_dssp             EE-TTEEEEEETTTTEEEE----EETTTCC
T ss_pred             EE-CCEEEEeeCCCCeEEE----EECCCCc
Confidence            83 4455555556677777    6654554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.98  E-value=5.3e-06  Score=66.00  Aligned_cols=211  Identities=11%  Similarity=0.104  Sum_probs=137.9

Q ss_pred             eecccccCcEEEEEEcCCCCeEE-EEecCCcEEEEeCCCCCeeEEEeeC-CCcEEEEEECCCCcEEEEecCCCcEEEEeC
Q 016458           61 RTLQGHAGKVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLP-CAWVMTCAFSPTGQSVACGGLDSVCSIFNL  138 (389)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~  138 (389)
                      +.+.+-.+.+..++|+|+++.|+ +...++.|...|.. ++.+..+... ....-.+++.+++.++++.-.++.+.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            46777778899999999876555 56778889999987 8888777543 245788899999987777667788999988


Q ss_pred             CCCCCCCCCCcceeee------cccccceEEEEEeeCCCcEEEEeeCCC-eEEEEeC-CCCeeEEEecCc--ccCCCCCC
Q 016458          139 NSPTDKDGNLPVSRML------SGHKGYVSCCQYVPDEDTHLITSSGDQ-TCVLWDI-TTGLRTSVFGGE--FQSGHTAD  208 (389)
Q Consensus       139 ~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~-~~~~~~~~~~~~--~~~~~~~~  208 (389)
                      .....    .......      ...+.....++|.|.++.++++.-.+. .|..|+- ............  ........
T Consensus        99 ~~~~~----i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A           99 TPNSE----VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD  174 (255)
T ss_dssp             CTTCC----EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred             CCCCe----eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence            76431    0111111      123455789999998755444444443 4444541 011111211100  00123456


Q ss_pred             eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec---------cceEEEEEecCCCEEEEEecCCeEEEEEC
Q 016458          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE---------GDVNTVKFFPDGNRFGTGSDDGTCRLFDI  279 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  279 (389)
                      +.+++++|..+++++....+..|..+|...  +.+..+.-..         .....|+|.++|+ |+..+..+.++.|.-
T Consensus       175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~g--~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          175 VSGAEFNQQKNTLLVLSHESRALQEVTLVG--EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP  251 (255)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTTC--CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred             ceeEEEcCCCCeEEEEECCCCeEEEEcCCC--CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence            799999998888889888899999999773  3444443221         2568899999998 444567777777753

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.97  E-value=1.9e-06  Score=68.56  Aligned_cols=208  Identities=10%  Similarity=0.115  Sum_probs=132.8

Q ss_pred             eecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceE
Q 016458          153 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR  232 (389)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  232 (389)
                      .+.+-...+..++|+|+++.++++...++.|...|.. +.....++.    ........+++.+ ++.++++.-.++.+.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l----~g~~D~EGIa~~~-~g~~~vs~E~~~~l~   94 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL----DFVKDLETIEYIG-DNQFVISDERDYAIY   94 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC----SSCSSEEEEEECS-TTEEEEEETTTTEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec----CCCCChHHeEEeC-CCEEEEEECCCCcEE
Confidence            4445556899999999876777778889999999998 777776632    2235678888887 666666665678899


Q ss_pred             EEeCCCCCc--ceeEEe------eeccceEEEEEecCCCEEEEEecCCeEEEEECCC---CceeeEeec--cCCCCCCCC
Q 016458          233 LWDTRVASR--AVRTFH------GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT---GHQLQVYYQ--QHGENEIPH  299 (389)
Q Consensus       233 i~d~~~~~~--~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~--~~~~~~~~~  299 (389)
                      ++++.....  .+....      ..+.....++|+|.++.|+++.......+|.+..   ...+.....  .........
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD  174 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence            998776532  112221      1234468999999988888777655555555541   111222111  000111224


Q ss_pred             eeEEEeCCCCC-EEEEEecCCcEEEEEcccceEEEeecCcCCCC------CCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          300 VTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH------EGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       300 i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      +.+++++|... +++.+..+..+.++|.. ++.+..+... .+.      -.....|+|+++|++.+ .+.-+.+++
T Consensus       175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~-~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~  248 (255)
T 3qqz_A          175 VSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLT-KGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYR  248 (255)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECS-TTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEE
T ss_pred             ceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcC-CccCCcccccCCCCeeEECCCCCEEE-EcCCceEEE
Confidence            78999999654 55556667788899965 5555544321 221      13678999999998544 466665544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.96  E-value=1.3e-05  Score=69.21  Aligned_cols=240  Identities=10%  Similarity=-0.013  Sum_probs=147.9

Q ss_pred             eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEe-cCCCcEEEEeCCCCCCCCCCCcceeeeccccc
Q 016458           81 RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG  159 (389)
Q Consensus        81 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  159 (389)
                      +|+.+. ...|+..++........+. ....+..++|++.+..|+.+ ..++.|+.+++.....   .............
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~---~~~~~~~~~~~~~  159 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG---VSSYDTVISRDIQ  159 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------CCCEEEECSSCS
T ss_pred             eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC---CCcceEEEeCCCC
Confidence            555444 3679999987765544433 44568899999866655554 5578888888865220   0011222232344


Q ss_pred             ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-CCceEEEeCCC
Q 016458          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRV  238 (389)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~  238 (389)
                      ....+++.+.+.+++++-...+.|.+.++........+     .........+++.|..+.++++-.. .+.|...++..
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~-----~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG  234 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  234 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE-----ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE-----eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence            57788898865577777777899999999876555444     2334457899999855555555423 47888888874


Q ss_pred             CCcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec
Q 016458          239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (389)
Q Consensus       239 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (389)
                      . .........-.....|++++++..|+.+. ..+.|..+|+..... ..+....  ........+++. .+.++.+-..
T Consensus       235 ~-~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~--~~l~~P~gl~v~-~~~lywtd~~  309 (400)
T 3p5b_L          235 V-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDE--KRLAHPFSLAVF-EDKVFWTDII  309 (400)
T ss_dssp             C-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECS--STTSSEEEEEEE-TTEEEEEESS
T ss_pred             C-ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCC--CCCCCCEEEEEe-CCEEEEecCC
Confidence            3 22222222234678999998777776654 567899999875433 3332211  111235677773 3344445556


Q ss_pred             CCcEEEEEcccceEEEee
Q 016458          318 NGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       318 dg~i~i~d~~~~~~~~~~  335 (389)
                      .+.|..+|..+++....+
T Consensus       310 ~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          310 NEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             SCSEEEEESSSCCCCEEE
T ss_pred             CCeEEEEEcCCCCceEEE
Confidence            678999997777665555

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.94  E-value=1.1e-06  Score=76.72  Aligned_cols=245  Identities=10%  Similarity=0.040  Sum_probs=142.3

Q ss_pred             cEEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC-CC----cEEEEeCCCCC
Q 016458           69 KVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DS----VCSIFNLNSPT  142 (389)
Q Consensus        69 ~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~vw~~~~~~  142 (389)
                      ....|+++| ++..|..+...+.|+.+|...+.... +.........++|+++++.|+++.. ++    .+.+++.... 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~-  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG-  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT-
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc-
Confidence            467899998 45566666655889999987655443 3334566899999999996666654 22    2333443221 


Q ss_pred             CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc-E
Q 016458          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-M  221 (389)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~  221 (389)
                           ......+. .......+++.|++..++++-..++.|..++...+.......    .........++++| +++ +
T Consensus       216 -----~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~----~~~~~~P~gia~~p-dG~~l  284 (430)
T 3tc9_A          216 -----FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT----IQDSGWEFHIQFHP-SGNYA  284 (430)
T ss_dssp             -----SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE----CSSSSCCEEEEECT-TSSEE
T ss_pred             -----eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE----cCCCCcceeEEEcC-CCCEE
Confidence                 11111221 123456788999444666666678899999998776533321    12224577899999 666 5


Q ss_pred             EEEeeCCCceEEEeCCCCCcc---eeEEeee---------------ccceE-EEEEe--------cCCCEEEEEecCCeE
Q 016458          222 FVSGSCDSTARLWDTRVASRA---VRTFHGH---------------EGDVN-TVKFF--------PDGNRFGTGSDDGTC  274 (389)
Q Consensus       222 l~~~~~dg~i~i~d~~~~~~~---~~~~~~~---------------~~~i~-~~~~~--------~~~~~l~~~~~dg~i  274 (389)
                      +++-...+.|..++.......   ...+.+.               -.... .++..        +++.+.++-...+.|
T Consensus       285 yv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I  364 (430)
T 3tc9_A          285 YIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI  364 (430)
T ss_dssp             EEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred             EEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEE
Confidence            666666788999876532111   1222211               01123 45553        345666666677889


Q ss_pred             EEEECCCCceeeEeecc----CC--------CCCCCCeeEEEeCCC-CCEEEEEecCCcEEEEEcc
Q 016458          275 RLFDIRTGHQLQVYYQQ----HG--------ENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       275 ~i~d~~~~~~~~~~~~~----~~--------~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~  327 (389)
                      +.++ .++.........    .+        .........++++|+ +.++++-..++.|+.++++
T Consensus       365 ~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          365 RILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            9998 445433322210    00        011224788999985 5555554456678877653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.91  E-value=1.3e-05  Score=69.12  Aligned_cols=232  Identities=9%  Similarity=-0.022  Sum_probs=141.9

Q ss_pred             EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC----eeEEEec
Q 016458          123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG----LRTSVFG  198 (389)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~  198 (389)
                      +|+.+. ...|+..++....       ... +......+..++|.+.++.++++-...+.|+.+++...    ...... 
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~-------~~~-~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-  154 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSE-------YTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-  154 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCS-------CEE-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE-
T ss_pred             eeEEec-cceeEEEccCCcc-------eeE-eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-
Confidence            344333 4678888887633       122 22334567899999876566666667889999998752    222333 


Q ss_pred             CcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec--CCeEEE
Q 016458          199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD--DGTCRL  276 (389)
Q Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i  276 (389)
                          .........+++.+..++++++-...+.|.+.++... .....+.........|+++|.+.+|+....  .+.|..
T Consensus       155 ----~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~-~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~  229 (400)
T 3p5b_L          155 ----SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKK  229 (400)
T ss_dssp             ----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC-SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEE
T ss_pred             ----eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC-ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEE
Confidence                2234567888998766777777777889999998754 222233333345789999996666665542  478999


Q ss_pred             EECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec-CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458          277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (389)
Q Consensus       277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (389)
                      .++...........     .......+++++++..|+.+.. .+.|..+|+...........  ........+|++. .+
T Consensus       230 ~~~dG~~~~~~~~~-----~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~l~~P~gl~v~-~~  301 (400)
T 3p5b_L          230 GGLNGVDIYSLVTE-----NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--EKRLAHPFSLAVF-ED  301 (400)
T ss_dssp             EETTSCSCEEEECS-----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEEC--SSTTSSEEEEEEE-TT
T ss_pred             EeCCCCccEEEEEC-----CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeC--CCCCCCCEEEEEe-CC
Confidence            99875433322221     1124789999998887777654 56899999865433322211  1223345677774 33


Q ss_pred             CeEEeeeCCCeeEEeecceecccCcc
Q 016458          356 SALCTGSWDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       356 ~~l~~~~~dg~i~i~~~~W~~~~~~~  381 (389)
                      .++++-...+.|..    ++..+|+.
T Consensus       302 ~lywtd~~~~~V~~----~~~~~G~~  323 (400)
T 3p5b_L          302 KVFWTDIINEAIFS----ANRLTGSD  323 (400)
T ss_dssp             EEEEEESSSCSEEE----EESSSCCC
T ss_pred             EEEEecCCCCeEEE----EEcCCCCc
Confidence            45555555677777    77556643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.88  E-value=1e-05  Score=67.39  Aligned_cols=235  Identities=8%  Similarity=-0.015  Sum_probs=141.2

Q ss_pred             eEEEEecCCcEEEEeCCCCCe-eEEEeeCCCcEEEEEECCCCcEE-EEecCCCcEEEEeCCCCCCCCCCCcceeeecccc
Q 016458           81 RIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK  158 (389)
Q Consensus        81 ~l~~~~~dg~v~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  158 (389)
                      +|+.+. ...|+..++..... ...+......+..++|++.+..| .+-...+.|..+++.....      ........-
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~------~~~~~~~~l   78 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------VQNVVVSGL   78 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC------CCEEEEECC
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc------eEEEEcCCC
Confidence            444443 35789999877642 21222222357789999865544 4555678899998876421      011111222


Q ss_pred             cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCCceEEEeCC
Q 016458          159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTR  237 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~  237 (389)
                      .....+++.+.+..++++-...+.|.++++.........     .........+++.|..+.++++-. ..+.|...++.
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-----~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  153 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF-----WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD  153 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEE-----eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence            345678888766567777777889999998765443333     233456789999985555555432 35778888876


Q ss_pred             CCCcceeEE-eeeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE
Q 016458          238 VASRAVRTF-HGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG  315 (389)
Q Consensus       238 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  315 (389)
                      ..  ....+ ...-...+.++++|++..|+.+ +..+.|..+|+.... ...+...    .......+++.. +.++.+-
T Consensus       154 G~--~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~----~~~~P~glav~~-~~lywtd  225 (318)
T 3sov_A          154 GS--SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKG----SLPHPFALTLFE-DILYWTD  225 (318)
T ss_dssp             SC--SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECS----CCSCEEEEEEET-TEEEEEE
T ss_pred             CC--CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEecC----CCCCceEEEEeC-CEEEEEe
Confidence            33  22222 2223456899999976666555 456889999987433 3333221    112356777753 3444455


Q ss_pred             ecCCcEEEEEcccceEEEee
Q 016458          316 YSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       316 ~~dg~i~i~d~~~~~~~~~~  335 (389)
                      ...+.|..++..+++....+
T Consensus       226 ~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          226 WSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             TTTTEEEEEETTTCCSCEEE
T ss_pred             cCCCeEEEEECCCCCceEEE
Confidence            56678999998777654444

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.88  E-value=3.8e-06  Score=73.25  Aligned_cols=245  Identities=12%  Similarity=0.060  Sum_probs=141.8

Q ss_pred             cEEEEEEcCC--CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC---C-cEEEEeCCCCC
Q 016458           69 KVYSLDWTSE--RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---S-VCSIFNLNSPT  142 (389)
Q Consensus        69 ~v~~~~~~~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g-~i~vw~~~~~~  142 (389)
                      ....|+|+|+  ...|..+...+.|+.+|..++..... .........++++++++++++...+   . .+...+.....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            4678999985  44555555448899999877665443 3344568999999999944443321   1 13333322111


Q ss_pred             CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc-E
Q 016458          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-M  221 (389)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~  221 (389)
                            .....+. .-.....+++.|++..++++-..++.|+.+|..++.....+..   .........++++| +++ +
T Consensus       219 ------~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~---~~~~~~~~~ia~dp-dG~~L  287 (433)
T 4hw6_A          219 ------TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM---MDTKGSNFHIVWHP-TGDWA  287 (433)
T ss_dssp             ------CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE---CSCCSSCEEEEECT-TSSEE
T ss_pred             ------ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec---cCCCCCcccEEEeC-CCCEE
Confidence                  0011111 2234566788884436666666788999999987765222211   11222334799999 555 5


Q ss_pred             EEEeeCCCceEEEeCCCCCcc---eeEEeee---------------ccceEEEEE---------ecCCCEEEEEecCCeE
Q 016458          222 FVSGSCDSTARLWDTRVASRA---VRTFHGH---------------EGDVNTVKF---------FPDGNRFGTGSDDGTC  274 (389)
Q Consensus       222 l~~~~~dg~i~i~d~~~~~~~---~~~~~~~---------------~~~i~~~~~---------~~~~~~l~~~~~dg~i  274 (389)
                      +++-...+.|+.++.......   ...+.+.               -.....+++         .+++.++++-...+.|
T Consensus       288 Yvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I  367 (433)
T 4hw6_A          288 YIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV  367 (433)
T ss_dssp             EEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred             EEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence            566566788999886532111   1122221               123567999         6777777777778899


Q ss_pred             EEEECCCCceeeEeeccCC-------------CCCCCCeeEEEeC-CCCCEEEEEecCCcEEEEEcc
Q 016458          275 RLFDIRTGHQLQVYYQQHG-------------ENEIPHVTSIAFS-ISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       275 ~i~d~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      +.++. ++. +..+.....             .........++++ ++|.++++=..++.|+.++++
T Consensus       368 ~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          368 RVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            99985 453 333322110             0112346788888 556555555556677777653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.88  E-value=2.5e-06  Score=80.20  Aligned_cols=196  Identities=10%  Similarity=0.045  Sum_probs=111.4

Q ss_pred             cEEEEEEc-CCCCeEEEEec-CC----cEEEEeCCCC-CeeE-EEeeCCCcEEEEEECCCCcEEEEecCC-----CcEEE
Q 016458           69 KVYSLDWT-SERNRIVSASQ-DG----RLIVWNALTS-QKTH-AIKLPCAWVMTCAFSPTGQSVACGGLD-----SVCSI  135 (389)
Q Consensus        69 ~v~~~~~~-~~~~~l~~~~~-dg----~v~iw~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~v  135 (389)
                      .+...+|| |||++||-+.. +|    .|+++|+.++ +.+. .+..   ....++|+|+++.|+....+     ..|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            68889999 99998885443 22    5999999988 6321 1111   13467899999888777654     25777


Q ss_pred             EeCCCCCCCCCCCcceeeec-ccccceEEEEEeeCCCcEEEEee--CCCeEEEEeCCCCe-eE--EEecCcccCCCCCCe
Q 016458          136 FNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSS--GDQTCVLWDITTGL-RT--SVFGGEFQSGHTADV  209 (389)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~-~~--~~~~~~~~~~~~~~v  209 (389)
                      +++.++...     ....+. ........+.|+|++..++++..  ....|.++|+.++. ..  ..+.    .......
T Consensus       252 ~~lgt~~~~-----~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~----~~~~~~~  322 (751)
T 2xe4_A          252 HVMGKLQSE-----DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR----PREKGVR  322 (751)
T ss_dssp             EETTSCGGG-----CEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS----CCCTTCC
T ss_pred             EECCCCchh-----cEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee----cCCCCce
Confidence            887654310     111211 22234567899999854444443  24568888988752 11  2221    2334455


Q ss_pred             eEEEeeCCCCcEEEEeeCC--C--ceEEEeCCCCCcceeE-Eeeecc--ceEEEEEecCCCEEEEEecCCe--EEEEEC
Q 016458          210 LSVSISGSNSRMFVSGSCD--S--TARLWDTRVASRAVRT-FHGHEG--DVNTVKFFPDGNRFGTGSDDGT--CRLFDI  279 (389)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~d--g--~i~i~d~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~l~~~~~dg~--i~i~d~  279 (389)
                      .++.|+. ++.+++....+  +  .|..+|+.+. ..... +..+..  .+..+.+. .+.++++...+|.  |.++++
T Consensus       323 ~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          323 YDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEET-TTEEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            6666554 55555555544  3  5666676542 22222 333433  34445554 3334556666775  555665

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.81  E-value=2e-05  Score=65.64  Aligned_cols=226  Identities=5%  Similarity=-0.065  Sum_probs=140.1

Q ss_pred             CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE-EEecCcccCCCCCC
Q 016458          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT-SVFGGEFQSGHTAD  208 (389)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~  208 (389)
                      ...|+..+++....     ....... ....+..+.|.+.++.++.+-...+.|..+++...... ..+     ......
T Consensus        12 ~~~I~~i~l~~~~~-----~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~-----~~~l~~   80 (318)
T 3sov_A           12 RRDLRLVDATNGKE-----NATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-----VSGLLS   80 (318)
T ss_dssp             EEEEEEEETTCTTS-----CCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE-----EECCSC
T ss_pred             cCeEEEEECCCCce-----EEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE-----cCCCCC
Confidence            46788888876321     0111122 22456789999876566677677889999998776321 112     112234


Q ss_pred             eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe--cCCeEEEEECCCCceee
Q 016458          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRTGHQLQ  286 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~  286 (389)
                      ...+++.+..++++++-...+.|.++++... ...............+++.|.+..|+...  ..+.|..+++.... ..
T Consensus        81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~  158 (318)
T 3sov_A           81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RF  158 (318)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CE
T ss_pred             ccEEEEEcCCCeEEEEECCCCEEEEEECCCC-cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eE
Confidence            6778888757777777777789999998744 22222223345678999999766666555  35789888876433 22


Q ss_pred             EeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458          287 VYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (389)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  365 (389)
                      .+...    .....+.+++++++..|+.+. ..+.|..+|+.........    .........+++.. +.++++-...+
T Consensus       159 ~~~~~----~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~----~~~~~~P~glav~~-~~lywtd~~~~  229 (318)
T 3sov_A          159 IIINS----EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV----KGSLPHPFALTLFE-DILYWTDWSTH  229 (318)
T ss_dssp             EEECS----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE----CSCCSCEEEEEEET-TEEEEEETTTT
T ss_pred             EEEEC----CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe----cCCCCCceEEEEeC-CEEEEEecCCC
Confidence            22211    112368999999777776664 4578999998643332222    22334567787754 34555555567


Q ss_pred             eeEEeecceecccCcc
Q 016458          366 NLKVNLGFWRVQEGAL  381 (389)
Q Consensus       366 ~i~i~~~~W~~~~~~~  381 (389)
                      .|..    .+..+|+.
T Consensus       230 ~V~~----~~~~~G~~  241 (318)
T 3sov_A          230 SILA----CNKYTGEG  241 (318)
T ss_dssp             EEEE----EETTTCCS
T ss_pred             eEEE----EECCCCCc
Confidence            7877    77766654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.80  E-value=2.5e-06  Score=74.37  Aligned_cols=243  Identities=9%  Similarity=0.064  Sum_probs=136.3

Q ss_pred             cEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC----eEEE
Q 016458          111 WVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ----TCVL  185 (389)
Q Consensus       111 ~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i  185 (389)
                      ....++++| ++..|+++...+.|+.+|+....        ...+.........+++++++..++++...++    .+.+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~  209 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--------VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYI  209 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--------EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--------EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence            357889998 45666666555788889887633        2222234456788999999843455444322    3444


Q ss_pred             EeCCCCee-EEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee-eccceEEEEEecCCC
Q 016458          186 WDITTGLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGN  263 (389)
Q Consensus       186 wd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~  263 (389)
                      ++...... ...+.      .......++++|.++.++++-..++.|..++.... ........ .......++|+|+++
T Consensus       210 ~~~~g~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~-~~~~~~~~~~~~~P~gia~~pdG~  282 (430)
T 3tc9_A          210 LTRESGFKVITELT------KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ-ETTPLFTIQDSGWEFHIQFHPSGN  282 (430)
T ss_dssp             EEGGGTSCSEEEEE------ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT-EEEEEEECSSSSCCEEEEECTTSS
T ss_pred             EeCCCceeeeeeec------cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC-cEEEEEEcCCCCcceeEEEcCCCC
Confidence            44332211 11221      12345678888866777777667889999998754 22111111 123467899999999


Q ss_pred             EEE-EEecCCeEEEEECCCC--ce--eeEeeccCCC----------CCCCCee-EEEeC--------CCCCEEEEEecCC
Q 016458          264 RFG-TGSDDGTCRLFDIRTG--HQ--LQVYYQQHGE----------NEIPHVT-SIAFS--------ISGRLLFAGYSNG  319 (389)
Q Consensus       264 ~l~-~~~~dg~i~i~d~~~~--~~--~~~~~~~~~~----------~~~~~i~-~~~~~--------~~~~~l~~~~~dg  319 (389)
                      +|+ +-...+.|..++....  ..  ...+......          ....... .++..        ++|.+.++-..++
T Consensus       283 ~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~  362 (430)
T 3tc9_A          283 YAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENH  362 (430)
T ss_dssp             EEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGT
T ss_pred             EEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCc
Confidence            554 4456788999886532  11  1122111000          0011123 45553        3455555555667


Q ss_pred             cEEEEEcccceEEEeecCc----C---------CCCCCCeeEEEECCC-CCeEEeeeCCCeeEE
Q 016458          320 DCYVWDTLLAKVVLNLGSL----Q---------NSHEGRITCLGLSAD-GSALCTGSWDTNLKV  369 (389)
Q Consensus       320 ~i~i~d~~~~~~~~~~~~~----~---------~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i  369 (389)
                      .|+.++ ..+.........    .         ...-.....|+++++ +.++++-.....|+.
T Consensus       363 ~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~  425 (430)
T 3tc9_A          363 CIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRK  425 (430)
T ss_dssp             EEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEE
T ss_pred             EEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence            888888 355544333210    0         011235789999994 655555555677776

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.79  E-value=1e-06  Score=81.59  Aligned_cols=248  Identities=10%  Similarity=0.135  Sum_probs=136.1

Q ss_pred             EEEECC-CCcEEEEecCCC-----------cEEEEeCCCCCCCCCCCcceeee-cccccceEEEEEeeCCCcEEEEee-C
Q 016458          114 TCAFSP-TGQSVACGGLDS-----------VCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSS-G  179 (389)
Q Consensus       114 ~~~~~~-~~~~l~~~~~dg-----------~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~-~  179 (389)
                      .+++.+ +++.++.|+.+.           .+.+||..++.     +.....+ ..+.....++++..++ .+++.|+ .
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~-----w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~  263 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI-----VSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGND  263 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC-----BCCCEEEECSCCCSSCEEEECTTS-CEEEECSSS
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc-----EEeCcccCCCCCCccccccCCCCC-CEEEeCCCC
Confidence            456666 888888887543           57889887744     2222222 1223334456677776 6777877 4


Q ss_pred             CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CC-----CceEEEeCCCCCcceeEEeeec-cc
Q 016458          180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CD-----STARLWDTRVASRAVRTFHGHE-GD  252 (389)
Q Consensus       180 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~~~~~~-~~  252 (389)
                      +..+.+||..+..-...-.    ......-.+++..+ ++++++.|+ .+     ..+.+||..+. . ...+.... .+
T Consensus       264 ~~~v~~yd~~t~~W~~~~~----~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~-~-W~~~~~~~~~p  336 (656)
T 1k3i_A          264 AKKTSLYDSSSDSWIPGPD----MQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSK-T-WTSLPNAKVNP  336 (656)
T ss_dssp             TTCEEEEEGGGTEEEECCC----CSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTT-E-EEEETTSCSGG
T ss_pred             CCceEEecCcCCceeECCC----CCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCC-c-ceeCCCccccc
Confidence            5689999998876544321    11122223455555 778888888 34     46899998754 1 22221000 00


Q ss_pred             e----EEEEEecCCCEEEEEecCC---------eEEEEECCCCceeeEeeccCC----CCCCCCeeEEEeC-CCCCEEEE
Q 016458          253 V----NTVKFFPDGNRFGTGSDDG---------TCRLFDIRTGHQLQVYYQQHG----ENEIPHVTSIAFS-ISGRLLFA  314 (389)
Q Consensus       253 i----~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~----~~~~~~i~~~~~~-~~~~~l~~  314 (389)
                      .    ....+..++..++.++.+|         .+..||..+............    ......-.++.|. .++++++.
T Consensus       337 ~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~  416 (656)
T 1k3i_A          337 MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF  416 (656)
T ss_dssp             GCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE
T ss_pred             cccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEE
Confidence            0    0011223455556665544         467888877654332221110    0000112444454 36778888


Q ss_pred             EecCC-----------cEEEEEcccceEEEeecCcCCCCCCC-eeEEEECCCCCeEEeeeCC-----------CeeEEee
Q 016458          315 GYSNG-----------DCYVWDTLLAKVVLNLGSLQNSHEGR-ITCLGLSADGSALCTGSWD-----------TNLKVNL  371 (389)
Q Consensus       315 ~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d-----------g~i~i~~  371 (389)
                      |+.++           .|.+||..+..-......  ..+... -.+++..|++++++.||.+           ..+.+  
T Consensus       417 GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~--  492 (656)
T 1k3i_A          417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN--GLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEI--  492 (656)
T ss_dssp             CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT--CCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEE--
T ss_pred             eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccC--CCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEE--
Confidence            87543           577888776554332200  111122 2345667899999999865           34667  


Q ss_pred             cceecccCc
Q 016458          372 GFWRVQEGA  380 (389)
Q Consensus       372 ~~W~~~~~~  380 (389)
                        ||..+++
T Consensus       493 --ydp~t~~  499 (656)
T 1k3i_A          493 --YVPEQDT  499 (656)
T ss_dssp             --EEGGGTE
T ss_pred             --EcCCCCc
Confidence              8887765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.76  E-value=4.7e-05  Score=71.26  Aligned_cols=248  Identities=10%  Similarity=-0.044  Sum_probs=146.9

Q ss_pred             EEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE-EEecCCCcEEEEeCCCCCCCCCCCc
Q 016458           71 YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLP  149 (389)
Q Consensus        71 ~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~  149 (389)
                      +|.+..+. .+|+.+.. ..|+..++........+ .....+..++|++....| ++-...+.|+.+++......   ..
T Consensus       388 ~C~~~~~~-p~Ll~an~-~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~---~~  461 (791)
T 3m0c_C          388 ACKAVGSI-AYLFFTNR-HEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SS  461 (791)
T ss_dssp             CCEETTSC-CEEEEECB-SSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------
T ss_pred             eeeecccc-cccccccc-cceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC---cc
Confidence            34444332 24444433 56888888765544433 344568899999855544 45555678888888753210   01


Q ss_pred             ceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC-
Q 016458          150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-  228 (389)
Q Consensus       150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-  228 (389)
                      ....+.........|++.+.+.+++++-...+.|.+.++........+     .........|++.|..+.++++-... 
T Consensus       462 ~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~-----~~~l~~P~gIaVDp~~g~LYwtD~g~~  536 (791)
T 3m0c_C          462 YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTP  536 (791)
T ss_dssp             CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSS
T ss_pred             eeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEE-----eCCCCCcceEEEecCCCCEEEecCCCC
Confidence            122233233456778898877677777778899999999866554444     23345688999999556555554333 


Q ss_pred             CceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC
Q 016458          229 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  307 (389)
Q Consensus       229 g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (389)
                      +.|...++... .....+...-.....|++++.+..|+.+. ..+.|..+++.............   .......|++. 
T Consensus       537 ~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~---~l~~P~glav~-  611 (791)
T 3m0c_C          537 AKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK---RLAHPFSLAVF-  611 (791)
T ss_dssp             CEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT---TTSSEEEEEEE-
T ss_pred             CeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCC---ccCCCCEEEEe-
Confidence            67888888643 22222222334688999998766666554 56789999987544333332211   11124566663 


Q ss_pred             CCCEEEEEe-cCCcEEEEEcccceEEEee
Q 016458          308 SGRLLFAGY-SNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       308 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~  335 (389)
                       +..|+.+. ..+.|...|..+++.+..+
T Consensus       612 -~~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          612 -EDKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             -TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             -CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence             33555544 5577888887666554444

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.76  E-value=5.6e-05  Score=63.38  Aligned_cols=277  Identities=8%  Similarity=0.025  Sum_probs=146.8

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEee----CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCC
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL----PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT  142 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  142 (389)
                      ...+.+|.|.+++..+++ +.+|.| +...+.++.-.....    ....+..+.|.+ +..++ ++..+.|.. ..+.++
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~  109 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ  109 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence            347999999887777774 456755 333333432222221    234688999976 44444 445564433 222222


Q ss_pred             CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (389)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  222 (389)
                          .+........+.+.+..+.+.+++ ..++ ++.+|.|.. ....+..-....    ......+..+.+.+ ++.++
T Consensus       110 ----tW~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~~~g~v~~-S~DgG~tW~~~~----~~~~~~~~~~~~~~-~~~~~  177 (327)
T 2xbg_A          110 ----SWSQIPLDPKLPGSPRLIKALGNG-SAEM-ITNVGAIYR-TKDSGKNWQALV----QEAIGVMRNLNRSP-SGEYV  177 (327)
T ss_dssp             ----SCEECCCCTTCSSCEEEEEEEETT-EEEE-EETTCCEEE-ESSTTSSEEEEE----CSCCCCEEEEEECT-TSCEE
T ss_pred             ----CceECccccCCCCCeEEEEEECCC-CEEE-EeCCccEEE-EcCCCCCCEEee----cCCCcceEEEEEcC-CCcEE
Confidence                111111111223456777777765 4444 445565432 122233332221    23445788999988 66666


Q ss_pred             EEeeCCCceEE-EeCCCCCcceeEE-eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe
Q 016458          223 VSGSCDSTARL-WDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV  300 (389)
Q Consensus       223 ~~~~~dg~i~i-~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i  300 (389)
                      +++. +|.+.. .|-. + .....+ ......+..+.+.+++..+ .++.+|.+++.+...++.-....... ......+
T Consensus       178 ~~g~-~G~~~~S~d~g-G-~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~-~~~~~~~  252 (327)
T 2xbg_A          178 AVSS-RGSFYSTWEPG-Q-TAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPL-RRNSVGF  252 (327)
T ss_dssp             EEET-TSSEEEEECTT-C-SSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTT-SSCCSCE
T ss_pred             EEEC-CCcEEEEeCCC-C-CceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCc-ccCCcce
Confidence            6654 454443 3421 1 222221 2345578889999988755 45567887776433233222221110 0111247


Q ss_pred             eEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      ..+.+.+++..++++ .+|.+ .+....++.-..+... ......+.++.|.+++ .+++++.+|.|.-
T Consensus       253 ~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~-~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~  317 (327)
T 2xbg_A          253 LDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDV-KKVPSNFYKILFFSPD-QGFILGQKGILLR  317 (327)
T ss_dssp             EEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGG-TTSSSCCCEEEEEETT-EEEEECSTTEEEE
T ss_pred             EEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCcc-CCCCCCeEEEEEECCC-ceEEEcCCceEEE
Confidence            889999887776665 46666 4455555444333210 1234567889887555 4667778897765

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.73  E-value=0.00013  Score=71.25  Aligned_cols=287  Identities=14%  Similarity=0.090  Sum_probs=157.8

Q ss_pred             cCcEEEEEEcCC------CCeEEEEec-CCcEEEEeCCCCCeeEEEeeCC-CcEEEEEEC--CCCcEEEEecCCCcEEEE
Q 016458           67 AGKVYSLDWTSE------RNRIVSASQ-DGRLIVWNALTSQKTHAIKLPC-AWVMTCAFS--PTGQSVACGGLDSVCSIF  136 (389)
Q Consensus        67 ~~~v~~~~~~~~------~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~--~~~~~l~~~~~dg~i~vw  136 (389)
                      .+.|.|+++.|.      ++++|.|.. |++|+|+++.+.+.+....... ....++.+.  ....+|.+|-.||.+..+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            457999999863      368999996 9999999998877665544322 233444332  244678899999998777


Q ss_pred             eCCCCCCCCCCCccee-eecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE-Ee
Q 016458          137 NLNSPTDKDGNLPVSR-MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV-SI  214 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~-~~  214 (389)
                      .++...   +.+...+ ..-+ ..++.-..+...+...+++.+ +....+|.-...-....+       ....+..+ .|
T Consensus       633 ~~d~~t---g~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~l~~s~l-------~~~~v~~~~~F  700 (1158)
T 3ei3_A          633 GLNIET---GLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHKLVFSNV-------NLKEVNYMCPL  700 (1158)
T ss_dssp             EECTTT---CCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESSSSEEEEEB-------SSSCCCEEEEE
T ss_pred             EEcCCC---CccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCceEEecc-------ChHHhceEecc
Confidence            765421   1111111 1222 234544444444433344433 343444443322111111       11233333 33


Q ss_pred             eCCC-CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC----------------------
Q 016458          215 SGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD----------------------  271 (389)
Q Consensus       215 ~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------------------  271 (389)
                      +... .+-++..+ ++.++|..+....+....--+-...+..++++|+.+.++.+..+                      
T Consensus       701 ~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  779 (1158)
T 3ei3_A          701 NSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQAL  779 (1158)
T ss_dssp             CCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCS
T ss_pred             CcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhh
Confidence            3211 23344333 45699988765422222222234567889999877765554321                      


Q ss_pred             ---------------------------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEE---eCCC-CCEEEEEe----
Q 016458          272 ---------------------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA---FSIS-GRLLFAGY----  316 (389)
Q Consensus       272 ---------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~-~~~l~~~~----  316 (389)
                                                 +.|++.|-.+.+.+..+.....+    .+.+++   |..+ ..++++|+    
T Consensus       780 ~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE----~~~sv~~v~~~~~~~~~lvVGTa~~~  855 (1158)
T 3ei3_A          780 SSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNE----YALSLVSCKLGKDPNTYFIVGTAMVY  855 (1158)
T ss_dssp             EEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTE----EEEEEEEECCTTCCCCEEEEEEEECC
T ss_pred             hhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCc----ceEEEEEEEEccCCCEEEEEEeeecC
Confidence                                       23666776666655554433222    244443   4433 46888887    


Q ss_pred             ------cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458          317 ------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       317 ------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~  380 (389)
                            ..|.|++|++..++......   ....++|++++-- +|++|++.  ...+++    |++...+
T Consensus       856 ~~e~~~~~Gri~vf~v~~~kL~lv~~---~~v~g~v~al~~~-~g~Lla~i--g~~l~v----y~l~~~~  915 (1158)
T 3ei3_A          856 PEEAEPKQGRIVVFQYSDGKLQTVAE---KEVKGAVYSMVEF-NGKLLASI--NSTVRL----YEWTTEK  915 (1158)
T ss_dssp             TTCSSCCCEEEEEEEEETTEEEEEEE---EEESSCEEEEEEE-TTEEEEEE--TTEEEE----EEECTTS
T ss_pred             CCCCCCCceEEEEEEEECCEEEEEEE---EEcCCcCEEEeee-CCEEEEEc--CCEEEE----EECCCCc
Confidence                  35789999987544332222   3456789988743 45444433  478999    9987654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.73  E-value=0.00015  Score=66.27  Aligned_cols=203  Identities=7%  Similarity=-0.048  Sum_probs=117.9

Q ss_pred             cCcEEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCe-eEEEeeCCCcEEEEEECCCCc-EEEEecCCCcEEEEeCCCCCC
Q 016458           67 AGKVYSLDWTSERNRIVSAS-QDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTD  143 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~  143 (389)
                      -+.+.+|+|++.+..|+.+. ..+.|..+++..... ...+...-.....+++.+.+. ++++-...+.|.+.+++... 
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-  117 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-  117 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-
Confidence            34578999999666665544 467888888865532 223333335688999998555 44555667899999987632 


Q ss_pred             CCCCCcceeeecccccceEEEEEeeCCCcEEEEee-CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458          144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (389)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  222 (389)
                            ........-.....|++.|.++.++++-. ..+.|...++.........     ...-.....+++++.++.++
T Consensus       118 ------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~-----~~~~~~P~Glald~~~~~LY  186 (619)
T 3s94_A          118 ------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-----NSEIYWPNGLTLDYEEQKLY  186 (619)
T ss_dssp             ------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-----CSSCSSEEEEEEETTTTEEE
T ss_pred             ------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE-----eCCCCCCcEEEEEccCCEEE
Confidence                  11122233345678899987645555542 2467877787654443333     22345678999998666666


Q ss_pred             EEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458          223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (389)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (389)
                      ++-...+.|..+|+.... ......+.......+++..+ .++++-...+.|...|..+++
T Consensus       187 ~aD~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          187 WADAKLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             EEETTTCCEEEESSSCCE-EC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred             EEeCCCCeEEEecCCCCc-cEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence            666667889988886432 11111111122345666544 333344455667777765543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.70  E-value=5.7e-05  Score=66.11  Aligned_cols=254  Identities=8%  Similarity=0.024  Sum_probs=146.5

Q ss_pred             cEEEEEEcCC-CCeEE-EEecCCcEEEEeCCCCCeeEEEeeCC---CcEEEEEE-------CCCCcEEEEecCCC-----
Q 016458           69 KVYSLDWTSE-RNRIV-SASQDGRLIVWNALTSQKTHAIKLPC---AWVMTCAF-------SPTGQSVACGGLDS-----  131 (389)
Q Consensus        69 ~v~~~~~~~~-~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~---~~v~~~~~-------~~~~~~l~~~~~dg-----  131 (389)
                      ....|+|+|. ...|+ +....+.|++.|..++..........   .....++|       ++++..|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            3668999983 44444 44444678889987766655444322   35899999       99999777665544     


Q ss_pred             --cEEEEeCCCCCCCCCCCcc---eeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC-------CCee------
Q 016458          132 --VCSIFNLNSPTDKDGNLPV---SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-------TGLR------  193 (389)
Q Consensus       132 --~i~vw~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~------  193 (389)
                        .|.+++.....    .+..   ...+.. -.....++.+|++..++++-..++.|..+|+.       ++..      
T Consensus       220 ~~~V~~i~r~~~G----~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          220 SPSVYIIKRNADG----TFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             EEEEEEEECCTTS----CCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             CceEEEEecCCCC----ceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence              25566533211    1110   011211 12345778899665777777788999999997       5543      


Q ss_pred             -----EEEecCcccCCCCCCeeEEEeeCCCCc-EEEEeeCCCceEEEeCCCCCcce---eEEeee---c-----------
Q 016458          194 -----TSVFGGEFQSGHTADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVASRAV---RTFHGH---E-----------  250 (389)
Q Consensus       194 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~---~-----------  250 (389)
                           ...+.   ..........++++| +++ ++++-+....|+.++.......+   ..+.+.   .           
T Consensus       295 ~~~g~~~~l~---~~~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~  370 (496)
T 3kya_A          295 NNPNTFKQLF---TIADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEAR  370 (496)
T ss_dssp             GCTTTEEEEE---ECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCB
T ss_pred             ccccccceeE---ecCCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccc
Confidence                 11110   022334567999999 666 45555567788886654321111   222221   0           


Q ss_pred             -cceE-EEEEe-------cCCCEEEEEecCCeEEEEECCCCceeeEeeccC-----------C--C------CCCCCeeE
Q 016458          251 -GDVN-TVKFF-------PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-----------G--E------NEIPHVTS  302 (389)
Q Consensus       251 -~~i~-~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~--~------~~~~~i~~  302 (389)
                       .... .++..       +++.++++-..+..|+.++ .++. +.++....           +  .      ........
T Consensus       371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~g  448 (496)
T 3kya_A          371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSG  448 (496)
T ss_dssp             CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEE
T ss_pred             cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcE
Confidence             1234 45554       4566667767788999999 4553 33333211           0  0      11234678


Q ss_pred             EEeCCC-CCEEEEEecCCcEEEEEcccceEEE
Q 016458          303 IAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVL  333 (389)
Q Consensus       303 ~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~  333 (389)
                      ++++++ |.++++=..+..|+.+++.......
T Consensus       449 Iavd~~~g~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          449 LVYDDVKEMFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred             EEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence            999986 6555555567788888876554443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.70  E-value=2.1e-05  Score=68.64  Aligned_cols=246  Identities=9%  Similarity=0.078  Sum_probs=139.5

Q ss_pred             cEEEEEECCC--CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC---C-eEE
Q 016458          111 WVMTCAFSPT--GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---Q-TCV  184 (389)
Q Consensus       111 ~v~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~i~  184 (389)
                      ....++|+|+  +..|+.+...+.|+.++..++.        ...+.........+++++++. ++++....   . .+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~--------v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~  210 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--------VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIY  210 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE--------EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEE
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE--------EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEE
Confidence            3568899984  4445555444889999986543        223333445688999999984 44444321   1 233


Q ss_pred             EEeCCCCee-EEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee--eccceEEEEEecC
Q 016458          185 LWDITTGLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPD  261 (389)
Q Consensus       185 iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~  261 (389)
                      ..+...+.. ...+      ........++++|.++.++++-..++.|+.+|..++ .....+..  .......++|+|+
T Consensus       211 ~~~~~~~~~~~~~~------~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g-~~~~~~~~~~~~~~~~~ia~dpd  283 (433)
T 4hw6_A          211 LFTRASGFTERLSL------CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG-TLTEEEVMMDTKGSNFHIVWHPT  283 (433)
T ss_dssp             EECGGGTTCCEEEE------EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC-CEEEEEEECSCCSSCEEEEECTT
T ss_pred             EEECCCCeeccccc------cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC-eEEEEEeccCCCCCcccEEEeCC
Confidence            333322211 0111      112345667888856667666667788999998755 33122211  1122346999999


Q ss_pred             CCEEEEE-ecCCeEEEEECCC--Cce--eeEeeccCC----------CCCCCCeeEEEe---------CCCCCEEEEEec
Q 016458          262 GNRFGTG-SDDGTCRLFDIRT--GHQ--LQVYYQQHG----------ENEIPHVTSIAF---------SISGRLLFAGYS  317 (389)
Q Consensus       262 ~~~l~~~-~~dg~i~i~d~~~--~~~--~~~~~~~~~----------~~~~~~i~~~~~---------~~~~~~l~~~~~  317 (389)
                      +++|+.+ ...+.|+.++...  +..  ...+.....          .........+++         .++|.++++-..
T Consensus       284 G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~  363 (433)
T 4hw6_A          284 GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD  363 (433)
T ss_dssp             SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC
Confidence            9955544 4678899988653  221  112211100          001223677999         777777666667


Q ss_pred             CCcEEEEEcccceEEEeecCcC-------------CCCCCCeeEEEEC-CCCCeEEeeeCCCeeEEeecceecc
Q 016458          318 NGDCYVWDTLLAKVVLNLGSLQ-------------NSHEGRITCLGLS-ADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       318 dg~i~i~d~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      ++.|+.++. ++..........             ...-.....|+++ ++|.++++=...+.|+.    .+++
T Consensus       364 n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~----i~~e  432 (433)
T 4hw6_A          364 SHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRK----IAPE  432 (433)
T ss_dssp             TTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEE----EEEC
T ss_pred             CCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEE----EecC
Confidence            788999985 554443331100             0112347789999 67766666556677777    6553

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.70  E-value=0.00018  Score=65.73  Aligned_cols=228  Identities=9%  Similarity=-0.020  Sum_probs=143.8

Q ss_pred             eEEEEecCCcEEEEeCCCCCeeEEEee-CCCcEEEEEECCCCcEEE-EecCCCcEEEEeCCCCCCCCCCCcceeeecccc
Q 016458           81 RIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK  158 (389)
Q Consensus        81 ~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  158 (389)
                      +|+.+ ..+.|+..++.+......+.. .-..+..++|++.+..|+ +-..++.|..++++...       .........
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-------~~~v~~~g~   79 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-------LEHVVEFGL   79 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEECSSC
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-------cEEEEeCCC
Confidence            44444 446799999987654444332 224688999999666655 44567889988887532       122222222


Q ss_pred             cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe-eCCCceEEEeCC
Q 016458          159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG-SCDSTARLWDTR  237 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~  237 (389)
                      .....+++.+.+++++++-...+.|.+.++.........     ...-.....+++.|..+.++++- +..+.|...++.
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~-----~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d  154 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV-----WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD  154 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEE-----CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEE-----eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC
Confidence            456788888776677777777889999998765443333     23334578999999566555553 225677777776


Q ss_pred             CCCcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458          238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (389)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (389)
                      ..  ....+...-.....+++++++..|+.+. ..+.|..+|+..... ..+....     .....+++.. + .|+.+.
T Consensus       155 G~--~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l-----~~P~glav~~-~-~ly~tD  224 (628)
T 4a0p_A          155 GS--ERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDL-----PHPFGLTQYQ-D-YIYWTD  224 (628)
T ss_dssp             SC--SCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECC-----SCEEEEEEET-T-EEEEEE
T ss_pred             CC--ceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccC-----CCceEEEEEC-C-EEEEec
Confidence            43  2333333445678999999776666554 567899999876444 3332211     1256777754 3 454444


Q ss_pred             -cCCcEEEEEcccceE
Q 016458          317 -SNGDCYVWDTLLAKV  331 (389)
Q Consensus       317 -~dg~i~i~d~~~~~~  331 (389)
                       ..+.|...|..+++.
T Consensus       225 ~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          225 WSRRSIERANKTSGQN  240 (628)
T ss_dssp             TTTTEEEEEETTTCCS
T ss_pred             CCCCEEEEEECCCCCc
Confidence             477888888766543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.67  E-value=6.6e-07  Score=82.97  Aligned_cols=233  Identities=11%  Similarity=0.002  Sum_probs=135.2

Q ss_pred             CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEe-cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE
Q 016458           88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY  166 (389)
Q Consensus        88 dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (389)
                      .+.|+..++.+......+.. ...+..++|++.+..|+.+ ...+.|+.+++........   ....+.........|++
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~---~~~~i~~~~~~P~glav  460 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---YDTVISRDIQAPDGLAV  460 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC---CCCBCCSCC--CCCEEC
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc---eEEEEeCCCCCcceEEE
Confidence            35788888776655433332 2346788999877666655 4467899999875210000   11111111123456777


Q ss_pred             eeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC-CceEEEeCCCCCcceeE
Q 016458          167 VPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-STARLWDTRVASRAVRT  245 (389)
Q Consensus       167 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~  245 (389)
                      .+.+.+++++-...+.|.++++........+     .........+++.|..+.++++-... +.|..+++...  ....
T Consensus       461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~-----~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~--~~~~  533 (699)
T 1n7d_A          461 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYS  533 (699)
T ss_dssp             CCSSSBCEECCTTTSCEEEEBSSSCCEEEEC-----CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC--CCCE
T ss_pred             EeeCCcEEEEeccCCeEEEEecCCCceEEEE-----eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC--CeeE
Confidence            7655566666667889999998766544443     22234567888988555555554333 67888777633  2222


Q ss_pred             Ee-eeccceEEEEEecCCCEEE-EEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEE
Q 016458          246 FH-GHEGDVNTVKFFPDGNRFG-TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV  323 (389)
Q Consensus       246 ~~-~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (389)
                      +. ..-...+.|+|+|++..|+ +-+..+.|..+++.... ...+....  ........+++..+ .++++....+.|..
T Consensus       534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~--~~~~~P~glavd~~-~lywtd~~~~~V~~  609 (699)
T 1n7d_A          534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDE--KRLAHPFSLAVFED-KVFWTDIINEAIFS  609 (699)
T ss_dssp             ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCS--SSCSSCCCCEEETT-EEEEECSTTTCEEE
T ss_pred             EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecC--CcCCCceEeEEECC-EEEEEeCCCCeEEE
Confidence            21 1223467899999755554 44567789999987433 33332211  01112345566443 34444456689999


Q ss_pred             EEcccceEEEee
Q 016458          324 WDTLLAKVVLNL  335 (389)
Q Consensus       324 ~d~~~~~~~~~~  335 (389)
                      ++..+++.+..+
T Consensus       610 ~d~~~G~~~~~i  621 (699)
T 1n7d_A          610 ANRLTGSDVNLL  621 (699)
T ss_dssp             EETTTEEEEECC
T ss_pred             EEccCCCceEEe
Confidence            998888887776

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.64  E-value=5.5e-05  Score=71.13  Aligned_cols=197  Identities=13%  Similarity=0.071  Sum_probs=107.5

Q ss_pred             cEEEEEEC-CCCcEEEEecC-C----CcEEEEeCCCC-CCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC---
Q 016458          111 WVMTCAFS-PTGQSVACGGL-D----SVCSIFNLNSP-TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---  180 (389)
Q Consensus       111 ~v~~~~~~-~~~~~l~~~~~-d----g~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---  180 (389)
                      .+...+|| |||++|+.+.. +    ..|+++|+.++ ...      ...+.   .....+.|+|++..++++...+   
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l------~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~  245 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI------ADKVS---GTNGEIVWGPDHTSLFYVTKDETLR  245 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC------CCCEE---EECSCCEECSSTTEEEEEEECTTCC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC------Ccccc---CceeeEEEecCCCEEEEEEECCCCC
Confidence            57788999 99998886533 2    25999999886 311      11111   1234678999985555544321   


Q ss_pred             -CeEEEEeCCCCee--EEEecCcccCCCCCCeeEEEeeCCCCcEEEEee---CCCceEEEeCCCCCcce--eEEe-eecc
Q 016458          181 -QTCVLWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAV--RTFH-GHEG  251 (389)
Q Consensus       181 -g~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~--~~~~-~~~~  251 (389)
                       ..|..+++.++..  ...+.    .........+.|+| ++++|+...   ....|+++|+..+....  ..+. ....
T Consensus       246 ~~~v~~~~lgt~~~~~~lv~~----~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~  320 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDVCLYE----EHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG  320 (751)
T ss_dssp             EEEEEEEETTSCGGGCEEEEE----CCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred             CCEEEEEECCCCchhcEEEEe----cCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence             3688889887642  22321    12233467889999 666665544   23468888987652222  3332 2334


Q ss_pred             ceEEEEEecCCCEEEEEe-cC----CeEEEEECCCCceeeE-eeccCCCCCCCCeeEEEeCCCCCEEEEEecCCc--EEE
Q 016458          252 DVNTVKFFPDGNRFGTGS-DD----GTCRLFDIRTGHQLQV-YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD--CYV  323 (389)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~-~d----g~i~i~d~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--i~i  323 (389)
                      ....+.|+. +..|+..+ .+    ..|..+|+.++..... +.....   ...+..+.+. .+.++++...+|.  |.+
T Consensus       321 ~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~---~~~l~~~~~~-~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          321 VRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSE---DVFMESIAVR-SNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             CCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCS---SEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred             ceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCC---CcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence            445555543 55554443 33    3677777764222122 211111   1124555554 2345556666775  555


Q ss_pred             EEc
Q 016458          324 WDT  326 (389)
Q Consensus       324 ~d~  326 (389)
                      +++
T Consensus       396 ~dl  398 (751)
T 2xe4_A          396 MMA  398 (751)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.61  E-value=0.00019  Score=67.26  Aligned_cols=224  Identities=10%  Similarity=-0.003  Sum_probs=133.6

Q ss_pred             CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC----eeEEEecCcccCCC
Q 016458          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG----LRTSVFGGEFQSGH  205 (389)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~  205 (389)
                      ...|+..++....       ... +......+..++|.+....++++-...+.|+.+++...    .....+     ...
T Consensus       403 ~~~Ir~i~l~~~~-------~~~-l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-----~~~  469 (791)
T 3m0c_C          403 RHEVRKMTLDRSE-------YTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-----SRD  469 (791)
T ss_dssp             BSSEEEECTTSCC-------CEE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-----CSS
T ss_pred             ccceeEeeccCCc-------cee-eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-----ecC
Confidence            3557777776532       122 22234567789999866566667777789999998753    222333     223


Q ss_pred             CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe-c-CCeEEEEECCCCc
Q 016458          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-D-DGTCRLFDIRTGH  283 (389)
Q Consensus       206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~  283 (389)
                      ......|++.+..++++++-...+.|.+.++... .....+.........|+++|.+.+|+... . .+.|...++....
T Consensus       470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~-~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~  548 (791)
T 3m0c_C          470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  548 (791)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC-eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc
Confidence            4556789998856677777777889999998754 22222223334578999999766666554 2 3689999987544


Q ss_pred             eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec-CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeee
Q 016458          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS  362 (389)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  362 (389)
                      .......     .......|++++.+..|+.+.. .+.|..+++........+..  ...-....+|++..+ .++++-.
T Consensus       549 ~~~lv~~-----~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~--~~~l~~P~glav~~~-~lYwtD~  620 (791)
T 3m0c_C          549 IYSLVTE-----NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--EKRLAHPFSLAVFED-KVFWTDI  620 (791)
T ss_dssp             EEEEECS-----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--TTTTSSEEEEEEETT-EEEEEET
T ss_pred             eEEEEeC-----CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC--CCccCCCCEEEEeCC-EEEEEEC
Confidence            3333221     1224789999987777777654 46799999865443333311  112234456776433 3334433


Q ss_pred             CCCeeEEeecceecccC
Q 016458          363 WDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       363 ~dg~i~i~~~~W~~~~~  379 (389)
                      ..+.|..    -+..+|
T Consensus       621 ~~~~I~~----~dk~tG  633 (791)
T 3m0c_C          621 INEAIFS----ANRLTG  633 (791)
T ss_dssp             TTTEEEE----EETTTC
T ss_pred             CCCEEEE----EeCCCC
Confidence            4566665    554455

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.59  E-value=0.0002  Score=60.54  Aligned_cols=270  Identities=10%  Similarity=0.161  Sum_probs=169.6

Q ss_pred             cCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE
Q 016458           87 QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY  166 (389)
Q Consensus        87 ~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (389)
                      .+..|.|.|+.++..+...+...   -+.-.+|..+.+|.-. ...+.|+|+++..       ......- ...|..-.|
T Consensus        46 ~~~~vvIiDl~~~~~~~rrpi~A---dsAIMnP~~~iiALra-g~~lQiFnle~K~-------klks~~~-~e~VvfWkW  113 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRPISA---DSAIMNPASKVIALKA-GKTLQIFNIEMKS-------KMKAHTM-TDDVTFWKW  113 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEECCC---SEEEECSSSSCEEEEE-TTEEEEEETTTTE-------EEEEEEC-SSCCCEEEE
T ss_pred             CCCeEEEEECCCCCcceeccccc---ceeeeCCCCcEEEEec-CCeEEEEchHHhh-------hhcceec-CCCceEEEe
Confidence            33478999998877664444332   2445688888887765 6789999998743       2222222 345666778


Q ss_pred             eeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEEeeCCCCcEEE-Eee------CCCceEEEeCCC
Q 016458          167 VPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGS------CDSTARLWDTRV  238 (389)
Q Consensus       167 ~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~------~dg~i~i~d~~~  238 (389)
                      ....  .|+..+ +..|+-|++... .+...+.... .-....|..-..++ +.++++ +|-      -.|.+.+|..+.
T Consensus       114 is~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~~-~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er  188 (494)
T 1bpo_A          114 ISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHS-SLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDR  188 (494)
T ss_dssp             EETT--EEEEEC-SSEEEEEESSSSCCCEEEEECCG-GGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred             cCCC--eEEEEc-CCeeEEecccCCCCchhheecch-hcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeeccc
Confidence            7754  444433 467999999753 4444553221 12245677777777 455544 332      247889999884


Q ss_pred             CCcceeEEeeeccceEEEEEecC---CCEEEEEecC---CeEEEEECCCC--------ceeeEeeccCCCCCCCCeeEEE
Q 016458          239 ASRAVRTFHGHEGDVNTVKFFPD---GNRFGTGSDD---GTCRLFDIRTG--------HQLQVYYQQHGENEIPHVTSIA  304 (389)
Q Consensus       239 ~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d---g~i~i~d~~~~--------~~~~~~~~~~~~~~~~~i~~~~  304 (389)
                        ...+.+.+|......+.+..+   ..+++.+...   +.+++.++...        +....+.... .....-..++.
T Consensus       189 --~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp-e~~~DFPvamq  265 (494)
T 1bpo_A          189 --KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP-EAQNDFPVAMQ  265 (494)
T ss_dssp             --CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCT-TSTTCCEEEEE
T ss_pred             --cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCc-ccccCceeEEE
Confidence              456677777766554444321   1244444432   78999998543        1111111111 11122356788


Q ss_pred             eCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccCc
Q 016458          305 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPW  384 (389)
Q Consensus       305 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~~  384 (389)
                      .++....++.-+.-|.|++||+.++..+..-    +-...+|..-+-+....=++.....|.|.-    -.+++..+.|+
T Consensus       266 vs~kygviyviTK~G~i~lyDleTgt~i~~n----rIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~----v~v~e~~ivpy  337 (494)
T 1bpo_A          266 ISEKHDVVFLITKYGYIHLYDLETGTCIYMN----RISGETIFVTAPHEATAGIIGVNRKGQVLS----VCVEEENIIPY  337 (494)
T ss_dssp             EETTTTEEEEEETTSEEEEEETTTCCEEEEE----ECCSSCEEEEEEETTTTEEEEEETTCEEEE----EEECTTTHHHH
T ss_pred             ecccCCEEEEEecCceEEEEecccceeeeee----cccCCceEEecccCCCCcEEEEccCceEEE----EEEccccchhh
Confidence            8888889999999999999999999999877    445556666665555555666678888876    77777777765

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.58  E-value=6.1e-05  Score=62.30  Aligned_cols=186  Identities=13%  Similarity=0.233  Sum_probs=119.8

Q ss_pred             cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC---CCc---EEEEeeC---CCceEEEeCCCCCcc
Q 016458          172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS---NSR---MFVSGSC---DSTARLWDTRVASRA  242 (389)
Q Consensus       172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~---~l~~~~~---dg~i~i~d~~~~~~~  242 (389)
                      .+++.....+-+.+||+ +++.+..+     ..  +.++.+..-|.   ++.   ++++...   +++|.+|++......
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~-----~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~  112 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSY-----NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEE-----CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEc-----cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence            45777777889999999 78888777     22  45677766651   111   3333333   578999977422233


Q ss_pred             eeEEee------ec-cceEEEEE--ecC-CC-EEEEEecCCeEEEEECC-------CCceeeEeeccCCCCCCCCeeEEE
Q 016458          243 VRTFHG------HE-GDVNTVKF--FPD-GN-RFGTGSDDGTCRLFDIR-------TGHQLQVYYQQHGENEIPHVTSIA  304 (389)
Q Consensus       243 ~~~~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~~~~~~i~~~~  304 (389)
                      +..+..      .. ..+..+|+  +|. +. ++++...+|.+..|++.       +.+.+..+....      .+-.+.
T Consensus       113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs------q~Egcv  186 (355)
T 3amr_A          113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS------QTEGMA  186 (355)
T ss_dssp             EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS------CEEEEE
T ss_pred             eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC------CcceEE
Confidence            444311      11 45677888  664 43 68888899999999983       223444444432      378889


Q ss_pred             eCCCCCEEEEEecCCcEEEEEcc-----cceEEEeecCcCCCCCCCeeEEEE--CCCCC-eEEeee-CCCeeEEeeccee
Q 016458          305 FSISGRLLFAGYSNGDCYVWDTL-----LAKVVLNLGSLQNSHEGRITCLGL--SADGS-ALCTGS-WDTNLKVNLGFWR  375 (389)
Q Consensus       305 ~~~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~-~l~~~~-~dg~i~i~~~~W~  375 (389)
                      ..+....|+++-++..|..++..     +++.+..+..  ......+..|++  .++++ +|++++ .+..+.+    |+
T Consensus       187 vDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~--g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~V----yd  260 (355)
T 3amr_A          187 ADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG--RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAI----YD  260 (355)
T ss_dssp             EETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS--SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE----EE
T ss_pred             EcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC--CccccCcceEEEEecCCCCEEEEEEcCCCCEEEE----EE
Confidence            99988999999998777777754     3445544421  222346888888  45655 566655 5778998    99


Q ss_pred             cc
Q 016458          376 VQ  377 (389)
Q Consensus       376 ~~  377 (389)
                      ..
T Consensus       261 r~  262 (355)
T 3amr_A          261 RQ  262 (355)
T ss_dssp             SS
T ss_pred             CC
Confidence            86

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.51  E-value=0.00012  Score=60.12  Aligned_cols=170  Identities=11%  Similarity=0.021  Sum_probs=110.6

Q ss_pred             ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCccc--CCCCCCeeEEEe---eCCCCcEEEEeeC---
Q 016458          156 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ--SGHTADVLSVSI---SGSNSRMFVSGSC---  227 (389)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~---~~~~~~~l~~~~~---  227 (389)
                      .......++.|.+....++++.-..+.|..||...+...........  ......+..+.+   .| .+.++++...   
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~a   88 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKS   88 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTT
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccc
Confidence            33444557789886645555555799999999986644433211100  011123578899   57 5777775442   


Q ss_pred             ----------CCceEEEeCC---CCCcceeEEe--eec-----------cceEEEEEecCCCEEEEEecC-CeEEEEECC
Q 016458          228 ----------DSTARLWDTR---VASRAVRTFH--GHE-----------GDVNTVKFFPDGNRFGTGSDD-GTCRLFDIR  280 (389)
Q Consensus       228 ----------dg~i~i~d~~---~~~~~~~~~~--~~~-----------~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~  280 (389)
                                +..|..||+.   ++ +.+....  ...           .....++..++|+..++++.. +.|..++..
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg-~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENS-KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTC-CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred             ccccccccCCCCEEEEEcCCcCCCC-CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence                      5779999998   55 3433332  111           247899999999999999988 888888866


Q ss_pred             CCceeeEeeccC-CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458          281 TGHQLQVYYQQH-GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (389)
Q Consensus       281 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (389)
                      .. ....+.... ........+.++++|+|+.|++....|.+..+|+..
T Consensus       168 G~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          168 GK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             SC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            43 333332211 111223478999999999888887799999999874

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.50  E-value=0.00031  Score=64.20  Aligned_cols=235  Identities=8%  Similarity=-0.024  Sum_probs=134.7

Q ss_pred             eEEEEecCCcEEEEeCCCCC-eeEEEeeCCCcEEEEEECCCCcEEEEe-cCCCcEEEEeCCCCCCCCCCCcceeeecccc
Q 016458           81 RIVSASQDGRLIVWNALTSQ-KTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK  158 (389)
Q Consensus        81 ~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  158 (389)
                      +|+-+. ...|+..++.... ...........+..++|++.+..|+.+ ...+.|..++++....      ....+...-
T Consensus        11 ~~~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~------~~~v~~~~~   83 (619)
T 3s94_A           11 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------VQNVVVSGL   83 (619)
T ss_dssp             CEEEEC-SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSC
T ss_pred             eEEEec-cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc------eEEEEeCCC
Confidence            344333 4578888887543 222222334568899999976666655 4467888888875310      112222222


Q ss_pred             cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCCceEEEeCC
Q 016458          159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTR  237 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~  237 (389)
                      .....+++.+.+.+++++-...+.|.+.++.........     ...-.....+++.|.++.++++-- ..+.|...++.
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~-----~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d  158 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF-----WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD  158 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEE-----eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC
Confidence            467889999876677777777899999999866544333     233445778999985565555532 23566666665


Q ss_pred             CCCcceeEEeeeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458          238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (389)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (389)
                      .. .........-.....+++++++..|+.+ ...+.|..+|+.............     .....+++..+ ..+++-.
T Consensus       159 G~-~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~-----~~P~gi~~~~~-~ly~td~  231 (619)
T 3s94_A          159 GS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSL-----PHPFALTLFED-ILYWTDW  231 (619)
T ss_dssp             SC-SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSS-EEEEECT
T ss_pred             CC-ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCC-----CCceEEEEeCC-EEEEecC
Confidence            33 2222222233457899999976666555 456789999987543332221111     12356777655 3333444


Q ss_pred             cCCcEEEEEcccceEEEe
Q 016458          317 SNGDCYVWDTLLAKVVLN  334 (389)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~  334 (389)
                      .++.|...|..+++....
T Consensus       232 ~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          232 STHSILACNKYTGEGLRE  249 (619)
T ss_dssp             TTCSEEEEESSSCCCCEE
T ss_pred             CCCEEEEEECCCCcccEE
Confidence            567899999877654433

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.49  E-value=1.9e-06  Score=79.96  Aligned_cols=225  Identities=9%  Similarity=-0.019  Sum_probs=126.7

Q ss_pred             CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC----CeeEEEecCcccCCC
Q 016458          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT----GLRTSVFGGEFQSGH  205 (389)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~  205 (389)
                      .+.|+..++....       ..... .....+..++|.+.+..++++-...+.|+.+++..    ......+     ...
T Consensus       385 ~~~I~~id~~~~~-------~~~~~-~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-----~~~  451 (699)
T 1n7d_A          385 RHEVRKMTLDRSE-------YTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-----SRD  451 (699)
T ss_dssp             TTC-CEECTTSCC-------EECCS-CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-----CSC
T ss_pred             ccceEEEeCCCCc-------ceeee-ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-----eCC
Confidence            3467777766532       11111 12234567889887655555556678899999875    1211111     111


Q ss_pred             CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-eeccceEEEEEecCCCEEEEEec-C-CeEEEEECCCC
Q 016458          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSD-D-GTCRLFDIRTG  282 (389)
Q Consensus       206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~  282 (389)
                      ......+++.+..++++++-...+.|.++++...  ....+. ........++++|.+.+|+.+.. . +.|..+++...
T Consensus       452 ~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~--~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~  529 (699)
T 1n7d_A          452 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV--KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  529 (699)
T ss_dssp             C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC--CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred             CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC--ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence            2335667887656677776666789999998743  222332 22245678999996655555442 2 67888887643


Q ss_pred             ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  361 (389)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  361 (389)
                      .. ..+...    .......|+|+|++..|+.+. ..+.|..+++........+..  .........|++..+ .++++.
T Consensus       530 ~~-~~l~~~----~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~~~P~glavd~~-~lywtd  601 (699)
T 1n7d_A          530 DI-YSLVTE----NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--EKRLAHPFSLAVFED-KVFWTD  601 (699)
T ss_dssp             CC-CEESCS----SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCC--SSSCSSCCCCEEETT-EEEEEC
T ss_pred             Ce-eEEEeC----CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEec--CCcCCCceEeEEECC-EEEEEe
Confidence            22 222111    112357899999866555554 556899999865333322210  111233445666554 455555


Q ss_pred             eCCCeeEEeecceecccCcc
Q 016458          362 SWDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       362 ~~dg~i~i~~~~W~~~~~~~  381 (389)
                      ...+.|..    ++..+|+.
T Consensus       602 ~~~~~V~~----~d~~~G~~  617 (699)
T 1n7d_A          602 IINEAIFS----ANRLTGSD  617 (699)
T ss_dssp             STTTCEEE----EETTTEEE
T ss_pred             CCCCeEEE----EEccCCCc
Confidence            56677877    77665543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.45  E-value=0.00023  Score=60.18  Aligned_cols=233  Identities=10%  Similarity=0.075  Sum_probs=122.6

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEE--Ee---eCCCcEEEEEECCC---CcEEEEecC-C-----Cc
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA--IK---LPCAWVMTCAFSPT---GQSVACGGL-D-----SV  132 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~--~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----g~  132 (389)
                      -.....++|.|+|+++++ ..+|.|++++  +++....  +.   ........++++|+   +..|+++.. .     +.
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            335679999999985554 5669999998  4432211  11   12346899999998   555554433 2     56


Q ss_pred             EEEEeCCCCCCCCCCCcceeeec---ccccceEEEEEeeCCCcEEEEeeC-------------CCeEEEEeCCCCe----
Q 016458          133 CSIFNLNSPTDKDGNLPVSRMLS---GHKGYVSCCQYVPDEDTHLITSSG-------------DQTCVLWDITTGL----  192 (389)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~----  192 (389)
                      |..|+....... ....+...+.   ........++|.|+| .++++.+.             .|.|..++....-    
T Consensus       107 v~r~~~~~~~~~-~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n  184 (352)
T 2ism_A          107 VVRLRHLGERGV-LDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN  184 (352)
T ss_dssp             EEEEEECSSCEE-EEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred             EEEEEeCCCCcC-ceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence            777777642100 0000111122   111123578999998 55555332             2566666654310    


Q ss_pred             --------eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCc--------eEEEeCCC---------------CCc
Q 016458          193 --------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST--------ARLWDTRV---------------ASR  241 (389)
Q Consensus       193 --------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--------i~i~d~~~---------------~~~  241 (389)
                              ....+.    .++ .....++|+|..+.++++-.....        |.+.....               ...
T Consensus       185 pf~~~~~~~~~i~a----~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~  259 (352)
T 2ism_A          185 PFLGRRGARPEVYS----LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD  259 (352)
T ss_dssp             TTTTCTTSCTTEEE----ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred             cccCCCCCCccEEE----EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence                    000000    112 235677888855565555333222        33332111               001


Q ss_pred             ceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce------eeEeeccCCCCCCCCeeEEEeCCCCCEEEEE
Q 016458          242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ------LQVYYQQHGENEIPHVTSIAFSISGRLLFAG  315 (389)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  315 (389)
                      ++..+. +......++| .+|.++++....+.|...++.....      ...+..     ....+..+++.|||.++++.
T Consensus       260 p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-----~~~rp~~v~~~pdG~lyv~~  332 (352)
T 2ism_A          260 PLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-----GFGRLREVQVGPDGALYVTT  332 (352)
T ss_dssp             CSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-----SSCCEEEEEECTTSCEEEEE
T ss_pred             CeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-----cCCCeeEEEECCCCcEEEEE
Confidence            222332 2234567777 4677766666777888887764431      122221     12348999999999766655


Q ss_pred             e
Q 016458          316 Y  316 (389)
Q Consensus       316 ~  316 (389)
                      .
T Consensus       333 ~  333 (352)
T 2ism_A          333 S  333 (352)
T ss_dssp             C
T ss_pred             e
Confidence            3

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.44  E-value=0.00032  Score=61.41  Aligned_cols=250  Identities=9%  Similarity=0.030  Sum_probs=140.8

Q ss_pred             EEEEEECCC-CcEEE-EecCCCcEEEEeCCCCCCCCCCCcceeeecc---cccceEEEEE-------eeCCCcEEEEeeC
Q 016458          112 VMTCAFSPT-GQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG---HKGYVSCCQY-------VPDEDTHLITSSG  179 (389)
Q Consensus       112 v~~~~~~~~-~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~~l~~~~~  179 (389)
                      ...|+|+|. ...|+ +-...+.|++.|+..+.       +......   .......++|       ++++..++++...
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~  213 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-------LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDY  213 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-------EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-------EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence            568999983 44444 44445678888887643       2222211   1235789999       9998544444444


Q ss_pred             CC------eEEEEeCCC-CeeE-----EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCC-------CCC
Q 016458          180 DQ------TCVLWDITT-GLRT-----SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR-------VAS  240 (389)
Q Consensus       180 dg------~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-------~~~  240 (389)
                      ++      .|.+++... +...     ..+.      .......++++|.++.++++-..++.|..+|+.       ++.
T Consensus       214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~  287 (496)
T 3kya_A          214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGG  287 (496)
T ss_dssp             CTTGGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTC
T ss_pred             CCCcccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCce
Confidence            32      366665443 1211     1221      112446778898677777777788899999987       332


Q ss_pred             c-----c-----eeEE-e-eeccceEEEEEecCCCEEEEE-ecCCeEEEEECCC--Cce--eeEeecc---CCC------
Q 016458          241 R-----A-----VRTF-H-GHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRT--GHQ--LQVYYQQ---HGE------  294 (389)
Q Consensus       241 ~-----~-----~~~~-~-~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~--~~~--~~~~~~~---~~~------  294 (389)
                      .     +     ...+ . +.......++|+|++++|+.+ +....|+.++...  +..  ...+...   .+.      
T Consensus       288 ~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~  367 (496)
T 3kya_A          288 SWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGT  367 (496)
T ss_dssp             CCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGG
T ss_pred             eecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccc
Confidence            1     0     1122 1 122346789999999965544 5677899866543  221  1122211   000      


Q ss_pred             -CCCCCee-EEEeC-------CCCCEEEEEecCCcEEEEEcccceEEEeecCc-------------------CCCCCCCe
Q 016458          295 -NEIPHVT-SIAFS-------ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL-------------------QNSHEGRI  346 (389)
Q Consensus       295 -~~~~~i~-~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------~~~~~~~v  346 (389)
                       ....... .++..       ++|.++++=..+.+|+.++ .++.........                   ....-...
T Consensus       368 ~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P  446 (496)
T 3kya_A          368 EARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDV  446 (496)
T ss_dssp             GCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSE
T ss_pred             ccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCC
Confidence             0111234 44554       4566666666778899998 455433222110                   00112357


Q ss_pred             eEEEECCC-CCeEEeeeCCCeeEEeecceecccC
Q 016458          347 TCLGLSAD-GSALCTGSWDTNLKVNLGFWRVQEG  379 (389)
Q Consensus       347 ~~~~~~~~-~~~l~~~~~dg~i~i~~~~W~~~~~  379 (389)
                      ..|+++++ |.++++=.....|+.    ++++..
T Consensus       447 ~gIavd~~~g~lyVaD~~N~rIrk----i~~~~~  476 (496)
T 3kya_A          447 SGLVYDDVKEMFYVHDQVGHTIRT----ISMEQE  476 (496)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEE----EEECCC
T ss_pred             cEEEEECCCCEEEEEeCCCCEEEE----EECCCC
Confidence            78999996 766666666778888    777653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.40  E-value=0.00029  Score=58.29  Aligned_cols=195  Identities=8%  Similarity=0.197  Sum_probs=121.3

Q ss_pred             CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCC----Cc---EEE-EecC--CCcEEEEeCCCCCCCCCCC
Q 016458           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT----GQ---SVA-CGGL--DSVCSIFNLNSPTDKDGNL  148 (389)
Q Consensus        79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~-~~~~--dg~i~vw~~~~~~~~~~~~  148 (389)
                      ..+++.....+-+.+||+ +|+.+..+..  +.++.+..-|+    |+   +++ +...  +++|.+|+++....   . 
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~---~-  112 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG---T-  112 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC---C-
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC---c-
Confidence            346666667788999999 8888888754  45666666552    22   223 3333  57899998753221   1 


Q ss_pred             cceeeec------ccc-cceEEEEE--eeCCC-cEEEEeeCCCeEEEEeCC-------CCeeEEEecCcccCCCCCCeeE
Q 016458          149 PVSRMLS------GHK-GYVSCCQY--VPDED-THLITSSGDQTCVLWDIT-------TGLRTSVFGGEFQSGHTADVLS  211 (389)
Q Consensus       149 ~~~~~~~------~~~-~~v~~~~~--~~~~~-~~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~~~~~v~~  211 (389)
                        .....      ... ..+..+++  +|... .++++...+|.+..|++.       +.+.+..+      .....+..
T Consensus       113 --l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f------~lgsq~Eg  184 (355)
T 3amr_A          113 --LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF------KMNSQTEG  184 (355)
T ss_dssp             --EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE------ECSSCEEE
T ss_pred             --eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe------cCCCCcce
Confidence              11111      011 45566777  55433 468888889999999983       23445555      23457888


Q ss_pred             EEeeCCCCcEEEEeeCCCceEEEeCCCCC----cceeEEe-ee-ccceEEEEEe--cCCC-EEEEEe-cCCeEEEEECC-
Q 016458          212 VSISGSNSRMFVSGSCDSTARLWDTRVAS----RAVRTFH-GH-EGDVNTVKFF--PDGN-RFGTGS-DDGTCRLFDIR-  280 (389)
Q Consensus       212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~-~~-~~~i~~~~~~--~~~~-~l~~~~-~dg~i~i~d~~-  280 (389)
                      +...+ ....|+.+-++..|..|+.+-..    ..+..+. ++ ...+..|++.  ++++ +|++++ .++.+.+||.. 
T Consensus       185 cvvDd-~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          185 MAADD-EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             EEEET-TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             EEEcC-CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence            88887 66788888888777777754221    2232221 11 2367888884  4555 666666 67799999996 


