Citrus Sinensis ID: 016461

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLSKCGPS
cccccEEEEEcccccccccccccccccEEEEcccccccccccHHHcccccccccccHHHHHcccccEEcccccccccccHHHHHHHHHHHcccccccccccccEEEccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccEEEEEEcccccEEEEcccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccHHHHHHHcccccccEEEEEcccccEEEEcccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHccEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccEEEEccccccccccccccEEEEccHHccccccEEEccccc
cccccEEEEEEcccEEEEEEcccccccEEEEccEEEEccccccccccccccccEEcHHHHHcHHHEEEEccEEccEEccHHHHHHHHHHHHHccccccHHHccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHcccccEEEEEEccccEEEEEEEccEEcHHHcEEEcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHcccccccccEEEEcccccEEEEccHHHHcHHHHccHHHHccccccHHHHHHHHHHcccHHHHHHHHccEEEEcHHHccccHHHHHHHHHHHHHHHHccccccccccccccEEEccccccEEEEEHHHHHHHHHHHHHHHHEcHHHHHcccccEEEccccc
mdnrnvvvcdngtgyvkcgfagenfpnsvfpcvvgrpmlryEESLMEQELKDTIVGAAALDLRhqldvsypvnngivqnwedmgqvWDHAFFselkidppeckilltdpplnpaknREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLvidsgdgvthvvpvvdgysfphltKRMNVAGRHITSYLVDLLSrrgysmnrtadFETVRQIKEKLCYISYDYKREYQLGLETTILVKnytlpdgrvikvgterfqapealftpelidvegdGMADMVFRCIQEMDIDNRMMLYQHIVLsggstmypglpsrLEKEILDRYLEVVLKGNKDGLKKLRLriedpprrkhMVYLGGAVLAGIMkdapefwisrDDYLEEGIAclskcgps
mdnrnvvvcdnGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILltdpplnpaKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYsmnrtadfetvrqIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTerfqapealftpelidveGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVlkgnkdglkklrlriedpprrkhMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLSKCGPS
MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLSKCGPS
*****VVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDP*********KMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLS*****
*DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEES**EQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQ**********NYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKG*KDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLSKCGP*
MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLSKCGPS
***RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLSK*G**
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MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLSKCGPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query389 2.2.26 [Sep-21-2011]
A2YUL5389 Actin-related protein 2 O N/A no 1.0 1.0 0.889 0.0
Q6Z256389 Actin-related protein 2 O yes no 1.0 1.0 0.886 0.0
Q9LSD6389 Actin-related protein 2 O yes no 0.989 0.989 0.901 0.0
O96621392 Actin-related protein 2 O yes no 0.989 0.982 0.639 1e-152
P53487388 Actin-related protein 2 O N/A no 0.989 0.992 0.636 1e-150
Q5M7U6394 Actin-related protein 2 O yes no 0.987 0.974 0.631 1e-148
P53488394 Actin-related protein 2 O yes no 0.987 0.974 0.631 1e-148
P61161394 Actin-related protein 2 O yes no 0.987 0.974 0.631 1e-148
P61160394 Actin-related protein 2 O yes no 0.987 0.974 0.631 1e-148
A7MB62394 Actin-related protein 2 O yes no 0.987 0.974 0.631 1e-148
>sp|A2YUL5|ARP2_ORYSI Actin-related protein 2 OS=Oryza sativa subsp. indica GN=ARP2 PE=2 SV=2 Back     alignment and function desciption
 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/389 (88%), Positives = 372/389 (95%)

Query: 1   MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAAL 60
           MD+ NVVVCDNGTGYVKCGFAGENFP SVFPCVVGRP+LRYEESL EQEL D +VGAA  
Sbjct: 1   MDSGNVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLQEQELTDIVVGAACA 60

Query: 61  DLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKM 120
           DLRHQLDVSYPV NGIVQ+W+DMG +WDHAF+SELK+DP ECKILLTDPPLNP KNREKM
Sbjct: 61  DLRHQLDVSYPVTNGIVQSWDDMGHIWDHAFYSELKVDPSECKILLTDPPLNPVKNREKM 120

Query: 121 VETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN 180
           +ETMFEKYNFAGVFIQ+QAVL+LYAQGLLTGLVIDSGDGVTHVVPVVDG+S+PH+TKRMN
Sbjct: 121 IETMFEKYNFAGVFIQVQAVLSLYAQGLLTGLVIDSGDGVTHVVPVVDGFSYPHITKRMN 180

Query: 181 VAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKN 240
           VAGRHITSYLVDLLSRRGY+MN++ADFETVR+IKEKLCY+SYDYKREYQLGLETTILVK+
Sbjct: 181 VAGRHITSYLVDLLSRRGYAMNKSADFETVREIKEKLCYLSYDYKREYQLGLETTILVKS 240

Query: 241 YTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVL 300
           YTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADM FRCIQEMDIDNRM LYQHIVL
Sbjct: 241 YTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMAFRCIQEMDIDNRMTLYQHIVL 300

Query: 301 SGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360
           SGGSTMYPGLPSRLEKE+LDRYL+VVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG
Sbjct: 301 SGGSTMYPGLPSRLEKEMLDRYLDVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360

Query: 361 IMKDAPEFWISRDDYLEEGIACLSKCGPS 389
           IMKDAPEFWI+R +Y EEG+ACL KCG +
Sbjct: 361 IMKDAPEFWITRQEYQEEGLACLRKCGQA 389
Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament. Regulates the directionality of cell expansion by regulating the actin organization, and thus the microtubules distribution and the fusion of small vacuoles.
Oryza sativa subsp. indica (taxid: 39946)
>sp|Q6Z256|ARP2_ORYSJ Actin-related protein 2 OS=Oryza sativa subsp. japonica GN=ARP2 PE=3 SV=1 Back     alignment and function description
>sp|Q9LSD6|ARP2_ARATH Actin-related protein 2 OS=Arabidopsis thaliana GN=ARP2 PE=1 SV=1 Back     alignment and function description
>sp|O96621|ARP2_DICDI Actin-related protein 2 OS=Dictyostelium discoideum GN=arpB PE=1 SV=1 Back     alignment and function description
>sp|P53487|ARP2_ACACA Actin-related protein 2 OS=Acanthamoeba castellanii GN=arp2 PE=2 SV=1 Back     alignment and function description
>sp|Q5M7U6|ARP2_RAT Actin-related protein 2 OS=Rattus norvegicus GN=Actr2 PE=1 SV=1 Back     alignment and function description
>sp|P53488|ARP2_CHICK Actin-related protein 2 OS=Gallus gallus GN=ACTR2 PE=2 SV=1 Back     alignment and function description
>sp|P61161|ARP2_MOUSE Actin-related protein 2 OS=Mus musculus GN=Actr2 PE=1 SV=1 Back     alignment and function description
>sp|P61160|ARP2_HUMAN Actin-related protein 2 OS=Homo sapiens GN=ACTR2 PE=1 SV=1 Back     alignment and function description
>sp|A7MB62|ARP2_BOVIN Actin-related protein 2 OS=Bos taurus GN=ACTR2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
255543673387 Actin, putative [Ricinus communis] gi|22 0.994 1.0 0.943 0.0
225451511389 PREDICTED: actin-related protein 2 [Viti 1.0 1.0 0.940 0.0
224055767389 predicted protein [Populus trichocarpa] 1.0 1.0 0.933 0.0
449441714389 PREDICTED: actin-related protein 2-like 1.0 1.0 0.922 0.0
356571581389 PREDICTED: actin-related protein 2-like 1.0 1.0 0.925 0.0
356561616389 PREDICTED: actin-related protein 2-like 1.0 1.0 0.917 0.0
449490061390 PREDICTED: actin-related protein 2-like 1.0 0.997 0.917 0.0
414888207389 TPA: hypothetical protein ZEAMMB73_37383 1.0 1.0 0.907 0.0
242051374389 hypothetical protein SORBIDRAFT_02g04368 1.0 1.0 0.904 0.0
312282303389 unnamed protein product [Thellungiella h 1.0 1.0 0.899 0.0
>gi|255543673|ref|XP_002512899.1| Actin, putative [Ricinus communis] gi|223547910|gb|EEF49402.1| Actin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/387 (94%), Positives = 379/387 (97%)

Query: 1   MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAAL 60
           MDNRNV+VCDNGTGYVKCGFAGENFP SVFPCVVGRPMLRYEESLME++LKD +VG A  
Sbjct: 1   MDNRNVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPMLRYEESLMEEQLKDAVVGEACA 60

Query: 61  DLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKM 120
           DLRHQLD+SYPVNNGIVQNW+DMG VWDHAFF+ELKIDP ECKILLTDPPLNP+KNREKM
Sbjct: 61  DLRHQLDISYPVNNGIVQNWDDMGHVWDHAFFNELKIDPTECKILLTDPPLNPSKNREKM 120

Query: 121 VETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN 180
           VETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN
Sbjct: 121 VETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN 180

Query: 181 VAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKN 240
           VAGRHITSYLVDLLSRRGY+MNRTADFE VR+IKEKLCYISYDYKREYQLGLETTILVKN
Sbjct: 181 VAGRHITSYLVDLLSRRGYAMNRTADFEAVREIKEKLCYISYDYKREYQLGLETTILVKN 240

Query: 241 YTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVL 300
           YTLPDGRVIKVGTERFQAPEALFTPELID+EGDGMADMVFRCIQEMDIDNRMMLYQHIVL
Sbjct: 241 YTLPDGRVIKVGTERFQAPEALFTPELIDIEGDGMADMVFRCIQEMDIDNRMMLYQHIVL 300

Query: 301 SGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360
           SGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG
Sbjct: 301 SGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360

Query: 361 IMKDAPEFWISRDDYLEEGIACLSKCG 387
           IMKDAPEFWISR+DYLEEGIACL++CG
Sbjct: 361 IMKDAPEFWISREDYLEEGIACLNRCG 387

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225451511|ref|XP_002272485.1| PREDICTED: actin-related protein 2 [Vitis vinifera] gi|296082315|emb|CBI21320.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224055767|ref|XP_002298643.1| predicted protein [Populus trichocarpa] gi|222845901|gb|EEE83448.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449441714|ref|XP_004138627.1| PREDICTED: actin-related protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356571581|ref|XP_003553955.1| PREDICTED: actin-related protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356561616|ref|XP_003549077.1| PREDICTED: actin-related protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|449490061|ref|XP_004158496.1| PREDICTED: actin-related protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|414888207|tpg|DAA64221.1| TPA: hypothetical protein ZEAMMB73_373831 [Zea mays] Back     alignment and taxonomy information
>gi|242051374|ref|XP_002463431.1| hypothetical protein SORBIDRAFT_02g043680 [Sorghum bicolor] gi|241926808|gb|EER99952.1| hypothetical protein SORBIDRAFT_02g043680 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|312282303|dbj|BAJ34017.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
TAIR|locus:2092005389 ARP2 "AT3G27000" [Arabidopsis 0.989 0.989 0.901 1.9e-193
DICTYBASE|DDB_G0272106392 arpB "polyphosphate kinase com 0.989 0.982 0.639 3.5e-139
UNIPROTKB|P53488394 ACTR2 "Actin-related protein 2 0.987 0.974 0.631 1.4e-135
UNIPROTKB|A7MB62394 ACTR2 "Actin-related protein 2 0.994 0.982 0.628 1.4e-135
UNIPROTKB|P61160394 ACTR2 "Actin-related protein 2 0.994 0.982 0.628 1.4e-135
UNIPROTKB|B5APU3394 ACTR2 "Actin-related protein 2 0.994 0.982 0.628 1.4e-135
MGI|MGI:1913963394 Actr2 "ARP2 actin-related prot 0.994 0.982 0.628 1.4e-135
RGD|1310826394 Actr2 "ARP2 actin-related prot 0.994 0.982 0.628 1.4e-135
UNIPROTKB|Q5M7U6394 Actr2 "Actin-related protein 2 0.994 0.982 0.628 1.4e-135
ZFIN|ZDB-GENE-050410-4394 actr2b "ARP2 actin-related pro 0.994 0.982 0.625 3.7e-135
TAIR|locus:2092005 ARP2 "AT3G27000" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1874 (664.7 bits), Expect = 1.9e-193, P = 1.9e-193
 Identities = 347/385 (90%), Positives = 372/385 (96%)

Query:     1 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAAL 60
             MDN+NVVVCDNGTGYVKCGFAGENFP SVFPCVVGRP+LRYEESLMEQ++KD +VG    
Sbjct:     1 MDNKNVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGETCS 60