Q ss_pred             CCceeeEee
Q 016458          281 TGHQLQVYY  289 (389)
Q Consensus       281 ~~~~~~~~~  289 (389)
                      +.+.+..+.
T Consensus       264 ~~~~vg~f~  272 (355)
T 3amr_A          264 KNKYVADFR  272 (355)
T ss_dssp             TCCEEEEEE
T ss_pred             CCcEEEEEE
Confidence            555566654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.39  E-value=0.00015  Score=60.72  Aligned_cols=220  Identities=14%  Similarity=0.128  Sum_probs=115.5

Q ss_pred             CCCcEEEEeCCCCCCCCCCCcceee-ecccccceEEEEEeeC--CCcEEEEe-eC--CCeEEEEeCCCCeeEEEecCccc
Q 016458          129 LDSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPD--EDTHLITS-SG--DQTCVLWDITTGLRTSVFGGEFQ  202 (389)
Q Consensus       129 ~dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~--~~~~l~~~-~~--dg~i~iwd~~~~~~~~~~~~~~~  202 (389)
                      .+|.|.++|.++.......+..... +.........+.+.++  +..+|+.+ ..  +..|.+|++........+.....
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6889999998753211111111100 1112346677777763  43334443 32  46777877655322222211111


Q ss_pred             CCCCCCeeEEEeeCCCCcEEEEee-----------------CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEE
Q 016458          203 SGHTADVLSVSISGSNSRMFVSGS-----------------CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF  265 (389)
Q Consensus       203 ~~~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  265 (389)
                      ...-...+.+.+.+ ++.++++..                 ..|.|.-+|..   . +..+...-...+.++|+||++.|
T Consensus       161 g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~---~-~~~~~~~l~~pNGia~spDg~~l  235 (355)
T 3sre_A          161 HKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN---D-VRVVAEGFDFANGINISPDGKYV  235 (355)
T ss_dssp             CTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT---C-CEEEEEEESSEEEEEECTTSSEE
T ss_pred             cCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC---e-EEEeecCCcccCcceECCCCCEE
Confidence            22345678899998 777766643                 12455555542   2 23333334457899999999887


Q ss_pred             EEEe-cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC-CCCEEEEEecC-CcEEEEEcc--cceEEEeecCcCC
Q 016458          266 GTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSN-GDCYVWDTL--LAKVVLNLGSLQN  340 (389)
Q Consensus       266 ~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d-g~i~i~d~~--~~~~~~~~~~~~~  340 (389)
                      +++. ..+.|..|++.....+........   ....-.+++.+ +|++.+++..+ +.|..|+..  .+..+..+... .
T Consensus       236 Yvadt~~~~I~~~~~~~~g~l~~~~~~~~---~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~-~  311 (355)
T 3sre_A          236 YIAELLAHKIHVYEKHANWTLTPLRVLSF---DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDI-L  311 (355)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEC---SSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECT-T
T ss_pred             EEEeCCCCeEEEEEECCCCcEecCEEEeC---CCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEcc-C
Confidence            7665 578899999864222211111110   12367889999 59877766544 345445543  24445444321 1


Q ss_pred             CCCCCeeEEEECCCCCeE
Q 016458          341 SHEGRITCLGLSADGSAL  358 (389)
Q Consensus       341 ~~~~~v~~~~~~~~~~~l  358 (389)
                      .....|..+ |..||+.+
T Consensus       312 ~~~~~v~~v-~~ddG~~l  328 (355)
T 3sre_A          312 SEEPKVTVV-YAENGTVL  328 (355)
T ss_dssp             SSSCEEEEE-EEECSSSC
T ss_pred             CCCcEEEEE-EEcCCCEE
Confidence            123344444 44466643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.34  E-value=0.00077  Score=55.33  Aligned_cols=208  Identities=9%  Similarity=-0.032  Sum_probs=124.1

Q ss_pred             CcEEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCeeEEEeeCC--------CcEEEEEE---CCCCcEEEEec-------
Q 016458           68 GKVYSLDWTSERNRIVSAS-QDGRLIVWNALTSQKTHAIKLPC--------AWVMTCAF---SPTGQSVACGG-------  128 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~--------~~v~~~~~---~~~~~~l~~~~-------  128 (389)
                      ----+++|++....|..++ ..++|..|+...+..... ....        ..+..+.|   .|+++++++..       
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            3345789988655666555 789999999876654433 2221        13688999   68887777543       


Q ss_pred             ------CCCcEEEEeCC---CCCCCCCCCcceeeeccc-----------ccceEEEEEeeCCCcEEEEeeCC-CeEEEEe
Q 016458          129 ------LDSVCSIFNLN---SPTDKDGNLPVSRMLSGH-----------KGYVSCCQYVPDEDTHLITSSGD-QTCVLWD  187 (389)
Q Consensus       129 ------~dg~i~vw~~~---~~~~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd  187 (389)
                            .+..+..||+.   +++     ......+...           ......++..++| +..++++.. +.|...+
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~-----~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~  165 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSK-----PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVS  165 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCC-----CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEEC
T ss_pred             cccccCCCCEEEEEcCCcCCCCC-----EEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEe
Confidence                  25779999988   433     1112222211           1347899999998 677778877 8888888


Q ss_pred             CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe--ee---ccceEEE-EEecC
Q 016458          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GH---EGDVNTV-KFFPD  261 (389)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~---~~~i~~~-~~~~~  261 (389)
                      ......................+.++++| ++++|++....|.|..+|++..........  +.   -.....+ ..-.+
T Consensus       166 pdG~~~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~  244 (334)
T 2p9w_A          166 ADGKTVSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVG  244 (334)
T ss_dssp             TTSCCEEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEET
T ss_pred             CCCCEEeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccC
Confidence            76543322221110012233477999999 666666665699999999985421001111  21   1123343 33347


Q ss_pred             CCE-EEEEecCCeEEEEECCCCc
Q 016458          262 GNR-FGTGSDDGTCRLFDIRTGH  283 (389)
Q Consensus       262 ~~~-l~~~~~dg~i~i~d~~~~~  283 (389)
                      |+. +++....+.+.+.+....+
T Consensus       245 G~vllV~~~~~~~~~l~S~DgW~  267 (334)
T 2p9w_A          245 NESVLVGARAPYAISFRSWDNWK  267 (334)
T ss_dssp             TEEEEEEEETTEEEEEECSSTTS
T ss_pred             CEEEEEEcCCCCEEEEECCCCcc
Confidence            777 4555556667776655543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.33  E-value=0.001  Score=56.27  Aligned_cols=234  Identities=10%  Similarity=0.011  Sum_probs=124.3

Q ss_pred             CCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeee---cccccceEEEEEeeC---CCcEEEEeeC---
Q 016458          109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML---SGHKGYVSCCQYVPD---EDTHLITSSG---  179 (389)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~~l~~~~~---  179 (389)
                      -.....++|.|+|+++++ ..+|.|.+++... .      .....+   .........|+++|+   +..++++-+.   
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G-~------~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~   99 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISPSG-K------KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE   99 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEECSSC-E------EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEeCCC-c------eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence            345789999999985554 5568998886322 1      111111   112345789999997   4344444332   


Q ss_pred             C----CeEEEEeCCCC--ee--EEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-------------CCceEEEeCCC
Q 016458          180 D----QTCVLWDITTG--LR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-------------DSTARLWDTRV  238 (389)
Q Consensus       180 d----g~i~iwd~~~~--~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~  238 (389)
                      +    ..|..|+....  ..  ...+..............++|.| ++.++++.+.             .|.|.-++...
T Consensus       100 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG  178 (354)
T 3a9g_A          100 GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG  178 (354)
T ss_dssp             GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS
T ss_pred             CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC
Confidence            3    67888887654  11  11110000011112346789998 7777766432             24455555432


Q ss_pred             CC-------cceeEEeeeccceEEEEEec-CCCEEEEEecCC---eEEEEECCCCc------------------eeeEee
Q 016458          239 AS-------RAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDG---TCRLFDIRTGH------------------QLQVYY  289 (389)
Q Consensus       239 ~~-------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~------------------~~~~~~  289 (389)
                      .-       .......++.. ...++|+| ++.++++-...+   .|.+..  .+.                  +...+.
T Consensus       179 ~~p~~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~  255 (354)
T 3a9g_A          179 RPPADNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG  255 (354)
T ss_dssp             CCCTTSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred             CCCCCCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC
Confidence            10       01111223333 46899999 666555433222   233322  111                  011110


Q ss_pred             ccCCCCCCCCeeEEEeC-------CCCCEEEEEecCCcEEEEEcccc-eEE--EeecCcCCCCCCCeeEEEECCCCCeEE
Q 016458          290 QQHGENEIPHVTSIAFS-------ISGRLLFAGYSNGDCYVWDTLLA-KVV--LNLGSLQNSHEGRITCLGLSADGSALC  359 (389)
Q Consensus       290 ~~~~~~~~~~i~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~  359 (389)
                           ........++|.       .+|.++++....+.|...++... +..  ..+.   ......+..+++.|||.+.+
T Consensus       256 -----~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~---~~~~~rp~~v~~~pDG~lyv  327 (354)
T 3a9g_A          256 -----SETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF---KNVFGRLRDVVIDDDGGILI  327 (354)
T ss_dssp             -----TCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC---TTTSCCEEEEEECTTSCEEE
T ss_pred             -----CCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec---cCCCCCeeEEEECCCCcEEE
Confidence                 011236778883       46777777666778988888753 322  2221   22346789999999997666


Q ss_pred             eee
Q 016458          360 TGS  362 (389)
Q Consensus       360 ~~~  362 (389)
                      +..
T Consensus       328 ~~~  330 (354)
T 3a9g_A          328 STS  330 (354)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.28  E-value=0.00092  Score=56.54  Aligned_cols=231  Identities=14%  Similarity=0.088  Sum_probs=121.2

Q ss_pred             CCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCccee---eecccccceEEEEEeeC---CCcEEEEeeCC--
Q 016458          109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR---MLSGHKGYVSCCQYVPD---EDTHLITSSGD--  180 (389)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~---~~~~l~~~~~d--  180 (389)
                      -.....++|.|+|+++++ ..+|.|.+++ .. .     .....   ...........++++|+   +..++++-...  
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g-~-----~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~  101 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR-EG-R-----LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG  101 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE-TT-E-----EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE-CC-C-----ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC
Confidence            345789999999985555 5569999988 22 1     00111   11112346789999997   43444444432  


Q ss_pred             ---CeEEEEeCCCCee-----E-EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-------------CCceEEEeCCC
Q 016458          181 ---QTCVLWDITTGLR-----T-SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-------------DSTARLWDTRV  238 (389)
Q Consensus       181 ---g~i~iwd~~~~~~-----~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~  238 (389)
                         +.|..++...+..     + ..++..  .........++|.| ++.++++.+.             .|.|.-++...
T Consensus       102 ~~~~~v~r~~~~~~~~~~~~~l~~~~p~~--~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG  178 (352)
T 2ism_A          102 GLRNQVVRLRHLGERGVLDRVVLDGIPAR--PHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEG  178 (352)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEEEEEECCC--TTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred             CCccEEEEEEeCCCCcCceEEEEEeCCCC--CCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence               6788888775421     1 112100  01112346899999 6677666432             14555565542


Q ss_pred             C------------CcceeEEeeeccceEEEEEec-CCCEEEEEecCCeE------EEEECCCCc----------------
Q 016458          239 A------------SRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTC------RLFDIRTGH----------------  283 (389)
Q Consensus       239 ~------------~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i------~i~d~~~~~----------------  283 (389)
                      .            ........++. ....++|+| ++.++++-.....+      .+.-+..+.                
T Consensus       179 ~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~  257 (352)
T 2ism_A          179 EPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRY  257 (352)
T ss_dssp             SBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTS
T ss_pred             CCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCC
Confidence            0            01111122333 357799999 66655544333321      122222221                


Q ss_pred             --eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE------EEeecCcCCCCCCCeeEEEECCCC
Q 016458          284 --QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV------VLNLGSLQNSHEGRITCLGLSADG  355 (389)
Q Consensus       284 --~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~  355 (389)
                        +...+      ........++| .+|.++++....+.|...++.....      ...+.    .....+..+++.|||
T Consensus       258 ~~p~~~~------~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~----~~~~rp~~v~~~pdG  326 (352)
T 2ism_A          258 RDPLYFW------PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL----SGFGRLREVQVGPDG  326 (352)
T ss_dssp             CCCSEEC------TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE----ESSCCEEEEEECTTS
T ss_pred             cCCeEec------CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec----ccCCCeeEEEECCCC
Confidence              00010      00112467777 4666666665667788877764321      11221    123578999999999


Q ss_pred             CeEEeee
Q 016458          356 SALCTGS  362 (389)
Q Consensus       356 ~~l~~~~  362 (389)
                      .++++..
T Consensus       327 ~lyv~~~  333 (352)
T 2ism_A          327 ALYVTTS  333 (352)
T ss_dssp             CEEEEEC
T ss_pred             cEEEEEe
Confidence            8776654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.25  E-value=0.00034  Score=57.81  Aligned_cols=232  Identities=12%  Similarity=0.145  Sum_probs=116.1

Q ss_pred             CCCeEEEEe-cC-----CcEEEEeCCCCCeeEEEeeCC--CcEEEEEECCCCcEEEEecCC-----CcEEEEeCCCCCCC
Q 016458           78 ERNRIVSAS-QD-----GRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSVACGGLD-----SVCSIFNLNSPTDK  144 (389)
Q Consensus        78 ~~~~l~~~~-~d-----g~v~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~  144 (389)
                      ++.+++.|+ .+     ..+.+||..+.+-...-..+.  .....+.  .++..++.|+.+     ..+.+||..+... 
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~-   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED-   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT-
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC-
Confidence            344556665 32     368888887664322111111  1112222  357777777754     4688888876430 


Q ss_pred             CCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC-----CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458          145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (389)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (389)
                       ..+.....+.........+.+  + +.+++.|+.+     ..+.+||+.+.+-...-..    .....-.+++..  ++
T Consensus        91 -~~W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~----p~~r~~~~~~~~--~~  160 (301)
T 2vpj_A           91 -GVWYSVAPMNVRRGLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM----QTAREGAGLVVA--SG  160 (301)
T ss_dssp             -CCCEEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC----SSCCBSCEEEEE--TT
T ss_pred             -CeeEECCCCCCCccceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCC----CCCcccceEEEE--CC
Confidence             002222222111111222222  3 3677777654     3688999988765443211    111112223333  56


Q ss_pred             cEEEEeeCC-----CceEEEeCCCCCcceeEEeeeccc--eEEEEEecCCCEEEEEecC-----CeEEEEECCCCceeeE
Q 016458          220 RMFVSGSCD-----STARLWDTRVASRAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQV  287 (389)
Q Consensus       220 ~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~  287 (389)
                      .+++.|+.+     ..+..||+.+.  ....+.....+  -.+++. -++++++.|+.+     ..+.+||+.+.+-...
T Consensus       161 ~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  237 (301)
T 2vpj_A          161 VIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV  237 (301)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             EEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEEC
Confidence            778887754     45888898754  12222111111  112222 266777777764     4689999987654332


Q ss_pred             eeccCCCCCCCCeeEEEeCCCCCEEEEEecC-----CcEEEEEcccce
Q 016458          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAK  330 (389)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  330 (389)
                      -.....   ......+.+  ++++++.|+.+     ..+.+||..+.+
T Consensus       238 ~~~p~~---r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          238 TSMTTP---RCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             CCCSSC---CBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CCCCCc---ccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            211111   111222233  66777777665     357888887654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.24  E-value=0.0035  Score=59.12  Aligned_cols=292  Identities=11%  Similarity=0.040  Sum_probs=156.2

Q ss_pred             cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC
Q 016458           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL  148 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  148 (389)
                      .|.++...+++..|..|+. +-+..+|..+++...........|.++....+|.+.+. +.+ -+.+++......     
T Consensus       192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~~~-----  263 (758)
T 3ott_A          192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTTPL-----  263 (758)
T ss_dssp             CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTSCC-----
T ss_pred             eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCCcE-----
Confidence            4888888877765555654 35888887766543322223345888888877776554 444 477777655321     


Q ss_pred             cceeee-----cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEE
Q 016458          149 PVSRML-----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV  223 (389)
Q Consensus       149 ~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  223 (389)
                      ......     .-....|.++....++  .|-.|+..| +.++.....-................|.++.... ++.+.+
T Consensus       264 ~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~-~g~lWi  339 (758)
T 3ott_A          264 QHIIHDSRNIQSLTNNIIWNIFADQEH--NIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDS-KGFYWF  339 (758)
T ss_dssp             EEECCCTTCTTSCSCSCEEEEEECTTC--CEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECT-TCCEEE
T ss_pred             EEEEcCCCCcCcCCcCeEEEEEEcCCC--CEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcC-CCCEEE
Confidence            000000     0123457887766655  356666667 5444332211111110000012234678887765 555544


Q ss_pred             EeeCCCceEEEeCCCCC-cceeEEee-------eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCC-
Q 016458          224 SGSCDSTARLWDTRVAS-RAVRTFHG-------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-  294 (389)
Q Consensus       224 ~~~~dg~i~i~d~~~~~-~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-  294 (389)
                       |+.+| +..++..+.. .....+..       ....|.++.-..++.+. .|+ ++-|..||..+++... +...... 
T Consensus       340 -Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt-~~GL~~~~~~~~~~~~-~~~~~~~~  414 (758)
T 3ott_A          340 -GGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLW-IAT-DGSINRYDYATRQFIH-YNIVDNTG  414 (758)
T ss_dssp             -EETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEE-EEE-TTEEEEEETTTTEEEE-EEEECCC-
T ss_pred             -eeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEE-EEe-CCcHhhcCcCCCcEEE-eecCCCcC
Confidence             45554 6666655321 11222210       12357888877777644 455 4579999987764332 2211111 


Q ss_pred             -CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc-----eEE---EeecCcCCCCCCCeeEEEECCCCCeEEe-eeCC
Q 016458          295 -NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-----KVV---LNLGSLQNSHEGRITCLGLSADGSALCT-GSWD  364 (389)
Q Consensus       295 -~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d  364 (389)
                       .....|.++...++|+ |.+|+..+-|..+|..+.     ...   ..+..........|.++..+++|.+.+. ++..
T Consensus       415 ~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~  493 (758)
T 3ott_A          415 TYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNK  493 (758)
T ss_dssp             -CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCS
T ss_pred             CCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCC
Confidence             1123478888777765 455666667889986531     111   1111000112346899999999987763 4444


Q ss_pred             CeeEEeecceecccCcccC
Q 016458          365 TNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       365 g~i~i~~~~W~~~~~~~~~  383 (389)
                      | +..    ++..+++...
T Consensus       494 G-l~~----~d~~~~~~~~  507 (758)
T 3ott_A          494 G-IDK----INPRTREVTK  507 (758)
T ss_dssp             S-EEE----EETTTTEEEE
T ss_pred             C-cEE----EeCCCCceEE
Confidence            5 555    7777665544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.23  E-value=0.0017  Score=54.93  Aligned_cols=236  Identities=11%  Similarity=0.041  Sum_probs=124.3

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC-eeEEEe---eCCCcEEEEEECCC---CcEEEEecC----C----C
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-KTHAIK---LPCAWVMTCAFSPT---GQSVACGGL----D----S  131 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----g  131 (389)
                      -.....|+|.|+|++++ +..+|.|++++ .+++ .+..+.   ........++++|+   +..|+++..    +    +
T Consensus        28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            34578999999997544 55669999997 4454 111111   12345889999997   455544432    2    5


Q ss_pred             cEEEEeCCCCCCCCCCCc-ceeeec-ccccceEEEEEeeCCCcEEEEeeC-------------CCeEEEEeCCCC-----
Q 016458          132 VCSIFNLNSPTDKDGNLP-VSRMLS-GHKGYVSCCQYVPDEDTHLITSSG-------------DQTCVLWDITTG-----  191 (389)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~-----  191 (389)
                      .|..|+............ +...+. ........+.|.|++ .++++.+.             .|.|..++....     
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n  184 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN  184 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence            677777664310000000 111111 111124568999998 45555332             255666665432     


Q ss_pred             ----eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC---ceEEEeCCC---------------CCcceeEEeee
Q 016458          192 ----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS---TARLWDTRV---------------ASRAVRTFHGH  249 (389)
Q Consensus       192 ----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~---------------~~~~~~~~~~~  249 (389)
                          ..+..      .++ .....++|+|..+.++++-....   .|.+.....               ...++..+...
T Consensus       185 pf~~~~i~a------~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~  257 (354)
T 3a9g_A          185 PFPNSPIWS------YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSE  257 (354)
T ss_dssp             SSTTCCEEE------ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred             CCCCCcEEE------Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCC
Confidence                01111      122 23567889985555555432221   233322110               00122232112


Q ss_pred             ccceEEEEEe-------cCCCEEEEEecCCeEEEEECCCC-cee--eEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458          250 EGDVNTVKFF-------PDGNRFGTGSDDGTCRLFDIRTG-HQL--QVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (389)
Q Consensus       250 ~~~i~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~-~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (389)
                      ......++|.       .++.++++.-..+.|...++... ...  ..+..    .....+..+++.|||.+.++..
T Consensus       258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~----~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK----NVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT----TTSCCEEEEEECTTSCEEEEEC
T ss_pred             CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc----CCCCCeeEEEECCCCcEEEEEe
Confidence            2356788884       46777777767788988888753 221  12211    1123588999999997665553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.22  E-value=0.00064  Score=56.15  Aligned_cols=188  Identities=13%  Similarity=0.132  Sum_probs=97.6

Q ss_pred             CcEEEEeeCC-----CeEEEEeCCCCe---eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC-----ceEEEeCC
Q 016458          171 DTHLITSSGD-----QTCVLWDITTGL---RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-----TARLWDTR  237 (389)
Q Consensus       171 ~~~l~~~~~d-----g~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~  237 (389)
                      +.+++.|+.+     ..+.+||+.+..   -...-..    .....-.+++..  ++.+++.|+.++     .+.+||+.
T Consensus        63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~----p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~  136 (301)
T 2vpj_A           63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPM----NVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPN  136 (301)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCC----SSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred             CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCC----CCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCC
Confidence            3677777754     468999998876   3333211    111112223333  567778777543     57888887


Q ss_pred             CCCcceeEEeeeccc--eEEEEEecCCCEEEEEecC-----CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC
Q 016458          238 VASRAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR  310 (389)
Q Consensus       238 ~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  310 (389)
                      +..  ...+.....+  -.+++. .++++++.|+.+     ..+.+||+.+.+-...-....   .......+.+  +++
T Consensus       137 ~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~---~r~~~~~~~~--~~~  208 (301)
T 2vpj_A          137 IDQ--WSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMAT---KRSGAGVALL--NDH  208 (301)
T ss_dssp             TTE--EEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSS---CCBSCEEEEE--TTE
T ss_pred             CCe--EEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCc---ccccceEEEE--CCE
Confidence            541  2222211111  112222 267777777754     458899988765433211111   1111122222  567


Q ss_pred             EEEEEecC-----CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC-----eeEEeecceecccCc
Q 016458          311 LLFAGYSN-----GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-----NLKVNLGFWRVQEGA  380 (389)
Q Consensus       311 ~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~~~~W~~~~~~  380 (389)
                      +++.|+.+     ..+.+||+.+.+-...- ....... ....+.+  ++++++.|+.++     .+.+    +|+.+.+
T Consensus       209 i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~-~~~~~~~--~~~i~v~GG~~~~~~~~~v~~----yd~~~~~  280 (301)
T 2vpj_A          209 IYVVGGFDGTAHLSSVEAYNIRTDSWTTVT-SMTTPRC-YVGATVL--RGRLYAIAGYDGNSLLSSIEC----YDPIIDS  280 (301)
T ss_dssp             EEEECCBCSSSBCCCEEEEETTTTEEEEEC-CCSSCCB-SCEEEEE--TTEEEEECCBCSSSBEEEEEE----EETTTTE
T ss_pred             EEEEeCCCCCcccceEEEEeCCCCcEEECC-CCCCccc-ceeEEEE--CCEEEEEcCcCCCcccccEEE----EcCCCCe
Confidence            77777654     46899999876543322 1111111 1122222  677888887663     3455    7776654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.17  E-value=0.00057  Score=56.47  Aligned_cols=228  Identities=13%  Similarity=0.147  Sum_probs=113.7

Q ss_pred             CeEEEEecC----CcEEEEeCCCCCeeEEEeeCC--CcEEEEEECCCCcEEEEecCC-----CcEEEEeCCCCCCCCCCC
Q 016458           80 NRIVSASQD----GRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSVACGGLD-----SVCSIFNLNSPTDKDGNL  148 (389)
Q Consensus        80 ~~l~~~~~d----g~v~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~  148 (389)
                      .+++.|+.+    ..+..||..+.+-...-..+.  ..-..+.+  ++..++.|+.+     ..+.+||..+..     +
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~-----W   89 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQ-----W   89 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTE-----E
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCc-----e
Confidence            345555533    357888887664322211111  11122222  67777777754     357888877633     1


Q ss_pred             cceeeecccccceEEEEEeeCCCcEEEEeeCCC-----eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEE
Q 016458          149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-----TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV  223 (389)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  223 (389)
                      .....+.........+.+  + +.+++.|+.++     .+.+||+.+..-...-..    .....-.+++..  ++.+++
T Consensus        90 ~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~----p~~r~~~~~~~~--~~~iyv  160 (302)
T 2xn4_A           90 TSVANMRDRRSTLGAAVL--N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM----NTRRSSVGVGVV--GGLLYA  160 (302)
T ss_dssp             EEECCCSSCCBSCEEEEE--T-TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC----SSCCBSCEEEEE--TTEEEE
T ss_pred             eeCCCCCccccceEEEEE--C-CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC----CCcccCceEEEE--CCEEEE
Confidence            111111111111122222  3 36777777553     578899988765444211    111112233333  567777


Q ss_pred             EeeCC-------CceEEEeCCCCCcceeEEeeeccc--eEEEEEecCCCEEEEEecC-----CeEEEEECCCCceeeEee
Q 016458          224 SGSCD-------STARLWDTRVASRAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYY  289 (389)
Q Consensus       224 ~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~  289 (389)
                      .|+.+       ..+.+||+.+.  ....+.....+  -.+++. -++++++.|+.+     ..+.+||+.+.+-...-.
T Consensus       161 ~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~  237 (302)
T 2xn4_A          161 VGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD  237 (302)
T ss_dssp             ECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC
T ss_pred             EeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC
Confidence            77653       35888998754  11122111111  112222 267777888764     368999988764333221


Q ss_pred             ccCCCCCCCCeeEEEeCCCCCEEEEEecCC-----cEEEEEcccceE
Q 016458          290 QQHGENEIPHVTSIAFSISGRLLFAGYSNG-----DCYVWDTLLAKV  331 (389)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~  331 (389)
                      .....   .....+.  .++++++.|+.++     .+.+||..+.+-
T Consensus       238 ~~~~r---~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          238 MNMCR---RNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             CSSCC---BSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCCcc---ccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence            11111   1112222  2667777777653     589999887654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.15  E-value=0.0011  Score=55.60  Aligned_cols=190  Identities=11%  Similarity=0.077  Sum_probs=108.4

Q ss_pred             ceEEEEEeeCCCcEEEEee-------------CCCeEEEEeCCCC-eeEEEecCcc--cCCCCCCeeEEEeeCC-CC--c
Q 016458          160 YVSCCQYVPDEDTHLITSS-------------GDQTCVLWDITTG-LRTSVFGGEF--QSGHTADVLSVSISGS-NS--R  220 (389)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~-------------~dg~i~iwd~~~~-~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~--~  220 (389)
                      ..-++...|+|  ++++++             .+|.|.++|+.+. .....+....  .....-....+.+.++ ++  .
T Consensus        51 G~EDi~~~~~G--~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~  128 (355)
T 3sre_A           51 GSEDLEILPNG--LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY  128 (355)
T ss_dssp             CCCEEEECTTS--EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred             CcceeEEcCCC--eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence            34556667765  344443             6899999998742 1122221100  0112345677777552 22  3


Q ss_pred             EEEEeeC--CCceEEEeCCCCCcceeEE---eee-ccceEEEEEecCCCEEEEEe-----------------cCCeEEEE
Q 016458          221 MFVSGSC--DSTARLWDTRVASRAVRTF---HGH-EGDVNTVKFFPDGNRFGTGS-----------------DDGTCRLF  277 (389)
Q Consensus       221 ~l~~~~~--dg~i~i~d~~~~~~~~~~~---~~~-~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~i~  277 (389)
                      ++++-..  +..|.+|++.........+   .+. -...+.+.+.++|.+.++..                 ..|.|..+
T Consensus       129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~  208 (355)
T 3sre_A          129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  208 (355)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence            4454333  4678888776543322222   211 13478999999998777654                 12456666


Q ss_pred             ECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEccc-ceE--EEeecCcCCCCCCCeeEEEECC
Q 016458          278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLL-AKV--VLNLGSLQNSHEGRITCLGLSA  353 (389)
Q Consensus       278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~--~~~~~~~~~~~~~~v~~~~~~~  353 (389)
                      |.  ++ .........     ..+.++|+||++.|+++. ..+.|..|++.. +..  ...+     ...+..-.+++++
T Consensus       209 d~--~~-~~~~~~~l~-----~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-----~~~g~PDGi~vD~  275 (355)
T 3sre_A          209 SP--ND-VRVVAEGFD-----FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-----SFDTLVDNISVDP  275 (355)
T ss_dssp             CT--TC-CEEEEEEES-----SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-----ECSSEEEEEEECT
T ss_pred             EC--Ce-EEEeecCCc-----ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-----eCCCCCceEEEeC
Confidence            54  22 222222111     268999999999887765 467899999863 322  1222     1245678899999


Q ss_pred             -CCCeEEeeeCC
Q 016458          354 -DGSALCTGSWD  364 (389)
Q Consensus       354 -~~~~l~~~~~d  364 (389)
                       +|.+.+++..+
T Consensus       276 e~G~lwva~~~~  287 (355)
T 3sre_A          276 VTGDLWVGCHPN  287 (355)
T ss_dssp             TTCCEEEEEESC
T ss_pred             CCCcEEEEecCC
Confidence             59888777644

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.09  E-value=0.0059  Score=55.88  Aligned_cols=158  Identities=11%  Similarity=0.025  Sum_probs=96.4

Q ss_pred             CCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE-eeeccceEEEEEec-CCCEEEEEecCC--eEEEEECCCC
Q 016458          207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFP-DGNRFGTGSDDG--TCRLFDIRTG  282 (389)
Q Consensus       207 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~dg--~i~i~d~~~~  282 (389)
                      ..+..+++.+..++++++-+..+.|.+.++...  ....+ .........|++.| .|.++++-....  .|...++.. 
T Consensus       389 ~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~--~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG-  465 (628)
T 4a0p_A          389 IQPYDLSIDIYSRYIYWTCEATNVINVTRLDGR--SVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDG-  465 (628)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--EEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTS-
T ss_pred             CCcceEEeeccCCeEEEEcCCCCEEEEEECCCC--eEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCC-
Confidence            357889998856777778777889999998633  33333 23345689999999 555444433332  577777653 


Q ss_pred             ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec-CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  361 (389)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  361 (389)
                      .....+...    .....+.+++++++..|+.+.. .+.|..+++.... ...+.   ........+|++.. +.++++=
T Consensus       466 ~~~~~l~~~----~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~---~~~~~~P~glav~~-~~ly~tD  536 (628)
T 4a0p_A          466 TEREVLFFS----GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLE---DSNILQPVGLTVFE-NWLYWID  536 (628)
T ss_dssp             CSCEEEECS----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE---CSSCSCEEEEEEET-TEEEEEE
T ss_pred             CCcEEEEec----cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEE---cCCCCCcEEEEEEC-CEEEEEE
Confidence            333333221    1224789999998887777754 5789999985433 33332   22234467777764 4444444


Q ss_pred             eCCCeeEEeecceecccCc
Q 016458          362 SWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       362 ~~dg~i~i~~~~W~~~~~~  380 (389)
                      ...+.|..    -+..+|+
T Consensus       537 ~~~~~i~~----~~k~~G~  551 (628)
T 4a0p_A          537 KQQQMIEK----IDMTGRE  551 (628)
T ss_dssp             TTTTEEEE----EETTSSS
T ss_pred             CCCCeEEE----EECcCCC
Confidence            44556655    5555554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.09  E-value=0.0015  Score=53.99  Aligned_cols=188  Identities=12%  Similarity=0.091  Sum_probs=97.0

Q ss_pred             CcEEEEeeCC-----CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC-----ceEEEeCCCCC
Q 016458          171 DTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-----TARLWDTRVAS  240 (389)
Q Consensus       171 ~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  240 (389)
                      +.+++.|+.+     ..+.+||..+.+-...-..    .....-.+++..  ++.+++.|+.++     .+.+||+.+. 
T Consensus        62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~----p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~-  134 (302)
T 2xn4_A           62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM----RDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSN-  134 (302)
T ss_dssp             TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC----SSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTT-
T ss_pred             CEEEEEeCcCCCccccceEEECCCCCceeeCCCC----CccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCC-
Confidence            3677777754     3588999988765443311    111112233333  567777777654     4778887754 


Q ss_pred             cceeEEeeeccc--eEEEEEecCCCEEEEEecC-------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCE
Q 016458          241 RAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD-------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL  311 (389)
Q Consensus       241 ~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  311 (389)
                       ....+.....+  -.+++. -++++++.|+.+       ..+.+||+.+.+-...-.....   ......+.+  ++++
T Consensus       135 -~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~~~--~~~i  207 (302)
T 2xn4_A          135 -EWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR---RSGAGVGVL--NNLL  207 (302)
T ss_dssp             -EEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC---CBSCEEEEE--TTEE
T ss_pred             -eEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc---cccccEEEE--CCEE
Confidence             12222111111  112222 266777777643       3588999887653332111111   111222222  5677


Q ss_pred             EEEEecC-----CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCe-----eEEeecceecccCc
Q 016458          312 LFAGYSN-----GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN-----LKVNLGFWRVQEGA  380 (389)
Q Consensus       312 l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~i~~~~W~~~~~~  380 (389)
                      ++.|+.+     ..+.+||..+.+-...- ....... .-..+.+  ++++++.|+.++.     +.+    ||+.+.+
T Consensus       208 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~r~-~~~~~~~--~~~i~v~GG~~~~~~~~~v~~----yd~~~~~  278 (302)
T 2xn4_A          208 YAVGGHDGPLVRKSVEVYDPTTNAWRQVA-DMNMCRR-NAGVCAV--NGLLYVVGGDDGSCNLASVEY----YNPTTDK  278 (302)
T ss_dssp             EEECCBSSSSBCCCEEEEETTTTEEEEEC-CCSSCCB-SCEEEEE--TTEEEEECCBCSSSBCCCEEE----EETTTTE
T ss_pred             EEECCCCCCcccceEEEEeCCCCCEeeCC-CCCCccc-cCeEEEE--CCEEEEECCcCCCcccccEEE----EcCCCCe
Confidence            7777654     36899998876543321 1111111 1112222  6778888886643     566    7777654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.08  E-value=0.002  Score=53.33  Aligned_cols=226  Identities=11%  Similarity=0.036  Sum_probs=114.7

Q ss_pred             eEEEEec--CCcEEEEeCCCCCeeEEE--eeCCCcEEEEEECCCCcEEEEecCC----CcEEEEeCCCCCCCCCCCccee
Q 016458           81 RIVSASQ--DGRLIVWNALTSQKTHAI--KLPCAWVMTCAFSPTGQSVACGGLD----SVCSIFNLNSPTDKDGNLPVSR  152 (389)
Q Consensus        81 ~l~~~~~--dg~v~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~  152 (389)
                      +++.|+.  ...+.+||..+.+-...-  .........+.  .++..++.|+.+    ..+.+||..+..     +....
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~-----W~~~~   86 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDS-----WYSKL   86 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTE-----EEEEE
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCe-----EEECC
Confidence            4455553  357888998775533221  11111122222  266777777754    568888887643     11111


Q ss_pred             eecccccceEEEEEeeCCCcEEEEeeCC------CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee
Q 016458          153 MLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS  226 (389)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  226 (389)
                      .+.........+.+  + +.+++.|+.+      ..+.+||+.+..-...-..    .....-.+++..  ++.+++.|+
T Consensus        87 ~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~----p~~r~~~~~~~~--~~~iyv~GG  157 (306)
T 3ii7_A           87 GPPTPRDSLAACAA--E-GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM----LTQRCSHGMVEA--NGLIYVCGG  157 (306)
T ss_dssp             CCSSCCBSCEEEEE--T-TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC----SSCCBSCEEEEE--TTEEEEECC
T ss_pred             CCCccccceeEEEE--C-CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC----cCCcceeEEEEE--CCEEEEECC
Confidence            11111111122222  3 3677777765      4689999988765443211    111112223333  567777776


Q ss_pred             C---------CCceEEEeCCCCCcceeEEeeeccc--eEEEEEecCCCEEEEEecC-----CeEEEEECCCCceeeEeec
Q 016458          227 C---------DSTARLWDTRVASRAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQ  290 (389)
Q Consensus       227 ~---------dg~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~  290 (389)
                      .         -..+.+||+.+.  ....+.....+  -.+++.. ++++++.|+.+     ..+.+||+.+.+-...-..
T Consensus       158 ~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~  234 (306)
T 3ii7_A          158 SLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM  234 (306)
T ss_dssp             EESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCC
T ss_pred             CCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCC
Confidence            4         345788998754  22222211111  1122222 66777777754     4688999887643322111


Q ss_pred             cCCCCCCCCeeEEEeCCCCCEEEEEecC-----CcEEEEEcccce
Q 016458          291 QHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAK  330 (389)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  330 (389)
                         +........+.+  ++++++.|+.+     ..+.+||..+.+
T Consensus       235 ---p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          235 ---PWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             ---SCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             ---CCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence               111111233333  66777777754     468899987654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.05  E-value=0.0024  Score=53.96  Aligned_cols=238  Identities=8%  Similarity=0.104  Sum_probs=122.6

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEE---E----eeCCCcEEEEEECCC---CcEEEEec-C------
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA---I----KLPCAWVMTCAFSPT---GQSVACGG-L------  129 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~---~----~~~~~~v~~~~~~~~---~~~l~~~~-~------  129 (389)
                      -.....|+|.|+|+.|+++...|.|++++.. +.....   +    .........++++|+   +..|++.. .      
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            3457899999999834455567999999843 322111   1    112345789999995   44444432 2      


Q ss_pred             -CCcEEEEeCCCCCCCCCCCcc-eeeec---ccccceEEEEEeeCCCcEEEEeeC-------------CCeEEEEeCCCC
Q 016458          130 -DSVCSIFNLNSPTDKDGNLPV-SRMLS---GHKGYVSCCQYVPDEDTHLITSSG-------------DQTCVLWDITTG  191 (389)
Q Consensus       130 -dg~i~vw~~~~~~~~~~~~~~-~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~  191 (389)
                       ...|..|++............ ...+.   ........+.|.|++ .++++.+.             .|.|.-++....
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence             235666666542110000000 11111   011123568999998 55554433             246777776532


Q ss_pred             e------------eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC----ceEEEe--------CCC---------
Q 016458          192 L------------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS----TARLWD--------TRV---------  238 (389)
Q Consensus       192 ~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d--------~~~---------  238 (389)
                      .            ....+.    .++ .....++|+|..+.++++ ....    .|.+..        ...         
T Consensus       175 ~p~~npf~~~~~~~~~i~a----~G~-rnp~gl~~d~~~g~l~~~-d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~  248 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWS----YGI-RNPQGMAMNPWSNALWLN-EHGPRGGDEINIPQKGKNYGWPLATWGINYSGFK  248 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEE----ECC-SEEEEEEEETTTTEEEEE-EECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSC
T ss_pred             CCCCCCCcCCCCCCccEEE----EcC-cCccceEEECCCCCEEEE-ecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCc
Confidence            0            011110    122 346788999845555443 3221    222111        000         


Q ss_pred             -----------CCcceeEEeeeccceEEEEEec-------CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe
Q 016458          239 -----------ASRAVRTFHGHEGDVNTVKFFP-------DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV  300 (389)
Q Consensus       239 -----------~~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i  300 (389)
                                 ...++..+.. ...+..++|..       ++.++++....+.|...++..++........  ......+
T Consensus       249 ~~~~~~~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~rp  325 (353)
T 2g8s_A          249 IPEAKGEIVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRIL--TDRGQRI  325 (353)
T ss_dssp             CTTCCBSSCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEES--GGGCCCE
T ss_pred             cCcccCCCCCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcc--cCCCCce
Confidence                       0012223332 23567788864       4677777777888888888765433221110  0112258


Q ss_pred             eEEEeCCCCCEEEEE
Q 016458          301 TSIAFSISGRLLFAG  315 (389)
Q Consensus       301 ~~~~~~~~~~~l~~~  315 (389)
                      ..+++.|||.+.++.
T Consensus       326 ~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          326 RDVRTGPDGYLYVLT  340 (353)
T ss_dssp             EEEEECTTSCEEEEE
T ss_pred             eEEEECCCCcEEEEE
Confidence            999999999865544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.04  E-value=0.004  Score=52.04  Aligned_cols=236  Identities=10%  Similarity=0.041  Sum_probs=123.2

Q ss_pred             CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceee-ecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeC
Q 016458          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI  188 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  188 (389)
                      ..+.++.|.+.+..+++| ..|.| +...+.++    .+..... .......+..+.+.+ + ..+ .++..+.|.. ..
T Consensus        36 ~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~----tW~~~~~~~~~~~~~~~~i~~~~-~-~~~-~~g~~g~i~~-S~  105 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLVG-VNATL-METRDGGQ----TWEPRTLVLDHSDYRFNSVSFQG-N-EGW-IVGEPPIMLH-TT  105 (327)
T ss_dssp             SCEEEEEESSSSCEEEEE-TTTEE-EEESSTTS----SCEECCCCCSCCCCEEEEEEEET-T-EEE-EEEETTEEEE-ES
T ss_pred             CcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCC----CCeECCCCCCCCCccEEEEEecC-C-eEE-EEECCCeEEE-EC
Confidence            468899998777777755 46654 33333322    1111111 111244678888875 2 444 4456665544 23


Q ss_pred             CCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeE-EeeeccceEEEEEecCCCEEEE
Q 016458          189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVNTVKFFPDGNRFGT  267 (389)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~  267 (389)
                      ..++.-......  ......+..+.+.+ ++.+++++ .+|.|..  .......... ..+....+..+++.|++.++++
T Consensus       106 DgG~tW~~~~~~--~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~--S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~  179 (327)
T 2xbg_A          106 DGGQSWSQIPLD--PKLPGSPRLIKALG-NGSAEMIT-NVGAIYR--TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAV  179 (327)
T ss_dssp             STTSSCEECCCC--TTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE--ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEE
T ss_pred             CCCCCceECccc--cCCCCCeEEEEEEC-CCCEEEEe-CCccEEE--EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEE
Confidence            334333332110  12234567777765 55555554 4554422  2222222222 2334557889999998887776


Q ss_pred             EecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCee
Q 016458          268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT  347 (389)
Q Consensus       268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  347 (389)
                      +...+..+-.|- .+..-......    ....+..+.+.+++..+++ +.+|.+++.+...++....+......+...+.
T Consensus       180 g~~G~~~~S~d~-gG~tW~~~~~~----~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~  253 (327)
T 2xbg_A          180 SSRGSFYSTWEP-GQTAWEPHNRT----TSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFL  253 (327)
T ss_dssp             ETTSSEEEEECT-TCSSCEEEECC----SSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEE
T ss_pred             ECCCcEEEEeCC-CCCceeECCCC----CCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceE
Confidence            654433333442 12222222111    1224888999999876654 46787777643335444333210001234588


Q ss_pred             EEEECCCCCeEEeeeCCCeeE
Q 016458          348 CLGLSADGSALCTGSWDTNLK  368 (389)
Q Consensus       348 ~~~~~~~~~~l~~~~~dg~i~  368 (389)
                      ++++.+++..++++ .+|.+.
T Consensus       254 ~v~~~~~~~~~~~g-~~g~i~  273 (327)
T 2xbg_A          254 DLAYRTPNEVWLAG-GAGALL  273 (327)
T ss_dssp             EEEESSSSCEEEEE-STTCEE
T ss_pred             EEEecCCCEEEEEe-CCCeEE
Confidence            99999887766654 466663

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.03  E-value=0.0032  Score=52.03  Aligned_cols=230  Identities=13%  Similarity=0.171  Sum_probs=114.9

Q ss_pred             CcEEEEecC--CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC----CeEEEEeCCCCeeE
Q 016458          121 GQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----QTCVLWDITTGLRT  194 (389)
Q Consensus       121 ~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~  194 (389)
                      +.+++.|+.  ...+.+||..+..     +.....+.........+.  -+ +.+++.|+.+    ..+.+||+.+..-.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~-----W~~~~~~p~~r~~~~~~~--~~-~~lyv~GG~~~~~~~~~~~~d~~~~~W~   83 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYS-----WTDIRCPFEKRRDAACVF--WD-NVVYILGGSQLFPIKRMDCYNVVKDSWY   83 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTE-----EEECCCCSCCCBSCEEEE--ET-TEEEEECCBSSSBCCEEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCCceEEEecCCCCC-----EecCCCCCcccceeEEEE--EC-CEEEEEeCCCCCCcceEEEEeCCCCeEE
Confidence            345566654  3568888887643     111111111111112222  23 3677777754    67889999988654


Q ss_pred             EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC------CceEEEeCCCCCcceeEEeeeccc--eEEEEEecCCCEEE
Q 016458          195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGHEGD--VNTVKFFPDGNRFG  266 (389)
Q Consensus       195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~  266 (389)
                      ..-..   . ....-.+++..  ++.+++.|+.+      ..+.+||..+. . ...+.....+  -.+++. -++++++
T Consensus        84 ~~~~~---p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~-~-W~~~~~~p~~r~~~~~~~-~~~~iyv  154 (306)
T 3ii7_A           84 SKLGP---P-TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTE-S-WHTKPSMLTQRCSHGMVE-ANGLIYV  154 (306)
T ss_dssp             EEECC---S-SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTT-E-EEEECCCSSCCBSCEEEE-ETTEEEE
T ss_pred             ECCCC---C-ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCC-c-eEeCCCCcCCcceeEEEE-ECCEEEE
Confidence            44321   1 11111222222  66778887765      45888998764 1 2222111111  111222 2667777


Q ss_pred             EEec---------CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC-----CcEEEEEcccceEE
Q 016458          267 TGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAKVV  332 (389)
Q Consensus       267 ~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~  332 (389)
                      .|+.         -..+.+||+.+.+-...-.....   ...-..+.+  ++++++.|+.+     ..+.+||+.+.+-.
T Consensus       155 ~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  229 (306)
T 3ii7_A          155 CGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA---RKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWK  229 (306)
T ss_dssp             ECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSC---CBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEE
T ss_pred             ECCCCCCCCcccccceEEEeCCCCCeEEECCCccch---hhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEE
Confidence            7764         34588999887643322111111   111122222  66677776653     36899998876533


Q ss_pred             EeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC-----eeEEeecceecccCc
Q 016458          333 LNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-----NLKVNLGFWRVQEGA  380 (389)
Q Consensus       333 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~~~~W~~~~~~  380 (389)
                      .. ... ........++.+  ++++++.|+.++     .+.+    +|+.+.+
T Consensus       230 ~~-~~~-p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~----yd~~~~~  274 (306)
T 3ii7_A          230 MV-SPM-PWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILE----YNTETDK  274 (306)
T ss_dssp             EC-CCC-SCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEE----EETTTTE
T ss_pred             EC-CCC-CCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEE----EcCCCCe
Confidence            22 111 111112223333  677888888553     4555    7776654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.87  E-value=0.0094  Score=50.67  Aligned_cols=236  Identities=11%  Similarity=0.078  Sum_probs=143.9

Q ss_pred             EEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCccee
Q 016458           73 LDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR  152 (389)
Q Consensus        73 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~  152 (389)
                      .-.+|..+.+|.=. ..++.|||+++.+.+..+.... .|..-.|-.+..+-++ + +..|+-|++....      .+.+
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lV-T-~taVyHWsi~~~s------~P~k  140 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-T-DNAVYHWSMEGES------QPVK  140 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEE-C-SSEEEEEESSSSC------CCEE
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEE-c-CCeeEEecccCCC------Cchh
Confidence            44567777777655 5799999999999998888765 4666677544443333 2 4679999997622      1334


Q ss_pred             eeccc----ccceEEEEEeeCCCcEEEEee------CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC--CCCc
Q 016458          153 MLSGH----KGYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG--SNSR  220 (389)
Q Consensus       153 ~~~~~----~~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~  220 (389)
                      .+..|    ...|..-..+++..-++++|-      -.|.+.+|..+.+.... +     .+|......+....  ....
T Consensus       141 vFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~-i-----eGhaa~F~~~~~~g~~~~~~  214 (494)
T 1bpo_A          141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-I-----EGHAASFAQFKMEGNAEEST  214 (494)
T ss_dssp             EEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE-E-----CCSEEEEEEEECTTCSSEEE
T ss_pred             heecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch-h-----eeeeeeeEEEecCCCCCCce
Confidence            44433    345666666666644444442      24788899988764433 3     46655554444432  1122


Q ss_pred             EEEEeeC---CCceEEEeCCCC---Ccce--eEE---ee---eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceee
Q 016458          221 MFVSGSC---DSTARLWDTRVA---SRAV--RTF---HG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ  286 (389)
Q Consensus       221 ~l~~~~~---dg~i~i~d~~~~---~~~~--~~~---~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  286 (389)
                      +++.+..   .+.+++.++...   ..+.  +..   .+   ...-..++..++....++..+.-|.|.+||+.++.++.
T Consensus       215 lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~  294 (494)
T 1bpo_A          215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  294 (494)
T ss_dssp             EEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeee
Confidence            4444433   378999998643   1111  111   11   12345678889888899999999999999999999887


Q ss_pred             EeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458          287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (389)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (389)
                      .-......     |-..+......=++.....|.|.-..++..
T Consensus       295 ~nrIs~~~-----iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          295 MNRISGET-----IFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEECCSSC-----EEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             eecccCCc-----eEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            76554332     444444444444444456676665555443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.86  E-value=0.0019  Score=53.47  Aligned_cols=229  Identities=14%  Similarity=0.113  Sum_probs=114.0

Q ss_pred             CCCeEEEEecC----CcEEEEeCCCCCeeEEEeeCC--CcEEEEEECCCCcEEEEecC----C-----CcEEEEeCCCCC
Q 016458           78 ERNRIVSASQD----GRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSVACGGL----D-----SVCSIFNLNSPT  142 (389)
Q Consensus        78 ~~~~l~~~~~d----g~v~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~----d-----g~i~vw~~~~~~  142 (389)
                      ++.+++.|+.+    ..+.+||..+.+-...-..+.  .....+.+  ++.+++.|+.    +     ..+.+||..+..
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            45566666632    368888887654332211111  11122222  6677777775    2     457888887643


Q ss_pred             CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC-----CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC
Q 016458          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS  217 (389)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  217 (389)
                           +.....+.........+.+  ++ .+++.|+.+     ..+.+||+.+..-...-..    .....-.+++..  
T Consensus       102 -----W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~----p~~r~~~~~~~~--  167 (308)
T 1zgk_A          102 -----WSPCAPMSVPRNRIGVGVI--DG-HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM----LTRRIGVGVAVL--  167 (308)
T ss_dssp             -----EEECCCCSSCCBTCEEEEE--TT-EEEEECCEETTEECCCEEEEETTTTEEEECCCC----SSCCBSCEEEEE--
T ss_pred             -----EeECCCCCcCccccEEEEE--CC-EEEEEcCCCCCcccccEEEECCCCCeEeECCCC----CccccceEEEEE--
Confidence                 1111111111111122222  33 667776643     4688999988765443211    111112223333  


Q ss_pred             CCcEEEEeeCC-----CceEEEeCCCCCcceeEEee---eccceEEEEEecCCCEEEEEecC-----CeEEEEECCCCce
Q 016458          218 NSRMFVSGSCD-----STARLWDTRVASRAVRTFHG---HEGDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQ  284 (389)
Q Consensus       218 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~  284 (389)
                      ++.+++.|+.+     ..+.+||+.+..  ...+..   .......+.+  ++++++.|+.+     ..+.+||+.+.+-
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  243 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW  243 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence            56777877764     458888887541  111111   1111122222  67777777764     4699999887643


Q ss_pred             eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC-----CcEEEEEcccceE
Q 016458          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAKV  331 (389)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~  331 (389)
                      ...-....   .......+.+  ++++++.|+.+     ..+.+||+.+.+-
T Consensus       244 ~~~~~~p~---~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          244 TFVAPMKH---RRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             EECCCCSS---CCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             EECCCCCC---CccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence            32211111   1111122222  56777777654     3578888876543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.82  E-value=0.0099  Score=49.31  Aligned_cols=227  Identities=9%  Similarity=0.052  Sum_probs=112.9

Q ss_pred             eEEEEecCCcEEEEeCCCCCeeEEEee--CCCcEEEEEECCCCcEEEEecC-----C------CcEEEEeCCCCCCCCCC
Q 016458           81 RIVSASQDGRLIVWNALTSQKTHAIKL--PCAWVMTCAFSPTGQSVACGGL-----D------SVCSIFNLNSPTDKDGN  147 (389)
Q Consensus        81 ~l~~~~~dg~v~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-----d------g~i~vw~~~~~~~~~~~  147 (389)
                      +++.|+  ..+.+||..+.+-.. ...  +.......+...++..++.|+.     .      ..+.+||..+..     
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~-----   78 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE-----   78 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE-----
T ss_pred             EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe-----
Confidence            344555  468999988776432 222  2122333344457788888873     1      126677876633     


Q ss_pred             CcceeeecccccceEEEEEeeCCCcEEEEeeCC--------CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (389)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (389)
                      +.....+........ ++.. + +.+++.|+.+        ..+.+||+.+.+-...-.  .  .....-.+++..  ++
T Consensus        79 W~~~~~~p~~r~~~~-~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~--p~~r~~~~~~~~--~~  149 (315)
T 4asc_A           79 WLGMPPLPSPRCLFG-LGEA-L-NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP--L--PYVVYGHTVLSH--MD  149 (315)
T ss_dssp             EEECCCBSSCEESCE-EEEE-T-TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC--C--SSCCBSCEEEEE--TT
T ss_pred             EEECCCCCcchhcee-EEEE-C-CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC--C--CCcccceeEEEE--CC
Confidence            111111111111111 1222 3 3677777632        458999998876443221  1  111112223333  56


Q ss_pred             cEEEEeeC-C-----CceEEEeCCCCCcceeEEeeeccc--eEEEEEecCCCEEEEEecCC-----eEEEEECCCCceee
Q 016458          220 RMFVSGSC-D-----STARLWDTRVASRAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGHQLQ  286 (389)
Q Consensus       220 ~~l~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~  286 (389)
                      .+++.|+. +     ..+.+||+.+..  ...+.....+  -.+++. -++++++.|+.++     .+.+||+.+.+-..
T Consensus       150 ~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          150 LVYVIGGKGSDRKCLNKMCVYDPKKFE--WKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             EEEEECCBCTTSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred             EEEEEeCCCCCCcccceEEEEeCCCCe--EEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence            78888876 2     468889987541  1111111111  112222 2677778887654     58899988764333


Q ss_pred             EeeccCCCCCCCCeeEEEeCCCCCEEEEEecC--------------CcEEEEEcccceEE
Q 016458          287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSN--------------GDCYVWDTLLAKVV  332 (389)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~~  332 (389)
                      .-.....   ......+.+  ++++++.|+.+              ..+.+||+.+.+-.
T Consensus       227 ~~~~p~~---r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  281 (315)
T 4asc_A          227 FEAFPQE---RSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE  281 (315)
T ss_dssp             ECCCSSC---CBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred             CCCCCCc---ccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence            2211111   111122222  56777777653              24678888766543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.79  E-value=0.0035  Score=61.34  Aligned_cols=268  Identities=10%  Similarity=0.179  Sum_probs=153.0

Q ss_pred             CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEe
Q 016458           88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV  167 (389)
Q Consensus        88 dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (389)
                      ..+|.|.|+.++..+...+..   .-+.-.+|..+.+|.-. ...+.|+|+++..       ......- ..+|.--.|.
T Consensus        47 ~~~vvIidl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnl~~k~-------klks~~~-~e~VvfWkWi  114 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKS-------KMKAHTM-TDDVTFWKWI  114 (1630)
T ss_pred             CceEEEEECCCCCCccccccc---chhhccCCCcceEEEec-CCeEEEeehHHhh-------hhccccc-CCCceEEEec
Confidence            347889998887655332221   22344678888777664 6789999998743       1122111 3456666776


Q ss_pred             eCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEEeeCCCCcEEE-Eee------CCCceEEEeCCCC
Q 016458          168 PDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGS------CDSTARLWDTRVA  239 (389)
Q Consensus       168 ~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~------~dg~i~i~d~~~~  239 (389)
                      ...  .|+..+ +..|..|++... .+...+... ..-....|..-..++ +.++++ +|-      -.|.+.+|.... 
T Consensus       115 s~~--~l~lVT-~~aVyHW~~~~~s~P~k~fdR~-~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er-  188 (1630)
T 1xi4_A          115 SLN--TVALVT-DNAVYHWSMEGESQPVKMFDRH-SSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDR-  188 (1630)
T ss_pred             CCC--eeEEEc-CCeEEEeccCCCCccHHHHhcc-hhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeeccc-
Confidence            643  344333 357999999753 232333111 011245577777777 444444 332      358899998874 


Q ss_pred             CcceeEEeeeccceEEEEEec---CCCEEEEEec---CCeEEEEECCCC---ceee------EeeccCCCCCCCCeeEEE
Q 016458          240 SRAVRTFHGHEGDVNTVKFFP---DGNRFGTGSD---DGTCRLFDIRTG---HQLQ------VYYQQHGENEIPHVTSIA  304 (389)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~---dg~i~i~d~~~~---~~~~------~~~~~~~~~~~~~i~~~~  304 (389)
                       ...+.+.+|-+....+....   ....++.+..   .+.++|.++...   ....      .+..+.  ....-..++.
T Consensus       189 -~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~--~~~Dfpv~~~  265 (1630)
T 1xi4_A          189 -KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE--AQNDFPVAMQ  265 (1630)
T ss_pred             -ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcc--cccCcceEEE
Confidence             34445566655544433321   1223333322   368999888543   1111      111111  1111245677


Q ss_pred             eCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccCc
Q 016458          305 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPW  384 (389)
Q Consensus       305 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~~  384 (389)
                      .++....++.-+.-|.+++||+.++..+..-    +-...+|...+-+....-++.....|.|.-    -.+.+..++|+
T Consensus       266 vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~----ris~~~iF~~~~~~~~~g~~~vnr~G~vl~----v~v~~~~iv~y  337 (1630)
T 1xi4_A          266 ISEKHDVVFLITKYGYIHLYDLETGTCIYMN----RISGETIFVTAPHEATAGIIGVNRKGQVLS----VCVEEENIIPY  337 (1630)
T ss_pred             eccccCEEEEEecCceEEEEecccchhhhhc----cccCCceEEeccCCCCCceEEEcCCceEEE----EEEccchhhhh
Confidence            8888888889999999999999999888765    334445554444443333444556777665    66666666665

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.78  E-value=0.013  Score=49.50  Aligned_cols=253  Identities=11%  Similarity=0.052  Sum_probs=124.9

Q ss_pred             CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC---CCcEEEEeeC-------
Q 016458          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD---EDTHLITSSG-------  179 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~-------  179 (389)
                      .....|+|.|+|+.|+++...|.|++++....... ..................++++|+   +..++++-..       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSA-PLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECC-CCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceee-EecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            45789999999983444556799999885431100 000000111122345688999985   4344444332       


Q ss_pred             CCeEEEEeCCCC----eeEEEecCcccC--CCCCCeeEEEeeCCCCcEEEEeeC-------------CCceEEEeCCCCC
Q 016458          180 DQTCVLWDITTG----LRTSVFGGEFQS--GHTADVLSVSISGSNSRMFVSGSC-------------DSTARLWDTRVAS  240 (389)
Q Consensus       180 dg~i~iwd~~~~----~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~  240 (389)
                      ...|..|++...    .....+......  ........+.|.| ++.++++.+.             .|.|.-++....-
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence            235767776543    111111101100  1112245799999 6666665433             2456666654320


Q ss_pred             -----------cceeEE-eeeccceEEEEEec-CCCEEEEEec-CCeEEEEECCCCcee----eE---------ee----
Q 016458          241 -----------RAVRTF-HGHEGDVNTVKFFP-DGNRFGTGSD-DGTCRLFDIRTGHQL----QV---------YY----  289 (389)
Q Consensus       241 -----------~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~----~~---------~~----  289 (389)
                                 .....+ .++. ....++|+| ++.++++-.. ++.=.|.-+..+...    ..         +.    
T Consensus       176 p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~  254 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG  254 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred             CCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence                       011122 2333 367899999 5554443221 211122222221110    00         00    


Q ss_pred             ---cc-CCC----CCCCCeeEEEeCC-------CCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458          290 ---QQ-HGE----NEIPHVTSIAFSI-------SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (389)
Q Consensus       290 ---~~-~~~----~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (389)
                         .. ..+    .+......++|..       +|.++++....+.|...++..++.......+ ......+..+++.||
T Consensus       255 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~rp~~v~~~pd  333 (353)
T 2g8s_A          255 EIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRIL-TDRGQRIRDVRTGPD  333 (353)
T ss_dssp             SSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEES-GGGCCCEEEEEECTT
T ss_pred             CCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcc-cCCCCceeEEEECCC
Confidence               00 000    0011356677753       4667777667788888888765543332111 223457999999999


Q ss_pred             CCeEEeee-CCCe
Q 016458          355 GSALCTGS-WDTN  366 (389)
Q Consensus       355 ~~~l~~~~-~dg~  366 (389)
                      |.++++.. .+|.
T Consensus       334 G~lyv~td~~~g~  346 (353)
T 2g8s_A          334 GYLYVLTDESSGE  346 (353)
T ss_dssp             SCEEEEECSTTEE
T ss_pred             CcEEEEEeCCCCE
Confidence            98666433 3443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.76  E-value=0.0065  Score=50.24  Aligned_cols=187  Identities=7%  Similarity=0.072  Sum_probs=95.4

Q ss_pred             CcEEEEeeC----C-----CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC-----CceEEEeC
Q 016458          171 DTHLITSSG----D-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDT  236 (389)
Q Consensus       171 ~~~l~~~~~----d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~  236 (389)
                      +.+++.|+.    +     ..+.+||+.+..-...-..   ..... -.+++..  ++.+++.|+.+     ..+.+||+
T Consensus        71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~  144 (308)
T 1zgk_A           71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM---SVPRN-RIGVGVI--DGHIYAVGGSHGCIHHNSVERYEP  144 (308)
T ss_dssp             TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC---SSCCB-TCEEEEE--TTEEEEECCEETTEECCCEEEEET
T ss_pred             CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCC---CcCcc-ccEEEEE--CCEEEEEcCCCCCcccccEEEECC
Confidence            367777765    2     4688999988764433211   11111 1223333  56777777644     35788888


Q ss_pred             CCCCcceeEEee---eccceEEEEEecCCCEEEEEecC-----CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC
Q 016458          237 RVASRAVRTFHG---HEGDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS  308 (389)
Q Consensus       237 ~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  308 (389)
                      .+..  ...+..   ....-..+.+  ++++++.|+.+     ..+.+||+.+.+-...-....   .......+.+  +
T Consensus       145 ~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~---~r~~~~~~~~--~  215 (308)
T 1zgk_A          145 ERDE--WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT---IRSGAGVCVL--H  215 (308)
T ss_dssp             TTTE--EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS---CCBSCEEEEE--T
T ss_pred             CCCe--EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC---ccccceEEEE--C
Confidence            7541  111111   1111122222  66777777754     458899987764332211111   1111222333  6


Q ss_pred             CCEEEEEecC-----CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC-----eeEEeecceeccc
Q 016458          309 GRLLFAGYSN-----GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-----NLKVNLGFWRVQE  378 (389)
Q Consensus       309 ~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~~~~W~~~~  378 (389)
                      +++++.|+.+     ..+.+||+.+.+-...- ....... ....+.+  ++++++.|+.++     .+.+    +|+.+
T Consensus       216 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~-~~~~~~~--~~~i~v~GG~~~~~~~~~v~~----yd~~~  287 (308)
T 1zgk_A          216 NCIYAAGGYDGQDQLNSVERYDVETETWTFVA-PMKHRRS-ALGITVH--QGRIYVLGGYDGHTFLDSVEC----YDPDT  287 (308)
T ss_dssp             TEEEEECCBCSSSBCCCEEEEETTTTEEEECC-CCSSCCB-SCEEEEE--TTEEEEECCBCSSCBCCEEEE----EETTT
T ss_pred             CEEEEEeCCCCCCccceEEEEeCCCCcEEECC-CCCCCcc-ceEEEEE--CCEEEEEcCcCCCcccceEEE----EcCCC
Confidence            6777777654     46999998876543321 1111111 1122222  577888887654     3445    77766


Q ss_pred             Cc
Q 016458          379 GA  380 (389)
Q Consensus       379 ~~  380 (389)
                      .+
T Consensus       288 ~~  289 (308)
T 1zgk_A          288 DT  289 (308)
T ss_dssp             TE
T ss_pred             CE
Confidence            53

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.74  E-value=0.031  Score=52.71  Aligned_cols=276  Identities=11%  Similarity=0.043  Sum_probs=146.8

Q ss_pred             CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (389)
                      ..|.++....++ .|..|+.+| +..||..+.+...........|.++.. .++ .|..++.+ -+..|+..+..     
T Consensus        63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~-----  132 (758)
T 3ott_A           63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRK-----  132 (758)
T ss_dssp             SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCC-----
T ss_pred             ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCe-----
Confidence            468998877776 566666665 788998765433211111234776654 344 45556555 57788876532     


Q ss_pred             Ccceeeec-----ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458          148 LPVSRMLS-----GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (389)
Q Consensus       148 ~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  222 (389)
                        . ..+.     .....|.++....++ . +..|+.+ -|..++..++.................|.++...+ ++..|
T Consensus       133 --~-~~~~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~~~~l  205 (758)
T 3ott_A          133 --L-TSFDTRRNGLPNNTIYSIIRTKDN-Q-IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT-TRQCV  205 (758)
T ss_dssp             --E-EEECHHHHCCSCSCEEEEEECTTC-C-EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET-TTTEE
T ss_pred             --E-EEeccCCCCcCCCeEEEEEEcCCC-C-EEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEEC-CCCEE
Confidence              1 1110     112457777766655 3 5555554 47788887765433211100001123478887776 44544


Q ss_pred             EEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC---CCCCCCC
Q 016458          223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH---GENEIPH  299 (389)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~~~  299 (389)
                      ..|+. +-+..+|..+. ............|.++...++|.+.+ |+. +-+.+++..+.... .+....   .......
T Consensus       206 Wigt~-~Gl~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~  280 (758)
T 3ott_A          206 WIGTE-GYLFQYFPSTG-QIKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNI  280 (758)
T ss_dssp             EEEEE-EEEEEEETTTT-EEEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCE-EECCCTTCTTSCSCSC
T ss_pred             EEEEC-CCCeEEcCCCC-eEEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEE-EEEcCCCCcCcCCcCe
Confidence            44554 45888887654 22111111234588888877776554 444 45788887665432 222111   0112234


Q ss_pred             eeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC-cCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458          300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS-LQNSHEGRITCLGLSADGSALCTGSWDTNLK  368 (389)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  368 (389)
                      |.++....+|.+-+ |+..| +.++.....-....... ........|.++.-..+|.+.+ |+.+|..+
T Consensus       281 i~~i~~D~~g~lWi-GT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~Gl~~  347 (758)
T 3ott_A          281 IWNIFADQEHNIWL-GTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANGLIR  347 (758)
T ss_dssp             EEEEEECTTCCEEE-EESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTEEEE
T ss_pred             EEEEEEcCCCCEEE-EeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCccee
Confidence            88888888776444 54556 55543322111111100 0012234688998888887554 44555443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.72  E-value=0.0089  Score=49.59  Aligned_cols=215  Identities=9%  Similarity=0.032  Sum_probs=103.2

Q ss_pred             EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC-----C------CeEEEEeCCCC
Q 016458          123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----D------QTCVLWDITTG  191 (389)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d------g~i~iwd~~~~  191 (389)
                      +++.|+  ..+..||..+..     +.. ..+..............+ +.+++.|+.     .      ..+..||..+.
T Consensus         7 l~~~GG--~~~~~yd~~~~~-----W~~-~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~   77 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANE-----CYC-ASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS   77 (315)
T ss_dssp             EEEEET--TEEEEEETTTTE-----EEE-EECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTT
T ss_pred             EEEEcC--CceEEECCCCCe-----Eec-CCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCC
Confidence            345555  568899987743     111 111111111122222233 367777773     1      23788999887


Q ss_pred             eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC--------CceEEEeCCCCCcceeEEeeeccc--eEEEEEecC
Q 016458          192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRVASRAVRTFHGHEGD--VNTVKFFPD  261 (389)
Q Consensus       192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~~  261 (389)
                      +-...-.  .  .....-.+++..  ++.+++.|+.+        ..+.+||..+..  ...+.....+  -.+++. .+
T Consensus        78 ~W~~~~~--~--p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~-~~  148 (315)
T 4asc_A           78 EWLGMPP--L--PSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDPLPYVVYGHTVLS-HM  148 (315)
T ss_dssp             EEEECCC--B--SSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEE-ET
T ss_pred             eEEECCC--C--CcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeECCCCCCcccceeEEE-EC
Confidence            6533211  1  111111223333  56777777742        458888887541  1111111110  111222 36


Q ss_pred             CCEEEEEec-C-----CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC-----cEEEEEcccce
Q 016458          262 GNRFGTGSD-D-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-----DCYVWDTLLAK  330 (389)
Q Consensus       262 ~~~l~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  330 (389)
                      +++++.|+. +     ..+.+||..+.+-...-....   ....-..+.+  ++++++.|+.++     .+.+||+.+.+
T Consensus       149 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~---~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          149 DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQT---ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSS---CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCC---chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            677777776 2     468999988764332211111   1111122222  667777777654     58889987764


Q ss_pred             EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC
Q 016458          331 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  364 (389)
Q Consensus       331 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  364 (389)
                      -...- ....... .-..+.+  ++++++.|+.+
T Consensus       224 W~~~~-~~p~~r~-~~~~~~~--~~~l~v~GG~~  253 (315)
T 4asc_A          224 WAPFE-AFPQERS-SLSLVSL--VGTLYAIGGFA  253 (315)
T ss_dssp             EEEEC-CCSSCCB-SCEEEEE--TTEEEEEEEEE
T ss_pred             EEECC-CCCCccc-ceeEEEE--CCEEEEECCcc
Confidence            33322 1111111 1122222  56777888764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.64  E-value=0.013  Score=49.81  Aligned_cols=148  Identities=15%  Similarity=0.120  Sum_probs=95.5

Q ss_pred             CCcEEEEeeCCCceEEEeCCCCCcceeEEeee----ccceEEEEEecCCCEEEEEecCCeEEEEECCCCce---------
Q 016458          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ---------  284 (389)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------  284 (389)
                      ++.-++.+- ++.||.-++... ...+.+...    -..|..+..+|+|.+|+..+. ..|.|..+..+..         
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~-~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTD-SLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTC-SSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred             CCCEEEEEE-CCEEEEEECCCC-CcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence            444444433 477888787754 345555543    225788999999999998865 5899998874321         


Q ss_pred             ---eeEeeccCC-CCCCCCeeEEEeCCC---CCEEEEEecCCcEEEEEcccc--eEEEeecCcC-----CCCCCCeeEEE
Q 016458          285 ---LQVYYQQHG-ENEIPHVTSIAFSIS---GRLLFAGYSNGDCYVWDTLLA--KVVLNLGSLQ-----NSHEGRITCLG  350 (389)
Q Consensus       285 ---~~~~~~~~~-~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~-----~~~~~~v~~~~  350 (389)
                         ...+..... .....+|..+.|+|-   +..|++-..|+.|++||+...  ++. .+....     ......|.+++
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence               112222111 112456999999995   458999999999999999752  122 232110     22336789999


Q ss_pred             ECCCCCeEEeee--CCCeeEE
Q 016458          351 LSADGSALCTGS--WDTNLKV  369 (389)
Q Consensus       351 ~~~~~~~l~~~~--~dg~i~i  369 (389)
                      |.+++-.|...+  ..|.|+-
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEE
Confidence            999888777755  7788764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.61  E-value=0.065  Score=52.73  Aligned_cols=177  Identities=12%  Similarity=0.114  Sum_probs=105.2

Q ss_pred             eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee---CCCCcEEEEee----------CCCceEEEeCCCCCcceeEEee
Q 016458          182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS---GSNSRMFVSGS----------CDSTARLWDTRVASRAVRTFHG  248 (389)
Q Consensus       182 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~  248 (389)
                      .|++.|..+.+.+..+.    ......+.+++..   .....++++|+          ..|.|.+|++...+-.+..-..
T Consensus       808 ~i~lidp~t~~~i~~~~----l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~  883 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQ----FLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE  883 (1158)
T ss_dssp             EEEEEETTTCCEEEEEE----CCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEeCCCCeEEEEEe----CCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE
Confidence            46777777666655553    2333445555543   22346888876          3578999998733111112223


Q ss_pred             eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc-
Q 016458          249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-  327 (389)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-  327 (389)
                      .++++++++-- +| +|++|- ...|++|++...+.+..-.....     .+..+.....++++++|+.-..|.++..+ 
T Consensus       884 v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~-----~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~  955 (1158)
T 3ei3_A          884 VKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYN-----NIMALYLKTKGDFILVGDLMRSVLLLAYKP  955 (1158)
T ss_dssp             ESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECC-----CSCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred             cCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccc-----cEEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence            46778887754 45 444443 46899999987654441111111     13333333457899999888778776543 


Q ss_pred             -cceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          328 -LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       328 -~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                       ..+....-.   ..+...++++.+-.++ .++.+..+|.+.+    .+...
T Consensus       956 ~~~~L~~~a~---D~~~~~vta~~~ld~~-t~l~aD~~gNl~v----l~~~~  999 (1158)
T 3ei3_A          956 MEGNFEEIAR---DFNPNWMSAVEILDDD-NFLGAENAFNLFV----CQKDS  999 (1158)
T ss_dssp             TTTEEEEEEE---CCSCBCEEEEEEEETT-EEEEEETTSEEEE----EEECT
T ss_pred             CCCeEEEEEe---ecccccEEEEEEEccC-cEEEEcCCCcEEE----EecCC
Confidence             343333322   4455678888887554 6777899999998    66554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.59  E-value=0.017  Score=49.11  Aligned_cols=142  Identities=15%  Similarity=0.197  Sum_probs=89.8

Q ss_pred             CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC---c--------ceeEEee
Q 016458          180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---R--------AVRTFHG  248 (389)
Q Consensus       180 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~--------~~~~~~~  248 (389)
                      ++.||.-++......+.+.... ...-..+..+..+| ++.+|+..+ +..|.|..+..+.   .        ..+.+.-
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~-~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l  116 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSR-HLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSI  116 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTT-TCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred             CCEEEEEECCCCCcceEEecCc-ccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEc
Confidence            3778888877544343432110 01223678899999 888888776 4578888876321   0        1112222


Q ss_pred             ------eccceEEEEEec---CCCEEEEEecCCeEEEEECCCCce-eeEeeccC----CCCCCCCeeEEEeCCCCCEEEE
Q 016458          249 ------HEGDVNTVKFFP---DGNRFGTGSDDGTCRLFDIRTGHQ-LQVYYQQH----GENEIPHVTSIAFSISGRLLFA  314 (389)
Q Consensus       249 ------~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~  314 (389)
                            ...+|..+.|+|   .+..|++-..|+.|++||+..... ...+....    .......+.+++|.+++-.|++
T Consensus       117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv  196 (452)
T 3pbp_A          117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYC  196 (452)
T ss_dssp             GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred             CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence                  246799999999   567899999999999999986321 11221110    0111245899999998877777


Q ss_pred             Ee--cCCcEEEE
Q 016458          315 GY--SNGDCYVW  324 (389)
Q Consensus       315 ~~--~dg~i~i~  324 (389)
                      .+  .+|.|+-.
T Consensus       197 l~~t~~GDIYAl  208 (452)
T 3pbp_A          197 LNTTEGGDIFAF  208 (452)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EecCCCCCEEEE
Confidence            55  78888754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.50  E-value=0.025  Score=47.82  Aligned_cols=145  Identities=10%  Similarity=-0.021  Sum_probs=68.7

Q ss_pred             CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC------CCceEEEeCCCCCcceeEEeeec---c
Q 016458          181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC------DSTARLWDTRVASRAVRTFHGHE---G  251 (389)
Q Consensus       181 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~---~  251 (389)
                      ..+.+||+.+..-...-...  ... ..-.+++..  ++.+++.|+.      ...+..||+.........+....   .
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p--~~~-~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~  242 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESP--WYG-TAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG  242 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECS--SCC-CBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC
T ss_pred             ccEEEEeCCCCcEEECCCCC--CCC-cccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc
Confidence            57999999887655442111  111 111333333  5677777764      34577787622212222221111   1


Q ss_pred             ceEEEEEecCCCEEEEEecC----------------------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC
Q 016458          252 DVNTVKFFPDGNRFGTGSDD----------------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  309 (389)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  309 (389)
                      .....+...++++++.|+.+                      ..+.+||+.+.+-...-......   ..-.++  ..++
T Consensus       243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r---~~~~~~--~~~~  317 (357)
T 2uvk_A          243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGR---AYGVSL--PWNN  317 (357)
T ss_dssp             CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCC---BSSEEE--EETT
T ss_pred             cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCc---ccceeE--EeCC
Confidence            11111223366777777742                      25788998875533322111111   111222  2467


Q ss_pred             CEEEEEecCC------cEEEEEcccceEEEee
Q 016458          310 RLLFAGYSNG------DCYVWDTLLAKVVLNL  335 (389)
Q Consensus       310 ~~l~~~~~dg------~i~i~d~~~~~~~~~~  335 (389)
                      ++++.|+.++      .|.++++++++.....
T Consensus       318 ~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          318 SLLIIGGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            7778887543      3566688777665544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.49  E-value=0.03  Score=46.43  Aligned_cols=177  Identities=11%  Similarity=0.132  Sum_probs=85.4

Q ss_pred             CcEEEEeeC----CC-------eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC-------CceE
Q 016458          171 DTHLITSSG----DQ-------TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-------STAR  232 (389)
Q Consensus       171 ~~~l~~~~~----dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~  232 (389)
                      +.+++.|+.    ++       .+..||..+.+-...-..    .....-.+++..  ++.+++.|+.+       ..+.
T Consensus        57 ~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~----p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~  130 (318)
T 2woz_A           57 NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL----PSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL  130 (318)
T ss_dssp             SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCB----SSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred             CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC----CccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence            367777773    12       277889887765433211    111112233333  56777777754       2477


Q ss_pred             EEeCCCCCcceeEEeeeccce--EEEEEecCCCEEEEEecC------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEE
Q 016458          233 LWDTRVASRAVRTFHGHEGDV--NTVKFFPDGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA  304 (389)
Q Consensus       233 i~d~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~  304 (389)
                      +||..+.  ....+.....+.  .+++. .++++++.|+.+      ..+.+||+.+.+-...-.....   ......+.
T Consensus       131 ~yd~~~~--~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~~  204 (318)
T 2woz_A          131 CYDPVAA--KWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTP---RSMFGVAI  204 (318)
T ss_dssp             EEETTTT--EEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSC---CBSCEEEE
T ss_pred             EEeCCCC--CEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCC---cccceEEE
Confidence            8888754  112221111110  11222 367777777642      3589999887653332111111   11112222


Q ss_pred             eCCCCCEEEEEecC-----CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458          305 FSISGRLLFAGYSN-----GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (389)
Q Consensus       305 ~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  365 (389)
                      +  ++++++.|+.+     ..+.+||+.+.+-... ....... ..-..+.+  ++++++.||.++
T Consensus       205 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r-~~~~~~~~--~~~i~v~GG~~~  264 (318)
T 2woz_A          205 H--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-TEFPQER-SSISLVSL--AGSLYAIGGFAM  264 (318)
T ss_dssp             E--TTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-CCCSSCC-BSCEEEEE--TTEEEEECCBCC
T ss_pred             E--CCEEEEEcCcCCCCccceEEEEECCCCeEEEC-CCCCCcc-cceEEEEE--CCEEEEECCeec
Confidence            2  56777777643     2577899876543322 1111111 11122222  567778877653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.49  E-value=0.034  Score=46.47  Aligned_cols=245  Identities=15%  Similarity=0.145  Sum_probs=128.5

Q ss_pred             eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe------eCCCcEEEEEECCC---CcEEEEe--
Q 016458           59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK------LPCAWVMTCAFSPT---GQSVACG--  127 (389)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~l~~~--  127 (389)
                      ....+...-.....|+|.|+|.++++--..|.|++++..++.......      ........|+++|+   +..|++.  
T Consensus        23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            444444455568899999999877776558999999866555432211      22456899999995   3444432  


Q ss_pred             -cCCCcEEEEeCCCCCC---C-CCCCcceeeec-ccccceEEEEEeeCCCcEEEEeeC-------------CCeEEEEeC
Q 016458          128 -GLDSVCSIFNLNSPTD---K-DGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSG-------------DQTCVLWDI  188 (389)
Q Consensus       128 -~~dg~i~vw~~~~~~~---~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~  188 (389)
                       ..++.|.-|.+.....   . .....+...+. ........|.|.|++ .++++.+.             .|.|.-.+.
T Consensus       103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~  181 (347)
T 3das_A          103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTP  181 (347)
T ss_dssp             CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred             cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence             2345566666654211   0 01111111121 111234568999998 55555432             355555565


Q ss_pred             CCCe-------eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCCceEEEeCCCC-----------------Ccce
Q 016458          189 TTGL-------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVA-----------------SRAV  243 (389)
Q Consensus       189 ~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-----------------~~~~  243 (389)
                      ...-       ....+    ..++. ....++|+| ++.++++-. .++.=.|.-+..+                 ..++
T Consensus       182 dG~ip~~nPf~~~~i~----a~G~R-Np~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~  255 (347)
T 3das_A          182 DGEPAPGNPFPGSPVY----SYGHR-NVQGLAWDD-KQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPV  255 (347)
T ss_dssp             TSSBCTTCSSTTCCEE----EBCCS-BCCEEEECT-TCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCS
T ss_pred             CCCccCCCCCCCCeEE----eeCCC-CcceEEECC-CCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCc
Confidence            4320       00011    02332 456789998 666655422 2221122111111                 1223


Q ss_pred             eEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCcee---eEeeccCCCCCCCCeeEEEeCCCCCEEEEE
Q 016458          244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL---QVYYQQHGENEIPHVTSIAFSISGRLLFAG  315 (389)
Q Consensus       244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  315 (389)
                      ..+..+......++|. ++..++..-..+.|....+......   ..+..    .....+..++..|||.++++.
T Consensus       256 ~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~----~~~gR~~dv~~~pDG~lyv~t  325 (347)
T 3das_A          256 AQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLE----GEYGRLRTVAPAGGDKLWLVT  325 (347)
T ss_dssp             EEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEEST----TTSSCEEEEEEEETTEEEEEE
T ss_pred             EecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeec----CCCCCccEEEECCCCcEEEEE
Confidence            3333332356777876 4566666556667777776554321   11111    112358899999998765554

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.37  E-value=0.045  Score=45.34  Aligned_cols=229  Identities=11%  Similarity=0.108  Sum_probs=111.7

Q ss_pred             eEEEEecCCcEEEEeCCCCCeeEEEeeC--CCcEEEEEECCCCcEEEEecC----CC-------cEEEEeCCCCCCCCCC
Q 016458           81 RIVSASQDGRLIVWNALTSQKTHAIKLP--CAWVMTCAFSPTGQSVACGGL----DS-------VCSIFNLNSPTDKDGN  147 (389)
Q Consensus        81 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~----dg-------~i~vw~~~~~~~~~~~  147 (389)
                      .++.|+.  .+..||..+.+-.. ....  ...........++..++.|+.    ++       .+.+||..+..     
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~-----   89 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE-----   89 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE-----
T ss_pred             hhhcccc--ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc-----
Confidence            3444443  37889988776443 2221  122233334457788888873    12       16677776533     


Q ss_pred             CcceeeecccccceEEEEEeeCCCcEEEEeeCC-------CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (389)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (389)
                      +.....+........ ++.. + +.+++.|+.+       ..+.+||+.+.+-...-..    .....-.+++..  ++.
T Consensus        90 W~~~~~~p~~r~~~~-~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~----p~~r~~~~~~~~--~~~  160 (318)
T 2woz_A           90 WVGLPPLPSARCLFG-LGEV-D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL----PIKVYGHNVISH--NGM  160 (318)
T ss_dssp             EEECSCBSSCBCSCE-EEEE-T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC----SSCEESCEEEEE--TTE
T ss_pred             EEECCCCCccccccc-eEEE-C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC----CCcccccEEEEE--CCE
Confidence            111111111111111 2222 3 3677777754       3588899988765543211    111111222232  667


Q ss_pred             EEEEeeC------CCceEEEeCCCCCcceeEEeeeccc--eEEEEEecCCCEEEEEecC-----CeEEEEECCCCceeeE
Q 016458          221 MFVSGSC------DSTARLWDTRVASRAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQV  287 (389)
Q Consensus       221 ~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~  287 (389)
                      +++.|+.      -..+.+||+.+.  ....+.....+  -.+++. -++++++.|+.+     ..+.+||+.+.+-...
T Consensus       161 iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~  237 (318)
T 2woz_A          161 IYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM  237 (318)
T ss_dssp             EEEECCEESSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC
T ss_pred             EEEEcCCCCCCCccceEEEEcCCCC--EEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEEC
Confidence            7777764      235889998764  12222111111  112222 266777777653     3577899887653332


Q ss_pred             eeccCCCCCCCCeeEEEeCCCCCEEEEEecC--------------CcEEEEEcccceEEEe
Q 016458          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSN--------------GDCYVWDTLLAKVVLN  334 (389)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~~~~  334 (389)
                      -.....   ......+.  .++++++.|+.+              ..+.+||+.+.+-...
T Consensus       238 ~~~p~~---r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          238 TEFPQE---RSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             CCCSSC---CBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             CCCCCc---ccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            111111   11112222  256777776653              3588889877654433

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.00086  Score=55.70  Aligned_cols=199  Identities=9%  Similarity=0.016  Sum_probs=103.8

Q ss_pred             cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee--CCCCcEEEEe-eCCCceEEEeCCCCCcceeEEee
Q 016458          172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS--GSNSRMFVSG-SCDSTARLWDTRVASRAVRTFHG  248 (389)
Q Consensus       172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~  248 (389)
                      .+++.++.||.|.-+|..+|+....+...    ...++....-.  +.++..++.. +.||.|..++..++ .....+..
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~----~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G-~~~~~~~~   85 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPE----NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG-LQKLPLSI   85 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGG----GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE-EEEEEEEH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCC----ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC-cEEeeecc
Confidence            47899999999999999999999988432    11122221100  1123444444 68999999998765 22222211


Q ss_pred             e----ccceEE---EEE-e----cCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCC--CeeEEE---e--CCCC
Q 016458          249 H----EGDVNT---VKF-F----PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP--HVTSIA---F--SISG  309 (389)
Q Consensus       249 ~----~~~i~~---~~~-~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~i~~~~---~--~~~~  309 (389)
                      .    ..++..   ... .    ..+..+++|+.+|.+...|+++|+.+..+..........  ...+..   +  ...+
T Consensus        86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~  165 (339)
T 2be1_A           86 RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE  165 (339)
T ss_dssp             HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred             ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence            1    111111   000 0    145678999999999999999999998886543211000  000111   1  0124


Q ss_pred             CEEEEEecCCcEEEEEcccceEEEeecCcC-CCC--CCCe-eEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          310 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ-NSH--EGRI-TCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~--~~~v-~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      ..|+.+..+..+.+.+ ++++ ...+.... ...  ..++ .+-..+.|+.+ +.++.||.|.-    .|..+|+..
T Consensus       166 ~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A----~d~~~G~~~  235 (339)
T 2be1_A          166 NMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLA----SDLDFRIAR  235 (339)
T ss_dssp             CEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEE----ECSTTCCEE
T ss_pred             CeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEE----EECCCCcEE
Confidence            5677777766666666 3443 22211000 000  0000 00011234555 44677777777    777766654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.32  E-value=0.024  Score=55.79  Aligned_cols=237  Identities=11%  Similarity=0.096  Sum_probs=132.9

Q ss_pred             EcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeee
Q 016458           75 WTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML  154 (389)
Q Consensus        75 ~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  154 (389)
                      .+|..+.+|.=. ..++.|||+++...+..+..+. +|..-.|-.....-+++  +..|.-|++.....      +.+.+
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lVT--~~aVyHW~~~~~s~------P~k~f  142 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT--DNAVYHWSMEGESQ------PVKMF  142 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEEc--CCeEEEeccCCCCc------cHHHH
Confidence            456666666554 5789999999998888877654 47777776544443332  45799999975221      22222


Q ss_pred             ccc----ccceEEEEEeeCCCcEEEEee------CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee--CCCCcEE
Q 016458          155 SGH----KGYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS--GSNSRMF  222 (389)
Q Consensus       155 ~~~----~~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l  222 (389)
                      ..|    ...|..-..+++..-++++|-      -.|.+.+|..+.+.... +     .+|......+...  +....++
T Consensus       143 dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~-i-----egha~~F~~~~~~~~~~~~~l~  216 (1630)
T 1xi4_A          143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-I-----EGHAASFAQFKMEGNAEESTLF  216 (1630)
T ss_pred             hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh-h-----hHhHhhhheeccCCCCCCceEE
Confidence            222    345666666676644444443      35788888877653321 2     3443333333222  1112233


Q ss_pred             EEeeC---CCceEEEeCCCC--C-cc-----eeEEee---eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEe
Q 016458          223 VSGSC---DSTARLWDTRVA--S-RA-----VRTFHG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY  288 (389)
Q Consensus       223 ~~~~~---dg~i~i~d~~~~--~-~~-----~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  288 (389)
                      +.+..   .+.++|.++...  + .+     +..+.+   ...-..++..++....+...+.-|.|.+||+.++..+..-
T Consensus       217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence            22221   368888888543  1 11     111111   1233456778887788899999999999999999877654


Q ss_pred             eccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE
Q 016458          289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  332 (389)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  332 (389)
                      ......     |-..+......-+++....|.|.-..+.....+
T Consensus       297 ris~~~-----iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv  335 (1630)
T 1xi4_A          297 RISGET-----IFVTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (1630)
T ss_pred             cccCCc-----eEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence            433221     333333332223333346666655555444433

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.30  E-value=0.015  Score=48.25  Aligned_cols=198  Identities=13%  Similarity=0.046  Sum_probs=105.2

Q ss_pred             CeEEEEecCCcEEEEeCCCCCeeEEEeeCC-CcEEEEEE--CC-CCcEEEEe-cCCCcEEEEeCCCCCCCCCCCcceeee
Q 016458           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAF--SP-TGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRML  154 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~--~~-~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~  154 (389)
                      ..++.++.||.|.-.|..+|+....+.... .++....-  .+ ++..++.. +.||.+..++..++..     ......
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~-----~~~~~~   85 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ-----KLPLSI   85 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE-----EEEEEH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE-----Eeeecc
Confidence            378899999999999999999998887651 22222110  01 23334443 5799999998776421     011111


Q ss_pred             cc--cccceEE---EEE-----eeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCC--CCeeEEEee----CCC
Q 016458          155 SG--HKGYVSC---CQY-----VPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT--ADVLSVSIS----GSN  218 (389)
Q Consensus       155 ~~--~~~~v~~---~~~-----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~~----~~~  218 (389)
                      ..  ...++..   ...     ... +..+++|+.+|.+...|+.+|+.+..+.......+-  ....|....    ...
T Consensus        86 ~~lv~~SP~~~~~~pvv~~~~~~~~-~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~  164 (339)
T 2be1_A           86 RQLVSTSPLHLKTNIVVNDSGKIVE-DEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQEC  164 (339)
T ss_dssp             HHHHTTCSEEEECC----------C-CEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------
T ss_pred             ccceeccccccCCCceeeccccccc-CCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccC
Confidence            10  1111211   000     002 357899999999999999999999998532111100  000011110    012


Q ss_pred             CcEEEEeeCCCceEEEeCCCCCcce-eEEeeeccc-eE-----EEEEecCCCEEEEEecCCeEEEEECCCCceee
Q 016458          219 SRMFVSGSCDSTARLWDTRVASRAV-RTFHGHEGD-VN-----TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ  286 (389)
Q Consensus       219 ~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~-i~-----~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  286 (389)
                      +..++.+..+..+.+.+ +++ +.. ..+...... +.     .-..+.++.+ +.++.||.|.-+|..++..+.
T Consensus       165 ~~~v~ig~~~y~v~~~~-~sG-~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          165 ENMIVIGKTIFELGIHS-YDG-ASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             CCEEEEEEEEEECEECC-TTS-CCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             CCeEEEecceEEEEEEC-CCC-CeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            34677777777777776 333 211 111110000 00     0001123555 557889999999988888664

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.29  E-value=0.06  Score=44.98  Aligned_cols=241  Identities=11%  Similarity=0.085  Sum_probs=125.9

Q ss_pred             CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceee----ecccccceEEEEEeeC---CCcEEEEe--e
Q 016458          108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM----LSGHKGYVSCCQYVPD---EDTHLITS--S  178 (389)
Q Consensus       108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~---~~~~l~~~--~  178 (389)
                      .-.....|+|.|+|.++++-...|.|++++...+..     .....    ..........|+++|+   +..+.++-  .
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-----~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~  104 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-----TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA  104 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-----eeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence            345678999999999877776689999887654321     11111    1223456789999985   22333321  2


Q ss_pred             CCCeEEEEeCCCCe--------eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-------------CCceEEEeCC
Q 016458          179 GDQTCVLWDITTGL--------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-------------DSTARLWDTR  237 (389)
Q Consensus       179 ~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~  237 (389)
                      .++.|.-|.+..+.        ....+. ............+.|.| ++.++++.+.             .|.|.-++..
T Consensus       105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~-~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d  182 (347)
T 3das_A          105 SDNRIVRMLYDEKKPSGEQLGAPDTVFR-GIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD  182 (347)
T ss_dssp             SSEEEEEEEBCTTSCTTCCBCCCEEEEE-EECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred             CCCEEEEEEeCCCCcccccCCCcEEEEE-cCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence            45567777665421        111110 01011222356789998 6777776542             3445444544


Q ss_pred             CCC---c---ceeE-EeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCcee------------------eEeecc
Q 016458          238 VAS---R---AVRT-FHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQL------------------QVYYQQ  291 (389)
Q Consensus       238 ~~~---~---~~~~-~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~------------------~~~~~~  291 (389)
                      ..-   .   .... -.+|.+ ...++|+|++.+.++=. .|+.=.+--+..+...                  ..+.. 
T Consensus       183 G~ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~-  260 (347)
T 3das_A          183 GEPAPGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST-  260 (347)
T ss_dssp             SSBCTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT-
T ss_pred             CCccCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC-
Confidence            210   0   1112 224443 46899999877655432 2332222222222110                  00000 


Q ss_pred             CCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeee
Q 016458          292 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS  362 (389)
Q Consensus       292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  362 (389)
                          .......++|. +|..+......+.|....+...........+.....+.+.+|+..|||.++++..
T Consensus       261 ----~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          261 ----DEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             ----TTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             ----CCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence                00124567775 4556666666667777777654432111111134457899999999998766643

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.23  E-value=0.014  Score=44.70  Aligned_cols=149  Identities=11%  Similarity=0.048  Sum_probs=79.3

Q ss_pred             cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE------EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceE
Q 016458          159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT------SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR  232 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  232 (389)
                      ..+.+++|+|++ . |++. .+|.+.-.+..+....      ..+..   .+-. ...++.|.| ++.+.++  .||.|+
T Consensus        41 ~~~~~laf~P~G-~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~---~Gw~-~F~a~~fD~-~G~LYav--~dG~iy  110 (236)
T 1tl2_A           41 SNFKFLFLSPGG-E-LYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGN---GGWN-QFQFLFFDP-NGYLYAV--SKDKLY  110 (236)
T ss_dssp             TTCSEEEECTTS-C-EEEE-ETTEEEEESCCCSTTCCHHHHCEEEEC---SCGG-GCSEEEECT-TSCEEEE--ETTEEE
T ss_pred             ccceeEEECCCc-c-EEEE-eCCeEEEECCCCCCcccccccccEecc---cccc-cceEEEECC-CCCEEEe--CCCEEE
Confidence            367799999976 4 4444 7788777776542111      11100   0111 147888888 7777776  569888


Q ss_pred             EEeCCCCCcce-----eEE-eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeec--cCCCCCCCCeeEEE
Q 016458          233 LWDTRVASRAV-----RTF-HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ--QHGENEIPHVTSIA  304 (389)
Q Consensus       233 i~d~~~~~~~~-----~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~i~~~~  304 (389)
                      -++..+....-     ..+ ..-=..+..|.|.|+|.+.++.  |+.++-....+.....-+..  ......-.....+.
T Consensus       111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~  188 (236)
T 1tl2_A          111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLF  188 (236)
T ss_dssp             EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEE
T ss_pred             EeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEE
Confidence            77754321110     011 1111467999999999877666  77765433332111000000  00000011244566


Q ss_pred             eCCCCCEEEEEecCCcE
Q 016458          305 FSISGRLLFAGYSNGDC  321 (389)
Q Consensus       305 ~~~~~~~l~~~~~dg~i  321 (389)
                      |++++.+.++.  +|.+
T Consensus       189 f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          189 FSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             ECTTSCEEEEE--TTEE
T ss_pred             ECCCCcEEEEe--CCeE
Confidence            88888776665  6633

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.15  E-value=0.056  Score=45.61  Aligned_cols=198  Identities=10%  Similarity=0.040  Sum_probs=93.3

Q ss_pred             CCCeEEEEec-C---------CcEEEEeCCCCCeeEEE--e-eCCCcEEEEEECCCCcEEEEecCC--------------
Q 016458           78 ERNRIVSASQ-D---------GRLIVWNALTSQKTHAI--K-LPCAWVMTCAFSPTGQSVACGGLD--------------  130 (389)
Q Consensus        78 ~~~~l~~~~~-d---------g~v~iw~~~~~~~~~~~--~-~~~~~v~~~~~~~~~~~l~~~~~d--------------  130 (389)
                      ++.+++.|+. +         ..+.+||..+.+-....  . .......++.  .++++++.|+.+              
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~  142 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA  142 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence            4566666665 2         46888888775432211  1 1111122222  467888888764              


Q ss_pred             -------------------------CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC------
Q 016458          131 -------------------------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG------  179 (389)
Q Consensus       131 -------------------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------  179 (389)
                                               ..+.+||..+..     +.....+......-.+++.. + +.+++.|+.      
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~-----W~~~~~~p~~~~~~~~~~~~-~-~~iyv~GG~~~~~~~  215 (357)
T 2uvk_A          143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQ-----WSYAGESPWYGTAGAAVVNK-G-DKTWLINGEAKPGLR  215 (357)
T ss_dssp             TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTE-----EEEEEECSSCCCBSCEEEEE-T-TEEEEECCEEETTEE
T ss_pred             CCcccchhhhhhhhccccccccCCcccEEEEeCCCCc-----EEECCCCCCCCcccccEEEE-C-CEEEEEeeecCCCcc
Confidence                                     468888887633     22222221111110222222 3 366777664      


Q ss_pred             CCeEEEEeC--CCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC----------------------CceEEEe
Q 016458          180 DQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----------------------STARLWD  235 (389)
Q Consensus       180 dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------------------g~i~i~d  235 (389)
                      ...+..||+  .+..-...-.  ........-.+++..  ++.+++.|+.+                      ..+.+||
T Consensus       216 ~~~v~~~d~d~~~~~W~~~~~--~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd  291 (357)
T 2uvk_A          216 TDAVFELDFTGNNLKWNKLAP--VSSPDGVAGGFAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHL  291 (357)
T ss_dssp             CCCEEEEECC---CEEEECCC--SSTTTCCBSCEEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEE
T ss_pred             cCceEEEEecCCCCcEEecCC--CCCCcccccceEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEe
Confidence            345777887  4443322211  101111111223333  56777877742                      2577899


Q ss_pred             CCCCCcceeEEeeeccc-eEEEEEecCCCEEEEEecCC------eEEEEECCCCceeeEeec
Q 016458          236 TRVASRAVRTFHGHEGD-VNTVKFFPDGNRFGTGSDDG------TCRLFDIRTGHQLQVYYQ  290 (389)
Q Consensus       236 ~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~  290 (389)
                      +.+. . ...+.....+ ....+...++++++.|+.++      .|.++++++++.......
T Consensus       292 ~~~~-~-W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~  351 (357)
T 2uvk_A          292 WHNG-K-WDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE  351 (357)
T ss_dssp             CC-----CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred             cCCC-c-eeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence            8754 1 1122111111 11122234678888888543      466678887776655444

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.11  E-value=0.032  Score=42.78  Aligned_cols=180  Identities=10%  Similarity=0.051  Sum_probs=95.4

Q ss_pred             cEEEEeeCCCeEEEEeCCCCe------eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc----
Q 016458          172 THLITSSGDQTCVLWDITTGL------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR----  241 (389)
Q Consensus       172 ~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----  241 (389)
                      .+|+....| +++.=....+.      ....+.    ..-=..+..++|+| ++.+.++  .+|.++-.+..+...    
T Consensus         5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG----~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~   76 (236)
T 1tl2_A            5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIG----KGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWM   76 (236)
T ss_dssp             CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEE----SSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHH
T ss_pred             eEEEEEeCC-cEEecCCCCCcccchhhhccccC----ccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCccccc
Confidence            456666666 65554444333      112221    11123677999999 8887776  678777766543211    


Q ss_pred             -ceeEEe-eeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC--CCCCCCeeEEEeCCCCCEEEEEec
Q 016458          242 -AVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--ENEIPHVTSIAFSISGRLLFAGYS  317 (389)
Q Consensus       242 -~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~  317 (389)
                       .-..+- .--....++.|.|+|.+.++  .||.|+-++-.+...-.-+.....  ...-..+..+.|.|+|.+.++.  
T Consensus        77 ~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--  152 (236)
T 1tl2_A           77 GRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--  152 (236)
T ss_dssp             HHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--
T ss_pred             ccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--
Confidence             111110 00112478999999987777  669998887543221111100000  0000137899999999877776  


Q ss_pred             CCcEEEEEcccce------EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458          318 NGDCYVWDTLLAK------VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK  368 (389)
Q Consensus       318 dg~i~i~d~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  368 (389)
                      |+.++-....+..      ....+.   ...-..-.-+.|.+++.+.++.  +|.+.
T Consensus       153 dg~lyr~~~P~~~~~~wl~~~~~~g---~~g~~~yr~l~f~~~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          153 GQQFYKALPPVSNQDNWLARATKIG---QGGWDTFKFLFFSSVGTLFGVQ--GGKFY  204 (236)
T ss_dssp             TTEEEEECCCSSTTCCHHHHCEEEE---SSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CCcEEecCCCCCCCcccccccceec---cCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence            7775433222110      001110   1222234557799999776665  77554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.03  E-value=0.13  Score=47.73  Aligned_cols=202  Identities=12%  Similarity=0.094  Sum_probs=104.7

Q ss_pred             CCCCeEEEEecC----CcEEEEeCCCCCeeEEE-e-----eCC--CcEEEEEECCCCcEEEEecCC------CcEEEEeC
Q 016458           77 SERNRIVSASQD----GRLIVWNALTSQKTHAI-K-----LPC--AWVMTCAFSPTGQSVACGGLD------SVCSIFNL  138 (389)
Q Consensus        77 ~~~~~l~~~~~d----g~v~iw~~~~~~~~~~~-~-----~~~--~~v~~~~~~~~~~~l~~~~~d------g~i~vw~~  138 (389)
                      .++..++.|+.+    ..+.+||..+.+-...- .     .+.  ..-..+.+..+++.++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777753    46888898776544332 1     111  122333333277788888754      35778888


Q ss_pred             CCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC--eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458          139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (389)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  216 (389)
                      .+..     +.....+....... +++...++ .+++.|+.++  .+.+||+.+..-...-.............++.+..
T Consensus       476 ~t~~-----W~~~~~~p~~R~~h-~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~  548 (695)
T 2zwa_A          476 KTRE-----WSMIKSLSHTRFRH-SACSLPDG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDP  548 (695)
T ss_dssp             TTTE-----EEECCCCSBCCBSC-EEEECTTS-CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEET
T ss_pred             CCCc-----EEECCCCCCCcccc-eEEEEcCC-EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeC
Confidence            7632     11111111111111 22222243 6777887654  69999998876544321000011122223355555


Q ss_pred             CCCcEEEEeeCC-------CceEEEeCCCCCc--c--eeEEeee--cc-ceEEEEEecCCCEEEEEecC--------CeE
Q 016458          217 SNSRMFVSGSCD-------STARLWDTRVASR--A--VRTFHGH--EG-DVNTVKFFPDGNRFGTGSDD--------GTC  274 (389)
Q Consensus       217 ~~~~~l~~~~~d-------g~i~i~d~~~~~~--~--~~~~~~~--~~-~i~~~~~~~~~~~l~~~~~d--------g~i  274 (389)
                      ..+.+++.|+.+       ..+..||+.+..-  .  ...+...  .. .-.+++...++++++.|+.+        ..+
T Consensus       549 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v  628 (695)
T 2zwa_A          549 VSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSI  628 (695)
T ss_dssp             TTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSE
T ss_pred             CCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeE
Confidence            336788888762       3588899887631  0  1222111  11 11223333337777888743        459


Q ss_pred             EEEECCCCcee
Q 016458          275 RLFDIRTGHQL  285 (389)
Q Consensus       275 ~i~d~~~~~~~  285 (389)
                      .+||+.+.+-.
T Consensus       629 ~~yd~~t~~W~  639 (695)
T 2zwa_A          629 ISLDPLSETLT  639 (695)
T ss_dssp             EEEETTTTEEE
T ss_pred             EEEECCCCeEE
Confidence            99999876543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.85  E-value=0.15  Score=41.84  Aligned_cols=140  Identities=6%  Similarity=-0.053  Sum_probs=78.4

Q ss_pred             EEeeCCCcEEEEeeCC-------------CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee--CCC
Q 016458          165 QYVPDEDTHLITSSGD-------------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS--CDS  229 (389)
Q Consensus       165 ~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg  229 (389)
                      -++++++.+.++...+             ..|+..++.........      ..  .  ...+++ .++.|+-..  .++
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~------~~--~--~~~~s~-~g~~Iy~~~~~~~~  127 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD------PD--P--CIYASL-IGNYIYYLHYDTQT  127 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE------CS--C--EEEEEE-ETTEEEEEEESSSS
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee------cC--C--ccEEEE-eCCEEEEEeecCCC
Confidence            4567775555555443             46888888777644433      11  1  225566 445555444  334


Q ss_pred             --ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec-CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeC
Q 016458          230 --TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  306 (389)
Q Consensus       230 --~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  306 (389)
                        .|...++.  ......+..+..    .+++|+++.|+-.+. ...|...++..+.....+ .  ..     . ...+.
T Consensus       128 ~~~Iy~~~~d--Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~-~--~~-----~-~~~~~  192 (302)
T 3s25_A          128 ATSLYRIRID--GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY-D--CN-----C-YKPVV  192 (302)
T ss_dssp             CEEEEEEETT--SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE-C--SC-----E-EEEEE
T ss_pred             CceEEEEECC--CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe-C--CC-----c-cceee
Confidence              45555554  334445544432    456788888876654 678888888765543332 1  11     2 23456


Q ss_pred             CCCCEEEEEecCC--cEEEEEcccce
Q 016458          307 ISGRLLFAGYSNG--DCYVWDTLLAK  330 (389)
Q Consensus       307 ~~~~~l~~~~~dg--~i~i~d~~~~~  330 (389)
                      |++.+|+-...++  .|..-++....
T Consensus       193 P~g~~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          193 LDDTNVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred             ecCCEEEEEEcCCCcEEEEEECCCCC
Confidence            8888888765443  56666665444

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.80  E-value=0.25  Score=45.96  Aligned_cols=198  Identities=11%  Similarity=0.108  Sum_probs=101.1

Q ss_pred             CCCcEEEEecCC----CcEEEEeCCCCCCCCCCCccee-e-----ecccccceEEEEEee-CCCcEEEEeeCC------C
Q 016458          119 PTGQSVACGGLD----SVCSIFNLNSPTDKDGNLPVSR-M-----LSGHKGYVSCCQYVP-DEDTHLITSSGD------Q  181 (389)
Q Consensus       119 ~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~-~-----~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g  181 (389)
                      .++..++.|+.+    ..+.+||..+..     +.... .     ....... .+++..+ ++ .+++.|+.+      .
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~-----W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~-~lyv~GG~~~~~~~~~  468 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDK-----IDMKNIEVSSSEVPVARMC-HTFTTISRNN-QLLLIGGRKAPHQGLS  468 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSC-----EEEEECCCCCSCCCCCCBS-CEEEEETTTT-EEEEECCBSSTTCBCC
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCe-----EEEeccCCCCCCCCccccc-eEEEEEccCC-EEEEEcCCCCCCCccc
Confidence            456666667643    357788876632     11111 1     1111111 2233332 43 677777754      3


Q ss_pred             eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC--ceEEEeCCCCCcceeEEee------eccce
Q 016458          182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHG------HEGDV  253 (389)
Q Consensus       182 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~------~~~~i  253 (389)
                      .+.+||+.+..-...-..    .....-.+++... ++.+++.|+.++  .+.+||..+..  ...+..      .....
T Consensus       469 dv~~yd~~t~~W~~~~~~----p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~  541 (695)
T 2zwa_A          469 DNWIFDMKTREWSMIKSL----SHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVS  541 (695)
T ss_dssp             CCEEEETTTTEEEECCCC----SBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBS
T ss_pred             cEEEEeCCCCcEEECCCC----CCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccce
Confidence            588899988754443211    1111222333323 677888887655  68999987641  112111      11112


Q ss_pred             EEEEEecC-CCEEEEEec--C-----CeEEEEECCCCce-----eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec---
Q 016458          254 NTVKFFPD-GNRFGTGSD--D-----GTCRLFDIRTGHQ-----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---  317 (389)
Q Consensus       254 ~~~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---  317 (389)
                      .++.+..+ +++++.|+.  +     ..+.+||+.+...     -......... ... -.+++...++++++.|+.   
T Consensus       542 ~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~-~R~-~~~~~~~~~~~iyv~GG~~~~  619 (695)
T 2zwa_A          542 AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF-QRY-GSQIKYITPRKLLIVGGTSPS  619 (695)
T ss_dssp             CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGG-CCB-SCEEEEEETTEEEEECCBCSS
T ss_pred             eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCC-Ccc-cceEEEeCCCEEEEECCccCC
Confidence            33555554 667777775  2     4589999988761     1111110000 001 112233333677777764   


Q ss_pred             -----CCcEEEEEcccceEE
Q 016458          318 -----NGDCYVWDTLLAKVV  332 (389)
Q Consensus       318 -----dg~i~i~d~~~~~~~  332 (389)
                           ...+.+||+.+.+-.
T Consensus       620 ~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          620 GLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             CCCCTTTSEEEEETTTTEEE
T ss_pred             CCCCCCCeEEEEECCCCeEE
Confidence                 346999999877654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.73  E-value=0.094  Score=45.86  Aligned_cols=110  Identities=13%  Similarity=0.067  Sum_probs=64.3

Q ss_pred             cceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC---CCCCCCeeEEEeCCC---CCEEEEEec-------
Q 016458          251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG---ENEIPHVTSIAFSIS---GRLLFAGYS-------  317 (389)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~---~~~l~~~~~-------  317 (389)
                      .....++|.|+|+++++-...+.|++++..++...........   ......+..++|+|+   +..|++...       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            3567999999998777654445798888665543322211111   012335789999996   555555543       


Q ss_pred             ------CCcEEEEEcccc-------eEEEe-ecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458          318 ------NGDCYVWDTLLA-------KVVLN-LGSLQNSHEGRITCLGLSADGSALCTGSW  363 (389)
Q Consensus       318 ------dg~i~i~d~~~~-------~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  363 (389)
                            ...|.-|++...       +.+.. +.   .........|+|.|||.+.++.+.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p---~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP---SSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC---CCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCC---CCCCCCCCeEeECCCCeEEEEECC
Confidence                  134555654321       12221 21   122234789999999987777554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.48  E-value=0.39  Score=41.96  Aligned_cols=112  Identities=8%  Similarity=0.001  Sum_probs=60.8

Q ss_pred             CCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeec------ccccceEEEEEeeC---CCcEEEEeeC
Q 016458          109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS------GHKGYVSCCQYVPD---EDTHLITSSG  179 (389)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~~l~~~~~  179 (389)
                      -.....|+|.|+|+++++-...+.|.+++...+.     ......+.      .....+..|+|+|+   +..+.++-+.
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~-----~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~  100 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGS-----VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTF  100 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc-----EeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEec
Confidence            3457899999999977776554578888754322     11111111      12356779999995   4344444332


Q ss_pred             ------------CCeEEEEeCCCC--ee--EEEecCcccCCCCCCeeEEEeeCCCCcEEEEee
Q 016458          180 ------------DQTCVLWDITTG--LR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS  226 (389)
Q Consensus       180 ------------dg~i~iwd~~~~--~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  226 (389)
                                  ...|..++....  ..  ...+..............++|.| ++.++++.+
T Consensus       101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~G  162 (454)
T 1cru_A          101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIG  162 (454)
T ss_dssp             ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEEC
T ss_pred             cccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEEC
Confidence                        235666665432  11  11111001112223478999999 667766644

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=96.26  E-value=0.47  Score=40.56  Aligned_cols=270  Identities=9%  Similarity=-0.022  Sum_probs=122.0

Q ss_pred             CcEEEEEEcC-CCCeEEEEecCC----cEEEEeCCCCCeeEEEee--------------CCCcEEEEEECCC--CcEEEE
Q 016458           68 GKVYSLDWTS-ERNRIVSASQDG----RLIVWNALTSQKTHAIKL--------------PCAWVMTCAFSPT--GQSVAC  126 (389)
Q Consensus        68 ~~v~~~~~~~-~~~~l~~~~~dg----~v~iw~~~~~~~~~~~~~--------------~~~~v~~~~~~~~--~~~l~~  126 (389)
                      ..|.+|+++| +...|..++..|    .|...+ ..++.-..+..              ....|.++++.|.  ...+.+
T Consensus        55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~  133 (394)
T 3b7f_A           55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA  133 (394)
T ss_dssp             SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred             CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence            4699999998 233444454444    343322 23332222211              1124778999872  455666


Q ss_pred             ecCCCcEEEEeCCCCCCCCCCCcceeeec----------------ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC
Q 016458          127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLS----------------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT  190 (389)
Q Consensus       127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  190 (389)
                      ++..+.|...  ..+.   ..+.......                .....+.+|.+.|..+..++.+..++.|...+- .
T Consensus       134 g~~~ggl~~S--~DgG---~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-g  207 (394)
T 3b7f_A          134 GTSPQGLFRS--TDHG---ASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-A  207 (394)
T ss_dssp             EEETTEEEEE--SSTT---SBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-T
T ss_pred             EecCCcEEEE--cCCC---CCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-C
Confidence            6555554433  2211   1111111110                112357888888754445566655554544432 2


Q ss_pred             CeeEEEecCcccCC--------CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee--ec---cceEEEE
Q 016458          191 GLRTSVFGGEFQSG--------HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HE---GDVNTVK  257 (389)
Q Consensus       191 ~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~---~~i~~~~  257 (389)
                      ++.-..+.......        ....+.++.+.|.+...++++...+ |...+-.  ......+..  ..   ..+.+++
T Consensus       208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~--G~tW~~~~~~l~~~~~~~~~~i~  284 (394)
T 3b7f_A          208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRR--EGVWKRIGDAMPREVGDIGFPIV  284 (394)
T ss_dssp             TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETT--TTEEECGGGGSCTTTCSCEEEEE
T ss_pred             CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCC--CCcceECCCCCCCCCccceEEEE
Confidence            22222221100000        0135889999986556777776544 4433321  122211111  11   2356788


Q ss_pred             Eec-CCCEEEEEec-----------CCeEEEEECCC-CceeeEeeccCCCCCC---CCeeEEEeCCC-CCEEEEEecCCc
Q 016458          258 FFP-DGNRFGTGSD-----------DGTCRLFDIRT-GHQLQVYYQQHGENEI---PHVTSIAFSIS-GRLLFAGYSNGD  320 (389)
Q Consensus       258 ~~~-~~~~l~~~~~-----------dg~i~i~d~~~-~~~~~~~~~~~~~~~~---~~i~~~~~~~~-~~~l~~~~~dg~  320 (389)
                      ++| +...|.++..           ++...+|...+ ++.-..+.........   .....++++|. ...|++++.++.
T Consensus       285 ~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~  364 (394)
T 3b7f_A          285 VHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGE  364 (394)
T ss_dssp             ECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSC
T ss_pred             ECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCe
Confidence            876 3344555432           23344555444 3333332211111000   01235778774 345666766665


Q ss_pred             EEEEEcccceEEEeecCcCCCCCCCeeEEEEC
Q 016458          321 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  352 (389)
Q Consensus       321 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  352 (389)
                      |..-+ ..++....+    ..+-..+.+++|.
T Consensus       365 l~~S~-D~G~tW~~~----~~~lp~~~~v~~~  391 (394)
T 3b7f_A          365 IWASA-DEGEHWQCI----ASHLPHIYAVQSA  391 (394)
T ss_dssp             EEEES-STTSBCEEE----ECSCSCEEEEEEE
T ss_pred             EEEEC-CCCCCceEc----ccCCCCeeEEEEe
Confidence            54332 334333333    2233456777663

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.04  E-value=0.69  Score=40.48  Aligned_cols=114  Identities=7%  Similarity=0.038  Sum_probs=59.4

Q ss_pred             CcEEEEEECCCCc-EEEEecCCCcEEEEeCCCCCCCCCCCcceeeec-----ccccceEEEEEeeC---CCcEEEEeeC-
Q 016458          110 AWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-----GHKGYVSCCQYVPD---EDTHLITSSG-  179 (389)
Q Consensus       110 ~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~---~~~~l~~~~~-  179 (389)
                      .....|+|.|++. .|+++...|.|++++............+...+.     ........|+++|+   +..+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4578999999996 555666789999997543211000000000011     11356788999985   2133333221 


Q ss_pred             -C----------CeEEEEeCCCC----------eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458          180 -D----------QTCVLWDITTG----------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (389)
Q Consensus       180 -d----------g~i~iwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (389)
                       +          ..|.-|.+..+          +.+..+..   .........|.|.| ++.++++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~---~~~~H~g~~l~fgp-DG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE---LHRKHLGGQLLFGP-DGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE---SSSSSCEEEEEECT-TSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC---CCCcccCCcEeECC-CCcEEEEeCC
Confidence             1          14545655421          22222211   12223467899999 6777666554

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.95  E-value=0.51  Score=38.20  Aligned_cols=223  Identities=13%  Similarity=0.056  Sum_probs=115.4

Q ss_pred             cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC
Q 016458           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL  148 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  148 (389)
                      .|..++..... .++. . ||.|..|-......+.........|..++....... +. . ||.|..|-.........  
T Consensus        25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~-~l-~-~G~v~~wG~n~~Gqlg~--   96 (282)
T 3qhy_B           25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSL-AL-K-DGEVIAWGGNEDGQTTV--   96 (282)
T ss_dssp             SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEE-EE-E-TTEEEEEECCTTSTTCC--
T ss_pred             CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEE-EE-E-CCEEEEeeCCCCCCCCC--
Confidence            46777765442 2333 4 899999965432222111111234666665543333 33 4 89999997665321111  


Q ss_pred             cceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC
Q 016458          149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  228 (389)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  228 (389)
                      +  .   .-...|..++....   ..+.-. +|.|..|-......+...     ......|..++...  ...++. . |
T Consensus        97 P--~---~~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg~~-----~~~~~~i~~i~~G~--~~~~~l-~-~  158 (282)
T 3qhy_B           97 P--A---EARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTTVP-----AEAQSGVTALDGGV--YTALAV-K-N  158 (282)
T ss_dssp             C--G---GGSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTSCC-----GGGGSSEEEEEECS--SEEEEE-E-T
T ss_pred             C--c---ccCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCCCC-----ccCCCCeEEEEccc--CEEEEE-E-C
Confidence            1  0   01235666665542   334445 999999976543222111     12334577776643  233333 3 7


Q ss_pred             CceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC
Q 016458          229 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS  308 (389)
Q Consensus       229 g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  308 (389)
                      |.|+.|-.....+.- ........|..++...+ ..++.  .||.|+.|-......+..-.     .....|..++-...
T Consensus       159 G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gqlg~p~-----~~~~~v~~i~~G~~  229 (282)
T 3qhy_B          159 GGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQTTVPT-----EALSGVSAIASGEW  229 (282)
T ss_dssp             TEEEEEECCTTSTTS-CCGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTCCCG-----GGGSSCCEEEECSS
T ss_pred             CEEEEecCCCCCCCC-CceecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCCCCCCCc-----ccCCCceEEEcCCC
Confidence            999999766542221 11112345777766433 23333  69999999865533322111     11123677765443


Q ss_pred             CCEEEEEecCCcEEEEEcccc
Q 016458          309 GRLLFAGYSNGDCYVWDTLLA  329 (389)
Q Consensus       309 ~~~l~~~~~dg~i~i~d~~~~  329 (389)
                      . .++..  ||.|+.|-....
T Consensus       230 h-~~al~--~g~v~~wG~n~~  247 (282)
T 3qhy_B          230 Y-SLALK--NGKVIAWGSSRT  247 (282)
T ss_dssp             C-EEEEE--TTEEEEESTTCC
T ss_pred             E-EEEEE--CCEEEEecCCCC
Confidence            3 33333  899999976543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.50  E-value=0.37  Score=42.66  Aligned_cols=126  Identities=17%  Similarity=0.138  Sum_probs=75.3

Q ss_pred             ceEEEeCCCC---CcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCce-----e----eEeeccCCCCC
Q 016458          230 TARLWDTRVA---SRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQ-----L----QVYYQQHGENE  296 (389)
Q Consensus       230 ~i~i~d~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~-----~----~~~~~~~~~~~  296 (389)
                      .+.+.|.+..   ...+..+-+-......+.++|||+++++++ .+.++.++|++....     +    ..... . ...
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a-e-~e~  376 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG-E-PEL  376 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE-C-CBC
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe-e-ccC
Confidence            3566666641   123333334455667899999999988776 578999999874211     0    00000 0 011


Q ss_pred             CCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc----------eEEEeecCcCCCCCCCeeEEE------ECCCCCeEEe
Q 016458          297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----------KVVLNLGSLQNSHEGRITCLG------LSADGSALCT  360 (389)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~  360 (389)
                      .......+|.++|+...+-.-|..|.-|++...          ..+..+    ..|-. +-.+.      -.+||++|++
T Consensus       377 GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~----dv~Yq-pGH~~~~~get~~~dGk~lv~  451 (638)
T 3sbq_A          377 GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKL----DVHYQ-PGHLHASLCETNEADGKWLVA  451 (638)
T ss_dssp             CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEE----ECSSC-EEEEEETTTTSTTCCSCEEEE
T ss_pred             CCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeecc----ccccC-CcccccCCCccCCCCccEEEE
Confidence            123678899999955555568999999998754          344444    23322 22222      2468888888


Q ss_pred             ee
Q 016458          361 GS  362 (389)
Q Consensus       361 ~~  362 (389)
                      ..
T Consensus       452 ln  453 (638)
T 3sbq_A          452 LS  453 (638)
T ss_dssp             EE
T ss_pred             ec
Confidence            65

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.45  E-value=0.81  Score=37.00  Aligned_cols=222  Identities=12%  Similarity=0.034  Sum_probs=114.3

Q ss_pred             cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC
Q 016458          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT  190 (389)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  190 (389)
                      .|..++...... ++. . ||.|..|-........  .+.     .....|..++....  ..++. . ||.|..|-...
T Consensus        25 ~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg--~p~-----~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~   90 (282)
T 3qhy_B           25 GVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLT--MPA-----ATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNE   90 (282)
T ss_dssp             SCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTS--CCG-----GGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCT
T ss_pred             CCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCC--CCc-----cCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCC
Confidence            466666543322 233 4 8999999766532111  011     11235666655442  33444 4 89999997654


Q ss_pred             CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec
Q 016458          191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD  270 (389)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  270 (389)
                      .-.+.. +    ......|..++...  ...++ -. +|.|+.|-.....+.- ........|..++...+  ..+.-. 
T Consensus        91 ~Gqlg~-P----~~~~~~v~~ia~G~--~hs~a-l~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~--~~~~l~-  157 (282)
T 3qhy_B           91 DGQTTV-P----AEARSGVDAIAAGA--WASYA-LK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVY--TALAVK-  157 (282)
T ss_dssp             TSTTCC-C----GGGSSSEEEEEEET--TEEEE-EE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSS--EEEEEE-
T ss_pred             CCCCCC-C----cccCCCeEEEECcC--CEEEE-Ee-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccC--EEEEEE-
Confidence            322211 1    11234677777763  23333 34 9999999766542221 11112345766665433  333334 


Q ss_pred             CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEE
Q 016458          271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  350 (389)
Q Consensus       271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  350 (389)
                      ||.|..|-......+..-..     ....|..++..... .++.  .||.|+.|-......+..-    ......|..++
T Consensus       158 ~G~v~~wG~n~~gqlg~p~~-----~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p----~~~~~~v~~i~  225 (282)
T 3qhy_B          158 NGGVIAWGDNYFGQTTVPAE-----AQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVP----TEALSGVSAIA  225 (282)
T ss_dssp             TTEEEEEECCTTSTTSCCGG-----GGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCC----GGGGSSCCEEE
T ss_pred             CCEEEEecCCCCCCCCCcee-----cCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCC----cccCCCceEEE
Confidence            79999998665332221100     11237777654332 3333  5999999976542222111    11223577777


Q ss_pred             ECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          351 LSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       351 ~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      -..+- .++. . ||.+..    |-...
T Consensus       226 ~G~~h-~~al-~-~g~v~~----wG~n~  246 (282)
T 3qhy_B          226 SGEWY-SLAL-K-NGKVIA----WGSSR  246 (282)
T ss_dssp             ECSSC-EEEE-E-TTEEEE----ESTTC
T ss_pred             cCCCE-EEEE-E-CCEEEE----ecCCC
Confidence            55432 3333 3 888888    86654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.44  E-value=0.87  Score=37.25  Aligned_cols=177  Identities=6%  Similarity=-0.016  Sum_probs=96.9

Q ss_pred             EEEcCCCCeEEEEecC--------------CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec--C--CCcEE
Q 016458           73 LDWTSERNRIVSASQD--------------GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG--L--DSVCS  134 (389)
Q Consensus        73 ~~~~~~~~~l~~~~~d--------------g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--dg~i~  134 (389)
                      --+++++++|+-+...              ..|+..++..++... +...  .  ...|+++++.|+-..  .  +..|.
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceEE
Confidence            3457788887766543              357777776665433 2222  1  225677888888765  3  34455


Q ss_pred             EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEe
Q 016458          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI  214 (389)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  214 (389)
                      ..+++...        ...+..+..    ..++++++.++.+......|.+.++..+.....+     ..   ... ..+
T Consensus       133 ~~~~dGs~--------~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~-----~~---~~~-~~~  191 (302)
T 3s25_A          133 RIRIDGEE--------KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY-----DC---NCY-KPV  191 (302)
T ss_dssp             EEETTSCC--------CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE-----CS---CEE-EEE
T ss_pred             EEECCCCC--------eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe-----CC---Ccc-cee
Confidence            55555322        122222222    3467777665656555788999998877655444     21   112 235


Q ss_pred             eCCCCcEEEEeeCC--CceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe--cCCeEEEEECCCC
Q 016458          215 SGSNSRMFVSGSCD--STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRTG  282 (389)
Q Consensus       215 ~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~  282 (389)
                      .| .+..|+-...+  ..|..-++...  ....+.  ...+  ..|+|++.+|+-+.  ..+.|..-++...
T Consensus       192 ~P-~g~~iy~t~~~~~~~I~~~~ldG~--~~~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          192 VL-DDTNVYYMDVNRDNAIVHVNINNP--NPVVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             EE-ETTEEEEEEGGGTTEEEEECSSSC--CCEECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             ee-cCCEEEEEEcCCCcEEEEEECCCC--CeEEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence            57 44455444433  34555555533  233333  2233  34788888887653  3456777776543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=95.22  E-value=1.3  Score=37.86  Aligned_cols=280  Identities=10%  Similarity=-0.023  Sum_probs=125.8

Q ss_pred             CeEEEEecCCcEEEEeCCC-CCeeEEE--eeCCCcEEEEEECC-CCcEEEEecCCC--cEEEEeCCCCCCCCCCCcceee
Q 016458           80 NRIVSASQDGRLIVWNALT-SQKTHAI--KLPCAWVMTCAFSP-TGQSVACGGLDS--VCSIFNLNSPTDKDGNLPVSRM  153 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~-~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~  153 (389)
                      ..|..|+..| +.+++... +..-...  ......|.++++.| +...+.+++..|  .-.||......   ..+.....
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G---~tW~~~~~   98 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGG---GNWTEATR   98 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTT---SCCEECSB
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCC---CCceECCc
Confidence            3677777776 55555433 2222222  23345799999998 334444444444  01233322211   01111110


Q ss_pred             ---ecc--------cccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCeeEEEecCcc--c------------CCCCC
Q 016458          154 ---LSG--------HKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEF--Q------------SGHTA  207 (389)
Q Consensus       154 ---~~~--------~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~------------~~~~~  207 (389)
                         +..        ....|.++++.|.+ +..+++++..+.|...+-. +..-..+....  .            .....
T Consensus        99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~  177 (394)
T 3b7f_A           99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGP  177 (394)
T ss_dssp             CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred             cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCC
Confidence               110        12357788888743 3556776666666555322 22222221000  0            01224


Q ss_pred             CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee--e-----------ccceEEEEEecC-CCEEEEEecCCe
Q 016458          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--H-----------EGDVNTVKFFPD-GNRFGTGSDDGT  273 (389)
Q Consensus       208 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~-----------~~~i~~~~~~~~-~~~l~~~~~dg~  273 (389)
                      .+.++.+.|.+...++.+..++.|...+  ........+..  .           ...+.++.++|+ ...|+++...+ 
T Consensus       178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~--DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-  254 (394)
T 3b7f_A          178 KMHSILVDPRDPKHLYIGMSSGGVFEST--DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-  254 (394)
T ss_dssp             EEEEEEECTTCTTCEEEEEETBEEEEES--STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred             ceeEEEECCCCCCEEEEEECCCCEEEEC--CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence            5788999875444455554444444332  22222222210  0           124788999985 45677666544 


Q ss_pred             EEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC-CCEEEEEec-----------CCcEEEEEccc-ceEEEeecC-cC
Q 016458          274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYS-----------NGDCYVWDTLL-AKVVLNLGS-LQ  339 (389)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~-----------dg~i~i~d~~~-~~~~~~~~~-~~  339 (389)
                      |...+ ..++.-..+...........+..++++|. ...|+++..           ++...+|.... ++....+.. +.
T Consensus       255 l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp  333 (394)
T 3b7f_A          255 IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLP  333 (394)
T ss_dssp             EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSC
T ss_pred             EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCC
Confidence            44443 22333322221111100023567888763 344444432           33345565443 333222211 00


Q ss_pred             CCCC---CCeeEEEECCC-CCeEEeeeCCCeeE
Q 016458          340 NSHE---GRITCLGLSAD-GSALCTGSWDTNLK  368 (389)
Q Consensus       340 ~~~~---~~v~~~~~~~~-~~~l~~~~~dg~i~  368 (389)
                      ....   .....++++|. ...|+.++.++.|.
T Consensus       334 ~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~  366 (394)
T 3b7f_A          334 TDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIW  366 (394)
T ss_dssp             CSSCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred             CccccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence            1000   01246788874 45566666566554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.28  E-value=0.066  Score=47.17  Aligned_cols=110  Identities=11%  Similarity=0.001  Sum_probs=64.4

Q ss_pred             CCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc-----------ceeEEeeeccceEEEEEecCCCEEEEEecCCeEE
Q 016458          207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-----------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR  275 (389)
Q Consensus       207 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  275 (389)
                      .....+.++|+....++.|-.+.++.++|++....           .+..-..-.-.....+|.++|....+..-|..|.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence            34566788884444455556688999999874211           1111111233467899999996666677899999


Q ss_pred             EEECCCC----------ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458          276 LFDIRTG----------HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (389)
Q Consensus       276 i~d~~~~----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (389)
                      .|++...          ..+..+..+....|......-.-.++|++|++..
T Consensus       403 kWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             EEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            9998653          3344444443322211001112257888888865

>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1

Probab=91.94  E-value=0.51  Score=22.32  Aligned_cols=29  Identities=21%  Similarity=0.415  Sum_probs=23.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016458            3 SSVSELKERHAAAIETVNSLRERLKQKRQ   31 (389)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   31 (389)
                      +++..+.++....++|++..++++.+.+-
T Consensus         2 ekiaaikeeqaaieeeiqaikeeiaaiky   30 (36)
T 1bb1_B            2 EKIAAIKEEQAAIEEEIQAIKEEIAAIKY   30 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788888888889999888888877654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.90  E-value=6  Score=34.57  Aligned_cols=53  Identities=11%  Similarity=0.147  Sum_probs=35.1

Q ss_pred             CcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCC---CeeEEEe---e------CCCcEEEEEECCC
Q 016458           68 GKVYSLDWTSERN-RIVSASQDGRLIVWNALTS---QKTHAIK---L------PCAWVMTCAFSPT  120 (389)
Q Consensus        68 ~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~---~~~~~~~---~------~~~~v~~~~~~~~  120 (389)
                      ..-..|+|.|++. .|+++...|.|++++....   ..+..+.   .      .......|+|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            4567999999996 5666678899999975322   1222221   0      1346789999996

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=91.90  E-value=8.6  Score=36.36  Aligned_cols=157  Identities=6%  Similarity=-0.010  Sum_probs=76.4

Q ss_pred             cCcEEEEEEcCCC-CeEEEEecCCcEEEEeCCCCCeeEEEeeC-------CCcEEEEEECCC-CcEEEEecCCCc----E
Q 016458           67 AGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKLP-------CAWVMTCAFSPT-GQSVACGGLDSV----C  133 (389)
Q Consensus        67 ~~~v~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~~-~~~l~~~~~dg~----i  133 (389)
                      .+.|.+|+++|.. ..+++++..+.|...+ ..++.-..+..+       ...+.++++.|. ...++++..+..    -
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~   92 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA   92 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence            4589999999953 4666677666665544 334333333221       235999999984 344444432211    3


Q ss_pred             EEEeCCCCCCCCCCCcceee-ec-----ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCccc-CCCC
Q 016458          134 SIFNLNSPTDKDGNLPVSRM-LS-----GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ-SGHT  206 (389)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~-~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~  206 (389)
                      .||....+.   ..+..... +.     .....+..+++.|..+..++.+...+.|.. ....++.-........ ....
T Consensus        93 ~v~~S~DgG---~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~  168 (789)
T 1sqj_A           93 AFYVSEDRG---QSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNG  168 (789)
T ss_dssp             EEEEESSTT---SEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTT
T ss_pred             EEEEECCCC---CcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCC
Confidence            344333211   11111110 00     001134567777765456666664443321 2222333222211000 0112


Q ss_pred             CCeeEEEeeCCCCcEEEEeeCC
Q 016458          207 ADVLSVSISGSNSRMFVSGSCD  228 (389)
Q Consensus       207 ~~v~~~~~~~~~~~~l~~~~~d  228 (389)
                      ..+..+.++|.+...++++..+
T Consensus       169 ~~~~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          169 IGYTSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             TCEEEEEECTTSTTCEEEEESS
T ss_pred             CCeEEEEECCCCCCEEEEEEcC
Confidence            4578889988666666666654

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=91.89  E-value=5.2  Score=33.80  Aligned_cols=175  Identities=9%  Similarity=0.085  Sum_probs=96.4

Q ss_pred             CeEEEEeCCCC--eeEEEecCcc-cCCCCCCeeEEEee---CC---CCcEEEEee-CCCceEEEeCCCCCcceeEEe---
Q 016458          181 QTCVLWDITTG--LRTSVFGGEF-QSGHTADVLSVSIS---GS---NSRMFVSGS-CDSTARLWDTRVASRAVRTFH---  247 (389)
Q Consensus       181 g~i~iwd~~~~--~~~~~~~~~~-~~~~~~~v~~~~~~---~~---~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~---  247 (389)
                      -.|.+||+.+.  +.+..+.... .......+..+.+.   |.   ++.++..+. ..+.|.++|+.++ +..+...   
T Consensus       123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~-~swRv~~~~~  201 (381)
T 3q6k_A          123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQ-DSWNVTHPTF  201 (381)
T ss_dssp             CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTT-EEEEEECGGG
T ss_pred             ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCC-cEEEEccCCC
Confidence            35778888888  7777764321 12234567888887   21   134444443 4678999999876 3322221   


Q ss_pred             -----------ee----ccceEEEEEecC----CCEEEEEecCCeEEEEECC-----CCc---eeeEeeccCCCCCCCCe
Q 016458          248 -----------GH----EGDVNTVKFFPD----GNRFGTGSDDGTCRLFDIR-----TGH---QLQVYYQQHGENEIPHV  300 (389)
Q Consensus       248 -----------~~----~~~i~~~~~~~~----~~~l~~~~~dg~i~i~d~~-----~~~---~~~~~~~~~~~~~~~~i  300 (389)
                                 +.    ...+..++++|+    ++.|+-....+. ++|.+.     ...   .+..+-. .+  ....-
T Consensus       202 ~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~-kg--~~s~~  277 (381)
T 3q6k_A          202 KAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGN-RG--KYNDA  277 (381)
T ss_dssp             SCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEE-CC--TTCCE
T ss_pred             ccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeee-cC--CCCCc
Confidence                       11    236788999987    677776665442 333332     221   1111111 11  01123


Q ss_pred             eEEEeC-CCCCEEEEEecCCcEEEEEccc-c---eEEEeecCcCCCCCCCeeEEEECCCCCeEEeee
Q 016458          301 TSIAFS-ISGRLLFAGYSNGDCYVWDTLL-A---KVVLNLGSLQNSHEGRITCLGLSADGSALCTGS  362 (389)
Q Consensus       301 ~~~~~~-~~~~~l~~~~~dg~i~i~d~~~-~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  362 (389)
                      ..+++. .+|.++++--..+.|..|+..+ .   .....+..  ...-..+..+.+.++|.+.+..+
T Consensus       278 ~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~--d~~l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          278 IALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT--SSRFVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             EEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE--CTTCCSEEEEEECTTSCEEEEEC
T ss_pred             ceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE--CCCccccCeEEECCCCeEEEEEC
Confidence            456775 5777777777788999999865 1   11122210  12333577888877776555543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=90.35  E-value=14  Score=35.88  Aligned_cols=39  Identities=15%  Similarity=0.119  Sum_probs=33.3

Q ss_pred             ceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeec
Q 016458          252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ  290 (389)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  290 (389)
                      .+.+++..++..++++-+.|+++++|++.+++++.....
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            467777888888999999999999999999988877643

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=89.98  E-value=7  Score=31.95  Aligned_cols=242  Identities=10%  Similarity=0.032  Sum_probs=121.3

Q ss_pred             CCCCeEEEEecCCcEEEEeCCCCCeeE---------EEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC---CCCC
Q 016458           77 SERNRIVSASQDGRLIVWNALTSQKTH---------AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS---PTDK  144 (389)
Q Consensus        77 ~~~~~l~~~~~dg~v~iw~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~---~~~~  144 (389)
                      |+...+++.+.+|.|+--.+.+-+...         .+.. ...+..+........++..+..|.++-+....   ....
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~   79 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG   79 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence            345678889999999877654422211         1122 23344444444556677777788766555432   2111


Q ss_pred             CCCCcceeeec-ccccceEEEEEee--CCCcEEEEeeCCCeEEEEeCCCCee-----EEEecCcccCCCCCCeeEEEeeC
Q 016458          145 DGNLPVSRMLS-GHKGYVSCCQYVP--DEDTHLITSSGDQTCVLWDITTGLR-----TSVFGGEFQSGHTADVLSVSISG  216 (389)
Q Consensus       145 ~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~  216 (389)
                      ..-.+....+. .....|..+...+  +.+.+++..+..|.++...+..-..     ...+.    ....+.+..+....
T Consensus        80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~----l~~~d~lv~~~~~~  155 (307)
T 1zi0_A           80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIK----LVDGDELIGVDLTS  155 (307)
T ss_dssp             SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSC----CCTTCCEEEEEEEC
T ss_pred             CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEE----ECCCCEEEEEEEeC
Confidence            11111111111 1233455554432  2235788999999999987642111     11110    11225566655554


Q ss_pred             CCCcEEEEeeCCCceEEEeCCCCC---c---ce--eEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce----
Q 016458          217 SNSRMFVSGSCDSTARLWDTRVAS---R---AV--RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ----  284 (389)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~---~---~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----  284 (389)
                       +...++..+.+|.+..++...-.   .   -+  ..+. ....|.++...+++..+++.+..|.++-.++.....    
T Consensus       156 -~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg  233 (307)
T 1zi0_A          156 -GEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRA  233 (307)
T ss_dssp             -TTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTT
T ss_pred             -CCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCC
Confidence             44556677788888877764321   1   11  1121 234566665555566788889999988887643211    


Q ss_pred             ---eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458          285 ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (389)
Q Consensus       285 ---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (389)
                         ...+..   ......+..+....+...++..+.+|.+.-++...
T Consensus       234 ~kG~~~~~~---~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~  277 (307)
T 1zi0_A          234 TKGVISIKV---TERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE  277 (307)
T ss_dssp             SCCEESSCC---CTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred             CCCEEeeEe---cCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence               111111   01112344443333344555666777766666543

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=89.88  E-value=7.4  Score=32.12  Aligned_cols=242  Identities=8%  Similarity=0.026  Sum_probs=125.5

Q ss_pred             CeEEEEecCCcEEEEeCCCC-------CeeEEEee-CCCcEEEEEECCCCcEEEEecCCCcEEEEe---CCCCCCCCCCC
Q 016458           80 NRIVSASQDGRLIVWNALTS-------QKTHAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFN---LNSPTDKDGNL  148 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~---~~~~~~~~~~~  148 (389)
                      ..+++.+.+|.|+--.+.+-       .-...+.. ....+..+........|+.-+..|.++-..   +........-.
T Consensus         4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~   83 (327)
T 3uc1_A            4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ   83 (327)
T ss_dssp             EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred             cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence            46778888888886543221       11111111 123455554444555666666677765544   33221111111


Q ss_pred             cceeeec-ccccceEEEEEeeC--CCcEEEEeeCCCeEEEEeCCCCeeEE---EecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458          149 PVSRMLS-GHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLRTS---VFGGEFQSGHTADVLSVSISGSNSRMF  222 (389)
Q Consensus       149 ~~~~~~~-~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l  222 (389)
                      +....+. .....|..+...++  .+.+++..+.+|.++...+.......   .....  ....+.+..+.... ....+
T Consensus        84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~--lke~D~lv~~~~~~-~~d~i  160 (327)
T 3uc1_A           84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVN--LRDNDELVGAVLCS-AGDDL  160 (327)
T ss_dssp             EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCB--CCTTCCEEEEEEEC-TTCEE
T ss_pred             EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEE--ECCCCEEEEEEEec-CCCEE
Confidence            1111111 12345555544442  24689999999999998865422111   00000  12345566665554 44567


Q ss_pred             EEeeCCCceEEEeCC--CCC---c-----ceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce-------e
Q 016458          223 VSGSCDSTARLWDTR--VAS---R-----AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ-------L  285 (389)
Q Consensus       223 ~~~~~dg~i~i~d~~--~~~---~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~  285 (389)
                      +..+..|.+..+...  .-.   .     ....+. ....|.++...+++..++..+..|.++.-.+.....       .
T Consensus       161 ll~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~  239 (327)
T 3uc1_A          161 LLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGV  239 (327)
T ss_dssp             EEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred             EEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcE
Confidence            777888988887766  221   1     111121 234566666666677899999999999887654222       1


Q ss_pred             eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (389)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (389)
                      ..+....   ....+..+....+...++..+.+|.+.-++...
T Consensus       240 ~~~~l~~---~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~  279 (327)
T 3uc1_A          240 LTVMYDR---RRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ  279 (327)
T ss_dssp             ESSCCCT---TTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred             EEEEecC---CCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence            1121111   011244444444455677777888888787643

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=89.61  E-value=14  Score=34.93  Aligned_cols=159  Identities=10%  Similarity=0.076  Sum_probs=82.3

Q ss_pred             ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC--CCCCeeEEEeeCCCCcEEEEeeCCCc----e
Q 016458          158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG--HTADVLSVSISGSNSRMFVSGSCDST----A  231 (389)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~----i  231 (389)
                      .+.|.+|.++|..+..+++++..+.|...+= .++.-..+.......  ....+.++++.|.+.+.++++..+..    -
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~   92 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA   92 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence            4689999999987778888888787766552 333333321100000  13469999999855565655543322    3


Q ss_pred             EEEeCCCCCcceeEEeee-------c--cceEEEEEecC-CCEEEEEecCCeEEEEECCCCceeeEeeccCC-CCCCCCe
Q 016458          232 RLWDTRVASRAVRTFHGH-------E--GDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG-ENEIPHV  300 (389)
Q Consensus       232 ~i~d~~~~~~~~~~~~~~-------~--~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~i  300 (389)
                      .||-.....+.-......       .  ..+..++++|. ...++.+...+.|. .....++.-........ ......+
T Consensus        93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~  171 (789)
T 1sqj_A           93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY  171 (789)
T ss_dssp             EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred             EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence            455444433333333210       0  13456888873 45666666444332 22222332222221100 0011347


Q ss_pred             eEEEeCCC-CCEEEEEecC
Q 016458          301 TSIAFSIS-GRLLFAGYSN  318 (389)
Q Consensus       301 ~~~~~~~~-~~~l~~~~~d  318 (389)
                      ..+.++|. +..++++..+
T Consensus       172 ~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          172 TSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             EEEEECTTSTTCEEEEESS
T ss_pred             EEEEECCCCCCEEEEEEcC
Confidence            88999884 4466666554

>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}

Probab=89.12  E-value=0.83  Score=20.30  Aligned_cols=25  Identities=16%  Similarity=0.299  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458            5 VSELKERHAAAIETVNSLRERLKQK   29 (389)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~   29 (389)
                      +.++.++...+++|+..++-++.+.
T Consensus         2 irrlkqknarlkqeiaaleyeiaal   26 (28)
T 3ra3_B            2 IRRLKQKNARLKQEIAALEYEIAAL   26 (28)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence            4567777777777777777776654

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=89.09  E-value=1.2  Score=21.78  Aligned_cols=31  Identities=3%  Similarity=0.124  Sum_probs=23.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458            3 SSVSELKERHAAAIETVNSLRERLKQKRQQL   33 (389)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   33 (389)
                      ++|.+|+.+.+++-.+...|+.+....+.-+
T Consensus         1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk~ll   31 (34)
T 3c3f_A            1 XRMXQIEXKLEXILSXLYHXENEXARIXKLL   31 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            4678888888888888888888887776543

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=89.04  E-value=1.2  Score=22.17  Aligned_cols=31  Identities=13%  Similarity=0.245  Sum_probs=20.9

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458            3 SSVSELKERHAAAIETVNSLRERLKQKRQQL   33 (389)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   33 (389)
                      ++|.||+.+.+++..+...|+.+...++..+
T Consensus         1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll   31 (36)
T 1kd8_B            1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKN   31 (36)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            3567777777777777777777776666543

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=88.91  E-value=1.2  Score=21.72  Aligned_cols=29  Identities=7%  Similarity=0.188  Sum_probs=18.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016458            4 SVSELKERHAAAIETVNSLRERLKQKRQQ   32 (389)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   32 (389)
                      +|.+|+++.+++..+...|+.+...++.-
T Consensus         1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~L   29 (33)
T 3m48_A            1 RMAQLEAKVEELLSKNWNLENEVARLKKL   29 (33)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            35667777777777777777777666554

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=88.84  E-value=1  Score=25.43  Aligned_cols=32  Identities=19%  Similarity=0.199  Sum_probs=27.7

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016458            3 SSVSELKERHAAAIETVNSLRERLKQKRQQLL   34 (389)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   34 (389)
                      +.++.|+.+..+++.++..|.++.++.+.++.
T Consensus        19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~   50 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA   50 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46889999999999999999999999887765

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=88.69  E-value=1.3  Score=21.71  Aligned_cols=31  Identities=6%  Similarity=0.199  Sum_probs=23.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458            3 SSVSELKERHAAAIETVNSLRERLKQKRQQL   33 (389)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   33 (389)
                      ++|.+|+++.+.+-.+-+.|+.+...++.-+
T Consensus         1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk~ll   31 (34)
T 2oxj_A            1 XRMXQLEXKVXELLXKNXHLEXEVXRLKXLV   31 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            4678888888888888888888877776543

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=88.43  E-value=1.1  Score=20.73  Aligned_cols=28  Identities=21%  Similarity=0.319  Sum_probs=19.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016458            4 SVSELKERHAAAIETVNSLRERLKQKRQ   31 (389)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~   31 (389)
                      .+..+.+++..++.|+..++-++.++++
T Consensus         3 eiaalkqeiaalkkeiaalkfeiaalkq   30 (33)
T 4dzn_A            3 EIAALKQEIAALKKEIAALKFEIAALKQ   30 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4566777777777777777777666654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=88.29  E-value=14  Score=35.76  Aligned_cols=38  Identities=13%  Similarity=0.103  Sum_probs=31.3

Q ss_pred             ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec
Q 016458          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (389)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  198 (389)
                      .+.++...++. .++++-+.|+++|+|++.+++++....
T Consensus       237 ~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTT-TEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCC-cEEEEEECCCEEEEEECCCCCeEeeec
Confidence            45666666654 689999999999999999999888764

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=87.31  E-value=1.6  Score=21.22  Aligned_cols=30  Identities=3%  Similarity=0.189  Sum_probs=22.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458            4 SVSELKERHAAAIETVNSLRERLKQKRQQL   33 (389)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   33 (389)
                      +|.||+.+.+++-.+...++.++...+.-+
T Consensus         1 RMnQLEdKVEell~~~~~le~EV~Rl~~ll   30 (33)
T 2wq1_A            1 RMKQLEDKIEENTSKIYHNTNEIARNTKLV   30 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            467888888888888888888877776543

>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A

Probab=87.08  E-value=1.4  Score=20.39  Aligned_cols=28  Identities=21%  Similarity=0.236  Sum_probs=23.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016458            4 SVSELKERHAAAIETVNSLRERLKQKRQ   31 (389)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~   31 (389)
                      .+.+|+++..+++.|.-+|+++..++.-
T Consensus         2 evaqlekevaqaeaenyqleqevaqleh   29 (33)
T 1fmh_A            2 EVAQLEKEVAQAEAENYQLEQEVAQLEH   29 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            4788999999999999999988877653

>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}

Probab=86.73  E-value=0.41  Score=25.47  Aligned_cols=28  Identities=21%  Similarity=0.306  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458            6 SELKERHAAAIETVNSLRERLKQKRQQL   33 (389)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~   33 (389)
                      -+++.+.+.+++.+..++.+++...+.+
T Consensus        12 sel~~r~e~LE~Ri~~LE~KLd~L~~~l   39 (43)
T 2pnv_A           12 SDLNERSEDFEKRIVTLETKLETLIGSI   39 (43)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3556667777777777777777766544

>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A

Probab=86.35  E-value=1.5  Score=19.99  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458            5 VSELKERHAAAIETVNSLRERLKQKR   30 (389)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~   30 (389)
                      -|.++++...++..++.++.++++..
T Consensus         3 wealekkcaalesklqalekkleale   28 (31)
T 3ljm_A            3 WEALEKKCAALESKLQALEKKLEALE   28 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47788899999999999998887763

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=86.29  E-value=3.2  Score=24.69  Aligned_cols=40  Identities=15%  Similarity=0.132  Sum_probs=32.3

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 016458            2 SSSVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGY   41 (389)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   41 (389)
                      |+.+|.|++++.++.+...+|+.+-.-+|.......+..+
T Consensus        14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~aspEql~q~   53 (78)
T 1dip_A           14 REEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKF   53 (78)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            6889999999999999999999988888776555544443

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=86.22  E-value=1.6  Score=21.63  Aligned_cols=30  Identities=13%  Similarity=0.139  Sum_probs=20.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458            4 SVSELKERHAAAIETVNSLRERLKQKRQQL   33 (389)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   33 (389)
                      +|.||+.+.+++..+...|+.+...++..+
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll   31 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEKEN   31 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            566777777777777777777666665543

>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}

Probab=84.81  E-value=1.7  Score=19.30  Aligned_cols=24  Identities=13%  Similarity=0.264  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 016458            6 SELKERHAAAIETVNSLRERLKQK   29 (389)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~   29 (389)
                      +.++-+.+.+++.+..+++++...
T Consensus         3 dalefendaleqkiaalkqkiasl   26 (28)
T 3ra3_A            3 DALEFENDALEQKIAALKQKIASL   26 (28)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHhccHHHHHHHHHHHHHHHHh
Confidence            345555555666666666655544

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=84.47  E-value=2.4  Score=20.78  Aligned_cols=31  Identities=6%  Similarity=0.247  Sum_probs=21.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458            3 SSVSELKERHAAAIETVNSLRERLKQKRQQL   33 (389)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   33 (389)
                      ++|.+|+.+.+.+-.+-..++.+....+.-+
T Consensus         1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk~lL   31 (34)
T 2bni_A            1 XRMKQIEDKLEEILSKGHHICNELARIKKLL   31 (34)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence            3677888888888777777777777766543

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=84.17  E-value=2.5  Score=20.73  Aligned_cols=30  Identities=7%  Similarity=0.310  Sum_probs=21.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458            4 SVSELKERHAAAIETVNSLRERLKQKRQQL   33 (389)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   33 (389)
                      +|.+|+++-+++-.+...|+++....+.-+
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~LL   31 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIKKLL   31 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            567788888888887888887777776543

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=84.17  E-value=15  Score=29.47  Aligned_cols=202  Identities=9%  Similarity=0.044  Sum_probs=110.1

Q ss_pred             cEEEEEEcCCCCeEEEEecCCcEEEE---eCCCCCeeEEEeeCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCC
Q 016458           69 KVYSLDWTSERNRIVSASQDGRLIVW---NALTSQKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDK  144 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~v~iw---~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~  144 (389)
                      .+..+.-......|+.-+.+|.++--   ++..+.... +-...+.|..+.... +..+++..+.+|.++-..+..-. .
T Consensus        25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~  102 (276)
T 3no0_A           25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-Y  102 (276)
T ss_dssp             CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-T
T ss_pred             eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-h
Confidence            56555555555567667777877643   332221111 222345566664421 46789999999999999876532 1


Q ss_pred             CCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee-------EEEecCcccCCCCCCeeEEEeeCC
Q 016458          145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-------TSVFGGEFQSGHTADVLSVSISGS  217 (389)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~  217 (389)
                      ...-.....+. ..+.+..+...... ..++..+..|.+..++...-..       ...+.    ......|..+...+ 
T Consensus       103 ~~~G~~~i~lk-egD~l~~~~~~~~~-~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~----L~~~d~vv~~~~~~-  175 (276)
T 3no0_A          103 KAQGMPIIKLT-EGDEVVSIASSVDE-THILLFTKKGRVARFSVREVPPSTPGARGVQGIK----LEKNDETSGLRIWN-  175 (276)
T ss_dssp             CSTTEECSCCC-TTCCEEEEEECCSS-CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC----CCTTCCEEEEEEES-
T ss_pred             hcCCeEEEecC-CCCEEEEEEEeCCC-CEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEc----cCCCCEEEEEEEeC-
Confidence            11111111122 23455555554443 5688888999988887532111       11110    12335666666655 