Query:    61 DLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKM 120
             +LRHQLD++YPV+NGIVQNW+DM  VWDHAF++ELKI+P +CKILLTDPPLNP+KNREKM
Sbjct:    61 ELRHQLDINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREKM 120

Query:   121 VETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN 180
             +ETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN
Sbjct:   121 IETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMN 180

Query:   181 VAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKN 240
             VAGRHIT+YLVDLLSRRGY+MN+TADFETVR+IKEKLCYISYDYKRE QLGLETTILVKN
Sbjct:   181 VAGRHITAYLVDLLSRRGYAMNKTADFETVREIKEKLCYISYDYKRESQLGLETTILVKN 240

Query:   241 YTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVL 300
             YTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVL
Sbjct:   241 YTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVL 300

Query:   301 SGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360
             SGGSTMYPGLPSRLEKEI DRYL+ VLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG
Sbjct:   301 SGGSTMYPGLPSRLEKEIQDRYLDTVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360

Query:   361 IMKDAPEFWISRDDYLEEGIACLSK 385
             IMKDAPEFWI+R+DY+EEGI CL+K
Sbjct:   361 IMKDAPEFWINREDYMEEGINCLNK 385
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0030029 "actin filament-based process" evidence=TAS
GO:0000902 "cell morphogenesis" evidence=IMP
GO:0005885 "Arp2/3 protein complex" evidence=TAS
GO:0007015 "actin filament organization" evidence=IMP
GO:0009825 "multidimensional cell growth" evidence=IMP
GO:0030036 "actin cytoskeleton organization" evidence=TAS
GO:0010090 "trichome morphogenesis" evidence=IMP
DICTYBASE|DDB_G0272106 arpB "polyphosphate kinase component" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P53488 ACTR2 "Actin-related protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A7MB62 ACTR2 "Actin-related protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P61160 ACTR2 "Actin-related protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B5APU3 ACTR2 "Actin-related protein 2-like protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1913963 Actr2 "ARP2 actin-related protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310826 Actr2 "ARP2 actin-related protein 2 homolog (yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5M7U6 Actr2 "Actin-related protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050410-4 actr2b "ARP2 actin-related protein 2b homolog (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6Z256ARP2_ORYSJNo assigned EC number0.88681.01.0yesno
P61160ARP2_HUMANNo assigned EC number0.63110.98710.9746yesno
P61161ARP2_MOUSENo assigned EC number0.63110.98710.9746yesno
P53488ARP2_CHICKNo assigned EC number0.63110.98710.9746yesno
P53489ARP2_CAEELNo assigned EC number0.60200.98710.9721yesno
P53487ARP2_ACACANo assigned EC number0.63630.98970.9922N/Ano
A7MB62ARP2_BOVINNo assigned EC number0.63110.98710.9746yesno
Q7ZXV3ARP2B_XENLANo assigned EC number0.62850.98710.9746N/Ano
Q9LSD6ARP2_ARATHNo assigned EC number0.90120.98970.9897yesno
Q5M7U6ARP2_RATNo assigned EC number0.63110.98710.9746yesno
Q5R4K0ARP2_PONABNo assigned EC number0.62850.98710.9746yesno
A2YUL5ARP2_ORYSINo assigned EC number0.88941.01.0N/Ano
Q5BL41ARP2_XENTRNo assigned EC number0.63370.98710.9746yesno
P45888ARP2_DROMENo assigned EC number0.62140.98200.9695yesno
Q7ZTP2ARP2A_XENLANo assigned EC number0.63110.98710.9746N/Ano
P32381ARP2_YEASTNo assigned EC number0.57690.99740.9923yesno
O96621ARP2_DICDINo assigned EC number0.63980.98970.9821yesno
Q61JZ2ARP2_CAEBRNo assigned EC number0.60200.98200.9720N/Ano
Q56A35ARP2B_DANRENo assigned EC number0.62850.98710.9746yesno
Q9UUJ1ARP2_SCHPONo assigned EC number0.55750.98200.9794yesno
Q7SXW6ARP2A_DANRENo assigned EC number0.63110.98710.9746yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
smart00268373 smart00268, ACTIN, Actin 1e-179
pfam00022367 pfam00022, Actin, Actin 1e-149
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 1e-122
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 1e-120
PTZ00466380 PTZ00466, PTZ00466, actin-like protein; Provisiona 1e-114
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 5e-97
PTZ00452375 PTZ00452, PTZ00452, actin; Provisional 4e-91
PTZ00280414 PTZ00280, PTZ00280, Actin-related protein 3; Provi 1e-88
cd00012185 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- 3e-14
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information 
 Score =  502 bits (1294), Expect = e-179
 Identities = 196/388 (50%), Positives = 265/388 (68%), Gaps = 19/388 (4%)

Query: 4   RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLR 63
              +V DNG+G +K GFAGE+FP  VFP +VGRP        M  + KD  VG  A + R
Sbjct: 1   VPAIVIDNGSGTIKAGFAGEDFPQVVFPSIVGRPKDGKG---MVGDAKDIFVGDEAQEKR 57

Query: 64  HQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVET 123
             L++ YP+ NGIV+NW+DM ++WD+ FF+EL+++P E  +LLT+PP+NP  NREK++E 
Sbjct: 58  GGLELKYPIENGIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEI 117

Query: 124 MFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAG 183
           MFE +NF  ++I IQAVL+LYA G  TGLVIDSGDGVTHVVPVVDGY  PH  KR+++AG
Sbjct: 118 MFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAG 177

Query: 184 RHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLE---TTILVKN 240
           R IT YL +LLS RGY  N +A+FE VR+IKEKLCY++ D+++E +L  E   ++ L K 
Sbjct: 178 RDITDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKLARESSESSKLEKT 237

Query: 241 YTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVL 300
           Y LPDG  IKVG ERF+ PE LF+PELI +E  G+ ++V+  IQ+ DID R  LY++IVL
Sbjct: 238 YELPDGNTIKVGNERFRIPEILFSPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVL 297

Query: 301 SGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360
           SGGST+ PG   RLEKE+                KKL++++  PP RK+ V+LGG++LA 
Sbjct: 298 SGGSTLIPGFGERLEKELKQLA-----------PKKLKVKVIAPPERKYSVWLGGSILAS 346