Q ss_pred             CCcEEEEeeCCCceEEEeCCCCC------cceeEEeeeccceEEEEEecCCCEEEEEecCCeEEE--EECC
Q 016458          218 NSRMFVSGSCDSTARLWDTRVAS------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL--FDIR  280 (389)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i--~d~~  280 (389)
                      ++..++..+..|.++...+....      +-+..+ ...+.+..+....+...++..+.+|.+..  ++..
T Consensus       176 ~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~  245 (276)
T 3no0_A          176 GEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK  245 (276)
T ss_dssp             SCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred             CCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence            45677888899998888764321      112222 22334444433333445666777777777  7654

>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}

Probab=83.91  E-value=3.4  Score=21.98  Aligned_cols=27  Identities=7%  Similarity=0.181  Sum_probs=20.7

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458            2 SSSVSELKERHAAAIETVNSLRERLKQ   28 (389)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~   28 (389)
                      +++-+++++|+..++.+++.+.+.+++
T Consensus        15 ~~r~e~LE~Ri~~LE~KLd~L~~~l~a   41 (43)
T 2pnv_A           15 NERSEDFEKRIVTLETKLETLIGSIHA   41 (43)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            466778888888888888888777654

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=83.75  E-value=2.6  Score=20.49  Aligned_cols=30  Identities=7%  Similarity=0.139  Sum_probs=20.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458            4 SVSELKERHAAAIETVNSLRERLKQKRQQL   33 (389)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   33 (389)
                      +|.+|+.+.+++-.+-..|+.+....+.-+
T Consensus         1 RMnQLEdKvEeLl~~~~~Le~EV~RLk~lL   30 (33)
T 3c3g_A            1 RMKXIEXKLXEIXSKXYHXENXLARIKXLL   30 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            466777777777777777777777666543

>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A

Probab=83.66  E-value=0.75  Score=23.63  Aligned_cols=32  Identities=16%  Similarity=0.232  Sum_probs=25.7

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458            2 SSSVSELKERHAAAIETVNSLRERLKQKRQQL   33 (389)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   33 (389)
                      .+.++.+++++..++.+.+.++++.......+
T Consensus         3 ~~~i~avKkKiq~lq~q~d~aee~~~~~~~~l   34 (37)
T 3azd_A            3 SSSLEAVRRKIRSLQEQNYHLENEVARLKKLV   34 (37)
T ss_dssp             ---CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35788999999999999999999998887665

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=83.62  E-value=2.1  Score=26.46  Aligned_cols=34  Identities=26%  Similarity=0.171  Sum_probs=21.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 016458            4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVD   37 (389)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   37 (389)
                      .+++|++.....+.++..|..++..+.+++....
T Consensus        29 tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~   62 (78)
T 3efg_A           29 ALTELSEALADARLTGARNAELIRHLLEDLGKVR   62 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4566777777777777777777777777665544

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=80.86  E-value=5.9  Score=35.78  Aligned_cols=60  Identities=17%  Similarity=0.219  Sum_probs=42.4

Q ss_pred             CeeEEEeCCCCCEEEEEecC------------CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458          299 HVTSIAFSISGRLLFAGYSN------------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  361 (389)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  361 (389)
                      ..-.|+|+|.|+++++-..+            +.+.+.+..+++....+.   ......++.++|+||++.|.+.
T Consensus       477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~---~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV---GPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE---CCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe---CCCCccCcCeeECCCCCEEEEE
Confidence            35679999999976664432            235666666777665553   3345789999999999988765

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=80.86  E-value=22  Score=29.23  Aligned_cols=244  Identities=7%  Similarity=0.016  Sum_probs=123.1

Q ss_pred             CCCCeEEEEecCCcEEEEeCCCC----CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC---CCCCCCCCc
Q 016458           77 SERNRIVSASQDGRLIVWNALTS----QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS---PTDKDGNLP  149 (389)
Q Consensus        77 ~~~~~l~~~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~---~~~~~~~~~  149 (389)
                      |+...+++.+.+|.|+--.+..-    .....+.. ...+..+........++..+..|.++-+....   ......-.+
T Consensus         3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~   81 (323)
T 1wp5_A            3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH   81 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred             cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence            56678889999999987654311    11111222 23455554545566677777788766555432   111111111


Q ss_pred             ceeeec-ccccceEEEEEeeC--CCcEEEEeeCCCeEEEEeCCCCee------EEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458          150 VSRMLS-GHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLR------TSVFGGEFQSGHTADVLSVSISGSNSR  220 (389)
Q Consensus       150 ~~~~~~-~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (389)
                      ....+. .....|..+...++  .+.+++.++.+|.++...+..-..      ...+.    ....+.+..+.... ...
T Consensus        82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~----l~e~d~lv~~~~~~-~~~  156 (323)
T 1wp5_A           82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGIN----LKNDDQVVDVHLTD-GMN  156 (323)
T ss_dssp             GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSC----CCTTCCEEEEEEEC-SCS
T ss_pred             hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEE----eCCCCEEEEEEEeC-CCC
Confidence            111111 12234555443332  235788999999999988742211      11111    12235565555554 445


Q ss_pred             EEEEeeCCCceEEEeCCCCC---c---ceeEEee-eccceEEEEEecCCC-EEEEEecCCeEEEEECCCC-------cee
Q 016458          221 MFVSGSCDSTARLWDTRVAS---R---AVRTFHG-HEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTG-------HQL  285 (389)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~---~---~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-------~~~  285 (389)
                      .++..+.+|.+..+....-.   .   -+..+.- ....|.++...+++. .+++.+..|..+..++..-       +-.
T Consensus       157 ~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv  236 (323)
T 1wp5_A          157 ELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGV  236 (323)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCE
T ss_pred             EEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCE
Confidence            67777888988888764321   1   1111111 223466665444444 7888888998888776541       111


Q ss_pred             eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (389)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (389)
                      ..+...  ......+..+....++..++..+.+|.+.-+++..
T Consensus       237 ~~~~~~--~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~  277 (323)
T 1wp5_A          237 VILREL--KANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD  277 (323)
T ss_dssp             ECSCCC--SSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred             ECeeec--CCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence            111110  01111244333223344555666777776666543

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=80.73  E-value=22  Score=29.08  Aligned_cols=194  Identities=10%  Similarity=0.037  Sum_probs=106.3

Q ss_pred             cEEEEeeCCCeEEEEeCCCCeeEEEec-C--cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc------
Q 016458          172 THLITSSGDQTCVLWDITTGLRTSVFG-G--EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA------  242 (389)
Q Consensus       172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------  242 (389)
                      .++++.+.+|.|+-..+..-.....-. .  .......+.+..+.... ....++..+..|.++-+....-...      
T Consensus         9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G   87 (312)
T 1suu_A            9 NIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRASKG   87 (312)
T ss_dssp             EEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC-------
T ss_pred             CEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCccCCC
Confidence            578889999999988765432111000 0  00012334455554444 4455666778888777655322110      


Q ss_pred             -----eeEEeeeccceEEEEEec---CCCEEEEEecCCeEEEEECCCCcee-----eEeeccCCCCCCCCeeEEEeCCCC
Q 016458          243 -----VRTFHGHEGDVNTVKFFP---DGNRFGTGSDDGTCRLFDIRTGHQL-----QVYYQQHGENEIPHVTSIAFSISG  309 (389)
Q Consensus       243 -----~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~  309 (389)
                           ...+. ....|.++...+   +..+|+..+..|.++...+......     ..+..    .....+..+......
T Consensus        88 ~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L----~~~d~lv~~~~~~~~  162 (312)
T 1suu_A           88 QNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKL----NDKDFVTSAEIVFKD  162 (312)
T ss_dssp             CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCC----CTTCCEEEEEEECTT
T ss_pred             cChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEec----CCCCEEEEEEEeCCC
Confidence                 11112 123344443332   4677888999999998887543211     11111    112235555555555


Q ss_pred             CEEEEEecCCcEEEEEcccce-------EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          310 RLLFAGYSNGDCYVWDTLLAK-------VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       310 ~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      ..++..+.+|.+..+....-.       -...+.   -.....|.++....++..+++.+..|..+.    .++.+
T Consensus       163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~---L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr----~~~~e  231 (312)
T 1suu_A          163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMK---LKEGDLFVKVLSVKENPYLLIVSENGYGKR----LNMSK  231 (312)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCC---CCTTCCEEEEEECTTCSEEEEEETTSEEEE----EEGGG
T ss_pred             CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEE---eCCCCEEEEEEEECCCCeEEEEECCCceEE----EEHHH
Confidence            678888899999888875311       111111   122455666666555667888888888877    55543

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=80.06  E-value=1.8  Score=27.42  Aligned_cols=33  Identities=21%  Similarity=0.242  Sum_probs=24.9

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016458            3 SSVSELKERHAAAIETVNSLRERLKQKRQQLLD   35 (389)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   35 (389)
                      .++++|+++...++.++++|+.++..++..+..
T Consensus        43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~   75 (87)
T 1hjb_A           43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQ   75 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778888888888888888888877766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	389
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-43
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-31
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-25
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-25
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-22
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-17
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-18
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-17
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-17
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-12
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-15
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-15
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-14
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-13
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.004
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-13
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-11
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-12
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-12
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-12
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-12
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-11
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-09
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	8e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.001
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	5e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	9e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	9e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  151 bits (380), Expect = 6e-43
 Identities = 127/354 (35%), Positives = 186/354 (52%), Gaps = 22/354 (6%)

Query: 19  VNSLRERLKQKRQQLLDVDVAGYS---RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDW 75
           ++ LR+  +Q + Q+ D   A                G   +   RTL+GH  K+Y++ W
Sbjct: 4   LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 63

Query: 76  TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135
            ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI
Sbjct: 64  GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123

Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
           +NL +              +G+              +   T+           T      
Sbjct: 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT------ 177

Query: 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255
                         +       ++R+FVSG+CD++A+LWD R      +TF GHE D+N 
Sbjct: 178 -----TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINA 231

Query: 256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315
           + FFP+GN F TGSDD TCRLFD+R   +L  Y   +       +TS++FS SGRLL AG
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC---GITSVSFSKSGRLLLAG 288

Query: 316 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
           Y + +C VWD L A     L      H+ R++CLG++ DG A+ TGSWD+ LK+
Sbjct: 289 YDDFNCNVWDALKADRAGVL----AGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.2 bits (204), Expect = 2e-18
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 13/168 (7%)

Query: 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE 170
            VM+ + +P  +    G  D+   ++++             +  +GH+  ++   + P+ 
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGM-------CRQTFTGHESDINAICFFPNG 238

Query: 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230
           +    T S D TC L+D+                    + SVS S  + R+ ++G  D  
Sbjct: 239 N-AFATGSDDATCRLFDLR---ADQELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFN 293

Query: 231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278
             +WD   A R      GH+  V+ +    DG    TGS D   ++++
Sbjct: 294 CNVWDALKADR-AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.0 bits (141), Expect = 2e-10
 Identities = 47/229 (20%), Positives = 82/229 (35%), Gaps = 16/229 (6%)

Query: 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT 206
            +   R L GH   +    +  D    L+++S D   ++WD  T  +            +
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAI-----PLRS 97

Query: 207 ADVLSVSISGSNSRMFVSGSCDSTAR-LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 265
           + V++ + + S + +   G  +  +     TR  +  V           +   F D N+ 
Sbjct: 98  SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 157

Query: 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325
            T S D TC L+DI TG Q   +           V S++ +   RL  +G  +    +WD
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHT-----GDVMSLSLAPDTRLFVSGACDASAKLWD 212

Query: 326 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFW 374
                           HE  I  +    +G+A  TGS D   ++     
Sbjct: 213 VREGMCRQTF----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 15/79 (18%), Positives = 30/79 (37%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
              +       + S+ ++     +++   D    VW+AL + +   +      V     +
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321

Query: 119 PTGQSVACGGLDSVCSIFN 137
             G +VA G  DS   I+N
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  119 bits (299), Expect = 1e-31
 Identities = 71/329 (21%), Positives = 120/329 (36%), Gaps = 44/329 (13%)

Query: 61  RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
             L GH   V  + +    + +VSAS+D  + VW+  T      +K     V   +F  +
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
           G+ +A    D    +++              R + GH   VS    +P+   H++++S D
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECI-------RTMHGHDHNVSSVSIMPN-GDHIVSASRD 122

Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240
           +T  +W++ TG     F     +GH   V  V  +  +  +  S S D T R+W      
Sbjct: 123 KTIKMWEVQTGYCVKTF-----TGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVA-TK 175

Query: 241 RAVRTFHGHEGDVNTVKF--------------------FPDGNRFGTGSDDGTCRLFDIR 280
                   H   V  + +                       G    +GS D T +++D+ 
Sbjct: 176 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 235

Query: 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 340
           TG  L              V  + F   G+ + +   +    VWD    + +  L    N
Sbjct: 236 TGMCLMTLVGHDNW-----VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL----N 286

Query: 341 SHEGRITCLGLSADGSALCTGSWDTNLKV 369
           +HE  +T L        + TGS D  +KV
Sbjct: 287 AHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (257), Expect = 1e-25
 Identities = 55/281 (19%), Positives = 99/281 (35%), Gaps = 28/281 (9%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
             RTL+GH   V  + +      + S S D  + +W+    +    +      V + +  
Sbjct: 51  FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM 110

Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
           P G  +     D    ++ + +           +  +GH+ +V   +   D  T + + S
Sbjct: 111 PNGDHIVSASRDKTIKMWEVQTGYCV-------KTFTGHREWVRMVRPNQD-GTLIASCS 162

Query: 179 GDQTCVLWDITTGLRTSVFGG--------------EFQSGHTADVLSVSISGSNSRMFVS 224
            DQT  +W + T    +                   + S   A       SG      +S
Sbjct: 163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222

Query: 225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284
           GS D T ++WD       + T  GH+  V  V F   G    + +DD T R++D +    
Sbjct: 223 GSRDKTIKMWDVS-TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 281

Query: 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325
           ++             VTS+ F  +   +  G  +    VW+
Sbjct: 282 MKTLNAHEHF-----VTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (158), Expect = 1e-12
 Identities = 43/218 (19%), Positives = 85/218 (38%), Gaps = 17/218 (7%)

Query: 149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 208
           P    LSGH+  V+   + P     ++++S D T  +WD  TG            GHT  
Sbjct: 8   PEKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTL-----KGHTDS 61

Query: 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268
           V  +S   S   +    +  +             +RT HGH+ +V++V   P+G+   + 
Sbjct: 62  VQDISFDHSGKLLASCSADMTIKLWDFQGF--ECIRTMHGHDHNVSSVSIMPNGDHIVSA 119

Query: 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328
           S D T ++++++TG+ ++ +           V  +  +  G L+ +  ++    VW    
Sbjct: 120 SRDKTIKMWEVQTGYCVKTFTGHRE-----WVRMVRPNQDGTLIASCSNDQTVRVWVVAT 174

Query: 329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366
            +    L      H   + C+  + + S         +
Sbjct: 175 KECKAEL----REHRHVVECISWAPESSYSSISEATGS 208

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 232 RLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288
           + W  R          GH   V  V F P  +   + S+D T +++D  TG   +  
Sbjct: 1   KEWIPR--PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL 55

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (257), Expect = 3e-25
 Identities = 58/358 (16%), Positives = 121/358 (33%), Gaps = 60/358 (16%)

Query: 58  VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA------- 110
           V       H   V  + ++++   + +   +    V+          +    A       
Sbjct: 53  VELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPEN 111

Query: 111 -----------WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159
                      ++ +  FSP G+ +A G  D +  I+++ +            M+     
Sbjct: 112 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV--------MILQGHE 163

Query: 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219
                         L++ SGD+T  +WD+ TG  +              V +V++S  + 
Sbjct: 164 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS------LTLSIEDGVTTVAVSPGDG 217

Query: 220 RMFVSGSCDSTARLWDTR------VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 273
           +   +GS D   R+WD+              +  GH+  V +V F  DG    +GS D +
Sbjct: 218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 277

Query: 274 CRLFDIRTGHQLQVYYQQHGENEI-------PHVTSIAFSISGRLLFAGYSNGDCYVWDT 326
            +L++++  +        +              V S+A + +   + +G  +     WD 
Sbjct: 278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 337

Query: 327 LLAKVVLNLGSLQNSHEGRITCLG------LSADGSALCTGSWDTNLKVNLGFWRVQE 378
                +L L      H   +  +       L  + +   TGS D   ++    W+ ++
Sbjct: 338 KSGNPLLML----QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI----WKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (116), Expect = 4e-07
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 52  FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK----- 106
             P    C  T  GH   V S+  T     I+S S+D  ++ W+  +      ++     
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 352

Query: 107 -LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138
            +  A     +  P     A G  D    I+  
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 5e-07
 Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 17/132 (12%)

Query: 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDGNRF 265
              + +   +    +    +    L++  +        H    H   V  VKF  DG   
Sbjct: 18  PFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYL 77

Query: 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP-------------HVTSIAFSISGRLL 312
            TG +  T +++ +  G  +         N+ P             ++ S+ FS  G+ L
Sbjct: 78  ATGCNK-TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136

Query: 313 FAGYSNGDCYVW 324
             G  +    +W
Sbjct: 137 ATGAEDRLIRIW 148

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.0 bits (229), Expect = 9e-22
 Identities = 68/348 (19%), Positives = 121/348 (34%), Gaps = 45/348 (12%)

Query: 56  DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115
           +L   + L+GH   V +       NRIVS S D  L VW+A+T +    +      V + 
Sbjct: 5   ELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 63

Query: 116 AFSPTGQ----------------------------SVACGGLDSVCSIFNLNSPTDKDGN 147
                                              +V C  L     +      T +  +
Sbjct: 64  QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWD 123

Query: 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207
           +   + L    G+V+  + V  +   +++ + D    +WD  T             GHT 
Sbjct: 124 IETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL-----QGHTN 178

Query: 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT 267
            V S+   G      VSGS D++ R+WD       + T  GH+   + ++     N   +
Sbjct: 179 RVYSLQFDG---IHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTSGMEL--KDNILVS 232

Query: 268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327
           G+ D T +++DI+TG  LQ     +               +   +     +G   +WD  
Sbjct: 233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC----LQFNKNFVITSSDDGTVKLWDLK 288

Query: 328 LAKVVLNLGSLQNS-HEGRITCLGLSADGSALCTGSWDTNLKVNLGFW 374
             + + NL +L++    G +  +  S        GS +   +  L   
Sbjct: 289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (198), Expect = 1e-17
 Identities = 54/297 (18%), Positives = 92/297 (30%), Gaps = 38/297 (12%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA-- 116
           C RTL GH G V+S           S  +  ++          T          M     
Sbjct: 49  CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK 108

Query: 117 ------------------------FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR 152
                                         +V C   D    +        K  +     
Sbjct: 109 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET 168

Query: 153 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212
            L   +G+ +    +  +  H+++ S D +  +WD+ TG           +GH +    +
Sbjct: 169 CLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL-----TGHQSLTSGM 223

Query: 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 272
            +      + VSG+ DST ++WD +           ++          + N   T SDDG
Sbjct: 224 ELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG 280

Query: 273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD----CYVWD 325
           T +L+D++TG  ++             V  I  S +  +   G  NG       V D
Sbjct: 281 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 6e-09
 Identities = 45/226 (19%), Positives = 70/226 (30%), Gaps = 26/226 (11%)

Query: 144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS 203
           + G L   ++L GH  +V  C  +      +++ S D T  +W   TG            
Sbjct: 2   RRGELKSPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-----V 54

Query: 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 263
           GHT  V S  +  +      +              A         +              
Sbjct: 55  GHTGGVWSSQMRDNIIISGSTDRT------LKVWNAETGECIHTLYGHTSTVRCMHLHEK 108

Query: 264 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 323
           R  +GS D T R++DI TG  L V                      R + +G  +    V
Sbjct: 109 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG-------RRVVSGAYDFMVKV 161

Query: 324 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
           WD      +  L               L  DG  + +GS DT+++V
Sbjct: 162 WDPETETCLHTL------QGHTNRVYSLQFDGIHVVSGSLDTSIRV 201

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.7 bits (205), Expect = 1e-18
 Identities = 40/327 (12%), Positives = 83/327 (25%), Gaps = 29/327 (8%)

Query: 61  RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC---AWVMTCAF 117
           +  Q     +  +     ++ ++  S DG L V+      K   +         ++ C F
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 118 SP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176
              T   +  G +       +L               L   +        +         
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD--- 121

Query: 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD- 235
                   + D        +      S +T     +    +NS   + G  +S  + +  
Sbjct: 122 ----GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRL 177

Query: 236 --TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV------ 287
                 +  +          +      +   +   S DG   +                 
Sbjct: 178 PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237

Query: 288 ----YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE 343
                      N    V SI FS   + L+   S+G    W+    K + N      +  
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF-----AKF 292

Query: 344 GRITCLGLSADGSALCTGSWDTNLKVN 370
              + + ++   + LC  + D   K N
Sbjct: 293 NEDSVVKIACSDNILCLATSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (137), Expect = 8e-10
 Identities = 9/82 (10%), Positives = 23/82 (28%), Gaps = 2/82 (2%)

Query: 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS 302
           V+     +  ++ +K  P  +     S DG+  ++      +     Q         +  
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH--PLLC 61

Query: 303 IAFSISGRLLFAGYSNGDCYVW 324
             F  +  L     +     + 
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILK 83

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (197), Expect = 1e-17
 Identities = 41/321 (12%), Positives = 88/321 (27%), Gaps = 32/321 (9%)

Query: 54  PTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC---- 109
           P       TL  H   V ++  ++    + +    G + VW+         +        
Sbjct: 39  PRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNR 96

Query: 110 -AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP 168
             ++ +C   P G ++  GG  S  SI++L +PT +      S   + +   +S    V 
Sbjct: 97  DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC 156

Query: 169 DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228
                    +                                  S    ++      +  
Sbjct: 157 FSCCSDGNIAVWDLHNQT--------------LVRQFQGHTDGASCIDISNDGTKLWTGG 202

Query: 229 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288
               +    +        H     + ++ + P G     G +     +  +    + Q++
Sbjct: 203 LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH 262

Query: 289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 348
             +        V S+ F+  G+   +   +     W T     +             +  
Sbjct: 263 LHES------CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-----ESSSVLS 311

Query: 349 LGLSADGSALCTGSWDTNLKV 369
             +S D   + TGS D    V
Sbjct: 312 CDISVDDKYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 2e-10
 Identities = 30/251 (11%), Positives = 62/251 (24%), Gaps = 32/251 (12%)

Query: 58  VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF 117
           V           + S     +   ++   +   L +W+          +L  +     A 
Sbjct: 88  VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147

Query: 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP-----DEDT 172
           + +  S  C    S  +I   +                     +S           D   
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 207

Query: 173 HLITSSGDQTCVLWDITTGLRTSVF------------------------GGEFQSGHTAD 208
                   +     D T+ + +  +                               H + 
Sbjct: 208 RSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC 267

Query: 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268
           VLS+  +    + FVS   D+    W T   +   ++       V +     D     TG
Sbjct: 268 VLSLKFA-YCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTG 324

Query: 269 SDDGTCRLFDI 279
           S D    ++++
Sbjct: 325 SGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 2e-10
 Identities = 21/116 (18%), Positives = 32/116 (27%), Gaps = 3/116 (2%)

Query: 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268
             S  ++       V    D+       R  +R + T   H   V  V          TG
Sbjct: 12  AYSFHVTADGQMQPVPFPPDALIGPGIPR-HARQINTL-NHGEVVCAVTISNPTRHVYTG 69

Query: 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324
              G  +++DI          Q    N   ++ S      G  L  G       +W
Sbjct: 70  GK-GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 3e-06
 Identities = 31/262 (11%), Positives = 56/262 (21%), Gaps = 47/262 (17%)

Query: 156 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215
            H   V          T  + + G     +WDI+     S             + S  + 
Sbjct: 49  NHGEVVCAVTISNP--TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106

Query: 216 GSNSRMFVSGSC------------------DSTARLWDTRVASRAVRTFHGHEGDVNTVK 257
                + V G                     +++      +A                + 
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166

Query: 258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH------------------ 299
            +   N+       G                    G +                      
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ 226

Query: 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC 359
           + S+ +  +G  L  G  + +  V       V        + HE  +  L  +  G    
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLH-----VNKPDKYQLHLHESCVLSLKFAYCGKWFV 281

Query: 360 TGSWDTNLKVNLGFWRVQEGAL 381
           +   D  L      WR   GA 
Sbjct: 282 STGKDNLLNA----WRTPYGAS 299

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (192), Expect = 5e-17
 Identities = 61/314 (19%), Positives = 117/314 (37%), Gaps = 36/314 (11%)

Query: 61  RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
                 +  VY L +     +IVS  +D  + +W+  T +    +      V+   +   
Sbjct: 9   HCRSETSKGVYCLQYDD--QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--- 63

Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
                    D    I   +  T +  ++    ML+    +     ++   +  ++T S D
Sbjct: 64  ---------DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKD 114

Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240
           ++  +WD+ +   T +       GH A   +V++   + +  VS S D T ++W+T    
Sbjct: 115 RSIAVWDMAS--PTDITLRRVLVGHRA---AVNVVDFDDKYIVSASGDRTIKVWNTS-TC 168

Query: 241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300
             VRT +GH+  +  +++        +GS D T RL+DI  G  L+V             
Sbjct: 169 EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 226

Query: 301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ-----NSHEGRITCLGLSADG 355
            +       + + +G  +G   VWD + A                 H GR+    L  D 
Sbjct: 227 DN-------KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR--LQFDE 277

Query: 356 SALCTGSWDTNLKV 369
             + + S D  + +
Sbjct: 278 FQIVSSSHDDTILI 291

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (157), Expect = 2e-12
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 19/165 (11%)

Query: 75  WTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCS 134
              +   IVSAS D  + VWN  T +    +      +    +    + V  G  D+   
Sbjct: 144 VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIR 201

Query: 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194
           ++++               L   +G+    + +  ++  +++ + D    +WD+   L  
Sbjct: 202 LWDIECG----------ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDP 251

Query: 195 SVFGGEFQ----SGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 235
               G         H+  V  +          VS S D T  +WD
Sbjct: 252 RAPAGTLCLRTLVEHSGRVFRLQFDE---FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 2e-10
 Identities = 53/271 (19%), Positives = 97/271 (35%), Gaps = 28/271 (10%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
           C R L GH G V  L +    +  V  +      V     +       L           
Sbjct: 47  CKRILTGHTGSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR 102

Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
                +     D   +++++ SPTD        R+L GH+  V+   +   +D +++++S
Sbjct: 103 FNNGMMVTCSKDRSIAVWDMASPTDITLR----RVLVGHRAAVNVVDF---DDKYIVSAS 155

Query: 179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
           GD+T  +W+ +T        G  +         ++      R+ VSGS D+T RLWD   
Sbjct: 156 GDRTIKVWNTSTCEFVRTLNGHKR--------GIACLQYRDRLVVSGSSDNTIRLWDIE- 206

Query: 239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298
               +R   GH  +        D  R  +G+ DG  +++D+      +          + 
Sbjct: 207 CGACLRVLEGH--EELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 264

Query: 299 H----VTSIAFSISGRLLFAGYSNGDCYVWD 325
                V  + F      + +   +    +WD
Sbjct: 265 EHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 54  PTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN 95
           P   +C RTL  H+G+V+ L +     +IVS+S D  +++W+
Sbjct: 254 PAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 243 VRTFHGHEGDVNTVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288
           ++  H        V     D  +  +G  D T +++D  T    ++ 
Sbjct: 5   LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRIL 51

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.3 bits (183), Expect = 1e-15
 Identities = 46/348 (13%), Positives = 91/348 (26%), Gaps = 49/348 (14%)

Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-------------P 108
             + H   ++S+   +  +  VS S DG L VW+       +                  
Sbjct: 9   AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML---SGHKGYVSCCQ 165
                    +     VA          + +    +    +     L      K      +
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

Query: 166 YVPDEDT----HLITSSGDQTCVLWDITTGLRTSV-----------FGGEFQSGHTADVL 210
           +    D      L+ +    T  +W        S              G  +S  T    
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186

Query: 211 SVSISGSNSRMFVSGSCDSTARL-----WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 265
           + S+  S   +  +G  + T ++             +  +   +   + +VKF P G+  
Sbjct: 187 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246

Query: 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP-----------HVTSIAFSISGRLLFA 314
               D  +     +      +                        V S++F+ SG  L +
Sbjct: 247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 306

Query: 315 GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362
              +G    WD    + +  L    +  E     L +   G +L    
Sbjct: 307 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.4 bits (160), Expect = 1e-12
 Identities = 29/259 (11%), Positives = 63/259 (24%), Gaps = 40/259 (15%)

Query: 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-------LRTSVFGGE 200
           +  +     H   +             ++ SGD    +WD              S F  +
Sbjct: 4   IATANAGKAHDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK 60

Query: 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR---------VASRAVRTFHGHEG 251
               H   + ++        +  + S       +                 +      + 
Sbjct: 61  SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH 120

Query: 252 DVNTVKFFPDGN-----RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP-------- 298
               +K+    +     R       GT  ++              +    +         
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180

Query: 299 -----HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--NSHEGRITCLGL 351
                  TS+  S  G L+  G++NG   + +    + + N  S     ++   I  +  
Sbjct: 181 MTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239

Query: 352 SADGSALCTGSWDTNLKVN 370
           S  GS L       +    
Sbjct: 240 SPQGSLLAIAHDSNSFGCI 258

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 8e-11
 Identities = 32/207 (15%), Positives = 60/207 (28%), Gaps = 40/207 (19%)

Query: 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-----RAVRTFHGHEGDVNTVKF 258
            H AD+ SVS         VS S D   ++WD ++           +   H+  ++ V  
Sbjct: 12  AHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 259 F-------PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH-----VTSIAFS 306
                    +     T S  G    + I    + +    +  +            ++ + 
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128

Query: 307 ISG-----RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS--------------HEGRIT 347
            S        L A    G  Y+W         N  +L  S                   T
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 188

Query: 348 CLGLSADGSALCTGSWDTNLKVNLGFW 374
            + +S  G  + TG  +  ++++    
Sbjct: 189 SVDISERGL-IATGFNNGTVQISELST 214

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (138), Expect = 7e-10
 Identities = 38/359 (10%), Positives = 90/359 (25%), Gaps = 55/359 (15%)

Query: 41  YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTS--ERNRIVSASQDGRLIVWNALT 98
           +             +          H   V         E   + + S  G L+ +    
Sbjct: 39  WDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR 98

Query: 99  SQKTHAIKLPCAWVMTCAFSPTG---------------QSVACGGLDSVCSIFNLNSPTD 143
             +T  +      ++                         +    +     I+  +   D
Sbjct: 99  EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 158

Query: 144 KDGNLPVS-----------RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 192
           +  +L ++                   + +           + T   + T  + +++T  
Sbjct: 159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--GLIATGFNNGTVQISELSTLR 216

Query: 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA---RLWDTRV----------- 238
               F  +    + ++ +          +       ++     L++T             
Sbjct: 217 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 276

Query: 239 -ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297
            +S+A      H   V ++ F   G    +   DG  R +D++T  ++      H ++  
Sbjct: 277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT-LNMHCDDIE 335

Query: 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 356
                +A    G  L          V+D    K     G   + +E          D S
Sbjct: 336 IEEDILAVDEHGDSLAEP------GVFDVKFLKKGWRSGMGADLNESLCCV---CLDRS 385

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 73.0 bits (177), Expect = 7e-15
 Identities = 19/230 (8%), Positives = 56/230 (24%), Gaps = 10/230 (4%)

Query: 60  CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP 119
                      +       ++          + V++    +   A     +     AF  
Sbjct: 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-ENSHDYAPAFDA 188

Query: 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 179
             +++      S+    +          +    ++    G  +  + VP   T    +  
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMT--SEAGE 246

Query: 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS--ISGSNSRMFVSGSCDSTARLWDTR 237
                ++  ++ +              + +L  S  + G  +  +           +D  
Sbjct: 247 YDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV- 305

Query: 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 287
                 R     + ++  ++   D        DDG    F +      + 
Sbjct: 306 ----KTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 71.8 bits (174), Expect = 1e-14
 Identities = 32/327 (9%), Positives = 67/327 (20%), Gaps = 30/327 (9%)

Query: 65  GHAGKVYSLDWTSERNRIVSASQD-GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
               ++  +    +           G  +      + K    +     V        G+ 
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH--LITSSGDQ 181
                        +L +            M++      +                    Q
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159

Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
              ++D+      +           A         ++S+     S  S     D  V + 
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFD-------ADSKNLYYLSYRSLDPSPDRVVLNF 212

Query: 242 A------VRTFHGHEGDVNTVKFFPDGNRFGTGSD--DGTCRLFDIRTGHQLQVYYQQHG 293
           +              G  N  K  P       G    +   +                  
Sbjct: 213 SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPL 272

Query: 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353
           E+ I   +                 G    +D    KV           +  +T L LSA
Sbjct: 273 ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT--------EVKNNLTDLRLSA 324

Query: 354 DGSALCTGSWDTNLKVNLGFWRVQEGA 380
           D   +     D  +      + +++  
Sbjct: 325 DRKTVMVRKDDGKIYT----FPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 68.0 bits (164), Expect = 3e-13
 Identities = 21/275 (7%), Positives = 66/275 (24%), Gaps = 17/275 (6%)

Query: 60  CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP 119
               + + G V+++         V A+    ++  +  T + T   +   A +     S 
Sbjct: 78  AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD 137

Query: 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSS 178
             + +A G                   ++   ++ +               +  +L   S
Sbjct: 138 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLS 197

Query: 179 GDQTCVLWDITTGLRTSVFGGEFQS--GHTADVLSVSISGSNS-----RMFVSGSCDSTA 231
                   D      +     +               +   +         ++     ++
Sbjct: 198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSS 257

Query: 232 RLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ 291
            +       R +          +          +    + G    +D++T         +
Sbjct: 258 PINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-----TE 312

Query: 292 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326
                  ++T +  S   + +     +G  Y +  
Sbjct: 313 VKN----NLTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.7 bits (166), Expect = 2e-13
 Identities = 56/333 (16%), Positives = 86/333 (25%), Gaps = 36/333 (10%)

Query: 56  DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAWVM 113
             V    L+ H G+V  +DW  + NRIV+   D    VW       + T  I        
Sbjct: 40  KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99

Query: 114 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 173
              ++P  +  A G    V SI       D        + +                   
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC----KHIKKPIRSTVLSLDWHPNSVL 155

Query: 174 LITSSGDQTCVLWDITTGLRTSVFGGEFQ-------------SGHTADVLSVSISGSNSR 220
           L   S D  C ++                             S     V  V  S + SR
Sbjct: 156 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR 215

Query: 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280
           +       ST  L D      AV T       +  V F  + +    G D          
Sbjct: 216 VAWVSHD-STVCLADADK-KMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 273

Query: 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 340
              +L    +     +       A      L     S G                  L +
Sbjct: 274 AAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS-----------AAAGAGLDS 322

Query: 341 SHEGRITCLGLSADG----SALCTGSWDTNLKV 369
            H+  ++ + + + G    S  CT   D  + +
Sbjct: 323 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSI 355

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.0 bits (146), Expect = 6e-11
 Identities = 34/237 (14%), Positives = 72/237 (30%), Gaps = 21/237 (8%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
           C    +     V SLDW      + + S D +  +++A   +                  
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 192

Query: 119 PTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE----- 170
              +S +  G        +  +  +    D  + ++             + +P       
Sbjct: 193 LMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI 252

Query: 171 -DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 229
            ++ L+ +  D   VL+   +        G+   G   DV   S     +      + D 
Sbjct: 253 TESSLVAAGHDCFPVLFTYDSA------AGKLSFGGRLDVPKQSSQRGLTARERFQNLDK 306

Query: 230 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN----RFGTGSDDGTCRLFDIRTG 282
            A    +  A   + +   H+  V+ +     G     +F T   DG   ++D+R+ 
Sbjct: 307 KASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.3 bits (144), Expect = 1e-10
 Identities = 19/170 (11%), Positives = 42/170 (24%), Gaps = 5/170 (2%)

Query: 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHGHEGDVNTVKFF 259
           + S     +   + +  +         +    +++        V     H G V  V + 
Sbjct: 2   YHSFLVEPISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319
           PD NR  T   D    ++ ++                   V         +    G  + 
Sbjct: 61  PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE---KKFAVGSGSR 117

Query: 320 DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
              +              ++      +  L    +   L  GS D   ++
Sbjct: 118 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 167

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.3 bits (139), Expect = 4e-10
 Identities = 29/228 (12%), Positives = 66/228 (28%), Gaps = 7/228 (3%)

Query: 161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220
           +SC  +  D  T +     +    +++ +      V   +    H   V  V  +  +S 
Sbjct: 10  ISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELK---EHNGQVTGVDWA-PDSN 64

Query: 221 MFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279
             V+   D  A +W  +  + +              V++ P+  +F  GS      +   
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 339
                     +   +     V S+ +  +  LL AG  +  C ++   + +V        
Sbjct: 125 EQ-ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 183

Query: 340 NSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPWGVK 387
              +     L   +  S         +   +   W   +  +      
Sbjct: 184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.0 bits (133), Expect = 3e-09
 Identities = 27/210 (12%), Positives = 53/210 (25%), Gaps = 20/210 (9%)

Query: 32  QLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRL 91
           ++    +          P                  G V+ + +++  +R+   S D  +
Sbjct: 166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 225

Query: 92  IVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS 151
            + +A        +      ++   F      VA G       +F  +S   K       
Sbjct: 226 CLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPV-LFTYDSAAGK------- 277

Query: 152 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE-FQSGHTADVL 210
               G               +     +  +     D       S   G    S H   V 
Sbjct: 278 LSFGGRLDVPK--------QSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVS 329

Query: 211 SVSIS---GSNSRMFVSGSCDSTARLWDTR 237
            +S+     +    F +   D    +WD R
Sbjct: 330 QISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 67.7 bits (163), Expect = 3e-13
 Identities = 29/296 (9%), Positives = 75/296 (25%), Gaps = 32/296 (10%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI-KLPCAWVMTCAF 117
             +   GH   + +L  +++   + SA  +G +  W+  T         +    +     
Sbjct: 4   IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

Query: 118 SPTGQSVACGGLDSVCSIFNLNSPTD------------------KDGNLPVSRMLSGHKG 159
           +  G        D +  +    S  D                               H  
Sbjct: 64  TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123

Query: 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219
             S  +      ++  +         +    G  + V   +      ++V ++      +
Sbjct: 124 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT 183

Query: 220 ----------RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 269
                      +    S                  ++  H   V  V + PD  R  TGS
Sbjct: 184 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 243

Query: 270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325
            D +  ++++       +  +           +    ++   + +   + +   W+
Sbjct: 244 LDNSVIVWNMNKPSDHPIIIKGAHAM---SSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.1 bits (138), Expect = 3e-10
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS 302
            +  +GH   +  +    DG    +   +G    +DI TG   +V+   H       +T 
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT----MITG 60

Query: 303 IAFSISGRLLFAGYSNGDCYVWDT 326
           I  +  G L    + +    V   
Sbjct: 61  IKTTSKGDLFTVSWDDHLKVVPAG 84

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (90), Expect = 4e-04
 Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV 167
             A V   ++SP    +A G LD+   ++N+N P+D     P+    +     V+   ++
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH----PIIIKGAHAMSSVNSVIWL 278

Query: 168 PDEDTHLITSSGDQTCVLWDIT 189
            +  T ++++  D     W++ 
Sbjct: 279 NE--TTIVSAGQDSNIKFWNVP 298

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.2 bits (162), Expect = 5e-13
 Identities = 48/359 (13%), Positives = 101/359 (28%), Gaps = 63/359 (17%)

Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL+GH   V +     E N +++ + D  + V++++  +    +      V    ++  G
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             V+     +V                        +               +++T S D 
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTH-------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118

Query: 182 TCVLWDITTGLRTSVFGGEFQ---------------SGHTADVLSVSISGSNSRMFVSGS 226
           T  +W +         G E                       + SV     +  + VSGS
Sbjct: 119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 178

Query: 227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286
            D+T  +WD     + +    GH   + +  +  +  R  + S D T R++D+  G  + 
Sbjct: 179 YDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 237

Query: 287 VYYQQHGENEIPH----------------------------------VTSIAFSISGRLL 312
                     +                                         F +S  +L
Sbjct: 238 TLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNIL 297

Query: 313 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNL 371
            +G S     +++    K+V    +       +I  +        +     D    + +
Sbjct: 298 VSG-SENQFNIYNLRSGKLV---HANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (137), Expect = 7e-10
 Identities = 36/313 (11%), Positives = 86/313 (27%), Gaps = 52/313 (16%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC--AWVMTCA 116
               L GH G V++L + +    +VS S D  + VW+      TH  +        +   
Sbjct: 45  FLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 103

Query: 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176
                + +  G  D+   ++ L   +    +                  +V     H+ +
Sbjct: 104 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 163

Query: 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236
                      ++     ++   +        +LS       S ++        +   DT
Sbjct: 164 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 223

Query: 237 RV--------------------------------------------ASRAVRTFHGHEGD 252
            +                                            A+   R F  H  +
Sbjct: 224 TIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN 283

Query: 253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312
           ++ +  F   +       +    ++++R+G  +     +  +     + S+ F     L+
Sbjct: 284 LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD----QIWSVNFK-GKTLV 338

Query: 313 FAGYSNGDCYVWD 325
            A   +G  ++  
Sbjct: 339 AAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 8/151 (5%)

Query: 149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 208
           P    L GH   V  C  +  ED ++IT + D+   ++D               SGH   
Sbjct: 3   PQRTTLRGHMTSVITC--LQFEDNYVITGADDKMIRVYDSINKKFLLQL-----SGHDGG 55

Query: 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268
           V ++  +     +    +  +       +     V   H        +  + +     TG
Sbjct: 56  VWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG 114

Query: 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
           S D T  ++ +     +  + ++H    + H
Sbjct: 115 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 145

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 9/81 (11%), Positives = 21/81 (25%), Gaps = 8/81 (9%)

Query: 108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV 167
               +          ++   G ++  +I+NL S         V   +      +    + 
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGK------LVHANILKDADQIWSVNFK 333

Query: 168 PDEDTHLITSSGDQTCVLWDI 188
               T +     D    L  +
Sbjct: 334 GK--TLVAAVEKDGQSFLEIL 352

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 67.1 bits (162), Expect = 6e-13
 Identities = 31/319 (9%), Positives = 75/319 (23%), Gaps = 42/319 (13%)

Query: 79  RNRIVSASQDGRLIVWNALTSQKTHAIKLP--CAWVMTCAFSPTGQSV-ACGGLDSVCSI 135
           R+ I++ ++  +L+V +         I +       M    +P G+   A          
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
            +L +          +        +       PD  T  I  S  +  +        R +
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLF--GAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118

Query: 196 VFGGEF-----QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--------- 241
           ++  E             +  ++ +   S+++     D      +               
Sbjct: 119 LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEA 177

Query: 242 -----------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290
                        +                D +     +        D+ TG       +
Sbjct: 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237

Query: 291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 350
                          +++     A  +      +D      +  +             + 
Sbjct: 238 IMDVFYFS------TAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-----LPHSYYSVN 286

Query: 351 LSADGSALCTGSWDTNLKV 369
           +S DGS +  G    +L  
Sbjct: 287 VSTDGSTVWLGGALGDLAA 305

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 62.1 bits (149), Expect = 2e-11
 Identities = 30/295 (10%), Positives = 68/295 (23%), Gaps = 32/295 (10%)

Query: 62  TLQGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC----- 115
           T+                     + ++   L+  + +T +    I L             
Sbjct: 28  TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA 87

Query: 116 AFSPTGQSVACGGLDSVCSIFNLNS--PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 173
           A SP G+++A         + +           +          +            D  
Sbjct: 88  ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS 147

Query: 174 LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM------------ 221
            +   G    V+      L        +++   A    +++   +               
Sbjct: 148 KLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK 207

Query: 222 ----FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 277
                   +  +     D      A+R     +    +    P   R            F
Sbjct: 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR--AFGAYNVLESF 265

Query: 278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 332
           D+     ++     H         S+  S  G  ++ G + GD   +D    +  
Sbjct: 266 DLEKNASIKRVPLPHS------YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 25/231 (10%), Positives = 54/231 (23%), Gaps = 17/231 (7%)

Query: 66  HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA 125
               +   +            Q  R+ +++A T  +  A +     +   A++  G  + 
Sbjct: 92  DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLY 150

Query: 126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 185
             G D         +      + P+    +                      +       
Sbjct: 151 GLGRDLHVMDPEAGTLV---EDKPIQSWEAETYAQPDVLAVWNQ-HESSGVMATPFYTAR 206

Query: 186 WDITTGLRTSVFGG-EFQSGHTADVLSVSISGSNSRMF---------VSGSCDSTARLWD 235
            DI     T+   G       T ++    +   +   F          +    +    +D
Sbjct: 207 KDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFD 266

Query: 236 TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286
                 A            +V    DG+    G   G    +D  T  +  
Sbjct: 267 L--EKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.4 bits (157), Expect = 1e-12
 Identities = 35/298 (11%), Positives = 86/298 (28%), Gaps = 44/298 (14%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
             +T+ GH   + +L      N ++S S DGR++ W++ +  + H+       +++   S
Sbjct: 5   VLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQDHS-----NLIVSLDNS 55

Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK---GYVSCCQYVPDEDTHLI 175
              Q  +    D    +  +            S    G             +      +I
Sbjct: 56  K-AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114

Query: 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGH-----------------TADVLSVSISGSN 218
            S    +       +    +V   E  +                    A    +SIS S 
Sbjct: 115 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 174

Query: 219 SRMFVSGSC---------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 269
           + +                   +       +  +        +    +   + +   TGS
Sbjct: 175 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS 234

Query: 270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327
            D    ++ ++   ++      H +     V ++ +     L+ +G ++     W+ +
Sbjct: 235 LDTNIFIYSVKRPMKIIKALNAHKD----GVNNLLWETPSTLVSSG-ADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.9 bits (96), Expect = 6e-05
 Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 14/84 (16%)

Query: 241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300
             ++T  GH   +  +      N   +GS DG    +   + H      Q H       +
Sbjct: 4   EVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMH------QDHSN----LI 49

Query: 301 TSIAFSISGRLLFAGYSNGDCYVW 324
            S+  S +       + +      
Sbjct: 50  VSLDNSKAQEYSSISWDDTLKVNG 73

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 1e-04
 Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 15/115 (13%)

Query: 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH 205
           G+  V + +SGH   ++     P     LI+ S D   + W  ++  +           H
Sbjct: 1   GHDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ----------DH 45

Query: 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP 260
           +  ++S+  S +     +S                   +    +      V    
Sbjct: 46  SNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND 100

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 65.3 bits (157), Expect = 2e-12
 Identities = 30/270 (11%), Positives = 62/270 (22%), Gaps = 7/270 (2%)

Query: 56  DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115
            L        H+ +      +       S    G + +W+   +       +P       
Sbjct: 47  SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK 106

Query: 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175
             S   +S     +      F      D   +       +     V      P       
Sbjct: 107 DISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS 166

Query: 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 235
             +                        S       S+  S       V  +     +   
Sbjct: 167 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG- 225

Query: 236 TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295
             V          H G V  + + PDG +  + S D T +++++ T    +         
Sbjct: 226 --VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR-- 281

Query: 296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325
                  +    + + L +  +NG     +
Sbjct: 282 --IEDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.2 bits (136), Expect = 8e-10
 Identities = 42/304 (13%), Positives = 85/304 (27%), Gaps = 16/304 (5%)

Query: 68  GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG 127
           G    L  T   ++I   +    +      +   T               SP+G   A G
Sbjct: 18  GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187
            +     I++            +   +    G V    +  +                  
Sbjct: 77  DVHGNVRIWD-----TTQTTHILKTTIPVFSGPVKDISWDSESKRI-----AAVGEGRER 126

Query: 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH 247
                              A  ++      +    +    D            +   TF 
Sbjct: 127 FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG 186

Query: 248 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP--HVTSIAF 305
            H   V++V++ PDG+ F +   DGT  L++   G +  V+     +N      V  + +
Sbjct: 187 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 246

Query: 306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365
           S  G  + +  ++    +W+    KV     ++          LG+     AL + S + 
Sbjct: 247 SPDGTKIASASADKTIKIWNVATLKV---EKTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 366 NLKV 369
            +  
Sbjct: 304 FINF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.0 bits (99), Expect = 4e-05
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 1/85 (1%)

Query: 55  TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP-CAWVM 113
                      H+G V+ L W+ +  +I SAS D  + +WN  T +    I +       
Sbjct: 226 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 285

Query: 114 TCAFSPTGQSVACGGLDSVCSIFNL 138
                 T Q++     +   +  N 
Sbjct: 286 QLGIIWTKQALVSISANGFINFVNP 310

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 65.2 bits (158), Expect = 3e-12
 Identities = 32/265 (12%), Positives = 76/265 (28%), Gaps = 15/265 (5%)

Query: 67  AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC 126
             ++   D   E    V+    G++ + +  T +    +      V     S +G+ +  
Sbjct: 22  TQQMNDWDL--ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFV 78

Query: 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186
            G D   ++ +L     +   +   ++ S  +   +      ++   +  +      V+ 
Sbjct: 79  IGRDGKVNMIDLW--MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136

Query: 187 D--------ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
           D        I +    +    E+       V ++  S       V+        L D   
Sbjct: 137 DGETLEPKKIQSTRGMTYDEQEY--HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 194

Query: 239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298
            +    T    E  ++          F T ++     +       +L       G+   P
Sbjct: 195 LNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHP 254

Query: 299 HVTSIAFSISGRLLFAGYSNGDCYV 323
              +     +   ++A    GD  V
Sbjct: 255 GRGANFVHPTFGPVWATSHMGDDSV 279

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 65.2 bits (158), Expect = 3e-12
 Identities = 19/154 (12%), Positives = 32/154 (20%), Gaps = 10/154 (6%)

Query: 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280
             V+        L D                 V+  +    G        DG   + D+ 
Sbjct: 34  FSVTLRDAGQIALIDGS-TYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLW 91

Query: 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKVVL------ 333
                 V   + G       TS       +   A  Y      + D    +         
Sbjct: 92  MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG 151

Query: 334 -NLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366
                 +   E R+  +  S           +T 
Sbjct: 152 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 185

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 34/341 (9%), Positives = 76/341 (22%), Gaps = 42/341 (12%)

Query: 61  RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-----PCAWVMTC 115
             L      V+    ++    +    +DG++ + +    + T   ++       +   + 
Sbjct: 56  TVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSK 114

Query: 116 AFSPTGQSV-ACGGLDSVCSIFNLNS----PTDKDGNLPVSRMLSGHKGYVSCCQYVPDE 170
                 +   A         I +  +           +         +  V+        
Sbjct: 115 MEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 174

Query: 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230
              ++        +L D T                    L       + R F++ +    
Sbjct: 175 PEFIVNVKETGKILLVDYTDLNNLKTT-----EISAERFLHDGGLDGSHRYFITAANARN 229

Query: 231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR---TGHQLQV 287
             +         +       G         +      G    T  + D      G   + 
Sbjct: 230 KLVVIDT-KEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG 288

Query: 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW-DTLLAKVVLNLGSLQNSHEGRI 346
           +     +     +     ++ G  LF        Y++ D  L       GS+        
Sbjct: 289 HPDNAWK-----ILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVA------- 336

Query: 347 TCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPWGVK 387
                  D  A+     D   K       + E A    G  
Sbjct: 337 -----VFDIKAMTGDGSDPEFKT----LPIAEWAGITEGQP 368

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.5 bits (147), Expect = 3e-11
 Identities = 33/284 (11%), Positives = 92/284 (32%), Gaps = 18/284 (6%)

Query: 53  GPTDLVCCRTLQGHAGK-VYSLDWTSERN--RIVSASQDGRLIVWNALTSQKTHAIKLPC 109
           G + +       GH    V ++ ++  +    + S  + G++IVW     ++++++++  
Sbjct: 48  GDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV 107

Query: 110 --------AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV 161
                     +   ++   G+ +   G         ++  +           +SGH   +
Sbjct: 108 KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS-----LGEVSGHSQRI 162

Query: 162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221
           + C          +T   D + V +       ++      + G     +  S       +
Sbjct: 163 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI 222

Query: 222 FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281
            V      +     +    + +               + D  +F T   D T R++D+ T
Sbjct: 223 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT 282

Query: 282 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325
              +Q  +    +        +  + +GR++ +   +G    ++
Sbjct: 283 SKCVQK-WTLDKQQLGNQQVGVVATGNGRII-SLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (131), Expect = 4e-09
 Identities = 34/223 (15%), Positives = 64/223 (28%), Gaps = 6/223 (2%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
                Q  AG +  + W  E  R+    +                  ++           
Sbjct: 107 VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG-HSQRINAC 165

Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
              QS     +        +             R       +V   ++ PD    +IT  
Sbjct: 166 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 225

Query: 179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
            D+    +D  +G        + +          ++S  +S+ F +   D+T R+WD   
Sbjct: 226 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIF---ALSWLDSQKFATVGADATIRVWDVTT 282

Query: 239 ASR-AVRTFHGHEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDI 279
           +      T    +     V     GN R  + S DGT   +++
Sbjct: 283 SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 8e-07
 Identities = 34/278 (12%), Positives = 66/278 (23%), Gaps = 16/278 (5%)

Query: 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY-VSCCQYVP 168
            +    ++ PT  ++A     S      +    D D  +P     +GH    V+  ++ P
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAF----VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73

Query: 169 DED-THLITSSGDQTCVLWDITTGLRTSVFGGEF---QSGHTADVLSVSISGSNSRM-FV 223
            +   +L +       ++W  T    ++                +  +S      R+  V
Sbjct: 74  IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133

Query: 224 SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283
               D+          +         +             R  T  DDG+   +      
Sbjct: 134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 193

Query: 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE 343
                   H +     V  + FS           +          +   L          
Sbjct: 194 FSASDRTHHKQGS--FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV 251

Query: 344 GRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL 381
                     D     T   D  ++V    W V     
Sbjct: 252 QGGIFALSWLDSQKFATVGADATIRV----WDVTTSKC 285

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 61.7 bits (148), Expect = 4e-11
 Identities = 28/297 (9%), Positives = 71/297 (23%), Gaps = 36/297 (12%)

Query: 65  GHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAW------VMTCAF 117
                  +     +     V  +  G +   +  T + T    L          + + A 
Sbjct: 37  PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI 96

Query: 118 SPTGQSVACGGLDSVCSIFNLNSPTDK-----DGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
           SP G+ V      +     +      +       +   ++ +               +D 
Sbjct: 97  SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 156

Query: 173 HLITSSGDQTCVLWDITTGLRT-----------------SVFGGEFQSGHTADVLSVSIS 215
            L  +  D   +                             +  +      + + +++  
Sbjct: 157 SLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 216

Query: 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 275
             + +   +          D +      + F        T    P       G  +    
Sbjct: 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLA 275

Query: 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 332
            +D++    ++     H          +AF   G  L+ G +  D  V++    + V
Sbjct: 276 KYDLKQRKLIKAANLDHT------YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 29/270 (10%), Positives = 68/270 (25%), Gaps = 24/270 (8%)

Query: 33  LLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLI 92
            +D+D    +     + V       +    +     +VY+    ++R       +  RL 
Sbjct: 66  GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLE 125

Query: 93  VWNALTSQKTHAIKL--PCAWVMTCAFSPTGQSVACGGLDSVC---------SIFNLNSP 141
           V++     +   ++       V     +  G     G               ++   N  
Sbjct: 126 VFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWN 185

Query: 142 TDKDGNLPVSRMLSGHKG-----YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV 196
                   V               +       D+     T+      +  D+ TG     
Sbjct: 186 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH-- 243

Query: 197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV 256
              +  +  T    +   S  +          +    +D     R +      +     V
Sbjct: 244 --TQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDL--KQRKLIKAANLDHTYYCV 297

Query: 257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286
            F   G++   G       +F+  T  +++
Sbjct: 298 AFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 48.6 bits (114), Expect = 5e-07
 Identities = 14/169 (8%), Positives = 32/169 (18%), Gaps = 18/169 (10%)

Query: 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230
             ++I ++      + D+ +                    +  ++  N   +V  +    
Sbjct: 8   HEYMIVTNYPNNLHVVDVASDTVY----KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 231 ARLWDTRVASRAVRTFHG-----HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 285
               D                      + +    PDG       +               
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 286 QVYYQQ---------HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325
              +                   V  +  +  G L  AG       V  
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKT 172

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 14/118 (11%), Positives = 27/118 (22%), Gaps = 7/118 (5%)

Query: 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF-AGYSN 318
                    +      + D+ +    +               +   +   R  +      
Sbjct: 6   AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFG----PGTAMMAPDNRTAYVLNNHY 61

Query: 319 GDCYVWDTLLAKVV--LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFW 374
           GD Y  D    K     NL S+       +    +S DG  +      T    +    
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 55.7 bits (133), Expect = 4e-09
 Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 2/104 (1%)

Query: 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280
             V+        L D   + + V+        V+  +    G        D    + D+ 
Sbjct: 34  FSVTLRDAGQIALVDGD-SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLW 91

Query: 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324
                +V   + G       +S       R   AG      +  
Sbjct: 92  AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI 135

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.1 bits (121), Expect = 1e-07
 Identities = 26/279 (9%), Positives = 68/279 (24%), Gaps = 10/279 (3%)

Query: 73  LDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132
            D        V+    G++ + +  + +    I      V     S +G+ +   G D+ 
Sbjct: 26  NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDAR 84

Query: 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 192
             + +L     +   +   ++    +   S      ++   +  +       + D  T  
Sbjct: 85  IDMIDLW--AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 142

Query: 193 RTSVFGGEFQSGHTADVLS----VSISGSNSRMFVSGSCDSTARLWDTRVASRA--VRTF 246
              +      +  T          +I  S+       +   T ++             T 
Sbjct: 143 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS 202

Query: 247 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306
            G    +    +      F T +++            +L                +    
Sbjct: 203 IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHP 262

Query: 307 ISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEG 344
             G +    +  +G   +  T                +G
Sbjct: 263 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG 301

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.9 bits (97), Expect = 8e-05
 Identities = 34/299 (11%), Positives = 75/299 (25%), Gaps = 38/299 (12%)

Query: 61  RTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP 119
           +          S     E R  I  A    +  + +  T +    +      V T  + P
Sbjct: 102 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 161

Query: 120 TGQSVACGGLDSVCSIFNLNSPTDK------DGNLPVSRMLSGHKGYVSCCQYVPDEDTH 173
             +  A                T K           ++    G   +++   +       
Sbjct: 162 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYF 221

Query: 174 LITSSGDQTCVLWDITTGLRTSVF----------GGEFQSGHTADVLSVSISGSNSRMFV 223
           +  ++      + D      +++           G  F       V S S  G +  + +
Sbjct: 222 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG-DGSISL 280

Query: 224 SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-------GTGSDDGTCRL 276
            G+       +  +     V    G  G    +K  P  +                +  +
Sbjct: 281 IGTDPKNHPQYAWKK----VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV 336

Query: 277 FDIRTGHQ----LQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGD----CYVWDT 326
           FD++        L +            V    ++  G  + F+ ++  +      V D 
Sbjct: 337 FDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 395

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 16/102 (15%), Positives = 26/102 (25%), Gaps = 9/102 (8%)

Query: 267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD- 325
           T  D G   L D  +   ++V     G     H      S SGR L     +    + D 
Sbjct: 37  TLRDAGQIALVDGDSKKIVKVI--DTGYA--VH--ISRMSASGRYLLVIGRDARIDMIDL 90

Query: 326 -TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366
                  V  +           +      +      G++   
Sbjct: 91  WAKEPTKVAEIKIGIE-ARSVESSKFKGYEDRYTIAGAYWPP 131

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.9 bits (120), Expect = 1e-07
 Identities = 25/261 (9%), Positives = 56/261 (21%), Gaps = 22/261 (8%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-------PCAW 111
             R L G    + SL    +       S    + V +         + +       P A 
Sbjct: 99  APRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAP 158

Query: 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED 171
                    G                       +    ++      K             
Sbjct: 159 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW--PTYTG 216

Query: 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH------TADVLSVSISGSNSRMFVSG 225
                               L  +     ++ G          +  + +       +   
Sbjct: 217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 276

Query: 226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR--FGTGSDDGTCRLFDIRTGH 283
           +      + D    +           +++++    D     +   + D T  + D  +G 
Sbjct: 277 TASRFVVVLDA--KTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 334

Query: 284 QLQVYYQQHGENEIPHVTSIA 304
           +L+    Q G    P V + A
Sbjct: 335 ELRS-VNQLGHG--PQVITTA 352

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 21/179 (11%), Positives = 42/179 (23%), Gaps = 24/179 (13%)

Query: 209 VLSVSISGSNSRMFVS----GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR 264
            +  + +    R++V+     +  +   + D   A R +    G  G +       DG+ 
Sbjct: 4   RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGE-AGRVIGMIDG--GFLPNPVVADDGSF 60

Query: 265 F----------GTGSDDGTCRLFDIRTGHQLQVYYQQHGENE--IPHVTSIAFSISGRLL 312
                        G       +FD  T                   +    + +  G+ L
Sbjct: 61  IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTL 120

Query: 313 FAGYSNGDCYVWDTLLA-----KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366
                +    V    L      +++              T      DGS          
Sbjct: 121 LFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG 179

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (97), Expect = 7e-05
 Identities = 29/227 (12%), Positives = 56/227 (24%), Gaps = 26/227 (11%)

Query: 56  DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL------PC 109
           DL      +          + +  +      +DG L      T                 
Sbjct: 135 DLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 194

Query: 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT-----DKDGNLPVSRMLSGHKGYVSCC 164
             +   A+S     +            +L+S         +      R      G     
Sbjct: 195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQV 254

Query: 165 QYVPD---------EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215
            Y            +       +  +  V+ D  TG R + F      GH  D ++VS  
Sbjct: 255 AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM----GHEIDSINVSQD 310

Query: 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262
                ++   + D T  + D   +   +R+ +        +     G
Sbjct: 311 E-KPLLYALSTGDKTLYIHDAE-SGEELRSVNQLGHGPQVITTADMG 355

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.2 bits (116), Expect = 3e-07
 Identities = 15/239 (6%), Positives = 49/239 (20%), Gaps = 23/239 (9%)

Query: 64  QGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC------- 115
                +V+ +   +    +             +   +      K    + +         
Sbjct: 120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHY 179

Query: 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175
             S      A     +  +   + +      N       + + G +          + L 
Sbjct: 180 LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML----VWAVASSILQ 235

Query: 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS------GSCDS 229
                    +     G  +      F    +A    V+   +   + +           +
Sbjct: 236 GDIPAAGATMKAAIDGNESGRKADNF---RSAGFQMVAKLKNTDGIMILTVEHSRSCLAA 292

Query: 230 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR--FGTGSDDGTCRLFDIRTGHQLQ 286
                    +         +  D + +    DG    +   +      ++D  +     
Sbjct: 293 AENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 23/181 (12%), Positives = 35/181 (19%), Gaps = 18/181 (9%)

Query: 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD 261
             G + D          S + +      T   W +          H     ++       
Sbjct: 18  SDGSSCDH-GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLG-HSLGAFLSLAVAGHS 75

Query: 262 G----------NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE--NEIPHVTSIAFSISG 309
           G           R   G       +FD  T   +           +  P V  I    S 
Sbjct: 76  GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS 135

Query: 310 R-LLFAGYSNGDCYVWDTLLAKVVLNL---GSLQNSHEGRITCLGLSADGSALCTGSWDT 365
             LLF  + +          A                    T    S   S   +     
Sbjct: 136 ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAA 195

Query: 366 N 366
            
Sbjct: 196 P 196

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 12/106 (11%), Positives = 30/106 (28%), Gaps = 4/106 (3%)

Query: 221 MFVSGSCDSTARLWDT-RVASRAVRTFHGHEGDVNTVKFFPDGNR-FGTGSDDGTCRLFD 278
           ++++        +W+     +  +       G V  +   PD    +     +     + 
Sbjct: 6   VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324
           I        +  +        +T I+    G+ +F G  N      
Sbjct: 66  IAPDDGALTFAAES--ALPGSLTHISTDHQGQFVFVGSYNAGNVSV 109

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.8 bits (96), Expect = 9e-05
 Identities = 8/82 (9%), Positives = 23/82 (28%), Gaps = 3/82 (3%)

Query: 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR-FGTGSDDGTCRLF 277
           +  +++ S      + D   +++   T              PDG + +   +      + 
Sbjct: 2   TFAYIANSESDNISVIDVT-SNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSII 59

Query: 278 DIRTGHQLQVYYQQHGENEIPH 299
           D  T + +           +  
Sbjct: 60  DTATNNVIATVPAGSSPQGVAV 81

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.7 bits (88), Expect = 9e-04
 Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 175 ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 234
           I +S      + D+T+   T+           ++ +   IS   ++++V+ +  +   + 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVG------SNPMGAVISPDGTKVYVANAHSNDVSII 59

Query: 235 DT 236
           DT
Sbjct: 60  DT 61

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 34/275 (12%), Positives = 73/275 (26%), Gaps = 26/275 (9%)

Query: 83  VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSP 141
           ++ S+   + V +  +++ T  I +  +  M    SP G  V       +  SI +  + 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201
                    S              YV +  +  ++     +  +       ++ +     
Sbjct: 65  NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124

Query: 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD----------------TRVASRAVRT 245
             G    V +      +    V+ +  +T  +                      S ++  
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184

Query: 246 FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI-------P 298
                  V               + +GT         +   V     G N+I       P
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244

Query: 299 HVTSIAFSISGRLLF-AGYSNGDCYVWDTLLAKVV 332
               IA +  G+ ++ A        V DT    + 
Sbjct: 245 DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT 279

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	389
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.95
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.92
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.9
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.89
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.87
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.78
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.76
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.69
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.69
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.53
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.51
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.5
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.48
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.48
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.47
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.45
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.44
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.44
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.43
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.4
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.4
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.37
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.31
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.31
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.3
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.1
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.98
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.97
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.92
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.74
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.7
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.57
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.5
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.42
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.38
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.29
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.21
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.19
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.17
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.17
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.11
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.1
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.08
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.04
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.0
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.96
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.91
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.86
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.74
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.71
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.42
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.06
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	97.02
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.01
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.84
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.83
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	96.63
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.44
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.07
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.49
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.32
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.91
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.05
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	93.84
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.09
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	91.48
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	90.86
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	89.92
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	87.74

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-50  Score=344.72  Aligned_cols=337  Identities=47%  Similarity=0.947  Sum_probs=286.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcE
Q 016458           12 HAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRL   91 (389)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v   91 (389)
                      ++++++|.++|++++++.++...+.............    ....++..++|+||.++|++++|+|++++||+|+.||+|
T Consensus         4 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v   79 (340)
T d1tbga_           4 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPV----GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKL   79 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHTTTSCCC----CCCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccchHHHHhhccCcc----cccceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCce
Confidence            4556666666666666666555444443333322222    235678889999999999999999999999999999999


Q ss_pred             EEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCC
Q 016458           92 IVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED  171 (389)
Q Consensus        92 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  171 (389)
                      +|||+.+++.+..+..|..+|.+++|+|++.++++|+.|+.+.+|+.....   ........+.+|............  
T Consensus        80 ~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--  154 (340)
T d1tbga_          80 IIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE---GNVRVSRELAGHTGYLSCCRFLDD--  154 (340)
T ss_dssp             EEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSC---SCCCEEEEECCCSSCEEEEEEEET--
T ss_pred             eeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccc---cccccceecccccccccccccccc--
Confidence            999999999999999999999999999999999999999999999987743   233345667778777777666664  


Q ss_pred             cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeecc
Q 016458          172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG  251 (389)
Q Consensus       172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  251 (389)
                      ..+.....+.....++..........     ..+...+....+.+ ...++++++.|+.|++||+++. ..+..+.+|..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~-~~~~~~~~h~~  227 (340)
T d1tbga_         155 NQIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREG-MCRQTFTGHES  227 (340)
T ss_dssp             TEEEEEETTTEEEEEETTTTEEEEEE-----ECCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTT-EEEEEECCCSS
T ss_pred             cccccccccccccccccccccccccc-----cccceeEeeecccc-ccceeEEeecCceEEEEECCCC-cEEEEEeCCCC
Confidence            47888899999999999888777766     56778888888888 8889999999999999999987 78888999999


Q ss_pred             ceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE
Q 016458          252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  331 (389)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (389)
                      +|++++|+|++++|++++.||.|++||++.......+..   ..+...+.+++|+|++++|++|+.||.|++||+.+++.
T Consensus       228 ~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~  304 (340)
T d1tbga_         228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR  304 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccc---ccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcE
Confidence            999999999999999999999999999998877766543   22334599999999999999999999999999999999


Q ss_pred             EEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458          332 VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR  375 (389)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~  375 (389)
                      +..+    .+|.++|++++|+|++++|++|+.||.|+|    ||
T Consensus       305 ~~~~----~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~i----Wd  340 (340)
T d1tbga_         305 AGVL----AGHDNRVSCLGVTDDGMAVATGSWDSFLKI----WN  340 (340)
T ss_dssp             EEEE----CCCSSCEEEEEECTTSSCEEEEETTSCEEE----EC
T ss_pred             EEEE----cCCCCCEEEEEEeCCCCEEEEEccCCEEEE----eC
Confidence            9999    789999999999999999999999999999    97

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-49  Score=333.21  Aligned_cols=292  Identities=20%  Similarity=0.360  Sum_probs=254.5

Q ss_pred             CCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee---E--EEeeCCCcEEEEEECCCCcEEEEec
Q 016458           54 PTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT---H--AIKLPCAWVMTCAFSPTGQSVACGG  128 (389)
Q Consensus        54 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~---~--~~~~~~~~v~~~~~~~~~~~l~~~~  128 (389)
                      |...+.++++ +|...|+|++|+|+|++||+|+ ||.|+|||+.++...   .  ....|...|.+++|+|++++|++|+
T Consensus        39 p~~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~  116 (337)
T d1gxra_          39 PRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG  116 (337)
T ss_dssp             CSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred             CCCceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEee
Confidence            4566777777 7999999999999999999987 799999999765432   2  2346778899999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCC
Q 016458          129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD  208 (389)
Q Consensus       129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  208 (389)
                      .||.|++||+....     ......+..|...+.++.|+|++ .++++++.|+.|++|++.+++.....     ..|...
T Consensus       117 ~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~~~~-----~~~~~~  185 (337)
T d1gxra_         117 EASTLSIWDLAAPT-----PRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQF-----QGHTDG  185 (337)
T ss_dssp             SSSEEEEEECCCC-------EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSC
T ss_pred             cccccccccccccc-----ccccccccccccccccccccccc-cccccccccccccccccccccccccc-----cccccc
Confidence            99999999987633     22456677899999999999987 78999999999999999999988877     688999


Q ss_pred             eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEe
Q 016458          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY  288 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  288 (389)
                      +.+++|++ ++..+++++.|+.+++||+++. +.+..+ .|...|.+++|+|++++|++++.||.+++||++++......
T Consensus       186 v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~-~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  262 (337)
T d1gxra_         186 ASCIDISN-DGTKLWTGGLDNTVRSWDLREG-RQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH  262 (337)
T ss_dssp             EEEEEECT-TSSEEEEEETTSEEEEEETTTT-EEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC
T ss_pred             cccccccc-cccccccccccccccccccccc-eeeccc-ccccceEEEEEcccccccceecccccccccccccccccccc
Confidence            99999998 8889999999999999999977 555544 48889999999999999999999999999999988765432


Q ss_pred             eccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458          289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK  368 (389)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  368 (389)
                            .+...|++++|+|++++|++++.||.|++||+.+++.+..+     .|...|++++|+|++++|++|+.||.|+
T Consensus       263 ------~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-----~~~~~v~~~~~s~d~~~l~t~s~D~~I~  331 (337)
T d1gxra_         263 ------LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----KESSSVLSCDISVDDKYIVTGSGDKKAT  331 (337)
T ss_dssp             ------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----ECSSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             ------ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-----cCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence                  23335999999999999999999999999999999988776     4778999999999999999999999999


Q ss_pred             Eeecceec
Q 016458          369 VNLGFWRV  376 (389)
Q Consensus       369 i~~~~W~~  376 (389)
                      |    ||+
T Consensus       332 v----Wdl  335 (337)
T d1gxra_         332 V----YEV  335 (337)
T ss_dssp             E----EEE
T ss_pred             E----EEE
Confidence            9    997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-48  Score=328.84  Aligned_cols=296  Identities=25%  Similarity=0.410  Sum_probs=270.2

Q ss_pred             ccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC
Q 016458           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD  130 (389)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  130 (389)
                      .|.|.. ...++|+||+++|++|+|+|++++|+||+.||+|+|||+.+++.+..+..|...|.+++|+|++.+++++..+
T Consensus         2 ~w~p~~-~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~   80 (317)
T d1vyhc1           2 EWIPRP-PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD   80 (317)
T ss_dssp             CCCCCS-SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccCCCC-CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccc
Confidence            455543 3456899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  210 (389)
                      +.+.+|+.....       ....+..|...+.++.+++++ ..+++++.|+.+++||+.++.....+     ..|...+.
T Consensus        81 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~  147 (317)
T d1vyhc1          81 MTIKLWDFQGFE-------CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTF-----TGHREWVR  147 (317)
T ss_dssp             SCCCEEETTSSC-------EEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEE-----ECCSSCEE
T ss_pred             cccccccccccc-------cccccccccccceeeeccCCC-ceEEeeccCcceeEeecccceeeeEE-----ccCCCcce
Confidence            999999987644       566677889999999999997 68999999999999999999998888     68889999


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecC--------------------CCEEEEEec
Q 016458          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD--------------------GNRFGTGSD  270 (389)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~  270 (389)
                      +++++| ++.+|++++.|+.|++|+.+.. .....+..|...+.+++|+|+                    +.++++++.
T Consensus       148 ~~~~~~-~~~~l~~~~~d~~v~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (317)
T d1vyhc1         148 MVRPNQ-DGTLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR  225 (317)
T ss_dssp             EEEECT-TSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred             eeeccc-CCCEEEEEeCCCeEEEEeeccc-eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC
Confidence            999999 8899999999999999999987 778888899999999999875                    357899999


Q ss_pred             CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEE
Q 016458          271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  350 (389)
Q Consensus       271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  350 (389)
                      |+.|++||+++++.+..+..+..     .|.+++|+|++++|++|+.||.|++||+.+++.+..+    .+|.++|++++
T Consensus       226 d~~i~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~h~~~V~~~~  296 (317)
T d1vyhc1         226 DKTIKMWDVSTGMCLMTLVGHDN-----WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL----NAHEHFVTSLD  296 (317)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSS-----CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE----ECCSSCEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEeCCCC-----CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE----cCCCCCEEEEE
Confidence            99999999999998888765443     5999999999999999999999999999999999998    78999999999


Q ss_pred             ECCCCCeEEeeeCCCeeEEeeccee
Q 016458          351 LSADGSALCTGSWDTNLKVNLGFWR  375 (389)
Q Consensus       351 ~~~~~~~l~~~~~dg~i~i~~~~W~  375 (389)
                      |+|++++|++|+.||.|+|    ||
T Consensus       297 ~s~~~~~l~s~s~Dg~i~i----Wd  317 (317)
T d1vyhc1         297 FHKTAPYVVTGSVDQTVKV----WE  317 (317)
T ss_dssp             ECSSSSCEEEEETTSEEEE----EC
T ss_pred             EcCCCCEEEEEeCCCeEEE----eC
Confidence            9999999999999999999    97

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-46  Score=325.25  Aligned_cols=292  Identities=21%  Similarity=0.403  Sum_probs=243.3

Q ss_pred             ecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEee------------------CCCcEEEEEECCCCcE
Q 016458           62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL------------------PCAWVMTCAFSPTGQS  123 (389)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~  123 (389)
                      ...+|++.|+||+|+|+|++||+|+ |++|+|||+.+++.+..+..                  |...|.+++|+|++++
T Consensus        57 ~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~  135 (388)
T d1erja_          57 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  135 (388)
T ss_dssp             EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence            3347999999999999999999986 88999999999988776643                  4556999999999999


Q ss_pred             EEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccC
Q 016458          124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS  203 (389)
Q Consensus       124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  203 (389)
                      |++|+.||.|++|+...+.       ......+|...|.++.+++++ ..+++++.++.+++||..+.......      
T Consensus       136 l~s~~~dg~v~i~~~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~------  201 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRK-------IVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTL------  201 (388)
T ss_dssp             EEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEE------
T ss_pred             ceecccccccccccccccc-------ccccccccccccccccccccc-ccccccccceeeeeeecccccccccc------
Confidence            9999999999999998754       567778899999999999987 68999999999999999998877766      


Q ss_pred             CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeE-------EeeeccceEEEEEecCCCEEEEEecCCeEEE
Q 016458          204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-------FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL  276 (389)
Q Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  276 (389)
                      .+.....++.+.+.++++|++++.||.|++||.++. .....       ..+|...|.+++|+|++++|++++.||.|++
T Consensus       202 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~i  280 (388)
T d1erja_         202 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL  280 (388)
T ss_dssp             ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ccccccccccccCCCCCeEEEEcCCCeEEEeecccC-ccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEE
Confidence            344556777787778999999999999999999876 33333       3457889999999999999999999999999


Q ss_pred             EECCCCceeeEeeccC-------CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEE
Q 016458          277 FDIRTGHQLQVYYQQH-------GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  349 (389)
Q Consensus       277 ~d~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  349 (389)
                      ||++++..........       ...+...|.+++|+|++++|++|+.||.|++||+.+++.+..+    .+|.+.|+++
T Consensus       281 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l----~~H~~~V~~~  356 (388)
T d1erja_         281 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML----QGHRNSVISV  356 (388)
T ss_dssp             EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE----ECCSSCEEEE
T ss_pred             EeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE----eCCCCCEEEE
Confidence            9998765433221111       1123446999999999999999999999999999999999999    7899999999