Query: 361 IMKDAPEFWISRDDYLEEGIACL-SKCG 387
           +     + WI++ +Y E G   +  KC 
Sbjct: 347 LSTF-EDMWITKKEYEESGSQIVERKCF 373

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily. Length = 373
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional Back     alignment and domain information
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional Back     alignment and domain information
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional Back     alignment and domain information
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 389
KOG0677389 consensus Actin-related protein Arp2/3 complex, su 100.0
PTZ00452375 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
PTZ00281376 actin; Provisional 100.0
KOG0676372 consensus Actin and related proteins [Cytoskeleton 100.0
PTZ00004378 actin-2; Provisional 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
KOG0679426 consensus Actin-related protein - Arp4p/Act3p [Cyt 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 100.0
KOG0680400 consensus Actin-related protein - Arp6p [Cytoskele 100.0
KOG0681645 consensus Actin-related protein - Arp5p [Cytoskele 100.0
KOG0678415 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0797618 consensus Actin-related protein [Cytoskeleton] 100.0
PRK13930335 rod shape-determining protein MreB; Provisional 100.0
PRK13927334 rod shape-determining protein MreB; Provisional 100.0
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 100.0
PRK13929335 rod-share determining protein MreBH; Provisional 100.0
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 99.97
PRK13928336 rod shape-determining protein Mbl; Provisional 99.97
COG1077342 MreB Actin-like ATPase involved in cell morphogene 99.93
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 99.81
PRK15080267 ethanolamine utilization protein EutJ; Provisional 99.77
CHL00094 621 dnaK heat shock protein 70 99.7
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 99.7
PTZ00400 663 DnaK-type molecular chaperone; Provisional 99.69
PRK13411 653 molecular chaperone DnaK; Provisional 99.69
PRK01433 595 hscA chaperone protein HscA; Provisional 99.69
PTZ00009 653 heat shock 70 kDa protein; Provisional 99.69
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 99.68
PLN03184 673 chloroplast Hsp70; Provisional 99.67
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 99.67
TIGR02350 595 prok_dnaK chaperone protein DnaK. Members of this 99.66
PRK13410 668 molecular chaperone DnaK; Provisional 99.66
PRK05183 616 hscA chaperone protein HscA; Provisional 99.65
PRK11678450 putative chaperone; Provisional 99.52
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 99.5
PRK09472420 ftsA cell division protein FtsA; Reviewed 99.46
COG0443 579 DnaK Molecular chaperone [Posttranslational modifi 99.42
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 99.26
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 99.23
PRK13917344 plasmid segregation protein ParM; Provisional 99.13
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 99.1
KOG0100 663 consensus Molecular chaperones GRP78/BiP/KAR2, HSP 99.05
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 99.05
COG4820277 EutJ Ethanolamine utilization protein, possible ch 98.97
KOG0101 620 consensus Molecular chaperones HSP70/HSC70, HSP70 98.95
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 98.93
KOG0104 902 consensus Molecular chaperones GRP170/SIL1, HSP70 98.89
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 98.7
PRK10719475 eutA reactivating factor for ethanolamine ammonia 98.47
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 98.44
KOG0103 727 consensus Molecular chaperones HSP105/HSP110/SSE1, 98.3
TIGR00241248 CoA_E_activ CoA-substrate-specific enzyme activase 98.1
KOG0102 640 consensus Molecular chaperones mortalin/PBP74/GRP7 98.01
TIGR03286404 methan_mark_15 putative methanogenesis marker prot 97.7
TIGR02261262 benz_CoA_red_D benzoyl-CoA reductase, bcr type, su 97.66
COG1924396 Activator of 2-hydroxyglutaryl-CoA dehydratase (HS 97.63
TIGR03192293 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s 97.47
PF06277473 EutA: Ethanolamine utilisation protein EutA; Inter 97.43
PF08841332 DDR: Diol dehydratase reactivase ATPase-like domai 96.04
TIGR03706300 exo_poly_only exopolyphosphatase. It appears that 95.6
PRK11031 496 guanosine pentaphosphate phosphohydrolase; Provisi 95.49
PRK03011358 butyrate kinase; Provisional 95.3
TIGR02259432 benz_CoA_red_A benzoyl-CoA reductase, bcr type, su 95.22
PF01869271 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In 94.93
COG0248 492 GppA Exopolyphosphatase [Nucleotide transport and 94.7
TIGR03123318 one_C_unchar_1 probable H4MPT-linked C1 transfer p 94.53
PRK10854 513 exopolyphosphatase; Provisional 94.33
TIGR00744318 ROK_glcA_fam ROK family protein (putative glucokin 93.31
COG1548330 Predicted transcriptional regulator/sugar kinase [ 92.65
PF02541285 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I 92.18
PF14450120 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B 91.83
PF07318343 DUF1464: Protein of unknown function (DUF1464); In 91.17
COG4819473 EutA Ethanolamine utilization protein, possible ch 91.13
PF01968290 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr 90.7
PRK09557301 fructokinase; Reviewed 90.33
COG2441374 Predicted butyrate kinase [Energy production and c 89.93
PRK13317277 pantothenate kinase; Provisional 88.9
TIGR02707351 butyr_kinase butyrate kinase. This model represent 87.45
PRK13321256 pantothenate kinase; Reviewed 85.53
PRK13324258 pantothenate kinase; Reviewed 82.87
COG1521251 Pantothenate kinase type III (Bvg accessory factor 82.58
PRK13318258 pantothenate kinase; Reviewed 80.41
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-87  Score=570.75  Aligned_cols=387  Identities=69%  Similarity=1.191  Sum_probs=377.1

Q ss_pred             CCCCCeEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccccccCcceeeccccCCcccCh
Q 016461            1 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNW   80 (389)
Q Consensus         1 m~~~~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~   80 (389)
                      ||+.++||.|+||.++|+||||++.|..+||+.+|+|..+...+.++...+++.+|++|.+.++.+++.||+.+|.+.||
T Consensus         1 Md~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnw   80 (389)
T KOG0677|consen    1 MDSRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNW   80 (389)
T ss_pred             CCCCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccCh
Confidence            89999999999999999999999999999999999998887766667777899999999999999999999999999999


Q ss_pred             hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCCceEEEEEcCCCc
Q 016461           81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGV  160 (389)
Q Consensus        81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~  160 (389)
                      |+++++|+|.|.++|++++.+.++++++||++|.++|+++++.+||+++|.++|+.-++++++|+.|..||+|||.|-+.
T Consensus        81 ddM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGV  160 (389)
T KOG0677|consen   81 DDMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGV  160 (389)
T ss_pred             HHHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhhcccCccccee
Q 016461          161 THVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKN  240 (389)
Q Consensus       161 t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~  240 (389)
                      |+|+||++|+++++..++++++|++++++|.++|..+|+.++.+.+++.++.+||++||++.|++.+.++..+++....+
T Consensus       161 THi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~  240 (389)
T KOG0677|consen  161 THIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVES  240 (389)
T ss_pred             eEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHH
Q 016461          241 YTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILD  320 (389)
Q Consensus       241 ~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~  320 (389)
                      |+||||..|.++.|||.+||.||+|..++.+.+++++++..+||..++|.|..++++|+|+||++..||+..||++||++
T Consensus       241 YtLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkq  320 (389)
T KOG0677|consen  241 YTLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQ  320 (389)
T ss_pred             eecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCCCCCCcccccHHHHhhcCcccccccC
Q 016461          321 RYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLSKCG  387 (389)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~~~~~~~itr~ey~e~G~~~l~~k~  387 (389)
                      ++.+..++|++..+.++++++..||.|++.+|+||+++|..+...+++|+||+||+|.|.+++.|+.
T Consensus       321 lyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~~  387 (389)
T KOG0677|consen  321 LYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKLG  387 (389)
T ss_pred             HHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhhc
Confidence            9999999999999999999999999999999999999999779999999999999999999998864

>PTZ00452 actin; Provisional Back     alignment and domain information
>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>KOG0676 consensus Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] Back     alignment and domain information
>KOG0797 consensus Actin-related protein [Cytoskeleton] Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative Back     alignment and domain information
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 Back     alignment and domain information
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D Back     alignment and domain information
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] Back     alignment and domain information
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit Back     alignment and domain information
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon Back     alignment and domain information
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] Back     alignment and domain information
>TIGR03706 exo_poly_only exopolyphosphatase Back     alignment and domain information
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional Back     alignment and domain information
>PRK03011 butyrate kinase; Provisional Back     alignment and domain information
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A Back     alignment and domain information
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis Back     alignment and domain information
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein Back     alignment and domain information
>PRK10854 exopolyphosphatase; Provisional Back     alignment and domain information
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) Back     alignment and domain information
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 Back     alignment and domain information
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T Back     alignment and domain information
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length Back     alignment and domain information
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] Back     alignment and domain information
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 Back     alignment and domain information
>PRK09557 fructokinase; Reviewed Back     alignment and domain information
>COG2441 Predicted butyrate kinase [Energy production and conversion] Back     alignment and domain information
>PRK13317 pantothenate kinase; Provisional Back     alignment and domain information
>TIGR02707 butyr_kinase butyrate kinase Back     alignment and domain information
>PRK13321 pantothenate kinase; Reviewed Back     alignment and domain information
>PRK13324 pantothenate kinase; Reviewed Back     alignment and domain information
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription] Back     alignment and domain information
>PRK13318 pantothenate kinase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 1e-149
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 1e-149
2oan_A375 Structure Of Oxidized Beta-Actin Length = 375 5e-99
4efh_A375 Acanthamoeba Actin Complex With Spir Domain D Lengt 7e-99
3b63_C365 Actin Filament Model In The Extended Form Of Acroms 7e-99
1yag_A375 Structure Of The Yeast Actin-human Gelsolin Segment 8e-99
3u4l_A375 Cryocooled Bovine Profilin:actin Crystal Structure 1e-98
3byh_A374 Model Of Actin-Fimbrin Abd2 Complex Length = 374 1e-98
2w49_D372 Isometrically Contracting Insect Asynchronous Fligh 2e-98
3m6g_A371 Crystal Structure Of Actin In Complex With Lobophor 2e-98
1kxp_A375 Crystal Structure Of Human Vitamin D-binding Protei 2e-98
1ijj_A377 The X-Ray Crystal Structure Of The Complex Between 2e-98
2btf_A375 The Structure Of Crystalline Profilin-Beta-Actin Le 2e-98
3b63_L365 Actin Filament Model In The Extended Form Of Acroms 3e-98
1d4x_A375 Crystal Structure Of Caenorhabditis Elegans Mg-Atp 3e-98
4b1v_A376 Structure Of The Phactr1 Rpel-N Domain Bound To G-A 3e-98
1atn_A373 Atomic Structure Of The Actin:dnase I Complex Lengt 3e-98
3g37_O376 Cryo-Em Structure Of Actin Filament In The Presence 4e-98
1qz5_A375 Structure Of Rabbit Actin In Complex With Kabiramid 4e-98
1eqy_A377 Complex Between Rabbit Muscle Alpha-Actin: Human Ge 4e-98
3b63_A365 Actin Filament Model In The Extended Form Of Acroms 5e-98
1yvn_A375 The Yeast Actin Val 159 Asn Mutant Complex With Hum 6e-98
3b63_E365 Actin Filament Model In The Extended Form Of Acroms 8e-98
1t44_A370 Structural Basis Of Actin Sequestration By Thymosin 9e-98
3w3d_A374 Crystal Structure Of Smooth Muscle G Actin Dnase I 9e-98
2gwj_A371 Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form 1e-97
1lcu_A371 Polylysine Induces An Antiparallel Actin Dimer That 4e-97
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 3e-96
3ci5_A375 Complex Of Phosphorylated Dictyostelium Discoideum 3e-96
3chw_A375 Complex Of Dictyostelium Discoideum Actin With Prof 4e-96
2hf3_A374 Crystal Structure Of Monomeric Actin In The Adp Bou 5e-96
3eks_A375 Crystal Structure Of Monomeric Actin Bound To Cytoc 6e-96
1nlv_A375 Crystal Structure Of Dictyostelium Discoideum Actin 7e-96
3b63_D357 Actin Filament Model In The Extended Form Of Acroms 1e-95
3b63_F357 Actin Filament Model In The Extended Form Of Acroms 1e-95
1dej_A375 Crystal Structure Of A DictyosteliumTETRAHYMENA CHI 4e-95
1c0f_A368 Crystal Structure Of Dictyostelium Caatp-Actin In C 5e-95
1c0g_A375 Crystal Structure Of 1:1 Complex Between Gelsolin S 8e-95
3a5l_C375 Crystal Structure Of A Dictyostelium P109a Mg2+-Act 2e-94
3mn5_A359 Structures Of Actin-Bound Wh2 Domains Of Spire And 2e-94
3a5m_C375 Crystal Structure Of A Dictyostelium P109i Mg2+-Act 3e-94
3dwl_A427 Crystal Structure Of Fission Yeast Arp2/3 Complex L 7e-51
1k8k_A418 Crystal Structure Of Arp23 COMPLEX Length = 418 1e-47
3qb0_A498 Crystal Structure Of Actin-Related Protein Arp4 Fro 6e-17
3qb0_A498 Crystal Structure Of Actin-Related Protein Arp4 Fro 2e-07
4fo0_A 593 Human Actin-Related Protein Arp8 In Its Atp-Bound S 1e-11
4i6m_A477 Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex 4e-09
4i6m_B439 Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex 6e-06
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure 
Iteration: 1