Q ss_pred             EE------CCCCCeEEeeeCCCeeEEeecceecc
Q 016458          350 GL------SADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       350 ~~------~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      ++      +|++.+|++|+.||.|+|    |+++
T Consensus       357 ~~~~~~~~spd~~~l~s~s~Dg~I~i----W~~~  386 (388)
T d1erja_         357 AVANGSSLGPEYNVFATGSGDCKARI----WKYK  386 (388)
T ss_dssp             EECSSCTTCTTCEEEEEEETTSEEEE----EEEE
T ss_pred             EEecCcccCCCCCEEEEEeCCCEEEE----Eeee
Confidence            75      678999999999999999    9985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.8e-46  Score=312.19  Aligned_cols=293  Identities=17%  Similarity=0.191  Sum_probs=248.4

Q ss_pred             cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCC
Q 016458           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK  144 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  144 (389)
                      .+++.+.+++++|+|+.|+.++ ++.|.+||+.++.....+..|...|++++|+|+|++|++|+.||.|++||+....  
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~--   91 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT--   91 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT--
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc--
Confidence            3556677899999999999885 5679999999999999999999999999999999999999999999999998744  


Q ss_pred             CCCCcceeeecccccceEEEEEeeCCCcEEEEeeC--CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458          145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (389)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  222 (389)
                         ......+..|.++|.+++|+|++ +++++++.  +..+++|++.+++....+     ..|...|.+++|+|.+..+|
T Consensus        92 ---~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~~~~~~~l-----~~h~~~v~~v~~~~~~~~~l  162 (311)
T d1nr0a1          92 ---HILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGTSNGNL-----TGQARAMNSVDFKPSRPFRI  162 (311)
T ss_dssp             ---CCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCCBCBCC-----CCCSSCEEEEEECSSSSCEE
T ss_pred             ---cccccccccccCccccccccccc-cccccccccccccccccccccccccccc-----cccccccccccccccceeee
Confidence               22345678899999999999997 67777765  466999999998887777     78899999999999555578


Q ss_pred             EEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC--CCCCCCe
Q 016458          223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--ENEIPHV  300 (389)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~i  300 (389)
                      ++|+.||.|++||+++. +....+..|..+|.++.|+|++++|++++.||.|++||+.++.....+.....  ..|...|
T Consensus       163 ~sgs~d~~i~i~d~~~~-~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V  241 (311)
T d1nr0a1         163 ISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV  241 (311)
T ss_dssp             EEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred             ccccccccccccccccc-ccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999987 77888889999999999999999999999999999999999887776644322  2355679


Q ss_pred             eEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      ++++|+|++++|++|+.||.|+|||+++++.+.++... ..+...+.++.|  ++.+|++++.||.|++    ||++
T Consensus       242 ~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~-~~~~~~~~~~~~--~~~~l~s~s~dG~i~~----wd~d  311 (311)
T d1nr0a1         242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG-TRIEDQQLGIIW--TKQALVSISANGFINF----VNPE  311 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC-SSGGGCEEEEEE--CSSCEEEEETTCCEEE----EETT
T ss_pred             cccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECC-CCccceEEEEEe--cCCEEEEEECCCEEEE----EeCC
Confidence            99999999999999999999999999999999888421 111234445555  4568999999999999    9974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.9e-44  Score=296.70  Aligned_cols=295  Identities=12%  Similarity=0.151  Sum_probs=232.5

Q ss_pred             eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe-eCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (389)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (389)
                      ...+.+.||.++|++++|+|++++|++|+.||+|++||+.+++....+. .|...|.+++|+|++.++ +++.|+.+++|
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~   81 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVV   81 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccceeeEEEe
Confidence            5678999999999999999999999999999999999999999888774 678899999999999755 55678999999


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  216 (389)
                      +.......    ........+...+.+++|++++ .++ +++.++.+.+|+...  ....       .....+.+++++|
T Consensus        82 ~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~g-~~~-~~~~~~~i~~~~~~~--~~~~-------~~~~~~~~~~~s~  146 (299)
T d1nr0a2          82 PAGGSGVD----SSKAVANKLSSQPLGLAVSADG-DIA-VAACYKHIAIYSHGK--LTEV-------PISYNSSCVALSN  146 (299)
T ss_dssp             CSSSSSSC----TTSCCEEECSSCEEEEEECTTS-SCE-EEEESSEEEEEETTE--EEEE-------ECSSCEEEEEECT
T ss_pred             ccCCcccc----cccccccccccccccccccccc-ccc-ccccccccccccccc--cccc-------ccccccccccccc
Confidence            98764311    1223344567788999999987 444 445567899999543  2222       2334678899998


Q ss_pred             CCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCC
Q 016458          217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE  296 (389)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  296 (389)
                       +++++++++.||.|++||+++..........|...|.+++|+|++++|++++.|+.|++||+.++.........  ..+
T Consensus       147 -~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~--~~h  223 (299)
T d1nr0a2         147 -DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW--TFH  223 (299)
T ss_dssp             -TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC--CCC
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccc
Confidence             88999999999999999998763333345678999999999999999999999999999999887665443322  234


Q ss_pred             CCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceec
Q 016458          297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRV  376 (389)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~  376 (389)
                      ..+|++++|+|++++|++|+.||.|++||+.++........ ...+...|.++.| +++.+|++++.||.|++    ||+
T Consensus       224 ~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~i----Wdl  297 (299)
T d1nr0a2         224 TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK-GAHAMSSVNSVIW-LNETTIVSAGQDSNIKF----WNV  297 (299)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET-TSSTTSCEEEEEE-EETTEEEEEETTSCEEE----EEC
T ss_pred             ccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEe-cCCCCCcEEEEEE-CCCCEEEEEeCCCEEEE----Eec
Confidence            45799999999999999999999999999987643322211 0234456777765 56779999999999999    998


Q ss_pred             c
Q 016458          377 Q  377 (389)
Q Consensus       377 ~  377 (389)
                      .
T Consensus       298 ~  298 (299)
T d1nr0a2         298 P  298 (299)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.3e-44  Score=309.58  Aligned_cols=296  Identities=18%  Similarity=0.281  Sum_probs=238.1

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCC
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK  144 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  144 (389)
                      .++|+|++|+|++++||+|+.||.|+|||..+++  .+..+.+|.++|.+++|+|++++|++|+.|+.|++||+....  
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~--   84 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT--   84 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE--
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc--
Confidence            4689999999999999999999999999998775  566778899999999999999999999999999999997633  


Q ss_pred             CCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEE
Q 016458          145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS  224 (389)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  224 (389)
                         ......+.+|...|.+++|+|++ +.|++++.|+.|++|++........... ....|...|.+++|+| ++.+|++
T Consensus        85 ---~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~p-~~~~l~s  158 (371)
T d1k8kc_          85 ---WKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKH-IKKPIRSTVLSLDWHP-NSVLLAA  158 (371)
T ss_dssp             ---EEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEE-ECTTCCSCEEEEEECT-TSSEEEE
T ss_pred             ---ccccccccccccccccccccccc-ccceeecccCcceeeeeecccccccccc-cccccccccccccccc-cccceec
Confidence               22345567788999999999997 7899999999999999877654322211 1257888999999999 8889999


Q ss_pred             eeCCCceEEEeCCCCC-----------------cceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeE
Q 016458          225 GSCDSTARLWDTRVAS-----------------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV  287 (389)
Q Consensus       225 ~~~dg~i~i~d~~~~~-----------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  287 (389)
                      |+.|+.|++||.....                 ..+.....|...|.+++|+|++++|++++.|+.|++||+.++..+..
T Consensus       159 ~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~  238 (371)
T d1k8kc_         159 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT  238 (371)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred             cccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceee
Confidence            9999999999986431                 23445567888999999999999999999999999999999988888


Q ss_pred             eeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc--ceEEEe-------------------------------
Q 016458          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL--AKVVLN-------------------------------  334 (389)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~-------------------------------  334 (389)
                      +..+..     +|.+++|+|++++|++| .|+.+++|....  +.....                               
T Consensus       239 ~~~~~~-----~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (371)
T d1k8kc_         239 LASETL-----PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG  312 (371)
T ss_dssp             EECSSC-----CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----
T ss_pred             eecccc-----cceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEec
Confidence            765443     49999999999888766 477777665432  221110                               


Q ss_pred             ----ecCcCCCCCCCeeEEEECCCC----CeEEeeeCCCeeEEeecceecccCc
Q 016458          335 ----LGSLQNSHEGRITCLGLSADG----SALCTGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       335 ----~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~i~~~~W~~~~~~  380 (389)
                          .......|.+.|+++++.+.+    ..++|+|.||.|+|    |++++-+
T Consensus       313 ~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~i----W~~~~~~  362 (371)
T d1k8kc_         313 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSI----WDVRSLE  362 (371)
T ss_dssp             -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEE----EEHHHHH
T ss_pred             cccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEE----EeCCcCh
Confidence                000112488899999997744    35899999999999    9997643

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.2e-43  Score=291.53  Aligned_cols=261  Identities=17%  Similarity=0.222  Sum_probs=222.8

Q ss_pred             CcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee--EEEeeCCCcEEEEEECCCCcEEEE
Q 016458           49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT--HAIKLPCAWVMTCAFSPTGQSVAC  126 (389)
Q Consensus        49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~  126 (389)
                      ...|+.......+.+.+|.+.|++++|+|+|++||+|+.||+|++||+.++...  ..+..|..+|.+++|+|++++|++
T Consensus        40 v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~  119 (311)
T d1nr0a1          40 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAA  119 (311)
T ss_dssp             EEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEE
T ss_pred             EEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccc
Confidence            445666777888889999999999999999999999999999999999887754  457788899999999999999999


Q ss_pred             ecC--CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC
Q 016458          127 GGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG  204 (389)
Q Consensus       127 ~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  204 (389)
                      ++.  +..+++|+++..+       ....+.+|...|.+++|+|+++..+++|+.||.|++||+++++....+     ..
T Consensus       120 ~~~~~~~~~~v~~~~~~~-------~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~-----~~  187 (311)
T d1nr0a1         120 VGEGRERFGHVFLFDTGT-------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-----GE  187 (311)
T ss_dssp             EECCSSCSEEEEETTTCC-------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE-----CC
T ss_pred             cccccccccccccccccc-------ccccccccccccccccccccceeeeccccccccccccccccccccccc-----cc
Confidence            876  4569999998754       455678899999999999998667899999999999999999988888     78


Q ss_pred             CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE-------eeeccceEEEEEecCCCEEEEEecCCeEEEE
Q 016458          205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-------HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF  277 (389)
Q Consensus       205 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  277 (389)
                      |...|.++.++| +++++++++.|+.|++||.+.. .....+       .+|...|.+++|+|++++|++|+.||.|++|
T Consensus       188 ~~~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iw  265 (311)
T d1nr0a1         188 HTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW  265 (311)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ccccccccccCc-cccccccccccccccccccccc-cccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEE
Confidence            999999999999 8899999999999999999876 443333       3578899999999999999999999999999


Q ss_pred             ECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      |+++++.+..+..+...  ...+.++.|  ++.+|++++.||.|++||.+
T Consensus       266 d~~t~~~~~~l~~~~~~--~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         266 NVATLKVEKTIPVGTRI--EDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             ETTTTEEEEEEECCSSG--GGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             ECCCCcEEEEEECCCCc--cceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            99999988877554322  112445555  56679999999999999964

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-40  Score=281.36  Aligned_cols=301  Identities=23%  Similarity=0.346  Sum_probs=234.2

Q ss_pred             CCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCc
Q 016458           53 GPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV  132 (389)
Q Consensus        53 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (389)
                      +..+.++.+.|+||.+.|.+ +++++|++||||+.||+|+|||+.+++.+..+.+|...|.+++|+|+  +|++|+.|+.
T Consensus         2 ~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~   78 (342)
T d2ovrb2           2 RRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRT   78 (342)
T ss_dssp             HHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSC
T ss_pred             CCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccc
Confidence            34556777899999999865 35567889999999999999999999999999999999999999874  8999999999


Q ss_pred             EEEEeCCCCCCCC----CCCc-----------------------------ceeeecccccceEEEEEeeCCCcEEEEeeC
Q 016458          133 CSIFNLNSPTDKD----GNLP-----------------------------VSRMLSGHKGYVSCCQYVPDEDTHLITSSG  179 (389)
Q Consensus       133 i~vw~~~~~~~~~----~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  179 (389)
                      +++|+........    ....                             ....+..+..  ......+. ...+++++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~  155 (342)
T d2ovrb2          79 LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA--AVRCVQYD-GRRVVSGAY  155 (342)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSS--CEEEEEEC-SSCEEEEET
T ss_pred             ccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccc--cceeeccc-cceeeeecC
Confidence            9999988643100    0000                             0000000000  11122233 256888899


Q ss_pred             CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEe
Q 016458          180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF  259 (389)
Q Consensus       180 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~  259 (389)
                      |+.|++||.........+     ..|...+..+.+   ++.++++++.||.|++||++.. ..+..+.+|...+.+++++
T Consensus       156 d~~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~  226 (342)
T d2ovrb2         156 DFMVKVWDPETETCLHTL-----QGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMELK  226 (342)
T ss_dssp             TSCEEEEEGGGTEEEEEE-----CCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEEEEEE
T ss_pred             CCeEEEeecccceeeEEE-----cCcccccccccC---CCCEEEEEeCCCeEEEeecccc-eeeeEecccccceeEEecC
Confidence            999999999988888887     567666666555   5678999999999999999987 7888899999999888776


Q ss_pred             cCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCc-
Q 016458          260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL-  338 (389)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-  338 (389)
                        +++|++++.||.|++||+...+....+....  .+...+.++.+  +++++++|+.||.|++||+++++.+..+... 
T Consensus       227 --~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~  300 (342)
T d2ovrb2         227 --DNILVSGNADSTVKIWDIKTGQCLQTLQGPN--KHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE  300 (342)
T ss_dssp             --TTEEEEEETTSCEEEEETTTCCEEEEECSTT--SCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECT
T ss_pred             --CCEEEEEcCCCEEEEEecccccccccccccc--eeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEeccc
Confidence              4699999999999999999888777665433  23334666666  4579999999999999999999988776422 


Q ss_pred             CCCCCCCeeEEEECCCCCeEEeeeCCCe----eEEeecceeccc
Q 016458          339 QNSHEGRITCLGLSADGSALCTGSWDTN----LKVNLGFWRVQE  378 (389)
Q Consensus       339 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~----i~i~~~~W~~~~  378 (389)
                      ..+|.+.|++++|+|++.+|++|+.||+    |++    ||++.
T Consensus       301 ~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~----~Df~~  340 (342)
T d2ovrb2         301 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV----LDFDV  340 (342)
T ss_dssp             TGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEE----EECCC
T ss_pred             CCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEE----EeCCC
Confidence            2467889999999999999999999996    667    99874

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-39  Score=274.79  Aligned_cols=257  Identities=17%  Similarity=0.235  Sum_probs=223.0

Q ss_pred             CCCcccCCCc-----ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC--CeeEEEeeCCCcEEEEEECC
Q 016458           47 RAPVSFGPTD-----LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAWVMTCAFSP  119 (389)
Q Consensus        47 ~~~~~~~~~~-----~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~~~~~~  119 (389)
                      .....|+...     ........+|.+.|.+++|+|++++|++|+.||+|++||+...  +....+..|...+.+++|+|
T Consensus        72 g~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~  151 (337)
T d1gxra_          72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP  151 (337)
T ss_dssp             SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT
T ss_pred             CEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccc
Confidence            3455665432     2233455689999999999999999999999999999998754  44566778888999999999


Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC
Q 016458          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG  199 (389)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  199 (389)
                      ++.++++++.|+.|++|++.++.       .......|...|.+++|++++ ..+++++.|+.|++||+++++.+..+  
T Consensus       152 ~~~~l~s~~~d~~i~~~~~~~~~-------~~~~~~~~~~~v~~l~~s~~~-~~~~~~~~d~~v~i~d~~~~~~~~~~--  221 (337)
T d1gxra_         152 DSKVCFSCCSDGNIAVWDLHNQT-------LVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQQH--  221 (337)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEE--
T ss_pred             ccccccccccccccccccccccc-------ccccccccccccccccccccc-cccccccccccccccccccceeeccc--
Confidence            99999999999999999998754       567778899999999999997 78999999999999999999988776  


Q ss_pred             cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEEC
Q 016458          200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI  279 (389)
Q Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  279 (389)
                          .+...|.+++|+| +++++++++.|+.+++||++.. . ......|...|.+++|+|++++|++++.||.|++||+
T Consensus       222 ----~~~~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~-~-~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~  294 (337)
T d1gxra_         222 ----DFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKP-D-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT  294 (337)
T ss_dssp             ----ECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSS-C-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ----ccccceEEEEEcc-cccccceecccccccccccccc-c-cccccccccccceEEECCCCCEEEEEeCCCeEEEEEC
Confidence                5778999999999 8889999999999999999876 3 3456779999999999999999999999999999999


Q ss_pred             CCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458          280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (389)
                      .+++.+.....      ...|.+++|+|++++|++|+.||.|+|||+
T Consensus       295 ~~~~~~~~~~~------~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         295 PYGASIFQSKE------SSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TTCCEEEEEEC------SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCCEEEEccC------CCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99988876543      235999999999999999999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-39  Score=276.04  Aligned_cols=284  Identities=18%  Similarity=0.281  Sum_probs=224.8

Q ss_pred             eeeecccccCcE-EEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Q 016458           59 CCRTLQGHAGKV-YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (389)
Q Consensus        59 ~~~~l~~h~~~v-~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (389)
                      ...+|+||.+.| +|++|  ++++||||+.||+|+|||+.+++.+..+.+|.++|.+++|+|+ .+|++|+.|+.|++|+
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred             CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence            356899999875 67766  5679999999999999999999999999999999999999985 5799999999999999


Q ss_pred             CCCCCCCC-----CC-C------------------------------------------------------cceeeeccc
Q 016458          138 LNSPTDKD-----GN-L------------------------------------------------------PVSRMLSGH  157 (389)
Q Consensus       138 ~~~~~~~~-----~~-~------------------------------------------------------~~~~~~~~~  157 (389)
                      ........     .. .                                                      ........|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  160 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred             ccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence            88743100     00 0                                                      000000011


Q ss_pred             ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCC
Q 016458          158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  237 (389)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  237 (389)
                      ...+  ..+.+++ .+++++..|+.|++||+.+++.....     ..+...+.++.++| .+..+++++.|+.|++||.+
T Consensus       161 ~~~v--~~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~  231 (355)
T d1nexb2         161 MASV--RTVSGHG-NIVVSGSYDNTLIVWDVAQMKCLYIL-----SGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLE  231 (355)
T ss_dssp             SSCE--EEEEEET-TEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETT
T ss_pred             cccc--ccccccc-ceeeeecccceeeeeecccccceeee-----eccccccccccccc-cceeeecccccceEEeeecc
Confidence            1111  1233444 68899999999999999999988887     67888899999999 88899999999999999999


Q ss_pred             CCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeE-EEeCCCCCEEEEEe
Q 016458          238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS-IAFSISGRLLFAGY  316 (389)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~  316 (389)
                      +. ..+..+.+|...|.+++++  +++|++++.||.|++||+++.........  ..     +.. ..++++++++++| 
T Consensus       232 ~~-~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~l~~g-  300 (355)
T d1nexb2         232 NG-ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH--TN-----LSAITTFYVSDNILVSG-  300 (355)
T ss_dssp             TC-CEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEEC--TT-----CCCCCEEEECSSEEEEE-
T ss_pred             cc-ccccccccccccccccccc--cceeeeeecccccccccccccceeccccc--CC-----ceEEEEEcCCCCEEEEE-
Confidence            87 7888899999999999986  46999999999999999998765544322  21     333 3567777777766 


Q ss_pred             cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          317 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      .||.|++||+++++.+....   .+|.++|.+++|+|+ .++++++.||.+.|
T Consensus       301 ~d~~i~vwd~~tg~~~~~~~---~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l  349 (355)
T d1nexb2         301 SENQFNIYNLRSGKLVHANI---LKDADQIWSVNFKGK-TLVAAVEKDGQSFL  349 (355)
T ss_dssp             ETTEEEEEETTTCCBCCSCT---TTTCSEEEEEEEETT-EEEEEEESSSCEEE
T ss_pred             eCCEEEEEECCCCCEEEEEe---cCCCCCEEEEEEcCC-eEEEEEECCCcEEE
Confidence            58899999999998875432   689999999999987 47888899999877

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-38  Score=265.36  Aligned_cols=293  Identities=16%  Similarity=0.164  Sum_probs=222.2

Q ss_pred             cEEEEEEcCCCCeEEEEecCC-cEEEEeCCCC--CeeEEEeeCC-CcEEEEEECC--CCcEEEEecCCCcEEEEeCCCCC
Q 016458           69 KVYSLDWTSERNRIVSASQDG-RLIVWNALTS--QKTHAIKLPC-AWVMTCAFSP--TGQSVACGGLDSVCSIFNLNSPT  142 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg-~v~iw~~~~~--~~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~dg~i~vw~~~~~~  142 (389)
                      .+++++|+|+++.|+.++.+. .|+.|+....  .....+.+|. ..|++++|+|  ++.+|++|+.||+|++||+....
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            467899999999999887654 3556665443  3355666664 6799999998  66899999999999999987643


Q ss_pred             CCCC-CCcceeeecccccceEEEEEeeCCCcEEEEee--CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458          143 DKDG-NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS--GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (389)
Q Consensus       143 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (389)
                      .... .......+..|.++|.+++|++++ .++++++  .++.+.+|+..+++.+..+     ..|...|.+++|+|.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~  172 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDSGNSLGEV-----SGHSQRINACHLKQSRP  172 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTTCCEEEEC-----CSCSSCEEEEEECSSSS
T ss_pred             ceeeeecccccccccccCcEEEEEECCCC-CccceeeccccceEEEEeecccccceee-----eeccccccccccccccc
Confidence            2110 111223355688899999999998 5555554  4778999999999988888     78999999999999666


Q ss_pred             cEEEEeeCCCceEEEeCCCCCcceeEE---eeeccceEEEEEecC-CCEEEEEecCCeEEEEECCCCceeeEeeccCCCC
Q 016458          220 RMFVSGSCDSTARLWDTRVASRAVRTF---HGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN  295 (389)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  295 (389)
                      .++++++.|+.+++||.... +.....   ..|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..+... 
T Consensus       173 ~~~~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~-  250 (325)
T d1pgua1         173 MRSMTVGDDGSVVFYQGPPF-KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP-  250 (325)
T ss_dssp             CEEEEEETTTEEEEEETTTB-EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBC-
T ss_pred             ceEEEeeccccccccccccc-ccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccc-
Confidence            67889999999999998865 333333   356778999999996 688999999999999999999988877654322 


Q ss_pred             CCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC-CCeEEeeeCCCeeEEeecce
Q 016458          296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-GSALCTGSWDTNLKVNLGFW  374 (389)
Q Consensus       296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~W  374 (389)
                      ....+.++.| |+|++|++++.|+.|+|||+.+++.+..+..  ..+...+..+++.+. +.+|++++.||.|++    |
T Consensus       251 v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~v----w  323 (325)
T d1pgua1         251 VQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTL--DKQQLGNQQVGVVATGNGRIISLSLDGTLNF----Y  323 (325)
T ss_dssp             CCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEEC--CTTCGGGCEEEEEEEETTEEEEEETTSCEEE----E
T ss_pred             cccceeeeec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEEe--cCCcccCeEEEEEECCCCEEEEEECCCEEEE----E
Confidence            2222344444 6899999999999999999999999888742  233333444444432 347899999999999    9


Q ss_pred             ec
Q 016458          375 RV  376 (389)
Q Consensus       375 ~~  376 (389)
                      |+
T Consensus       324 dl  325 (325)
T d1pgua1         324 EL  325 (325)
T ss_dssp             ET
T ss_pred             EC
Confidence            86

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.3e-38  Score=271.92  Aligned_cols=252  Identities=14%  Similarity=0.155  Sum_probs=206.1

Q ss_pred             CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458          108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (389)
Q Consensus       108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  187 (389)
                      ..++|+|++|+|++++||+|+.||.|++|++.+++     ......+.+|.++|.+++|+|++ ++|++++.|+.|++||
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~-----~~~~~~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd   79 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWT   79 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-----EEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC-----EEEEEEecCCCCCEEEEEECCCC-CEEEEEECCCeEEEEe
Confidence            34789999999999999999999999999997632     33567788999999999999997 7899999999999999


Q ss_pred             CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc---eeEEeeeccceEEEEEecCCCE
Q 016458          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA---VRTFHGHEGDVNTVKFFPDGNR  264 (389)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~  264 (389)
                      +.++.....+..   ..|...|.+++|+| +++.|++++.|+.+++|++......   ......|...|.+++|+|++++
T Consensus        80 ~~~~~~~~~~~~---~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  155 (371)
T d1k8kc_          80 LKGRTWKPTLVI---LRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL  155 (371)
T ss_dssp             EETTEEEEEEEC---CCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred             eccccccccccc---cccccccccccccc-ccccceeecccCcceeeeeecccccccccccccccccccccccccccccc
Confidence            988765544321   46788999999999 8899999999999999998765322   2233457889999999999999


Q ss_pred             EEEEecCCeEEEEECCCCceeeEe-------------eccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE
Q 016458          265 FGTGSDDGTCRLFDIRTGHQLQVY-------------YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  331 (389)
Q Consensus       265 l~~~~~dg~i~i~d~~~~~~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (389)
                      |++|+.||.|++||+.........             .......+...|.+++|+|++++|++++.||.|++||+.++..
T Consensus       156 l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~  235 (371)
T d1k8kc_         156 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA  235 (371)
T ss_dssp             EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred             eeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccc
Confidence            999999999999998654321110             0011123445699999999999999999999999999999999


Q ss_pred             EEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          332 VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      +..+    ..|..+|.+++|+|++++|++| .|+.+++    |....
T Consensus       236 ~~~~----~~~~~~v~s~~fs~d~~~la~g-~d~~~~~----~~~~~  273 (371)
T d1k8kc_         236 VATL----ASETLPLLAVTFITESSLVAAG-HDCFPVL----FTYDS  273 (371)
T ss_dssp             EEEE----ECSSCCEEEEEEEETTEEEEEE-TTSSCEE----EEEET
T ss_pred             eeee----ecccccceeeeecCCCCEEEEE-cCCceEE----EEeeC
Confidence            9988    7899999999999999877755 5777777    55543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-37  Score=261.09  Aligned_cols=266  Identities=21%  Similarity=0.330  Sum_probs=242.7

Q ss_pred             ccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCC
Q 016458           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT  120 (389)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~  120 (389)
                      .+.+.+.....|+....++.+++.+|.+.|.+++|+|++.++++++.++.+.+|+....+....+..+...+.++.|+|+
T Consensus        33 ~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (317)
T d1vyhc1          33 VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN  112 (317)
T ss_dssp             EEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS
T ss_pred             EEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCC
Confidence            34556778889999999999999999999999999999999999999999999999999988888899999999999999


Q ss_pred             CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc
Q 016458          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE  200 (389)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  200 (389)
                      ++.+++++.|+.+++|++.++.       ....+.+|...+.+++|++++ .+|++++.|+.|++|++.++.....+   
T Consensus       113 ~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~---  181 (317)
T d1vyhc1         113 GDHIVSASRDKTIKMWEVQTGY-------CVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAEL---  181 (317)
T ss_dssp             SSEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEE---
T ss_pred             CceEEeeccCcceeEeecccce-------eeeEEccCCCcceeeecccCC-CEEEEEeCCCeEEEEeeccceeeEEE---
Confidence            9999999999999999998755       667788899999999999997 78999999999999999999998888   


Q ss_pred             ccCCCCCCeeEEEeeCCC-------------------CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecC
Q 016458          201 FQSGHTADVLSVSISGSN-------------------SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD  261 (389)
Q Consensus       201 ~~~~~~~~v~~~~~~~~~-------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~  261 (389)
                        ..+...+.++.++|..                   +.++++++.|+.|++||++++ .++..+.+|...|.+++|+|+
T Consensus       182 --~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~  258 (317)
T d1vyhc1         182 --REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSG  258 (317)
T ss_dssp             --CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSS
T ss_pred             --ecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC-cEEEEEeCCCCCEEEEEECCC
Confidence              6788889999888732                   347899999999999999987 788899999999999999999


Q ss_pred             CCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458          262 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (389)
Q Consensus       262 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (389)
                      +++|++++.||.|++||+++++.+..+..+..     .|++++|+|++++|++|+.||.|+|||
T Consensus       259 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~-----~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         259 GKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-----FVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSCEEEEETTTEEEEECCTTSCCCEEEECCSS-----CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCEEEEEECCCeEEEEECCCCcEEEEEcCCCC-----CEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999998888865443     599999999999999999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.7e-38  Score=259.19  Aligned_cols=272  Identities=14%  Similarity=0.194  Sum_probs=213.5

Q ss_pred             ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (389)
                      -+++++|+||.++|++++|+|    |+||+.||+|++||+.++     ...|...|.++++++++ .+++++.|+++++|
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w   72 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN   72 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence            367889999999999999987    899999999999998754     35788899999998765 57889999999999


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  216 (389)
                      ++....              ....+.++.+.+++  .++..+.++.+.+|+..++.....+.      ....+  .++++
T Consensus        73 ~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~  128 (287)
T d1pgua2          73 GITKHE--------------FGSQPKVASANNDG--FTAVLTNDDDLLILQSFTGDIIKSVR------LNSPG--SAVSL  128 (287)
T ss_dssp             TEEEEE--------------CSSCEEEEEECSSS--EEEEEETTSEEEEEETTTCCEEEEEE------CSSCE--EEEEE
T ss_pred             cccccc--------------cccceeeeeeccCC--ceEEEeecccceeeeccceeeeeecc------cccee--eeeec
Confidence            975411              23456677888865  45555677789999999998887762      22333  34555


Q ss_pred             CCCcEEEEeeCC-CceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCC
Q 016458          217 SNSRMFVSGSCD-STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN  295 (389)
Q Consensus       217 ~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  295 (389)
                       ++..+++++.+ +.+++|++............|...+++++|+|++.+|++|+.||.|++||+.++........    .
T Consensus       129 -~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----~  203 (287)
T d1pgua2         129 -SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA----F  203 (287)
T ss_dssp             -CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC----C
T ss_pred             -cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccc----c
Confidence             45566666665 57999998765333333345778899999999999999999999999999998776543322    2


Q ss_pred             CCCCeeEEEeCCC----------CCEEEEEecCCcEEEEEccc-ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC
Q 016458          296 EIPHVTSIAFSIS----------GRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  364 (389)
Q Consensus       296 ~~~~i~~~~~~~~----------~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  364 (389)
                      +..+|.+++|+|.          +.++++|+.|+.|++||+.. .+.+..+    .+|...|++++|+|++ .|++++.|
T Consensus       204 h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~----~~h~~~V~~v~~~~~~-~l~s~g~D  278 (287)
T d1pgua2         204 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL----NAHKDGVNNLLWETPS-TLVSSGAD  278 (287)
T ss_dssp             CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET----TSSTTCEEEEEEEETT-EEEEEETT
T ss_pred             cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEe----CCCCCCeEEEEECCCC-EEEEEECC
Confidence            3446999999874          46899999999999999976 4455555    7899999999999986 58999999


Q ss_pred             CeeEEeecceec
Q 016458          365 TNLKVNLGFWRV  376 (389)
Q Consensus       365 g~i~i~~~~W~~  376 (389)
                      |.|++    |++
T Consensus       279 ~~v~i----W~i  286 (287)
T d1pgua2         279 ACIKR----WNV  286 (287)
T ss_dssp             SCEEE----EEE
T ss_pred             CeEEE----EEE
Confidence            99999    986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-36  Score=262.20  Aligned_cols=287  Identities=21%  Similarity=0.338  Sum_probs=219.6

Q ss_pred             EEEEecCCcEEEEeCCCCCee----EEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCC-----------CC
Q 016458           82 IVSASQDGRLIVWNALTSQKT----HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK-----------DG  146 (389)
Q Consensus        82 l~~~~~dg~v~iw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-----------~~  146 (389)
                      .+.+..++.+.+|+....+..    .....|.+.|++++|+|+|++|++|+ |+.|+||++.++...           ..
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~  109 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP  109 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccc
Confidence            345667778889987655432    23336899999999999999999986 899999999875410           00


Q ss_pred             CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee
Q 016458          147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS  226 (389)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  226 (389)
                      ..........|...|.+++|+|++ ++|++|+.||.|++||...++.....     ..|...|.++.+++ ++..+++++
T Consensus       110 ~~~~~~~~~~~~~~V~~l~~s~~~-~~l~s~~~dg~v~i~~~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~~~~~~  182 (388)
T d1erja_         110 ENLNTSSSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENRKIVMIL-----QGHEQDIYSLDYFP-SGDKLVSGS  182 (388)
T ss_dssp             ---------CCCCBEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEECT-TSSEEEEEE
T ss_pred             cccccccccCCCCCEEEEEECCCC-Ccceeccccccccccccccccccccc-----cccccccccccccc-ccccccccc
Confidence            001112234577889999999997 79999999999999999999998888     78999999999998 888999999


Q ss_pred             CCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEeeccC--CCCCCCCeeEE
Q 016458          227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--GENEIPHVTSI  303 (389)
Q Consensus       227 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~i~~~  303 (389)
                      .++.+++||.+.. ........+ ....++.+++ ++.+|++++.||.|++||..++.....+....  ...+...|.++
T Consensus       183 ~~~~i~~~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  260 (388)
T d1erja_         183 GDRTVRIWDLRTG-QCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV  260 (388)
T ss_dssp             TTSEEEEEETTTT-EEEEEEECS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred             cceeeeeeecccc-ccccccccc-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEE
Confidence            9999999999876 445444444 4455555555 88999999999999999999988777664322  12345579999


Q ss_pred             EeCCCCCEEEEEecCCcEEEEEcccceEEEeecC--------cCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458          304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS--------LQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR  375 (389)
Q Consensus       304 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~  375 (389)
                      +|+|++++|++++.||.|++||+.++........        ....|...|++++|+|++++|++|+.||.|++    ||
T Consensus       261 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~v----wd  336 (388)
T d1erja_         261 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF----WD  336 (388)
T ss_dssp             EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEE----EE
T ss_pred             EECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEE----EE
Confidence            9999999999999999999999876544322110        01468889999999999999999999999999    99


Q ss_pred             cccCccc
Q 016458          376 VQEGALS  382 (389)
Q Consensus       376 ~~~~~~~  382 (389)
                      +.++++.
T Consensus       337 ~~~~~~~  343 (388)
T d1erja_         337 KKSGNPL  343 (388)
T ss_dssp             TTTCCEE
T ss_pred             CCCCcEE
Confidence            9998764

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-36  Score=248.96  Aligned_cols=280  Identities=24%  Similarity=0.397  Sum_probs=223.5

Q ss_pred             ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (389)
                      ++.++.+.+|...|+|++|  ++++||||+.||+|+|||+.+++.+..+.+|...|.+++|  ++++|++|+.|+.|++|
T Consensus         5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~   80 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW   80 (293)
T ss_dssp             CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred             EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence            4555667789999999875  6889999999999999999999999999999999999987  57899999999999999


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  216 (389)
                      ++..+.       .......+....  ..+.+.. ..++++..++.+.+|+.............  ..|...+..+.+.+
T Consensus        81 ~~~~~~-------~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~  148 (293)
T d1p22a2          81 DVNTGE-------MLNTLIHHCEAV--LHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVL--VGHRAAVNVVDFDD  148 (293)
T ss_dssp             ESSSCC-------EEEEECCCCSCE--EEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEE--CCCSSCEEEEEEET
T ss_pred             cccccc-------cccccccccccc--ccccccc-cceeecccccceeEeeccccccccccccc--cccccccccceecc
Confidence            998754       223333222222  2333433 57999999999999999876543322111  56778888877764


Q ss_pred             CCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCC
Q 016458          217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE  296 (389)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  296 (389)
                         ..+++++.|+.|++||.++. +.+..+.++...+..+.++  +.++++++.||.|++||+++...+........   
T Consensus       149 ---~~~~~~s~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---  219 (293)
T d1p22a2         149 ---KYIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE---  219 (293)
T ss_dssp             ---TEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS---
T ss_pred             ---cccccccCCCceeeecCCCC-cEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce---
Confidence               57788999999999999987 7788888888888887775  56899999999999999999888877654332   


Q ss_pred             CCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc---------eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCee
Q 016458          297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA---------KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL  367 (389)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  367 (389)
                        .+.  .+++++.+|++|+.||.|++||+...         ..+..+    .+|.+.|++++|+  +.+|++|+.||+|
T Consensus       220 --~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~H~~~V~~v~~d--~~~l~s~s~Dg~i  289 (293)
T d1p22a2         220 --LVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL----VEHSGRVFRLQFD--EFQIVSSSHDDTI  289 (293)
T ss_dssp             --CEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE----CCCSSCCCCEEEC--SSCEEECCSSSEE
T ss_pred             --eee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEe----cCCCCCEEEEEEc--CCEEEEEecCCEE
Confidence              244  45678889999999999999997542         345566    7899999999995  6689999999999


Q ss_pred             EEeeccee
Q 016458          368 KVNLGFWR  375 (389)
Q Consensus       368 ~i~~~~W~  375 (389)
                      +|    ||
T Consensus       290 ~i----WD  293 (293)
T d1p22a2         290 LI----WD  293 (293)
T ss_dssp             EE----EC
T ss_pred             EE----eC
Confidence            99    97

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-37  Score=260.79  Aligned_cols=304  Identities=15%  Similarity=0.159  Sum_probs=222.2

Q ss_pred             ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEE---EeeCCCcEEEEEECCC-CcEEEEecCCCc
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA---IKLPCAWVMTCAFSPT-GQSVACGGLDSV  132 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~---~~~~~~~v~~~~~~~~-~~~l~~~~~dg~  132 (389)
                      ++.+..+++|++.|++|+|+|++++||+|+.||+|+|||+.++.....   ...|..+|.+++|+|+ +.+|++|+.||.
T Consensus         1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             CCeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            467788999999999999999999999999999999999987654333   3368899999999986 568999999999


Q ss_pred             EEEEeCCCCCCCCCCCcceeeeccccc-ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc-cCCCCCCee
Q 016458          133 CSIFNLNSPTDKDGNLPVSRMLSGHKG-YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF-QSGHTADVL  210 (389)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~  210 (389)
                      |++|++....       .......+.. ......+.++ ...+++++.++.+++||++.+.......... .........
T Consensus        81 v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~  152 (342)
T d1yfqa_          81 ILKVDLIGSP-------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK  152 (342)
T ss_dssp             EEEECSSSSS-------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred             eeeeeccccc-------ccccccccccccccccccccc-cccccccccccccceeeccccccceeeecccccccccceee
Confidence            9999998754       2333333333 3344444554 4789999999999999986543222221100 012223344


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEeCCCCCccee--EEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeE
Q 016458          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR--TFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQV  287 (389)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~  287 (389)
                      ...+.+ ....+++++.|+.|++||++.......  ....+...+.+..+.+ ++..+++++.||.+.+|+.........
T Consensus       153 ~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~  231 (342)
T d1yfqa_         153 IFTMDT-NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             EEEEEE-CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             eeeeec-cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceee
Confidence            556666 778899999999999999987633222  2233444556655554 778999999999999999865432211


Q ss_pred             ------ee----ccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCe
Q 016458          288 ------YY----QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA  357 (389)
Q Consensus       288 ------~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  357 (389)
                            ..    ......+...+++++|+|++++|++|+.||.|++||+.+++.+..+.   ..|  .+..++|+|++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~---~~~--~~~~~~~s~~~~~  306 (342)
T d1yfqa_         232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA---KFN--EDSVVKIACSDNI  306 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC---CCS--SSEEEEEEECSSE
T ss_pred             ccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec---CCC--CCEEEEEEeCCCE
Confidence                  11    11123345568999999999999999999999999999999988873   233  4556778888999


Q ss_pred             EEeeeCCCeeEEeecceeccc
Q 016458          358 LCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       358 l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      |++|+.|+.+++    |....
T Consensus       307 l~~a~sdd~~~~----~~~~~  323 (342)
T d1yfqa_         307 LCLATSDDTFKT----NAAID  323 (342)
T ss_dssp             EEEEEECTHHHH----CSSSC
T ss_pred             EEEEEcCCcEEE----eeeeC
Confidence            999999999988    77644

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.1e-37  Score=257.27  Aligned_cols=256  Identities=14%  Similarity=0.220  Sum_probs=208.0

Q ss_pred             eeeeeccccc-CcEEEEEEcC--CCCeEEEEecCCcEEEEeCCCCCeeE--------EEeeCCCcEEEEEECCCCcEEEE
Q 016458           58 VCCRTLQGHA-GKVYSLDWTS--ERNRIVSASQDGRLIVWNALTSQKTH--------AIKLPCAWVMTCAFSPTGQSVAC  126 (389)
Q Consensus        58 ~~~~~l~~h~-~~v~~~~~~~--~~~~l~~~~~dg~v~iw~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~  126 (389)
                      .....+.+|. ..|++++|+|  ++.+|++|+.||+|+|||+..++...        .+..+.++|.+++|+++++++++
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  132 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  132 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccce
Confidence            4455677875 5899999998  56799999999999999987654332        23457788999999999999887


Q ss_pred             ecC--CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC
Q 016458          127 GGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG  204 (389)
Q Consensus       127 ~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  204 (389)
                      ++.  ++.+.+|+.+++.       ....+.+|...|.+++|+|+++.++++++.|+.+++||....+........  ..
T Consensus       133 ~~~~~~~~~~~~~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~--~~  203 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSGN-------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH--HK  203 (325)
T ss_dssp             EECCSSCSEEEEETTTCC-------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS--SC
T ss_pred             eeccccceEEEEeecccc-------cceeeeecccccccccccccccceEEEeecccccccccccccccceecccc--cC
Confidence            754  6789999998754       677788999999999999998777889999999999999888776665322  56


Q ss_pred             CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEe---cCCCEEEEEecCCeEEEEECCC
Q 016458          205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF---PDGNRFGTGSDDGTCRLFDIRT  281 (389)
Q Consensus       205 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg~i~i~d~~~  281 (389)
                      +...|.+++|+|+.+.++++++.||.|++||+++. +.+..+.+|..++..+.|+   |++++|++++.|+.|++||+++
T Consensus       204 ~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         204 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT  282 (325)
T ss_dssp             TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred             CCCccEEeeeccccceeccccccccceeeeeeccc-cccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC
Confidence            77889999999977899999999999999999987 7788888888887766666   6899999999999999999999


Q ss_pred             CceeeEeeccCCCCCCCCeeEEEeCCC-CCEEEEEecCCcEEEEEc
Q 016458          282 GHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~  326 (389)
                      ++.+..+..+...   ..+..+++.+. +.+|++++.||.|++||+
T Consensus       283 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         283 SKCVQKWTLDKQQ---LGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TEEEEEEECCTTC---GGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CCEEEEEEecCCc---ccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            9988877654322   12333433332 347889999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.5e-36  Score=250.01  Aligned_cols=258  Identities=15%  Similarity=0.200  Sum_probs=205.2

Q ss_pred             CCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeee-cccccceEEEEEeeCCCcEEEEe
Q 016458           99 SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITS  177 (389)
Q Consensus        99 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~  177 (389)
                      |+..+.+.+|...|++++|+|++++|++|+.||.|++||+.++.       ....+ ..|...|.+++|+|++  .++++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~-------~~~~~~~~h~~~v~~v~~~~~g--~~~~~   72 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI-------SNRVFPDVHATMITGIKTTSKG--DLFTV   72 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEECSSCSCSSCEEEEEECTTS--CEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc-------EEEEEcCCCCCcEEEEEeeccc--eeecc
Confidence            45678889999999999999999999999999999999998754       33444 4789999999999987  36778


Q ss_pred             eCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEE
Q 016458          178 SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK  257 (389)
Q Consensus       178 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~  257 (389)
                      +.|+.+++|+..........  .....+...+.+++++| ++.+++++ .++.+.+|+...   ....  .....+.+++
T Consensus        73 ~~d~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~-~g~~~~~~-~~~~i~~~~~~~---~~~~--~~~~~~~~~~  143 (299)
T d1nr0a2          73 SWDDHLKVVPAGGSGVDSSK--AVANKLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYSHGK---LTEV--PISYNSSCVA  143 (299)
T ss_dssp             ETTTEEEEECSSSSSSCTTS--CCEEECSSCEEEEEECT-TSSCEEEE-ESSEEEEEETTE---EEEE--ECSSCEEEEE
T ss_pred             cceeeEEEeccCCccccccc--ccccccccccccccccc-cccccccc-cccccccccccc---cccc--cccccccccc
Confidence            88999999998654321111  11134667789999998 66666555 467899999552   2222  2345678999


Q ss_pred             EecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC
Q 016458          258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS  337 (389)
Q Consensus       258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  337 (389)
                      |+|++++|++++.||.|++||++++.........    +...|++++|+|++++|++++.||.|++||+.++........
T Consensus       144 ~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~  219 (299)
T d1nr0a2         144 LSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV----HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS  219 (299)
T ss_dssp             ECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEE----CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred             cccccccccccccccccccccccccccccccccc----cccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999887655433322    223599999999999999999999999999988776654432


Q ss_pred             cCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458          338 LQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       338 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      . ..|...|++++|+|++++|++|+.||.|++    ||+.+++..+
T Consensus       220 ~-~~h~~~v~~l~~s~~~~~l~sgs~dg~i~i----wd~~~~~~~~  260 (299)
T d1nr0a2         220 W-TFHTAKVACVSWSPDNVRLATGSLDNSVIV----WNMNKPSDHP  260 (299)
T ss_dssp             C-CCCSSCEEEEEECTTSSEEEEEETTSCEEE----EETTCTTSCC
T ss_pred             c-cccccccccccccccccceEEEcCCCEEEE----EECCCCCcce
Confidence            2 678999999999999999999999999999    9999876544

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-35  Score=254.72  Aligned_cols=296  Identities=16%  Similarity=0.192  Sum_probs=212.8

Q ss_pred             eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCe------eEEEeeCCCcEEEE------EECC-CCcEE
Q 016458           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK------THAIKLPCAWVMTC------AFSP-TGQSV  124 (389)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~------~~~~~~~~~~v~~~------~~~~-~~~~l  124 (389)
                      ......++|.+.|.++++++  ++|+|++.|++|+|||..+...      ......+...+..+      ..+. ++.++
T Consensus         5 ~~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (393)
T d1sq9a_           5 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   82 (393)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             eeeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEE
Confidence            34567789999999999875  5999999999999999766532      22223333333222      2222 34567


Q ss_pred             EEecCCCcEEEEeCCCCCCCCCCCcce---eeecccccceEEEEEeeCC----CcEEEEeeCCCeEEEEeCCCCe-----
Q 016458          125 ACGGLDSVCSIFNLNSPTDKDGNLPVS---RMLSGHKGYVSCCQYVPDE----DTHLITSSGDQTCVLWDITTGL-----  192 (389)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~-----  192 (389)
                      ++++.||.|++|++.............   .....+...+..++|.++.    ..++++++.||.+++|++....     
T Consensus        83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            899999999999987643211110000   0112345667788887764    2678999999999999975321     


Q ss_pred             --------eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCccee------EEeeeccceEEEEE
Q 016458          193 --------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR------TFHGHEGDVNTVKF  258 (389)
Q Consensus       193 --------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------~~~~~~~~i~~~~~  258 (389)
                              ............+...+.+++|+| ++ +|++|+.||.|++||+.+. +++.      .+.+|..+|.+++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~~-~~~~~~~~~~~l~~h~~~V~~l~~  239 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTL-RPLYNFESQHSMINNSNSIRSVKF  239 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTT-EEEEEEECCC---CCCCCEEEEEE
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECC-CC-EEEEEeCCCcEEEEeeccc-ccccccccccccccccceEEEccc
Confidence                    000111111235566789999998 54 8899999999999999876 4433      34568899999999


Q ss_pred             ecCCCEEEEEecCC---eEEEEECCCCceeeEeeccC--------CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          259 FPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       259 ~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      +|++++|++|+.|+   .|++||+.+++.+..+....        ...|...|++++|+|++++|++|+.|+.|++||+.
T Consensus       240 spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             ccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC
Confidence            99999999999887   49999999998887764321        12456679999999999999999999999999999


Q ss_pred             cceEEEeecCcCCCCCCCee----EEEECCCCCeEEeee
Q 016458          328 LAKVVLNLGSLQNSHEGRIT----CLGLSADGSALCTGS  362 (389)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~l~~~~  362 (389)
                      +++.+.++    .+|.+.|.    .++|++++..+++++
T Consensus       320 ~g~~~~~l----~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         320 TKERITTL----NMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             TTEEEEEE----ECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             CCCEEEEE----CCcCCcccCCccEEEECCCCCEEEEcc
Confidence            99999999    68877665    467777777665544

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.3e-35  Score=247.68  Aligned_cols=302  Identities=19%  Similarity=0.338  Sum_probs=239.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhcccc--------------------------cccccccCCCCCcc
Q 016458            3 SSVSELKERHAAAIETVNSLRERLK-----QKRQQLLDVD--------------------------VAGYSRSQGRAPVS   51 (389)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--------------------------~~~~~~~~~~~~~~   51 (389)
                      +.+++|+++.+.+++++++.++...     .....+....                          ......+.+.....
T Consensus         2 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~i   81 (340)
T d1tbga_           2 SELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLII   81 (340)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHTTTSCCCCCCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhhccCcccccceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceee
Confidence            3578888888888888877664422     1111111110                          00112223455668


Q ss_pred             cCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC----eeEEEeeCCCcEEEEEECCCCcEEEEe
Q 016458           52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ----KTHAIKLPCAWVMTCAFSPTGQSVACG  127 (389)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~  127 (389)
                      |+.........+.+|..+|.+++|+|+++++++|+.|+.+++|+.....    ....+..|......... ..+..+...
T Consensus        82 Wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (340)
T d1tbga_          82 WDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTS  160 (340)
T ss_dssp             EETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEE-EETTEEEEE
T ss_pred             eecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccc-ccccccccc
Confidence            8888899999999999999999999999999999999999999976543    34455566665554444 445667777


Q ss_pred             cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458          128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (389)
Q Consensus       128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  207 (389)
                      ..+.....+......       .......+...+....+.+.+ .++++++.|+.|++||++++.....+     ..|..
T Consensus       161 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~i~d~~~~~~~~~~-----~~h~~  227 (340)
T d1tbga_         161 SGDTTCALWDIETGQ-------QTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTF-----TGHES  227 (340)
T ss_dssp             ETTTEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEEEE-----CCCSS
T ss_pred             ccccccccccccccc-------ccccccccceeEeeecccccc-ceeEEeecCceEEEEECCCCcEEEEE-----eCCCC
Confidence            788888888877633       445556677788888888876 78999999999999999999999988     78999


Q ss_pred             CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE--eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCcee
Q 016458          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL  285 (389)
Q Consensus       208 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  285 (389)
                      .|.+++|+| ++++|++|+.||.|++||++.. .....+  ..+...|.+++|+|++++|++|+.||.|++||+.+++.+
T Consensus       228 ~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~  305 (340)
T d1tbga_         228 DINAICFFP-NGNAFATGSDDATCRLFDLRAD-QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA  305 (340)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred             CeEEEEECC-CCCEEEEEeCCCeEEEEeeccc-ccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEE
Confidence            999999999 8899999999999999999976 444444  345677999999999999999999999999999999998


Q ss_pred             eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (389)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (389)
                      ..+..+.     .+|++++|+|++++|++|+.||.|+|||
T Consensus       306 ~~~~~H~-----~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         306 GVLAGHD-----NRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECCCS-----SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEcCCC-----CCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            8876543     3599999999999999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-31  Score=225.78  Aligned_cols=265  Identities=28%  Similarity=0.429  Sum_probs=208.6

Q ss_pred             ccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEE-----
Q 016458           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC-----  115 (389)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~-----  115 (389)
                      .+.+.+.....|+....+++++|.+|.++|.+++|+|+  +|++|+.|+.+++|+............+...+...     
T Consensus        31 ~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (342)
T d2ovrb2          31 VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK  108 (342)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred             EEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccc
Confidence            34566778889999999999999999999999999975  99999999999999987654443333222222111     


Q ss_pred             ---------------------------------EECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceE
Q 016458          116 ---------------------------------AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVS  162 (389)
Q Consensus       116 ---------------------------------~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~  162 (389)
                                                       ...+....+++++.|+.|++|+.....       ....+.+|...+.
T Consensus       109 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~-------~~~~~~~~~~~~~  181 (342)
T d2ovrb2         109 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-------CLHTLQGHTNRVY  181 (342)
T ss_dssp             EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-------EEEEECCCSSCEE
T ss_pred             cccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccce-------eeEEEcCcccccc
Confidence                                             122334567777888888888876543       4566777777666


Q ss_pred             EEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc
Q 016458          163 CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA  242 (389)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  242 (389)
                      .+.+  ++ .++++++.||.|++||++.+..+..+     ..|...+.++.+++   ++|++++.||.|++||+... +.
T Consensus       182 ~~~~--~~-~~l~s~~~dg~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~-~~  249 (342)
T d2ovrb2         182 SLQF--DG-IHVVSGSLDTSIRVWDVETGNCIHTL-----TGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTG-QC  249 (342)
T ss_dssp             EEEE--CS-SEEEEEETTSCEEEEETTTCCEEEEE-----CCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTC-CE
T ss_pred             cccC--CC-CEEEEEeCCCeEEEeecccceeeeEe-----cccccceeEEecCC---CEEEEEcCCCEEEEEecccc-cc
Confidence            5554  44 68999999999999999999998888     78888899888865   58999999999999999877 55


Q ss_pred             eeEEee---eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC
Q 016458          243 VRTFHG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG  319 (389)
Q Consensus       243 ~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (389)
                      ...+..   |...+.++.+  +++++++|+.||.|++||+++++.+..+.......+...|++++|+|++.+|++|+.||
T Consensus       250 ~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG  327 (342)
T d2ovrb2         250 LQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG  327 (342)
T ss_dssp             EEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             cccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            555554   4556666666  46699999999999999999999988887655555666799999999999999999998


Q ss_pred             c----EEEEEccc
Q 016458          320 D----CYVWDTLL  328 (389)
Q Consensus       320 ~----i~i~d~~~  328 (389)
                      +    |++||++.
T Consensus       328 t~~~~l~~~Df~~  340 (342)
T d2ovrb2         328 TEETKLLVLDFDV  340 (342)
T ss_dssp             SSCCEEEEEECCC
T ss_pred             CCeeEEEEEeCCC
Confidence            5    99999863

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-32  Score=234.53  Aligned_cols=272  Identities=18%  Similarity=0.194  Sum_probs=195.1

Q ss_pred             EEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE---eeC---CCcEEEE
Q 016458          103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY---VPD---EDTHLIT  176 (389)
Q Consensus       103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~---~~~~l~~  176 (389)
                      ...++|...|.++++++  +++++++.|+.|++||........ ..........|...+..+..   .+.   ...++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN-PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC-GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCc-ccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            34468999999999864  689999999999999987644211 11122223334433332222   121   1246789


Q ss_pred             eeCCCeEEEEeCCCCeeEE-----EecCcccCCCCCCeeEEEeeCCC----CcEEEEeeCCCceEEEeCCCCCc------
Q 016458          177 SSGDQTCVLWDITTGLRTS-----VFGGEFQSGHTADVLSVSISGSN----SRMFVSGSCDSTARLWDTRVASR------  241 (389)
Q Consensus       177 ~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~------  241 (389)
                      ++.||.|++|++.......     .........+...+..+++.+..    ..++++++.||.+++||+.....      
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            9999999999976542211     11111112344567778887632    46889999999999999753311      


Q ss_pred             ----ceeE-------EeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC-CCCCCCCeeEEEeCCCC
Q 016458          242 ----AVRT-------FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-GENEIPHVTSIAFSISG  309 (389)
Q Consensus       242 ----~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~  309 (389)
                          ....       ...+...+.+++|+|++ +|++|+.||.|++||+.+++.+..+.... ...|..+|++++|+|+|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg  243 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG  243 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred             eeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc
Confidence                0111       11234558899999987 89999999999999999998877765432 23456679999999999


Q ss_pred             CEEEEEecCCc---EEEEEcccceEEEeecC---------cCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458          310 RLLFAGYSNGD---CYVWDTLLAKVVLNLGS---------LQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ  377 (389)
Q Consensus       310 ~~l~~~~~dg~---i~i~d~~~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~  377 (389)
                      ++|++|+.|+.   |++||+.+++.+..+..         ...+|.+.|++++|+||+++|++|+.|++|+|    ||+.
T Consensus       244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~v----Wd~~  319 (393)
T d1sq9a_         244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF----WDVK  319 (393)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE----EETT
T ss_pred             ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEE----EECC
Confidence            99999999874   89999999988877632         11479999999999999999999999999999    9999


Q ss_pred             cCccc
Q 016458          378 EGALS  382 (389)
Q Consensus       378 ~~~~~  382 (389)
                      +|++.
T Consensus       320 ~g~~~  324 (393)
T d1sq9a_         320 TKERI  324 (393)
T ss_dssp             TTEEE
T ss_pred             CCCEE
Confidence            99765

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-31  Score=225.18  Aligned_cols=248  Identities=23%  Similarity=0.334  Sum_probs=199.7

Q ss_pred             eEEEeeCCCcE-EEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC
Q 016458          102 THAIKLPCAWV-MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD  180 (389)
Q Consensus       102 ~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  180 (389)
                      ..++++|...| +|++|  ++++|++|+.||.|+|||+.+++       ....+.+|.+.|.+++|+|+  .+|++|+.|
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~-------~~~~l~~H~~~V~~l~~s~~--~~l~s~s~D   73 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-------FLLQLSGHDGGVWALKYAHG--GILVSGSTD   73 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTE-------EEEEEECCSSCEEEEEEETT--TEEEEEETT
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCc-------EEEEEECCCCCEEEEEEcCC--CEEEEEecc
Confidence            45688998775 55555  68899999999999999998754       67888999999999999985  489999999


Q ss_pred             CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc------------------
Q 016458          181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA------------------  242 (389)
Q Consensus       181 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------------  242 (389)
                      +.|++|++...........   ..+........+.+ ++.++++++.|+.|++||++.....                  
T Consensus        74 ~~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (355)
T d1nexb2          74 RTVRVWDIKKGCCTHVFEG---HNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE  149 (355)
T ss_dssp             CCEEEEETTTTEEEEEECC---CSSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTT
T ss_pred             ccccccccccccccccccc---cccccccccccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceecccc
Confidence            9999999999888776632   22333345556666 7889999999999999998765211                  


Q ss_pred             ----eeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC
Q 016458          243 ----VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN  318 (389)
Q Consensus       243 ----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (389)
                          ......|...+  ..+.+++++++++..|+.|++||+++++.+........     .+.++.|+|+++++++++.|
T Consensus       150 ~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d  222 (355)
T d1nexb2         150 NPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD-----RIYSTIYDHERKRCISASMD  222 (355)
T ss_dssp             CTTEEEEEECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEEETTTTEEEEEETT
T ss_pred             ccceeeeeeeccccc--cccccccceeeeecccceeeeeecccccceeeeecccc-----ccccccccccceeeeccccc
Confidence                11112223333  34556789999999999999999999888776654443     48999999999999999999


Q ss_pred             CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcc
Q 016458          319 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~  381 (389)
                      +.|++||+.++..+..+    .+|...|.+++|++  ++|++|+.||.|++    ||+.++..
T Consensus       223 ~~i~i~d~~~~~~~~~~----~~h~~~v~~~~~~~--~~l~~~~~dg~i~i----wd~~~~~~  275 (355)
T d1nexb2         223 TTIRIWDLENGELMYTL----QGHTALVGLLRLSD--KFLVSAAADGSIRG----WDANDYSR  275 (355)
T ss_dssp             SCEEEEETTTCCEEEEE----CCCSSCCCEEEECS--SEEEEECTTSEEEE----EETTTCCE
T ss_pred             ceEEeeecccccccccc----cccccccccccccc--ceeeeeeccccccc----ccccccce
Confidence            99999999999999998    78999999999974  68999999999999    99987754

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=4.7e-33  Score=237.66  Aligned_cols=280  Identities=14%  Similarity=0.068  Sum_probs=214.2

Q ss_pred             EEEEEcC-CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCC--cEEEEeCCCCCCCCCC
Q 016458           71 YSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS--VCSIFNLNSPTDKDGN  147 (389)
Q Consensus        71 ~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~  147 (389)
                      ..-.||| ||+++|+++. |.|++||...+.....  .|...|.+++|+|+|+.|++++.+.  .|++||..++.     
T Consensus         6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-----   77 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-----   77 (360)
T ss_dssp             GEEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-----
T ss_pred             hcccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-----
Confidence            3567999 9999998865 7999999988776553  5788999999999999998776543  79999998754     


Q ss_pred             CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-
Q 016458          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-  226 (389)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-  226 (389)
                         ...+..|...+.+++|+|++ ++|++++.++.+++|+..++.....+     ..+...+.+++|+| ++++|+.+. 
T Consensus        78 ---~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~sp-dg~~la~~~~  147 (360)
T d1k32a3          78 ---AEKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIE-----RSREAMITDFTISD-NSRFIAYGFP  147 (360)
T ss_dssp             ---EEECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEE-----ECSSSCCCCEEECT-TSCEEEEEEE
T ss_pred             ---EEEeeCCCceEEeeeecccc-cccceeccccccccccccccceeeee-----ecccccccchhhcc-ceeeeeeecc
Confidence               45677899999999999998 78999999999999999999988887     67888899999999 777777543 


Q ss_pred             ---------CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCcee-------eEeec
Q 016458          227 ---------CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL-------QVYYQ  290 (389)
Q Consensus       227 ---------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~  290 (389)
                               .++.+++||+...  ....+..+...+..++|+|+|++|++++.++.+.+||.......       .....
T Consensus       148 ~~~~~~~~~~~~~~~v~d~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~  225 (360)
T d1k32a3         148 LKHGETDGYVMQAIHVYDMEGR--KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL  225 (360)
T ss_dssp             ECSSTTCSCCEEEEEEEETTTT--EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEES
T ss_pred             ccccceeeccccceeeeccccC--ceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEec
Confidence                     3456899999865  33445557778899999999999999999999999987543221       11110


Q ss_pred             cCCC-------------------------------CCCCCeeEEEeCCCCC-------------EEEEEecCCcEEEEEc
Q 016458          291 QHGE-------------------------------NEIPHVTSIAFSISGR-------------LLFAGYSNGDCYVWDT  326 (389)
Q Consensus       291 ~~~~-------------------------------~~~~~i~~~~~~~~~~-------------~l~~~~~dg~i~i~d~  326 (389)
                      ....                               ........+...+++.             ++++++.++.|++||+
T Consensus       226 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  305 (360)
T d1k32a3         226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV  305 (360)
T ss_dssp             STTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEET
T ss_pred             ccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEEC
Confidence            0000                               0001122333333322             3444556788999999


Q ss_pred             ccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          327 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      .+++..        .|.+.|.+++|+|||++|++++.||.|++    |++++|+..
T Consensus       306 ~~~~~~--------~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v----~d~~~~~~~  349 (360)
T d1k32a3         306 KTRKVT--------EVKNNLTDLRLSADRKTVMVRKDDGKIYT----FPLEKPEDE  349 (360)
T ss_dssp             TTCCEE--------EEEEEEEEEEECTTSCEEEEEETTSCEEE----EESSCTTSC
T ss_pred             CCCeEE--------EecCCcCEEEECCCCCEEEEEECCCeEEE----EECCCCCcc
Confidence            887643        23456899999999999999999999999    999988654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.8e-32  Score=227.11  Aligned_cols=266  Identities=10%  Similarity=0.086  Sum_probs=197.5

Q ss_pred             eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC
Q 016458          101 KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD  180 (389)
Q Consensus       101 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  180 (389)
                      .+...+.|.+.|++++|+|++++|++|+.||+|+|||+....    .........+|..+|.+++|+|+++.+|++|+.|
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~----~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d   78 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA----KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ   78 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT----TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCC----cceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc
Confidence            455567899999999999999999999999999999997643    1112333446999999999999877889999999


Q ss_pred             CeEEEEeCCCCeeEEEecCcccCCCCCC-eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee-----eccceE
Q 016458          181 QTCVLWDITTGLRTSVFGGEFQSGHTAD-VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-----HEGDVN  254 (389)
Q Consensus       181 g~i~iwd~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~i~  254 (389)
                      |.|++|++.........     ..+... .....+.+ +...+++++.++.+++||++...........     ......
T Consensus        79 ~~v~~w~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~  152 (342)
T d1yfqa_          79 GEILKVDLIGSPSFQAL-----TNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK  152 (342)
T ss_dssp             SCEEEECSSSSSSEEEC-----BSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred             cceeeeecccccccccc-----ccccccccccccccc-ccccccccccccccceeeccccccceeeecccccccccceee
Confidence            99999999988777766     233333 33444444 7889999999999999998765322222211     122345


Q ss_pred             EEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEE-eCCCCCEEEEEecCCcEEEEEcccceEEE
Q 016458          255 TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA-FSISGRLLFAGYSNGDCYVWDTLLAKVVL  333 (389)
Q Consensus       255 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  333 (389)
                      ...+.+.+..+++++.|+.|++||++..............  ...+.+.. +..++..+++++.||.+.+|+........
T Consensus       153 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~  230 (342)
T d1yfqa_         153 IFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL--KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY  230 (342)
T ss_dssp             EEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSC--SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST
T ss_pred             eeeeeccCCceeeecCCCcEEEEecccCcccceeeeeccc--ccceeeeEeecCCCCEEEeecCCCeEEEEEecCCccee
Confidence            6677888999999999999999999877655443332221  11244444 44567899999999999999976432211


Q ss_pred             ---------ee--cCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          334 ---------NL--GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       334 ---------~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                               ..  ......|...|++++|+|++.+|++|+.||.|++    ||+.+++..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~v----WD~~~~~~l  286 (342)
T d1yfqa_         231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC----WNLQTRKKI  286 (342)
T ss_dssp             TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEE----EETTTTEEE
T ss_pred             eccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEE----EECCCCcEE
Confidence                     11  1112456778999999999999999999999999    999998654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.9e-29  Score=206.46  Aligned_cols=257  Identities=24%  Similarity=0.453  Sum_probs=207.8

Q ss_pred             cccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECC
Q 016458           40 GYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP  119 (389)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~  119 (389)
                      ..+.+.+.....|+....++.++|.+|.++|++++|  ++++|++|+.||.|++|++..+..............  .+.+
T Consensus        28 l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~  103 (293)
T d1p22a2          28 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL--HLRF  103 (293)
T ss_dssp             EEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE--EEEC
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccc--cccc
Confidence            345667788889999999999999999999999988  467999999999999999999888777665554333  3455


Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC
Q 016458          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG  199 (389)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  199 (389)
                      ....++++..++.+.+|+.....    .......+..|...+.++.+.+   ..+++++.|+.|++||+.+++.+..+  
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~--  174 (293)
T d1p22a2         104 NNGMMVTCSKDRSIAVWDMASPT----DITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTL--  174 (293)
T ss_dssp             CTTEEEEEETTSCEEEEECSSSS----CCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEE--
T ss_pred             cccceeecccccceeEeeccccc----cccccccccccccccccceecc---cccccccCCCceeeecCCCCcEEEEE--
Confidence            66788999999999999988744    2234555677888888877765   46889999999999999999998888  


Q ss_pred             cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEEC
Q 016458          200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI  279 (389)
Q Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  279 (389)
                         ..+...+..+.+++   ..+++++.||.|++||+++. ..+....+|...+..  +++++.+|++++.||.|++||+
T Consensus       175 ---~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~  245 (293)
T d1p22a2         175 ---NGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDL  245 (293)
T ss_dssp             ---ECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEH
T ss_pred             ---cccccccccccCCC---CeEEEecCCCEEEEEecccc-eeeeeecccceeeee--ccccceEEEEEcCCCEEEEEEC
Confidence               67777888887764   58999999999999999987 777788888887765  4567889999999999999997


Q ss_pred             CCCc---------eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458          280 RTGH---------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (389)
Q Consensus       280 ~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (389)
                      ....         .+..+..     |...|++++|+  +++|++|+.||.|++||
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~-----H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         246 VAALDPRAPAGTLCLRTLVE-----HSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             HHHTSTTSCTTTTEEEEECC-----CSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             CCCccccccCCceeeEEecC-----CCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            5432         2333332     33458999984  67899999999999997

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.97  E-value=2.2e-27  Score=196.99  Aligned_cols=269  Identities=15%  Similarity=0.183  Sum_probs=212.7

Q ss_pred             EEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE-EecCCCcEEEEeCCCCCCCCCCCcceeeecccccc
Q 016458           82 IVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY  160 (389)
Q Consensus        82 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  160 (389)
                      .++++.|++|.+||+.+++.+.++.... .+..++|+|+|++|+ +++.++.|++||+.++.       ....+..+. .
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~-~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~-------~~~~~~~~~-~   75 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-------VIATVPAGS-S   75 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-------EEEEEECSS-S
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCC-CceEEEEeCCCCEEEEEECCCCEEEEEECCCCc-------eeeeeeccc-c
Confidence            3466789999999999999999888664 478999999999874 66778999999998754       455555554 4


Q ss_pred             eEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC
Q 016458          161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS  240 (389)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  240 (389)
                      +..+.|++++...++++..++.+.+|+..+++....+      .+.....++.++|+...+++++..++.+.+|+..+. 
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~-  148 (301)
T d1l0qa2          76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-  148 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-
T ss_pred             ccccccccccccccccccccceeeecccccceeeeec------cccccceEEEeecCCCeeeeeeccccceeeeecccc-
Confidence            6789999998777778888999999999999888877      344567889999955555667777889999999876 


Q ss_pred             cceeEEeeeccceEEEEEecCCCEEEEEecC-CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec--
Q 016458          241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS--  317 (389)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--  317 (389)
                      .....+. +...+..++++|++..+++++.+ +.+.+|+..............      .+..++|+++++.++++..  
T Consensus       149 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~v~~~~~  221 (301)
T d1l0qa2         149 AVINTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA------APSGIAVNPEGTKAYVTNVDK  221 (301)
T ss_dssp             EEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS------EEEEEEECTTSSEEEEEEECS
T ss_pred             ceeeecc-cCCCceEEEeeccccceeeecccccccccccccceeeeecccccC------Ccceeeccccccccccccccc
Confidence            5555554 44567899999999988877755 667788877766555544332      2688999999998876654  


Q ss_pred             -CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeE-EeeeCCCeeEEeecceecccCccc
Q 016458          318 -NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL-CTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       318 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                       ++.|.+||+.+++....+.     +...+.+++|+|||++| ++++.|+.|++    ||++++++.
T Consensus       222 ~~~~v~v~D~~t~~~~~~~~-----~~~~~~~va~spdg~~l~va~~~~~~i~v----~D~~t~~~~  279 (301)
T d1l0qa2         222 YFNTVSMIDTGTNKITARIP-----VGPDPAGIAVTPDGKKVYVALSFCNTVSV----IDTATNTIT  279 (301)
T ss_dssp             SCCEEEEEETTTTEEEEEEE-----CCSSEEEEEECTTSSEEEEEETTTTEEEE----EETTTTEEE
T ss_pred             eeeeeeeeecCCCeEEEEEc-----CCCCEEEEEEeCCCCEEEEEECCCCeEEE----EECCCCeEE
Confidence             3579999999999988872     33568999999999987 57778999999    999999865

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=2.4e-28  Score=212.90  Aligned_cols=295  Identities=10%  Similarity=-0.001  Sum_probs=209.5

Q ss_pred             eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccc
Q 016458           81 RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY  160 (389)
Q Consensus        81 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  160 (389)
                      ++++++.||+|+|||+.+++.+..+..+. .+..++|+|||+++++++.|+.|++||+.+++..  .........+|.+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~--~~~~i~~~~~~~~~  110 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT--KVAEIKIGIEARSV  110 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE--EEEEEECCSEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCcee--EEEEEeCCCCCcce
Confidence            56788899999999999999999999875 5899999999999999999999999999875411  00011223466777


Q ss_pred             eEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCccc------CCCCCCeeEEEeeCCCCcEEEEeeCCCceEEE
Q 016458          161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ------SGHTADVLSVSISGSNSRMFVSGSCDSTARLW  234 (389)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  234 (389)
                      +.++.|+|+|..+++++..++.+++||..++...........      ..+......+..+++...++++....+.+.++
T Consensus       111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~  190 (426)
T d1hzua2         111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV  190 (426)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            788888999865567777899999999999988877632110      11223344555565333333334444566666


Q ss_pred             eCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceeeEeeccCC--------------------
Q 016458          235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHG--------------------  293 (389)
Q Consensus       235 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~--------------------  293 (389)
                      +............++...+..+.|+|++++++++. .+..+.+++..+++..........                    
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (426)
T d1hzua2         191 NYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWST  270 (426)
T ss_dssp             ECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEE
T ss_pred             EeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEe
Confidence            66555333444556778899999999999887766 556688888877655433321100                    


Q ss_pred             -----------------------------CCCCCCeeEEEeCCCCCEEEE-------EecCCcEEEEEcccceEEEeecC
Q 016458          294 -----------------------------ENEIPHVTSIAFSISGRLLFA-------GYSNGDCYVWDTLLAKVVLNLGS  337 (389)
Q Consensus       294 -----------------------------~~~~~~i~~~~~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~~  337 (389)
                                                   ..+...+..++|+|++++|++       +..+++|+|||+.+++...++..
T Consensus       271 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~  350 (426)
T d1hzua2         271 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP  350 (426)
T ss_dssp             ECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC
T ss_pred             ccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEec
Confidence                                         012345788999999999995       44578999999998876554421


Q ss_pred             -----cCCCCCCCeeEEEECCCCCeEEe-----eeCCCeeEEeecceecccCccc
Q 016458          338 -----LQNSHEGRITCLGLSADGSALCT-----GSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       338 -----~~~~~~~~v~~~~~~~~~~~l~~-----~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                           ....|...|.+++|||||++++.     ++.+|.|+|    ||..++++.
T Consensus       351 ~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v----~D~~T~k~~  401 (426)
T d1hzua2         351 IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV----VDDKTLKLK  401 (426)
T ss_dssp             HHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEE----EETTTTEEE
T ss_pred             cchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEE----EECCCCeEE
Confidence                 01356677999999999997743     246889999    999999864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.1e-28  Score=201.97  Aligned_cols=252  Identities=13%  Similarity=0.104  Sum_probs=189.6

Q ss_pred             cccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECC
Q 016458           40 GYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP  119 (389)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~  119 (389)
                      .++.+.+.....|+....     ..+|.+.|.++++++++ .+++++.|+++++|+....       .....+.++++++
T Consensus        24 l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~-------~~~~~~~~~~~~~   90 (287)
T d1pgua2          24 LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH-------EFGSQPKVASANN   90 (287)
T ss_dssp             TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE-------ECSSCEEEEEECS
T ss_pred             EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeecccccccccccc-------ccccceeeeeecc
Confidence            345566777788887653     46899999999999765 6899999999999986532       2234577889999


Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC-CeEEEEeCCCCeeEEEec
Q 016458          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-QTCVLWDITTGLRTSVFG  198 (389)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~  198 (389)
                      ++..++++. ++.+.+|+...+.       ....+..+ ..+  .++++++ ..+++++.+ +.+++|++........+.
T Consensus        91 ~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~-~~~--~~~~~~~-~~~~v~~~~~~~v~~~~~~~~~~~~~~~  158 (287)
T d1pgua2          91 DGFTAVLTN-DDDLLILQSFTGD-------IIKSVRLN-SPG--SAVSLSQ-NYVAVGLEEGNTIQVFKLSDLEVSFDLK  158 (287)
T ss_dssp             SSEEEEEET-TSEEEEEETTTCC-------EEEEEECS-SCE--EEEEECS-SEEEEEETTTSCEEEEETTEEEEEEECS
T ss_pred             CCceEEEee-cccceeeecccee-------eeeecccc-cee--eeeeccC-cceeeeccccceeeeeeccccceeeeee
Confidence            888877765 5567888877643       33333322 233  4566766 456666655 579999998766555542


Q ss_pred             CcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecC----------CCEEEEE
Q 016458          199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD----------GNRFGTG  268 (389)
Q Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~l~~~  268 (389)
                          ..+...+.+++|+| ++.+|++|+.||.|++||+.+.......+..|..+|.+++|+|.          +.+|++|
T Consensus       159 ----~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sg  233 (287)
T d1pgua2         159 ----TPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG  233 (287)
T ss_dssp             ----SCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEE
T ss_pred             ----eccCCceeEEEecc-CccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEee
Confidence                45778899999999 88999999999999999998774444456789999999999874          5689999


Q ss_pred             ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458          269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       269 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (389)
                      +.|+.|++||++.+........    .|...|++++|+|++ .|++++.||.|++|++
T Consensus       234 s~D~~i~iw~~~~~~~~~~~~~----~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         234 SLDTNIFIYSVKRPMKIIKALN----AHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ETTSCEEEEESSCTTCCEEETT----SSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             cCCCeEEEEECCCCCeEEEEeC----CCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            9999999999987544333322    233469999999986 5888999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=3.3e-28  Score=207.31  Aligned_cols=261  Identities=8%  Similarity=0.044  Sum_probs=197.6

Q ss_pred             CCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCC--cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE
Q 016458           48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA  125 (389)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  125 (389)
                      ....|+.......+.  +|...|.+++|+|||++|++++.+.  .|++||..+++.. .+..|...+.+++|+|++++|+
T Consensus        25 ~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~  101 (360)
T d1k32a3          25 QAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAV  101 (360)
T ss_dssp             EEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEE
T ss_pred             eEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccc
Confidence            345666666555543  7999999999999999998877653  7999999876654 5677888899999999999999


Q ss_pred             EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEe----------eCCCeEEEEeCCCCeeEE
Q 016458          126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS----------SGDQTCVLWDITTGLRTS  195 (389)
Q Consensus       126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~dg~i~iwd~~~~~~~~  195 (389)
                      +++.++.+++|++....       ....+..|...+.+++|+|++ ++|+.+          ..++.+++||+.+++...
T Consensus       102 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~spdg-~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~  173 (360)
T d1k32a3         102 VANDRFEIMTVDLETGK-------PTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA  173 (360)
T ss_dssp             EEETTSEEEEEETTTCC-------EEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred             eeccccccccccccccc-------eeeeeecccccccchhhccce-eeeeeeccccccceeeccccceeeeccccCceee
Confidence            99999999999998755       566777888899999999998 556533          345679999999887665


Q ss_pred             EecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc------ceeEEee---------------------
Q 016458          196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR------AVRTFHG---------------------  248 (389)
Q Consensus       196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~---------------------  248 (389)
                      ..      .+...+..+.|+| +++.|++++.++.+.+||......      ....+..                     
T Consensus       174 ~~------~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  246 (360)
T d1k32a3         174 AT------TENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGE  246 (360)
T ss_dssp             CS------CSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCC
T ss_pred             ec------ccccccccccccC-CCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccc
Confidence            53      5667788999999 888999999999999998643210      0000000                     


Q ss_pred             ---------------eccceEEEEEecCC-------------CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe
Q 016458          249 ---------------HEGDVNTVKFFPDG-------------NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV  300 (389)
Q Consensus       249 ---------------~~~~i~~~~~~~~~-------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i  300 (389)
                                     ..+....+...+++             .++++++.++.|++||+.+++..... .        .+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~--------~v  317 (360)
T d1k32a3         247 YDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-N--------NL  317 (360)
T ss_dssp             CCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-E--------EE
T ss_pred             eeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEec-C--------Cc
Confidence                           11112233333222             23455667889999999887643322 1        38


Q ss_pred             eEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458          301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (389)
                      .+++|+|||++|++++.||.|++||+..++...++
T Consensus       318 ~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~  352 (360)
T d1k32a3         318 TDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV  352 (360)
T ss_dssp             EEEEECTTSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred             CEEEECCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence            99999999999999999999999999998877776

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=6.8e-28  Score=210.05  Aligned_cols=297  Identities=9%  Similarity=0.043  Sum_probs=201.4

Q ss_pred             ccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe-----eCCCcEEEE
Q 016458           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-----LPCAWVMTC  115 (389)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-----~~~~~v~~~  115 (389)
                      ...........|+....+++.++..|. .+..++|||||++|++++.|++|++||+.+++......     .|...+.++
T Consensus        36 V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~  114 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK  114 (426)
T ss_dssp             EEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEee
Confidence            344556677889999999999999885 59999999999999999999999999999988654332     344556677


Q ss_pred             EECCCCcEEEEe-cCCCcEEEEeCCCCCCCCCCCcceeeecccccce-----------EEEEEeeCCCcEEEEeeCCCeE
Q 016458          116 AFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV-----------SCCQYVPDEDTHLITSSGDQTC  183 (389)
Q Consensus       116 ~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~~l~~~~~dg~i  183 (389)
                      +|+|+|++++++ ..++.+.+||.....       .......|...+           ..+.+++++...+.+....+.+
T Consensus       115 ~~spDG~~l~v~~~~~~~v~i~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i  187 (426)
T d1hzua2         115 FKGYEDRYTIAGAYWPPQFAIMDGETLE-------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV  187 (426)
T ss_dssp             STTCTTTEEEEEEEESSEEEEEETTTCC-------EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             eecCCCCEEEEeecCCCeEEEEcCCccc-------eeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeE
Confidence            888999987555 578999999998754       444444444433           4444555543333333444555


Q ss_pred             EEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCC------------------------
Q 016458          184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA------------------------  239 (389)
Q Consensus       184 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------------------------  239 (389)
                      .+++...........    ..+...+..+.++|.+..++++...+..+.+++..+.                        
T Consensus       188 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (426)
T d1hzua2         188 LLVNYKDIDNLTVTS----IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPK  263 (426)
T ss_dssp             EEEECSSSSSCEEEE----EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETT
T ss_pred             EEEEeccccceeeEE----eccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCC
Confidence            555544433221110    2455667788888833333333333444555543321                        


Q ss_pred             -----------------------------CcceeEEeeeccceEEEEEecCCCEEEE-------EecCCeEEEEECCCCc
Q 016458          240 -----------------------------SRAVRTFHGHEGDVNTVKFFPDGNRFGT-------GSDDGTCRLFDIRTGH  283 (389)
Q Consensus       240 -----------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~-------~~~dg~i~i~d~~~~~  283 (389)
                                                   .+....+.+|...+..++|+|++++|++       ++.|++|++||+.+++
T Consensus       264 ~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~  343 (426)
T d1hzua2         264 YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD  343 (426)
T ss_dssp             TEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             CCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCC
Confidence                                         0234456678888999999999999995       5568899999999988


Q ss_pred             eeeEeecc----CCCCCCCCeeEEEeCCCCCEEEEE-----ecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458          284 QLQVYYQQ----HGENEIPHVTSIAFSISGRLLFAG-----YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (389)
Q Consensus       284 ~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (389)
                      ....+...    ....+...+..++|||||++++++     +.+|.|+|||..+++....+    .++.      .++|+
T Consensus       344 ~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i----~~~~------~~tp~  413 (426)
T d1hzua2         344 AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV----KDPR------LITPT  413 (426)
T ss_dssp             SCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEE----CCTT------CCSEE
T ss_pred             cCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEE----CCCC------ccCCC
Confidence            76655321    112234458899999999977543     35788999999999998888    3442      33577


Q ss_pred             CCeEE
Q 016458          355 GSALC  359 (389)
Q Consensus       355 ~~~l~  359 (389)
                      |+|-+
T Consensus       414 Gk~~~  418 (426)
T d1hzua2         414 GKFNV  418 (426)
T ss_dssp             EEEEH
T ss_pred             ceEeE
Confidence            76643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.96  E-value=2.1e-28  Score=212.85  Aligned_cols=316  Identities=12%  Similarity=0.046  Sum_probs=210.1

Q ss_pred             ccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeE--EEe---eCCCcEEEE
Q 016458           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH--AIK---LPCAWVMTC  115 (389)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~--~~~---~~~~~v~~~  115 (389)
                      ...+.......|+....++++.+..|. .+..++|||||++|++++.||+|++||+.+++...  .++   .|.+.+.+.
T Consensus        36 v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~  114 (432)
T d1qksa2          36 VTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSK  114 (432)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEec
Confidence            344455667789999999999999885 69999999999999999999999999998876433  333   344456666


Q ss_pred             EECCCCcEE-EEecCCCcEEEEeCCCCCCCCCCCcceeeec-----------ccccceEEEEEeeCCCcEEEEeeCCCeE
Q 016458          116 AFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-----------GHKGYVSCCQYVPDEDTHLITSSGDQTC  183 (389)
Q Consensus       116 ~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~l~~~~~dg~i  183 (389)
                      .|+|||++| +++..++.|++||..+++       ....+.           .+......+.++|++..++++...++.|
T Consensus       115 ~~SpDG~~l~vs~~~~~~v~i~d~~t~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         115 MEGWEDKYAIAGAYWPPQYVIMDGETLE-------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             STTCTTTEEEEEEEETTEEEEEETTTCC-------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             ccCCCCCEEEEEcCCCCeEEEEeCcccc-------ceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence            788899986 677789999999998755       232222           2345567789999987777788889999


Q ss_pred             EEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEE-eeCCCceEEEeCCCCCcceeEEee-----eccceEEEE
Q 016458          184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS-GSCDSTARLWDTRVASRAVRTFHG-----HEGDVNTVK  257 (389)
Q Consensus       184 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~i~~~~  257 (389)
                      .+||..+.+......    ..+...+..++++| +++++++ +..++.+.++|.... +....+..     |........
T Consensus       188 ~~~d~~~~~~~~~~~----i~~g~~~~~~~~sp-dg~~~~va~~~~~~v~v~d~~~~-~~~~~~~~g~~~~~~~~~~~~~  261 (432)
T d1qksa2         188 LLVDYTDLNNLKTTE----ISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPGRGANFV  261 (432)
T ss_dssp             EEEETTCSSEEEEEE----EECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCTTCEEEE
T ss_pred             EEEEccCCCcceEEE----EcccCccccceECC-CCCEEEEeccccceEEEeecccc-eEEEEeccCccccccCccccee
Confidence            999998876544331    13456788999999 6665554 445668888888765 33332221     222222233


Q ss_pred             EecCCCEEEEEe-cCCeEEEEECCCCc-------eeeEeeccCC--------------------CCCCCCeeEEEeCCCC
Q 016458          258 FFPDGNRFGTGS-DDGTCRLFDIRTGH-------QLQVYYQQHG--------------------ENEIPHVTSIAFSISG  309 (389)
Q Consensus       258 ~~~~~~~l~~~~-~dg~i~i~d~~~~~-------~~~~~~~~~~--------------------~~~~~~i~~~~~~~~~  309 (389)
                      +...+...++.. .++.|.+|+.....       ..........                    ..+.....++++ ||+
T Consensus       262 ~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg  340 (432)
T d1qksa2         262 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDI  340 (432)
T ss_dssp             ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEG
T ss_pred             cCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-Eec
Confidence            322232232222 24555555543321       1111110000                    000001223444 788


Q ss_pred             CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeee-----CCCeeEEeecceecccCccc
Q 016458          310 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-----WDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~i~~~~W~~~~~~~~  382 (389)
                      +.+++++.|+.+++|++.++..   +    ..|...|.+++|+|||++++.+.     .+|.|.|    ||..++++.
T Consensus       341 ~~la~~s~d~~~k~w~~~~~~~---l----~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i----~D~~T~k~~  407 (432)
T d1qksa2         341 KAMTGDGSDPEFKTLPIAEWAG---I----TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVV----VDDKTLELK  407 (432)
T ss_dssp             GGCCCSSSCCCEEEECHHHHHT---C----CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEE----EETTTTEEE
T ss_pred             hhhcccccCCceEecccccccc---c----CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEE----EECCCceEE
Confidence            8888888899999998765532   2    35667899999999999886553     4688999    999999874

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=1.7e-24  Score=179.45  Aligned_cols=267  Identities=13%  Similarity=0.119  Sum_probs=206.9

Q ss_pred             CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEE-EEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcE
Q 016458           45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS  123 (389)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  123 (389)
                      .......|++...+..+++... ..+..++|+|||++|+ +++.++.|++||+.+++.+..+..+.. +..++|++++..
T Consensus        10 ~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~   87 (301)
T d1l0qa2          10 ESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQ   87 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSE
T ss_pred             CCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cccccccccccc
Confidence            3445677899999998888755 4578999999999874 666889999999999999998887764 789999999986


Q ss_pred             EE-EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCccc
Q 016458          124 VA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ  202 (389)
Q Consensus       124 l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  202 (389)
                      ++ ++..++.+.+|+..++.       ....+. +.....++.|+|++..+++++..++.+.+|+..+......+     
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  154 (301)
T d1l0qa2          88 VYVTNMASSTLSVIDTTSNT-------VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV-----  154 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTE-------EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-----
T ss_pred             ccccccccceeeecccccce-------eeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeec-----
Confidence            65 45667889999998744       334444 34567889999999766778888999999999999988877     


Q ss_pred             CCCCCCeeEEEeeCCCCcEEEEeeC-CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec---CCeEEEEE
Q 016458          203 SGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFD  278 (389)
Q Consensus       203 ~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d  278 (389)
                       .....+..+.++| ++..+++++. ++.+.+|+.... ....... ....+..++|++++..+++++.   ++.|.+||
T Consensus       155 -~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D  230 (301)
T d1l0qa2         155 -SVGRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTN-SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID  230 (301)
T ss_dssp             -ECCSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTT-EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred             -ccCCCceEEEeec-cccceeeecccccccccccccce-eeeeccc-ccCCcceeeccccccccccccccceeeeeeeee
Confidence             3345678899999 5555555554 466777776654 4444443 4456788999999998876653   46899999


Q ss_pred             CCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEE-EEecCCcEEEEEcccceEEEeec
Q 016458          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF-AGYSNGDCYVWDTLLAKVVLNLG  336 (389)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~  336 (389)
                      +.+++....+....      .+..++|+|||++|+ +++.++.|.+||+.+++.+.++.
T Consensus       231 ~~t~~~~~~~~~~~------~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         231 TGTNKITARIPVGP------DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             TTTTEEEEEEECCS------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cCCCeEEEEEcCCC------CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            99998877765432      378999999999875 66678999999999999988874

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=3.6e-25  Score=186.44  Aligned_cols=269  Identities=13%  Similarity=0.067  Sum_probs=199.3

Q ss_pred             CeEEEEecCCcEEEEeCCCCCeeEEEeeCC--CcEEEEEECCCCcEE-EEecCCCcEEEEeCCCCCCCCCCCcceeeecc
Q 016458           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG  156 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  156 (389)
                      ++|++++.|++|++||+.+++.+..+..+.  ..+..++|+|+|+++ ++++.++.|.+||+.+++       .......
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~-------~~~~~~~   74 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-------TLGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-------EEEEEEC
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc-------EEEEEec
Confidence            489999999999999999999999887643  457899999999987 466789999999998865       3344333


Q ss_pred             c-----ccceEEEEEeeCCCcEEEEee------------CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458          157 H-----KGYVSCCQYVPDEDTHLITSS------------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (389)
Q Consensus       157 ~-----~~~v~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (389)
                      +     ...+..++|+|++ ..++++.            .++.+.+||..++.....+      .....+..++++| ++
T Consensus        75 ~~~~~~~~~~~~v~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~~~~~s~-dg  146 (337)
T d1pbyb_          75 STPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF------EAPRQITMLAWAR-DG  146 (337)
T ss_dssp             CBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE------ECCSSCCCEEECT-TS
T ss_pred             CCCcccccceeeEEEcCCC-cEEEEeecCCcceeeeccccccceeeccccCCeEEEec------cccCCceEEEEcC-CC
Confidence            2     3345678999998 4555554            4678999999999988887      2345678899999 77


Q ss_pred             cEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec------------------------CCCEEEEEecCCeEE
Q 016458          220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP------------------------DGNRFGTGSDDGTCR  275 (389)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~------------------------~~~~l~~~~~dg~i~  275 (389)
                      .++++++  +.+.+||..+. .....+..+... ....++|                        +......+..++.+.
T Consensus       147 ~~l~~~~--~~~~~~d~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (337)
T d1pbyb_         147 SKLYGLG--RDLHVMDPEAG-TLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL  222 (337)
T ss_dssp             SCEEEES--SSEEEEETTTT-EEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred             CEEEEEc--CCcceeeeecC-cEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEE
Confidence            7777765  45788998876 444444322111 1111111                        222223334456799


Q ss_pred             EEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458          276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (389)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (389)
                      +|+..++...........    ..+..+.++|++.+++.+  ++.|++||+.+++.+..+.     +...+.+++|+|||
T Consensus       223 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-----~~~~~~~~~~s~dG  291 (337)
T d1pbyb_         223 TMDLETGEMAMREVRIMD----VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-----LPHSYYSVNVSTDG  291 (337)
T ss_dssp             EEETTTCCEEEEEEEECS----SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-----CSSCCCEEEECTTS
T ss_pred             EEEcCCCcEEEEEecCCC----cceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-----CCCCEEEEEECCCC
Confidence            999998876654433322    247888999999998776  4789999999999998873     45678999999999


Q ss_pred             CeEEeeeCCCeeEEeecceecccCccc
Q 016458          356 SALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       356 ~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      ++|++++.||.|+|    ||..+++..
T Consensus       292 ~~l~v~~~~~~i~v----~D~~t~~~v  314 (337)
T d1pbyb_         292 STVWLGGALGDLAA----YDAETLEKK  314 (337)
T ss_dssp             CEEEEESBSSEEEE----EETTTCCEE
T ss_pred             CEEEEEeCCCcEEE----EECCCCcEE
Confidence            99999999999999    999998755

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=2.7e-26  Score=194.22  Aligned_cols=279  Identities=11%  Similarity=0.040  Sum_probs=197.8

Q ss_pred             EEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeC-CCcEEEEEECCCCcEEE-EecCCCcEEEEeCCCCCCCCCCCcc
Q 016458           73 LDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP-CAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPV  150 (389)
Q Consensus        73 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~  150 (389)
                      ++|++++++|++++.|++|.+||+.+++.+.++..+ ...+.+++|+|||++++ ++..++.|.+||+.+++       .
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~-------~   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK-------N   74 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE-------E
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCe-------e
Confidence            578999999999999999999999999999988754 45688999999999874 55678999999998754       2


Q ss_pred             eeeec------ccccceEEEEEeeCCCcEEEEee------------CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458          151 SRMLS------GHKGYVSCCQYVPDEDTHLITSS------------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (389)
Q Consensus       151 ~~~~~------~~~~~v~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  212 (389)
                      ...+.      .+...+..++|+|+|. ++++++            .++.+.+|+..++.....+..   ......+..+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~DG~-~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~  150 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT---FPMPRQVYLM  150 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE---EECCSSCCCE
T ss_pred             eeeecccccccccCCceEEEEEecCCC-EEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEe---eeccCceEEE
Confidence            22221      1223456789999984 555443            477889999887665443311   1122345555


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC--------------------------CEEE
Q 016458          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG--------------------------NRFG  266 (389)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------------~~l~  266 (389)
                      .+++ ++.+++.   ++.+.+|+..+. ..+..+..+. ....+.++|++                          ..++
T Consensus       151 ~~~~-~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (346)
T d1jmxb_         151 RAAD-DGSLYVA---GPDIYKMDVKTG-KYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA  224 (346)
T ss_dssp             EECT-TSCEEEE---SSSEEEECTTTC-CEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------C
T ss_pred             EecC-CCEEEEe---CCcceEEEccCC-CEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEe
Confidence            5655 6655554   356899998876 5555544322 22333333333                          2334


Q ss_pred             EEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCe
Q 016458          267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI  346 (389)
Q Consensus       267 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  346 (389)
                      ++..++.+.+||+.++............    .+..+.+++++.+++.... +.|.+||..+++.+..+.     +...+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-----~~~~~  294 (346)
T d1jmxb_         225 TADLLYGYLSVDLKTGKTHTQEFADLTE----LYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-----LDHTY  294 (346)
T ss_dssp             CCEEEEEEEEEETTTCCEEEEEEEECSS----CEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-----CSSCC
T ss_pred             eccCCceEEEEECCCCceEEEEeecccc----eeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-----CCCCE
Confidence            4455667888998887766554433322    4788899998888777654 579999999999888773     34579


Q ss_pred             eEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          347 TCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       347 ~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      .+++|+|||++|++++.||.|+|    ||+.+++..
T Consensus       295 ~~va~s~DG~~l~v~~~d~~v~v----~D~~t~~~i  326 (346)
T d1jmxb_         295 YCVAFDKKGDKLYLGGTFNDLAV----FNPDTLEKV  326 (346)
T ss_dssp             CEEEECSSSSCEEEESBSSEEEE----EETTTTEEE
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEE----EECccCCEE
Confidence            99999999999999999999999    999998765

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=1.8e-24  Score=187.84  Aligned_cols=294  Identities=12%  Similarity=0.039  Sum_probs=199.0

Q ss_pred             CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccc
Q 016458           78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH  157 (389)
Q Consensus        78 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  157 (389)
                      +.-++++.+.||+|.|||..+++.+..+..+. .+..++|+|||+++++++.|+.|++||+.+.+..  ..........|
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~--~~~~i~~~~~~  107 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--TVAEIKIGSEA  107 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC--EEEEEECCSEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCce--EEEEEecCCCC
Confidence            33346889999999999999999999999874 5999999999999999999999999999874411  01112223456


Q ss_pred             ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc------cCCCCCCeeEEEeeCCCCcEEEEeeCCCce
Q 016458          158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF------QSGHTADVLSVSISGSNSRMFVSGSCDSTA  231 (389)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  231 (389)
                      .+.+.+..|+|||..++++++.++.|++||..+++....+....      ...+......+.++|++..++++...++.|
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence            67777778889986566889999999999999998887764321      112445567788998555566777788999


Q ss_pred             EEEeCCCCCcceeEE-eeeccceEEEEEecCCCEEEEEec-CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC
Q 016458          232 RLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  309 (389)
Q Consensus       232 ~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  309 (389)
                      .+||.... +..... -.+...+..++|+|+|+++++++. ++.+.++|..+++....+.......+........+...+
T Consensus       188 ~~~d~~~~-~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g  266 (432)
T d1qksa2         188 LLVDYTDL-NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG  266 (432)
T ss_dssp             EEEETTCS-SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE
T ss_pred             EEEEccCC-CcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCC
Confidence            99998876 333322 235567889999999998877764 567999999888777666544333333333444444444


Q ss_pred             CEEEEEe-cCCcEEEEEcccc-------eEEEeecCc---------------------CCCCCCCeeEEEECCCCCeEEe
Q 016458          310 RLLFAGY-SNGDCYVWDTLLA-------KVVLNLGSL---------------------QNSHEGRITCLGLSADGSALCT  360 (389)
Q Consensus       310 ~~l~~~~-~dg~i~i~d~~~~-------~~~~~~~~~---------------------~~~~~~~v~~~~~~~~~~~l~~  360 (389)
                      ...++.. .++.+.+|+....       +....+...                     ...|.....++++ ||++.|++
T Consensus       267 ~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~  345 (432)
T d1qksa2         267 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTG  345 (432)
T ss_dssp             EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCC
T ss_pred             ceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-Eechhhcc
Confidence            4333332 2556666654321       111111000                     0122222334444 77888888


Q ss_pred             eeCCCeeEEeecceecccCc
Q 016458          361 GSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       361 ~~~dg~i~i~~~~W~~~~~~  380 (389)
                      ++.|+.+++    |++.++.
T Consensus       346 ~s~d~~~k~----w~~~~~~  361 (432)
T d1qksa2         346 DGSDPEFKT----LPIAEWA  361 (432)
T ss_dssp             SSSCCCEEE----ECHHHHH
T ss_pred             cccCCceEe----ccccccc
Confidence            888888888    8876654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=1.6e-23  Score=176.26  Aligned_cols=275  Identities=11%  Similarity=0.060  Sum_probs=199.8

Q ss_pred             cCCCCCcccCCCcceeeeecccc--cCcEEEEEEcCCCCeE-EEEecCCcEEEEeCCCCCeeEEEeeCCC-----cEEEE
Q 016458           44 SQGRAPVSFGPTDLVCCRTLQGH--AGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCA-----WVMTC  115 (389)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~l~~h--~~~v~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~-----~v~~~  115 (389)
                      +.+.....|+....++++++..+  ...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+..     .+..+
T Consensus         8 ~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v   87 (337)
T d1pbyb_           8 ARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA   87 (337)
T ss_dssp             ETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCE
T ss_pred             cCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeE
Confidence            34455677889999999888654  4568899999999987 4667899999999999999988876543     34578


Q ss_pred             EECCCCcEEEEec------------CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeE
Q 016458          116 AFSPTGQSVACGG------------LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC  183 (389)
Q Consensus       116 ~~~~~~~~l~~~~------------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  183 (389)
                      +|+|++++++++.            .++.+.+||.....       ....+. +...+..+.|+|++ .++++++.  .+
T Consensus        88 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~--~~  156 (337)
T d1pbyb_          88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-------RRKAFE-APRQITMLAWARDG-SKLYGLGR--DL  156 (337)
T ss_dssp             EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-------EEEEEE-CCSSCCCEEECTTS-SCEEEESS--SE
T ss_pred             EEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe-------EEEecc-ccCCceEEEEcCCC-CEEEEEcC--Cc
Confidence            9999999998875            35678888888744       333333 34567889999998 56766654  47


Q ss_pred             EEEeCCCCeeEEEecCcccCCC-CCCeeEEEeeC----------------CCCcEEEEeeCCCceEEEeCCCCCcceeEE
Q 016458          184 VLWDITTGLRTSVFGGEFQSGH-TADVLSVSISG----------------SNSRMFVSGSCDSTARLWDTRVASRAVRTF  246 (389)
Q Consensus       184 ~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  246 (389)
                      .+||..+++....+........ ........+.+                ........+..++.+.+||..........+
T Consensus       157 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (337)
T d1pbyb_         157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV  236 (337)
T ss_dssp             EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred             ceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe
Confidence            7899999988777633210000 00000000000                011111223345568899998775455556


Q ss_pred             eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458          247 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       247 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (389)
                      ..+...+..+.++|++.+++.+  ++.|++||+.+++.+..+....      .+.+++|+|||++|++++.+|.|++||.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~------~~~~~~~s~dG~~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH------SYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS------CCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             cCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCC------CEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            6777788899999999988766  5799999999999888775533      3789999999999999999999999999


Q ss_pred             ccceEEEeecC
Q 016458          327 LLAKVVLNLGS  337 (389)
Q Consensus       327 ~~~~~~~~~~~  337 (389)
                      .+++.+.++..
T Consensus       309 ~t~~~v~~i~~  319 (337)
T d1pbyb_         309 ETLEKKGQVDL  319 (337)
T ss_dssp             TTCCEEEEEEC
T ss_pred             CCCcEEEEEEC
Confidence            99999988853

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.92  E-value=2.5e-21  Score=165.26  Aligned_cols=292  Identities=9%  Similarity=-0.036  Sum_probs=204.0

Q ss_pred             cccccCcEEEEEEcCCCCeEEEEe-----cCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec---------
Q 016458           63 LQGHAGKVYSLDWTSERNRIVSAS-----QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG---------  128 (389)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~~~~-----~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------  128 (389)
                      ...|.+++.+++++|||+.++...     .++.|.+||..+++.+..+..+..+  .++|+|||++|++++         
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccc
Confidence            346888999999999999887642     3467999999999999988766543  799999999998874         


Q ss_pred             -CCCcEEEEeCCCCCCCCCCCcceeeecccccc-------eEEEEEeeCCCcEEEE-eeCCCeEEEEeCCCCeeEEEecC
Q 016458          129 -LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY-------VSCCQYVPDEDTHLIT-SSGDQTCVLWDITTGLRTSVFGG  199 (389)
Q Consensus       129 -~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~  199 (389)
                       .++.|.+||..+++       .......+...       ...+.|++++...++. ...++.+.+|+....+.....  
T Consensus        94 ~~~~~v~v~D~~t~~-------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~--  164 (373)
T d2madh_          94 KRTDYVEVFDPVTFL-------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL--  164 (373)
T ss_pred             ccceEEEEEECCCCc-------EEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe--
Confidence             35789999998865       33333333322       2457888887543333 244678889998877665544  


Q ss_pred             cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec------cceEEEEEecCCCEEEEEecCCe
Q 016458          200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE------GDVNTVKFFPDGNRFGTGSDDGT  273 (389)
Q Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~  273 (389)
                             ....++.++|.....+++.+.|+.+.+||.... ........+.      .....+.+++++. ++..+.++.
T Consensus       165 -------~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  235 (373)
T d2madh_         165 -------SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGG-AAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGK  235 (373)
T ss_pred             -------ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCc-eeeEEEeeeccccCccceeeeEEECCCce-EEEecCCce
Confidence                   235678889866677788999999999998876 4443333221      1234455555554 455667889


Q ss_pred             EEEEECCCCceeeEeeccCCC-------CCCCCeeEEEeCCCCCEEE----------EEecCCcEEEEEcccceEEEeec
Q 016458          274 CRLFDIRTGHQLQVYYQQHGE-------NEIPHVTSIAFSISGRLLF----------AGYSNGDCYVWDTLLAKVVLNLG  336 (389)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~----------~~~~dg~i~i~d~~~~~~~~~~~  336 (389)
                      +.+|+................       ........+++++++..++          ....++.+.+||..+++.+..+ 
T Consensus       236 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~-  314 (373)
T d2madh_         236 ILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI-  314 (373)
T ss_pred             EEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe-
Confidence            999998876543322211100       0001234456666665544          4455678999999999998887 


Q ss_pred             CcCCCCCCCeeEEEECCCCCe--EEeeeCCCeeEEeecceecccCcccC
Q 016458          337 SLQNSHEGRITCLGLSADGSA--LCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       337 ~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                          .+...+.+++|+|||+.  +++++.|+.|+|    ||+.+|+...
T Consensus       315 ----~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v----~D~~tg~~~~  355 (373)
T d2madh_         315 ----SLGHDVDAISVAQDGGPDLYALSAGTEVLHI----YDAGAGDQDQ  355 (373)
T ss_pred             ----cCCCCeeEEEECCCCCEEEEEEeCCCCeEEE----EECCCCCEEE
Confidence                35667899999999984  468899999999    9999998754

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=6.8e-22  Score=166.01  Aligned_cols=288  Identities=13%  Similarity=0.126  Sum_probs=189.5

Q ss_pred             eEEEEecCCcEEEEeCCCCCeeEEE--eeCCCcEEEEEECCCCcEEEEe-cCCCcEEEEeCCCCCCCCCCCcceeeeccc
Q 016458           81 RIVSASQDGRLIVWNALTSQKTHAI--KLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGH  157 (389)
Q Consensus        81 ~l~~~~~dg~v~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  157 (389)
                      .+++++.|++|++|++.+...+..+  ..+.+.+..++|+|||++|+++ ..|+.|++|++.....   .. .......+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~---~~-~~~~~~~~   81 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG---AL-TFAAESAL   81 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC---CE-EEEEEEEC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC---cE-EEeeeccc
Confidence            4577789999999999765544333  3566889999999999998655 4589999999986431   11 11112233


Q ss_pred             ccceEEEEEeeCCCcEEEEee-CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCCceEEEe
Q 016458          158 KGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWD  235 (389)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d  235 (389)
                      ...+..++|+|+|. ++++++ .++.|.+|+............   ..+...+.++.++| +++.+++++ .+..+.+|+
T Consensus        82 ~~~p~~l~~spDg~-~l~v~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~  156 (333)
T d1ri6a_          82 PGSLTHISTDHQGQ-FVFVGSYNAGNVSVTRLEDGLPVGVVDV---VEGLDGCHSANISP-DNRTLWVPALKQDRICLFT  156 (333)
T ss_dssp             SSCCSEEEECTTSS-EEEEEETTTTEEEEEEEETTEEEEEEEE---ECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEE
T ss_pred             CCCceEEEEcCCCC-EEeecccCCCceeeeccccccceecccc---cCCCccceEEEeee-cceeeeccccccceeeEEE
Confidence            45577899999984 555555 578999999887765544421   35566788899999 555555544 566799999


Q ss_pred             CCCCCcceeEEe-----eeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceee----Eeec-cCCCCCCCCeeEEE
Q 016458          236 TRVASRAVRTFH-----GHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQ----VYYQ-QHGENEIPHVTSIA  304 (389)
Q Consensus       236 ~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~----~~~~-~~~~~~~~~i~~~~  304 (389)
                      ............     ........++|++++.+++... ..+...+|+........    .... ............++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (333)
T d1ri6a_         157 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH  236 (333)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred             eccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEE
Confidence            876533322221     1234567899999998876654 55677888765433211    1111 11122233467789


Q ss_pred             eCCCCCEEEEE-ecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC-CCeeEEeecceec--ccCc
Q 016458          305 FSISGRLLFAG-YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DTNLKVNLGFWRV--QEGA  380 (389)
Q Consensus       305 ~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~W~~--~~~~  380 (389)
                      ++++++++++. ..++.+.+|++............ ......+.+++|+|||++|++++. ++.|++    |++  ++|+
T Consensus       237 ~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~a~spDGk~l~va~~~~~~v~v----~~id~~tG~  311 (333)
T d1ri6a_         237 ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF-QPTETQPRGFNVDHSGKYLIAAGQKSHHISV----YEIVGEQGL  311 (333)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE-EECSSSCCCEEECTTSSEEEEECTTTCEEEE----EEEETTTTE
T ss_pred             EecccCceeeecccCCeEEEEEEcCCCCEEEEEEE-eCCCCCeeEEEEeCCCCEEEEEECCCCeEEE----EEEECCCCc
Confidence            99999977665 45678999988754333222110 233456788999999998877654 688999    854  5676


Q ss_pred             cc
Q 016458          381 LS  382 (389)
Q Consensus       381 ~~  382 (389)
                      +.
T Consensus       312 l~  313 (333)
T d1ri6a_         312 LH  313 (333)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=3.3e-22  Score=168.78  Aligned_cols=273  Identities=12%  Similarity=0.021  Sum_probs=194.9

Q ss_pred             cccCCCCCcccCCCcceeeeecc-cccCcEEEEEEcCCCCeE-EEEecCCcEEEEeCCCCCeeEEEeeCCC------cEE
Q 016458           42 SRSQGRAPVSFGPTDLVCCRTLQ-GHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCA------WVM  113 (389)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~------~v~  113 (389)
                      ..+.+.....|+....+++++++ .|...+.+++|+|||+++ ++++.++.|++||+.+++.+..+.....      .+.
T Consensus        13 ~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~   92 (346)
T d1jmxb_          13 VTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY   92 (346)
T ss_dssp             EEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS
T ss_pred             EEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceE
Confidence            34445567789999999999887 456678999999999987 4556789999999999998887765432      356


Q ss_pred             EEEECCCCcEEEEec------------CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC
Q 016458          114 TCAFSPTGQSVACGG------------LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ  181 (389)
Q Consensus       114 ~~~~~~~~~~l~~~~------------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  181 (389)
                      .++|+|+|+++++++            .++.+.+|+..++....    ... .......+..+.+++++ .++++ +  +
T Consensus        93 ~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~-~~~~~-~--~  163 (346)
T d1jmxb_          93 SFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK----PVR-TFPMPRQVYLMRAADDG-SLYVA-G--P  163 (346)
T ss_dssp             CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC----CSE-EEECCSSCCCEEECTTS-CEEEE-S--S
T ss_pred             EEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeee----EEE-eeeccCceEEEEecCCC-EEEEe-C--C
Confidence            789999999998765            46778888887644110    111 11112334455566654 44443 2  4


Q ss_pred             eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC-------------------------CCCcEEEEeeCCCceEEEeC
Q 016458          182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG-------------------------SNSRMFVSGSCDSTARLWDT  236 (389)
Q Consensus       182 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------------------~~~~~l~~~~~dg~i~i~d~  236 (389)
                      .+.+|++.++.....+...      .....+.++|                         .....++++..++.+.+||.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
T d1jmxb_         164 DIYKMDVKTGKYTVALPLR------NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  237 (346)
T ss_dssp             SEEEECTTTCCEEEEECST------TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             cceEEEccCCCEEEEEecC------CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence            5889999998887776321      1111111121                         12333444556677889999


Q ss_pred             CCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458          237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (389)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (389)
                      ............|...+..+.+++++.+++.... +.|.+||..+++.+..+....      .+.+++|+|||++|++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~------~~~~va~s~DG~~l~v~~  310 (346)
T d1jmxb_         238 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDH------TYYCVAFDKKGDKLYLGG  310 (346)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSS------CCCEEEECSSSSCEEEES
T ss_pred             CCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCC------CEEEEEEcCCCCEEEEEe
Confidence            8875556666778888999999998888877654 589999999998887775433      378999999999999999


Q ss_pred             cCCcEEEEEcccceEEEeec
Q 016458          317 SNGDCYVWDTLLAKVVLNLG  336 (389)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~  336 (389)
                      .||.|++||..+++.+.++.
T Consensus       311 ~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         311 TFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             BSSEEEEEETTTTEEEEEEE
T ss_pred             CCCcEEEEECccCCEEEEEE
Confidence            99999999999999998884

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.90  E-value=4.2e-20  Score=157.61  Aligned_cols=280  Identities=10%  Similarity=0.021  Sum_probs=195.9

Q ss_pred             cccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEe----------cCCcEEEEeCCCCCeeEEEeeCCCcE-------
Q 016458           50 VSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLPCAWV-------  112 (389)
Q Consensus        50 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~~~~v-------  112 (389)
                      ..++....+.+.++.++..+  .++|+|||++|++++          .++.|.+||..+++.+..+..+....       
T Consensus        50 ~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~  127 (373)
T d2madh_          50 WVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS  127 (373)
T ss_pred             EEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCC
Confidence            35667777888888777654  799999999998875          35789999999999988887765443       


Q ss_pred             EEEEECCCCcEEEEec--CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC
Q 016458          113 MTCAFSPTGQSVACGG--LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT  190 (389)
Q Consensus       113 ~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  190 (389)
                      ..+.|+++++.++...  .++.+.+|+.....           ...+.....++.++|++...+++.+.|+.+.+|+...
T Consensus       128 ~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~  196 (373)
T d2madh_         128 WMNANTPNNADLLFFQFAAGPAVGLVVQGGSS-----------DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAG  196 (373)
T ss_pred             CcEEEEeCCCcEEEEEEcCCCceEEeeccCCe-----------EEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCC
Confidence            4467888888765543  45678888876532           2233445678899999987888999999999999998


Q ss_pred             CeeEEEecCcccC-CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc-eeEEee----------eccceEEEEE
Q 016458          191 GLRTSVFGGEFQS-GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHG----------HEGDVNTVKF  258 (389)
Q Consensus       191 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~----------~~~~i~~~~~  258 (389)
                      +............ ........+.+.  ....++..+.++.+.+|+....... ......          .......+++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (373)
T d2madh_         197 GAAGAGLVGAMLTAAQNLLTQPAQAN--KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY  274 (373)
T ss_pred             ceeeEEEeeeccccCccceeeeEEEC--CCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEE
Confidence            8777665322111 111222334444  3345556677889999988765211 111111          1122344566


Q ss_pred             ecCCCEE----------EEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCE--EEEEecCCcEEEEEc
Q 016458          259 FPDGNRF----------GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL--LFAGYSNGDCYVWDT  326 (389)
Q Consensus       259 ~~~~~~l----------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~~~~dg~i~i~d~  326 (389)
                      ++++..+          ++...++.+.+||..+++.+..+....      .+..++|+|||+.  +++++.|+.|++||+
T Consensus       275 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~------~~~~~a~spDG~~~l~vt~~~d~~v~v~D~  348 (373)
T d2madh_         275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH------DVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             ecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCC------CeeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence            6655544          445567789999999998888765432      3789999999984  467889999999999


Q ss_pred             ccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458          327 LLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (389)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (389)
                      .+++.+..+    ..+....+.|++.++
T Consensus       349 ~tg~~~~~~----~~~g~~P~~l~~~~~  372 (373)
T d2madh_         349 GAGDQDQST----VELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCCEEEEE----CCCCCCCcEEEEecC
Confidence            999999999    667777778877654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=1.6e-21  Score=165.30  Aligned_cols=289  Identities=12%  Similarity=0.004  Sum_probs=189.2

Q ss_pred             cEEEEEEcCCCCeEEEEe-----cCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec----------CCCcE
Q 016458           69 KVYSLDWTSERNRIVSAS-----QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVC  133 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~-----~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i  133 (389)
                      ++.-.+.+||++.+++..     .++.|.+||..+++.+.++..+..+  .++|+|+|++|++.+          .++.|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence            344446789999887653     3567999999999999988876554  699999999887653          47899


Q ss_pred             EEEeCCCCCCCCCCCcceeeeccc-------ccceEEEEEeeCCCcEEEEe--eCCCeEEEEeCCCCeeEEEecCcccC-
Q 016458          134 SIFNLNSPTDKDGNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLITS--SGDQTCVLWDITTGLRTSVFGGEFQS-  203 (389)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~-  203 (389)
                      .+||..+++       .......+       ......+.|++++. .++.+  +.+..+.+|+..++.....+...... 
T Consensus        81 ~v~D~~t~~-------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (355)
T d2bbkh_          81 EVFDPVTLL-------PTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH  152 (355)
T ss_dssp             EEECTTTCC-------EEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE
T ss_pred             EEEECCCCC-------EEEEEecCCcceeecCCCCceEEEecCCC-eeEEecCCCCceeeeeecCCCcEeeEEecCCcce
Confidence            999998855       22222211       12234578999985 44443  45678999999999888776311000 


Q ss_pred             -CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCC
Q 016458          204 -GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG  282 (389)
Q Consensus       204 -~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  282 (389)
                       ........+.++++...+++....++.+.+++.....      ..+...+....+.+++..++.++.++.+++|++..+
T Consensus       153 ~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  226 (355)
T d2bbkh_         153 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH------PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG  226 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS------CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred             EeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc------ceecceeeeccccCCCCeEEEecCCCeEEEEecCCC
Confidence             0001122333444222222223333334444333221      112334556778888889999999999999999876


Q ss_pred             ceeeEeeccCC-------CCCCCCeeEEEeCCCCCEEEEEecC----------CcEEEEEcccceEEEeecCcCCCCCCC
Q 016458          283 HQLQVYYQQHG-------ENEIPHVTSIAFSISGRLLFAGYSN----------GDCYVWDTLLAKVVLNLGSLQNSHEGR  345 (389)
Q Consensus       283 ~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~  345 (389)
                      ...........       .........+++++++..++....+          ..|.+||..+++.+..+.     +...
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-----~~~~  301 (355)
T d2bbkh_         227 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-----MGHE  301 (355)
T ss_dssp             SCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-----EEEE
T ss_pred             cEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-----CCCC
Confidence            54322111000       0001123458899999988876544          369999999999888772     3456


Q ss_pred             eeEEEECCCCC--eEEeeeCCCeeEEeecceecccCccc
Q 016458          346 ITCLGLSADGS--ALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       346 v~~~~~~~~~~--~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      +.+++|+|||+  ++++++.|+.|++    ||+++|++.
T Consensus       302 ~~~~a~spDG~~~l~v~~~~d~~i~v----~D~~tg~~~  336 (355)
T d2bbkh_         302 IDSINVSQDEKPLLYALSTGDKTLYI----HDAESGEEL  336 (355)
T ss_dssp             ECEEEECCSSSCEEEEEETTTTEEEE----EETTTCCEE
T ss_pred             EEEEEEcCCCCeEEEEEECCCCEEEE----EECCCCCEE
Confidence            89999999998  4566778999999    999999865

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=2.5e-20  Score=157.82  Aligned_cols=283  Identities=15%  Similarity=0.144  Sum_probs=185.4

Q ss_pred             CcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEe----------cCCcEEEEeCCCCCeeEEEeeCCC-------c
Q 016458           49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLPCA-------W  111 (389)
Q Consensus        49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~~~-------~  111 (389)
                      ...|+....+.+.++..+..+  .++|+|||++|++++          .|+.|++||..+++.+..+..+..       .
T Consensus        30 v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~  107 (355)
T d2bbkh_          30 QFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTY  107 (355)
T ss_dssp             EEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC
T ss_pred             EEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCC
Confidence            345777888888888776554  799999999887653          478999999999999888775442       2


Q ss_pred             EEEEEECCCCcEEEEec--CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          112 VMTCAFSPTGQSVACGG--LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       112 v~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                      ...++|+|++++++++.  .+..+.+|+..++.       ....+..+....   .+ +.+....++.+.|+....+...
T Consensus       108 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~~-~~~~~~~~~~~~dg~~~~v~~~  176 (355)
T d2bbkh_         108 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-------FKRMLDVPDCYH---IF-PTAPDTFFMHCRDGSLAKVAFG  176 (355)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-------EEEEEECCSEEE---EE-EEETTEEEEEETTSCEEEEECC
T ss_pred             CceEEEecCCCeeEEecCCCCceeeeeecCCCc-------EeeEEecCCcce---Ee-ecCCcceEEEcCCCCEEEEEec
Confidence            34678999999887764  46788999998754       333333222111   11 1111233334444444444333


Q ss_pred             CCeeEEEecC-cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcce-eEEeee----------ccceEEEE
Q 016458          190 TGLRTSVFGG-EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHGH----------EGDVNTVK  257 (389)
Q Consensus       190 ~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~----------~~~i~~~~  257 (389)
                      .......... .....+...+....+.+ .+..++.++.++.+++|++....... .....+          ......++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  255 (355)
T d2bbkh_         177 TEGTPEITHTEVFHPEDEFLINHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA  255 (355)
T ss_dssp             SSSCCEEEECCCCSCTTSCBCSCCEEET-TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred             CCCeEEEEecccccceecceeeeccccC-CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEE
Confidence            3222111111 11123344455667777 66777888899999999998653211 111111          12345688


Q ss_pred             EecCCCEEEEEecC----------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC--EEEEEecCCcEEEEE
Q 016458          258 FFPDGNRFGTGSDD----------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDCYVWD  325 (389)
Q Consensus       258 ~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d  325 (389)
                      +++++..++....+          ..|.+||..+++.+..+....      .+.+++|+|||+  +++++..|+.|++||
T Consensus       256 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~------~~~~~a~spDG~~~l~v~~~~d~~i~v~D  329 (355)
T d2bbkh_         256 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH------EIDSINVSQDEKPLLYALSTGDKTLYIHD  329 (355)
T ss_dssp             EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE------EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             EeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCC------CEEEEEEcCCCCeEEEEEECCCCEEEEEE
Confidence            99999988776544          369999999998887775432      278999999998  455667799999999


Q ss_pred             cccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458          326 TLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (389)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (389)
                      +.+++.+.++    ..+......+.+.++|
T Consensus       330 ~~tg~~~~~i----~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         330 AESGEELRSV----NQLGHGPQVITTADMG  355 (355)
T ss_dssp             TTTCCEEEEE----CCCCSSCCEEECCCCC
T ss_pred             CCCCCEEEEE----eCcCCCccEEEeCCCC
Confidence            9999999998    5555555666655443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2e-19  Score=150.71  Aligned_cols=261  Identities=10%  Similarity=0.099  Sum_probs=173.9

Q ss_pred             ccccCcEEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCeeEEEe---eCCCcEEEEEECCCCcEEEEecC-CCcEEEEeC
Q 016458           64 QGHAGKVYSLDWTSERNRIVSAS-QDGRLIVWNALTSQKTHAIK---LPCAWVMTCAFSPTGQSVACGGL-DSVCSIFNL  138 (389)
Q Consensus        64 ~~h~~~v~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~~  138 (389)
                      ..|.+.|..|+|+|||++|++++ .|+.|++|++........+.   .....+..++|+|+|++|++++. ++.|.+|+.
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence            46888999999999999886555 58999999997765433332   23345778999999999988875 678999988


Q ss_pred             CCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC-cccCCCCCCeeEEEeeCC
Q 016458          139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG-EFQSGHTADVLSVSISGS  217 (389)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~  217 (389)
                      ....     .........+...+.++.++|++...+.....+..|.+|+............ ............+++++.
T Consensus       113 ~~~~-----~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~  187 (333)
T d1ri6a_         113 EDGL-----PVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN  187 (333)
T ss_dssp             ETTE-----EEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             cccc-----ceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecc
Confidence            7633     1122334456667888999999854455555677899999877543322211 111334456788999984


Q ss_pred             CCcEEEEeeCCCceEEEeCCCCCcceeEEe---------eeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCceeeE
Q 016458          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFH---------GHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQV  287 (389)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~  287 (389)
                      ....+.+....+...+++............         ........+++++++++++.. ..++.+.+|++........
T Consensus       188 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (333)
T d1ri6a_         188 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS  267 (333)
T ss_dssp             SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred             ceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEE
Confidence            444445555667788888765432222111         122346678999999876655 4678899999876554443


Q ss_pred             eeccCCCCCCCCeeEEEeCCCCCEEEEEec-CCcEEEEE--cccceE
Q 016458          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWD--TLLAKV  331 (389)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d--~~~~~~  331 (389)
                      ......  ....+..++|+|||++|++++. ++.|.+|+  ..+|+.
T Consensus       268 ~~~~~~--~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         268 KEGFQP--TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEEEEE--CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EEEEeC--CCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            332211  1123678999999999887754 57899985  456654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=1.6e-17  Score=141.17  Aligned_cols=289  Identities=10%  Similarity=-0.047  Sum_probs=190.4

Q ss_pred             ccCcEEEEEEcCCCCeE--E-EEecCC--cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec----------CC
Q 016458           66 HAGKVYSLDWTSERNRI--V-SASQDG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LD  130 (389)
Q Consensus        66 h~~~v~~~~~~~~~~~l--~-~~~~dg--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d  130 (389)
                      +.++...++..++++..  + ++..+|  .|.+||..+++.+..+..+..+  .++|+|+|+.|++.+          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            45555666677888753  2 233444  4667799999999888877654  589999999998754          36


Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeecccc-------cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccC
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHK-------GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS  203 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  203 (389)
                      +.|.+||..+.+       ....+..+.       .....++|+|+|..++++...++.+.+||+.+++....+.     
T Consensus        96 ~~v~v~D~~t~~-------~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~-----  163 (368)
T d1mdah_          96 DYVEVFDPVTFL-------PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTK-----  163 (368)
T ss_dssp             EEEEEECTTTCC-------EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEE-----
T ss_pred             CeEEEEECCCCc-------EeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEee-----
Confidence            789999998754       333332221       1234589999995544555578999999999999888773     


Q ss_pred             CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeE-----EeeeccceEEEEEecCCCEEEEEecCCeEEEEE
Q 016458          204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-----FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (389)
Q Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (389)
                      .+....    +.|.....++..+.||.+.+++..........     ...+...+....+.+++..+.+.  ++.+.+++
T Consensus       164 ~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~  237 (368)
T d1mdah_         164 SASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGD  237 (368)
T ss_dssp             CSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEE
T ss_pred             ccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEe
Confidence            222221    22224567777888999999988765332221     12233445567777777655543  45667777


Q ss_pred             CCCCceeeEeeccCCC-------CCCCCeeEEEeCCCCCEEEEEecCC---------cEEEEEcccceEEEeecCcCCCC
Q 016458          279 IRTGHQLQVYYQQHGE-------NEIPHVTSIAFSISGRLLFAGYSNG---------DCYVWDTLLAKVVLNLGSLQNSH  342 (389)
Q Consensus       279 ~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~  342 (389)
                      +..+............       ........+++++++..+++...++         .|.+||..+++.+..+     .+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~-----~~  312 (368)
T d1mdah_         238 IPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-----SN  312 (368)
T ss_dssp             CCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC-----EE
T ss_pred             ecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEe-----cC
Confidence            6655443322111100       0001134578899988776654332         5899999999988877     24


Q ss_pred             CCCeeEEEECCCCCe--EEeeeCCCeeEEeecceecccCcccC
Q 016458          343 EGRITCLGLSADGSA--LCTGSWDTNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       343 ~~~v~~~~~~~~~~~--l~~~~~dg~i~i~~~~W~~~~~~~~~  383 (389)
                      ...+.+++|+|||+.  ++++..|+.|++    ||..+|+...
T Consensus       313 ~~~~~~~a~spDG~~~ly~s~~~~~~v~v----~D~~tgk~~~  351 (368)
T d1mdah_         313 GHDSDAIIAAQDGASDNYANSAGTEVLDI----YDAASDQDQS  351 (368)
T ss_dssp             EEEECEEEECCSSSCEEEEEETTTTEEEE----EESSSCEEEE
T ss_pred             CCceeEEEECCCCCEEEEEEeCCCCeEEE----EECCCCCEEE
Confidence            467899999999973  456677899999    9999998754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=1.1e-16  Score=135.77  Aligned_cols=263  Identities=10%  Similarity=-0.018  Sum_probs=177.2

Q ss_pred             ccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEe----------cCCcEEEEeCCCCCeeEEEeeCCCc-------EE
Q 016458           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLPCAW-------VM  113 (389)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~~~~-------v~  113 (389)
                      .+++...+.+.++.++..+  .++|+|||+.|++++          .|+.|.+||..+++.+..+..+...       ..
T Consensus        50 ~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~  127 (368)
T d1mdah_          50 VSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH  127 (368)
T ss_dssp             EEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT
T ss_pred             EEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCcc
Confidence            4467777888887777765  589999999888764          3678999999999999888765432       34


Q ss_pred             EEEECCCCcEEEEec-CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe
Q 016458          114 TCAFSPTGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL  192 (389)
Q Consensus       114 ~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  192 (389)
                      .++|+|||++++++. .++.+.+||+.+.+       .......+...    .+.+.+...+++.+.||.+.++++....
T Consensus       128 ~~a~SpDGk~l~va~~~~~~v~~~d~~~~~-------~~~~~~~~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~~~  196 (368)
T d1mdah_         128 IIGNCASSACLLFFLFGSSAAAGLSVPGAS-------DDQLTKSASCF----HIHPGAAATHYLGSCPASLAASDLAAAP  196 (368)
T ss_dssp             SEEECTTSSCEEEEECSSSCEEEEEETTTE-------EEEEEECSSCC----CCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECCCCc-------EeEEeeccCcc----eEccCCCceEEEEcCCCCEEEEEecCCc
Confidence            689999999998775 57999999998754       34444333222    1233445678888899999999887654


Q ss_pred             eEEEecC-cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE--e----------eeccceEEEEEe
Q 016458          193 RTSVFGG-EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--H----------GHEGDVNTVKFF  259 (389)
Q Consensus       193 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~----------~~~~~i~~~~~~  259 (389)
                      ....... .....+...+....+.+ ++..+.+  .++.+.+++..... .....  .          ........++++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~  272 (368)
T d1mdah_         197 AAAGIVGAQCTGAQNCSSQAAQANY-PGMLVWA--VASSILQGDIPAAG-ATMKAAIDGNESGRKADNFRSAGFQMVAKL  272 (368)
T ss_dssp             CCCEECCCCSCTTSCBCSCCEEETT-TTEEEEC--BSSCCEEEECCSSC-CEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred             eeeeeeecccccccccceeeccccc-CcEEEEe--cCCCEEEEeecCCc-eEEEeecccccceeeeeeecCCCceeEEEc
Confidence            3332211 11123334445556665 4444433  34566666665431 11110  0          011223458899


Q ss_pred             cCCCEEEEEecC---------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-E-EEEEecCCcEEEEEccc
Q 016458          260 PDGNRFGTGSDD---------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-L-LFAGYSNGDCYVWDTLL  328 (389)
Q Consensus       260 ~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~-l~~~~~dg~i~i~d~~~  328 (389)
                      |++..+++...+         ..|.+||..+++.+..+....      .+..++|+|||+ + ++++..++.|++||..+
T Consensus       273 ~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~------~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t  346 (368)
T d1mdah_         273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH------DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE------EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             CCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCC------ceeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            998887765432         359999999998887765432      378999999997 3 45566789999999999


Q ss_pred             ceEEEeec
Q 016458          329 AKVVLNLG  336 (389)
Q Consensus       329 ~~~~~~~~  336 (389)
                      ++.+..+.
T Consensus       347 gk~~~~i~  354 (368)
T d1mdah_         347 DQDQSSVE  354 (368)
T ss_dssp             CEEEEECC
T ss_pred             CCEEEEEE
Confidence            99999884

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.69  E-value=1.5e-15  Score=127.92  Aligned_cols=269  Identities=12%  Similarity=0.047  Sum_probs=176.1

Q ss_pred             EEEEecCCcEEEEeCCCCCeeEEEeeC------------------------------CCcEEEEEECCCCcEEEEe-cCC
Q 016458           82 IVSASQDGRLIVWNALTSQKTHAIKLP------------------------------CAWVMTCAFSPTGQSVACG-GLD  130 (389)
Q Consensus        82 l~~~~~dg~v~iw~~~~~~~~~~~~~~------------------------------~~~v~~~~~~~~~~~l~~~-~~d  130 (389)
                      +++++.+|.|++|++.+++.+..+...                              .........+|||++|++. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            667888999999999999888776431                              1224445567899998665 568


Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeec-ccccceEEEEEeeCCCcEEEEeeCCCe------------------EEEEeCCCC
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGDQT------------------CVLWDITTG  191 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~------------------i~iwd~~~~  191 (389)
                      +.|.++|+.+.+       ....+. .+...+..++|+|++....+++..+..                  +..+|..+.
T Consensus        94 ~rVavIDl~t~k-------~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~  166 (441)
T d1qnia2          94 TRVARIRLDIMK-------TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM  166 (441)
T ss_dssp             TEEEEEETTTTE-------EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC
T ss_pred             CEEEEEECCCCc-------EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc
Confidence            899999998754       333332 355678899999998554444433333                  355788887


Q ss_pred             eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC-----------------------------------------Cc
Q 016458          192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----------------------------------------ST  230 (389)
Q Consensus       192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------------------------------------g~  230 (389)
                      +....+.      .......+.++| +++++++++.+                                         +.
T Consensus       167 ~v~~qI~------v~~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v  239 (441)
T d1qnia2         167 DVAWQVI------VDGNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKV  239 (441)
T ss_dssp             SEEEEEE------ESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred             eeeEEEe------cCCCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCc
Confidence            7766652      234577888998 66666655433                                         23


Q ss_pred             eEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEE-EEecCCeEEEEECCCCcee--------eEeeccCCCCCCCCee
Q 016458          231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG-TGSDDGTCRLFDIRTGHQL--------QVYYQQHGENEIPHVT  301 (389)
Q Consensus       231 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~--------~~~~~~~~~~~~~~i~  301 (389)
                      +.+++.... ..+..+.... ....+.++|||++++ ++..+++|.+||+.+....        ..+...  ....-...
T Consensus       240 ~vvd~~~~~-~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~--~~~glgpl  315 (441)
T d1qnia2         240 PVVDGRGES-EFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAE--PELGLGPL  315 (441)
T ss_dssp             CEEECSSSC-SSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEEC--CBCCSCEE
T ss_pred             EEEEcccCC-ceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEee--cccccCcc
Confidence            333333322 4455555443 357899999999875 4668999999998652211        111110  11111245


Q ss_pred             EEEeCCCCCEEEEEecCCcEEEEEcccc----------eEEEeec-CcCCCCCCCeeEEEECCCCCeEEee---eCCCee
Q 016458          302 SIAFSISGRLLFAGYSNGDCYVWDTLLA----------KVVLNLG-SLQNSHEGRITCLGLSADGSALCTG---SWDTNL  367 (389)
Q Consensus       302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i  367 (389)
                      ..+|+++|+.+.+...|..|..|++...          ..+..+. ....+|...+.+.+++|||++|+++   +.|..+
T Consensus       316 h~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~  395 (441)
T d1qnia2         316 HTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFL  395 (441)
T ss_dssp             EEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSC
T ss_pred             cceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCc
Confidence            6789999988888889999999997421          1222221 1124777778888999999999999   555544


Q ss_pred             E
Q 016458          368 K  368 (389)
Q Consensus       368 ~  368 (389)
                      .
T Consensus       396 ~  396 (441)
T d1qnia2         396 P  396 (441)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.69  E-value=1.1e-14  Score=127.71  Aligned_cols=319  Identities=10%  Similarity=-0.010  Sum_probs=172.8

Q ss_pred             CCCcccCCCcceeee-----ecccccCcEEEEEEcCCCCeEEEEec---------CCcEEEEeCCCCCeeEEEeeCCCcE
Q 016458           47 RAPVSFGPTDLVCCR-----TLQGHAGKVYSLDWTSERNRIVSASQ---------DGRLIVWNALTSQKTHAIKLPCAWV  112 (389)
Q Consensus        47 ~~~~~~~~~~~~~~~-----~l~~h~~~v~~~~~~~~~~~l~~~~~---------dg~v~iw~~~~~~~~~~~~~~~~~v  112 (389)
                      .....|++...+...     +|..|...|.++.|||||++|+.++.         ++.+.+||+.+++. ..+..+...+
T Consensus        36 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~  114 (470)
T d2bgra1          36 NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNT  114 (470)
T ss_dssp             SCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTE
T ss_pred             CcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccc
Confidence            334566666665544     45566788999999999999998753         56789999998764 4567777889


Q ss_pred             EEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC--cceeeecc---------cccceEEEEEeeCCCcEEEEeeCC-
Q 016458          113 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL--PVSRMLSG---------HKGYVSCCQYVPDEDTHLITSSGD-  180 (389)
Q Consensus       113 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~d-  180 (389)
                      ....|||||+.+|... ++.+.+|+..++.......  .....+.+         ..+....+.|+|+| +.|+....| 
T Consensus       115 ~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDG-k~ia~~~~d~  192 (470)
T d2bgra1         115 QWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFND  192 (470)
T ss_dssp             EEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEEC
T ss_pred             cccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCC-CccceeEecC
Confidence            9999999999999864 6789999988754211000  00000111         12334567899998 456655433 


Q ss_pred             CeEEEEeCC-----------------------------------CCeeEEEecC------cccCCCCCCeeEEEeeCCCC
Q 016458          181 QTCVLWDIT-----------------------------------TGLRTSVFGG------EFQSGHTADVLSVSISGSNS  219 (389)
Q Consensus       181 g~i~iwd~~-----------------------------------~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~  219 (389)
                      ..+..|.+.                                   .+........      .........+..+.|.+ ++
T Consensus       193 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~  271 (470)
T d2bgra1         193 TEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QE  271 (470)
T ss_dssp             TTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TT
T ss_pred             CcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcC-CC
Confidence            324333321                                   1100000000      00001112345677776 44


Q ss_pred             cEEEEe-eCCC---ceEEEe--CCCCCcceeEE------ee-eccc-----eEEEEEecC--CCEEEEEecCCeEEEE--
Q 016458          220 RMFVSG-SCDS---TARLWD--TRVASRAVRTF------HG-HEGD-----VNTVKFFPD--GNRFGTGSDDGTCRLF--  277 (389)
Q Consensus       220 ~~l~~~-~~dg---~i~i~d--~~~~~~~~~~~------~~-~~~~-----i~~~~~~~~--~~~l~~~~~dg~i~i~--  277 (389)
                      .+++.. ...+   .+.+++  ..++ . ...+      .. ....     .....+.++  +.+++.+..||...+|  
T Consensus       272 ~~~~~~~~r~~~~~~~~~~~~d~~tg-~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~  349 (470)
T d2bgra1         272 RISLQWLRRIQNYSVMDICDYDESSG-R-WNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF  349 (470)
T ss_dssp             EEEEEEEESSTTEEEEEEEEEETTTT-E-EEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred             ceeEEEeeccCCceEEEEEEecCCCC-c-EEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEE
Confidence            444432 2222   233343  3332 1 1110      00 0000     112234443  3345666777765555  


Q ss_pred             ECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEE-EEEecCC----c--EEEEEcccceEEEeecCcCCCCCCCeeEEE
Q 016458          278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGYSNG----D--CYVWDTLLAKVVLNLGSLQNSHEGRITCLG  350 (389)
Q Consensus       278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg----~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  350 (389)
                      +...+ ....+.....     .+..+ ++++++.+ ++++.++    .  |+-.++..+.....+......|...+.+++
T Consensus       350 ~~~g~-~~~~lt~g~~-----~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~  422 (470)
T d2bgra1         350 QIDKK-DCTFITKGTW-----EVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVS  422 (470)
T ss_dssp             ETTCS-CCEESCCSSS-----CEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEE
T ss_pred             eccCC-ceeeeccCCe-----eEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEE
Confidence            54433 3333322222     25555 33444443 3443322    2  333344544444444333357888899999


Q ss_pred             ECCCCCeEE---eeeCCCeeEEeecceecccCccc
Q 016458          351 LSADGSALC---TGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       351 ~~~~~~~l~---~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      |||||++++   ++...-.+.+    |+..+|+.+
T Consensus       423 fSpdgky~~~~~s~~~~P~~~l----~~~~~g~~v  453 (470)
T d2bgra1         423 FSKEAKYYQLRCSGPGLPLYTL----HSSVNDKGL  453 (470)
T ss_dssp             ECTTSSEEEEEECSBSSCEEEE----EETTTTEEE
T ss_pred             ECCCCCEEEEEecCCCCCeEEE----EECCCCCEE
Confidence            999999987   4444556788    998888764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=3.2e-11  Score=96.80  Aligned_cols=238  Identities=14%  Similarity=0.116  Sum_probs=147.1

Q ss_pred             cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCC---cEEEEeCCCCCCCCCCCcceeeecccccceEEEEE
Q 016458           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS---VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY  166 (389)
Q Consensus        90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (389)
                      .|.|.|.. |.....+......+..-+|||||+.||......   .+.+.+.....        ...+..+........|
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~   90 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--------VRQVASFPRHNGAPAF   90 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--------EEEEECCSSCEEEEEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--------eeEEeeeeccccccee
Confidence            47777865 444444444556788999999999998764432   35555655432        3445556778888999


Q ss_pred             eeCCCcEEEEeeCCCeEEEE--eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCccee
Q 016458          167 VPDEDTHLITSSGDQTCVLW--DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR  244 (389)
Q Consensus       167 ~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  244 (389)
                      +|++..+++....++...++  ..........      ...........+++.....+++...+|...+|..........
T Consensus        91 spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~  164 (269)
T d2hqsa1          91 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQV------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ  164 (269)
T ss_dssp             CTTSSEEEEEECTTSSCEEEEEETTTCCEEEC------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE
T ss_pred             cCCCCeeeEeeecCCccceeecccccccceee------eeccccccccccccccccceecccccCCceEeeeecccccce
Confidence            99996655555545443333  3333332222      234444455566765555666666666555554433333444


Q ss_pred             EEeeeccceEEEEEecCCCEEEEEecCC---eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC---
Q 016458          245 TFHGHEGDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---  318 (389)
Q Consensus       245 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---  318 (389)
                      ....+........|+|+++.++..+.++   .+.+.+...+..  .......     ......|+|||+.|+..+..   
T Consensus       165 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~-----~~~~p~~SPDG~~i~f~s~~~~~  237 (269)
T d2hqsa1         165 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-----LDETPSLAPNGTMVIYSSSQGMG  237 (269)
T ss_dssp             ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-----SCEEEEECTTSSEEEEEEEETTE
T ss_pred             eeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCc-----cccceEECCCCCEEEEEEcCCCC
Confidence            4455566677889999999988776544   345555554432  2222221     25678899999988765443   


Q ss_pred             CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458          319 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (389)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (389)
                      ..|+++++..+... .+    ....+.+...+|+|-
T Consensus       238 ~~l~~~~~dg~~~~-~l----t~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         238 SVLNLVSTDGRFKA-RL----PATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEEEEETTSCCEE-EC----CCSSSEEEEEEECCC
T ss_pred             cEEEEEECCCCCEE-EE----eCCCCcEEeEEeCCC
Confidence            36889999776554 44    345667888999983

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.51  E-value=1.6e-10  Score=94.27  Aligned_cols=249  Identities=10%  Similarity=0.064  Sum_probs=166.4

Q ss_pred             ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (389)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (389)
                      .+.+..+.... .+..++++|||+++++...+++|..|+.. ++ ...+......+.+++|+++|+++++...++.+..+
T Consensus        18 ~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~   94 (302)
T d2p4oa1          18 AKIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV   94 (302)
T ss_dssp             EEEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             ccEEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEE
Confidence            34455554322 48899999999999999999999888854 33 33445555779999999999999998888888888


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc-----cCCCCCCeeE
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF-----QSGHTADVLS  211 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~v~~  211 (389)
                      +......   .. ..............+.+.+++ +++++.+.++.+..+|...+..........     ..........
T Consensus        95 ~~~~~~~---~~-~~~~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng  169 (302)
T d2p4oa1          95 SLVKSDG---TV-ETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG  169 (302)
T ss_dssp             EEECTTS---CE-EEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred             Eeccccc---ce-eeccccCCccccceeEEccCC-CEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence            8765321   11 111112234567889999987 778888888999999988875443332110     0112233456


Q ss_pred             EEeeCCCCcEEEEeeCCCceEEEeCCCCCcc-eeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeec
Q 016458          212 VSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ  290 (389)
Q Consensus       212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  290 (389)
                      +.+.  .+.++++.+..+.|..++....... .............++++++|+++++...++.|..++... +.......
T Consensus       170 i~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~~  246 (302)
T d2p4oa1         170 LKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQA  246 (302)
T ss_dssp             EEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEECG
T ss_pred             cccc--CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEec
Confidence            6665  4567777788889998887754222 112222344567899999999888888899999998653 33222222


Q ss_pred             cCCCCCCCCeeEEEe---CCCCCEEEEEecCC
Q 016458          291 QHGENEIPHVTSIAF---SISGRLLFAGYSNG  319 (389)
Q Consensus       291 ~~~~~~~~~i~~~~~---~~~~~~l~~~~~dg  319 (389)
                      ..   .....++++|   ++|++.|++++..|
T Consensus       247 ~~---~~~~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         247 EQ---GVIGSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             GG---TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CC---CCCCceEEEEcCCCCCCCEEEEECCCC
Confidence            11   1123789999   67888888776543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.50  E-value=3.5e-13  Score=113.44  Aligned_cols=238  Identities=10%  Similarity=-0.002  Sum_probs=152.7

Q ss_pred             cccCcEEEEEEcCCCCeEEEE-ecCCcEEEEeCCCCCeeEEEeeC-CCcEEEEEECCCCcE--EEEecCCC---------
Q 016458           65 GHAGKVYSLDWTSERNRIVSA-SQDGRLIVWNALTSQKTHAIKLP-CAWVMTCAFSPTGQS--VACGGLDS---------  131 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~~dg---------  131 (389)
                      .|.-......++|||++|++. ..+++|.++|+.+++....+..+ ...+..++|+|+++.  ++..+.+.         
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence            455667777788999988665 46789999999999988877754 467899999999984  44444332         


Q ss_pred             --------cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC------------------------
Q 016458          132 --------VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG------------------------  179 (389)
Q Consensus       132 --------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------------------  179 (389)
                              .+..+|..+..       ....... .+....+.++|+|. ++++++.                        
T Consensus       149 ~~~~~~~~~~~~iD~~t~~-------v~~qI~v-~~~p~~v~~spdGk-~a~vt~~nse~~~~id~~t~~~~d~i~v~n~  219 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMD-------VAWQVIV-DGNLDNTDADYTGK-YATSTCYNSERAVDLAGTMRNDRDWVVVFNV  219 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCS-------EEEEEEE-SSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCSSBCEEEEEEH
T ss_pred             cccccccceEEeecCccce-------eeEEEec-CCCccceEECCCCC-EEEEEecCCCceEEEeccCcceEEEEEeCCc
Confidence                    12335554422       2222222 23466788899884 4444432                        


Q ss_pred             -----------------CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc
Q 016458          180 -----------------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA  242 (389)
Q Consensus       180 -----------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  242 (389)
                                       ++.+.+++.........+     .. ......+.++|+...+++++..+++|.+||+.+..+.
T Consensus       220 p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~I-----Pv-gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~  293 (441)
T d1qnia2         220 ERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYI-----PV-PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDL  293 (441)
T ss_dssp             HHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEE-----CC-BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHH
T ss_pred             cceEEEecCCCEEEeCCCCcEEEEcccCCceEEEE-----eC-CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhH
Confidence                             234444444444444444     22 2346778999944445567888999999998753211


Q ss_pred             -------eeEEeeec---cceEEEEEecCCCEEEEEecCCeEEEEECCC----------CceeeEeeccCCCCCCCCeeE
Q 016458          243 -------VRTFHGHE---GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT----------GHQLQVYYQQHGENEIPHVTS  302 (389)
Q Consensus       243 -------~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~~~~~~i~~  302 (389)
                             ...+.++.   -.....+|+++|..+.+...|..|..|++..          ......+..+....|...+.+
T Consensus       294 ~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~  373 (441)
T d1qnia2         294 FEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLT  373 (441)
T ss_dssp             TTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTT
T ss_pred             hhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccc
Confidence                   11111111   1245568999998888999999999999742          123334444444455555677


Q ss_pred             EEeCCCCCEEEEEec
Q 016458          303 IAFSISGRLLFAGYS  317 (389)
Q Consensus       303 ~~~~~~~~~l~~~~~  317 (389)
                      .+++|||+||++++.
T Consensus       374 ~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         374 ESRDADGKWLVVLSK  388 (441)
T ss_dssp             TSTTCCCCEEEEEES
T ss_pred             cccCCCCcEEEecCc
Confidence            789999999999943

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.48  E-value=1.4e-11  Score=107.53  Aligned_cols=144  Identities=13%  Similarity=0.087  Sum_probs=105.3

Q ss_pred             EEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeC-----CCcEEEEEECCCCcEEEEecC---------CCcEEEEe
Q 016458           72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP-----CAWVMTCAFSPTGQSVACGGL---------DSVCSIFN  137 (389)
Q Consensus        72 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~---------dg~i~vw~  137 (389)
                      .+.|.++++++..  .|+.+.+||..+++....+..+     ...|.++.|||||++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4779999887764  5778999999999987665543     367999999999999998743         56789999


Q ss_pred             CCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCccc-------------CC
Q 016458          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ-------------SG  204 (389)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------------~~  204 (389)
                      +.++.        ...+..+...+..+.|+|+| +.++. ..++.+.+|+..++...........             ..
T Consensus        99 ~~~~~--------~~~l~~~~~~~~~~~~SPDG-~~ia~-~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~  168 (470)
T d2bgra1          99 LNKRQ--------LITEERIPNNTQWVTWSPVG-HKLAY-VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (470)
T ss_dssp             TTTTE--------ECCSSCCCTTEEEEEECSST-TCEEE-EETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             CCCCc--------ccccccCCccccccccccCc-ceeeE-eecccceEEECCCCceeeeeeccCCCcccccccceeeeee
Confidence            98754        34566788889999999998 45665 4567899999998876654321100             01


Q ss_pred             CCCCeeEEEeeCCCCcEEEEeeCC
Q 016458          205 HTADVLSVSISGSNSRMFVSGSCD  228 (389)
Q Consensus       205 ~~~~v~~~~~~~~~~~~l~~~~~d  228 (389)
                      ..+....+.|+| +++.|+....|
T Consensus       169 ~~~~~~~~~wSP-DGk~ia~~~~d  191 (470)
T d2bgra1         169 VFSAYSALWWSP-NGTFLAYAQFN  191 (470)
T ss_dssp             TSSSSBCEEECT-TSSEEEEEEEE
T ss_pred             ecCCccccEECC-CCCccceeEec
Confidence            223346688999 77777776554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.48  E-value=2.9e-11  Score=96.38  Aligned_cols=238  Identities=10%  Similarity=-0.017  Sum_probs=151.0

Q ss_pred             CcEEEEEEcCCCCeEEEE-ecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCC
Q 016458           68 GKVYSLDWTSERNRIVSA-SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG  146 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  146 (389)
                      -.-..|+++++|+..++. +..+.+..++...................++++++++++++...++.+++++-....    
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~----   89 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ----   89 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC----
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccce----
Confidence            346899999999966654 455777777654443322222222346788999999988877777777665544321    


Q ss_pred             CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee
Q 016458          147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS  226 (389)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  226 (389)
                         .... ........++++.+++ +++++-..+..+..++..........     .........+++.+ +++++++..
T Consensus        90 ---~~~~-~~~~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~~i~~~~-~g~~~v~~~  158 (260)
T d1rwia_          90 ---TVLP-FDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLP-----FTGLNDPDGVAVDN-SGNVYVTDT  158 (260)
T ss_dssp             ---EECC-CCSCCSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSSCEECC-----CCSCCSCCEEEECT-TCCEEEEEG
T ss_pred             ---eeee-eeeeeecccccccccc-eeEeeccccccccccccccceeeeee-----ecccCCcceeeecC-CCCEeeecc
Confidence               1111 1122456789999987 56666666777877776654433322     22234567889998 778888888


Q ss_pred             CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeC
Q 016458          227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  306 (389)
Q Consensus       227 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  306 (389)
                      .++.|..+|..... ........-.....+++.++|+++++....+.|..++..... ...+...    .......|+++
T Consensus       159 ~~~~i~~~d~~~~~-~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~----~~~~P~~i~~d  232 (260)
T d1rwia_         159 DNNRVVKLEAESNN-QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFT----GLNTPLAVAVD  232 (260)
T ss_dssp             GGTEEEEECTTTCC-EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCC----SCCCEEEEEEC
T ss_pred             ccccccccccccce-eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccC----CCCCeEEEEEe
Confidence            88889999977542 221112334557889999999988888888899988865433 2222111    11236889999


Q ss_pred             CCCCEEEEEecCCcEEEEEc
Q 016458          307 ISGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       307 ~~~~~l~~~~~dg~i~i~d~  326 (389)
                      ++|+++++-..+++|+.++.
T Consensus       233 ~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         233 SDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             TTCCEEEEEGGGTEEEEECC
T ss_pred             CCCCEEEEECCCCEEEEEeC
Confidence            99987776666666665553

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.47  E-value=4.2e-11  Score=100.40  Aligned_cols=289  Identities=10%  Similarity=0.070  Sum_probs=158.5

Q ss_pred             EEEEec--CCcEEEEeC--CCCCee--EEEee-CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeee
Q 016458           82 IVSASQ--DGRLIVWNA--LTSQKT--HAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML  154 (389)
Q Consensus        82 l~~~~~--dg~v~iw~~--~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  154 (389)
                      |++|+.  .+.|.++.+  ++++..  ..... ....+..|+|+|++++|+++.. +.+..|.+....    .. .....
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~----~~-~~~~~   78 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPT----EI-VHEAS   78 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETT----EE-EEEEE
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCC----Ce-EEEee
Confidence            555643  456765544  343322  22222 3345677999999999988764 567888776422    01 11111


Q ss_pred             cccccceEEEEEeeCCCcEEEEee--CCCeEEEEeCCCC------------eeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458          155 SGHKGYVSCCQYVPDEDTHLITSS--GDQTCVLWDITTG------------LRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (389)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (389)
                      .........+.+++++...+++..  ..+.|..+.+...            .................+.++.|+| +++
T Consensus        79 ~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP-dG~  157 (365)
T d1jofa_          79 HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TET  157 (365)
T ss_dssp             EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSS
T ss_pred             ecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECC-CCC
Confidence            111223345566676633223221  2445554443221            0110000000122334578999999 666


Q ss_pred             EEEEeeC-CCceEEEeCCCCCccee--EEe--eeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceeeEeeccC--
Q 016458          221 MFVSGSC-DSTARLWDTRVASRAVR--TFH--GHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQH--  292 (389)
Q Consensus       221 ~l~~~~~-dg~i~i~d~~~~~~~~~--~~~--~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~--  292 (389)
                      ++++++. ...|.+|+.........  ...  ......+.++|+|+++++++.. .++.|.+|++.............  
T Consensus       158 ~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~  237 (365)
T d1jofa_         158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP  237 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred             EEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeec
Confidence            6665543 45788887664422221  111  1235688999999999886655 67899999987665332221100  


Q ss_pred             ------------CCCCCCCeeEEEeCCCCCEEEEEec------CCcEEEEEcccceEEEeecCc--CCCCCCCeeEEEEC
Q 016458          293 ------------GENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTLLAKVVLNLGSL--QNSHEGRITCLGLS  352 (389)
Q Consensus       293 ------------~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~--~~~~~~~v~~~~~~  352 (389)
                                  ..........+.++|+|++|+++..      .+.|..|++.....+......  .........+++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~  317 (365)
T d1jofa_         238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC  317 (365)
T ss_dssp             SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC
T ss_pred             cccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEec
Confidence                        0011113567899999999988743      123777776542221111000  02233456789999