 Score =  523 bits (1347), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 243/385 (63%), Positives = 306/385 (79%), Gaps = 1/385 (0%)
Query: 4   RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLR 63
           R VVVCDNGTG+VKCG+AG NFP  +FP +VGRP++R    +   E+KD +VG  A +LR
Sbjct: 6   RKVVVCDNGTGFVKCGYAGSNFPEHIFPSLVGRPIIRSTTKVGNIEIKDLMVGDEASELR 65
Query: 64  HQLDVSYPVNNGIVQNWEDMGQVWDHAFFSE-LKIDPPECKILLTDPPLNPAKNREKMVE 122
             L+V+YP+ NGIV+NW+DM  +WD+ F  E L ID   CKILLT+PP+NP KNREK+VE
Sbjct: 66  SMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVE 125
Query: 123 TMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVA 182
            MFE Y F+GV++ IQAVLTLYAQGLLTG+V+DSGDGVTH+ PV +G+S PHLT+R+++A
Sbjct: 126 VMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIA 185
Query: 183 GRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYT 242
           GR IT YL+ LL  RGY+ N +ADFETVR IKEKLCY+ Y+ ++E +L LETT+LV++YT
Sbjct: 186 GRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYT 245
Query: 243 LPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSG 302
           LPDGR+IKVG ERF+APEALF P LI+VEG G+A+++F  IQ  DID R   Y+HIVLSG
Sbjct: 246 LPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSG 305
Query: 303 GSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIM 362
           GSTMYPGLPSRLE+E+   YLE VLKG+ + L K ++RIEDPPRRKHMV+LGGAVLA IM
Sbjct: 306 GSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIM 365
Query: 363 KDAPEFWISRDDYLEEGIACLSKCG 387
           KD   FW++R +Y E+G+  L K G
Sbjct: 366 KDKDNFWMTRQEYQEKGVRVLEKLG 390
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375 Back     alignment and structure
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375 Back     alignment and structure
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 Back     alignment and structure
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375 Back     alignment and structure
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374 Back     alignment and structure
>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372 Back     alignment and structure
>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371 Back     alignment and structure
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375 Back     alignment and structure
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377 Back     alignment and structure
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375 Back     alignment and structure
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375 Back     alignment and structure
>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376 Back     alignment and structure
>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373 Back     alignment and structure
>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376 Back     alignment and structure
>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375 Back     alignment and structure
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377 Back     alignment and structure
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370 Back     alignment and structure
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374 Back     alignment and structure
>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371 Back     alignment and structure
>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375 Back     alignment and structure
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375 Back     alignment and structure
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374 Back     alignment and structure
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375 Back     alignment and structure
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368 Back     alignment and structure
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375 Back     alignment and structure
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359 Back     alignment and structure
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427 Back     alignment and structure
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 Back     alignment and structure
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 Back     alignment and structure
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 Back     alignment and structure
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593 Back     alignment and structure
>pdb|4I6M|A Chain A, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 477 Back     alignment and structure
>pdb|4I6M|B Chain B, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 439 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 0.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 1e-180
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 1e-179
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 1e-165
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 1e-120
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 1e-04
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
 Score =  528 bits (1362), Expect = 0.0
 Identities = 245/390 (62%), Positives = 309/390 (79%), Gaps = 3/390 (0%)

Query: 1   MDN--RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAA 58
           MD+  R VVVCDNGTG+VKCG+AG NFP  +FP +VGRP++R    +   E+KD +VG  
Sbjct: 1   MDSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDE 60

Query: 59  ALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSE-LKIDPPECKILLTDPPLNPAKNR 117
           A +LR  L+V+YP+ NGIV+NW+DM  +WD+ F  E L ID   CKILLT+PP+NP KNR
Sbjct: 61  ASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNR 120

Query: 118 EKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTK 177
           EK+VE MFE Y F+GV++ IQAVLTLYAQGLLTG+V+DSGDGVTH+ PV +G+S PHLT+
Sbjct: 121 EKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTR 180

Query: 178 RMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTIL 237
           R+++AGR IT YL+ LL  RGY+ N +ADFETVR IKEKLCY+ Y+ ++E +L LETT+L
Sbjct: 181 RLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVL 240

Query: 238 VKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQH 297
           V++YTLPDGR+IKVG ERF+APEALF P LI+VEG G+A+++F  IQ  DID R   Y+H
Sbjct: 241 VESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKH 300

Query: 298 IVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAV 357
           IVLSGGSTMYPGLPSRLE+E+   YLE VLKG+ + L K ++RIEDPPRRKHMV+LGGAV
Sbjct: 301 IVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAV 360