Q ss_pred             C-CCCeEEee-eCCCeeEEeecceecccCcc
Q 016458          353 A-DGSALCTG-SWDTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       353 ~-~~~~l~~~-~~dg~i~i~~~~W~~~~~~~  381 (389)
                      | +|++|+++ ..++.|.+    |++....+
T Consensus       318 p~~G~~l~va~~~s~~v~v----~~~~~~~l  344 (365)
T d1jofa_         318 PWSDEWMAITDDQEGWLEI----YRWKDEFL  344 (365)
T ss_dssp             TTCTTEEEEECSSSCEEEE----EEEETTEE
T ss_pred             CCCCCEEEEEeCCCCeEEE----EEEeCCcC
Confidence            8 89977666 46799999    98876543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.45  E-value=1.9e-10  Score=96.36  Aligned_cols=263  Identities=8%  Similarity=-0.019  Sum_probs=151.2

Q ss_pred             cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe--eCCCcEEEEEECCCCcEEE--Eec-CCCcEEEEeCC
Q 016458           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQSVA--CGG-LDSVCSIFNLN  139 (389)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~--~~~-~dg~i~vw~~~  139 (389)
                      .....+.-|+|+|+++.|.++.. +.+..|.+..........  ........++++++++.++  ++. ..+.|..+.+.
T Consensus        37 ~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~  115 (365)
T d1jofa_          37 PQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             CTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             cCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence            34556778999999999988765 568888765433222221  2223455678888888543  332 24556555443


Q ss_pred             CCCCC--------CCCC--cceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCe
Q 016458          140 SPTDK--------DGNL--PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV  209 (389)
Q Consensus       140 ~~~~~--------~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  209 (389)
                      .....        ....  ............+.++.|+|+|..++++......|.+|+......................
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP  195 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence            21100        0000  0000111122346789999998544544455678889886544322222111112345678


Q ss_pred             eEEEeeCCCCcEE-EEeeCCCceEEEeCCCCCcce-eEEee-----------------eccceEEEEEecCCCEEEEEec
Q 016458          210 LSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAV-RTFHG-----------------HEGDVNTVKFFPDGNRFGTGSD  270 (389)
Q Consensus       210 ~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~-~~~~~-----------------~~~~i~~~~~~~~~~~l~~~~~  270 (389)
                      ..++|+| +++++ ++...++.|.+|+........ .....                 +......+.++|+|++|+++..
T Consensus       196 r~i~f~p-dg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr  274 (365)
T d1jofa_         196 RWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             EEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             EEEEECC-CCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcc
Confidence            9999999 55555 556668899999987652221 11110                 1123457899999999987743


Q ss_pred             ------CCeEEEEECCCCceeeEe-eccCCCCCCCCeeEEEeCC-CCCEEEEEe-cCCcEEEEEcccc
Q 016458          271 ------DGTCRLFDIRTGHQLQVY-YQQHGENEIPHVTSIAFSI-SGRLLFAGY-SNGDCYVWDTLLA  329 (389)
Q Consensus       271 ------dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~  329 (389)
                            .+.|..|++.....+... ..............++++| +|++|+++. .++.|.+|++...
T Consensus       275 ~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence                  234777887654333221 1111111222357799998 899887764 5688999987644

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.44  E-value=9.5e-11  Score=93.37  Aligned_cols=234  Identities=10%  Similarity=0.049  Sum_probs=149.5

Q ss_pred             cEEEEEECCCCcEEEEe-cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          111 WVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       111 ~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                      ....+++.++|+..++. +..+.+..++......      ...... -......+++.+++ .++++....+.+++++-.
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~------~~~~~~-~~~~p~gvav~~~g-~i~v~d~~~~~i~~~~~~   86 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT------TVLPFN-GLYQPQGLAVDGAG-TVYVTDFNNRVVTLAAGS   86 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CE------EECCCC-SCCSCCCEEECTTC-CEEEEETTTEEEEECTTC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceE------EEeccC-CccCceEEEEcCCC-CEEEeeeeeceeeeeeec
Confidence            46899999999976654 4557777776654220      111111 12345678888887 667776666677766655


Q ss_pred             CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe
Q 016458          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  269 (389)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  269 (389)
                      +.......      ........+++.+ +++++++-..+..+..++............ .......++++|+++++++..
T Consensus        87 ~~~~~~~~------~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g~~~v~~~  158 (260)
T d1rwia_          87 NNQTVLPF------DGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFT-GLNDPDGVAVDNSGNVYVTDT  158 (260)
T ss_dssp             SCCEECCC------CSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCC-SCCSCCEEEECTTCCEEEEEG
T ss_pred             cceeeeee------eeeeecccccccc-cceeEeeccccccccccccccceeeeeeec-ccCCcceeeecCCCCEeeecc
Confidence            54443322      2335678899988 777877766667777777654322111111 223457899999999888888


Q ss_pred             cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEE
Q 016458          270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  349 (389)
Q Consensus       270 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  349 (389)
                      .++.|..+|............     .......++++++|+++++...++.|..++....... .+.   ...-.....|
T Consensus       159 ~~~~i~~~d~~~~~~~~~~~~-----~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~---~~~~~~P~~i  229 (260)
T d1rwia_         159 DNNRVVKLEAESNNQVVLPFT-----DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLP---FTGLNTPLAV  229 (260)
T ss_dssp             GGTEEEEECTTTCCEEECCCS-----SCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECC---CCSCCCEEEE
T ss_pred             ccccccccccccceeeeeecc-----ccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEc---cCCCCCeEEE
Confidence            889999999775443322111     1223688999999998888777888888886544322 221   2333567899


Q ss_pred             EECCCCCeEEeeeCCCeeEE
Q 016458          350 GLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       350 ~~~~~~~~l~~~~~dg~i~i  369 (389)
                      +++++|.++++-..++.|+.
T Consensus       230 ~~d~~g~l~vad~~~~rI~~  249 (260)
T d1rwia_         230 AVDSDRTVYVADRGNDRVVK  249 (260)
T ss_dssp             EECTTCCEEEEEGGGTEEEE
T ss_pred             EEeCCCCEEEEECCCCEEEE
Confidence            99999988777666666654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.44  E-value=1.3e-10  Score=94.80  Aligned_cols=233  Identities=10%  Similarity=0.038  Sum_probs=154.2

Q ss_pred             CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                      ..+..++++|+|+++++...+++|..|+...         ....+......+.+++|.+++ +++++...++.+..++..
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g---------~~~~~~~~~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG---------NQQIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC---------CEEEEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC---------CEEEEEcCCCCcceEEEcCCC-CeEEEecCCceEEEEEec
Confidence            3578899999999999999999988888654         233445556788999999998 678888888888887765


Q ss_pred             CC--eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee---------eccceEEEEE
Q 016458          190 TG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---------HEGDVNTVKF  258 (389)
Q Consensus       190 ~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~i~~~~~  258 (389)
                      ..  .......    .........+++.+ +++++++.+.++.+..+|.......+.....         .......+.+
T Consensus        98 ~~~~~~~~~~~----~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~  172 (302)
T d2p4oa1          98 KSDGTVETLLT----LPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR  172 (302)
T ss_dssp             CTTSCEEEEEE----CTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE
T ss_pred             ccccceeeccc----cCCccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccc
Confidence            43  2222211    23445678899998 7888888888888888887755222211111         1123456666


Q ss_pred             ecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE-EEeecC
Q 016458          259 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV-VLNLGS  337 (389)
Q Consensus       259 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~  337 (389)
                      +. +.++++.+..+.|..++..............   .......++++++|++.++...++.|..++...... +...  
T Consensus       173 ~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~--  246 (302)
T d2p4oa1         173 FG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV---EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQA--  246 (302)
T ss_dssp             ET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE---ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECG--
T ss_pred             cC-CceeeecCCCCeEEecccccccccccccccc---CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEec--
Confidence            53 3455666778899999877654332211100   011256799999999888888889999998754322 2222  


Q ss_pred             cCCCCCCCeeEEEE---CCCCCeEEeeeCCC
Q 016458          338 LQNSHEGRITCLGL---SADGSALCTGSWDT  365 (389)
Q Consensus       338 ~~~~~~~~v~~~~~---~~~~~~l~~~~~dg  365 (389)
                        ...-...++++|   ++|++.|+.++..|
T Consensus       247 --~~~~~~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         247 --EQGVIGSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             --GGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             --CCCCCCceEEEEcCCCCCCCEEEEECCCC
Confidence              223346789999   67888887665543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.43  E-value=1.2e-09  Score=89.27  Aligned_cols=243  Identities=8%  Similarity=0.042  Sum_probs=150.4

Q ss_pred             CcEEEEEECCCCcEEEEecC-------CCcEEEEeCCCCCCCCCCCcceeee----cccccceEEEEEeeCCCcEEEEee
Q 016458          110 AWVMTCAFSPTGQSVACGGL-------DSVCSIFNLNSPTDKDGNLPVSRML----SGHKGYVSCCQYVPDEDTHLITSS  178 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~  178 (389)
                      .....++|.++|+++++...       +|.|..||..++.       .....    ....+....+.|.+++ +.++++.
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~-------~~~~~~~~~~~~~g~P~Gl~~~~dg-~~l~vad   89 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK-------KTVICKPEVNGYGGIPAGCQCDRDA-NQLFVAD   89 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC-------EEEEECCEETTEECCEEEEEECSSS-SEEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCc-------EEEEECCccccCCCcceeEEEeCCC-CEEEEEE
Confidence            34567889999998776433       4668888877643       11111    1122346789999987 5666666


Q ss_pred             CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC---------------CCceEEEeCCCCCcce
Q 016458          179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---------------DSTARLWDTRVASRAV  243 (389)
Q Consensus       179 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~  243 (389)
                      ....|..++........... ......-.....+++.+ ++++.++-..               .|.|..++..  .. .
T Consensus        90 ~~~~i~~~~~~g~~~~~~~~-~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d--g~-~  164 (314)
T d1pjxa_          90 MRLGLLVVQTDGTFEEIAKK-DSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQ-M  164 (314)
T ss_dssp             TTTEEEEEETTSCEEECCSB-CTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SC-E
T ss_pred             CCCeEEEEeCCCcEEEEEec-cccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeec--Cc-e
Confidence            66778888977654332211 10001112357788988 7777776322               2334444433  22 2


Q ss_pred             eEEeeeccceEEEEEecCCC-----EEEEEecCCeEEEEECCCCceeeEeec--cCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458          244 RTFHGHEGDVNTVKFFPDGN-----RFGTGSDDGTCRLFDIRTGHQLQVYYQ--QHGENEIPHVTSIAFSISGRLLFAGY  316 (389)
Q Consensus       244 ~~~~~~~~~i~~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (389)
                      ..+...-...+.++|+|+++     ++++-+..+.|..||+.....+.....  ............+++..+|++.++..
T Consensus       165 ~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~  244 (314)
T d1pjxa_         165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW  244 (314)
T ss_dssp             EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred             eEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEc
Confidence            23333344567899999765     445556788999998765433322111  11111112256799999999888877


Q ss_pred             cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCe-EEeeeCCCeeEE
Q 016458          317 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA-LCTGSWDTNLKV  369 (389)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i  369 (389)
                      ..+.|.+||...+.....+    ......+++++|.||++. +++.+.+|.|..
T Consensus       245 ~~g~I~~~dp~~g~~~~~i----~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~  294 (314)
T d1pjxa_         245 GSSHIEVFGPDGGQPKMRI----RCPFEKPSNLHFKPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             TTTEEEEECTTCBSCSEEE----ECSSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCEEEEEeCCCCEEEEEE----ECCCCCEEEEEEeCCCCEEEEEECCCCcEEE
Confidence            8899999998877766665    344567899999999874 466666777755

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.40  E-value=1.5e-09  Score=87.23  Aligned_cols=242  Identities=16%  Similarity=0.166  Sum_probs=162.9

Q ss_pred             cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeec------ccccceEEEEEeeCCCcEEEE-eeCCCeE
Q 016458          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS------GHKGYVSCCQYVPDEDTHLIT-SSGDQTC  183 (389)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~-~~~dg~i  183 (389)
                      ....++++++++.+++-..++.|++||.+..        ....+.      +.......+.+.++....+++ .+.++.|
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~--------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i   95 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGR--------FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI   95 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSC--------EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCCC--------EEEEecccCCCcccccccccccccccccccceeccCCcccc
Confidence            3678999999998888777889999987641        111111      112234556666554444443 4456678


Q ss_pred             EEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe--eeccceEEEEEecC
Q 016458          184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPD  261 (389)
Q Consensus       184 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~  261 (389)
                      ..++.. +.....+.    .........+++.+ ++.++++....+.+.+++...  ..+..+.  .+......+++.++
T Consensus        96 ~~~~~~-g~~~~~~~----~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~g--~~~~~~g~~~~~~~~~~i~~d~~  167 (279)
T d1q7fa_          96 QIYNQY-GQFVRKFG----ATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNG--NVLHKFGCSKHLEFPNGVVVNDK  167 (279)
T ss_dssp             EEECTT-SCEEEEEC----TTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTS--CEEEEEECTTTCSSEEEEEECSS
T ss_pred             cccccc-ccceeecC----CCcccccceecccc-CCcEEEEeeccceeeEeccCC--ceeecccccccccccceeeeccc
Confidence            888764 45555442    23445678888887 777887777777888888652  4444442  24456788999999


Q ss_pred             CCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec-CCcEEEEEcccceEEEeecCcCC
Q 016458          262 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQN  340 (389)
Q Consensus       262 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~  340 (389)
                      ++.+++....+.|++||.. ++.+..+..   .........++++++|+.+++-.. ++.|.+|+. +++.+..+..  .
T Consensus       168 g~i~v~d~~~~~V~~~d~~-G~~~~~~g~---~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~--~  240 (279)
T d1q7fa_         168 QEIFISDNRAHCVKVFNYE-GQYLRQIGG---EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES--K  240 (279)
T ss_dssp             SEEEEEEGGGTEEEEEETT-CCEEEEESC---TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE--S
T ss_pred             eeEEeeeccccceeeeecC-Cceeeeecc---cccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeC--C
Confidence            9988888889999999965 555555532   222334789999999997766543 456999984 5776666532  2


Q ss_pred             CCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458          341 SHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA  380 (389)
Q Consensus       341 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~  380 (389)
                      ........|++.+||.++ +++.++.|++    |+....+
T Consensus       241 ~~~~~p~~vav~~dG~l~-V~~~n~~v~~----fr~~~~~  275 (279)
T d1q7fa_         241 VKHAQCFDVALMDDGSVV-LASKDYRLYI----YRYVQLA  275 (279)
T ss_dssp             SCCSCEEEEEEETTTEEE-EEETTTEEEE----EECSCCC
T ss_pred             CCCCCEeEEEEeCCCcEE-EEeCCCeEEE----EEeeeec
Confidence            233467899999999755 4567899999    8887653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.40  E-value=1.4e-09  Score=87.47  Aligned_cols=240  Identities=10%  Similarity=0.125  Sum_probs=161.5

Q ss_pred             cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC------CcEEEEEECCCC-cEEEE-ecCCCcEEEEeCCC
Q 016458           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC------AWVMTCAFSPTG-QSVAC-GGLDSVCSIFNLNS  140 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~------~~v~~~~~~~~~-~~l~~-~~~dg~i~vw~~~~  140 (389)
                      ....|+++++++.+++-..++.|++||.+ ++.+..+....      .....+++.++. ..+++ .+.++.|..++...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            46899999999988887788899999954 66666653211      134556655543 34433 34456777777553


Q ss_pred             CCCCCCCCcceeee-cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458          141 PTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (389)
Q Consensus       141 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (389)
                      .        ....+ .........+++.+++ .++++....+.+.+++.. ++.+..+..   ..+......+++.+ ++
T Consensus       103 ~--------~~~~~~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~-g~~~~~~g~---~~~~~~~~~i~~d~-~g  168 (279)
T d1q7fa_         103 Q--------FVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVLHKFGC---SKHLEFPNGVVVND-KQ  168 (279)
T ss_dssp             C--------EEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEEEC---TTTCSSEEEEEECS-SS
T ss_pred             c--------ceeecCCCcccccceeccccCC-cEEEEeeccceeeEeccC-Cceeecccc---cccccccceeeecc-ce
Confidence            2        22222 2334556788888887 567777777888888865 444555432   34556778888887 77


Q ss_pred             cEEEEeeCCCceEEEeCCCCCcceeEEe--eeccceEEEEEecCCCEEEEEec-CCeEEEEECCCCceeeEeeccCCCCC
Q 016458          220 RMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQQHGENE  296 (389)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~  296 (389)
                      +++++....+.|++||...  ..+..+.  +.......|++.++|+++++-.. ++.|.+|+ .+++.+..+.....   
T Consensus       169 ~i~v~d~~~~~V~~~d~~G--~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~---  242 (279)
T d1q7fa_         169 EIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVK---  242 (279)
T ss_dssp             EEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSC---
T ss_pred             eEEeeeccccceeeeecCC--ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCC---
Confidence            8888888889999999763  4454542  23345789999999997777554 45799998 45776666543221   


Q ss_pred             CCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce
Q 016458          297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK  330 (389)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (389)
                      ......+++.|+|.++ +++.++.|++|......
T Consensus       243 ~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         243 HAQCFDVALMDDGSVV-LASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             CSCEEEEEEETTTEEE-EEETTTEEEEEECSCCC
T ss_pred             CCCEeEEEEeCCCcEE-EEeCCCeEEEEEeeeec
Confidence            1236889999999755 45678899999987653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.37  E-value=2.2e-09  Score=87.59  Aligned_cols=242  Identities=11%  Similarity=0.119  Sum_probs=151.3

Q ss_pred             EEEEEEcCCCCeEEEEec-------CCcEEEEeCCCCCeeEEEeeC----CCcEEEEEECCCCcEEEEecCCCcEEEEeC
Q 016458           70 VYSLDWTSERNRIVSASQ-------DGRLIVWNALTSQKTHAIKLP----CAWVMTCAFSPTGQSVACGGLDSVCSIFNL  138 (389)
Q Consensus        70 v~~~~~~~~~~~l~~~~~-------dg~v~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~  138 (389)
                      .-.++|.++|+++++...       +|+|..||..++.........    ......++|.++++.++++...+.|..++.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            456789999997776432       467889998877654433211    133678999999998888877777888887


Q ss_pred             CCCCCCCCCCcceeeeccc-ccceEEEEEeeCCCcEEEEeeC---------------CCeEEEEeCCCCeeEEEecCccc
Q 016458          139 NSPTDKDGNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSSG---------------DQTCVLWDITTGLRTSVFGGEFQ  202 (389)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~  202 (389)
                      +......    ......+. -...+.+.+.++| .+.++-..               .|.|..++... +.....     
T Consensus       100 ~g~~~~~----~~~~~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~-----  168 (314)
T d1pjxa_         100 DGTFEEI----AKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVD-----  168 (314)
T ss_dssp             TSCEEEC----CSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEE-----
T ss_pred             CCcEEEE----EeccccccccCCCcEEEECCCC-CEEEecCccCcccccccceeccCCceEEEEeecC-ceeEee-----
Confidence            6532100    00001111 1135778899987 55554321               34555555432 222222     


Q ss_pred             CCCCCCeeEEEeeCCCC----cEEEEeeCCCceEEEeCCCCCccee--EE---ee-eccceEEEEEecCCCEEEEEecCC
Q 016458          203 SGHTADVLSVSISGSNS----RMFVSGSCDSTARLWDTRVASRAVR--TF---HG-HEGDVNTVKFFPDGNRFGTGSDDG  272 (389)
Q Consensus       203 ~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~--~~---~~-~~~~i~~~~~~~~~~~l~~~~~dg  272 (389)
                       ..-...+.++|+|...    .++++-+..+.|..||+........  .+   .. .......+++..+|++.++....+
T Consensus       169 -~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g  247 (314)
T d1pjxa_         169 -TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             -EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             -CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC
Confidence             1223346788988332    2556666788899998764422211  11   11 122356899999999888888889


Q ss_pred             eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEE-EEecCCcEEEEEccc
Q 016458          273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF-AGYSNGDCYVWDTLL  328 (389)
Q Consensus       273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~  328 (389)
                      .|.+||...+.....+.....     ..++++|.|+++.|+ +.+.+|.|..+++..
T Consensus       248 ~I~~~dp~~g~~~~~i~~p~~-----~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         248 HIEVFGPDGGQPKMRIRCPFE-----KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEECTTCBSCSEEEECSSS-----CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEEeCCCCEEEEEEECCCC-----CEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            999999887776665544322     378999999998554 455678888888653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=5.3e-09  Score=83.51  Aligned_cols=227  Identities=13%  Similarity=0.125  Sum_probs=138.3

Q ss_pred             eecccccCcEEEEEEcCCCCeEEEEecCC---cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC-CCcEEEE
Q 016458           61 RTLQGHAGKVYSLDWTSERNRIVSASQDG---RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIF  136 (389)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~~~~~dg---~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw  136 (389)
                      +.+..+...+..-+|||||+.||-.....   .+.+.+...+.. ..+..+........|+|+|+.++.... ++...++
T Consensus        32 ~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~  110 (269)
T d2hqsa1          32 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  110 (269)
T ss_dssp             EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCcccee
Confidence            34445677788999999999998665432   466666655554 445556677889999999998886543 3333333


Q ss_pred             eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC--eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEe
Q 016458          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI  214 (389)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  214 (389)
                      .......      ................+++++...+++...+|  .|...++..+.....      ...........|
T Consensus       111 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~  178 (269)
T d2hqsa1         111 VMDLASG------QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI------TWEGSQNQDADV  178 (269)
T ss_dssp             EEETTTC------CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC------CCSSSEEEEEEE
T ss_pred             ecccccc------cceeeeeccccccccccccccccceecccccCCceEeeeecccccceee------eccccccccccc
Confidence            3322110      12222233344445567777655666665555  455666666544433      244566778899


Q ss_pred             eCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec---CCeEEEEECCCCceeeEeecc
Q 016458          215 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFDIRTGHQLQVYYQQ  291 (389)
Q Consensus       215 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~  291 (389)
                      +|+...++.+....+...+|........ .....+........|+|||+.|+..+.   ...|.++++..+... .+...
T Consensus       179 spdg~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~-~lt~~  256 (269)
T d2hqsa1         179 SSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA-RLPAT  256 (269)
T ss_dssp             CTTSSEEEEEEECSSCEEEEEEETTTCC-EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE-ECCCS
T ss_pred             ccccceeEEEeecCCceeeeEeeccccc-ceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EEeCC
Confidence            9944444445555555555554443222 344445666778899999999876554   346899999866543 33332


Q ss_pred             CCCCCCCCeeEEEeCC
Q 016458          292 HGENEIPHVTSIAFSI  307 (389)
Q Consensus       292 ~~~~~~~~i~~~~~~~  307 (389)
                      ..     .+...+|||
T Consensus       257 ~g-----~~~~p~WSP  267 (269)
T d2hqsa1         257 DG-----QVKFPAWSP  267 (269)
T ss_dssp             SS-----EEEEEEECC
T ss_pred             CC-----cEEeEEeCC
Confidence            22     367788988

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.31  E-value=2.2e-08  Score=81.81  Aligned_cols=238  Identities=11%  Similarity=0.026  Sum_probs=150.3

Q ss_pred             cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC----CCeEEEE
Q 016458          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG----DQTCVLW  186 (389)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~iw  186 (389)
                      .+..++|.++|++.++-..++.|..|+.+...       ..............+++.++| +++++...    .+.+...
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~-------~~~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~  112 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-------IKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAA  112 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCC-------EEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCe-------EEEEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEE
Confidence            45678999999977777788888888876633       233333445567899999998 55555432    3456666


Q ss_pred             eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC------CCceEEEeCCCCCcceeEEeeeccceEEEEEec
Q 016458          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP  260 (389)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~  260 (389)
                      +............   .........+++.+ ++++.++...      .+.+..++...  ..+..+...-...+.++|+|
T Consensus       113 ~~~~~~~~~~~~~---~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg--~~~~~~~~~~~~pnGia~s~  186 (319)
T d2dg1a1         113 TENGDNLQDIIED---LSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF--RTVTPIIQNISVANGIALST  186 (319)
T ss_dssp             CTTSCSCEEEECS---SSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS--CCEEEEEEEESSEEEEEECT
T ss_pred             cCCCceeeeeccC---CCcccCCcceeEEe-ccceeecccccccccCcceeEEEeccc--ceeEEEeeccceeeeeeecc
Confidence            6666554444321   12234567888988 7776665332      12355555442  33444433444568899999


Q ss_pred             CCCEEE-EEecCCeEEEEECCCCce-eeEeec--cCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeec
Q 016458          261 DGNRFG-TGSDDGTCRLFDIRTGHQ-LQVYYQ--QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG  336 (389)
Q Consensus       261 ~~~~l~-~~~~dg~i~i~d~~~~~~-~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  336 (389)
                      +++.|+ +-+..+.|..|++..... ......  ............+++.++|++.++...++.|.+||. .++.+..+.
T Consensus       187 dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~  265 (319)
T d2dg1a1         187 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL  265 (319)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred             ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEe
Confidence            998664 445678999999864321 111100  000111112567999999998888888999999995 688777664


Q ss_pred             CcC--CCCCCCeeEEEECCCCCeEEeeeC
Q 016458          337 SLQ--NSHEGRITCLGLSADGSALCTGSW  363 (389)
Q Consensus       337 ~~~--~~~~~~v~~~~~~~~~~~l~~~~~  363 (389)
                      ...  ..+...+++++|.+++..+++...
T Consensus       266 ~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         266 IPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            321  234556889999998777766543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.30  E-value=1.8e-08  Score=82.36  Aligned_cols=238  Identities=11%  Similarity=0.080  Sum_probs=152.6

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC--CcEEEEeCCCCCCC
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD--SVCSIFNLNSPTDK  144 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~vw~~~~~~~~  144 (389)
                      ...+-.++|.++|++.++-..++.|..|+..++.....+.........++++++|+++++...+  ....++.+..... 
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~-  117 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD-  117 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC-
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc-
Confidence            3356789999999988887788999999988777666665556678999999999988775432  2333444333211 


Q ss_pred             CCCCcceeeec--ccccceEEEEEeeCCCcEEEEeeC------CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458          145 DGNLPVSRMLS--GHKGYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (389)
Q Consensus       145 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  216 (389)
                        .  ......  .-......+.+.++| ++.++...      .+.+..++...+......      ..-.....++|+|
T Consensus       118 --~--~~~~~~~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~------~~~~~pnGia~s~  186 (319)
T d2dg1a1         118 --N--LQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII------QNISVANGIALST  186 (319)
T ss_dssp             --S--CEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEE------EEESSEEEEEECT
T ss_pred             --e--eeeeccCCCcccCCcceeEEecc-ceeecccccccccCcceeEEEecccceeEEEe------eccceeeeeeecc
Confidence              0  111111  112356788999988 55544322      234666665544332222      1223457899999


Q ss_pred             CCCcEEEEeeCCCceEEEeCCCCCcceeEEee-------eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEee
Q 016458          217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (389)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (389)
                      +...++++-+..+.|..||+............       .......+++.++|++.++....+.|.+||- .++.+..+.
T Consensus       187 dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~  265 (319)
T d2dg1a1         187 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL  265 (319)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred             ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEe
Confidence            44445666677889999998754332222111       1123567999999998888888999999995 688877775


Q ss_pred             ccCC-CCCCCCeeEEEeCCCCCEEEEEec
Q 016458          290 QQHG-ENEIPHVTSIAFSISGRLLFAGYS  317 (389)
Q Consensus       290 ~~~~-~~~~~~i~~~~~~~~~~~l~~~~~  317 (389)
                      .... ......+++++|.+++..+++...
T Consensus       266 ~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         266 IPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            5432 122334789999998877766554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.7e-07  Score=80.65  Aligned_cols=294  Identities=10%  Similarity=0.045  Sum_probs=158.1

Q ss_pred             cEEEEEEcCCCCeEEEEe---------cCCcEEEEeCCCCCeeEEEe--eCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Q 016458           69 KVYSLDWTSERNRIVSAS---------QDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~---------~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (389)
                      .+....||||+++++.+.         ..+.+.++|+.++.......  .....+....|||+|+.+|... ++.+.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            677889999999887764         35678999999887544322  2234456688999999998775 56788877


Q ss_pred             CCCCCCCCCCCcceeeeccc--------c---------cceEEEEEeeCCCcEEEEee-CCCe-----------------
Q 016458          138 LNSPTDKDGNLPVSRMLSGH--------K---------GYVSCCQYVPDEDTHLITSS-GDQT-----------------  182 (389)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~--------~---------~~v~~~~~~~~~~~~l~~~~-~dg~-----------------  182 (389)
                      ...+..      ...+..+.        .         +.-..+-|+|+|. .|+... .+..                 
T Consensus       141 ~~~~~~------~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk-~iaf~~~D~s~V~~~~~~~~~~~~~p~~  213 (465)
T d1xfda1         141 HVGKQA------IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTV  213 (465)
T ss_dssp             SSSSCC------EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred             cCCCce------EEEecccCcceeeccccchhhhhhhccccceEEECCCCC-eEEEEEecccccceeeccccccccccee
Confidence            765331      11111111        1         1125678999985 455432 2332                 


Q ss_pred             ----------------EEEEeCCCCeeEEEecC-cccCCCCCCeeEEEeeCCCCcEEEEeeC-C---CceEEEeCCCCCc
Q 016458          183 ----------------CVLWDITTGLRTSVFGG-EFQSGHTADVLSVSISGSNSRMFVSGSC-D---STARLWDTRVASR  241 (389)
Q Consensus       183 ----------------i~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~  241 (389)
                                      +.++|+.++........ .........+..+.|.| ++++++.... +   ..+.++|..++ .
T Consensus       214 ~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg-~  291 (465)
T d1xfda1         214 KPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTG-V  291 (465)
T ss_dssp             EEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTC-C
T ss_pred             eeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcC-CCeEEEEEEccccccceEEEEcCCCC-c
Confidence                            34444443322211110 00011222367788988 6666555332 2   25778888876 4


Q ss_pred             ceeEEeeec-cce----EEEEEecCCCEEEE---EecCC--eEEEEECC------CCceeeEeeccCCCCCCCCeeEE-E
Q 016458          242 AVRTFHGHE-GDV----NTVKFFPDGNRFGT---GSDDG--TCRLFDIR------TGHQLQVYYQQHGENEIPHVTSI-A  304 (389)
Q Consensus       242 ~~~~~~~~~-~~i----~~~~~~~~~~~l~~---~~~dg--~i~i~d~~------~~~~~~~~~~~~~~~~~~~i~~~-~  304 (389)
                      ....+.... ..|    ....|+|+|+.++.   .-.+|  .+...++.      .+.....+....-     .|..+ .
T Consensus       292 ~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w-----~V~~i~~  366 (465)
T d1xfda1         292 CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDW-----DVTKILA  366 (465)
T ss_dssp             EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSS-----CEEEEEE
T ss_pred             EEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCc-----eEEEEEE
Confidence            433333222 212    34678899885432   22232  34433322      1222222222111     25554 6


Q ss_pred             eCCCCCEEE-EEecCC--cEEEEEc--ccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC---CeeEEeecceec
Q 016458          305 FSISGRLLF-AGYSNG--DCYVWDT--LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD---TNLKVNLGFWRV  376 (389)
Q Consensus       305 ~~~~~~~l~-~~~~dg--~i~i~d~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~W~~  376 (389)
                      |+++++.|+ ++..++  .-++|.+  ..+.....+... ........++.|||++++++.....   -.+.+    ++.
T Consensus       367 ~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~-~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~----~~~  441 (465)
T d1xfda1         367 YDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD-LVENCTYFSASFSHSMDFFLLKCEGPGVPMVTV----HNT  441 (465)
T ss_dssp             EETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT-SSSSCCCCEEEECTTSSEEEEECCSSSSCCEEE----EET
T ss_pred             EcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccc-cCCCCCEEEEEECCCCCEEEEEeecCCCCeEEE----EEC
Confidence            888877654 444332  3345543  333332222110 2334467799999999998854443   44566    777


Q ss_pred             ccCccc
Q 016458          377 QEGALS  382 (389)
Q Consensus       377 ~~~~~~  382 (389)
                      .+|+..
T Consensus       442 ~~~~~~  447 (465)
T d1xfda1         442 TDKKKM  447 (465)
T ss_dssp             TTCCEE
T ss_pred             CCCCEE
Confidence            777653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.3e-07  Score=81.34  Aligned_cols=273  Identities=14%  Similarity=0.090  Sum_probs=150.7

Q ss_pred             EEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC---CcEEEEEECCCCcEEEEec---------CCCcEEEEeCCCC
Q 016458           74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC---AWVMTCAFSPTGQSVACGG---------LDSVCSIFNLNSP  141 (389)
Q Consensus        74 ~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~---------~dg~i~vw~~~~~  141 (389)
                      .|.+++.++.. ..+|.|.+||..+++....+....   ..+....||||+++++...         ..+.+.++|+.++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            47788766543 457889999999887655444322   3567788999999988763         3567889999875


Q ss_pred             CCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccC-------------CCCCC
Q 016458          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS-------------GHTAD  208 (389)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------------~~~~~  208 (389)
                      ...     ...........+....|+|+|.. ++-.. ++.|.+.+..++............             .....
T Consensus       102 ~~~-----~l~~~~~~~~~l~~~~wSPDG~~-iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~  174 (465)
T d1xfda1         102 DPQ-----SLDPPEVSNAKLQYAGWGPKGQQ-LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (465)
T ss_dssp             CCE-----ECCCTTCCSCCCSBCCBCSSTTC-EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             cee-----eccCccCCccccceeeeccCCce-EEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccc
Confidence            411     11111222344556789999954 44433 567888888777665544211000             00111


Q ss_pred             eeEEEeeCCCCcEEEEee-CCCce---------------------------------EEEeCCCCCcceeEEe-----ee
Q 016458          209 VLSVSISGSNSRMFVSGS-CDSTA---------------------------------RLWDTRVASRAVRTFH-----GH  249 (389)
Q Consensus       209 v~~~~~~~~~~~~l~~~~-~dg~i---------------------------------~i~d~~~~~~~~~~~~-----~~  249 (389)
                      -..+-|+| +++.|+... .+..+                                 .++|+...........     ..
T Consensus       175 ~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~  253 (465)
T d1xfda1         175 HIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR  253 (465)
T ss_dssp             SEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred             cceEEECC-CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccc
Confidence            24677999 666666643 23333                                 3333332211111000     01


Q ss_pred             ccceEEEEEecCCCEEEEEec----CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEE---EEecCC--c
Q 016458          250 EGDVNTVKFFPDGNRFGTGSD----DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF---AGYSNG--D  320 (389)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~---~~~~dg--~  320 (389)
                      ...+..+.|+|++++++....    ...|.++|..+++....+......--...-....|+++|+.++   ..-.+|  .
T Consensus       254 ~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~  333 (465)
T d1xfda1         254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK  333 (465)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred             cceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCc
Confidence            123677899999886665432    2358889999988766554322110000123457899998432   222333  3


Q ss_pred             EEEEEcc------cceEEEeecCcCCCCCCCeeEE-EECCCCCeEE
Q 016458          321 CYVWDTL------LAKVVLNLGSLQNSHEGRITCL-GLSADGSALC  359 (389)
Q Consensus       321 i~i~d~~------~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~  359 (389)
                      ++.+++.      .++....+    ....-.|..+ +|+++++.+.
T Consensus       334 ly~~~~~~~~~~~~~~~~~~L----T~G~w~V~~i~~~d~~~~~vy  375 (465)
T d1xfda1         334 FYHITVSSSQPNSSNDNIQSI----TSGDWDVTKILAYDEKGNKIY  375 (465)
T ss_dssp             EEEEEEECSSCCSSSCCCCBS----CCSSSCEEEEEEEETTTTEEE
T ss_pred             eEEEEeccccccCCCceeEEe----ccCCceEEEEEEEcCCCCEEE
Confidence            4444332      22223333    2223345554 6888776654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.97  E-value=2.9e-06  Score=68.03  Aligned_cols=224  Identities=16%  Similarity=0.152  Sum_probs=139.6

Q ss_pred             EEEECCC-CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe
Q 016458          114 TCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL  192 (389)
Q Consensus       114 ~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  192 (389)
                      ...|++. +.+..+=-..+.|.-||..++.        .. .......+.++.+.+++ .+++ ++.+ .|..+|..+++
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~--------~~-~~~~~~~~~~i~~~~dg-~l~v-a~~~-gl~~~d~~tg~   89 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGR--------KT-VHALPFMGSALAKISDS-KQLI-ASDD-GLFLRDTATGV   89 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTE--------EE-EEECSSCEEEEEEEETT-EEEE-EETT-EEEEEETTTCC
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCe--------EE-EEECCCCcEEEEEecCC-CEEE-EEeC-ccEEeecccce
Confidence            3457764 4444444457788888887743        11 22234567889998886 4444 4554 58899999887


Q ss_pred             eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC----CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEE-E
Q 016458          193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC----DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG-T  267 (389)
Q Consensus       193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~  267 (389)
                      ........ .......+..+.+.| ++++.++...    .+.-.+|.+..+ ...... ..-...+.++|+++++.++ +
T Consensus        90 ~~~l~~~~-~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g-~~~~~~-~~~~~~Ng~~~s~d~~~l~~~  165 (295)
T d2ghsa1          90 LTLHAELE-SDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKG-KVTKLF-ADISIPNSICFSPDGTTGYFV  165 (295)
T ss_dssp             EEEEECSS-TTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETT-EEEEEE-EEESSEEEEEECTTSCEEEEE
T ss_pred             eeEEeeee-cCCCcccceeeEECC-CCCEEEEeccccccccceeEeeecCC-cEEEEe-eccCCcceeeecCCCceEEEe
Confidence            65543211 112234578888888 7776665432    234456665544 333333 3344568899999998665 4


Q ss_pred             EecCCeEEEEECCCCce-----eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCC
Q 016458          268 GSDDGTCRLFDIRTGHQ-----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH  342 (389)
Q Consensus       268 ~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  342 (389)
                      -+..+.|..|++.....     ...+...  .........+++..+|++.++....+.|..||. .++.+..+.    ..
T Consensus       166 dt~~~~I~~~~~d~~~~~~~~~~~~~~~~--~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~----lP  238 (295)
T d2ghsa1         166 DTKVNRLMRVPLDARTGLPTGKAEVFIDS--TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE----VP  238 (295)
T ss_dssp             ETTTCEEEEEEBCTTTCCBSSCCEEEEEC--TTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE----CS
T ss_pred             ecccceeeEeeecccccccccceEEEecc--CcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEec----CC
Confidence            45678899998753211     1111111  112224688999999998888777889999995 678887773    33


Q ss_pred             CCCeeEEEEC-CCCCeEEe
Q 016458          343 EGRITCLGLS-ADGSALCT  360 (389)
Q Consensus       343 ~~~v~~~~~~-~~~~~l~~  360 (389)
                      ...+++++|- +|.+.|+.
T Consensus       239 ~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         239 GKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             CSBEEEEEEESTTSCEEEE
T ss_pred             CCceEEEEEeCCCCCEEEE
Confidence            4578999995 56665544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.92  E-value=2.1e-06  Score=68.84  Aligned_cols=223  Identities=12%  Similarity=0.067  Sum_probs=143.8

Q ss_pred             EEEEcCC-CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcc
Q 016458           72 SLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV  150 (389)
Q Consensus        72 ~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  150 (389)
                      +..|++. +.+..+--..+.|.-||..+++.. .+.. ...+.++++.+++.++++. .+ .+.++|..+++.     ..
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~-~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~-----~~   92 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL-----TL   92 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE-----EE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC-CCCcEEEEEecCCCEEEEE-eC-ccEEeeccccee-----eE
Confidence            4568874 445555556789999998877543 3333 3468899999998877754 44 588899887541     11


Q ss_pred             eeeec--ccccceEEEEEeeCCCcEEEEeeC----CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEE
Q 016458          151 SRMLS--GHKGYVSCCQYVPDEDTHLITSSG----DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS  224 (389)
Q Consensus       151 ~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  224 (389)
                      .....  .....++++.+.|+| ++.++...    .+.-.+|.+..++.....      ..-.....+++++....++++
T Consensus        93 l~~~~~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~------~~~~~~Ng~~~s~d~~~l~~~  165 (295)
T d2ghsa1          93 HAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAKGKVTKLF------ADISIPNSICFSPDGTTGYFV  165 (295)
T ss_dssp             EECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEETTEEEEEE------EEESSEEEEEECTTSCEEEEE
T ss_pred             EeeeecCCCcccceeeEECCCC-CEEEEeccccccccceeEeeecCCcEEEEe------eccCCcceeeecCCCceEEEe
Confidence            11111  123467888999988 44444321    234456666666554444      222346788999955556677


Q ss_pred             eeCCCceEEEeCCCCCc----ceeE---EeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCC
Q 016458          225 GSCDSTARLWDTRVASR----AVRT---FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI  297 (389)
Q Consensus       225 ~~~dg~i~i~d~~~~~~----~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  297 (389)
                      -+..+.|..|++.....    ....   ..+..+....+++..+|++.++.-..+.|..|| ..++.+..+..+..    
T Consensus       166 dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~----  240 (295)
T d2ghsa1         166 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGK----  240 (295)
T ss_dssp             ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCS----
T ss_pred             ecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCC----
Confidence            77788999998753211    1111   122344578899999999888777788999999 46888887766443    


Q ss_pred             CCeeEEEeC-CCCCEEEEEe
Q 016458          298 PHVTSIAFS-ISGRLLFAGY  316 (389)
Q Consensus       298 ~~i~~~~~~-~~~~~l~~~~  316 (389)
                       .+++++|- ++.+.|++.+
T Consensus       241 -~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         241 -QTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             -BEEEEEEESTTSCEEEEEE
T ss_pred             -ceEEEEEeCCCCCEEEEEE
Confidence             38999995 6777666544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.74  E-value=3.9e-06  Score=66.69  Aligned_cols=238  Identities=11%  Similarity=0.050  Sum_probs=125.1

Q ss_pred             EEcCC--CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC----C--CcEEEEeCCCCCCCC
Q 016458           74 DWTSE--RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL----D--SVCSIFNLNSPTDKD  145 (389)
Q Consensus        74 ~~~~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d--g~i~vw~~~~~~~~~  145 (389)
                      ..+|+  |+.+|-.+ +|.|.+.|+.+++.. .+..+.+.+...+|||||+.||....    +  ..|.+++..++....
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35788  88887664 457888899887764 45666677899999999999986532    2  236666766543110


Q ss_pred             CCCcceeeecccccceEEEEEeeCCCcEEEEeeC-----CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (389)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (389)
                      ... ................|+|++..++++...     ...+...+...+......        ........+.+ +..
T Consensus        83 lt~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-~~~  152 (281)
T d1k32a2          83 ITY-FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN--------LGPATHILFAD-GRR  152 (281)
T ss_dssp             CCC-CCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC--------SCSCSEEEEET-TEE
T ss_pred             eee-cCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec--------CCccceeeecC-CCe
Confidence            000 000111223345678899998543333222     233555666555443221        22222333332 444


Q ss_pred             EEEEeeCCCc-----------eEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec--CCeEEEEECCCCceeeE
Q 016458          221 MFVSGSCDST-----------ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD--DGTCRLFDIRTGHQLQV  287 (389)
Q Consensus       221 ~l~~~~~dg~-----------i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~  287 (389)
                      .++....+..           ........  .................++++. .+.....  ...|.++|+.++.... 
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~-  228 (281)
T d1k32a2         153 VIGRNTFELPHWKGYRGGTRGKIWIEVNS--GAFKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRK-  228 (281)
T ss_dssp             EEEESCSCCTTSTTCCSTTCCEEEEEEET--TEEEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEE-
T ss_pred             EEEeeccccceeeeeccCCcceeeeeccc--cceeeccCCccccceeeeeccc-cceecccccccceEEEeCCCCceEE-
Confidence            4444332221           11111111  1111222223334444555442 2222222  3357888887665433 


Q ss_pred             eeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEe
Q 016458          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN  334 (389)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  334 (389)
                      +.....      .....|+|||+.|+.. .++.|+++|+.+++....
T Consensus       229 lt~~~~------~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         229 HTSFTD------YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             CCCCCS------SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred             eecCCC------cccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence            222111      2234689999987764 567899999988776543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=3e-05  Score=60.64  Aligned_cols=248  Identities=9%  Similarity=0.034  Sum_probs=149.0

Q ss_pred             eEEEEecCCcEEEEeCCCCCe-----eEEEeeCCCcEEEEEECCCCcEEEEe-cCCCcEEEEeCCCCCCCCCCCcceeee
Q 016458           81 RIVSASQDGRLIVWNALTSQK-----THAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRML  154 (389)
Q Consensus        81 ~l~~~~~dg~v~iw~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~  154 (389)
                      +|+-+.. +.|+-.+++....     ...+..+...+..++|.+..+.++.. ..++.|+..+++...       .....
T Consensus         3 fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~-------~~~v~   74 (263)
T d1npea_           3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-------PTTII   74 (263)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-------CEEEE
T ss_pred             EEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC-------cEEEE
Confidence            4444333 4676666644321     22333444557889999877777665 456778888887633       22223


Q ss_pred             cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEE
Q 016458          155 SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW  234 (389)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  234 (389)
                      ......+.++++..-++++..+-...+.|.+.++.........     ......+..++++|..+.++.+-...+..+|+
T Consensus        75 ~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~-----~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~  149 (263)
T d1npea_          75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF-----DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIE  149 (263)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSSCSSEEEEEEETTTTEEEEEECCSSSCEEE
T ss_pred             EeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEe-----cccccCCcEEEEecccCcEEEeecCCCCcEEE
Confidence            2233567888988766566667677889999999876554443     23345688999999666555554333343444


Q ss_pred             --eCCCCCcceeEEeeeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCE
Q 016458          235 --DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL  311 (389)
Q Consensus       235 --d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  311 (389)
                        ++... .........-.....+++.+.++.|+.+ ...+.|...++........+ ....     ....+++.  +.+
T Consensus       150 r~~~dG~-~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~-~~~~-----~P~~lav~--~~~  220 (263)
T d1npea_         150 TSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL-EGLQ-----YPFAVTSY--GKN  220 (263)
T ss_dssp             EEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE-ECCC-----SEEEEEEE--TTE
T ss_pred             EecCCCC-CceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEE-CCCC-----CcEEEEEE--CCE
Confidence              55433 2222222223456899999877777555 46788999998754433333 2211     14577775  455


Q ss_pred             EEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458          312 LFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (389)
Q Consensus       312 l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (389)
                      |+... ..+.|...|..+++....+.   ........++++.+
T Consensus       221 lYwtd~~~~~I~~~~~~~g~~~~~~~---~~~~~~~~gi~v~~  260 (263)
T d1npea_         221 LYYTDWKTNSVIAMDLAISKEMDTFH---PHKQTRLYGITIAL  260 (263)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEC---CSSCCCCCCEEEEC
T ss_pred             EEEEECCCCEEEEEECCCCccceEEC---CCCCCCcceEEEeC
Confidence            55554 56789999998888877663   22223444555443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.57  E-value=2.6e-06  Score=67.79  Aligned_cols=236  Identities=11%  Similarity=0.084  Sum_probs=121.9

Q ss_pred             ECCC--CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC-----CeEEEEeCC
Q 016458          117 FSPT--GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDIT  189 (389)
Q Consensus       117 ~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~  189 (389)
                      .+|+  |+.++..+ +|.|.+.|+.++.        ...+..+.+.+....|+|||..+.++...+     ..|.+++..
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~--------~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~   76 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGS--------TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE   76 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCC--------EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCC--------EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEec
Confidence            4677  88887664 4678888988754        344556667788899999995544444332     248888888


Q ss_pred             CCeeEEEecCc-ccCCCCCCeeEEEeeCCCCcEEEEeeCC------CceEEEeCCCCCcceeEEeeeccceEEEEEecCC
Q 016458          190 TGLRTSVFGGE-FQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG  262 (389)
Q Consensus       190 ~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (389)
                      ++......... .............|+| +++.++.....      ..+...+....  ...  ..+........+.+.+
T Consensus        77 ~g~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~  151 (281)
T d1k32a2          77 NGEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDAMQPFSSMTCLYRVENDGI--NFV--PLNLGPATHILFADGR  151 (281)
T ss_dssp             TTEEEECCCCCEEEETTEECSEEEEECT-TCCEEEEECTTSSSTTCCEEEEEEGGGT--EEE--ECCSCSCSEEEEETTE
T ss_pred             CCceEEeeecCCCccCccccccccccCC-CCCEEEEEEccCCCccceeeeeecCCCc--eeE--EecCCccceeeecCCC
Confidence            88765543110 0011223456788998 66666654321      12333443322  111  1122222333333333


Q ss_pred             CEEEEEecCC-----------eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC--CcEEEEEcccc
Q 016458          263 NRFGTGSDDG-----------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN--GDCYVWDTLLA  329 (389)
Q Consensus       263 ~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~  329 (389)
                      ..++....+.           ............... .....     ......++++. .+.....+  ..|+++|+.++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~  224 (281)
T d1k32a2         152 RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI-VDMST-----HVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGK  224 (281)
T ss_dssp             EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE-ECCSS-----CCEEEEEETTE-EEEEECTTSSCEEEEEETTSC
T ss_pred             eEEEeeccccceeeeeccCCcceeeeeccccceeec-cCCcc-----ccceeeeeccc-cceecccccccceEEEeCCCC
Confidence            3333322211           111111111111111 11111     13444455442 23333333  35778888766


Q ss_pred             eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccCc
Q 016458          330 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPW  384 (389)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~~  384 (389)
                      +.....    ......  ...|+|||+.|+. ..++.|.+    +++.+|+..+.
T Consensus       225 ~~~~lt----~~~~~~--~~~~SpDG~~I~f-~~~~~l~~----~d~~~g~~~~i  268 (281)
T d1k32a2         225 DLRKHT----SFTDYY--PRHLNTDGRRILF-SKGGSIYI----FNPDTEKIEKI  268 (281)
T ss_dssp             SCEECC----CCCSSC--EEEEEESSSCEEE-EETTEEEE----ECTTTCCEEEC
T ss_pred             ceEEee----cCCCcc--cccCcCCCCEEEE-EeCCEEEE----EECCCCCEEEe
Confidence            544322    222222  3468999999876 44688998    99999987653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=0.00012  Score=57.10  Aligned_cols=213  Identities=8%  Similarity=-0.000  Sum_probs=134.5

Q ss_pred             cccccCcEEEEEEcCCCCeEEEE-ecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE-EecCCCcEEEEeCCC
Q 016458           63 LQGHAGKVYSLDWTSERNRIVSA-SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNS  140 (389)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~  140 (389)
                      +..+...+.+|+|++..+.|.-+ ..++.|+..++........+......+..+++..-+..|+ +-...+.|.+.+++.
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            33445568899999877766655 4567888888876665555544446688999987565555 555678999999876


Q ss_pred             CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC--CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN  218 (389)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  218 (389)
                      ..       ...........+..++..|..+.++.+-..  .+.|..-++.........     ...-.....+++.+.+
T Consensus       111 ~~-------~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~-----~~~~~~P~glaiD~~~  178 (263)
T d1npea_         111 TQ-------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA-----QDNLGLPNGLTFDAFS  178 (263)
T ss_dssp             CS-------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE-----CTTCSCEEEEEEETTT
T ss_pred             ce-------EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeee-----eecccccceEEEeecC
Confidence            33       112222233567899999987554444332  234555566554444333     2333466899999855


Q ss_pred             CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeec
Q 016458          219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ  290 (389)
Q Consensus       219 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  290 (389)
                      +.+..+-...+.|...|+... .....+.+. ....++++. ++.+..+-...+.|...|..+++....+..
T Consensus       179 ~~lYw~d~~~~~I~~~~~~g~-~~~~v~~~~-~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~  247 (263)
T d1npea_         179 SQLCWVDAGTHRAECLNPAQP-GRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP  247 (263)
T ss_dssp             TEEEEEETTTTEEEEEETTEE-EEEEEEECC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred             cEEEEEeCCCCEEEEEECCCC-CeEEEECCC-CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECC
Confidence            555566566788999998754 222223332 234578775 344444545678899999988887766543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=0.00019  Score=56.03  Aligned_cols=238  Identities=11%  Similarity=-0.011  Sum_probs=142.6

Q ss_pred             eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec-CCCcEEEEeCCCCCCCCCCCcceeeeccccc
Q 016458           81 RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG  159 (389)
Q Consensus        81 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  159 (389)
                      +|+.+.. ..|+-.++.+......+. ....+..++|++..+.++-.. ..+.|.-.+++.....   ............
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~---~~~~~~~~~~~~   77 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSYDTVISRDIQ   77 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCS
T ss_pred             EEEEECC-CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC---cceEEEEeCCCC
Confidence            3444443 358888987665444433 445678999999887776654 4566776666542210   111222223334


Q ss_pred             ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCCceEEEeCCC
Q 016458          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRV  238 (389)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  238 (389)
                      .+..+++.+.++++..+-...+.|.+.++.........     .........++++|..+.++.+.. ..+.|.-.++..
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~-----~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG  152 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEE-----cCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC
Confidence            56778888777677777777889999999877655554     344566889999995665555532 334566666653


Q ss_pred             CCcceeEEe-eeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE-
Q 016458          239 ASRAVRTFH-GHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG-  315 (389)
Q Consensus       239 ~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-  315 (389)
                      .  ....+. ..-.....+++.+.++.|+.+ ...+.|...++..............   ......+++.  +.+|+.+ 
T Consensus       153 s--~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~---~~~p~~lav~--~~~ly~td  225 (266)
T d1ijqa1         153 V--DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR---LAHPFSLAVF--EDKVFWTD  225 (266)
T ss_dssp             C--CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTT---TSSEEEEEEE--TTEEEEEE
T ss_pred             C--ceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCc---ccccEEEEEE--CCEEEEEE
Confidence            3  333332 233457899999977766655 5678899999875543333322111   1124567765  3455554 


Q ss_pred             ecCCcEEEEEcccceEEEee
Q 016458          316 YSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       316 ~~dg~i~i~d~~~~~~~~~~  335 (389)
                      ..++.|...+..++.....+
T Consensus       226 ~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         226 IINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             TTTTEEEEEETTTCCCCEEE
T ss_pred             CCCCeEEEEECCCCcceEEE
Confidence            35677877777776555444

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.38  E-value=0.00012  Score=59.66  Aligned_cols=266  Identities=11%  Similarity=0.050  Sum_probs=151.2

Q ss_pred             EEEEecCCcEEEEeCCCCCeeEEEeeCC---------------------------------------CcE--EEEEECC-
Q 016458           82 IVSASQDGRLIVWNALTSQKTHAIKLPC---------------------------------------AWV--MTCAFSP-  119 (389)
Q Consensus        82 l~~~~~dg~v~iw~~~~~~~~~~~~~~~---------------------------------------~~v--~~~~~~~-  119 (389)
                      |.+|+..|.|+|+-+.+++.+..+....                                       +..  ..+.+.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            5678889999999888887776664210                                       000  1333432 


Q ss_pred             --CCcEEEEec-CCCcEEEEeCCCCCCCCCCCcceeeec-ccccceEEEEEeeCC-CcEEEEeeCC--------------
Q 016458          120 --TGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDE-DTHLITSSGD--------------  180 (389)
Q Consensus       120 --~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~l~~~~~d--------------  180 (389)
                        ||+++++.. .++.|.+.|++..+       ..+... .....+..+...++. ..+++.++.+              
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fk-------t~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMK-------CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTE-------EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             ccceeEEEEEcCCCceEEEEECccee-------eeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence              678887765 57889999998744       222221 222334545554332 2355554442              


Q ss_pred             ----CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC----------------------------
Q 016458          181 ----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----------------------------  228 (389)
Q Consensus       181 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------------------------  228 (389)
                          +.+.++|..+.+......      -......+.+++ +++++++.+.+                            
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~------V~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~  241 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVL------VSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK  241 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEE------ESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred             hhcceEEEEEecCCceEEEEee------eCCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHH
Confidence                346788999888777763      223566788888 66676665532                            


Q ss_pred             ----------CceEEEeCCCC-CcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCcee-------eEee
Q 016458          229 ----------STARLWDTRVA-SRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQL-------QVYY  289 (389)
Q Consensus       229 ----------g~i~i~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~-------~~~~  289 (389)
                                +.+.+.|.+.. ...+..+-+-......+.++|||+++++++ .+.++.++|++.-...       ....
T Consensus       242 av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~  321 (459)
T d1fwxa2         242 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV  321 (459)
T ss_dssp             HHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGE
T ss_pred             hhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccE
Confidence                      12344444431 112222222334467899999999987766 6889999998642111       0000


Q ss_pred             ccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc----------eEEEeecC-cCCCCCCCeeEEEECCCCCeE
Q 016458          290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----------KVVLNLGS-LQNSHEGRITCLGLSADGSAL  358 (389)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l  358 (389)
                      ... ..........+|+..|+-..+-.-|..|.-|++...          ..+..+.. +..+|.....+-...|||++|
T Consensus       322 ~~e-~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l  400 (459)
T d1fwxa2         322 VAE-PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL  400 (459)
T ss_dssp             EEC-CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred             Eee-cccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEE
Confidence            000 111112466789888865555668999999998533          33333311 112222111111346788988


Q ss_pred             Eeee
Q 016458          359 CTGS  362 (389)
Q Consensus       359 ~~~~  362 (389)
                      ++..
T Consensus       401 ~~~n  404 (459)
T d1fwxa2         401 VCLS  404 (459)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8875

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=0.00041  Score=54.12  Aligned_cols=225  Identities=9%  Similarity=-0.016  Sum_probs=133.7

Q ss_pred             CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee----EEEecCcccCCCC
Q 016458          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR----TSVFGGEFQSGHT  206 (389)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~  206 (389)
                      ..|+-.++++..       .. .+......+..+.|.+..+.++.+-...+.|...++.....    ....     ....
T Consensus        10 ~~I~~~~l~~~~-------~~-~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~-----~~~~   76 (266)
T d1ijqa1          10 HEVRKMTLDRSE-------YT-SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-----SRDI   76 (266)
T ss_dssp             SSEEEEETTSCC-------CE-EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-----CSSC
T ss_pred             CeEEEEECCCCc-------ce-eeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEE-----eCCC
Confidence            358888887643       12 22233456778999987755555555677787777654221    1122     2233


Q ss_pred             CCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe--cCCeEEEEECCCCce
Q 016458          207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRTGHQ  284 (389)
Q Consensus       207 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~  284 (389)
                      ..+..+++.+..+++.++-...+.|.+.++... ...............++++|...+|+...  ..+.|...++.....
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~-~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~  155 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCc-eEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce
Confidence            456788888767777777677789999998855 33333444455688999999665655443  345677777764433


Q ss_pred             eeEeeccCCCCCCCCeeEEEeCCCCCEEEEE-ecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  363 (389)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  363 (389)
                      .......     ....+.+++++.++.|+.+ ...+.|...++...........  ........+|++.. +.+..+-..
T Consensus       156 ~~l~~~~-----~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~--~~~~~~p~~lav~~-~~ly~td~~  227 (266)
T d1ijqa1         156 YSLVTEN-----IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--EKRLAHPFSLAVFE-DKVFWTDII  227 (266)
T ss_dssp             EEEECSS-----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--TTTTSSEEEEEEET-TEEEEEETT
T ss_pred             ecccccc-----cceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeC--CCcccccEEEEEEC-CEEEEEECC
Confidence            3322221     1236899999988877766 4467888889865433222211  22233456788763 344444445


Q ss_pred             CCeeEEeecceecccCcc
Q 016458          364 DTNLKVNLGFWRVQEGAL  381 (389)
Q Consensus       364 dg~i~i~~~~W~~~~~~~  381 (389)
                      ++.|..    .+..+|+.
T Consensus       228 ~~~I~~----~~~~~g~~  241 (266)
T d1ijqa1         228 NEAIFS----ANRLTGSD  241 (266)
T ss_dssp             TTEEEE----EETTTCCC
T ss_pred             CCeEEE----EECCCCcc
Confidence            677766    66666643

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.21  E-value=0.0014  Score=57.06  Aligned_cols=271  Identities=14%  Similarity=0.169  Sum_probs=146.9

Q ss_pred             CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc-EEEEEECC--CCcEEEEec------CCCcEEEEeCCCCCCC------
Q 016458           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-VMTCAFSP--TGQSVACGG------LDSVCSIFNLNSPTDK------  144 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~------~dg~i~vw~~~~~~~~------  144 (389)
                      ..++.+..|+.|.-.|..+|+.+......... ...+.-.|  ....++.+.      ..|.|.-+|..+++..      
T Consensus       118 ~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  197 (560)
T d1kv9a2         118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV  197 (560)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred             CeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeec
Confidence            35778888999999999999998877643211 00111111  122333332      2356777887776511      


Q ss_pred             --CCCCcce--------------eeec-ccccce-EEEEEeeCCCcEEEEeeC-------------------CCeEEEEe
Q 016458          145 --DGNLPVS--------------RMLS-GHKGYV-SCCQYVPDEDTHLITSSG-------------------DQTCVLWD  187 (389)
Q Consensus       145 --~~~~~~~--------------~~~~-~~~~~v-~~~~~~~~~~~~l~~~~~-------------------dg~i~iwd  187 (389)
                        .......              .... .....+ ..+.+.+.. .+++.+..                   ...|.-.|
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~-~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld  276 (560)
T d1kv9a2         198 PGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (560)
T ss_dssp             CCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             cccccCCccccccccccccccccccccccCCCCccccccccccc-CeeeecCCCCcccccccccccCCccccceeeEEec
Confidence              0000000              0000 001111 123445544 33332211                   34677889


Q ss_pred             CCCCeeEEEecCcccCC----CCCC--eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee-ec----------
Q 016458          188 ITTGLRTSVFGGEFQSG----HTAD--VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-HE----------  250 (389)
Q Consensus       188 ~~~~~~~~~~~~~~~~~----~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~----------  250 (389)
                      +.+++....+.......    ....  ...+.........++.+..+|.+.++|..++ +.+..... ..          
T Consensus       277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG-~~i~~~~~~~~~~~~~~d~~~  355 (560)
T d1kv9a2         277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG-KLISAEKFGKVTWAEKVDLAT  355 (560)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCCSEEEECTTT
T ss_pred             CCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCC-cccccccccccccccccChhh
Confidence            99999887764311110    0111  1222222112246778889999999998877 33322210 00          


Q ss_pred             -----------------------c--ceEEEEEecCCCEEEEEec-----------------------------------
Q 016458          251 -----------------------G--DVNTVKFFPDGNRFGTGSD-----------------------------------  270 (389)
Q Consensus       251 -----------------------~--~i~~~~~~~~~~~l~~~~~-----------------------------------  270 (389)
                                             +  .-...+++|+..++++...                                   
T Consensus       356 ~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  435 (560)
T d1kv9a2         356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (560)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             ccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcc
Confidence                                   0  0113566776666665432                                   


Q ss_pred             -CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEE
Q 016458          271 -DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  349 (389)
Q Consensus       271 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  349 (389)
                       .|.|.-||+.+++...........      ..-.++..+.++++|+.||.++.+|..+|+.+.++......+..+   +
T Consensus       436 ~~G~l~A~D~~tGk~~W~~~~~~~~------~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P---~  506 (560)
T d1kv9a2         436 VSGALLAWDPVKQKAAWKVPYPTHW------NGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP---M  506 (560)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---E
T ss_pred             cccceEEEeCCCCeEeeeccCCCCC------CCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccC---E
Confidence             256888999999888777654321      222233457788899999999999999999999986543333333   3


Q ss_pred             EECCCCC-eEEee
Q 016458          350 GLSADGS-ALCTG  361 (389)
Q Consensus       350 ~~~~~~~-~l~~~  361 (389)
                      .+..+|+ ||++.
T Consensus       507 ty~~dGkqyv~v~  519 (560)
T d1kv9a2         507 TFELAGRQYVAIM  519 (560)
T ss_dssp             EEEETTEEEEEEE
T ss_pred             EEEECCEEEEEEE
Confidence            4445675 55443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.19  E-value=0.0011  Score=54.84  Aligned_cols=283  Identities=10%  Similarity=0.053  Sum_probs=141.6

Q ss_pred             EEEEEEcCCCCeEEEEecCC-----------cEEEEeCCCCCeeEE--Eee-CCCcEEEEEECCCCcEEEEecCC-CcEE
Q 016458           70 VYSLDWTSERNRIVSASQDG-----------RLIVWNALTSQKTHA--IKL-PCAWVMTCAFSPTGQSVACGGLD-SVCS  134 (389)
Q Consensus        70 v~~~~~~~~~~~l~~~~~dg-----------~v~iw~~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~l~~~~~d-g~i~  134 (389)
                      +...+...+|+.++.|+.+.           .+.+||..+++-...  ... +.......++.+++++++.|+.+ ..+.
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            33444556788888877431           377999988764322  222 22233456788999999998765 5899


Q ss_pred             EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC------CeEEEEeCCCCeeEEEecCccc----CC
Q 016458          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVLWDITTGLRTSVFGGEFQ----SG  204 (389)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~----~~  204 (389)
                      +||..+..-     .....+... ..-...+..+++ .+++.|+.+      ..+.+||+.+..-...-.....    ..
T Consensus       102 ~yd~~~~~w-----~~~~~~~~~-r~~~~~~~~~dG-~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~  174 (387)
T d1k3ia3         102 LYDSSSDSW-----IPGPDMQVA-RGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD  174 (387)
T ss_dssp             EEEGGGTEE-----EECCCCSSC-CSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC
T ss_pred             EecCccCcc-----ccccccccc-ccccceeeecCC-ceeeeccccccccccceeeeecCCCCceeecCCCccccccccc
Confidence            999876431     111111111 112345566676 567776642      4689999988765432211000    00


Q ss_pred             CCC----CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee-----cc--ceEEEEEe-cCCCEEEEEecCC
Q 016458          205 HTA----DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-----EG--DVNTVKFF-PDGNRFGTGSDDG  272 (389)
Q Consensus       205 ~~~----~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~--~i~~~~~~-~~~~~l~~~~~dg  272 (389)
                      +..    .-....+...++.+++.+...+.+.++|..+..-........     ..  .-.++.+. .+++.++.|+...
T Consensus       175 ~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~  254 (387)
T d1k3ia3         175 KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD  254 (387)
T ss_dssp             TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSS
T ss_pred             ccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccC
Confidence            000    001111222256667777777777777766541111000000     00  11223232 2566777776421


Q ss_pred             --------eEEEEECCCCcee-eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC-----------cEEEEEcccceEE
Q 016458          273 --------TCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-----------DCYVWDTLLAKVV  332 (389)
Q Consensus       273 --------~i~i~d~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~  332 (389)
                              ...+.++...... ..............-.+.+..++|+++++|+.+.           .+.+||..+.+-.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~  334 (387)
T d1k3ia3         255 YQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY  334 (387)
T ss_dssp             SSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred             CCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEE
Confidence                    2333333321111 1111111111111123455668999988887531           4789998776532


Q ss_pred             Ee--ecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458          333 LN--LGSLQNSHEGRITCLGLSADGSALCTGSW  363 (389)
Q Consensus       333 ~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  363 (389)
                      ..  +......|.    ...+.+||+.|+.|+.
T Consensus       335 ~~~~~~~~R~~Hs----~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         335 KQNPNSIVRVYHS----ISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             ECCCCSSCCCTTE----EEEECTTSCEEEEECC
T ss_pred             ECCCCCCcccceE----EEEECCCCEEEEEeCC
Confidence            21  111111121    2345789999999884

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.17  E-value=0.0012  Score=57.57  Aligned_cols=262  Identities=15%  Similarity=0.142  Sum_probs=145.1

Q ss_pred             CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcE-EEEEECC---CCcEEEEec------CCCcEEEEeCCCCCCCCCCCc
Q 016458           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWV-MTCAFSP---TGQSVACGG------LDSVCSIFNLNSPTDKDGNLP  149 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v-~~~~~~~---~~~~l~~~~------~dg~i~vw~~~~~~~~~~~~~  149 (389)
                      ..++.++.||.+.-.|.++|+............ ..+.-.|   ++. ++.+.      .+|.|+-+|..+++.      
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~-vivg~~~~~~~~~G~v~a~D~~TG~~------  188 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGEL------  188 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTE-EEEECBCGGGTCCCEEEEEETTTCCE------
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCe-EEEeeccccccccCcEEEEECCCCcE------
Confidence            367778889999999999999887665322100 0011111   333 34443      367899999888652      


Q ss_pred             ceeeec-------------------------------------ccccce-EEEEEeeCCCcEEEEeeC------------
Q 016458          150 VSRMLS-------------------------------------GHKGYV-SCCQYVPDEDTHLITSSG------------  179 (389)
Q Consensus       150 ~~~~~~-------------------------------------~~~~~v-~~~~~~~~~~~~l~~~~~------------  179 (389)
                       .-...                                     ...+.+ ...++.+.. .+++.+..            
T Consensus       189 -~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~-g~~y~~tg~~~p~~~~~r~g  266 (571)
T d2ad6a1         189 -KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPG  266 (571)
T ss_dssp             -EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCS
T ss_pred             -EEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhc-CeeeeecccccCcccccccc
Confidence             11000                                     000111 123444544 23333322            


Q ss_pred             ----CCeEEEEeCCCCeeEEEecCcccCCC----CCCeeEEEeeCCC--CcEEEEeeCCCceEEEeCCCCCcceeEEeee
Q 016458          180 ----DQTCVLWDITTGLRTSVFGGEFQSGH----TADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVASRAVRTFHGH  249 (389)
Q Consensus       180 ----dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  249 (389)
                          ...+...|+++++....+........    .............  ...++.++.+|.+.++|..++ +.+......
T Consensus       267 ~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG-~~i~~~~~~  345 (571)
T d2ad6a1         267 DNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENG-NLIVAEKVD  345 (571)
T ss_dssp             CCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTC-CEEEEEESS
T ss_pred             ccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCC-cEeeeeccC
Confidence                35688889999998887743211111    1111112222111  235677888999999998876 333211100


Q ss_pred             -------------------------------------ccc--eEEEEEecCCCEEEEEecC-------------------
Q 016458          250 -------------------------------------EGD--VNTVKFFPDGNRFGTGSDD-------------------  271 (389)
Q Consensus       250 -------------------------------------~~~--i~~~~~~~~~~~l~~~~~d-------------------  271 (389)
                                                           .+.  -...+++|+..++++...+                   
T Consensus       346 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~  425 (571)
T d2ad6a1         346 PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFV  425 (571)
T ss_dssp             TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred             CcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcccc
Confidence                                                 000  0125677766666554332                   


Q ss_pred             ------------------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEE
Q 016458          272 ------------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL  333 (389)
Q Consensus       272 ------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  333 (389)
                                        |.|.-+|+.+++...........      .+-.++..+.++++|+.||.++.+|.++|+.+.
T Consensus       426 ~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~------~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW  499 (571)
T d2ad6a1         426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAA------WGGTLYTKGGLVWYATLDGYLKALDNKDGKELW  499 (571)
T ss_dssp             CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCC------CSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCC------CcceeEecCCEEEEECCCCeEEEEECCCCcEEE
Confidence                              46778888888877766543321      111122356688889999999999999999999


Q ss_pred             eecCcCCCCCCCeeEEEECCCCC-eEEe
Q 016458          334 NLGSLQNSHEGRITCLGLSADGS-ALCT  360 (389)
Q Consensus       334 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~  360 (389)
                      ++.........++   .|..||+ |+++
T Consensus       500 ~~~l~~~~~a~P~---ty~~dGkqYi~v  524 (571)
T d2ad6a1         500 NFKMPSGGIGSPM---TYSFKGKQYIGS  524 (571)
T ss_dssp             EEECSSCCCSCCE---EEEETTEEEEEE
T ss_pred             EEECCCCceecce---EEEECCEEEEEE
Confidence            8864333344444   3444675 4544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.17  E-value=0.00072  Score=59.04  Aligned_cols=282  Identities=11%  Similarity=0.036  Sum_probs=152.8

Q ss_pred             eEEEEe-cCCcEEEEeC-CCCCeeEEEeeCCC----cE-------EEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458           81 RIVSAS-QDGRLIVWNA-LTSQKTHAIKLPCA----WV-------MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (389)
Q Consensus        81 ~l~~~~-~dg~v~iw~~-~~~~~~~~~~~~~~----~v-------~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (389)
                      .|+.++ .++.|...|. ++|+.+-++.....    ..       ..+++.  +..++.++.||.+.-.|.++++..   
T Consensus        64 ~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~---  138 (571)
T d2ad6a1          64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKIN---  138 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEE---
T ss_pred             EEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhh---
Confidence            444444 4688988887 47998887653211    00       112222  345777788888888888876510   


Q ss_pred             Ccceeeec-cc-ccceEEEEEeeCCCcEEEEee------CCCeEEEEeCCCCeeEEEecCcccC----------------
Q 016458          148 LPVSRMLS-GH-KGYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQS----------------  203 (389)
Q Consensus       148 ~~~~~~~~-~~-~~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~----------------  203 (389)
                        ....+. .+ ...++.--...++  .++.+.      ..|.|+-+|+.+++.+..+......                
T Consensus       139 --w~~~~~~~~~~~~~t~~p~v~~~--~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~  214 (571)
T d2ad6a1         139 --WEVEVCDPKVGSTLTQAPFVAKD--TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY  214 (571)
T ss_dssp             --EEEECCCGGGTCBCCSCCEEETT--EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred             --ccccccccccccceeecCeEeCC--eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCccccccccccccccccc
Confidence              111110 01 1111111112222  344444      3788999999999998876321000                


Q ss_pred             ----------------CCCCCe-eEEEeeCCCCcEEEEeeC----------------CCceEEEeCCCCCcceeEEeeec
Q 016458          204 ----------------GHTADV-LSVSISGSNSRMFVSGSC----------------DSTARLWDTRVASRAVRTFHGHE  250 (389)
Q Consensus       204 ----------------~~~~~v-~~~~~~~~~~~~l~~~~~----------------dg~i~i~d~~~~~~~~~~~~~~~  250 (389)
                                      .....+ ...++.+ ...+++.+..                ...+.-.|.+++ +..-.++...
T Consensus       215 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~-~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG-~~~W~~q~~~  292 (571)
T d2ad6a1         215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG-MAKWGYQKTP  292 (571)
T ss_dssp             CCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC-CEEEEEESST
T ss_pred             CcccccccccCCcccccCCCccccccccch-hcCeeeeecccccCccccccccccccccceeeeeccch-hheecccccC
Confidence                            000111 2345555 4444444433                235666777777 4444443221


Q ss_pred             c---------ceEEEEEecCCC---EEEEEecCCeEEEEECCCCceeeEeeccCCCC-----------------------
Q 016458          251 G---------DVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN-----------------------  295 (389)
Q Consensus       251 ~---------~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----------------------  295 (389)
                      .         +........+++   .++.++.+|.+.++|..+++.+..........                       
T Consensus       293 ~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  372 (571)
T d2ad6a1         293 HDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMD  372 (571)
T ss_dssp             TCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTT
T ss_pred             ccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccc
Confidence            1         111222223443   46788899999999999998775432211000                       


Q ss_pred             -----------CCCCeeEEEeCCCCCEEEEEecC-------------------------------------CcEEEEEcc
Q 016458          296 -----------EIPHVTSIAFSISGRLLFAGYSN-------------------------------------GDCYVWDTL  327 (389)
Q Consensus       296 -----------~~~~i~~~~~~~~~~~l~~~~~d-------------------------------------g~i~i~d~~  327 (389)
                                 ....-...+++|+..++++...+                                     |.|.-+|+.
T Consensus       373 ~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~  452 (571)
T d2ad6a1         373 HKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLT  452 (571)
T ss_dssp             CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTT
T ss_pred             cCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccC
Confidence                       00001235677777766654332                                     457778888


Q ss_pred             cceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          328 LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      +++.............+++     +..+.++++|+.||.++.    +|.++|+..
T Consensus       453 TG~~~W~~~~~~~~~~g~l-----~TagglVf~G~~dg~l~A----~Da~tGe~l  498 (571)
T d2ad6a1         453 TGKAKWTKWEKFAAWGGTL-----YTKGGLVWYATLDGYLKA----LDNKDGKEL  498 (571)
T ss_dssp             TCCEEEEEEESSCCCSBCE-----EETTTEEEEECTTSEEEE----EETTTCCEE
T ss_pred             CCceeeEcCCCCCCCccee-----EecCCEEEEECCCCeEEE----EECCCCcEE
Confidence            8888877642212222222     123557888999999999    999998876

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.11  E-value=0.00062  Score=59.38  Aligned_cols=281  Identities=15%  Similarity=0.140  Sum_probs=154.8

Q ss_pred             CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc----------E-EEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC
Q 016458           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAW----------V-MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL  148 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  148 (389)
                      ..|+.++.++.|.-.|..+|+.+-++......          + ..++.  .+..++.+..++.+.-.|..+++      
T Consensus        67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~------  138 (560)
T d1kv9a2          67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGK------  138 (560)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCC------
T ss_pred             CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCc------
Confidence            36677778899999999999999876422110          0 00111  13456777778877777776654      


Q ss_pred             cceeeecc--ccc--ceEEEEEeeCCCcEEEEee------CCCeEEEEeCCCCeeEEEecCcccCC--------------
Q 016458          149 PVSRMLSG--HKG--YVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSG--------------  204 (389)
Q Consensus       149 ~~~~~~~~--~~~--~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~--------------  204 (389)
                       .......  +..  .++.--..-+  ..++.+.      ..|.|.-+|.++++.+..+.......              
T Consensus       139 -~~w~~~~~~~~~~~~~~~~p~v~~--~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~  215 (560)
T d1kv9a2         139 -AIWSQQTTDPAKPYSITGAPRVVK--GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAK  215 (560)
T ss_dssp             -EEEEEECSCTTSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred             -EEeccCccCcccceeeeeeeeeec--CcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccc
Confidence             1111111  000  0100001112  2344433      23789999999999998875321100              