Query: 358 LAGIMKDAPEFWISRDDYLEEGIACLSKCG 387
           LA IMKD   FW++R +Y E+G+  L K G
Sbjct: 361 LADIMKDKDNFWMTRQEYQEKGVRVLEKLG 390
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
4am6_A655 Actin-like protein ARP8; nuclear protein, chromati 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 100.0
2v7y_A 509 Chaperone protein DNAK; HSP70, heat shock protein, 99.91
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 99.89
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.89
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 99.88
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 99.85
1yuw_A 554 Heat shock cognate 71 kDa protein; chaperone; 2.60 99.8
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 99.78
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 99.74
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 99.72
4b9q_A 605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 99.66
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 99.65
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 99.65
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 99.52
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 99.36
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 99.35
3js6_A355 Uncharacterized PARM protein; partition, segregati 99.26
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 98.46
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 98.41
4ehu_A276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 97.92
1hux_A270 Activator of (R)-2-hydroxyglutaryl-COA dehydratase 96.84
1t6c_A315 Exopolyphosphatase; alpha/beta protein, actin-like 96.48
3r8e_A321 Hypothetical sugar kinase; ribonuclease H-like mot 96.33
3mdq_A315 Exopolyphosphatase; structural genomics, joint cen 96.26
3vgl_A321 Glucokinase; ROK family, transferase; HET: BGC ANP 95.98
2gup_A292 ROK family protein; sugar kinase, streptococcus pn 95.97
1u6z_A 513 Exopolyphosphatase; alpha/beta protein, askha (ace 95.92
3cer_A343 Possible exopolyphosphatase-like protein; NESG, BL 95.79
2qm1_A326 Glucokinase; alpha-beta structure, putative helix- 95.61
4db3_A327 Glcnac kinase, N-acetyl-D-glucosamine kinase; stru 95.57
4htl_A297 Beta-glucoside kinase; structural genomics, sugar 94.99
3hi0_A 508 Putative exopolyphosphatase; 17739545, structural 94.97
3vov_A302 Glucokinase, hexokinase; ROK, sugar kinase, transf 94.57
2ews_A287 Pantothenate kinase; PANK, structural genomics, st 94.05
2aa4_A289 Mannac kinase, putative N-acetylmannosamine kinase 93.99
2yhw_A343 Bifunctional UDP-N-acetylglucosamine 2-epimerase/N 93.75
2i7n_A360 Pantothenate kinase 1; PANK, transferase; HET: ACO 92.72
3cet_A334 Conserved archaeal protein; Q6M145, MRR63, NESG, X 92.27
2ap1_A327 Putative regulator protein; zinc binding protein, 91.46
3djc_A266 Type III pantothenate kinase; structural genomics, 91.45
2h3g_X268 Biosynthetic protein; pantothenate kinase, anthrax 90.04
1zc6_A305 Probable N-acetylglucosamine kinase; NESG, Q7NU07_ 86.76
1zbs_A291 Hypothetical protein PG1100; alpha-beta protein., 85.16
2ch5_A347 NAGK protein; transferase, N-acetylglucosamine, gl 84.14
3bex_A249 Type III pantothenate kinase; actin-like fold, ATP 80.98
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=1.5e-83  Score=622.52  Aligned_cols=382  Identities=35%  Similarity=0.603  Sum_probs=321.1

Q ss_pred             CC-CCCeEEEeCCCceEEEeecCCCCCccccccceEecCcchh--------------------hhhhhccCCceEecccc
Q 016461            1 MD-NRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYE--------------------ESLMEQELKDTIVGAAA   59 (389)
Q Consensus         1 m~-~~~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~--------------------~~~~~~~~~~~~vg~~~   59 (389)
                      |. +.++||||+||.++|+||||++.|+.+|||++|+++....                    ....+.+.++++||++|
T Consensus         1 m~~~~~~iViDnGs~~~KaG~ag~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ea   80 (427)
T 3dwl_A            1 MASFNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDA   80 (427)
T ss_dssp             --CCCSCEEECCCSSBC-CEETTSSSCSCCCBCCEECC------------------------------CCSSCCEETHHH
T ss_pred             CCCCCCeEEEECCCCeEEEEECCCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEchHH
Confidence            54 4578999999999999999999999999999999975410                    00002234578999999


Q ss_pred             ccccC-cceeeccccCCcccChhhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehh
Q 016461           60 LDLRH-QLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQ  138 (389)
Q Consensus        60 ~~~~~-~~~~~~p~~~g~i~d~~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~  138 (389)
                      ...+. .+.++||+++|.|.|||.+|++|+|+|.+.|++++.++|++|++|+++++..|+++++++||.|++|+++++.+
T Consensus        81 ~~~~~~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~  160 (427)
T 3dwl_A           81 LKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQ  160 (427)
T ss_dssp             HHTHHHHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEH
T ss_pred             hhCcccCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecch
Confidence            87764 67899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhcC--------CceEEEEEcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHH
Q 016461          139 AVLTLYAQG--------LLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETV  210 (389)
Q Consensus       139 ~~~a~~~~g--------~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~  210 (389)
                      +++|+|++|        .+||+|||+|++.|+|+||++|+++.++++++++||++++++|.++|+.+++.   ..+.+++
T Consensus       161 ~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~---~~~~~~~  237 (427)
T 3dwl_A          161 AVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEP---DSSLKTA  237 (427)
T ss_dssp             HHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHTTC-----------CHHH
T ss_pred             HHHHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHHHHHcCCC---chhHHHH
Confidence            999999998        68999999999999999999999999999999999999999999999888755   4577999


Q ss_pred             HHHHHhcceeccChHHHHhhcccCcccceeEEC--CCCc--EEEECccccccccccCCCCCCCCC-CCChHHHHHHHHHh
Q 016461          211 RQIKEKLCYISYDYKREYQLGLETTILVKNYTL--PDGR--VIKVGTERFQAPEALFTPELIDVE-GDGMADMVFRCIQE  285 (389)
Q Consensus       211 ~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~l--pdg~--~i~i~~~~~~~~E~lF~p~~~~~~-~~~l~~~i~~~i~~  285 (389)
                      +++|+++|||+.|+.++.+.........+.|.+  |||.  .+.++.|||.+||+||+|++++.+ ..+|+++|.++|++
T Consensus       238 ~~IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~  317 (427)
T 3dwl_A          238 ERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQS  317 (427)
T ss_dssp             HHHHHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHT
T ss_pred             HHHHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHh
Confidence            999999999999988776543332223567888  8987  888999999999999999999988 48999999999999


Q ss_pred             CChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHHhhhhhhhcC------CCCCCcceeEEEeCCCCCcceeeehHHHHh
Q 016461          286 MDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKG------NKDGLKKLRLRIEDPPRRKHMVYLGGAVLA  359 (389)
Q Consensus       286 ~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~~~~~~~~~~------~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a  359 (389)
                      ||+|+|+.|++||||+||+|++|||.+||++||+.++.....+.      .|..   .+++|..+++|++++|+||||+|
T Consensus       318 c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~---~~vkv~~~~~r~~s~WiGGSila  394 (427)
T 3dwl_A          318 SPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGG---VDVNVISHKRQRNAVWFGGSLLA  394 (427)
T ss_dssp             SCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------C---CCCCEECCTTCTTHHHHHHHHHH
T ss_pred             CCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCc---eeEEEecCCccccceecCceeec
Confidence            99999999999999999999999999999999999853211000      0222   67899999999999999999999