Q ss_pred             -----------CCCCe-eEEEeeCCCCcEEEEeeC-------------------CCceEEEeCCCCCcceeEEeeeccc-
Q 016458          205 -----------HTADV-LSVSISGSNSRMFVSGSC-------------------DSTARLWDTRVASRAVRTFHGHEGD-  252 (389)
Q Consensus       205 -----------~~~~v-~~~~~~~~~~~~l~~~~~-------------------dg~i~i~d~~~~~~~~~~~~~~~~~-  252 (389)
                                 ....+ ..+++.+ ...+++.+..                   ...|.-.|++++ +..-.++..... 
T Consensus       216 ~~~~~~~~~~~~G~~~W~~~s~D~-~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG-~~~W~~Q~~~~D~  293 (560)
T d1kv9a2         216 TWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG-KLAWHYQVTPGDS  293 (560)
T ss_dssp             TCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-CEEEEEESSTTCC
T ss_pred             cccccccccccCCCCccccccccc-ccCeeeecCCCCcccccccccccCCccccceeeEEecCCcc-ceeEEEecccccc
Confidence                       00111 1245555 4444443221                   234566677766 433333322111 


Q ss_pred             --------eEEEEEecCC---CEEEEEecCCeEEEEECCCCceeeEeeccCCC---------------------------
Q 016458          253 --------VNTVKFFPDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE---------------------------  294 (389)
Q Consensus       253 --------i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---------------------------  294 (389)
                              ..-+....++   ..++.+..+|.+.++|..+++.+.........                           
T Consensus       294 wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  373 (560)
T d1kv9a2         294 WDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVM  373 (560)
T ss_dssp             SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEE
T ss_pred             ccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceee
Confidence                    1112222233   36778889999999999999877654322100                           


Q ss_pred             ----CCCCCeeEEEeCCCCCEEEEEec------------------------------------CCcEEEEEcccceEEEe
Q 016458          295 ----NEIPHVTSIAFSISGRLLFAGYS------------------------------------NGDCYVWDTLLAKVVLN  334 (389)
Q Consensus       295 ----~~~~~i~~~~~~~~~~~l~~~~~------------------------------------dg~i~i~d~~~~~~~~~  334 (389)
                          .....-...+++|+..++++...                                    .|.|.-||+.+++....
T Consensus       374 ~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~  453 (560)
T d1kv9a2         374 WPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWK  453 (560)
T ss_dssp             SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEE
T ss_pred             eeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeee
Confidence                00000124566777776665432                                    24678899999999887


Q ss_pred             ecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          335 LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       335 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      ....     .+..+-...-.+.++++|+.||.++.    +|.++|+..
T Consensus       454 ~~~~-----~~~~gg~l~TagglVF~G~~dg~l~A----~Da~tGe~L  492 (560)
T d1kv9a2         454 VPYP-----THWNGGTLSTAGNLVFQGTAAGQMHA----YSADKGEAL  492 (560)
T ss_dssp             EEES-----SSCCCCEEEETTTEEEEECTTSEEEE----EETTTCCEE
T ss_pred             ccCC-----CCCCCceeEECCCEEEEECCCCcEEE----EECCCCcEe
Confidence            7431     11211112234667888999999999    999999876

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.10  E-value=0.0014  Score=57.35  Aligned_cols=285  Identities=14%  Similarity=0.100  Sum_probs=155.4

Q ss_pred             CCCeEEEEecCCcEEEEeC-CCCCeeEEEeeCCC----------cE-EEEEECCC----CcEEEEecCCCcEEEEeCCCC
Q 016458           78 ERNRIVSASQDGRLIVWNA-LTSQKTHAIKLPCA----------WV-MTCAFSPT----GQSVACGGLDSVCSIFNLNSP  141 (389)
Q Consensus        78 ~~~~l~~~~~dg~v~iw~~-~~~~~~~~~~~~~~----------~v-~~~~~~~~----~~~l~~~~~dg~i~vw~~~~~  141 (389)
                      ++.++++++.++.|...|. .+|+.+-.+.....          .+ +.+++.++    ..+++.++.|+.+.-.|..++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            4434445555677888886 57888877653211          01 22344332    346888888999888888876


Q ss_pred             CCCCCCCcceeeecc---cc-cceEEEEEeeCCCcEEEEeeC------CCeEEEEeCCCCeeEEEecCccc---------
Q 016458          142 TDKDGNLPVSRMLSG---HK-GYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQ---------  202 (389)
Q Consensus       142 ~~~~~~~~~~~~~~~---~~-~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~---------  202 (389)
                      +       ....+..   +. ..++.--..-.  ..++.+..      .|.|+-+|..+++.+..+.....         
T Consensus       142 ~-------~~w~~~~~d~~~~~~~t~~P~v~~--~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~  212 (596)
T d1w6sa_         142 E-------TVWKVENSDIKVGSTLTIAPYVVK--DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASD  212 (596)
T ss_dssp             C-------EEEEEECCCGGGTCBCCSCCEEET--TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTT
T ss_pred             c-------eeccccccccccccccccCCcEEC--CeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccc
Confidence            5       2222110   11 11111111112  34555543      48999999999999987642100         


Q ss_pred             ------------------------CCCCCCeeEEEeeCCCCcEEEEeeCC----------------CceEEEeCCCCCcc
Q 016458          203 ------------------------SGHTADVLSVSISGSNSRMFVSGSCD----------------STARLWDTRVASRA  242 (389)
Q Consensus       203 ------------------------~~~~~~v~~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~  242 (389)
                                              ......-..+++.+ ..++++.+..+                ..|.-.|++++ +.
T Consensus       213 ~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~-~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG-~~  290 (596)
T d1w6sa_         213 FNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG-EA  290 (596)
T ss_dssp             TTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC-CE
T ss_pred             cccccccccccccccccCCCCceecCCCcccccccccc-CCCeeecccccccccccccccccccccccccccccccc-cc
Confidence                                    00011122345566 44455444322                34667788777 44


Q ss_pred             eeEEee--ec-------cceEEEEE-ecCC---CEEEEEecCCeEEEEECCCCceeeEeeccCCCC--------------
Q 016458          243 VRTFHG--HE-------GDVNTVKF-FPDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN--------------  295 (389)
Q Consensus       243 ~~~~~~--~~-------~~i~~~~~-~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--------------  295 (389)
                      .-.++.  |.       ..+.-+.. ..++   +.++....+|.+.++|..+++.+..........              
T Consensus       291 ~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~  370 (596)
T d1w6sa_         291 KFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVR  370 (596)
T ss_dssp             EEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEE
T ss_pred             cccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecccccccccccccccccccccc
Confidence            433332  11       11111221 1233   357788899999999999998775433211000              


Q ss_pred             -------C-------------CCCeeEEEeCCCCCEEEEEec--------------------------------------
Q 016458          296 -------E-------------IPHVTSIAFSISGRLLFAGYS--------------------------------------  317 (389)
Q Consensus       296 -------~-------------~~~i~~~~~~~~~~~l~~~~~--------------------------------------  317 (389)
                             .             ...-...+++|+..+++....                                      
T Consensus       371 ~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~  450 (596)
T d1w6sa_         371 DPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYE  450 (596)
T ss_dssp             CGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTB
T ss_pred             CccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccCcccCcccCC
Confidence                   0             000123456666555554321                                      


Q ss_pred             -CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          318 -NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       318 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                       -|.|.-||+.+++.............+.+     +..|.+++.|+.||.++.    +|.++|+..
T Consensus       451 ~~G~l~A~D~~TG~~~W~~~~~~~~~gg~l-----sTagglVF~G~~Dg~l~A----~Da~TGe~L  507 (596)
T d1w6sa_         451 GLGQIKAYNAITGDYKWEKMERFAVWGGTM-----ATAGDLVFYGTLDGYLKA----RDSDTGDLL  507 (596)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCE-----EETTTEEEEECTTSEEEE----EETTTCCEE
T ss_pred             CcceEEEEeCCCCceecccCCCCCCcccee-----EecCCEEEEECCCCeEEE----EECCCCcEe
Confidence             14677888888888776532111222222     234667888999999999    999999876

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.08  E-value=0.0012  Score=51.00  Aligned_cols=257  Identities=9%  Similarity=0.137  Sum_probs=153.9

Q ss_pred             CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEe
Q 016458           88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV  167 (389)
Q Consensus        88 dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (389)
                      ...|.|.|+.++......+...   .+.-.+|..+.||.-+ ...+.++|+++..       ..+... ...+|.--.|.
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~A---dsAIMhP~~~IiALra-g~~LQiFnletK~-------klks~~-~~e~VvfWkWi  111 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPISA---DSAIMNPASKVIALKA-GKTLQIFNIEMKS-------KMKAHT-MTDDVTFWKWI  111 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECCC---SEEEECSSSSEEEEEE-TTEEEEEETTTTE-------EEEEEE-CSSCCCEEEES
T ss_pred             CceEEEEECCCCCcceecccch---hhhhcCCCCcEEEEec-CCeEEEEehhHhh-------hhceEE-cCCCcEEEEec
Confidence            3578899998776544433322   2444678888887766 5689999998743       222222 23466666777


Q ss_pred             eCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-------CCCceEEEeCCCC
Q 016458          168 PDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-------CDSTARLWDTRVA  239 (389)
Q Consensus       168 ~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~  239 (389)
                      .+.  .|+..+ +..|+-|+++.. .+...+.... .-....|..-..++ +.+.++..+       -.|.+.+|..+. 
T Consensus       112 s~~--~L~lVT-~taVYHW~~~g~s~P~k~fdR~~-~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~er-  185 (327)
T d1utca2         112 SLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHS-SLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDR-  185 (327)
T ss_dssp             SSS--EEEEEC-SSEEEEEESSSSCCCEEEEECCG-GGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTT-
T ss_pred             CCC--EEEEEc-CCceEEEcccCCCCchhhhhhcc-cccCceEEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEecc-
Confidence            653  444443 357999999543 3444443221 12345677777777 555544322       246788999874 


Q ss_pred             CcceeEEeeeccceEEEEEecCC---CEEEEEe---cCCeEEEEECCCCc---ee-----eEeeccCCCCCCCCeeEEEe
Q 016458          240 SRAVRTFHGHEGDVNTVKFFPDG---NRFGTGS---DDGTCRLFDIRTGH---QL-----QVYYQQHGENEIPHVTSIAF  305 (389)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~---~dg~i~i~d~~~~~---~~-----~~~~~~~~~~~~~~i~~~~~  305 (389)
                       ..-+.+.+|......+.+..+.   +.++.+.   ..+++.+.++....   ..     ..+..+. .....-..++..
T Consensus       186 -~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fpp-ea~~DFPvamqv  263 (327)
T d1utca2         186 -KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP-EAQNDFPVAMQI  263 (327)
T ss_dssp             -TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCT-TCTTCCEEEEEE
T ss_pred             -CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCc-cccCCcEEEEEe
Confidence             4556677776555444432211   2333322   34689999886522   11     1111111 111223567888


Q ss_pred             CCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458          306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK  368 (389)
Q Consensus       306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  368 (389)
                      ++.-..++.-+.-|.+++||+.++..+..-    +-...+|..-+-+.+..=++....+|.|.
T Consensus       264 s~kygiiyviTK~G~i~lyDleTgt~i~~n----RIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         264 SEKHDVVFLITKYGYIHLYDLETGTCIYMN----RISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             ETTTTEEEEEETTSEEEEEETTTCCEEEEE----ECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             eccCCEEEEEecCcEEEEEEcccccEEEEe----ecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            888889999999999999999999998876    34455666555444444455555666653

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.04  E-value=0.0023  Score=56.08  Aligned_cols=263  Identities=14%  Similarity=0.125  Sum_probs=147.0

Q ss_pred             CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcE-EEEEECC--CCcEEEEecC------CCcEEEEeCCCCCCCCCCCcc
Q 016458           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWV-MTCAFSP--TGQSVACGGL------DSVCSIFNLNSPTDKDGNLPV  150 (389)
Q Consensus        80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v-~~~~~~~--~~~~l~~~~~------dg~i~vw~~~~~~~~~~~~~~  150 (389)
                      .+++.++.|+.|.-.|..+|+.+..+....... ..+.-.|  -+..++++..      .|.|+-+|..+++.       
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~-------  194 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQ-------  194 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCE-------
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcE-------
Confidence            368888999999999999999988875422100 0111111  1344555532      48888899888662       


Q ss_pred             eeeec-------------------------------------ccccc-eEEEEEeeCCCcEEEEeeC-------------
Q 016458          151 SRMLS-------------------------------------GHKGY-VSCCQYVPDEDTHLITSSG-------------  179 (389)
Q Consensus       151 ~~~~~-------------------------------------~~~~~-v~~~~~~~~~~~~l~~~~~-------------  179 (389)
                      .-.+.                                     .-... -..+++.+.. .+++.+..             
T Consensus       195 ~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~-~lvy~~tg~~~p~~~~~r~g~  273 (596)
T d1w6sa_         195 VWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGD  273 (596)
T ss_dssp             EEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSC
T ss_pred             EEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCC-Ceeeccccccccccccccccc
Confidence            11100                                     00011 1223445544 34443322             


Q ss_pred             ---CCeEEEEeCCCCeeEEEecCcccCCC----CCCeeEEEeeCCC---CcEEEEeeCCCceEEEeCCCCCcceeEEeee
Q 016458          180 ---DQTCVLWDITTGLRTSVFGGEFQSGH----TADVLSVSISGSN---SRMFVSGSCDSTARLWDTRVASRAVRTFHGH  249 (389)
Q Consensus       180 ---dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  249 (389)
                         ...|...|+.+++....+........    ......+.....+   ...++....+|.+.++|..++ +.+......
T Consensus       274 n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG-~~i~~~~~~  352 (596)
T d1w6sa_         274 NKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG-ALVSANKLD  352 (596)
T ss_dssp             CTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTC-CEEEEEESS
T ss_pred             ccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCC-ceeeecccc
Confidence               34588899999998887743211110    1112222211112   246777888999999998776 333221100


Q ss_pred             c-------------cc--------------------------eEEEEEecCCCEEEEEec--------------------
Q 016458          250 E-------------GD--------------------------VNTVKFFPDGNRFGTGSD--------------------  270 (389)
Q Consensus       250 ~-------------~~--------------------------i~~~~~~~~~~~l~~~~~--------------------  270 (389)
                      .             .+                          -...+++|+..+++....                    
T Consensus       353 ~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~  432 (596)
T d1w6sa_         353 DTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFV  432 (596)
T ss_dssp             TTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred             ccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccc
Confidence            0             00                          012455665555544321                    


Q ss_pred             -------------------CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE
Q 016458          271 -------------------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  331 (389)
Q Consensus       271 -------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (389)
                                         -|.|.-||+.+++..........      ...-.++..|.++++|+.||.++.+|..+|+.
T Consensus       433 g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~------~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~  506 (596)
T d1w6sa_         433 GATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFA------VWGGTMATAGDLVFYGTLDGYLKARDSDTGDL  506 (596)
T ss_dssp             CEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccccccccCcccCcccCCCcceEEEEeCCCCceecccCCCCC------CccceeEecCCEEEEECCCCeEEEEECCCCcE
Confidence                               15678888888887766544322      11222334577888999999999999999999


Q ss_pred             EEeecCcCCCCCCCeeEEEECCCCC-eEEe
Q 016458          332 VLNLGSLQNSHEGRITCLGLSADGS-ALCT  360 (389)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~  360 (389)
                      +.++......+..+++   |..||+ |++.
T Consensus       507 LW~~~~~~~~~a~P~t---Y~~dGkQYvav  533 (596)
T d1w6sa_         507 LWKFKIPSGAIGYPMT---YTHKGTQYVAI  533 (596)
T ss_dssp             EEEEECSSCCCSCCEE---EEETTEEEEEE
T ss_pred             eeEEECCCCcccCCeE---EEECCEEEEEE
Confidence            9998654444445544   334665 4443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.00  E-value=0.0017  Score=50.04  Aligned_cols=230  Identities=11%  Similarity=0.102  Sum_probs=137.5

Q ss_pred             EEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcce
Q 016458           72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS  151 (389)
Q Consensus        72 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  151 (389)
                      +.-.+|..+.||.-+ ..++.+||+++.+.+..+..+. +|.--.|-.+..+-++.  +..|+-|+++...      ...
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lVT--~taVYHW~~~g~s------~P~  136 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT--DNAVYHWSMEGES------QPV  136 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSSEEEEEC--SSEEEEEESSSSC------CCE
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCCEEEEEc--CCceEEEcccCCC------Cch
Confidence            344677777777765 4589999999999999888775 57777786555443332  4579999996532      133


Q ss_pred             eeecccc----cceEEEEEeeCCCcEEEEe------eCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC--CCC
Q 016458          152 RMLSGHK----GYVSCCQYVPDEDTHLITS------SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG--SNS  219 (389)
Q Consensus       152 ~~~~~~~----~~v~~~~~~~~~~~~l~~~------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~  219 (389)
                      +.+..|.    ..|..-..+++.+-++++|      .-.|.+.+|..+.+... .+     .+|......+.+..  ...
T Consensus       137 k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ-~i-----eGhaa~F~~~~~~g~~~~~  210 (327)
T d1utca2         137 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PI-----EGHAASFAQFKMEGNAEES  210 (327)
T ss_dssp             EEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE-EE-----CCSEEEEEEECCTTCSSCE
T ss_pred             hhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc-cc-----cceeeeeEEEEcCCCCCCc
Confidence            4444442    3555556666654334433      12477889998876433 33     45554444443321  011


Q ss_pred             cEEEEee---CCCceEEEeCCCCCc---ce--eEE---ee---eccceEEEEEecCCCEEEEEecCCeEEEEECCCCcee
Q 016458          220 RMFVSGS---CDSTARLWDTRVASR---AV--RTF---HG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL  285 (389)
Q Consensus       220 ~~l~~~~---~dg~i~i~d~~~~~~---~~--~~~---~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  285 (389)
                      .+++.+.   ..+.+++.++.....   +.  +..   .+   ...-..++..++....++..+.-|.|.+||+.++.++
T Consensus       211 ~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i  290 (327)
T d1utca2         211 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI  290 (327)
T ss_dssp             EEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred             eEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEE
Confidence            2333222   236888888865321   11  111   11   1234567888888889999999999999999999988


Q ss_pred             eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEE
Q 016458          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY  322 (389)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  322 (389)
                      ..-......     |-..+-..+..=+++...+|.|.
T Consensus       291 ~~nRIs~~~-----iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         291 YMNRISGET-----IFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEECCSSC-----EEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEeecCCCc-----eEEeccCCCCceEEEECCCCeEE
Confidence            766553332     44333333333344444566554

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.96  E-value=0.0027  Score=55.42  Aligned_cols=282  Identities=13%  Similarity=0.127  Sum_probs=149.2

Q ss_pred             eEEEEecCCcEEEEeCCCCCeeEEEeeCCC----------cE-EEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCc
Q 016458           81 RIVSASQDGRLIVWNALTSQKTHAIKLPCA----------WV-MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLP  149 (389)
Q Consensus        81 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  149 (389)
                      .|+.++.++.|.-+|..+|+.+-.+.....          .+ ..+.+.  ...++.++.++.+.-.|..+++..     
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~-----  151 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEV-----  151 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEE-----
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccce-----
Confidence            677778889999999999999887653210          00 011111  234556666777776776665410     


Q ss_pred             ceeeec-ccccce--EEEEEeeCCCcEEEEeeC------CCeEEEEeCCCCeeEEEecCcccCCC---------------
Q 016458          150 VSRMLS-GHKGYV--SCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQSGH---------------  205 (389)
Q Consensus       150 ~~~~~~-~~~~~v--~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~---------------  205 (389)
                      ...... .....+  +..-....  ..++.++.      .|.|+.+|..+++.+..+........               
T Consensus       152 W~~~~~~~~~~~~~~~~~p~v~~--~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~  229 (573)
T d1kb0a2         152 WHQNTFEGQKGSLTITGAPRVFK--GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW  229 (573)
T ss_dssp             EEEETTTTCCSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred             ecccCccCCcceEEeecceEEEe--ccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCccccccccccc
Confidence            001110 000100  00001112  23454432      47899999999999887643211100               


Q ss_pred             -----------CCCe-eEEEeeCCCCcEEEEeeC-------------------CCceEEEeCCCCCcceeEEeeec----
Q 016458          206 -----------TADV-LSVSISGSNSRMFVSGSC-------------------DSTARLWDTRVASRAVRTFHGHE----  250 (389)
Q Consensus       206 -----------~~~v-~~~~~~~~~~~~l~~~~~-------------------dg~i~i~d~~~~~~~~~~~~~~~----  250 (389)
                                 ...+ ...++.+ ...+++.+..                   ...|.-.|.+++ +..-.++...    
T Consensus       230 ~~~~~~~~~~~G~~vW~~~s~D~-~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG-~~~W~~q~~~~d~w  307 (573)
T d1kb0a2         230 DPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG-KYKWHYQETPGDNW  307 (573)
T ss_dssp             CGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-CEEEEEESSTTCCS
T ss_pred             CCCCceeecCCCCcccccceEch-hhCeeeeccCCCccccccccccccccccccceEEEecccch-heeecccccCcccc
Confidence                       0111 1244555 3333333221                   113445555555 3222222111    


Q ss_pred             -----cceEEEEEecCC---CEEEEEecCCeEEEEECCCCceeeEeeccCCC----------------------------
Q 016458          251 -----GDVNTVKFFPDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE----------------------------  294 (389)
Q Consensus       251 -----~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------------------------  294 (389)
                           .+........++   ..++.++.+|.+.++|..+++.+.........                            
T Consensus       308 d~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  387 (573)
T d1kb0a2         308 DYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVP  387 (573)
T ss_dssp             CCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSS
T ss_pred             cccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEee
Confidence                 111222222233   45778889999999999999887654322110                            


Q ss_pred             --CCCCCeeEEEeCCCCCEEEEEecC-------------------------------------------CcEEEEEcccc
Q 016458          295 --NEIPHVTSIAFSISGRLLFAGYSN-------------------------------------------GDCYVWDTLLA  329 (389)
Q Consensus       295 --~~~~~i~~~~~~~~~~~l~~~~~d-------------------------------------------g~i~i~d~~~~  329 (389)
                        .....-..++++|+..++++...+                                           |.+.-||+.++
T Consensus       388 g~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tG  467 (573)
T d1kb0a2         388 GPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ  467 (573)
T ss_dssp             CTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT
T ss_pred             cccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCC
Confidence              000011234677776666653322                                           35777888888


Q ss_pred             eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          330 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      +.+...........+   .+  +-.|.++++|+.||.++.    +|.++|+..
T Consensus       468 k~~W~~~~~~p~~gg---~l--stagglVF~G~~dg~l~A----~Da~TGe~L  511 (573)
T d1kb0a2         468 KAAWSVEHVSPWNGG---TL--TTAGNVVFQGTADGRLVA----YHAATGEKL  511 (573)
T ss_dssp             EEEEEEEESSSCCCC---EE--EETTTEEEEECTTSEEEE----EETTTCCEE
T ss_pred             ceEeeecCCCCCCCc---eE--EEcCCEEEEECCCCeEEE----EECCCCcEe
Confidence            888877421111111   12  225678888999999999    999999876

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.91  E-value=0.0045  Score=51.91  Aligned_cols=245  Identities=11%  Similarity=0.040  Sum_probs=130.0

Q ss_pred             cEEEEEEcCCCCeEEEEe-c----CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC-------------
Q 016458           69 KVYSLDWTSERNRIVSAS-Q----DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD-------------  130 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~-~----dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------  130 (389)
                      .+..+++||+++++|.+- .    ...++++|+.+++.+...- .......++|.++++.|+-...+             
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            456778999999888432 2    2479999999998764321 11122568899999987654322             


Q ss_pred             ---CcEEEEeCCCCCCCCCCCcceeeecc--cccceEEEEEeeCCCcEEEEee--CCCe--EEEEeCCCCee--------
Q 016458          131 ---SVCSIFNLNSPTDKDGNLPVSRMLSG--HKGYVSCCQYVPDEDTHLITSS--GDQT--CVLWDITTGLR--------  193 (389)
Q Consensus       131 ---g~i~vw~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~--~dg~--i~iwd~~~~~~--------  193 (389)
                         ..|..+.+.++...     -...+..  ....+..+..++++..+++...  .+..  +.+.|+.....        
T Consensus       205 ~~~~~v~~h~lgt~~~~-----d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  279 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSE-----DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (430)
T ss_dssp             CCCCEEEEEETTSCGGG-----CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             CCcceEEEEECCCCccc-----cccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccce
Confidence               25777777664311     1122222  2234556667777744343332  2333  44445433211        


Q ss_pred             EEEecCcccCCCCCCeeEEEeeCCCCcEEEEee---CCCceEEEeCCCCCcc-eeEEe-eeccceEEEEEecCCCEEEEE
Q 016458          194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRA-VRTFH-GHEGDVNTVKFFPDGNRFGTG  268 (389)
Q Consensus       194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~l~~~  268 (389)
                      ....     ........-+...  ++.+++...   .++.|...++...... ...+- .+...+..-.+...+.+|+..
T Consensus       280 ~~~~-----~~~~~~~~~~~~~--~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~  352 (430)
T d1qfma1         280 VKLI-----DNFEGEYDYVTNE--GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC  352 (430)
T ss_dssp             EEEE-----CSSSSCEEEEEEE--TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred             eEee-----cccccceEEEecC--CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEE
Confidence            1111     1222222322222  334444333   2466777777655322 23333 344445544444455566655


Q ss_pred             e-cCC--eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec----CCcEEEEEcccceE
Q 016458          269 S-DDG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS----NGDCYVWDTLLAKV  331 (389)
Q Consensus       269 ~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~  331 (389)
                      . .++  .|+++++.++..........     ..+..+...++...+.....    -.+++-+|+.+++.
T Consensus       353 ~~~~~~~~l~v~~~~~~~~~~~~~~~~-----~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         353 YLHDVKNTLQLHDLATGALLKIFPLEV-----GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EEETTEEEEEEEETTTCCEEEEECCCS-----SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EEcCCEeEEEEEECCCCcEEEecCCCC-----ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            4 554  58899998877655443322     23555555566554444322    25788899887753

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.86  E-value=0.0029  Score=51.60  Aligned_cols=193  Identities=9%  Similarity=0.032  Sum_probs=116.0

Q ss_pred             CCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC-CCCcEEEEeeCCC------------------
Q 016458          169 DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG-SNSRMFVSGSCDS------------------  229 (389)
Q Consensus       169 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg------------------  229 (389)
                      ||..+++.-..++.|.+.|+.+.+......    ......+..+...+ .+..+++.++.+.                  
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~----iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILE----IPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEE----CSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEe----cCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence            564445555678999999999998876553    13344556555543 1555666655522                  


Q ss_pred             ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCC-------------------------------------
Q 016458          230 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-------------------------------------  272 (389)
Q Consensus       230 ~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------------------------------------  272 (389)
                      .+..+|..+. +...+.. -.+....+.++|+|+++++.+.+.                                     
T Consensus       174 ~~t~ID~~tm-~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei  251 (459)
T d1fwxa2         174 VFTAVDADKW-EVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  251 (459)
T ss_dssp             EEEEEETTTT-EEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             EEEEEecCCc-eEEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe
Confidence            3567787765 3333333 234567899999999998877431                                     


Q ss_pred             -eEEEEECCCC---ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEcccceEEE--------eecCcC
Q 016458          273 -TCRLFDIRTG---HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVL--------NLGSLQ  339 (389)
Q Consensus       273 -~i~i~d~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~--------~~~~~~  339 (389)
                       .+.+-|.+..   ..+..+....      ....+.++|||+++++++ .+..+.|+|++.-....        .+.. .
T Consensus       252 ngV~VVD~~~~~~~~v~~yIPVpK------sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~-e  324 (459)
T d1fwxa2         252 NGVKVVDGRKEASSLFTRYIPIAN------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA-E  324 (459)
T ss_dssp             TTEEEEECSGG--CSSEEEEEEES------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEE-C
T ss_pred             CCceeecccccCCcceeEEEecCC------CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEe-e
Confidence             2233343321   1111122211      145789999999887765 57899999986321110        0000 0


Q ss_pred             CCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458          340 NSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE  378 (389)
Q Consensus       340 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~  378 (389)
                      ....-....-+|+..|....|---|..|.-    |++..
T Consensus       325 ~elglgPLht~fd~~g~aytslfids~v~k----w~~~~  359 (459)
T d1fwxa2         325 PELGLGPLHTAFDGRGNAYTSLFLDSQVVK----WNIED  359 (459)
T ss_dssp             CBCCSCEEEEEECTTSEEEEEETTTTEEEE----EEHHH
T ss_pred             cccCcCccccccCCCceEEEEeeccceEEE----Eecch
Confidence            112233456789888876666678999988    99864

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.74  E-value=0.011  Score=51.38  Aligned_cols=80  Identities=10%  Similarity=0.097  Sum_probs=52.2

Q ss_pred             CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEE
Q 016458          272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  351 (389)
Q Consensus       272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  351 (389)
                      |.+.-||+.+++.+.........      ..-..+..|.++++|+.||.++.+|..+|+.+.++......+..++   .|
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~------~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~---ty  527 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPW------NGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPS---TY  527 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE---EE
T ss_pred             ccEEEeCCCCCceEeeecCCCCC------CCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCE---EE
Confidence            35677788877777666543221      1112233677899999999999999999999999865433344443   34


Q ss_pred             CCCCC-eEEe
Q 016458          352 SADGS-ALCT  360 (389)
Q Consensus       352 ~~~~~-~l~~  360 (389)
                      ..+|+ |++.
T Consensus       528 ~~~GkQYv~v  537 (573)
T d1kb0a2         528 MVDGRQYVSV  537 (573)
T ss_dssp             EETTEEEEEE
T ss_pred             EECCEEEEEE
Confidence            44676 4433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.71  E-value=0.013  Score=51.14  Aligned_cols=55  Identities=22%  Similarity=0.204  Sum_probs=39.0

Q ss_pred             CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458          319 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS  382 (389)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~  382 (389)
                      |.|.-+|+.+++........     .++.+-..+..+.++++|+.||.++.    +|.++|+..
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-----~p~~~g~lstagglVF~Gt~dg~l~A----~Da~TGe~L  520 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-----LPLWAGVLATAGNLVFTGTGDGYFKA----FDAKSGKEL  520 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-----SCCCSCCEEETTTEEEEECTTSEEEE----EETTTCCEE
T ss_pred             CeEEEEcCCCCcEEeecCCC-----CCCccceeEEcCCeEEEeCCCCeEEE----EECCCCcEe
Confidence            56888888899888877422     12221112235668888999999999    999999876

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.42  E-value=0.022  Score=46.59  Aligned_cols=252  Identities=10%  Similarity=0.126  Sum_probs=129.9

Q ss_pred             cEEEEEECCCCcEEEEecCCC-----------cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC
Q 016458          111 WVMTCAFSPTGQSVACGGLDS-----------VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG  179 (389)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg-----------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  179 (389)
                      ++.......+|+.++.|+.+.           .+.+||..++.-.    ........+........+.+++ .+++.|+.
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~----~~~~~~~~~~~~~~~~~~~~~g-~i~v~Gg~   95 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS----DRTVTVTKHDMFCPGISMDGNG-QIVVTGGN   95 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC----CCEEEECSCCCSSCEEEECTTS-CEEEECSS
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEe----ecCCCCCCcccceeEEEEecCC-cEEEeecC
Confidence            344444556777777776421           3678999875411    0111112233334456777887 67777765


Q ss_pred             C-CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC------CceEEEeCCCCCcceeEEee----
Q 016458          180 D-QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHG----  248 (389)
Q Consensus       180 d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~----  248 (389)
                      + ..+.+||..+......-.    ......-.+.+..+ ++++++.|+.+      ..+.+||..+..  ...+..    
T Consensus        96 ~~~~~~~yd~~~~~w~~~~~----~~~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~  168 (387)
T d1k3ia3          96 DAKKTSLYDSSSDSWIPGPD----MQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT--WTSLPNAKVN  168 (387)
T ss_dssp             STTCEEEEEGGGTEEEECCC----CSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE--EEEETTSCSG
T ss_pred             CCcceeEecCccCccccccc----ccccccccceeeec-CCceeeeccccccccccceeeeecCCCCc--eeecCCCccc
Confidence            4 689999998876644321    11222234555565 77888887653      368899987641  111110    


Q ss_pred             ------ec-----cceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCC---CCCCeeEEEe-CCCCCEEE
Q 016458          249 ------HE-----GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN---EIPHVTSIAF-SISGRLLF  313 (389)
Q Consensus       249 ------~~-----~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~~i~~~~~-~~~~~~l~  313 (389)
                            +.     ..-..+...++++.++.++.++.+.+++..+..............   ....-.++.+ ..+++.++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v  248 (387)
T d1k3ia3         169 PMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILT  248 (387)
T ss_dssp             GGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEE
T ss_pred             ccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEE
Confidence                  00     001123334577778888878888888877654432221111110   0001122222 34667777


Q ss_pred             EEecCC--------cEEEEEccc---ce-EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC-----------eeEEe
Q 016458          314 AGYSNG--------DCYVWDTLL---AK-VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-----------NLKVN  370 (389)
Q Consensus       314 ~~~~dg--------~i~i~d~~~---~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~i~i~  370 (389)
                      .|+...        ...+.++..   .. .......  ..+...-.+....+||++++.|+.+.           .+.+ 
T Consensus       249 ~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~-  325 (387)
T d1k3ia3         249 FGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG--LYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEI-  325 (387)
T ss_dssp             ECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTC--CSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEE-
T ss_pred             EEeccCCCCCcccceeecccccccccCCCceeeccc--cccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEE-
Confidence            765422        233333321   11 1112211  11111223455668999999988542           3456 


Q ss_pred             ecceecccCc
Q 016458          371 LGFWRVQEGA  380 (389)
Q Consensus       371 ~~~W~~~~~~  380 (389)
                         ||..+++
T Consensus       326 ---Ydp~~~~  332 (387)
T d1k3ia3         326 ---YVPEQDT  332 (387)
T ss_dssp             ---EEGGGTE
T ss_pred             ---EECCCCe
Confidence               8877664

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.06  E-value=0.079  Score=45.96  Aligned_cols=80  Identities=18%  Similarity=0.199  Sum_probs=55.9

Q ss_pred             CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEE
Q 016458          272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  351 (389)
Q Consensus       272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  351 (389)
                      |.|.-+|+.+++...........      ..-.++..|.++++|+.||.++.+|..+|+.+.++......+..+   +.|
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~------~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty  536 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPL------WAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP---ITW  536 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCC------CSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCC------ccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC---EEE
Confidence            67888899999888777654322      221233467788899999999999999999999986443344444   445


Q ss_pred             CCCCC-eEEe
Q 016458          352 SADGS-ALCT  360 (389)
Q Consensus       352 ~~~~~-~l~~  360 (389)
                      ..+|+ |++.
T Consensus       537 ~~~G~qYv~i  546 (582)
T d1flga_         537 EQDGEQYLGV  546 (582)
T ss_dssp             EETTEEEEEE
T ss_pred             EECCEEEEEE
Confidence            56775 4443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.02  E-value=0.037  Score=44.73  Aligned_cols=185  Identities=14%  Similarity=0.054  Sum_probs=98.6

Q ss_pred             ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-------eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceE
Q 016458          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR  232 (389)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  232 (389)
                      ...-++.++.. .++++|+.++ +.|.....-       .....+..   ...-..|..++++. +  .+++. .++.+.
T Consensus        38 ~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~---~~~ip~v~~vafs~-d--~l~v~-~~~~l~  108 (381)
T d1xipa_          38 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW---EKEIPDVIFVCFHG-D--QVLVS-TRNALY  108 (381)
T ss_dssp             CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE---EEECTTEEEEEEET-T--EEEEE-ESSEEE
T ss_pred             ccceEEEeCCC-CEEEEECCCE-EEEEEHHHHHHHhhccCCCCccee---ccCCCCeEEEEeeC-C--EEEEE-eCCCEE
Confidence            34567777764 5777777775 556553210       00000100   01112588888874 2  34443 456788


Q ss_pred             EEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEE
Q 016458          233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL  312 (389)
Q Consensus       233 i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (389)
                      .++.... ........-..++..+.++|.  .++....+|.+.++++..+...................+++|++.|..+
T Consensus       109 ~~~~~~l-~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~  185 (381)
T d1xipa_         109 SLDLEEL-SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQS  185 (381)
T ss_dssp             EEESSST-TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEE
T ss_pred             EEEeecc-ccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEE
Confidence            8888765 333344444567788887765  5677778899999999987654332211111111236667777777666


Q ss_pred             EEEecCCcEEEE-EcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458          313 FAGYSNGDCYVW-DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  361 (389)
Q Consensus       313 ~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  361 (389)
                      +++..++ ..+- ++...   ..+... ......|.+|.|-.+..++++-
T Consensus       186 v~~~g~~-~q~k~~i~~~---~~~~~p-~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         186 FAWRNGE-MEKQFEFSLP---SELEEL-PVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEETTE-EEEEEEECCC---HHHHTS-CTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEeCCCc-eeeccCCCCc---cccCCC-cCCCcceeEEEEecCceEEEEE
Confidence            6653221 1111 11000   011100 1234578899998777766654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.01  E-value=0.055  Score=43.24  Aligned_cols=178  Identities=12%  Similarity=0.077  Sum_probs=90.1

Q ss_pred             CCcEEEEeCCCCCCCCCCCcceee-ecccccceEEEEE--eeCCCcEEEEee---CCCeEEEEeCCCCeeEEEecCcccC
Q 016458          130 DSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQY--VPDEDTHLITSS---GDQTCVLWDITTGLRTSVFGGEFQS  203 (389)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~--~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~  203 (389)
                      .|.|.++|+.........+..... .....-....+..  .+++..+|++..   ...+|.+|++...............
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            478888998764421111100000 0000112233333  234433455442   4567888887544322222222223


Q ss_pred             CCCCCeeEEEeeCCCCcEEEEee-----------------CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEE
Q 016458          204 GHTADVLSVSISGSNSRMFVSGS-----------------CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG  266 (389)
Q Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  266 (389)
                      ........+++.. ++.+++|-.                 ..+.+.-||..   . .......-...+.|+++|++++|+
T Consensus       147 ~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~---~-~~~~~~~l~~pNGI~~s~d~~~ly  221 (340)
T d1v04a_         147 KLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN---D-VRVVAEGFDFANGINISPDGKYVY  221 (340)
T ss_dssp             TTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS---C-EEEEEEEESSEEEEEECTTSSEEE
T ss_pred             ccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC---c-eEEEcCCCCccceeEECCCCCEEE
Confidence            3445578888887 667777621                 11233444432   2 223333345679999999998776


Q ss_pred             EE-ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC-CCCEEEEE
Q 016458          267 TG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAG  315 (389)
Q Consensus       267 ~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~  315 (389)
                      ++ +..+.|+.|++..............   ....-.+.+.+ +|.+.+++
T Consensus       222 Va~t~~~~i~~y~~~~~~~l~~~~~~~l---~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         222 IAELLAHKIHVYEKHANWTLTPLRVLSF---DTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEEC---SSEEEEEEECTTTCCEEEEE
T ss_pred             EEeCCCCeEEEEEeCCCcccceEEEecC---CCCCCccEEecCCCEEEEEE
Confidence            55 4678899999876543332222111   11256677776 45544443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.041  Score=44.50  Aligned_cols=181  Identities=12%  Similarity=0.032  Sum_probs=99.7

Q ss_pred             cEEEEEEcCCCCeEEEEecCCcEEEEeCC-----------CCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Q 016458           69 KVYSLDWTSERNRIVSASQDGRLIVWNAL-----------TSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (389)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (389)
                      ...-++.++...+++.|+.++ ++|..+.           .........  -..|..++|+.+  .|++. .++.+..++
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYSLD  111 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence            356788888777888888875 6676531           112222222  236899999754  45544 345677787


Q ss_pred             CCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC
Q 016458          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS  217 (389)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  217 (389)
                      ...-.       .......-..++..+.++|.   .++....+|.+.++++..+.............-...+.+++|++ 
T Consensus       112 ~~~l~-------~~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~-  180 (381)
T d1xipa_         112 LEELS-------EFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKD-  180 (381)
T ss_dssp             SSSTT-------CEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETT-
T ss_pred             eeccc-------cccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeC-
Confidence            76522       12222223456777777773   46777788999999998886543321110012235577777876 


Q ss_pred             CCcEEEEeeCCCceEEE-eCCCCCcceeEEeeeccceEEEEEecCCCEEEEE
Q 016458          218 NSRMFVSGSCDSTARLW-DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG  268 (389)
Q Consensus       218 ~~~~l~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  268 (389)
                      .+..++++..++ ..+- ++... ..+.........+.+|.|-.+..++++-
T Consensus       181 kgkq~v~~~g~~-~q~k~~i~~~-~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         181 RSFQSFAWRNGE-MEKQFEFSLP-SELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             SCEEEEEEETTE-EEEEEEECCC-HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CcEEEEEeCCCc-eeeccCCCCc-cccCCCcCCCcceeEEEEecCceEEEEE
Confidence            666666653221 1111 11111 1110001123357788888666555544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.83  E-value=0.08  Score=42.23  Aligned_cols=187  Identities=12%  Similarity=0.180  Sum_probs=108.2

Q ss_pred             cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC-----CCCcEEEEee-CC---CceEEEeCCCCCcc
Q 016458          172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG-----SNSRMFVSGS-CD---STARLWDTRVASRA  242 (389)
Q Consensus       172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~-~d---g~i~i~d~~~~~~~  242 (389)
                      .+++.....+-|.+||+. |+.+..+       ..+.+..+..-.     ....-+++++ .+   ..|.+|.+......
T Consensus        41 SlI~gTdK~~Gl~vYdL~-G~~l~~~-------~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~  112 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLE-GKMLHSY-------HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (353)
T ss_dssp             CEEEEEETTSCCEEEETT-CCEEEEC-------CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTE
T ss_pred             cEEEEEcCcCCEEEEcCC-CcEEEec-------ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccc
Confidence            567767777779999985 6666665       234555555431     1122244444 22   35777877543233


Q ss_pred             eeEEeee-------ccceEEEEE--ecC-CC-EEEEEecCCeEEEEECCC---Cc----eeeEeeccCCCCCCCCeeEEE
Q 016458          243 VRTFHGH-------EGDVNTVKF--FPD-GN-RFGTGSDDGTCRLFDIRT---GH----QLQVYYQQHGENEIPHVTSIA  304 (389)
Q Consensus       243 ~~~~~~~-------~~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~---~~----~~~~~~~~~~~~~~~~i~~~~  304 (389)
                      +..+...       ...+..+|+  +|. +. ++++...+|.+..|.+..   +.    .+..+..      ...+-.|.
T Consensus       113 l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~------~~q~EGCV  186 (353)
T d1h6la_         113 LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM------NSQTEGMA  186 (353)
T ss_dssp             EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC------SSCEEEEE
T ss_pred             cccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC------CCccceEE
Confidence            3332211       123667777  553 44 566777889998887632   22    2222222      12478999


Q ss_pred             eCCCCCEEEEEecCCcEEEEEccc-----ceEEEeecCcCCCCCCCeeEEEECC----CCCeEEeeeCCCeeEEeeccee
Q 016458          305 FSISGRLLFAGYSNGDCYVWDTLL-----AKVVLNLGSLQNSHEGRITCLGLSA----DGSALCTGSWDTNLKVNLGFWR  375 (389)
Q Consensus       305 ~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~i~~~~W~  375 (389)
                      +.+....|+.+-++..|..++...     ...+.....  ......+..|+.-.    +|-+|++.-.+++..|    |+
T Consensus       187 vDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g--~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~v----yd  260 (353)
T d1h6la_         187 ADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG--RHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAI----YE  260 (353)
T ss_dssp             EETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSS--SSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE----EE
T ss_pred             EeCCCCcEEEecCccceEEEEeccCCCccceeeecccC--ccccCCccccEEEEcCCCCeEEEEEcCCCCeEEE----Ee
Confidence            999999999998877666666541     222222211  12456677777532    3444555556788999    88


Q ss_pred             ccc
Q 016458          376 VQE  378 (389)
Q Consensus       376 ~~~  378 (389)
                      ..+
T Consensus       261 r~~  263 (353)
T d1h6la_         261 RQG  263 (353)
T ss_dssp             SST
T ss_pred             cCC
Confidence            865

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.094  Score=40.54  Aligned_cols=217  Identities=15%  Similarity=0.144  Sum_probs=95.4

Q ss_pred             cEEEEeCCCCCeeEE--EeeCCCcEEEEEECCCCcEEEEecCC---------CcEEEEeCCCCCCCCCCCcceeeecccc
Q 016458           90 RLIVWNALTSQKTHA--IKLPCAWVMTCAFSPTGQSVACGGLD---------SVCSIFNLNSPTDKDGNLPVSRMLSGHK  158 (389)
Q Consensus        90 ~v~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~vw~~~~~~~~~~~~~~~~~~~~~~  158 (389)
                      .+.+||..+.+-...  +..+...-..+..  ++..++.|+..         ..+.+||..+..-.     ....+....
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~-----~~~~~p~~r   92 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS-----PCAPMSVPR   92 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEE-----ECCCCSSCC
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhccccccccc-----cccccccee
Confidence            578899887653222  2222111222222  56666666531         35677777653311     111111001


Q ss_pred             cceEEEEEeeCCCcEEEEeeCCC-----eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC-----
Q 016458          159 GYVSCCQYVPDEDTHLITSSGDQ-----TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----  228 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----  228 (389)
                      ....++  ..++ .+++.++.++     ....+|..+.........    .....-.++...  ...+++.|+.+     
T Consensus        93 ~~~~~~--~~~~-~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~--~~~~~~~GG~~~~~~~  163 (288)
T d1zgka1          93 NRIGVG--VIDG-HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM----LTRRIGVGVAVL--NRLLYAVGGFDGTNRL  163 (288)
T ss_dssp             BTCEEE--EETT-EEEEECCEETTEECCCEEEEETTTTEEEECCCC----SSCCBSCEEEEE--TTEEEEECCBCSSCBC
T ss_pred             cceecc--ccce-eeEEecceecccccceeeeeccccCcccccccc----ccccccceeeee--eecceEecCccccccc
Confidence            111111  1233 4555554433     344567766554332211    111111222233  44566666553     


Q ss_pred             CceEEEeCCCCCcceeEEeee--ccceEEEEEecCCCEEEEEecC-----CeEEEEECCCCceeeEeeccCCCCCCCCee
Q 016458          229 STARLWDTRVASRAVRTFHGH--EGDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVT  301 (389)
Q Consensus       229 g~i~i~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~  301 (389)
                      ..+..||.....  .......  ...-.+.... ++.+++.++.+     .....+|..+.+....-.....   .... 
T Consensus       164 ~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---r~~~-  236 (288)
T d1zgka1         164 NSAECYYPERNE--WRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR---RSAL-  236 (288)
T ss_dssp             CCEEEEETTTTE--EEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC---CBSC-
T ss_pred             ceEEEeeccccc--cccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecccCccCc---ccce-
Confidence            346777766431  1111111  1111122222 45566666544     3467778776543332111111   1111 


Q ss_pred             EEEeCCCCCEEEEEecCC-----cEEEEEcccce
Q 016458          302 SIAFSISGRLLFAGYSNG-----DCYVWDTLLAK  330 (389)
Q Consensus       302 ~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  330 (389)
                      +++. .++++++.|+.++     .+.+||+.+.+
T Consensus       237 ~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         237 GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             EEEE-ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            2222 3677788776654     37889988643

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.44  E-value=0.19  Score=41.62  Aligned_cols=247  Identities=13%  Similarity=0.103  Sum_probs=124.0

Q ss_pred             EEEEEECCCCcEEEEec-----CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC-------
Q 016458          112 VMTCAFSPTGQSVACGG-----LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-------  179 (389)
Q Consensus       112 v~~~~~~~~~~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------  179 (389)
                      +...+++|++++++.+-     ....++++|+.+++.      ....+.  ......+.|.+++..++++.-.       
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~------~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~  198 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE------LPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSD  198 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE------EEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCccee------cccccc--cccccceEEcCCCCEEEEEEeccccCccc
Confidence            44567899999988542     234699999998651      111111  1122467899998555554321       


Q ss_pred             --------CCeEEEEeCCCCeeE--EEecCcccCCCCCCeeEEEeeCCCCcEEEEee---CCCc--eEEEeCCCCCcc--
Q 016458          180 --------DQTCVLWDITTGLRT--SVFGGEFQSGHTADVLSVSISGSNSRMFVSGS---CDST--ARLWDTRVASRA--  242 (389)
Q Consensus       180 --------dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~--i~i~d~~~~~~~--  242 (389)
                              ...|..+.+.+....  ..+..   ......+..+..++ ++++++...   .++.  +.+.|+......  
T Consensus       199 ~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e---~d~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~  274 (430)
T d1qfma1         199 GTETSTNLHQKLYYHVLGTDQSEDILCAEF---PDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGIT  274 (430)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCEEEECC---TTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred             ccccccCCcceEEEEECCCCcccccccccc---ccCCceEEeeeccC-CcceeeEEeeccCCccEEEEEeeCCCcccccc
Confidence                    235777877775332  23310   12223455666776 556654322   2333  344454432111  


Q ss_pred             -----eeEEeeeccceEEEEEecCCCEEEEEe---cCCeEEEEECCCCcee--eEeeccCCCCCCCCeeEEEeCCCCCEE
Q 016458          243 -----VRTFHGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQL--QVYYQQHGENEIPHVTSIAFSISGRLL  312 (389)
Q Consensus       243 -----~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (389)
                           ............-+ -+.++.+++...   .++.|...++......  ..+.....    ..+..-.+...+.+|
T Consensus       275 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~----~~~~~~~~~~~~~~l  349 (430)
T d1qfma1         275 GILKWVKLIDNFEGEYDYV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE----KDVLEWVACVRSNFL  349 (430)
T ss_dssp             SSCCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCS----SCEEEEEEEETTTEE
T ss_pred             cccceeEeecccccceEEE-ecCCceeecccCcccccceeEEecCCCCccccceEEecccC----cceeeeEEEEECCEE
Confidence                 11122222222222 222333333322   3466777777654321  22222111    113333344445566


Q ss_pred             EEEe-cCC--cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC----CeeEEeecceecccCcccC
Q 016458          313 FAGY-SNG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD----TNLKVNLGFWRVQEGALSP  383 (389)
Q Consensus       313 ~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~~~~W~~~~~~~~~  383 (389)
                      +... .++  .|+++++.++......    ....+.|..+...++...+...-.+    .++.-    +|+.+|++.+
T Consensus       350 vl~~~~~~~~~l~v~~~~~~~~~~~~----~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~----~Dl~t~~~~~  419 (430)
T d1qfma1         350 VLCYLHDVKNTLQLHDLATGALLKIF----PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYH----CDLTKEELEP  419 (430)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEE----CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEE----EETTSSSCCC
T ss_pred             EEEEEcCCEeEEEEEECCCCcEEEec----CCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEE----EECCCCCcce
Confidence            6554 454  5889999887765554    3344566666655555443332222    56777    8999887643

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.07  E-value=0.25  Score=39.33  Aligned_cols=196  Identities=7%  Similarity=0.164  Sum_probs=111.1

Q ss_pred             CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEEC------CCCcEEEEecC--C--CcEEEEeCCCCCCCCCC
Q 016458           78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS------PTGQSVACGGL--D--SVCSIFNLNSPTDKDGN  147 (389)
Q Consensus        78 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~~--d--g~i~vw~~~~~~~~~~~  147 (389)
                      +..+++....++-|++||+. |+.+..+..  +.++.+..-      ....-+++++.  +  ..|.+|.+.....    
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~----  111 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG----  111 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT----
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc----
Confidence            44577777777679999984 887776643  445555432      22233444442  2  3577888764221    


Q ss_pred             Ccceeeec-------ccccceEEEEE--eeCC-CcEEEEeeCCCeEEEEeCC---CC----eeEEEecCcccCCCCCCee
Q 016458          148 LPVSRMLS-------GHKGYVSCCQY--VPDE-DTHLITSSGDQTCVLWDIT---TG----LRTSVFGGEFQSGHTADVL  210 (389)
Q Consensus       148 ~~~~~~~~-------~~~~~v~~~~~--~~~~-~~~l~~~~~dg~i~iwd~~---~~----~~~~~~~~~~~~~~~~~v~  210 (389)
                        ....+.       .....+..+|+  ++.. ..+++....+|.+..|.+.   .+    ..+..+      .....+.
T Consensus       112 --~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f------~~~~q~E  183 (353)
T d1h6la_         112 --TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF------KMNSQTE  183 (353)
T ss_dssp             --EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE------ECSSCEE
T ss_pred             --ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc------CCCCccc
Confidence              111111       11123566666  4443 3356777889999888763   22    233333      3345788


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeE-E---ee--eccceEEEEEec--CCC-EEE-EEecCCeEEEEECC
Q 016458          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-F---HG--HEGDVNTVKFFP--DGN-RFG-TGSDDGTCRLFDIR  280 (389)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~---~~--~~~~i~~~~~~~--~~~-~l~-~~~~dg~i~i~d~~  280 (389)
                      .|.+.+ ....|+.+-++..|..++.......... +   .+  ....+..|+.-.  ++. +|+ +.-.+++..+||..
T Consensus       184 GCVvDd-e~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~  262 (353)
T d1h6la_         184 GMAADD-EYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQ  262 (353)
T ss_dssp             EEEEET-TTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             eEEEeC-CCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecC
Confidence            999998 6667777777776666665422111111 1   11  244677777654  322 444 44467899999987


Q ss_pred             CC-ceeeEee
Q 016458          281 TG-HQLQVYY  289 (389)
Q Consensus       281 ~~-~~~~~~~  289 (389)
                      .. ..+..+.
T Consensus       263 ~~~~~~g~F~  272 (353)
T d1h6la_         263 GQNKYVADFQ  272 (353)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCccccceEE
Confidence            64 4554544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.49  E-value=0.54  Score=38.98  Aligned_cols=54  Identities=15%  Similarity=0.266  Sum_probs=39.6

Q ss_pred             cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEee--------CCCcEEEEEECCC
Q 016458           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL--------PCAWVMTCAFSPT  120 (389)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~--------~~~~v~~~~~~~~  120 (389)
                      -...++|+|.|++++|++--.+|.|++++..++........        .......++|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            34677999999998888775679999999877765433321        1245788999984

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.32  E-value=0.31  Score=35.13  Aligned_cols=231  Identities=12%  Similarity=0.081  Sum_probs=118.6

Q ss_pred             CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEE-CCCCcEEEE------ecCCCcEEEEeCCCCCCCCCCCcc
Q 016458           78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF-SPTGQSVAC------GGLDSVCSIFNLNSPTDKDGNLPV  150 (389)
Q Consensus        78 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~------~~~dg~i~vw~~~~~~~~~~~~~~  150 (389)
                      +.++|+++...|.+.++-+..++.+...+   ++|..... .+.-.++..      |-.-..|.+-++..+.       .
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~G-------E   94 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPG-------E   94 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTT-------C
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCC-------e
Confidence            34578888889999999887776654332   22222111 111112211      1122335555554322       1


Q ss_pred             eeeecccc-cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc----cCCCCCCeeEEEeeCCCCcEEEEe
Q 016458          151 SRMLSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF----QSGHTADVLSVSISGSNSRMFVSG  225 (389)
Q Consensus       151 ~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~  225 (389)
                      ...+.... -.|.++++  ++.+.+++|+......+|-++.+..........    ..-....|..+.+...+..-|+++
T Consensus        95 E~~i~spk~vRI~S~~y--ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~a  172 (313)
T d2hu7a1          95 EQRLEAVKPMRILSGVD--TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTS  172 (313)
T ss_dssp             EEECTTSCSBEEEEEEE--CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred             eeEecCCceEEEEEeee--cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEE
Confidence            22222222 34555555  446789999999999999998886544331100    000112233333322233334444


Q ss_pred             eC-CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec---CCeEEEEECCCCceeeEeeccCCC--CCCCC
Q 016458          226 SC-DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFDIRTGHQLQVYYQQHGE--NEIPH  299 (389)
Q Consensus       226 ~~-dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~  299 (389)
                      .. .|.+++++.            .++.++.....+..+. +++-.   .....-+|+++++.-..-......  -....
T Consensus       173 dl~SG~lri~tp------------keGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~  239 (313)
T d2hu7a1         173 NLSSGGLRVFDS------------GEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTA  239 (313)
T ss_dssp             ETTTEEEEEECC------------SSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSE
T ss_pred             ecccCCEEEecC------------CCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceE
Confidence            43 555555544            4445566666665554 33321   112224577765433221111000  00112


Q ss_pred             eeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458          300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (389)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (389)
                      |+-+-+.|++++++.+-.||.-.+|.  +|+.+...
T Consensus       240 I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~p  273 (313)
T d2hu7a1         240 ITWLGYLPDGRLAVVARREGRSAVFI--DGERVEAP  273 (313)
T ss_dssp             EEEEEECTTSCEEEEEEETTEEEEEE--TTEEECCC
T ss_pred             EEeeeeCCCCcEEEEEecCCchheee--cceEecCC
Confidence            56677999999999999999999997  67766444

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.55  Score=35.86  Aligned_cols=107  Identities=7%  Similarity=0.111  Sum_probs=51.8

Q ss_pred             CCCEEEEEecC-----CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC-----CcEEEEEcccce
Q 016458          261 DGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAK  330 (389)
Q Consensus       261 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  330 (389)
                      ++..++.|+.+     ..+..||..+.+....-......    ...+.+. .++..++.|+.+     .....+|..+.+
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~  222 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIR----SGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETET  222 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCC----BSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             eecceEecCcccccccceEEEeecccccccccccccccc----ccccccc-eeeeEEEecCccccccccceeeeeeccee
Confidence            44555566543     35788887765433221111110    1122222 245566665544     356788877665


Q ss_pred             EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCe-----eEEeecceecccCc
Q 016458          331 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN-----LKVNLGFWRVQEGA  380 (389)
Q Consensus       331 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~i~~~~W~~~~~~  380 (389)
                      ....-. ...... . .+++. .++++++.|+.++.     +.+    ||+.+++
T Consensus       223 ~~~~~~-~p~~r~-~-~~~~~-~~~~l~v~GG~~~~~~~~~v~~----yd~~~~~  269 (288)
T d1zgka1         223 WTFVAP-MKHRRS-A-LGITV-HQGRIYVLGGYDGHTFLDSVEC----YDPDTDT  269 (288)
T ss_dssp             EEECCC-CSSCCB-S-CEEEE-ETTEEEEECCBCSSCBCCEEEE----EETTTTE
T ss_pred             eecccC-ccCccc-c-eEEEE-ECCEEEEEecCCCCeecceEEE----EECCCCE
Confidence            443221 101111 1 12222 26788888876654     445    7777654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.05  E-value=1.3  Score=36.55  Aligned_cols=112  Identities=12%  Similarity=0.063  Sum_probs=64.1

Q ss_pred             ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC---CCCCCCCeeEEEeCCC---CCEEEEEec------
Q 016458          250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH---GENEIPHVTSIAFSIS---GRLLFAGYS------  317 (389)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~---~~~l~~~~~------  317 (389)
                      -...++|+|.|++++|++--..|.|++++..++..........   ..........++|+|+   ..+++....      
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            3457899999999988877567999999987766543332211   1122235789999985   345554321      


Q ss_pred             -C----Cc--EEEEEcccc-------eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458          318 -N----GD--CYVWDTLLA-------KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  363 (389)
Q Consensus       318 -d----g~--i~i~d~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  363 (389)
                       +    +.  +..+.....       +.+.........|  ....|.|.|||.+.++.++
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDH--QSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSC--CEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccc--cccceeEcCCCCEEEEecC
Confidence             1    11  222222211       1111111111234  4578999999987777664

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.84  E-value=0.76  Score=33.09  Aligned_cols=220  Identities=15%  Similarity=0.100  Sum_probs=107.2

Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCCCCCCcce-eeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec
Q 016458          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS-RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (389)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  198 (389)
                      +.++++++...|.+.++-+..++........+ .....| ..+-.+-|..|-    .-|-.-..|.+-++...-....+.
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtkePI~~~~~Pk-~~ldfi~f~RDV----~kGkE~Hai~~~Nlk~~GEE~~i~   99 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPH-YGVGRVILVRDV----SKGAEQHALFKVNTSRPGEEQRLE   99 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCSSCCSEECEEC-TTBSEEEEEEEC----STTSCCEEEEEEETTSTTCEEECT
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEecccccCcCCCc-cCcceEEEEeeh----hcCcceeeEEEEccCCCCeeeEec
Confidence            45578888889999999888755211111011 111111 111111111110    001112234444544322222221


Q ss_pred             CcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee----------eccceEEEEE-ecCCCEEEE
Q 016458          199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG----------HEGDVNTVKF-FPDGNRFGT  267 (389)
Q Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~i~~~~~-~~~~~~l~~  267 (389)
                          ......|.+++..  +.+..++|+......+|-+..++  ++.+..          ....|..+.+ .++..-+++
T Consensus       100 ----spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGk--lrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~  171 (313)
T d2hu7a1         100 ----AVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGG--LRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFT  171 (313)
T ss_dssp             ----TSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTE--EEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEE
T ss_pred             ----CCceEEEEEeeec--CceEEEecccCCceEEEEEeCCc--eeeeccCCCcceEEeccCCeEEEEeeecCCcceEEE
Confidence                2223456677665  77888899988889999887652  222211          1122333332 222222444


Q ss_pred             Eec-CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC---CcEEEEEcccceEEEe-ecCc--CC
Q 016458          268 GSD-DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLN-LGSL--QN  340 (389)
Q Consensus       268 ~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~-~~~~--~~  340 (389)
                      +.- .|.+++++...+.                ++.....++.+. +++..+   ....-+|+++++.-.. +...  ..
T Consensus       172 adl~SG~lri~tpkeGS----------------~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~s  234 (313)
T d2hu7a1         172 SNLSSGGLRVFDSGEGS----------------FSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSS  234 (313)
T ss_dssp             EETTTEEEEEECCSSEE----------------EEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHH
T ss_pred             EecccCCEEEecCCCCc----------------ccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCccccee
Confidence            433 5566666544332                555556655554 333221   1222457765544322 1100  00


Q ss_pred             CCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458          341 SHEGRITCLGLSADGSALCTGSWDTNLKV  369 (389)
Q Consensus       341 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  369 (389)
                      -..-.|+-+-+.|++++++.+-.||.-++
T Consensus       235 y~p~~I~~~~Y~Pdd~L~iiakrdG~s~l  263 (313)
T d2hu7a1         235 YRPTAITWLGYLPDGRLAVVARREGRSAV  263 (313)
T ss_dssp             HCCSEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred             ecceEEEeeeeCCCCcEEEEEecCCchhe
Confidence            11234666679999999999999999888

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.09  E-value=1.6  Score=34.45  Aligned_cols=195  Identities=9%  Similarity=0.077  Sum_probs=105.2

Q ss_pred             eecccccCcEEEEEEcCCCCeEEEEec------------CCcEEEEeCCCCCeeE-EEeeCCC-------cEEEEEE--C
Q 016458           61 RTLQGHAGKVYSLDWTSERNRIVSASQ------------DGRLIVWNALTSQKTH-AIKLPCA-------WVMTCAF--S  118 (389)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~~~~~------------dg~v~iw~~~~~~~~~-~~~~~~~-------~v~~~~~--~  118 (389)
                      +.+++-...--+|+..|+|..+++++.            .|.|.++|+.+..... .+.....       ....+..  .
T Consensus        28 ~~i~g~~~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~  107 (340)
T d1v04a_          28 NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID  107 (340)
T ss_dssp             EECTTCCSCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEEC
T ss_pred             eEcCCCCCCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEc
Confidence            444443223446888899876665532            4899999987654322 2221111       1233332  4


Q ss_pred             CCCc-EEEEe---cCCCcEEEEeCCCCCCCCCCCcceeeecc-cccceEEEEEeeCCCcEEEEee---------------
Q 016458          119 PTGQ-SVACG---GLDSVCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSS---------------  178 (389)
Q Consensus       119 ~~~~-~l~~~---~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~---------------  178 (389)
                      +++. +|++.   ....+|.+|++....   ..+........ .....+++.+..++ .+++|-.               
T Consensus       108 ~dg~~~L~vvnH~~~~~~ieif~~~~~~---~~l~~~~~v~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~  183 (340)
T d1v04a_         108 DDNTVYLLVVNHPGSSSTVEVFKFQEEE---KSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHL  183 (340)
T ss_dssp             TTCCEEEEEEECSTTCCEEEEEEEETTT---TEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHT
T ss_pred             CCCcEEEEEEeccCCCceeEEEEEeCCC---CeEEEEeecCCccccCccceEEecCC-CEEEecCccCcChhhhhhhHhh
Confidence            4554 34443   345678888876532   11222222222 23457888888887 5666621               


Q ss_pred             --CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE--eeeccceE
Q 016458          179 --GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--HGHEGDVN  254 (389)
Q Consensus       179 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~i~  254 (389)
                        .-+.|.-||.  +......      ..-...+.++++|+...++++-+..+.|+.|++... ..+...  ..-.+.+-
T Consensus       184 ~~~~g~v~~~~~--~~~~~~~------~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~-~~l~~~~~~~l~~~pD  254 (340)
T d1v04a_         184 GLAWSFVTYYSP--NDVRVVA------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN-WTLTPLRVLSFDTLVD  254 (340)
T ss_dssp             TCCCEEEEEECS--SCEEEEE------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT-SCEEEEEEEECSSEEE
T ss_pred             cCCceeEEEEcC--CceEEEc------CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC-cccceEEEecCCCCCC
Confidence              1234444543  3332222      223467899999955566677777889999998754 222221  12234456


Q ss_pred             EEEEec-CCCEEEEE
Q 016458          255 TVKFFP-DGNRFGTG  268 (389)
Q Consensus       255 ~~~~~~-~~~~l~~~  268 (389)
                      .+.+.+ ++.+.+.+
T Consensus       255 Ni~~d~~~g~lwva~  269 (340)
T d1v04a_         255 NISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEEECTTTCCEEEEE
T ss_pred             ccEEecCCCEEEEEE
Confidence            778876 44444433

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=91.48  E-value=2.9  Score=33.91  Aligned_cols=165  Identities=12%  Similarity=0.095  Sum_probs=87.1

Q ss_pred             ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc--ccCCCCCCeeEEEeeCCCCcEEEEeeCC----C
Q 016458          156 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE--FQSGHTADVLSVSISGSNSRMFVSGSCD----S  229 (389)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g  229 (389)
                      +-.+.|.+|+++|..+.++++++..|-|..-+ ..++.-..+...  ........+.+++++|.+.+.+..+..+    .
T Consensus         9 ~~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~-dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~   87 (427)
T d2ebsa1           9 GGGGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDE   87 (427)
T ss_dssp             CBCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSS
T ss_pred             CCCCcEEEEEECCCCCCEEEEEecCCCEEEEE-CCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCc
Confidence            34678999999999888898888876654332 233333322110  0012234588999999777777665432    1


Q ss_pred             ceEEEeCCCCCcceeEEeee---------ccceEEEEEecC-CCEEEEEecCCeEEEEECCCCceeeEeecc-CCCCCCC
Q 016458          230 TARLWDTRVASRAVRTFHGH---------EGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ-HGENEIP  298 (389)
Q Consensus       230 ~i~i~d~~~~~~~~~~~~~~---------~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~  298 (389)
                      ...+|-.....+.-..+...         ......+.++|. ...+++++.++-|.. ....++.-...... .......
T Consensus        88 ~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~-S~D~G~tW~~~~~~~~~~~~~~  166 (427)
T d2ebsa1          88 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGI  166 (427)
T ss_dssp             CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEE-ESSTTSSCEECTTSSCCCCSSS
T ss_pred             CccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccceee-ecCCCceeeecccCcccccCCc
Confidence            23455444433433333211         123456889984 556767766655432 33334333222111 1112223


Q ss_pred             CeeEEEeCCCCC-EEEE-EecCCcEE
Q 016458          299 HVTSIAFSISGR-LLFA-GYSNGDCY  322 (389)
Q Consensus       299 ~i~~~~~~~~~~-~l~~-~~~dg~i~  322 (389)
                      .+..+.++|... .|++ +...+.|+
T Consensus       167 ~~~~i~~~p~~~~~~y~~~~~~~giy  192 (427)
T d2ebsa1         167 GYTSVIFDPERNGTIYASATAPQGMY  192 (427)
T ss_dssp             CEEEEEECTTSTTCEEEEESSTTCEE
T ss_pred             cceEEEecccccceeeeeeeecccce
Confidence            478889988543 3433 33333443

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=90.86  E-value=2.5  Score=31.93  Aligned_cols=221  Identities=14%  Similarity=0.051  Sum_probs=102.8

Q ss_pred             CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (389)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (389)
                      ..|..|+--..  ..+.-. ||.|..|-......+-.-......+..++--. ...++.  .||.+..|........   
T Consensus        26 ~~i~~va~G~~--h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~-~~~~al--~dg~v~~wG~~~~gq~---   96 (273)
T d1jtdb_          26 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN-YHSLAL--KDGEVIAWGGNEDGQT---   96 (273)
T ss_dssp             SSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECS-SEEEEE--ETTEEEEEECCTTSTT---
T ss_pred             CCcEEEEccCC--EEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCC-Cceeee--eeeeeeccCCCcceee---
Confidence            35777776332  333333 89999996544332221112223344444321 122222  4788999976542210   


Q ss_pred             CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (389)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (389)
                       ...   ......+..+....   ...+. -.|+.+..|.-.........     ......|..++-.   ...++ ...
T Consensus        97 -~~~---~~~~~~~~~i~~~~---~~~~~-~~dg~v~~~g~~~~~~~~~~-----~~~~~~v~~~~~~---~~~~~-~~~  159 (273)
T d1jtdb_          97 -TVP---AEARSGVDAIAAGA---WASYA-LKDGKVIAWGDDSDGQTTVP-----AEAQSGVTALDGG---VYTAL-AVK  159 (273)
T ss_dssp             -CCC---GGGGSSCCEEEEET---TEEEE-EETTEEEEEECCTTSTTSCC-----GGGGSSEEEEEEC---SSEEE-EEE
T ss_pred             -ccc---cccccceeEEeeec---ccccc-cccccceecccCCCCceeee-----ccCCceEEEEecc---ceeee-eec
Confidence             010   11112233333332   22222 34788888874432221111     1222344444432   22232 335


Q ss_pred             CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC
Q 016458          228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  307 (389)
Q Consensus       228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (389)
                      ++.++.|-.....+. .........|..|+...  ...+.- .||.|+.|=......+..-.     .....|..++-..
T Consensus       160 ~g~~~~~G~~~~g~~-~~~~~~~~~v~~Is~G~--~h~~~l-~dG~v~~WG~n~~Gql~~~~-----~~~~~v~~I~~G~  230 (273)
T d1jtdb_         160 NGGVIAWGDNYFGQT-TVPAEAQSGVDDVAGGI--FHSLAL-KDGKVIAWGDNRYKQTTVPT-----EALSGVSAIASGE  230 (273)
T ss_dssp             TTEEEEEECCTTSTT-SCCGGGSSSEEEEEECS--SEEEEE-ETTEEEEEECCTTSTTCCCG-----GGGSSCCEEEECS
T ss_pred             ccceeEeecccCCcc-cccccccCCccceeccc--eeeEEE-ecCcEEEcCCCCCCccCCCc-----cCCCCcEEEEeCc
Confidence            788888876544222 11222345677776542  233333 38999999654322221111     1112366766543


Q ss_pred             CCCEEEEEecCCcEEEEEc
Q 016458          308 SGRLLFAGYSNGDCYVWDT  326 (389)
Q Consensus       308 ~~~~l~~~~~dg~i~i~d~  326 (389)
                      .. .++.  .||.|+.|-.
T Consensus       231 ~~-~~~l--~~g~v~~WG~  246 (273)
T d1jtdb_         231 WY-SLAL--KNGKVIAWGS  246 (273)
T ss_dssp             SC-EEEE--ETTEEEEEST
T ss_pred             ce-EEEE--ECCEEEEECC
Confidence            32 3333  4899999954

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=89.92  E-value=3  Score=31.42  Aligned_cols=221  Identities=12%  Similarity=0.032  Sum_probs=102.0

Q ss_pred             CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (389)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  189 (389)
                      ..|..++--.  ...++-. ||.|..|-........       .-......+..+..-   ....+. -.|+.+..|...
T Consensus        26 ~~i~~va~G~--~h~~al~-dG~v~~wG~N~~GQlG-------~~~~~~~~v~~v~~G---~~~~~a-l~dg~v~~wG~~   91 (273)
T d1jtdb_          26 SGVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLT-------MPAATQSGVDAIAAG---NYHSLA-LKDGEVIAWGGN   91 (273)
T ss_dssp             SSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTS-------CCGGGGSCCCEEEEC---SSEEEE-EETTEEEEEECC
T ss_pred             CCcEEEEccC--CEEEEEE-CCEEEEEeCCCCCcee-------eeecccccceEEecC---CCceee-eeeeeeeccCCC
Confidence            4577776532  2233333 7999999765532110       011112334444332   122222 248999999764


Q ss_pred             CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe
Q 016458          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  269 (389)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  269 (389)
                      ..-.....     ......+..++...  ...++  ..|+.+..|......... ........|..++-  . .+.+...
T Consensus        92 ~~gq~~~~-----~~~~~~~~~i~~~~--~~~~~--~~dg~v~~~g~~~~~~~~-~~~~~~~~v~~~~~--~-~~~~~~~  158 (273)
T d1jtdb_          92 EDGQTTVP-----AEARSGVDAIAAGA--WASYA--LKDGKVIAWGDDSDGQTT-VPAEAQSGVTALDG--G-VYTALAV  158 (273)
T ss_dssp             TTSTTCCC-----GGGGSSCCEEEEET--TEEEE--EETTEEEEEECCTTSTTS-CCGGGGSSEEEEEE--C-SSEEEEE
T ss_pred             cceeeccc-----cccccceeEEeeec--ccccc--cccccceecccCCCCcee-eeccCCceEEEEec--c-ceeeeee
Confidence            32211111     11223455555443  22222  248899999755432211 11112233444432  2 2233344


Q ss_pred             cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEE
Q 016458          270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  349 (389)
Q Consensus       270 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  349 (389)
                      .++.+..|-............     ....|..++....  +.++- .||.|+.|=......+...    ......|..|
T Consensus       159 ~~g~~~~~G~~~~g~~~~~~~-----~~~~v~~Is~G~~--h~~~l-~dG~v~~WG~n~~Gql~~~----~~~~~~v~~I  226 (273)
T d1jtdb_         159 KNGGVIAWGDNYFGQTTVPAE-----AQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVP----TEALSGVSAI  226 (273)
T ss_dssp             ETTEEEEEECCTTSTTSCCGG-----GSSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCC----GGGGSSCCEE
T ss_pred             cccceeEeecccCCccccccc-----ccCCccceeccce--eeEEE-ecCcEEEcCCCCCCccCCC----ccCCCCcEEE
Confidence            578888887654332211111     1123777765432  33332 3799999964332111111    1122457777


Q ss_pred             EECCCCCeEEeeeCCCeeEEeecceec
Q 016458          350 GLSADGSALCTGSWDTNLKVNLGFWRV  376 (389)
Q Consensus       350 ~~~~~~~~l~~~~~dg~i~i~~~~W~~  376 (389)
                      +-.. ...++.  .||.|..    |--
T Consensus       227 ~~G~-~~~~~l--~~g~v~~----WG~  246 (273)
T d1jtdb_         227 ASGE-WYSLAL--KNGKVIA----WGS  246 (273)
T ss_dssp             EECS-SCEEEE--ETTEEEE----EST
T ss_pred             EeCc-ceEEEE--ECCEEEE----ECC
Confidence            6543 233333  4899998    853

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.74  E-value=4.9  Score=31.15  Aligned_cols=243  Identities=7%  Similarity=0.020  Sum_probs=126.1

Q ss_pred             CCCCeEEEEecCCcEEEEeCCC----CCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEe---CCCCCCCCCCCc
Q 016458           77 SERNRIVSASQDGRLIVWNALT----SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN---LNSPTDKDGNLP  149 (389)
Q Consensus        77 ~~~~~l~~~~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~---~~~~~~~~~~~~  149 (389)
                      |+.+.+++-+.+|.|+--+..+    +..-..++ ....+..+........|+.-+..|.++.-.   +........-.+
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k-~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~p   81 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH   81 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCccc-CCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccccc
Confidence            5667888889999887654321    11001112 223455554444455555556677665544   433221111111


Q ss_pred             ceeeec-ccccceEEEEEeeC--CCcEEEEeeCCCeEEEEeCCCCee------EEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458          150 VSRMLS-GHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLR------TSVFGGEFQSGHTADVLSVSISGSNSR  220 (389)
Q Consensus       150 ~~~~~~-~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (389)
                      +...+. .....+..+...++  .+.+|+..+..|.++..++.....      ...+.    ......+..+.... +..
T Consensus        82 i~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~----L~~~D~l~~v~~~~-~~~  156 (323)
T d1wp5a_          82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGIN----LKNDDQVVDVHLTD-GMN  156 (323)
T ss_dssp             GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSC----CCTTCCEEEEEEEC-SCS
T ss_pred             ceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhcc----ccccccccceeccC-CCe
Confidence            111111 12233433333221  236789999999999998754211      11111    34556677777765 556


Q ss_pred             EEEEeeCCCceEEEeCCCCCc------ceeEEee-eccceEEE-EEecCCCEEEEEecCCeEEEEECCCCc-------ee
Q 016458          221 MFVSGSCDSTARLWDTRVASR------AVRTFHG-HEGDVNTV-KFFPDGNRFGTGSDDGTCRLFDIRTGH-------QL  285 (389)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~------~~~~~~~-~~~~i~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~  285 (389)
                      .++.++..|.+..++...-..      -+.-+.- ....+.+. ...+++..|++.+..|..+.-.+....       -.
T Consensus       157 ~i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv  236 (323)
T d1wp5a_         157 ELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGV  236 (323)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCE
T ss_pred             EEEEEEecceeeEeecccccccCcccccccccccccccccchhhhccccccceeeeeeeheeecccchhhcccccccccc
Confidence            677788999999998764311      1111111 12334443 444567788888999988876654321       11


Q ss_pred             eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (389)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (389)
                      ..+...  ......+..+....+...|+..+..|.+.-.++.
T Consensus       237 ~~~k~~--k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~  276 (323)
T d1wp5a_         237 VILREL--KANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG  276 (323)
T ss_dssp             ECSCCC--SSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred             cccccc--ccccceeeeeEecCCCCEEEEEeCCCEEEEEEhh
Confidence            111111  1111235555555555566667777777666554