Q ss_pred             cCCCCCCcccccHHHHhhcCcccccccCCC
Q 016461          360 GIMKDAPEFWISRDDYLEEGIACLSKCGPS  389 (389)
Q Consensus       360 ~~l~~~~~~~itr~ey~e~G~~~l~~k~~~  389 (389)
                      + +++|+++||||+||+|+|++|+||||+|
T Consensus       395 s-l~~f~~~witk~EYeE~G~~iv~~~~~~  423 (427)
T 3dwl_A          395 Q-TPEFGSYCHTKADYEEYGASIARRYQIF  423 (427)
T ss_dssp             H-STTHHHHSEEHHHHHHSCGGGGSCCCC-
T ss_pred             c-ccchhheeEEHHHHhhhChHhheecccc
Confidence            9 9999999999999999999999999987
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 Back     alignment and structure
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Back     alignment and structure
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} Back     alignment and structure
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Back     alignment and structure
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* Back     alignment and structure
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Back     alignment and structure
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} Back     alignment and structure
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} Back     alignment and structure
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} Back     alignment and structure
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Back     alignment and structure
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} Back     alignment and structure
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 Back     alignment and structure
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A Back     alignment and structure
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* Back     alignment and structure
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A Back     alignment and structure
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp} Back     alignment and structure
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} Back     alignment and structure
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5 Back     alignment and structure
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5 Back     alignment and structure
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* Back     alignment and structure
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 389
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 5e-74
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 6e-69
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 1e-68
d2fxua1140 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 5e-50
d1k8ka1158 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 { 9e-47
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  228 bits (581), Expect = 5e-74
 Identities = 99/234 (42%), Positives = 149/234 (63%), Gaps = 12/234 (5%)

Query: 150 TGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFET 209
           TG+V+DSGDGVTH VP+ +GY+ PH   R+++AGR +T YL+ +L+ RGYS   TA+ E 
Sbjct: 3   TGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREI 62

Query: 210 VRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELID 269
           VR IKEKLCY++ D++ E      ++ L K+Y LPDG+VI +G ERF+ PE LF P  I 
Sbjct: 63  VRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIG 122

Query: 270 VEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKG 329
           +E  G+ +  +  I + DID R  LY + V+SGG+TMYPG+  R++KEI           
Sbjct: 123 MESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALA------- 175

Query: 330 NKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACL 383
                  ++++I  PP RK+ V++GG++LA  +    + WI++ +Y E G + +
Sbjct: 176 ----PSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIV 224
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140 Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 100.0
d1k8ka1158 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 99.98
d2fxua1140 Actin {Cow (Bos taurus) [TaxId: 9913]} 99.97
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 99.28
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 99.2
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 98.98
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 98.79
d1jcea1137 Prokaryotic actin homolog MreB {Thermotoga maritim 98.6
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 98.41
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 98.21
d1dkgd1183 Heat shock protein 70kDa, ATPase fragment {Escheri 98.11
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 98.05
d2fsja2164 Hypothetical protein Ta0583 {Archaeon Thermoplasma 94.36
d2zgya1157 Plasmid segregation protein ParM {Escherichia coli 91.28
d1t6ca2180 Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 91.13
d1u6za3177 Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 91.06
d1q18a1110 Glucokinase Glk {Escherichia coli [TaxId: 562]} 90.97
d1zc6a1114 Probable N-acetylglucosamine kinase CV2896 {Chromo 81.99
d1huxa_259 Hydroxyglutaryl-CoA dehydratase component A {Acida 81.36
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.2e-54  Score=380.78  Aligned_cols=225  Identities=44%  Similarity=0.850  Sum_probs=212.5

Q ss_pred             CceEEEEEcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHH
Q 016461          148 LLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKRE  227 (389)
Q Consensus       148 ~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~  227 (389)
                      ++||||||+|++.|+|+||+||+++++++.++++||++++++|.++|.+++..+....+.+.++++|+.+|+++.|...+
T Consensus         1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~~~~~~~~~~~~~~~ke~~~~~~~d~~~e   80 (225)
T d2fxua2           1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENE   80 (225)
T ss_dssp             CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHH
T ss_pred             CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECcHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHhhcccchhHH
Confidence            58999999999999999999999999999999999999999999999999988777778899999999999999999888


Q ss_pred             HhhcccCcccceeEECCCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCC
Q 016461          228 YQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMY  307 (389)
Q Consensus       228 ~~~~~~~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i  307 (389)
                      .+...........|.+|||+.+.++.+|+.+||.||+|..++.+..+|+++|.++|.+||+|.|+.|++||+|+||+|++
T Consensus        81 ~~~~~~~~~~~~~~~lpdg~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~~nIvl~GG~s~~  160 (225)
T d2fxua2          81 MATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMY  160 (225)
T ss_dssp             HHHHHHCSTTCEEEECTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCS
T ss_pred             HhhcccCcccceeEECCCCCEEEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhhcCEEEeCCcccC
Confidence            77766667778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCCCCCCcccccHHHHhhcCccccc
Q 016461          308 PGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLS  384 (389)
Q Consensus       308 ~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~~~~~~~itr~ey~e~G~~~l~  384 (389)
                      |||.+||++||..+        .|..   .++++..+++|++++|+|||++|+ +++|+++||||+||+|+|++|||
T Consensus       161 ~G~~~RL~~El~~~--------~~~~---~~~~v~~~~~~~~~aW~Ggsilas-l~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         161 PGIADRMQKEITAL--------APST---MKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             TTHHHHHHHHHHHH--------SCTT---CCCCEECCTTTTSHHHHHHHHHHH-CGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             CchhHHHHhHHHHh--------hccc---cceEEecCCCCCeeEEeCHhhhhc-CccHhhEEEEHHHHHhhCccccC
Confidence            99999999999998        5554   567888999999999999999999 99999999999999999999987
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} Back     information, alignment and structure
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure